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Q9BX63_FANCJ | Fanconi anemia group J protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q9BX63 25 QLAMMNSILRGLNS HHHHHHHHHHHHHC c3-4 boundary 0.0 Medium: -33.826 cosmic_phi Medium|
2 nes_ord Q9BX63 369 YNYLLDAQIRESMDLNL CHHHCCHHHHHHCCCCC c1c-4 ORD middle|DEAD_2; 0.0 Bad: -27.643 cosmic_spacer
3 nes_ord Q9BX63 377 IRESMDLNLKEQVVILD HHHHCCCCCCCCEEEEE c1c-4 ORD middle|DEAD_2; 0.0 Weak: -31.988 cosmic_spacer
4 nes_ord Q9BX63 402 ARESASYSVTEVQLRF HHHHCCEECCHHHHHH c1a-AT-4 ORD boundary|DEAD_2; 0.29 NA cosmic_spacer
5 nes_diso Q9BX63 469 SGNEMLLTLHKMGITT CHHHHHHHHHHCCCCH c1a-4 boundary 0.0 Medium: -34.915 cosmic_spacer Medium|
6 nes_diso Q9BX63 471 NEMLLTLHKMGITT HHHHHHHHHCCCCH c2-4 boundary 0.0 Bad: -23.391 cosmic_spacer
7 nes_diso Q9BX63 478 HKMGITTATFPILQ HHCCCCHHHHHHHH c2-AT-4 boundary 0.0 NA cosmic_spacer
8 nes_diso Q9BX63 486 TFPILQGHFSAVLQ HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -35.167 cosmic_spacer Medium|
9 nes_diso Q9BX63 521 ASTQIMLKGLFMVL CCHHHHHHHHHHHH c2-4 DISO 0.0 Weak: -31.693 cosmic_spacer Weak|
10 nes_diso Q9BX63 523 TQIMLKGLFMVLDYLF HHHHHHHHHHHHHHHH c1aR-5 DISO 0.0 Medium: -33.522 cosmic_phi_to_LIVMF Medium|
11 nes_diso Q9BX63 526 MLKGLFMVLDYLFR HHHHHHHHHHHHHH c3-4 DISO 0.0 Bad: -28.818 cosmic_phi_to_LIVMF
12 nes_diso Q9BX63 580 SRQKTAVHVLNFWC CCCCCCEEEEEEEE c2-AT-4 boundary 0.57 NA cosmic_spacer
13 nes_diso Q9BX63 599 AFSDINGKVQTIVLTS HHHHHHHHCCEEEEEC c1a-5 __ 0.14 Weak: -30.603 cosmic_phi_to_LIVMF Weak|
14 nes_ord Q9BX63 619 PMKSFSSELGVTFTIQL CHHHHHHHHCCCCEEEE c1c-5 ORD small|DEAD-like_helicase_N superfamily; boundary|SF2_C_XPD; 0.0 NA cosmic_phi_to_LIVMF
15 nes_ord Q9BX63 668 ETFEFQDEVGALLLSV CCHHHHHHHHHHHHHH c1a-4 ORD middle|SF2_C_XPD; 0.0 NA cosmic_phi_to_LIVMF
16 nes_diso Q9BX63 713 LWHNLELVKTVIVEP HHHHHHHCCEEEECC c1b-4 boundary middle|SF2_C_XPD; 0.29 Bad: -27.217 cosmic_phi_to_LIVMF
17 nes_beta_diso Q9BX63 775 NARAVITIGIPFPN CCCEEEEECCCCCC c2-AT-4 boundary middle|SF2_C_XPD; 0.71 NA cosmic_spacer
18 nes_diso Q9BX63 785 PFPNVKDLQVEL CCCCCCCHHHHH c2-rev boundary middle|SF2_C_XPD; 0.0 Bad: -25.549
19 nes_beta_diso Q9BX63 1068 PQSETIISSLKIDA CCCEEEEEEEEEEH c2-AT-4 DISO 1.0 NA
20 nes_diso Q9BX63 1187 AEDCIDTKLNGILHIEE CCCCCCCCHHHEECCCC c1c-4 DISO 0.12 Medium: -33.994 Medium|
21 nes_diso Q9BX63 1212 NVKTTWINELELGK CHHHHCHHHHHHCC c2-AT-5 DISO 0.0 NA
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.