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Q9NQC7_CYLD | Ubiquitin carboxyl-terminal hydrolase CYLD   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q9NQC7 88 DVVEINEKFTELLLAI HHHHHCHHHHHHHHCC c1a-5 boundary 0.0 Strong: -44.241 Strong|
2 nes_ord Q9NQC7 154 AERTVSGIFFGVELLE CCCCCCCEEEEEECCC c1a-4 ORD middle|CAP_GLY; 0.57 NA cosmic_phi
3 nes_beta_ord Q9NQC7 157 TVSGIFFGVELLEE CCCCEEEEEECCCC c3-4 ORD middle|CAP_GLY; 0.86 NA cosmic_phi
4 nes_diso Q9NQC7 191 EDCGVFVALDKLELIE CCCEEEEEHHHEEECC c1a-4 boundary boundary|CAP_GLY; 0.57 Medium: -38.408 Medium|
5 nes_diso Q9NQC7 193 CGVFVALDKLELIE CEEEEEHHHEEECC c2-4 boundary boundary|CAP_GLY; 0.57 Medium: -35.858 Medium|
6 nes_beta_diso Q9NQC7 257 GKESLGYFVGVDMDN CCCCCCEEEEEECCC c1b-4 DISO middle|CAP_GLY; 0.71 Bad: -20.942 cosmic_spacer
7 nes_diso Q9NQC7 284 QLCSFACVESTILLHI ECCEECCCCCCEEEEH c1d-5 DISO boundary|CAP_GLY; boundary|CYLD_phos_site; 0.14 Bad: -28.96 cosmic_phi
8 nes_diso Q9NQC7 295 ILLHINDIIPALSESV EEEEHHHCCHHHHCCC c1aR-4 DISO boundary|CAP_GLY; boundary|CYLD_phos_site; 0.0 Bad: -27.454 cosmic_spacer
9 nes_diso Q9NQC7 415 RFHSLPFSLTKMPN CCCCCCCCCCCCCC c3-4 DISO middle|CYLD_phos_site; 0.0 Medium: -34.541 cosmic_spacer Medium|
10 nes_ord Q9NQC7 493 QPPGLNEVLAGLELED CCCCCCCCEEEEEEEC c1a-4 ORD boundary|CYLD_phos_site; middle|CAP_GLY; 0.43 NA
11 nes_diso Q9NQC7 520 GTRYFTCALKKALFVKL CEEEEECCCCCEEEEEH c1c-4 boundary boundary|CAP_GLY; 0.38 NA cosmic_spacer
12 nes_diso Q9NQC7 559 NSLAFGGYLSEVVEENT HHCCCCCCCCCCCCCCC c1cR-4 DISO boundary|CAP_GLY; boundary|Peptidase_C19N; 0.0 Bad: -19.505 cosmic_spacer
13 nes_diso Q9NQC7 599 NSCYLDSTLFCLFAFSS CCCCCCCCCCCCCCCCC c1c-4 DISO boundary|Peptidase_C19N; 0.0 Bad: -29.017 cosmic_spacer
14 nes_diso Q9NQC7 609 CLFAFSSVLDTVLLRP CCCCCCCCHHHHHCCC c1a-5 boundary boundary|Peptidase_C19N; 0.0 Medium: -35.629 cosmic_spacer Medium|
15 nes_diso Q9NQC7 658 KIMKLRKILEKVEAAS HHHHHHHHHHHHCCCC c1aR-4 boundary middle|Peptidase_C19N; 0.0 Weak: -30.512 cosmic_phi_to_LIVMF Weak|
16 nes_diso Q9NQC7 658 KIMKLRKILEKVEA HHHHHHHHHHHHCC c3-4 boundary middle|Peptidase_C19N; 0.0 Weak: -31.458 cosmic_spacer Weak|
17 nes_diso Q9NQC7 682 PEEFLNILFHHILRVEP HHHHHHHHHHHHHCCCC c1c-4 boundary middle|Peptidase_C19N; 0.0 Strong: -45.575 cosmic_spacer_Pro Strong|
18 nes_diso Q9NQC7 685 FLNILFHHILRVEPLLKI HHHHHHHHHHCCCCCCEE c4-5 boundary middle|Peptidase_C19N; 0.0 Bad: -24.681 cosmic_phi
19 nes_diso Q9NQC7 685 FLNILFHHILRVEP HHHHHHHHHHCCCC c3-4 boundary middle|Peptidase_C19N; 0.0 Bad: -25.054 cosmic_spacer
20 nes_ord Q9NQC7 755 QMPRFGKDFKLFKK ECCCCCCCCCCCHH c3-4 ORD middle|Peptidase_C19N; 0.0 NA cosmic_phi_to_LIVMF
21 nes_ord Q9NQC7 761 KDFKLFKKIFPSLELNI CCCCCCHHHCCCCCEEC c1cR-4 ORD middle|Peptidase_C19N; 0.0 NA cosmic_phi_to_LIVMF
22 nes_ord Q9NQC7 769 IFPSLELNITDLLE HCCCCCEECHHHHH c3-4 ORD middle|Peptidase_C19N; 0.29 NA cosmic_phi_to_LIVMF
23 nes_beta_diso Q9NQC7 855 PCQNMELFAVLCIET CCEEEEEEEEEEEEC c1b-4 boundary middle|Peptidase_C19N; 1.0 NA cosmic_spacer
24 nes_diso Q9NQC7 861 LFAVLCIETSHYVAFVK EEEEEEEECCCEEEEEE c1c-AT-5 boundary middle|Peptidase_C19N; 0.62 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.