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Q9NZR2_LRP1B | Low-density lipoprotein receptor-related protein 1B   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q9NZR2 1 XMSEFLLALLTLSG CCHHHHHHHHHHCC c2-5-Nt DISO 0.0 Weak: -32.883 Weak|
2 nes_diso Q9NZR2 1 XMSEFLLALLTLSG CCHHHHHHHHHHCC c3-4-Nt DISO 0.0 Medium: -33.01 Medium|
3 nes_diso Q9NZR2 4 FLLALLTLSGLLPIAR HHHHHHHHHCCCCCCC c1aR-4 boundary 0.0 Weak: -30.643 Weak|
4 nes_diso Q9NZR2 10 TLSGLLPIARVLTVGA HHHCCCCCCCCCCCCC c1a-AT-5 boundary 0.0 NA
5 nes_diso Q9NZR2 10 TLSGLLPIARVLTVGA HHHCCCCCCCCCCCCC c1d-5 boundary 0.0 NA
6 nes_diso Q9NZR2 89 KCVHLSQLCNGVLDCP EEEEHHHCCCCCCCCC c1aR-4 boundary small|LDLa; 0.0 Bad: -29.231 cosmic_spacer
7 nes_diso Q9NZR2 203 PPILLIANFETIEVFY CCEEEEECCCEEEEEE c1a-4 boundary 0.57 NA cosmic_spacer
8 nes_diso Q9NZR2 278 ILQSFHNVQQMAIDW ECCCCCCEEEEEEEC c1b-5 boundary boundary|NHL superfamily; 0.57 Bad: -25.254 cosmic_phi
9 nes_diso Q9NZR2 289 AIDWLTRNLYFVDH EEECCCCCEEEEEC c3-4 boundary boundary|NHL superfamily; 0.29 Medium: -33.005 cosmic_phi Medium|
10 nes_ord Q9NZR2 295 RNLYFVDHVGDRIFVCN CCEEEEECCCCEEEEEE c1c-4 ORD boundary|NHL superfamily; 0.5 NA cosmic_spacer
11 nes_beta_ord Q9NZR2 312 SNGSVCVTLIDLELHN CCCCEEEEEECCCCCC c1a-4 ORD middle|NHL superfamily; 0.86 NA cosmic_phi
12 nes_beta_ord Q9NZR2 312 SNGSVCVTLIDLEL CCCCEEEEEECCCC c2-4 ORD middle|NHL superfamily; 0.86 NA cosmic_phi
13 nes_beta_ord Q9NZR2 314 GSVCVTLIDLELHN CCEEEEEECCCCCC c2-4 ORD middle|NHL superfamily; 0.71 NA cosmic_phi
14 nes_diso Q9NZR2 328 PKAIAVDPIAGKLFFTD CEEEEEECCCCEEEEEE c1c-AT-4 boundary middle|NHL superfamily; small|LY; 0.5 NA cosmic_spacer
15 nes_diso Q9NZR2 329 KAIAVDPIAGKLFFTD EEEEEECCCCEEEEEE c1a-AT-4 boundary middle|NHL superfamily; small|LY; 0.43 NA cosmic_spacer
16 nes_diso Q9NZR2 329 KAIAVDPIAGKLFFTD EEEEEECCCCEEEEEE c1d-4 boundary middle|NHL superfamily; small|LY; 0.43 NA cosmic_phi
17 nes_diso Q9NZR2 373 AALALDLVNKLVYWVD CEEEEECCCCEEEEEE c1aR-5 boundary middle|NHL superfamily; 0.43 Medium: -33.169 cosmic_spacer Medium|
18 nes_ord Q9NZR2 383 LVYWVDLYLDYVGVVD EEEEEECCCCEEEEEE c1a-5 ORD middle|NHL superfamily; 0.43 Bad: -28.153 cosmic_spacer
19 nes_ord Q9NZR2 409 QGRQVRHLYGITVFE ECCCCCCCEEEEEEC c1b-4 ORD middle|NHL superfamily; 0.43 Weak: -31.499 cosmic_phi_to_LIVMF
20 nes_diso Q9NZR2 559 RALDFHAETNYIYFAD EEEEEECCCCEEEEEE c1a-AT-4 __ small|LY; 0.43 NA cosmic_spacer
21 nes_ord Q9NZR2 594 LKDDLDNVEGIAVDW ECCCCCCEEEEEEEC c1b-4 ORD small|LY; 0.57 Bad: -24.458 cosmic_phi
22 nes_ord Q9NZR2 677 EKAWMDGFNRQIFVTS EEEECCCCCCEEEECC c1d-4 ORD boundary|LY; 0.14 Bad: -24.747 cosmic_phi_to_LIVMF
23 nes_ord Q9NZR2 753 WTDYMNGSIFQLDLIT EEECCCCEEEEEECCC c1a-4 ORD 0.57 NA cosmic_phi_to_LIVMF
24 nes_ord Q9NZR2 760 SIFQLDLITSEVTLLR EEEEEECCCCCEEEEE c1aR-5 ORD 0.29 Bad: -29.371 cosmic_spacer
25 nes_ord Q9NZR2 763 QLDLITSEVTLLRH EEECCCCCEEEEEC c3-4 ORD 0.29 Bad: -27.239 cosmic_spacer
26 nes_ord Q9NZR2 1251 SCTSVDPFEAFIIFSI EEEECCCCCCEEEEEC c1d-4 ORD 0.14 Bad: -27.206 cosmic_spacer
27 nes_ord Q9NZR2 1251 SCTSVDPFEAFIIFS EEEECCCCCCEEEEE c1b-4 ORD 0.14 Bad: -29.111 cosmic_phi_to_LIVMF
28 nes_ord Q9NZR2 1262 IIFSIRHEIRRIDLHK EEEECCCEEEEEECCC c1a-5 ORD 0.57 Bad: -24.636 cosmic_spacer
29 nes_diso Q9NZR2 1279 DYSLLVPGLRNTIALDF CEEEECCCCCCEEEEEE c1c-4 boundary 0.25 Strong: -41.563 cosmic_phi Strong|
30 nes_diso Q9NZR2 1283 LVPGLRNTIALDFHFNQ ECCCCCCEEEEEEECCC c1c-5 boundary small|LY; 0.62 NA cosmic_phi_to_LIVMF
31 nes_diso Q9NZR2 1319 ESGGVSAIEVVVEH CCCCCCCEEEEEEC c2-AT-4 boundary 0.43 NA cosmic_spacer
32 nes_ord Q9NZR2 1348 NIYWIDSNLDQIEVAK CEEEEECCCCEEEEEE c1a-5 ORD small|LY; 0.43 NA cosmic_phi
33 nes_diso Q9NZR2 1428 NGLTVDHFEKRIVWTD CEEEEECCCCEEEEEE c1aR-4 boundary small|LY; 0.43 Bad: -28.082 cosmic_phi_to_LIVMF
34 nes_diso Q9NZR2 1449 IYSALYDGTNMIEIIR EEEEECCCCCCEEEEC c1a-AT-4 boundary 0.14 NA cosmic_spacer
35 nes_diso Q9NZR2 1564 SDKKTCYEMKKFLLYA CCCCCCCCCCCEEEEE c1a-AT-4 boundary 0.0 NA cosmic_spacer
36 nes_ord Q9NZR2 1590 DNPYFNFITAFTVPD CCCCCCCCEEEECCC c1b-4 ORD 0.43 NA cosmic_spacer
37 nes_ord Q9NZR2 1601 TVPDIDDVTVID ECCCCCCEEEEE c2-rev ORD 0.33 Bad: -24.961 cosmic_spacer
38 nes_ord Q9NZR2 1644 ISRDIQSIRGLAVDW ECCCCCCEEEEEEEC c1b-4 ORD small|LY; 0.57 Bad: -26.141 cosmic_phi
39 nes_diso Q9NZR2 1736 VGLSIDYVENKLYWIS CCEEEECCCCEEEEEE c1aR-5 boundary small|LY; 0.43 Bad: -28.394 cosmic_phi_to_LIVMF
40 nes_ord Q9NZR2 1810 NPTILRNKTSGVVHMKV CCEEEECCCCCCCEEEE c1c-AT-4 ORD 0.25 NA cosmic_spacer
41 nes_diso Q9NZR2 1878 ESFLMYSVHEGIRGIP CCEEEEEECCCEEEEE c1aR-5 boundary boundary|NHL superfamily; 0.57 NA cosmic_phi_to_LIVMF
42 nes_diso Q9NZR2 1948 ITNGLGRVEGIAVDW EECCCCCEEEEEEEC c1b-4 boundary middle|NHL superfamily; small|LY; 0.57 Bad: -29.912 cosmic_spacer
43 nes_ord Q9NZR2 1966 NIYWTDHGFNLIEVAR CEEEEECCCCEEEEEE c1a-AT-5 ORD middle|NHL superfamily; small|LY; 0.43 NA cosmic_spacer
44 nes_ord Q9NZR2 1978 EVARLNGSFRYVIISQ EEEECCCCCCEEEEEC c1a-5 ORD middle|NHL superfamily; 0.14 Strong: -40.92 cosmic_phi
45 nes_diso Q9NZR2 2028 GSEKVVLVSMGIAW CCCCEEEECCCCCC c2-4 boundary middle|NHL superfamily; small|Ldl_recept_b; 0.57 NA cosmic_phi_to_LIVMF
46 nes_diso Q9NZR2 2080 SGSNVDMFSVAVFG CCCCCCCEEEEEEC c2-4 boundary middle|NHL superfamily; 0.43 Weak: -31.231 cosmic_spacer Weak|
47 nes_beta_diso Q9NZR2 2085 DMFSVAVFGAYIYWSD CCEEEEEECCEEEEEE c1aR-4 boundary middle|NHL superfamily; 0.71 NA cosmic_spacer
48 nes_diso Q9NZR2 2116 ATETITMRTGLGVNLKE CCCCEEEECCCCCCCCE c1c-AT-4 boundary boundary|NHL superfamily; 0.5 NA cosmic_spacer
49 nes_diso Q9NZR2 2122 MRTGLGVNLKEVKIFN EECCCCCCCCEEEEEE c1a-4 boundary boundary|NHL superfamily; 0.14 Medium: -33.708 cosmic_phi_to_LIVMF Medium|
50 nes_diso Q9NZR2 2124 TGLGVNLKEVKIFN CCCCCCCCEEEEEE c2-4 boundary boundary|NHL superfamily; 0.29 Medium: -33.225 cosmic_phi_to_LIVMF Medium|
51 nes_beta_diso Q9NZR2 2191 YSGRTILKSIHLSD ECCCCEEEEEECCC c2-AT-4 boundary 0.71 NA cosmic_spacer
52 nes_diso Q9NZR2 2217 NPRYFKNVIALAFDY CCCCCCCEEEEEEEE c1b-4 boundary 0.57 NA cosmic_phi_to_LIVMF
53 nes_diso Q9NZR2 2242 FYSDAHFGNIQLIK EEEECCCCEEEEEE c2-AT-4 boundary 0.43 NA cosmic_spacer
54 nes_diso Q9NZR2 2366 NGLTIDYRAEKLYFSD CEEEEECCCCEEEEEE c1a-AT-4 boundary small|LY; 0.43 NA cosmic_spacer
55 nes_diso Q9NZR2 2627 NTDCTHFYKLGVKT CCCCCCCCCCCCCC c2-AT-4 boundary 0.0 NA cosmic_spacer
56 nes_diso Q9NZR2 3034 NYTLLKQGLNNVIAIDF CCEEEECCCCCEEEEEE c1c-4 boundary 0.38 Bad: -26.941 cosmic_phi_to_LIVMF
57 nes_ord Q9NZR2 3177 MALTIDYVNRRLYWAD EEEEEECCCCEEEEEC c1aR-4 ORD small|LY; 0.43 Weak: -31.438 cosmic_phi
58 nes_beta_ord Q9NZR2 3213 DIPGVIALTLFE CCCCEEEEEEEC c2-rev ORD 0.83 NA cosmic_phi_to_LIVMF
59 nes_beta_ord Q9NZR2 3216 GVIALTLFEDYIYWTD CEEEEEEECCEEEEEC c1aR-4 ORD 0.71 NA cosmic_spacer
60 nes_diso Q9NZR2 3888 QVLYIANDTDILGFIY CEEEEECCCCCEEEEC c1a-AT-5 boundary 0.29 NA cosmic_spacer
61 nes_ord Q9NZR2 4053 EEAAMDGTLRRILVQK EEEECCCCCCEEEECC c1a-4 ORD small|Ldl_recept_b; 0.14 Weak: -31.36 cosmic_phi
62 nes_ord Q9NZR2 4074 TGLAVDYFSERIYWAD CEEEEECCCCEEEEEE c1aR-4 ORD small|LY; 0.43 Bad: -27.318 cosmic_phi_to_LIVMF
63 nes_beta_ord Q9NZR2 4088 ADFELSIIGSVLYDGS EECCCCEEEEEECCCC c1aR-4 ORD 0.71 NA cosmic_spacer_Pro
64 nes_TM Q9NZR2 4435 KSDHISTRSIAIIV CCHHHCCCHHHCCH c2-AT-4 boundary 0.0 NA cosmic_spacer
65 low complexity Q9NZR2 4443 SIAIIVPLVLLVTLIT HHHCCHHHHCCCCCCC c1a-5 DISO 0.0 Medium: -33.882 cosmic_phi_to_LIVMF
66 low complexity Q9NZR2 4449 PLVLLVTLITTLVIGL HHHCCCCCCCCCCCCC c1a-5 DISO 0.0 Medium: -34.152 cosmic_phi
67 nes_TM Q9NZR2 4453 LVTLITTLVIGLVLCK CCCCCCCCCCCCCCCC c1a-5 DISO 0.0 Weak: -31.889 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.