Q9BZB8 | Cytoplasmic polyadenylation element-binding protein 1

Q9BZB8_CPEB1 | Cytoplasmic polyadenylation element-binding protein 1 ProteinAtlas Cosmic Proviz Swissmodel

Reference DB: NESdb:150 validNES:P180
PMIDs: 18923137
Species: Homo sapiens (Human)
Evidence: LMB Sensitive
Mutation(export): L99A/L102A/L104A, I202A/L205A/I207A
Mutation(bind): Unknown
Functional seq: Undetermined
Sites: 95-104; 198-207

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	TOTALscore(Ebind\|Stars)
1	nes_diso	Q9BZB8	32	IFRRINAILDNSLDFSR	HHHHHHHHCCCCCCCCC	c1c-5	DISO	middle\|CEBP1_N;	0.0	Bad: -21.61
2	ExpNES_diso	Q9BZB8	91	DANDLCLGLQSLSLTG +++++++*	CHHHHCCHHHHCCCCC	c1a-4	DISO	middle\|CEBP1_N;	0.0	Strong: -40.503	Strong\|
3	ExpNES_diso	Q9BZB8	93	NDLCLGLQSLSLTG +++++++*	HHHCCHHHHCCCCC	c2-4	DISO	middle\|CEBP1_N;	0.0	Medium: -38.328	Medium\|
4	nes_diso	Q9BZB8	127	VLSMLHNPLGNVLG	CCCCCCCCCCCCCC	c3-4	DISO	middle\|CEBP1_N;	0.0	Medium: -35.453	Medium\|
5	ExpNES_diso	Q9BZB8	194	GSDHLSDLISSLRISP +++++++*	CCHHHHHHHHHCCCCC	c1a-4	DISO	middle\|CEBP1_N;	0.0	Medium: -36.331	Medium\|
6	nes_diso	Q9BZB8	311	CKVFLGGVPWDITEAG	CCEEECCCCCCCCHHH	c1aR-4	boundary	boundary\|CEBP1_N; boundary\|RRM1_CPEB1; boundary\|RRM_7;	0.14	Bad: -23.043
7	nes_diso	Q9BZB8	319	PWDITEAGLVNTFRVFG	CCCCCHHHHHHHHHHHC	c1c-AT-4	boundary	boundary\|CEBP1_N; boundary\|RRM1_CPEB1; boundary\|RRM_7;	0.0	NA
8	nes_diso	Q9BZB8	326	GLVNTFRVFGSLSVEW	HHHHHHHHHCCEEEEE	c1a-AT-5	boundary	boundary\|CEBP1_N; boundary\|RRM1_CPEB1; boundary\|RRM_7;	0.0	NA
9	nes_diso	Q9BZB8	327	LVNTFRVFGSLSVEW	HHHHHHHHCCEEEEE	c1b-5	boundary	boundary\|CEBP1_N; boundary\|RRM1_CPEB1; boundary\|RRM_7;	0.14	NA
10	nes_diso	Q9BZB8	364	LVFELEKSVRSLLQ	EEECCHHHHHHHHH	c3-4	boundary	middle\|RRM1_CPEB1; middle\|RRM_7;	0.0	Weak: -32.92	Weak\|
11	nes_ord	Q9BZB8	484	YLKAVSAAFVEIKT	HHHHHHHHCCEEEC	c3-4	ORD	boundary\|RRM2_CPEB1; boundary\|CEBP_ZZ;	0.0	Bad: -28.865

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.