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Q13148_TADBP | TAR DNA-binding protein 43   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:193
  • PMIDs: 18305110
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L248A/I249A/I250A
  • Mutation(bind): Unknown
  • Functional seq: Undetermined
  • Sites: -


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q13148 24 GTVLLSTVTAQFPGAC CCEECHHHHHHCCCCC c1aR-4 boundary 0.0 Bad: -26.759 cosmic_phi_to_LIVMF
2 nes_ord Q13148 43 YRNPVSQCMRGVRLVE EECCCCCCCEEEEEEC c1a-4 ORD 0.29 Bad: -23.554 cosmic_phi_to_LIVMF
3 nes_diso Q13148 120 LKEYFSTFGEVLMVQV HHHHHHHCCCEEEEEE c1d-4 boundary boundary|RRM1_TDP43; boundary|RRM; 0.14 NA cosmic_phi_to_LIVMF
4 nes_diso Q13148 120 LKEYFSTFGEVLMVQ HHHHHHHCCCEEEEE c1b-4 boundary boundary|RRM1_TDP43; boundary|RRM; 0.14 NA cosmic_spacer
5 nes_diso Q13148 122 EYFSTFGEVLMVQVKK HHHHHCCCEEEEEEEE c1a-AT-4 boundary boundary|RRM1_TDP43; boundary|RRM; 0.43 NA cosmic_spacer
6 nes_beta_diso Q13148 128 GEVLMVQVKKDLKTGH CCEEEEEEEECCCCCC c1aR-4 boundary middle|RRM1_TDP43; middle|RRM; 0.86 Bad: -26.347 cosmic_spacer
7 nes_ord Q13148 218 MDVFIPKPFRAFAFVT EEEECCCCCEEEEEEE c1a-4 ORD middle|RRM2_TDP43; boundary|RRM; 0.29 Medium: -36.25
8 ExpNES_diso Q13148 244 CGEDLIIKGISVHI
    ***       		 HCCCEEECCEEEEE c2-4 boundary boundary|RRM2_TDP43; boundary|RRM; 0.57 Medium: -36.57 cosmic_phi Medium|
9 ExpNES_beta_diso Q13148 246 EDLIIKGISVHISNAE
  ***           		 CCEEECCEEEEEEECC c1aR-4 boundary boundary|RRM2_TDP43; boundary|RRM; 0.71 Medium: -35.442 cosmic_phi
10 nes_diso Q13148 307 MGGGMNFGAFSINP CCCCCCCCCCCCCH c2-4 DISO 0.0 Weak: -30.2 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.