O43707 | Alpha-actinin-4

O43707_ACTN4 | Alpha-actinin-4 ProteinAtlas Cosmic Proviz Swissmodel

Reference DB: NESdb:227
PMIDs: 20197409
Species: Homo sapiens (Human)
Evidence: LMB Sensitive
Mutation(export): Unknown
Mutation(bind): Unknown
Functional seq: 141MTLGMIWTIIL151
Sites: -

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	O43707	70	QIENIDEDFRDGLKLML	CCCCHHHHCCHHHHHHH	c1c-5	boundary	boundary\|CH;	0.0	Medium: -39.628	cosmic_spacer R79Q;G81E;G81R;	Medium\|
2	nes_ord	O43707	74	IDEDFRDGLKLMLLLEV	HHHHCCHHHHHHHHHHH	c1c-4	ORD	middle\|CH;	0.0	Weak: -30.62	cosmic_phi R79Q;G81E;G81R;L86P;L87F;E89K;
3	nes_ord	O43707	74	IDEDFRDGLKLMLLLE	HHHHCCHHHHHHHHHH	c1a-4	ORD	middle\|CH;	0.0	Medium: -35.097	cosmic_spacer_Pro R79Q;G81E;G81R;L86P;L87F;
4	nes_ord	O43707	80	DGLKLMLLLEVISGER	HHHHHHHHHHHHHCCC	c1aR-4	ORD	middle\|CH;	0.0	Bad: -25.772	cosmic_phi_to_LIVMF L86P;L87F;E89K;R95W;
5	nes_ord	O43707	108	KINNVNKALDFIAS	EHHHHHHHHHHHHH	c3-4	ORD	middle\|CH;	0.0	Bad: -27.375
6	ExpNES_diso	O43707	131	AEEIVDGNAKMTLGMIW +++++++	HHHHCCCCCCHHHHHHH	c1c-AT-4	boundary	boundary\|CH; boundary\|CH;	0.0	NA	cosmic_spacer E133D;D136Y;G144R;
7	ExpNES_diso	O43707	142	TLGMIWTIILRFAIQD ++++++++++	HHHHHHHHHHHHHCCC	c1a-5	boundary	boundary\|CH; boundary\|CH;	0.0	Medium: -33.464	cosmic_phi_to_LIVMF G144R;W147S;R152S;I155L;	Medium\|
8	nes_diso	O43707	179	PYKNVNVQNFHISW	CCCCCCCCCCCCCC	c2-4	boundary	boundary\|CH; boundary\|CH;	0.0	Bad: -23.297
9	nes_diso	O43707	217	KDDPVTNLNNAFEVAE	CCCHHHHHHHHHHHHH	c1d-4	boundary	middle\|CH;	0.0	Bad: -17.426	cosmic_spacer E229K;
10	nes_ord	O43707	273	KAETAANRICKVLAVNQ	HHHHHHHHHHHHHHHHH	c1c-AT-4	ORD	boundary\|CH; boundary\|Spectrin; boundary\|SPEC;	0.0	NA
11	nes_diso	O43707	324	TIQEMQQKLEDFRD	CHHHHHHHHHHHHH	c3-4	boundary	middle\|Spectrin; middle\|SPEC;	0.0	Bad: -24.588	cosmic_phi_to_LIVMF E327K;F335V;
12	nes_diso	O43707	353	LEINFNTLQTKLRLSN	HHHHHHHHHHHHHHCC	c1aR-4	boundary	middle\|Spectrin; middle\|SPEC;	0.0	Medium: -38.483	cosmic_spacer T359M;R365C;	Medium\|
13	nes_ord	O43707	472	QIAAIAQELNELDY	HHHHHHHHHHHCCC	c3-4	ORD	middle\|SPEC; middle\|Spectrin; middle\|SPEC;	0.0	Weak: -30.74	cosmic_spacer D484N;
14	nes_ord	O43707	519	TEKQLEAIDQLHLEY	HHHHHHHHHHHHHHH	c1b-4	ORD	boundary\|SPEC; boundary\|Spectrin; middle\|SPEC; boundary\|Spectrin; boundary\|SPEC;	0.0	Bad: -25.823
15	nes_ord	O43707	543	WMESAMEDLQDMFIVHT	HHHHHHHHHHCCCCCCC	c1c-AT-5	ORD	boundary\|SPEC; boundary\|Spectrin; middle\|SPEC; boundary\|Spectrin; boundary\|SPEC;	0.0	NA	cosmic_spacer S546T;M548V;E549D;F555L;V557I;
16	nes_ord	O43707	543	WMESAMEDLQDMFIVH	HHHHHHHHHHCCCCCC	c1a-AT-5	ORD	boundary\|SPEC; boundary\|Spectrin; middle\|SPEC; boundary\|Spectrin; boundary\|SPEC;	0.0	NA	cosmic_spacer S546T;M548V;E549D;F555L;V557I;
17	nes_ord	O43707	544	MESAMEDLQDMFIVHT	HHHHHHHHHCCCCCCC	c1d-4	ORD	boundary\|SPEC; boundary\|Spectrin; middle\|SPEC; boundary\|Spectrin; boundary\|SPEC;	0.0	NA	cosmic_phi_to_LIVMF S546T;M548V;E549D;F555L;V557I;
18	nes_ord	O43707	544	MESAMEDLQDMFIVH	HHHHHHHHHCCCCCC	c1b-4	ORD	boundary\|SPEC; boundary\|Spectrin; middle\|SPEC; boundary\|Spectrin; boundary\|SPEC;	0.0	NA	cosmic_phi_to_LIVMF S546T;M548V;E549D;F555L;V557I;
19	nes_diso	O43707	665	IQTKMEEIGRISIEM	HHHHHHHHHHHHCCC	c1b-4	boundary	boundary\|SPEC; boundary\|Spectrin; middle\|SPEC; boundary\|Spectrin;	0.0	Bad: -29.94	cosmic_spacer R674C;
20	nes_diso	O43707	675	ISIEMNGTLEDQLSHLK	HHCCCCCCHHHHHHHHH	c1cR-5	boundary	boundary\|SPEC; boundary\|Spectrin; middle\|SPEC; middle\|Spectrin;	0.0	Weak: -30.681	cosmic_spacer G681E;D685G;	Weak\|
21	nes_ord	O43707	721	DNKHTNYTMEHIRVGW	CCHHHHHHHHHHHHHH	c1a-AT-4	ORD	boundary\|SPEC; boundary\|Spectrin;	0.0	NA	cosmic_spacer T725N;N726D;N726Y;R733H;V734M;
22	nes_diso	O43707	739	LLTTIARTINEVEN	HHHHHHHHHHHHHH	c3-4	boundary	boundary\|SPEC; boundary\|Spectrin; boundary\|EFh;	0.0	Bad: -21.834	cosmic_spacer E749K;
23	nes_diso	O43707	766	QMQEFRASFNHFDK	HHHHHHHHHHHHCC	c3-4	boundary	boundary\|SPEC; boundary\|Spectrin; boundary\|EFh;	0.0	Weak: -30.292	cosmic_spacer R771W;	Weak\|
24	nes_diso	O43707	786	GPEEFKACLISLGY	CHHHHHHHHHHCCC	c2-AT-4	boundary	boundary\|SPEC; boundary\|EFh;	0.0	NA	cosmic_spacer P787L;
25	nes_diso	O43707	824	GLVTFQAFIDFMSRET	CEEEHHHHHHHHHHHC	c1aR-4	boundary	boundary\|EFh; boundary\|EFhand_Ca_insen superfamily;	0.0	Bad: -26.696	cosmic_spacer S836L;R837Q;E838K;
26	nes_diso	O43707	824	GLVTFQAFIDFMSR	CEEEHHHHHHHHHH	c3-4	boundary	boundary\|EFh; boundary\|EFhand_Ca_insen superfamily;	0.14	Bad: -23.743	cosmic_spacer S836L;
27	nes_diso	O43707	840	TDTDTADQVIASFKVLA	CCCCCHHHHHHHHHHHH	c1c-AT-4	boundary	boundary\|EFh; boundary\|EFhand_Ca_insen superfamily;	0.0	NA	cosmic_spacer D841E;T842M;A850T;S851Y;S851F;
28	nes_diso	O43707	841	DTDTADQVIASFKVLA	CCCCHHHHHHHHHHHH	c1a-AT-4	__	boundary\|EFh; boundary\|EFhand_Ca_insen superfamily;	0.0	NA	cosmic_spacer T842M;A850T;S851Y;S851F;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.