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Q9UQL6_HDAC5 | Histone deacetylase 5   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Reference DB: NESdb:61 validNES:P069
  • PMIDs: 11081517;11509672
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): V1086A, L1091A/L1092A, L1092A
  • Mutation(bind): Unknown
  • Functional seq: 1081EEAETVSAMALLSVGAEQAQAAAAREHSPRPAEEPMEQEPAL1122
  • Sites: 1081-1122


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q9UQL6 19 ILPRTSLHSIPVTV CCCCCCCCCCCCEE c2-AT-5 DISO 0.0 NA
2 nes_diso Q9UQL6 179 ASTEVKLRLQEFLLSK CCHHHHHHHHHHHHCC c1a-4 DISO boundary|HDAC4_Gln; boundary|ClassIIa_HDAC5_Gln-rich-N; 0.0 Weak: -30.852 Weak|
3 nes_diso Q9UQL6 181 TEVKLRLQEFLLSK HHHHHHHHHHHHCC c2-4 DISO boundary|HDAC4_Gln; boundary|ClassIIa_HDAC5_Gln-rich-N; 0.0 Bad: -28.487
4 nes_diso Q9UQL6 368 SLPNISLGLQATVTVTN CCCCCCCCCCCCCCCCC c1c-5 DISO 0.0 Medium: -33.604 Medium|
5 nes_diso Q9UQL6 419 STSSIPGCLLGVALEG CCCCCCCCCCCCCCCC c1a-4 DISO 0.0 Medium: -35.103 Medium|
6 nes_diso Q9UQL6 678 KHLFTTGVVYDTFMLKH CCCCCEEEECCHHHHHC c1c-AT-4 boundary boundary|HDAC5; 0.5 NA
7 nes_diso Q9UQL6 767 LLGPISQKMYAVLP CCCCHHHHHHHHCC c3-4 boundary middle|HDAC5; 0.0 Weak: -30.747 Weak|
8 nes_diso Q9UQL6 797 SSSAVRMAVGCLLELAF HHHHHHHHHHHHHHHHH c1c-4 boundary middle|HDAC5; 0.0 Bad: -28.471
9 nes_diso Q9UQL6 801 VRMAVGCLLELAFKVAA HHHHHHHHHHHHHHHHC c1c-4 boundary middle|HDAC5; 0.0 Medium: -35.048 Medium|
10 nes_ord Q9UQL6 812 AFKVAAGELKNGFAIIR HHHHHCCCCCCEEEEEC c1c-AT-5 ORD middle|HDAC5; 0.12 NA
11 nes_ord Q9UQL6 836 ESTAMGFCFFNSVAITA CCCCCEEHHHHHHHHHH c1c-4 ORD middle|HDAC5; 0.25 Strong: -40.744
12 nes_ord Q9UQL6 847 SVAITAKLLQQKLNVGK HHHHHHHHHHHHHCCCE c1c-AT-5 ORD middle|HDAC5; 0.0 NA
13 nes_ord Q9UQL6 855 LQQKLNVGKVLIVD HHHHHCCCEEEEEE c2-4 ORD middle|HDAC5; 0.29 Bad: -27.835
14 nes_ord Q9UQL6 934 DVEYLTAFRTVVMPI CHHHHHHHHHCHHHH c1b-5 ORD middle|HDAC5; 0.0 Medium: -38.674
15 nes_ord Q9UQL6 955 DVVLVSAGFDAVEG CEEEEECCCCHHCC c3-4 ORD middle|HDAC5; 0.43 Medium: -35.356
16 nes_ord Q9UQL6 982 CFGHLTRQLMTLAG HHHHHHHHHHHHHC c3-4 ORD middle|HDAC5; 0.0 Medium: -37.664
17 nes_diso Q9UQL6 1015 SEACVSALLSVELQP HHHHHHHHCCCCCCC c1b-4 boundary middle|HDAC5; 0.0 Bad: -26.435
18 nes_diso Q9UQL6 1039 PNINAVATLEKVIEIQS CCHHHHHHHHHHHHHHH c1c-AT-4 __ middle|HDAC5; 0.0 NA
19 nes_diso Q9UQL6 1040 NINAVATLEKVIEIQS CHHHHHHHHHHHHHHH c1d-5 __ middle|HDAC5; 0.0 NA
20 ExpNES_diso Q9UQL6 1081 EEAETVSAMALLSVGA
.....*....**....		 CHHHHHHHHHHCCCCH c1a-AT-4 DISO boundary|HDAC5; 0.0 NA
21 ExpNES_diso Q9UQL6 1082 EAETVSAMALLSVGA
....*....**....		 HHHHHHHHHHCCCCH c1b-4 DISO boundary|HDAC5; 0.0 Medium: -39.505 Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.