Q02880 | DNA topoisomerase 2-beta

Q02880_TOP2B | DNA topoisomerase 2-beta ProteinAtlas Cosmic Proviz Swissmodel

Reference DB: NESdb:95 validNES:P138
PMIDs: 12821127
Species: Homo sapiens (Human)
Evidence: LMB Sensitive
Mutation(export): T1035 by Deletion/V1036 by Deletion
Mutation(bind): Unknown
Functional seq: 1034ETVQDILKEFF1044
Sites: 1039-1049

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	TOTALscore(Ebind\|Stars)
1	nes_diso	Q02880	55	YQKKTQLEHILLRP	HCCHHHHHHHHHCC	c2-AT-4	__	boundary\|PTZ00108;	0.0	NA
2	nes_diso	Q02880	98	FVPGLYKIFDEILVNA	ECCHHHHHHHHHHHHH	c1a-5	boundary	middle\|PTZ00108; boundary\|HATPase_TopII-like;	0.0	Bad: -26.343
3	nes_diso	Q02880	145	GIPVVEHKVEKVYVPA	CCCCEECCCCCCCHHH	c1a-5	boundary	middle\|PTZ00108; middle\|HATPase_TopII-like;	0.29	Weak: -30.039	Weak\|
4	nes_diso	Q02880	186	YGAKLCNIFSTKFTVET	CCHHHHHHCCCEEEEEE	c1c-4	boundary	middle\|PTZ00108; middle\|HATPase_TopII-like;	0.12	Strong: -42.507	Strong\|
5	nes_diso	Q02880	236	TCITFQPDLSKFKMEK	EEEEEEECHHHHCCCC	c1a-4	boundary	middle\|PTZ00108; boundary\|HATPase_TopII-like;	0.43	Bad: -25.551
6	nes_ord	Q02880	245	SKFKMEKLDKDIVALM	HHHCCCCCCHHHHHHH	c1aR-5	ORD	middle\|PTZ00108; boundary\|HATPase_TopII-like;	0.0	Bad: -24.331
7	nes_ord	Q02880	248	KMEKLDKDIVALMT	CCCCCCHHHHHHHH	c3-4	ORD	middle\|PTZ00108; boundary\|HATPase_TopII-like;	0.0	Weak: -32.191
8	nes_diso	Q02880	281	KKLPVNGFRSYVDLYV	EECCCCCHHHHHHHHH	c1d-4	boundary	middle\|PTZ00108; boundary\|TopoIIA_Trans_ScTopoIIA;	0.0	Bad: -18.966
9	nes_diso	Q02880	347	VDYVVDQVVGKLIEVVK	HHHHHHHHHHHHHHHHH	c1c-4	__	middle\|PTZ00108; middle\|TopoIIA_Trans_ScTopoIIA;	0.0	Bad: -22.45
10	nes_diso	Q02880	350	VVDQVVGKLIEVVK	HHHHHHHHHHHHHH	c3-4	boundary	middle\|PTZ00108; middle\|TopoIIA_Trans_ScTopoIIA;	0.0	Weak: -32.523	Weak\|
11	nes_diso	Q02880	373	KPFQVKNHIWVFINCLI	CHHHHHCCEEEEEEECC	c1cR-5	boundary	middle\|PTZ00108; middle\|TopoIIA_Trans_ScTopoIIA;	0.5	Weak: -30.655	Weak\|
12	nes_diso	Q02880	390	ENPTFDSQTKENMTLQP	CCCCCCCCCCCCCCCCC	c1c-AT-4	boundary	middle\|PTZ00108; middle\|TopoIIA_Trans_ScTopoIIA;	0.0	NA
13	nes_diso	Q02880	485	SAKSLAVSGLGVIG	CHHHHHHHCCCCCC	c2-4	DISO	middle\|PTZ00108; boundary\|TOPRIM_TopoIIA;	0.0	Medium: -35.09	Medium\|
14	nes_diso	Q02880	503	GVFPLRGKILNVRE	EEECCCCCEEECCC	c3-4	boundary	middle\|PTZ00108; middle\|TOPRIM_TopoIIA;	0.29	Bad: -20.798
15	nes_diso	Q02880	524	ENAEINNIIKIVGLQY	HCHHHHHHHHHHCCCC	c1a-4	boundary	middle\|PTZ00108; middle\|TOPRIM_TopoIIA;	0.0	Bad: -26.578
16	nes_diso	Q02880	764	KVAQLAGSVAEMSA	EHHHHHHHHHHHHH	c3-4	boundary	middle\|PTZ00108; boundary\|TOPRIM_C; middle\|TOP4c;	0.0	Medium: -33.475	Medium\|
17	nes_diso	Q02880	781	GEQALMMTIVNLAQ	HHHHHHHHHHHHHH	c2-4	DISO	middle\|PTZ00108; middle\|TOP4c;	0.0	Bad: -21.576
18	nes_diso	Q02880	785	LMMTIVNLAQNFVGSN	HHHHHHHHHHCCCCCC	c1aR-4	DISO	middle\|PTZ00108; middle\|TOP4c;	0.0	Medium: -39.899	Medium\|
19	nes_diso	Q02880	826	YIFTMLSTLARLLFPA	HHHHHHHHHHHHHCCC	c1a-5	boundary	middle\|PTZ00108; middle\|TOP4c;	0.0	Weak: -32.834	Weak\|
20	nes_diso	Q02880	838	LFPAVDDNLLKFLY	HCCCCCCCCCEEEE	c3-4	boundary	middle\|PTZ00108; middle\|TOP4c;	0.0	Bad: -23.307
21	low complexity	Q02880	862	YIPIIPMVLING	ECCCCCEEEECC	c2-rev	boundary	middle\|PTZ00108; middle\|TOP4c;	0.5	Medium: -39.057
22	nes_diso	Q02880	893	IVNNVRRMLDGLDP	HHHHHHHHHCCCCC	c3-4	boundary	middle\|PTZ00108; middle\|TOP4c;	0.0	Weak: -32.851	Weak\|
23	nes_diso	Q02880	979	KEYHTDTTVKFVVKMTE	HHHCCCCEEEEEEEECH	c1c-AT-4	boundary	middle\|PTZ00108; middle\|TOP4c;	0.62	NA
24	ExpNES_diso	Q02880	1035	TVQDILKEFFDLRLSY **+++++++++++++	CHHHHHHHHHHHHHHH	c1a-5	boundary	middle\|PTZ00108; middle\|TOP4c;	0.0	Medium: -38.301	Medium\|
25	nes_diso	Q02880	1072	QARFILEKIQGKITIEN	HHHHHHHHHCCCCEECC	c1c-4	boundary	middle\|PTZ00108; middle\|TOP4c;	0.0	Medium: -33.293	Medium\|
26	nes_diso	Q02880	1073	ARFILEKIQGKITIEN	HHHHHHHHCCCCEECC	c1aR-4	boundary	middle\|PTZ00108; middle\|TOP4c;	0.0	Bad: -27.514
27	nes_diso	Q02880	1139	SGPDFNYILNMSLWS	CCCCCHHHHHCCHHH	c1b-4	DISO	middle\|PTZ00108; middle\|TOP4c;	0.0	Bad: -15.244
28	nes_diso	Q02880	1188	DLAAFVEELDKVES	HHHHHHHHHHHHHH	c3-4	DISO	middle\|PTZ00108; boundary\|TOP4c;	0.0	Bad: -28.437
29	nes_diso	Q02880	1261	KKGDLDTAAVKVEFDE	CCCCCCHHHHHHCCCH	c1a-AT-4	DISO	middle\|PTZ00108;	0.0	NA

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.