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Q00653_NFKB2 | Nuclear factor NF-kappa-B p100 subunit   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:237
  • PMIDs: 22388891
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L831A/L832A/M838A/L840A
  • Mutation(bind): Unknown
  • Functional seq: Undetermined
  • Sites: -


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q00653 113 QCSELGICAVSVGP CCCCCCEEEEEECC c2-4 boundary middle|RHD-n_NFkB2; 0.57 Weak: -31.948 Weak|
2 nes_diso Q00653 125 GPKDMTAQFNNLGVLH CCCCCEEEECCCCEEC c1a-4 boundary middle|RHD-n_NFkB2; 0.57 Medium: -38.502 Medium|
3 nes_diso Q00653 181 LKKVMDLSIVRLRFSA HHHHCCCCHHEEEEEE c1a-4 boundary middle|RHD-n_NFkB2; 0.14 Bad: -25.394
4 nes_diso Q00653 181 LKKVMDLSIVRLRF HHHHCCCCHHEEEE c2-4 boundary middle|RHD-n_NFkB2; 0.0 Bad: -25.402
5 nes_diso Q00653 183 KVMDLSIVRLRFSAFL HHCCCCHHEEEEEEEE c1aR-5 boundary middle|RHD-n_NFkB2; 0.43 Bad: -28.565
6 nes_diso Q00653 183 KVMDLSIVRLRFSA HHCCCCHHEEEEEE c2-5 boundary middle|RHD-n_NFkB2; 0.29 Medium: -33.745 Medium|
7 nes_beta_diso Q00653 186 DLSIVRLRFSAFLR CCCHHEEEEEEEEE c3-4 boundary middle|RHD-n_NFkB2; 0.71 Medium: -37.391
8 nes_diso Q00653 295 HKMKIERPVTVFLQLKR CCCCCCCCEEEEEEEEE c1c-4 boundary boundary|IPT_NFkappaB; 0.5 Bad: -19.041
9 nes_ord Q00653 506 QIVYVIHHAQDLGVVN HHHHHHHHHCCCCCCC c1a-AT-5 ORD 0.0 NA
10 nes_ord Q00653 515 QDLGVVNLTNHLHQTP CCCCCCCHHCCCCCCH c1aR-4 ORD 0.0 Medium: -33.776
11 nes_ord Q00653 532 HLAVITGQTSVVSFLL HHHHHCCCHHHHHHHH c1a-AT-5 ORD 0.0 NA
12 nes_diso Q00653 636 TALHLATEMEELGLVT CHHHHHHHCCCHHHHH c1a-4 boundary 0.0 Medium: -39.373 Medium|
13 nes_diso Q00653 646 ELGLVTHLVTKLRA CHHHHHHHHHHHCC c3-4 boundary 0.0 Medium: -34.651 Medium|
14 nes_diso Q00653 674 LAAGLGYPTLTRLLLKA HHHHCCCHHHHHHHHHC c1c-AT-4 boundary 0.0 NA
15 nes_diso Q00653 736 LTCSTKVKTLLLNA HCCCHHHHHHHHHC c2-AT-4 DISO 0.0 NA
16 ExpNES_diso Q00653 827 DLAGLLEALSDMGLEE
    **     * *  		 CHHHHHHHHHHCCHHH c1a-5 boundary boundary|Death_NFkB2_p100; 0.0 Medium: -39.284 Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.