HOME Exp-NES Cancer-NES Human-NES Documentation Contact
Q86TB9_PATL1 | Protein PAT1 homolog 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:222 validNES:P165
  • PMIDs: 22090346
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L90A, M93A, I95A
  • Mutation(bind): Unknown
  • Functional seq: Undetermined
  • Sites: 86-95


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 ExpNES_diso Q86TB9 82 HEENLAERLSKMVIEN
    ++++*++*+*  		 CHHCHHHHHHHHCCCC c1a-4 DISO middle|PAT1; 0.0 Medium: -35.794 cosmic_spacer Medium|
2 nes_diso Q86TB9 285 VPGFVGSPLAAMNPKLLQ CCCCCCCCCCCCCCCHHC c4-4 DISO middle|PAT1; 0.0 Medium: -34.65 Medium|
3 nes_diso Q86TB9 409 EKDWVSKIQMMQLQS HHHHHHHHHHHHHCC c1b-4 DISO middle|PAT1; 0.0 Bad: -24.697 cosmic_spacer
4 nes_diso Q86TB9 474 KPVQFEGSLGKLTVSS CCCCCCCCCCCCCCCC c1a-4 DISO middle|PAT1; 0.0 Medium: -33.139 Medium|
5 nes_diso Q86TB9 521 KTLVIIEKTYSLLLDV HHHHHHHHHHHHHHHH c1a-AT-4 DISO middle|PAT1; 0.0 NA cosmic_spacer
6 nes_diso Q86TB9 592 KGKRMVARILPFLS HHHHHHHHHHHHCC c2-AT-4 boundary boundary|PAT1; 0.0 NA cosmic_spacer
7 low complexity Q86TB9 632 VLPCLLSPFSLLLY CCCCHHHHHHHHHH c3-4 boundary boundary|PAT1; 0.0 Bad: -27.866 cosmic_spacer
8 nes_diso Q86TB9 636 LLSPFSLLLYHLPS HHHHHHHHHHHCCH c3-4 boundary boundary|PAT1; 0.0 Bad: -24.497 cosmic_spacer
9 nes_diso Q86TB9 648 PSVSITSLLRQLMNLPQ CHHHHHHHHHHHHCCCC c1c-4 boundary boundary|PAT1; 0.0 Weak: -32.815 cosmic_spacer_Pro Weak|
10 nes_diso Q86TB9 651 SITSLLRQLMNLPQ HHHHHHHHHHCCCC c3-4 boundary 0.0 Bad: -26.245 cosmic_phi
11 nes_diso Q86TB9 672 SNPHLTAVLQNKFGLSL CCCCHHHHCCCHHHHHH c1c-4 boundary 0.0 Bad: -20.351
12 nes_diso Q86TB9 676 LTAVLQNKFGLSLLLIL HHHHCCCHHHHHHHHHH c1c-4 boundary 0.0 Medium: -38.181 Medium|
13 nes_diso Q86TB9 680 LQNKFGLSLLLILLSR CCCHHHHHHHHHHHHH c1a-4 boundary 0.0 Weak: -32.844 Weak|
14 nes_diso Q86TB9 680 LQNKFGLSLLLILL CCCHHHHHHHHHHH c2-4 boundary 0.0 Bad: -28.931
15 nes_diso Q86TB9 682 NKFGLSLLLILLSRGE CHHHHHHHHHHHHHHH c1aR-4 boundary 0.0 Medium: -36.094 Medium|
16 low complexity Q86TB9 682 NKFGLSLLLILLSR CHHHHHHHHHHHHH c2-4 boundary 0.0 Medium: -34.607
17 nes_diso Q86TB9 714 WTEVMFMATRELLRIPQ HHHHHHHHHHHHHCCCH c1c-AT-4 boundary 0.0 NA
18 nes_diso Q86TB9 733 LAKPISIPTNLVSLFS CCCCCCCCCCHHHHHH c1a-AT-4 boundary 0.0 NA cosmic_spacer
19 nes_diso Q86TB9 755 KLNLLETKLQLVQG HHHHHHHHHHHHHC c3-4 boundary 0.0 Bad: -29.478
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.