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Q9UPN9_TRI33 | E3 ubiquitin-protein ligase TRIM33   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q9UPN9 30 AAQEAEPPLTAVLVEE CHHCCCCCCEEEEECC c1a-AT-4 DISO 0.29 NA
2 nes_diso Q9UPN9 138 AEPKLLPCLHSFCLRC CCCCCCCCCCHHHHHH c1a-4 boundary boundary|RING-HC_TIF1gamma; boundary|RING; 0.0 Bad: -24.733 cosmic_spacer
3 nes_diso Q9UPN9 142 LLPCLHSFCLRC CCCCCCHHHHHH c2-rev boundary middle|RING-HC_TIF1gamma; boundary|RING; 0.0 Bad: -23.497 cosmic_spacer
4 nes_diso Q9UPN9 350 EVNETNKRVEQEIKVAI HHHHHHHHHHHHHHHHH c1c-AT-5 boundary middle|BBC; 0.0 NA cosmic_spacer
5 nes_diso Q9UPN9 358 VEQEIKVAIFTLIN HHHHHHHHHHHHHH c2-4 boundary middle|BBC; 0.0 Bad: -27.22 cosmic_spacer
6 nes_ord Q9UPN9 401 DITGLSRQVKHVMNFTN HHHHHHHHHHHHHHHHH c1c-5 ORD middle|BBC; 0.0 Weak: -32.131 cosmic_phi_to_LIVMF
7 nes_ord Q9UPN9 401 DITGLSRQVKHVMN HHHHHHHHHHHHHH c3-4 ORD middle|BBC; 0.0 Weak: -32.688 cosmic_phi_to_LIVMF
8 nes_diso Q9UPN9 467 AKNVVNLGNLVIES HHHHHHCCEEEECC c2-4 boundary boundary|BBC; 0.29 Bad: -27.693 cosmic_phi_to_LIVMF
9 nes_diso Q9UPN9 505 TPGQINLAQLRLQH CCCCCHHHHHHHHH c2-4 DISO 0.0 Medium: -33.205 cosmic_spacer Medium|
10 nes_diso Q9UPN9 512 AQLRLQHMQQQVYAQK HHHHHHHHHHHHHHCH c1aR-4 DISO 0.0 Bad: -27.603 cosmic_phi_to_LIVMF
11 nes_diso Q9UPN9 581 NCGAFQAHQMRLAQ CCCCCCCHHHCCCC c2-AT-4 DISO 0.0 NA cosmic_spacer
12 nes_diso Q9UPN9 654 NRGPTSPSVTAIELIP CCCCCCCCCCHHHCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
13 low complexity Q9UPN9 679 SLPDIPPIQLED CCCCCCCCCCCC c2-rev DISO 0.0 Bad: -20.814 cosmic_phi_to_LIVMF
14 nes_diso Q9UPN9 810 PESSLTPPLSTNLHLES CCCCCCCCCCCCCCCCC c1c-4 DISO 0.0 Bad: -24.201 cosmic_spacer
15 nes_diso Q9UPN9 826 SELDALASLENHVKIEP CHHHHHHHHHHHCCCCC c1c-AT-4 DISO 0.0 NA cosmic_spacer
16 nes_diso Q9UPN9 827 ELDALASLENHVKIEP HHHHHHHHHHHCCCCC c1d-5 DISO 0.0 NA cosmic_spacer
17 nes_diso Q9UPN9 907 KVFHLTCHVPTLLSFPS CCEECCCCCCCCCCCCC c1cR-4 boundary small|PHD; small|PHD_TIF1gamma; 0.0 Bad: -29.335 cosmic_spacer
18 nes_diso Q9UPN9 999 KPMDLSTVKKKLQKKH CCCCHHHHHHHHHHHC c1aR-4 boundary middle|Bromo_tif1_like; 0.0 Bad: -21.863 cosmic_phi_to_LIVMF
19 nes_diso Q9UPN9 1016 QHYQIPDDFVADVRLIF CCCCCHHHHHHHHHHHH c1c-4 boundary middle|Bromo_tif1_like; 0.0 Medium: -36.334 cosmic_spacer Medium|
20 nes_diso Q9UPN9 1034 NCERFNEMMKVVQVYA HHHHHHHHHHHHHHCC c1a-4 boundary middle|Bromo_tif1_like; 0.0 Bad: -26.361 cosmic_spacer
21 nes_diso Q9UPN9 1043 KVVQVYADTQEINLKA HHHHHCCCHHHHCCCC c1a-AT-5 boundary middle|Bromo_tif1_like; 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.