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Q99835_SMO | Smoothened homolog   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 low complexity Q99835 8 RGPELPLLGLLLLL CCCCCCHHHHHHHH c2-4 DISO 0.0 Strong: -41.488
2 low complexity Q99835 10 PELPLLGLLLLLLLGD CCCCHHHHHHHHHHCC c1a-4 DISO 0.0 Medium: -34.345
3 low complexity Q99835 11 ELPLLGLLLLLLLG CCCHHHHHHHHHHC c2-5 DISO 0.0 Medium: -36.858
4 low complexity Q99835 11 ELPLLGLLLLLLLG CCCHHHHHHHHHHC c3-4 DISO 0.0 Medium: -37.301
5 low complexity Q99835 11 ELPLLGLLLLLL CCCHHHHHHHHH c2-rev DISO 0.0 Weak: -31.233
6 nes_diso Q99835 117 RCWAVIQPLLCAVYMPK HCCCCHHHHHHHHHCCC c1c-4 boundary middle|CRD_SMO; 0.0 Bad: -22.077 cosmic_phi
7 nes_diso Q99835 118 CWAVIQPLLCAVYMPK CCCCHHHHHHHHHCCC c1a-4 __ middle|CRD_SMO; 0.0 Medium: -33.136 cosmic_phi Medium|
8 nes_TM Q99835 235 AAFGAVTGLCTLFTLAT HHHHHHHHHHHHHHHHH c1c-AT-4 ORD boundary|7tmF_SMO_homolog; 0.0 NA cosmic_spacer
9 nes_TM Q99835 236 AFGAVTGLCTLFTLAT HHHHHHHHHHHHHHHH c1d-5 ORD boundary|7tmF_SMO_homolog; 0.0 NA cosmic_phi_to_LIVMF
10 nes_TM Q99835 262 YPAVILFYVNACFFVGS CCHHHHHHHHHHHHHHH c1c-4 ORD middle|7tmF_SMO_homolog; 0.0 NA cosmic_phi_to_LIVMF
11 nes_TM Q99835 263 PAVILFYVNACFFVGS CHHHHHHHHHHHHHHH c1aR-4 ORD middle|7tmF_SMO_homolog; 0.0 NA cosmic_phi_to_LIVMF
12 nes_ord Q99835 289 ARREIVCRADGTMRLGE CCCEEEECCCCCEEEEE c1c-AT-4 ORD middle|7tmF_SMO_homolog; 0.38 NA cosmic_spacer
13 nes_TM Q99835 308 SNETLSCVIIFVIVYY CCCCHHHHHHHHHHHH c1a-4 ORD middle|7tmF_SMO_homolog; 0.0 Bad: -26.422 cosmic_phi_to_LIVMF
14 nes_TM Q99835 314 CVIIFVIVYYALMAGV HHHHHHHHHHHHHHHH c1aR-4 ORD middle|7tmF_SMO_homolog; 0.0 Medium: -38.351 cosmic_phi_to_LIVMF
15 nes_TM Q99835 321 VYYALMAGVVWFVV HHHHHHHHHHHHHH c2-AT-4 ORD middle|7tmF_SMO_homolog; 0.0 NA cosmic_spacer
16 nes_TM Q99835 349 TYQPLSGKTSYFHLLT CCHHHHHHHHHHHHHH c1a-AT-4 ORD middle|7tmF_SMO_homolog; 0.0 NA cosmic_spacer_Pro
17 nes_TM Q99835 365 WSLPFVLTVAILAVAQ HHHHHHHHHHHHHHHC c1a-4 ORD middle|7tmF_SMO_homolog; 0.0 Medium: -33.593 cosmic_phi_to_LIVMF
18 low complexity Q99835 366 SLPFVLTVAILA HHHHHHHHHHHH c2-rev ORD middle|7tmF_SMO_homolog; 0.0 Bad: -24.701 cosmic_phi
19 low complexity Q99835 367 LPFVLTVAILAVAQ HHHHHHHHHHHHHC c2-4 ORD middle|7tmF_SMO_homolog; 0.0 Bad: -26.185 cosmic_phi_to_LIVMF
20 low complexity Q99835 400 RAGFVLAPIGLVLIVGG HHHHHHHHHHHHHHHHH c1c-4 boundary middle|7tmF_SMO_homolog; 0.0 Bad: -28.139 cosmic_phi_to_LIVMF
21 nes_TM Q99835 400 RAGFVLAPIGLVLIVG HHHHHHHHHHHHHHHH c1a-4 boundary middle|7tmF_SMO_homolog; 0.0 Weak: -31.118 cosmic_phi
22 low complexity Q99835 406 APIGLVLIVGGYFLIRG HHHHHHHHHHHHHHHHH c1c-4 boundary middle|7tmF_SMO_homolog; 0.0 Weak: -32.206 cosmic_spacer
23 nes_TM Q99835 415 GGYFLIRGVMTLFSIKS HHHHHHHHHHHHHHHHH c1c-4 boundary middle|7tmF_SMO_homolog; 0.0 Medium: -37.151 cosmic_spacer
24 nes_TM Q99835 416 GYFLIRGVMTLFSIKS HHHHHHHHHHHHHHHH c1a-4 boundary middle|7tmF_SMO_homolog; 0.0 Bad: -29.038 cosmic_phi
25 nes_TM Q99835 416 GYFLIRGVMTLFSIKS HHHHHHHHHHHHHHHH c1aR-4 boundary middle|7tmF_SMO_homolog; 0.0 Bad: -27.816 cosmic_spacer
26 nes_TM Q99835 441 AASKINETMLRLGIFG HHHHHHHHHHHHHHHH c1a-4 boundary middle|7tmF_SMO_homolog; 0.0 Weak: -30.882 cosmic_spacer
27 nes_TM Q99835 446 NETMLRLGIFGFLAFGF HHHHHHHHHHHHHHHHH c1c-4 boundary middle|7tmF_SMO_homolog; 0.0 Bad: -25.293 cosmic_phi
28 nes_TM Q99835 446 NETMLRLGIFGFLA HHHHHHHHHHHHHH c2-4 boundary middle|7tmF_SMO_homolog; 0.0 Bad: -28.536 cosmic_spacer
29 nes_TM Q99835 450 LRLGIFGFLAFGFVLIT HHHHHHHHHHHHHHHHH c1c-4 boundary middle|7tmF_SMO_homolog; 0.0 Bad: -24.922 cosmic_phi
30 nes_TM Q99835 454 IFGFLAFGFVLITFSC HHHHHHHHHHHHHHHH c1a-5 boundary middle|7tmF_SMO_homolog; 0.0 Weak: -32.75 cosmic_phi
31 nes_diso Q99835 484 FRDYVLCQANVTIGLPT HHHHHHHHHCCCCCCCC c1c-AT-4 boundary middle|7tmF_SMO_homolog; 0.0 NA cosmic_spacer
32 nes_diso Q99835 511 NRPSLLVEKINLFA CCCCHHHHHHHHHH c2-4 boundary middle|7tmF_SMO_homolog; 0.0 Medium: -33.1 cosmic_spacer Medium|
33 nes_TM Q99835 512 RPSLLVEKINLFAMFG CCCHHHHHHHHHHHHH c1a-4 boundary middle|7tmF_SMO_homolog; 0.0 Weak: -30.984 cosmic_spacer
34 nes_TM Q99835 518 EKINLFAMFGTGIAMST HHHHHHHHHHHHHHHHH c1c-4 __ boundary|7tmF_SMO_homolog; 0.0 Bad: -29.259 cosmic_phi
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.