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P12004_PCNA | Proliferating cell nuclear antigen   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:250
  • PMIDs: 22846997
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L12A/L16A/L19A/L22A
  • Mutation(bind): Unknown
  • Functional seq: 11ILKKVLEALKDLI23
  • Sites: -


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 ExpNES_diso P12004 11 ILKKVLEALKDLIN
+*+++*++*++*+ 		 HHHHHHHHHHHHHC c3-4 terminal boundary|pcna; boundary|DnaN; 0.0 Medium: -36.108 Medium|
2 nes_beta_ord P12004 41 DSSHVSLVQLTLRS CCCCCEEEEEEECC c2-4 ORD middle|pcna; middle|DnaN; 0.71 Weak: -30.8 cosmic_phi
3 nes_ord P12004 68 MGVNLTSMSKILKCAG EEEEHHHHHHHHHHCC c1aR-4 ORD middle|pcna; middle|DnaN; 0.0 Bad: -29.261 cosmic_phi_to_LIVMF
4 nes_ord P12004 115 EMKLMDLDVEQLGIPE EEECCCCCHHHCCCCC c1a-5 ORD middle|pcna; middle|DnaN; 0.0 Bad: -27.479
5 nes_ord P12004 143 EFARICRDLSHIGD HHHHHHHHHHHCCC c3-4 ORD middle|pcna; middle|DnaN; 0.0 Bad: -22.738 cosmic_phi_to_LIVMF
6 nes_beta_diso P12004 155 GDAVVISCAKDGVKFSA CCEEEEEEECCEEEEEE c1c-AT-4 boundary middle|pcna; middle|DnaN; 0.75 NA cosmic_spacer
7 nes_diso P12004 195 VTIEMNEPVQLTFALRY EEECCCCCEEEEEEHHH c1c-4 boundary middle|pcna; middle|DnaN; 0.5 Bad: -27.354 cosmic_spacer
8 nes_diso P12004 201 EPVQLTFALRYLNFFT CCEEEEEEHHHHHHHH c1a-4 boundary middle|pcna; middle|DnaN; 0.57 Medium: -35.488 cosmic_phi_to_LIVMF Medium|
9 nes_diso P12004 203 VQLTFALRYLNFFT EEEEEEHHHHHHHH c2-4 boundary middle|pcna; middle|DnaN; 0.43 Medium: -39.332 cosmic_spacer Medium|
10 nes_diso P12004 225 VTLSMSADVPLVVEYKI EEEEECCCCCEEEEEEE c1cR-4 boundary boundary|pcna; boundary|DnaN; 0.38 Bad: -25.99
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.