HOME Exp-NES Cancer-NES Human-NES Documentation Contact
P51587_BRCA2 | Breast cancer type 2 susceptibility protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)
  • Reference DB: NESdb:169 validNES:P137
  • PMIDs: 18059333
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L1384A, L1384A/L1387A
  • Mutation(bind): Unknown
  • Functional seq: 1383DLSDLTFLEVA1393
  • Sites: 1383-1393


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P51587 91 YQSPVKELDKFKLDL CCCCCCCCCHHHCCC c1b-4 DISO 0.0 Bad: -24.66 cosmic_phi
2 nes_diso P51587 196 SSLATPPTLSSTVLIVR CCCCCCCCCCCEEEEEC c1c-AT-4 DISO 0.12 NA cosmic_spacer
3 nes_diso P51587 402 GLNGAQMEKIPLLH CCCCCCCCCCCCCC c2-AT-5 DISO 0.0 NA
4 nes_diso P51587 470 EEQHLESHTDCILAVKQ CHHCCCCCCHHHHHHHH c1c-AT-4 DISO 0.0 NA
5 nes_diso P51587 497 SFQGIKKSIFRIRE HHCCCCCEEEEEEC c3-4 DISO 0.43 Bad: -20.807
6 nes_diso P51587 770 ILTPTSKDVLSNLVMIS CCCCCCCCCCCCEEEEE c1c-AT-5 DISO 0.0 NA
7 nes_diso P51587 864 QEETTSISKITVNP CEECCCEEEEECCC c2-AT-4 DISO 0.57 NA cosmic_spacer
8 nes_diso P51587 963 IKMTLGQDLKSDISLNI HCCCCCCCCCCCCCCCC c1c-4 DISO 0.0 Bad: -26.041
9 nes_diso P51587 1039 PTSLACVEIVNTLALDN CCCCCCEEEECCHHHHH c1c-AT-4 DISO 0.5 NA cosmic_spacer
10 nes_diso P51587 1041 SLACVEIVNTLALDN CCCCEEEECCHHHHH c1b-5 DISO 0.57 NA cosmic_spacer
11 nes_diso P51587 1064 SINTVSAHLQSSVVVSD CCCCCCCCCCCCCEECC c1c-5 DISO 0.0 Medium: -36.666 Medium|
12 ExpNES_diso P51587 1376 GNTQIKEDLSDLTFLE
       +*++*++++		 CCCCCCCCHHHCCHHH c1a-4 DISO 0.0 Weak: -32.952 cosmic_phi_to_LIVMF Weak|
13 nes_diso P51587 1435 NISVAKESFNKIVNFFD CCEECHHHHHHHHHHHC c1c-AT-5 DISO small|BRCA2; 0.0 NA
14 nes_diso P51587 1458 HNFSLNSELHSDIRKNK CCCCCCCHHCCCCCCCC c1cR-4 DISO 0.0 Bad: -25.691 cosmic_spacer
15 nes_diso P51587 1625 ENLKTSKSIFLKVKVHE CCCCCCCCEEEEEEEEC c1c-AT-4 DISO 0.5 NA
16 nes_diso P51587 2003 IEDSTKQVFSKVLFKS HCCCCCCCCCHHHCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
17 nes_diso P51587 2065 QVSILESSLHKVKG EEEECHHHHHHHHH c3-4 DISO small|BRCA2; 0.14 Bad: -28.883 cosmic_spacer
18 nes_diso P51587 2072 SLHKVKGVLEEFDLIR HHHHHHHHHHHHHHHH c1a-5 DISO 0.0 Bad: -29.267
19 nes_diso P51587 2165 LVLGTKVSLVENIHVLG HHHCHHHHHHHHHHHCC c1c-AT-5 DISO 0.0 NA
20 nes_diso P51587 2167 LGTKVSLVENIHVLG HCHHHHHHHHHHHCC c1b-4 DISO 0.0 NA
21 nes_diso P51587 2219 SENYFETEAVEIAK HHHHHHHHHHHHHH c2-AT-4 DISO 0.0 NA cosmic_spacer
22 nes_diso P51587 2316 KDRRLFMHHVSLEP CCCCCCCCCCCCCC c2-4 DISO 0.0 Weak: -30.256 cosmic_spacer Weak|
23 nes_diso P51587 2415 HFHRVEQCVRNINLEE CCCCCCCCCCCCCCHH c1a-5 DISO 0.0 Bad: -28.949
24 nes_beta_diso P51587 2682 AAKTLVLCVSDIISLSA HHCEEEEEEEEEEECCC c1c-4 boundary boundary|BRCA-2_helical; boundary|BRCA-2_OB1; 1.0 NA cosmic_spacer
25 nes_diso P51587 3053 EPLHFSKFLDPDFQPSC EEEEHHHCCCCCCCCCC c1cR-4 boundary boundary|BRCA2DBD_OB2; boundary|BRCA-2_OB3; 0.0 NA cosmic_phi_to_LIVMF
26 nes_ord P51587 3068 SCSEVDLIGFVVSV CCCCCCEEEEEEEE c2-4 ORD boundary|BRCA2DBD_OB2; boundary|BRCA-2_OB3; 0.57 NA
27 nes_beta_ord P51587 3070 SEVDLIGFVVSVVKKT CCCCEEEEEEEEECCC c1aR-4 ORD boundary|BRCA2DBD_OB2; boundary|BRCA-2_OB3; 1.0 NA
28 low complexity P51587 3071 EVDLIGFVVSVVKK CCCEEEEEEEEECC c3-4 ORD boundary|BRCA2DBD_OB2; boundary|BRCA-2_OB3; 1.0 NA
29 nes_beta_diso P51587 3096 ECYNLLAIKFWIDL CCCCEEEEEEECCC c2-AT-4 boundary middle|BRCA-2_OB3; 0.86 NA
30 nes_diso P51587 3131 SKSGLLTLFAGDFSVFS CCCCCEEEEECCCEEEE c1c-4 boundary middle|BRCA-2_OB3; 0.62 NA cosmic_phi
31 nes_diso P51587 3135 LLTLFAGDFSVFSA CEEEEECCCEEEEC c3-4 boundary middle|BRCA-2_OB3; 0.57 NA cosmic_phi
32 nes_diso P51587 3158 TFNKMKNTVENIDILC HHHHHHHHHHCHHHHH c1a-5 boundary boundary|BRCA-2_OB3; 0.0 NA cosmic_spacer
33 nes_diso P51587 3203 YTAQIIPGTGNKLLMSS CCCCCCCCCCCCCCCCC c1c-AT-4 DISO boundary|BRCA-2_OB3; 0.0 NA
34 nes_diso P51587 3321 QMTPFKKFNEISLLE CCCCCCCCCCCCCCC c1b-5 DISO 0.0 Weak: -30.526 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.