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P56524_HDAC4 | Histone deacetylase 4   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:62 validNES:P070
  • PMIDs: 11486037
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): V1056A, M1059A, L1062A, V1064A, V1066A
  • Mutation(bind): Unknown
  • Functional seq: 1044EAQTCENEEAETVTAMASLSVGVKPA1069
  • Sites: 1044-1069


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P56524 45 SAVPMDLRLDHQFSLPV CCCCCCCCCCCCCCCCC c1c-4 DISO 0.0 Bad: -18.236 cosmic_phi_to_LIVMF
2 nes_diso P56524 167 ASTEVKMKLQEFVLNK CCHHHHHHHHHHHHHH c1a-4 DISO boundary|ClassIIa_HDAC4_Gln-rich-N; boundary|HDAC4_Gln; 0.0 Bad: -29.2 cosmic_spacer
3 nes_diso P56524 169 TEVKMKLQEFVLNK HHHHHHHHHHHHHH c2-4 DISO boundary|ClassIIa_HDAC4_Gln-rich-N; boundary|HDAC4_Gln; 0.0 Bad: -26.387 cosmic_spacer
4 nes_diso P56524 377 TLPALQQRLSLFPG CCCHHHCCCCCCCC c3-4 DISO 0.0 Bad: -25.93 cosmic_spacer_Pro
5 nes_diso P56524 405 DGGAAHSPLLQHMVLLE CCCCCCCHHHHHHHHCC c1c-AT-4 DISO 0.0 NA cosmic_spacer
6 nes_diso P56524 427 APLVTGLGALPLHA CCCCCCCCCCCCCC c2-AT-4 DISO 0.0 NA
7 nes_diso P56524 608 YQASMEAAGIPVSF HHHHHHHCCCCCCC c2-AT-4 DISO 0.0 NA
8 nes_diso P56524 649 KPRFTTGLVYDTLMLKH CCCCCEEEECCHHHHHC c1c-AT-4 DISO boundary|HDAC4; 0.5 NA cosmic_spacer
9 nes_diso P56524 734 DSKKLLGSLASVFVRL CHHHHHHCHHHHHHHH c1a-4 boundary middle|HDAC4; 0.0 Medium: -35.367 cosmic_phi_to_LIVMF Medium|
10 nes_diso P56524 738 LLGSLASVFVRLPC HHHCHHHHHHHHCC c3-4 boundary middle|HDAC4; 0.0 Medium: -37.248 cosmic_phi_to_LIVMF Medium|
11 nes_diso P56524 771 ARLAVGCVVELVFKVAT HHHHHHHHHHHHHHHHC c1c-4 boundary middle|HDAC4; 0.0 Weak: -32.915 cosmic_spacer Weak|
12 nes_diso P56524 771 ARLAVGCVVELVFKVA HHHHHHHHHHHHHHHH c1aR-5 boundary middle|HDAC4; 0.0 Weak: -32.818 Weak|
13 nes_diso P56524 774 AVGCVVELVFKVAT HHHHHHHHHHHHHC c3-4 __ middle|HDAC4; 0.0 Medium: -39.2 Medium|
14 nes_ord P56524 782 VFKVATGELKNGFAVVR HHHHHCCCCCCEEEEEC c1c-AT-5 ORD middle|HDAC4; 0.12 NA
15 nes_ord P56524 808 TPMGFCYFNSVAVAA CCCCCCCCCHHHHHH c1b-4 ORD middle|HDAC4; 0.0 Bad: -25.753 cosmic_spacer
16 nes_ord P56524 817 SVAVAAKLLQQRLSVSK HHHHHHHHHHHHHCCCE c1c-AT-5 ORD middle|HDAC4; 0.0 NA cosmic_spacer
17 nes_ord P56524 825 LQQRLSVSKILIVD HHHHHCCCEEEEEE c2-4 ORD middle|HDAC4; 0.29 Bad: -28.546 cosmic_phi_to_LIVMF
18 nes_ord P56524 878 DEVGTGPGVGFNVNMAF CCCCCCCCCCCEEECCC c1c-AT-4 ORD middle|HDAC4; 0.12 NA cosmic_spacer
19 nes_ord P56524 886 VGFNVNMAFTGGLDPPM CCCEEECCCCCCCCCCC c1cR-4 ORD middle|HDAC4; 0.25 Weak: -30.867 cosmic_phi
20 nes_ord P56524 890 VNMAFTGGLDPPMGDAE EECCCCCCCCCCCCCHH c1cR-4 ORD middle|HDAC4; 0.0 Bad: -28.992 cosmic_spacer
21 nes_ord P56524 904 DAEYLAAFRTVVMPI CHHHHHHHHHCHHHH c1b-4 ORD middle|HDAC4; 0.0 Medium: -36.457 cosmic_phi_to_LIVMF
22 nes_ord P56524 925 DVVLVSSGFDAVEG CEEEEECCCCHHCC c3-4 ORD middle|HDAC4; 0.43 Medium: -34.152 cosmic_spacer
23 nes_ord P56524 952 CFGYLTKQLMGLAG HHHHHHHHHHHHHC c3-4 ORD middle|HDAC4; 0.0 Medium: -38.951 cosmic_phi
24 nes_diso P56524 1009 PNANAVRSMEKVMEIHS CCHHHHHHHHHHHHHHH c1c-AT-4 __ middle|HDAC4; 0.0 NA cosmic_spacer
25 nes_diso P56524 1010 NANAVRSMEKVMEIHS CHHHHHHHHHHHHHHH c1d-4 __ middle|HDAC4; 0.0 NA cosmic_spacer
26 ExpNES_diso P56524 1051 EEAETVTAMASLSVGV
+++++*++*++*+*+*		 HHHHHHHHHHHCCCCC c1a-AT-4 DISO boundary|HDAC4; 0.0 NA cosmic_spacer
27 ExpNES_diso P56524 1052 EAETVTAMASLSVGVKP
++++*++*++*+*+*++		 HHHHHHHHHHCCCCCCC c1c-AT-4 DISO boundary|HDAC4; 0.0 NA cosmic_spacer
28 ExpNES_diso P56524 1052 EAETVTAMASLSVGV
++++*++*++*+*+*		 HHHHHHHHHHCCCCC c1b-4 DISO boundary|HDAC4; 0.0 Strong: -41.208 cosmic_spacer Strong|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.