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Q14994_NR1I3 | Nuclear receptor subfamily 1 group I member 3   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: validNES:P193
  • PMIDs: 17488649
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): -
  • Mutation(bind): -
  • Functional seq: -
  • Sites: 160-210


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q14994 68 LQKCLDAGMRKDMILSA HHHHHHCCCCHHHHCCH c1c-4 DISO boundary|NR_DBD_VDR_like; 0.0 Weak: -32.339 Weak|
2 nes_diso Q14994 76 MRKDMILSAEALALRR CCHHHHCCHHHHHHHH c1a-AT-4 DISO boundary|NR_DBD_VDR_like; boundary|NR_LBD_PXR_like; 0.0 NA
3 nes_diso Q14994 121 HTRHMGTMFEQFVQFRP HHHHCCCCHHHHHCCCC c1c-4 DISO boundary|NR_LBD_PXR_like; 0.0 Weak: -32.852 Weak|
4 nes_diso Q14994 124 HMGTMFEQFVQFRP HCCCCHHHHHCCCC c3-4 DISO boundary|NR_LBD_PXR_like; 0.0 Weak: -31.848 Weak|
5 low complexity Q14994 150 TLAPVLPLVTHFAD
          ....		 CCCCCHHHHHHHHH c3-4 boundary middle|NR_LBD_PXR_like; 0.0 Bad: -27.046
6 nes_diso Q14994 153 PVLPLVTHFADINT
       .......		 CCHHHHHHHHHHHH c3-4 boundary middle|NR_LBD_PXR_like; 0.0 Medium: -36.622 Medium|
7 nes_diso Q14994 164 INTFMVLQVIKFTK
..............		 HHHHHHHHHHHHHH c2-4 boundary middle|NR_LBD_PXR_like; 0.0 Bad: -27.593
8 nes_diso Q14994 168 MVLQVIKFTKDLPVFR
................		 HHHHHHHHHHCCCCHH c1aR-5 boundary middle|NR_LBD_PXR_like; 0.0 Bad: -28.542
9 nes_ord Q14994 195 KGAAVEICHIVLNT
..............		 HHHHHHHHHHHHHH c2-4 ORD middle|NR_LBD_PXR_like; 0.0 Bad: -29.047
10 nes_ord Q14994 228 DGARVSPTVGFQVEFLE CCCCCCCCCHHHHHHHH c1c-4 ORD middle|NR_LBD_PXR_like; 0.0 Bad: -24.453
11 nes_ord Q14994 232 VSPTVGFQVEFLELLF CCCCCHHHHHHHHHHH c1a-4 ORD middle|NR_LBD_PXR_like; 0.0 Bad: -29.641
12 nes_ord Q14994 234 PTVGFQVEFLELLFHF CCCHHHHHHHHHHHHH c1a-4 ORD middle|NR_LBD_PXR_like; 0.0 Medium: -36.273
13 nes_ord Q14994 234 PTVGFQVEFLELLF CCCHHHHHHHHHHH c2-4 ORD middle|NR_LBD_PXR_like; 0.0 Medium: -33.879
14 nes_ord Q14994 236 VGFQVEFLELLFHFHG CHHHHHHHHHHHHHHH c1aR-4 ORD middle|NR_LBD_PXR_like; 0.0 Bad: -26.645
15 nes_ord Q14994 236 VGFQVEFLELLFHF CHHHHHHHHHHHHH c2-4 ORD middle|NR_LBD_PXR_like; 0.0 Bad: -29.605
16 nes_ord Q14994 238 FQVEFLELLFHFHGTL HHHHHHHHHHHHHHHH c1aR-4 ORD middle|NR_LBD_PXR_like; 0.0 Weak: -30.727
17 nes_ord Q14994 245 LLFHFHGTLRKLQLQE HHHHHHHHHHHCCCCH c1a-5 ORD middle|NR_LBD_PXR_like; 0.0 Medium: -35.527
18 nes_ord Q14994 260 EPEYVLLAAMALFS HHHHHHHHHHHHHC c2-4 ORD middle|NR_LBD_PXR_like; 0.0 Weak: -30.155
19 nes_diso Q14994 281 QRDEIDQLQEEMALTL CHHHHHHHHHHHHHHH c1d-4 boundary middle|NR_LBD_PXR_like; 0.0 Medium: -33.673 Medium|
20 nes_diso Q14994 308 RDRFLYAKLLGLLA CCCCHHHHHHHHHH c2-AT-4 boundary middle|NR_LBD_PXR_like; 0.0 NA
21 nes_diso Q14994 315 KLLGLLAELRSINE HHHHHHHHHHHHHH c3-4 boundary middle|NR_LBD_PXR_like; 0.0 Weak: -31.891 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.