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Q9HCK4_ROBO2 | Roundabout homolog 2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 low complexity Q9HCK4 1 XMSLLMFTQLLLCG CHHHHHHHHHHHHH c2-5-Nt __ boundary|Ig1_Robo; 0.0 Medium: -33.813 cosmic_phi
2 nes_diso Q9HCK4 1 XXMSLLMFTQLLLCGF CHHHHHHHHHHHHHHH c1aR-4-Nt boundary boundary|Ig1_Robo; 0.0 Medium: -34.755 cosmic_spacer Medium|
3 nes_diso Q9HCK4 6 FTQLLLCGFLYVRVDG HHHHHHHHHHHHCCCC c1a-4 boundary boundary|Ig1_Robo; 0.0 Medium: -39.046 cosmic_phi_to_LIVMF Medium|
4 nes_beta_ord Q9HCK4 116 LGEAVSRNASLEVALLR CCEEEEECEEEEEEECC c1c-AT-4 ORD boundary|Ig1_Robo; boundary|Ig superfamily; 0.88 NA cosmic_spacer
5 nes_ord Q9HCK4 124 ASLEVALLRDDFRQNP EEEEEEECCCCCCCCC c1aR-4 ORD boundary|Ig1_Robo; boundary|Ig superfamily; 0.43 Bad: -28.151 cosmic_spacer
6 nes_diso Q9HCK4 224 RPTFLRRPINQVVLEE CCEEEECCCCEEEECC c1a-4 boundary boundary|Ig superfamily; boundary|Ig superfamily; 0.43 Bad: -25.775 cosmic_phi
7 nes_beta_diso Q9HCK4 382 QRSDAGYYICQALTVAG CHHHCEEEEEEEEECCC c1c-AT-4 boundary boundary|Ig4_Robo; 0.88 NA cosmic_spacer
8 nes_diso Q9HCK4 417 PPIILQGPANQTLAVDG CCEEEECCCCEEECCCC c1c-AT-4 boundary boundary|Ig4_Robo; boundary|IG_like; 0.5 NA cosmic_spacer
9 nes_beta_diso Q9HCK4 444 DPLPVISWLKEGFTFPG CCCCEEEEEECCEECCC c1c-4 boundary boundary|Ig4_Robo; boundary|IG_like; 0.75 NA cosmic_phi_to_LIVMF
10 nes_diso Q9HCK4 469 EQGTLQIKNLRISD CCCCEEECCCCHHH c2-4 boundary middle|IG_like; 0.43 NA cosmic_phi_to_LIVMF
11 nes_diso Q9HCK4 526 SKPQVTDVTKNSVTLSW CCCEEEECCCCCEEEEE c1c-AT-4 boundary boundary|IG_like; boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
12 nes_diso Q9HCK4 581 TVRGLRPNTIYLFMVRA EEECCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
13 nes_diso Q9HCK4 581 TVRGLRPNTIYLFMVR EEECCCCCCEEEEEEE c1a-AT-5 boundary boundary|FN3; boundary|FN3; 0.29 NA cosmic_spacer
14 nes_diso Q9HCK4 626 DHRQVQKELGDVLVRL CHHHHCHHHCCEEEEE c1a-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|FN3; 0.0 Medium: -34.831 cosmic_phi_to_LIVMF Medium|
15 nes_diso Q9HCK4 698 VLVNLKKGVTYEIKVRP EECCCCCCCEEEEEEEE c1c-5 boundary boundary|FN3; boundary|FN3; 0.38 Weak: -30.818 cosmic_phi_to_LIVMF Weak|
16 nes_ord Q9HCK4 788 INKTVDAAIRSVIIGG EEEEEECCCEEEEECC c1a-4 ORD boundary|FN3; middle|FN3; 0.57 NA cosmic_phi_to_LIVMF
17 nes_diso Q9HCK4 800 IIGGLFPGIQYRVEVAA EECCCCCCCEEEEEEEE c1c-5 boundary boundary|FN3; boundary|FN3; 0.38 Weak: -30.88 cosmic_spacer_Pro Weak|
18 nes_diso Q9HCK4 810 YRVEVAASTSAGVGVKS EEEEEEEEECCCCCCCC c1c-AT-4 boundary boundary|FN3; boundary|FN3; 0.62 NA cosmic_spacer
19 nes_TM Q9HCK4 867 GACWVILMGFSIWL CCCCHHHHHCEEEE c2-4 boundary 0.0 NA cosmic_spacer
20 low complexity Q9HCK4 869 CWVILMGFSIWLYWRR CCHHHHHCEEEEEECC c1aR-4 boundary 0.43 NA cosmic_spacer
21 nes_diso Q9HCK4 1020 WKSSIQQKTDLMGFGY CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.