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P25054_APC | Adenomatous polyposis coli protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)
  • Reference DB: NESdb:47 validNES:P041
  • PMIDs: 11035805;10980707;10984057;12070164;15678162
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive, Binds CRM1
  • Mutation(export): L75A/L77A, L172A/L174A, L1506A/L1509A/L1511A, L1657A/L1660A, L2027A/L2030A
  • Mutation(bind): Unknown
  • Functional seq: 68LLERLKELNL77,165LTKRIDSLPL174,1494ESTPDGFSCSSSLSALSLDEP1514,1645EGTPINFSTATSLSDLTIESP1665,2015EDTPVCFSRNSSLSSLSIDSE2035
  • Sites: 68-77; 165-174


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P25054 5 SYDQLLKQVEALKMEN HHHHHHHHHHHHHHHC c1a-4 DISO boundary|APC_N_CC; 0.0 Medium: -35.833 Medium|
2 ExpNES_diso P25054 64 GQIDLLERLKELNLDS
    +++++++*+*  		 HHHHHHHHHHHHCCCC c1a-4 DISO boundary|APC_N_CC; 0.0 Weak: -32.24 Weak|
3 nes_diso P25054 185 TRRQLEYEARQIRVAM HHHHHHHHHHHHHHHH c1a-AT-4 DISO boundary|Suppressor_APC; 0.0 NA
4 nes_diso P25054 220 RIQQIEKDILRIRQ HHHHHHHHHHHHHH c3-4 DISO boundary|Suppressor_APC; 0.0 Bad: -23.673
5 nes_diso P25054 300 APRRLTSHLGTKVEMVY CCCCCCCCCCCCHHEEE c1c-4 DISO 0.0 Bad: -29.606
6 nes_diso P25054 311 KVEMVYSLLSMLGT CHHEEEEHHHHHCC c3-4 DISO boundary|ARM; 0.57 NA
7 nes_diso P25054 442 VEHQICPAVCVLMKLSF CHHCCCHHHHHHHCCCC c1c-4 DISO 0.0 Bad: -28.16
8 nes_diso P25054 468 ELGGLQAIAELLQVDC HHHHHHHHHHHHHHHH c1a-AT-5 DISO 0.0 NA
9 nes_diso P25054 468 ELGGLQAIAELLQVDC HHHHHHHHHHHHHHHH c1d-5 DISO 0.0 NA
10 nes_diso P25054 477 ELLQVDCEMYGLTN HHHHHHHHHHCCCC c3-4 boundary 0.0 Medium: -35.943 Medium|
11 nes_diso P25054 499 RYAGMALTNLTFGD HHHHHHHHHCCCCC c2-4 boundary boundary|VATPase_H superfamily; 0.0 Bad: -27.828
12 nes_diso P25054 518 TLCSMKGCMRALVA HHHHCHHHHHHHHH c3-4 boundary small|ARM; boundary|VATPase_H superfamily; 0.0 Medium: -39.686 Medium|
13 nes_diso P25054 565 EVGSVKALMECALEVKK HCCHHHHHHHHHHHCCC c1c-5 DISO middle|VATPase_H superfamily; 0.0 Medium: -35.777 Medium|
14 nes_diso P25054 605 DICAVDGALAFLVG HHHHCCCHHHHHHH c3-4 DISO middle|VATPase_H superfamily; 0.0 Medium: -37.588 Medium|
15 nes_diso P25054 693 KDQEALWDMGAVSMLK HHHHHHHHCCHHHHHH c1a-AT-4 DISO middle|VATPase_H superfamily; small|Arm; 0.0 NA
16 nes_diso P25054 694 DQEALWDMGAVSMLK HHHHHHHCCHHHHHH c1b-4 DISO middle|VATPase_H superfamily; small|Arm; 0.0 NA
17 nes_diso P25054 810 RSDNFNTGNMTVLS CCCCCCCCCCCCCC c2-AT-4 DISO middle|Arm_APC_u3; 0.0 NA
18 nes_diso P25054 886 QIAKVMEEVSAIHT HHHHHHHHHHHHCC c3-4 DISO middle|Arm_APC_u3; 0.0 Bad: -29.746
19 nes_diso P25054 1300 NTLQIAEIKEKIGTRS CCCCHHHHHHHCCCCC c1aR-4 DISO boundary|APC_u9; 0.0 Bad: -20.504
20 nes_diso P25054 1468 KQAAVNAAVQRVQVLP CCHHCCHHHHCCCCCC c1a-4 DISO 0.0 Weak: -30.214 Weak|
21 nes_diso P25054 1477 QRVQVLPDADTLLHFAT HCCCCCCCCCCCCCCCC c1c-AT-4 DISO 0.0 NA
22 ExpNES_diso P25054 1649 INFSTATSLSDLTIES
        *  *    		 CCCCCCCCCCCCCCCC c1a-AT-4 DISO boundary|APC_u13; 0.0 NA
23 nes_diso P25054 1739 KPFRVKKIMDQVQQAS CCCCHHHHHHHHHHHH c1aR-4 DISO boundary|APC_u13; boundary|APC_u14; 0.0 Bad: -27.399
24 nes_diso P25054 1943 RGAATDEKLQNFAIEN CCCCCCHHHHCCCCCC c1a-AT-4 DISO boundary|APC_u15; 0.0 NA
25 nes_diso P25054 2064 SPRNMGGILGEDLTLDL CCCCCCCCCCCCCCCCC c1c-4 DISO 0.0 Medium: -33.782 Medium|
26 nes_diso P25054 2131 DSDSILSLKSGISLGS CCCCHHHCCCCCCCCC c1d-4 DISO 0.0 Bad: -23.59
27 nes_diso P25054 2707 GNGSVPMRTVGLEN CCCCCCCCCCCCCC c2-4 DISO middle|EB1_binding; 0.0 Medium: -37.254 Medium|
28 nes_diso P25054 2714 RTVGLENRLNSFIQVDA CCCCCCCCCCCCCCCCC c1c-4 DISO middle|EB1_binding; 0.0 Weak: -31.711 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.