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O15457_MSH4 | MutS protein homolog 4   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:185
  • PMIDs: 17869244
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L421A/I422A/L424A, L428A/L430A, L797A/I800A, L803A/P805A
  • Mutation(bind): Unknown
  • Functional seq: Undetermined
  • Sites: -


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso O15457 88 KRAYAENTVASNFTFGA CHHHHHHHHHHCCCCCC c1c-AT-4 DISO 0.0 NA cosmic_spacer
2 nes_beta_diso O15457 167 ARGEIGMASIDLKN CCCEEEEEEEECCC c2-4 __ boundary|MutS; 1.0 Bad: -26.415 cosmic_phi_to_LIVMF
3 nes_diso O15457 189 ADNTTYAKVITKLKILS CCCCCHHHHHHHHHHHC c1c-AT-4 boundary middle|MutS; 0.0 NA cosmic_spacer
4 nes_diso O15457 214 TACAVGNSTKLFTLIT CHHHCCCCHHHHHHHH c1a-AT-4 boundary middle|MutS; 0.0 NA cosmic_spacer
5 nes_diso O15457 224 LFTLITENFKNVNFTT HHHHHHHHCCCCEEEE c1a-5 boundary middle|MutS; 0.0 Medium: -33.536 cosmic_phi Medium|
6 nes_ord O15457 247 ETKGLEYIEQLCIAE HHHHHHHHHHHHHHH c1b-4 ORD middle|MutS; 0.0 Medium: -34.771 cosmic_spacer
7 nes_ord O15457 255 EQLCIAEFSTVLMEVQ HHHHHHHCCCCCCCCC c1aR-5 ORD middle|MutS; 0.0 Weak: -31.502 cosmic_spacer
8 nes_ord O15457 258 CIAEFSTVLMEVQS HHHHCCCCCCCCCC c3-4 ORD middle|MutS; 0.0 Bad: -27.698 cosmic_spacer
9 nes_ord O15457 275 CLAAVAALLKYVEFIQ HHHHHHHHHHHHHHHH c1a-5 ORD middle|MutS; 0.0 Weak: -32.895
10 nes_ord O15457 356 LEPLVDIETINMRL HCCCCCHHHHHHHH c2-4 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -24.095 cosmic_spacer
11 nes_ord O15457 361 DIETINMRLDCVQE CHHHHHHHHHHHHH c3-4 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -27.008 cosmic_phi_to_LIVMF
12 nes_ord O15457 365 INMRLDCVQELLQDEE HHHHHHHHHHHHHCHH c1aR-4 ORD middle|MutS; middle|MutS_III; 0.0 Weak: -30.499 cosmic_phi_to_LIVMF
13 nes_diso O15457 381 LFFGLQSVISRFLDTE HHHHHHHHHHCCCCHH c1aR-4 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -30.212 cosmic_spacer Weak|
14 nes_diso O15457 381 LFFGLQSVISRFLD HHHHHHHHHHCCCC c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Bad: -23.014 cosmic_spacer
15 nes_diso O15457 391 RFLDTEQLLSVLVQIPK CCCCHHHHHHHHHCCCC c1c-AT-5 boundary middle|MutS; middle|MutS_III; 0.0 NA cosmic_spacer
16 ExpNES_diso O15457 410 TVNAAESKITNLIYLKH
           ** *  		 CCCCCCCCHHHHHHHHH c1c-AT-5 boundary middle|MutS; middle|MutS_III; 0.0 NA cosmic_spacer
17 ExpNES_diso O15457 420 NLIYLKHTLELVDP
 ** *   * *   		 HHHHHHHHHHHCHH c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -32.325 Weak|
18 nes_ord O15457 457 RFGIILEKIKTVIN CHHHHHHHHHHHHH c3-4 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -27.068 cosmic_spacer
19 nes_ord O15457 458 FGIILEKIKTVINDDA HHHHHHHHHHHHHCCC c1aR-4 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -24.312 cosmic_phi_to_LIVMF
20 nes_ord O15457 486 KCYAVRSNINEFLDIAR EEEEEECCCCHHHHHHH c1c-4 ORD middle|MutS; middle|MutS_III; 0.25 Weak: -30.414 cosmic_phi_to_LIVMF
21 nes_ord O15457 508 IVDDIAGMISQLGE HHHHHHHHHHHHHH c3-4 ORD middle|MutS; middle|MutS_III; 0.0 Weak: -32.242 cosmic_spacer
22 nes_ord O15457 534 ARGFFIQMTTDCIALPS CCEEEEEEEHHHCCCCC c1c-AT-4 ORD middle|MutS; middle|MutS_III; 0.62 NA cosmic_spacer
23 nes_ord O15457 535 RGFFIQMTTDCIALPS CEEEEEEEHHHCCCCC c1a-AT-4 ORD middle|MutS; middle|MutS_III; 0.57 NA cosmic_spacer
24 nes_ord O15457 584 SLREIYHMTYMIVCK HHHHHHHHHHHHHHH c1b-5 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -26.22 cosmic_phi
25 nes_ord O15457 592 TYMIVCKLLSEIYEHI HHHHHHHHHHHHHHHH c1aR-4 ORD middle|MutS; boundary|MutS_III; 0.0 Bad: -27.795 cosmic_phi
26 nes_ord O15457 599 LLSEIYEHIHCLYK HHHHHHHHHHHHHH c3-4 ORD middle|MutS; boundary|MutS_III; 0.0 Bad: -23.86 cosmic_spacer
27 nes_ord O15457 609 CLYKLSDTVSMLDMLL HHHHHHHHHHHHHHHH c1a-5 ORD middle|MutS; boundary|MutS_III; boundary|ABC_MutS_homologs; 0.0 Weak: -32.849 cosmic_phi_to_LIVMF
28 nes_ord O15457 613 LSDTVSMLDMLLSF HHHHHHHHHHHHHH c2-4 ORD middle|MutS; boundary|MutS_III; boundary|ABC_MutS_homologs; 0.0 Weak: -30.57 cosmic_spacer_Pro
29 nes_ord O15457 615 DTVSMLDMLLSFAHAC HHHHHHHHHHHHHHHH c1aR-4 ORD middle|MutS; boundary|MutS_III; boundary|ABC_MutS_homologs; 0.0 Strong: -40.478 cosmic_spacer_Pro
30 nes_ord O15457 632 LSDYVRPEFTDTLAIKQ HCCCCCCCCCCEEEEEC c1c-4 ORD middle|MutS; boundary|MutS_III; boundary|ABC_MutS_homologs; 0.12 Bad: -27.038 cosmic_spacer
31 nes_diso O15457 684 SGKSTYLKQIALCQ CCHHHHHHHHHHHH c2-AT-4 boundary middle|MutS; middle|ABC_MutS_homologs; 0.0 NA
32 nes_diso O15457 691 KQIALCQIMAQIGSYV HHHHHHHHHHHHCCCC c1aR-4 boundary middle|MutS; middle|ABC_MutS_homologs; 0.0 Weak: -31.425 cosmic_spacer Weak|
33 nes_diso O15457 711 SSFRIAKQIFTRISTDD CCEECCCEEEECCCCCC c1cR-4 boundary middle|MutS; middle|ABC_MutS_homologs; 0.5 Bad: -27.696 cosmic_spacer
34 nes_ord O15457 778 CEYLLSLKAFTLFA HHHHHHCCCEEEEE c2-4 ORD middle|MutS; middle|ABC_MutS_homologs; 0.14 Bad: -28.808 cosmic_phi_to_LIVMF
35 ExpNES_ord O15457 786 AFTLFATHFLELCH
           *  		 CEEEEECCHHHHHH c3-4 ORD middle|MutS; middle|ABC_MutS_homologs; 0.43 Medium: -36.413 cosmic_spacer
36 nes_diso O15457 799 HIDALYPNVENMHFEV
 *  * *         		 HHHHHCCCEEEEEEEE c1a-5 boundary middle|MutS; middle|ABC_MutS_homologs; 0.43 Medium: -36.149 cosmic_spacer Medium|
37 nes_beta_diso O15457 806 NVENMHFEVQHVKN CEEEEEEEEEEECC c3-4 boundary middle|MutS; middle|ABC_MutS_homologs; 1.0 Weak: -31.222 cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.