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P11388_TOP2A | DNA topoisomerase 2-alpha   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:121 validNES:P136
  • PMIDs: 12821127;17182034;15173319
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive, Binds CRM1
  • Mutation(export): F1022A/L1025A, L1025A/L1027A, I1059A/I1063A
  • Mutation(bind): Unknown
  • Functional seq: 1018ILRDFFELRLK1028,1054FILEKIDGKIIIE1066
  • Sites: 1017-1028; 1054-1066


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P11388 2 EVSPLQPVNENMQVNK CCCCCCCCCHHCCCCC c1d-5 DISO boundary|PTZ00108; 0.0 Medium: -34.829 cosmic_spacer Medium|
2 nes_diso P11388 34 YQKKTQLEHILLRP HHHHHHHHHHHHCC c2-AT-4 __ boundary|PTZ00108; 0.0 NA cosmic_spacer
3 nes_diso P11388 45 LRPDTYIGSVELVT HCCCCCCCCCCEEE c2-AT-4 boundary boundary|PTZ00108; boundary|HATPase_TopII-like; 0.0 NA
4 nes_beta_diso P11388 52 GSVELVTQQMWVYD CCCCEEEEEEEEEE c2-AT-4 boundary middle|PTZ00108; boundary|HATPase_TopII-like; 0.86 NA
5 nes_diso P11388 77 FVPGLYKIFDEILVNA ECCHHHHHHHHHHHHH c1a-5 boundary middle|PTZ00108; boundary|HATPase_TopII-like; 0.0 Medium: -34.221 Medium|
6 nes_diso P11388 124 GIPVVEHKVEKMYVPA CCCCEECCCCCCCHHH c1a-5 boundary middle|PTZ00108; middle|HATPase_TopII-like; 0.29 Bad: -29.507 cosmic_spacer
7 nes_diso P11388 165 YGAKLCNIFSTKFTVET CCHHHHCCCCCEEEEEE c1c-4 boundary middle|PTZ00108; middle|HATPase_TopII-like; 0.12 Medium: -39.463 cosmic_spacer Medium|
8 nes_diso P11388 215 TCITFQPDLSKFKMQS EEEEEEECHHHHCCCC c1a-4 boundary middle|PTZ00108; boundary|HATPase_TopII-like; 0.43 Bad: -27.853 cosmic_phi_to_LIVMF
9 nes_ord P11388 227 KMQSLDKDIVALMVRR CCCCCCHHHHHHHHHH c1a-5 ORD middle|PTZ00108; boundary|HATPase_TopII-like; 0.0 Weak: -31.534 cosmic_phi_to_LIVMF
10 nes_ord P11388 242 RAYDIAGSTKDVKVFL HHHHHHHCCCCCEEEE c1a-AT-4 ORD middle|PTZ00108; boundary|HATPase_TopII-like; boundary|TopoIIA_Trans_ScTopoIIA; 0.0 NA cosmic_spacer
11 nes_ord P11388 260 NKLPVKGFRSYVDMYL EECCCCCHHHHHHHHH c1d-4 ORD middle|PTZ00108; boundary|TopoIIA_Trans_ScTopoIIA; 0.0 Bad: -17.476 cosmic_phi_to_LIVMF
12 nes_diso P11388 326 VDYVADQIVTKLVDVVK HHHHHHHHHHHHHHHHH c1c-AT-4 __ middle|PTZ00108; middle|TopoIIA_Trans_ScTopoIIA; 0.0 NA cosmic_spacer
13 nes_diso P11388 369 ENPTFDSQTKENMTLQP CCCCCCCCCCCCCCCCC c1c-AT-4 boundary middle|PTZ00108; middle|TopoIIA_Trans_ScTopoIIA; 0.0 NA
14 nes_diso P11388 464 SAKTLAVSGLGVVG HHHHHHHHCCCCCC c2-4 DISO middle|PTZ00108; boundary|TOPRIM_TopoIIA; 0.0 Medium: -36.515 cosmic_spacer Medium|
15 nes_diso P11388 482 GVFPLRGKILNVRE EEEECCCCEECCCC c3-4 boundary middle|PTZ00108; middle|TOPRIM_TopoIIA; 0.43 Bad: -21.541 cosmic_phi
16 nes_diso P11388 503 ENAEINNIIKIVGLQY HCHHHHHHHHHHCCCC c1a-4 boundary middle|PTZ00108; middle|TOPRIM_TopoIIA; 0.0 Bad: -23.642
17 nes_beta_ord P11388 569 FLEEFITPIVKVSK CEEEEECCEEEEEC c3-4 ORD middle|PTZ00108; boundary|TOPRIM_TopoIIA; boundary|TOPRIM_C; 0.71 Bad: -21.573 cosmic_spacer
18 nes_diso P11388 743 KVAQLAGSVAEMSS EHHHHHHHHHHHHH c3-4 boundary middle|PTZ00108; boundary|TOPRIM_C; middle|TOP4c; 0.0 Medium: -34.621 Medium|
19 nes_diso P11388 758 HHGEMSLMMTIINLAQ CCHHHHHHHHHHHHHH c1a-4 DISO middle|PTZ00108; middle|TOP4c; 0.0 Weak: -32.772 Weak|
20 nes_diso P11388 760 GEMSLMMTIINLAQ HHHHHHHHHHHHHH c2-4 DISO middle|PTZ00108; middle|TOP4c; 0.0 Bad: -27.156
21 nes_diso P11388 764 LMMTIINLAQNFVGSN HHHHHHHHHHCCCCCC c1aR-4 DISO middle|PTZ00108; middle|TOP4c; 0.0 Weak: -31.201 Weak|
22 nes_diso P11388 805 YIFTMLSSLARLLFPP HHHHHCHHHHHHHCCC c1a-5 boundary middle|PTZ00108; middle|TOP4c; 0.0 Bad: -28.907 cosmic_phi_to_LIVMF
23 low complexity P11388 841 YIPIIPMVLING ECCCCCEEEECC c2-rev boundary middle|PTZ00108; middle|TOP4c; 0.5 Medium: -36.037
24 nes_diso P11388 865 PNFDVREIVNNIRRLM CCCCHHHHHHHHHHHH c1aR-5 boundary middle|PTZ00108; middle|TOP4c; 0.0 Medium: -33.958 cosmic_spacer Medium|
25 nes_diso P11388 868 DVREIVNNIRRLMD CHHHHHHHHHHHHC c3-4 boundary middle|PTZ00108; middle|TOP4c; 0.0 Weak: -30.004 cosmic_spacer Weak|
26 nes_diso P11388 958 REYHTDTTVKFVVKMTE HHHCCCCEEEEEEEECH c1c-AT-4 boundary middle|PTZ00108; middle|TOP4c; 0.62 NA cosmic_spacer
27 ExpNES_diso P11388 1014 TVLDILRDFFELRLKY
   +++++*++*+*+ 		 CHHHHHHHHHHHHHHH c1a-5 boundary middle|PTZ00108; middle|TOP4c; 0.0 Medium: -36.468 cosmic_spacer Medium|
28 ExpNES_diso P11388 1051 QARFILEKIDGKIIIEN
   +++++*+++*+++ 		 HHHHHHHHHCCCCEECC c1c-4 boundary middle|PTZ00108; middle|TOP4c; 0.0 Medium: -34.752 cosmic_phi Medium|
29 ExpNES_diso P11388 1052 ARFILEKIDGKIIIEN
  +++++*+++*+++ 		 HHHHHHHHCCCCEECC c1aR-4 boundary middle|PTZ00108; middle|TOP4c; 0.0 Medium: -35.053 cosmic_phi Medium|
30 nes_diso P11388 1170 DLATFIEELEAVEA HHHHHHHHHHHHHH c3-4 boundary middle|PTZ00108; boundary|TOP4c; 0.0 Weak: -30.821 Weak|
31 nes_diso P11388 1251 DGVELEGLKQRLEKKQ CCCCHHHHHHHHHHHC c1aR-4 DISO middle|PTZ00108; 0.0 Bad: -23.562
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.