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Q96D46_NMD3 | 60S ribosomal export protein NMD3   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:3
  • PMIDs: 12773398;12724356
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive, Binds CRM1, Mislocalization in Xpo1-1 temperature sensitive strains
  • Mutation(export): L480A/L484A/L487A, L487A, L480A/L487A, L487A/I489A
  • Mutation(bind): 477RISLAEMLEDLHISQDATGEEGASMLT503 by Deletion
  • Functional seq: 425ARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEMLEDLHISQDATGEEGASMLT503
  • Sites: -


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_ord Q96D46 29 ANICVACLRSKVDISQ CCCCHHHHHCCCCCCC c1d-4 ORD boundary|NMD3; 0.0 Bad: -25.961 cosmic_phi_to_LIVMF
2 nes_ord Q96D46 82 CLKKIKAPLSKVRLVD HHHHHHCCHHCCEEEE c1a-5 ORD middle|NMD3; 0.0 Bad: -24.855 cosmic_phi_to_LIVMF
3 nes_ord Q96D46 117 QKEVMNGAILQQVFVVD EEEEECCCEEEEEEEEE c1c-4 ORD middle|NMD3; 0.62 Bad: -28.754
4 nes_beta_ord Q96D46 128 QVFVVDYVVQSQMCGDC EEEEEEEEEEEEECCCC c1cR-4 ORD middle|NMD3; 1.0 Weak: -32.105 cosmic_spacer
5 nes_ord Q96D46 164 LHKKTFYYLEQLILKY CCHHHHHHHHHHHHHC c1a-AT-4 ORD middle|NMD3; 0.0 NA cosmic_spacer
6 nes_ord Q96D46 165 HKKTFYYLEQLILKY CHHHHHHHHHHHHHC c1b-4 ORD middle|NMD3; 0.0 NA cosmic_spacer
7 nes_beta_ord Q96D46 184 NTLRIKEIHDGLDFYY CEEEEEEECCEEEEEE c1aR-4 ORD middle|NMD3; 0.71 Bad: -23.227 cosmic_phi_to_LIVMF
8 nes_ord Q96D46 261 LAQSLGNMNQICVCI HHHHCCCCCCEEEEE c1b-4 ORD boundary|NMD3; 0.14 Medium: -34.151 cosmic_spacer
9 nes_beta_ord Q96D46 269 NQICVCIRVTSAIHLID CCEEEEEEECCEEEEEC c1c-4 ORD boundary|NMD3; 0.75 Bad: -29.284 cosmic_spacer
10 nes_beta_diso Q96D46 315 EFIVMECSIVQDIKRAA EEEEEEEEEECCCCCCC c1cR-4 boundary 0.75 Bad: -22.222 cosmic_spacer
11 ExpNES_diso Q96D46 476 PRISLAEMLEDLHISQ
.*..*...*..*.*..		 CCCCHHHHHHHCCCCC c1a-4 DISO 0.0 Strong: -44.331 cosmic_spacer Strong|
12 ExpNES_diso Q96D46 476 PRISLAEMLEDLHISQ
.*..*...*..*.*..		 CCCCHHHHHHHCCCCC c1aR-4 DISO 0.0 Strong: -44.851 cosmic_phi_to_LIVMF Strong|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.