HOME Exp-NES Cancer-NES Human-NES Documentation Contact
Q9NRR4_RNC | Ribonuclease 3   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q9NRR4 564 MTNNAGRLFHYRITVSP CCCCCCCEEEEEEEECC c1c-AT-4 boundary 0.62 NA cosmic_spacer
2 nes_ord Q9NRR4 609 HAPLTNIPLCKVIRFNI CCCCCCCCCCCEEEEEC c1c-AT-4 ORD 0.12 NA
3 nes_beta_ord Q9NRR4 617 LCKVIRFNIDYTIHFIE CCCEEEEECCEEEEEEC c1c-4 ORD 0.75 NA cosmic_phi
4 nes_ord Q9NRR4 636 MPENFCVKGLELFS CCCCCCHHHHHHHH c2-4 ORD 0.0 Weak: -30.231 cosmic_spacer
5 nes_ord Q9NRR4 641 CVKGLELFSLFLFR CHHHHHHHHHHHHH c2-5 ORD 0.0 Weak: -31.565
6 nes_ord Q9NRR4 646 ELFSLFLFRDILELYD HHHHHHHHHHHHHHCC c1aR-4 ORD 0.0 Medium: -36.557
7 low complexity Q9NRR4 678 RFHFMPRFVRFLPD CEEEEEEEEEECCC c3-4 boundary 1.0 Medium: -36.781
8 nes_diso Q9NRR4 693 GKEVLSMHQILLYL CCEEECHHHHHHHH c2-4 boundary 0.29 Bad: -29.138 cosmic_spacer
9 nes_diso Q9NRR4 695 EVLSMHQILLYLLRCS EEECHHHHHHHHHHCC c1aR-4 boundary 0.0 Weak: -32.525 cosmic_spacer Weak|
10 nes_diso Q9NRR4 695 EVLSMHQILLYLLR EEECHHHHHHHHHH c3-4 boundary 0.0 Medium: -35.227 cosmic_phi_to_LIVMF Medium|
11 low complexity Q9NRR4 763 NPDVITFPIIVHFGIRP CCCCCCCCEEEECCCCC c1c-4 boundary 0.5 NA cosmic_spacer
12 low complexity Q9NRR4 768 TFPIIVHFGIRP CCCEEEECCCCC c2-rev boundary 0.67 NA cosmic_spacer
13 nes_diso Q9NRR4 875 CLMHLDKLIGYTFQDRC HHHHHHHHHCCCCCCHH c1cR-4 boundary 0.0 Weak: -32.092 cosmic_phi_to_LIVMF Weak|
14 nes_diso Q9NRR4 941 GINTLINIMSRLGQ CHHHHHHHHHCCCC c3-4 boundary boundary|RIBOc; 0.0 Medium: -39.8 cosmic_spacer Medium|
15 nes_diso Q9NRR4 967 RLEFLGDAVVEFLT HHHHHHHHHHHHHH c3-4 boundary boundary|RIBOc; 0.0 Weak: -30.96 cosmic_spacer Weak|
16 nes_diso Q9NRR4 971 LGDAVVEFLTSVHLYY HHHHHHHHHHHHHHHH c1a-4 boundary boundary|RIBOc; 0.0 Weak: -30.636 cosmic_spacer Weak|
17 nes_diso Q9NRR4 980 TSVHLYYLFPSLEEGG HHHHHHHHCCCCCHHH c1aR-4 __ middle|RIBOc; 0.0 Weak: -31.53 cosmic_spacer Weak|
18 nes_ord Q9NRR4 1005 QNQHLAMLAKKLELDR CHHHHHHHHHHCCCCH c1a-AT-4 ORD middle|RIBOc; 0.0 NA
19 nes_ord Q9NRR4 1005 QNQHLAMLAKKLELDR CHHHHHHHHHHCCCCH c1d-4 ORD middle|RIBOc; 0.0 NA
20 nes_ord Q9NRR4 1012 LAKKLELDRFMLYA HHHHCCCCHHHHHC c2-4 ORD middle|RIBOc; 0.0 Bad: -28.113
21 nes_ord Q9NRR4 1040 MANCFEALIGAVYLEG HHHHHHHHHHHHHHHC c1a-4 ORD middle|RIBOc; 0.0 Bad: -27.609 cosmic_spacer
22 nes_diso Q9NRR4 1056 SLEEAKQLFGRLLFND CHHHHHHHHHHHHCCC c1a-AT-5 boundary boundary|RIBOc; 0.0 NA cosmic_spacer
23 nes_diso Q9NRR4 1106 KLTEFEEAIGVIFT HHHHHHHHHEEECC c3-4 boundary boundary|RIBOc; boundary|RIBOc; 0.14 Bad: -23.015 cosmic_spacer
24 nes_diso Q9NRR4 1110 FEEAIGVIFTHVRLLA HHHHHEEECCCHHHHH c1a-4 boundary boundary|RIBOc; boundary|RIBOc; 0.43 Weak: -32.446 cosmic_phi_to_LIVMF Weak|
25 nes_diso Q9NRR4 1112 EAIGVIFTHVRLLA HHHEEECCCHHHHH c2-4 boundary boundary|RIBOc; boundary|RIBOc; 0.43 Medium: -35.912 cosmic_phi_to_LIVMF Medium|
26 nes_diso Q9NRR4 1113 AIGVIFTHVRLLAR HHEEECCCHHHHHH c3-4 boundary boundary|RIBOc; boundary|RIBOc; 0.29 Bad: -29.063 cosmic_phi_to_LIVMF
27 nes_diso Q9NRR4 1124 LARAFTLRTVGFNH HHHHCCCCCCCCCC c2-4 boundary boundary|RIBOc; 0.0 Bad: -23.75
28 nes_diso Q9NRR4 1129 TLRTVGFNHLTLGH CCCCCCCCCCCCCC c2-5 boundary boundary|RIBOc; 0.0 Weak: -30.29 Weak|
29 nes_diso Q9NRR4 1145 RMEFLGDSIMQLVA HHHHHHHHHHHHHH c3-4 boundary middle|RIBOc; 0.0 Medium: -36.462 cosmic_spacer Medium|
30 nes_diso Q9NRR4 1182 VNNRTQAKVAEELGMQE HCHHHHHHHHHHHCCCE c1c-AT-4 boundary middle|RIBOc; 0.0 NA cosmic_spacer
31 nes_diso Q9NRR4 1216 TLADLLESFIAALYIDK HHHHHHHHHHHHHHHCC c1c-5 boundary middle|RIBOc; 0.0 Strong: -46.047 cosmic_spacer Strong|
32 nes_diso Q9NRR4 1217 LADLLESFIAALYIDK HHHHHHHHHHHHHHCC c1a-4 boundary middle|RIBOc; 0.0 Bad: -24.21 cosmic_spacer
33 nes_ord Q9NRR4 1230 IDKDLEYVHTFMNVCF HCCCHHHHHHHHHHCH c1d-4 ORD boundary|RIBOc; boundary|DSRM; 0.0 NA cosmic_spacer
34 nes_ord Q9NRR4 1233 DLEYVHTFMNVCFFP CHHHHHHHHHHCHHH c1b-5 ORD boundary|RIBOc; boundary|DSRM; 0.0 NA cosmic_spacer
35 nes_ord Q9NRR4 1241 MNVCFFPRLKEFILNQ HHHCHHHHHHHHHHCC c1a-4 ORD boundary|RIBOc; boundary|DSRM; 0.0 Bad: -28.046
36 nes_ord Q9NRR4 1245 FFPRLKEFILNQ HHHHHHHHHHCC c2-rev ORD boundary|RIBOc; boundary|DSRM; 0.0 Bad: -29.85
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.