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O43196_MSH5 | MutS protein homolog 5   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:177 validNES:P168
  • PMIDs: 20185565
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L802A/F806A/L809A/L811A
  • Mutation(bind): Unknown
  • Functional seq: 802LVDKFMKLDL811
  • Sites: 802-811


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso O43196 84 SLKLLQRVLDEINP CHHHHHHHHHHHCC c3-4 boundary 0.0 Bad: -24.771
2 nes_diso O43196 128 PEIIFLPSVDFGLEISK CEEEEECCHHCCHHHHH c1c-4 boundary boundary|MutS; 0.25 Bad: -25.513
3 nes_diso O43196 167 FLSSIIPFDCLLTVRA EEECCCCCCCHHHHHH c1d-5 boundary middle|MutS; 0.0 Bad: -28.564
4 nes_diso O43196 176 CLLTVRALGGLLKFLG CHHHHHHHHHHHHHHH c1aR-5 boundary middle|MutS; 0.0 Weak: -32.002 Weak|
5 nes_diso O43196 179 TVRALGGLLKFLGR HHHHHHHHHHHHHH c3-4 boundary middle|MutS; 0.0 Medium: -37.684 Medium|
6 low complexity O43196 205 SVPILGFKKFMLTH CCCCCEEEEEEHHC c2-5 boundary middle|MutS; 0.71 Bad: -23.829
7 nes_diso O43196 218 HLVNIDQDTYSVLQIFK CCEEEEHHHHHHHHHHC c1c-AT-5 boundary middle|MutS; boundary|MutS_III; 0.25 NA
8 nes_diso O43196 240 SVYKVASGLKEGLSLFG HHCCCCCCCCCCCCHHH c1c-5 boundary middle|MutS; boundary|MutS_III; 0.0 Medium: -33.839 Medium|
9 nes_diso O43196 244 VASGLKEGLSLFGILN CCCCCCCCCCHHHHHH c1a-4 boundary middle|MutS; boundary|MutS_III; 0.0 Bad: -26.895
10 nes_ord O43196 280 DLGELSSRLDVIQFFL CHHHHHHHHHHHHHHH c1a-5 ORD middle|MutS; middle|MutS_III; 0.0 Medium: -33.344
11 nes_ord O43196 298 QNLDMAQMLHRLLGHI CCHHHHHHHHHHHCCC c1aR-4 ORD middle|MutS; middle|MutS_III; 0.0 Medium: -33.584
12 nes_ord O43196 305 MLHRLLGHIKNVPLILKR HHHHHHCCCCCHHHHHHH c4-5 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -28.235
13 nes_ord O43196 312 HIKNVPLILKRMKLSH CCCCHHHHHHHHHCCC c1a-5 ORD middle|MutS; middle|MutS_III; 0.0 Weak: -32.042
14 nes_ord O43196 332 DWQVLYKTVYSALGLRD HHHHHHHHHHHHHHHHH c1c-4 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -29.867
15 nes_ord O43196 370 DLHHIASLIGKVVDFEG HHHHHHHHHHHHHCCCC c1c-5 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -24.787
16 nes_ord O43196 370 DLHHIASLIGKVVD HHHHHHHHHHHHHC c3-4 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -29.221
17 nes_ord O43196 373 HIASLIGKVVDFEG HHHHHHHHHHCCCC c3-4 ORD middle|MutS; middle|MutS_III; 0.0 Medium: -34.393
18 nes_ord O43196 409 RLMGLPSFLTEVAR HHCCCHHHHHHHHH c3-4 ORD middle|MutS; middle|MutS_III; 0.0 Medium: -37.104
19 nes_ord O43196 434 SCSVIYIPLIGFLLSI CCEEEECCCCEEEEEE c1a-4 ORD middle|MutS; middle|MutS_III; 0.43 Bad: -26.502
20 low complexity O43196 436 SVIYIPLIGFLLSI EEEECCCCEEEEEE c2-5 ORD middle|MutS; middle|MutS_III; 0.43 Strong: -40.079
21 nes_ord O43196 457 EASDFEINGLDFMF CCCCCCCCCEEEEE c2-4 ORD middle|MutS; middle|MutS_III; 0.14 Bad: -21.852
22 nes_ord O43196 459 SDFEINGLDFMFLSEE CCCCCCCEEEEEEECC c1aR-4 ORD middle|MutS; middle|MutS_III; 0.57 Bad: -24.489
23 nes_ord O43196 501 ETLLMYQLQCQVLARA HHHHHHHHHHHHHHHH c1aR-4 ORD middle|MutS; boundary|MutS_III; 0.0 Medium: -33.432
24 nes_ord O43196 521 RVLDLASRLDVLLALAS HHHHHHHHHHHHHHHHH c1c-5 ORD middle|MutS; boundary|MutS_III; boundary|ABC_MSH5_euk; 0.0 Medium: -37.004
25 nes_ord O43196 521 RVLDLASRLDVLLA HHHHHHHHHHHHHH c3-4 ORD middle|MutS; boundary|MutS_III; 0.0 Strong: -40.975
26 nes_diso O43196 596 SGKSIYLKQVGLIT CCHHHHHHHHHHHH c2-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Weak: -31.106 Weak|
27 nes_diso O43196 603 KQVGLITFMALVGSFV HHHHHHHHHHHHCCCC c1aR-5 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Bad: -27.854
28 nes_diso O43196 606 GLITFMALVGSFVPAE HHHHHHHHHCCCCCHH c1aR-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Bad: -27.401
29 nes_diso O43196 606 GLITFMALVGSFVP HHHHHHHHHCCCCC c3-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Bad: -24.986
30 nes_diso O43196 624 EIGAVDAIFTRIHS EEECCCEECCCCCC c3-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.29 Medium: -36.876 Medium|
31 nes_diso O43196 637 SCESISLGLSTFMIDL CCCHHHCCCCHHHHHH c1a-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Weak: -32.087 Weak|
32 nes_diso O43196 639 ESISLGLSTFMIDL CHHHCCCCHHHHHH c2-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Bad: -27.629
33 nes_diso O43196 641 ISLGLSTFMIDLNQVA HHCCCCHHHHHHHHHH c1aR-5 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Medium: -37.644 Medium|
34 nes_diso O43196 644 GLSTFMIDLNQVAK CCCHHHHHHHHHHH c3-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Bad: -26.784
35 nes_diso O43196 648 FMIDLNQVAKAVNNAT HHHHHHHHHHHHHHCC c1aR-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 Bad: -29.34
36 nes_diso O43196 655 VAKAVNNATAQSLVLID HHHHHHHCCCCCEEEEE c1c-AT-4 boundary middle|MutS; middle|ABC_MSH5_euk; 0.0 NA
37 nes_ord O43196 701 PHIFVATNFLSLVQLQL CEEEEECCHHHHHHCCC c1c-4 ORD middle|MutS; middle|ABC_MSH5_euk; 0.25 Medium: -33.756
38 nes_ord O43196 706 ATNFLSLVQLQLLP ECCHHHHHHCCCCC c2-4 ORD middle|MutS; middle|ABC_MSH5_euk; 0.0 Weak: -31.193
39 nes_beta_ord O43196 737 DLVFFYQVCEGVAKAS EEEEEEEEECCCCCCC c1aR-4 ORD middle|MutS; boundary|ABC_MSH5_euk; 0.71 Bad: -26.974
40 ExpNES_diso O43196 798 NCQTLVDKFMKLDLED
    *+++*++*+*  		 HHHHHHHHHHHCCCCC c1a-4 DISO boundary|MutS; boundary|ABC_MSH5_euk; 0.0 Strong: -44.098 Strong|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.