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O00255_MEN1 | Menin   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)
  • Reference DB: NESdb:119
  • PMIDs: 19651895
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L39A/L41A, L266A/L267A
  • Mutation(bind): Unknown
  • Functional seq: 33DLVLLSLVL41,258QLQQKLLWLL267
  • Sites: -


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso O00255 12 PLRSIDDVVRLFAA CCCCHHHHHHHHHH c3-4 boundary boundary|Menin; 0.0 Bad: -25.732
2 low complexity O00255 30 EEPDLVLLSLVLGF
   ++++++*+*  		 CCCCHHHHHHHHHH c2-4 boundary middle|Menin; 0.0 Medium: -34.294
3 ExpNES_diso O00255 32 PDLVLLSLVLGFVEHF
 ++++++*+*      		 CCHHHHHHHHHHHHHH c1aR-4 boundary middle|Menin; 0.0 Weak: -31.828 Weak|
4 ExpNES_diso O00255 33 DLVLLSLVLGFVEHFL
++++++*+*       		 CHHHHHHHHHHHHHHH c1aR-5 boundary middle|Menin; 0.0 Weak: -32.876 Weak|
5 low complexity O00255 33 DLVLLSLVLGFVEH
++++++*+*     		 CHHHHHHHHHHHHH c3-4 boundary middle|Menin; 0.0 Medium: -37.766
6 nes_diso O00255 36 LLSLVLGFVEHFLAVNR
+++*+*           		 HHHHHHHHHHHHHHCCC c1c-5 boundary middle|Menin; 0.0 Bad: -29.326
7 nes_diso O00255 36 LLSLVLGFVEHFLA
+++*+*        		 HHHHHHHHHHHHHH c3-4 boundary middle|Menin; 0.0 Bad: -26.448
8 ExpNES_diso O00255 37 LSLVLGFVEHFLAVNR
++*+*           		 HHHHHHHHHHHHHCCC c1aR-4 boundary middle|Menin; 0.0 Weak: -31.923 Weak|
9 nes_diso O00255 39 LVLGFVEHFLAVNR
*+*           		 HHHHHHHHHHHCCC c3-4 boundary middle|Menin; 0.0 Weak: -32.99 Weak|
10 nes_diso O00255 74 GLTYFPVADLSIIA CCCCCCCCCHHHHH c2-5 boundary middle|Menin; 0.0 Strong: -42.032 Strong|
11 nes_diso O00255 89 LYARFTAQIRGAVDLSL HHHHHHHHHCCCCCCCC c1c-4 boundary middle|Menin; 0.0 Bad: -23.602
12 nes_ord O00255 169 ACQALGLRDVHLAL HHHHHCCCCCEEEE c2-4 ORD middle|Menin; 0.0 Bad: -27.962
13 nes_ord O00255 171 QALGLRDVHLALSEDH HHHCCCCCEEEECCCC c1aR-4 ORD middle|Menin; 0.43 Medium: -33.301
14 nes_ord O00255 237 RKMEVAFMVCAINPSI CHHHHHHHHHCCCCCC c1aR-4 ORD middle|Menin; 0.0 Bad: -26.02
15 nes_ord O00255 241 VAFMVCAINPSIDLHT HHHHHHCCCCCCCCCC c1aR-4 ORD middle|Menin; 0.0 Weak: -31.249
16 ExpNES_ord O00255 248 INPSIDLHTDSLELLQ
          ++++++		 CCCCCCCCCCCHHHHH c1a-AT-4 ORD middle|Menin; 0.0 NA
17 ExpNES_diso O00255 257 DSLELLQLQQKLLWLL
 ++++++++**     		 CCHHHHHHHHHHHHHH c1aR-5 boundary middle|Menin; 0.0 Medium: -37.596 Medium|
18 nes_diso O00255 267 KLLWLLYDLGHLER
*             		 HHHHHHHHCCCHHH c3-4 boundary middle|Menin; 0.0 Medium: -33.359 Medium|
19 nes_diso O00255 368 EFFEVANDVIPNLLKEA HHHHHHHHHHHHHHHHH c1cR-4 boundary middle|Menin; 0.0 Bad: -24.617
20 nes_diso O00255 448 SLGRFEGQVRQKVRIVS HHHCCCHHHHHCEEEEE c1c-5 boundary middle|Menin; 0.0 Bad: -22.772
21 nes_diso O00255 559 QSEKMKGMKELLVAT EHHHHHHHHHHHHHH c1b-4 DISO middle|Menin; 0.0 Bad: -26.716
22 nes_diso O00255 571 VATKINSSAIKLQLTA HHHCCCCCCEEEEEEE c1a-AT-4 DISO middle|Menin; 0.29 NA
23 nes_diso O00255 578 SAIKLQLTAQSQVQMKK CCEEEEEEECCCCCCCC c1c-AT-4 DISO boundary|Menin; 0.62 NA
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.