Homologous cluster 'Class I glutamine amidotransferase-like' representative domains
Cluster description:
This cluster (2007.1.19) includes RLM-containing Class I glutamine amidotransferase-like domains with different catalytic triads (PMID: 20630867, PMID: 11106384), FabD/lysophospholipase-like domains, with GGG motif and Ser/Asp catalytic dyad (PMID: 16814865), CheY-like domains (PMID: 16740923), Phosphofructokinase N-terminal domains with conserved sequence motifs NxKS, GGDG and LPLGTxND (PMID: 17351295), chelatase-like domains (PMID: 12761666), periplasmic binding-like domains (PMID: 8638105), ATC_likr domains (PMID: 10331867)
| ECOD repr domain ID | Domain range | ECOD T-group | ECOD F-group ID | Protein name | Homology sign logo | Pfam seed alignment depth | Pfam | Comments |
|---|---|---|---|---|---|---|---|---|
| e1u9cA1 | A:1-221 | Class I glutamine amidotransferase-like | 2007.1.1.1 | APC35852 | GG; catalytic triad: D-C-T | 24 | PF01965 | PMID: 20630867 |
| e1fyeA1 | A:1-229 | Class I glutamine amidotransferase-like | 2007.1.1.12 | Aspartyl Dipeptidase | GG; catalytic triad: S-H-E | 21 | PF03575 | PMID: 11106384 |
| e1t0bA1 | A:3-242 | Class I glutamine amidotransferase-like | 2007.1.1.15 | ThuA-like protein | GG | 197 | PF06283 | |
| e4aueB8 | B:542-698 | Class I glutamine amidotransferase-like | 2007.1.1.17 | Catalase-phenol oxidase | n/a | 29 | PF18011 | |
| e1zl0A1 | A:3-169 | Class I glutamine amidotransferase-like | 2007.1.1.19 | Murein tetrapeptide carboxypeptidase | GG; catalytic triad: S-H-E | 275 | PF02016 | PMID: 24123814 |
| e5fmsA1 | A:7-248 | Class I glutamine amidotransferase-like | 2007.1.1.20 | Intraflagellar transport protein 52 | n/a | 127 | PF09822 | |
| e2gk3A1 | A:8-253 | Class I glutamine amidotransferase-like | 2007.1.1.3 | Cytoplasmic Protein STM3548 | n/a | 5 | PF07090 | PMID: 17968677 |
| e2zuuB1 | B:437-690 | Class I glutamine amidotransferase-like | 2007.1.1.34 | Galacto-N-biose/Lacto-N-biose I phosphorylase | GG | 30 | PF17385 | |
| e1tugA1 | A:1-150 | Class I glutamine amidotransferase-like | 2007.1.1.36 | Aspartate Transcarbamoylase | n/a | 1326 | PF02729 | PMID: 15288791 |
| e5swvC5 | C:1292-1394 | Class I glutamine amidotransferase-like | 2007.1.1.37 | Pentafunctional AROM polypeptide | n/a | 37 | PF08501 | |
| e4j4bA2 | A:1-121 | Class I glutamine amidotransferase-like | 2007.1.1.39 | Pyrrolysine Synthase | n/a | n/a | n/a | |
| e4i66A1 | A:32-234 | Class I glutamine amidotransferase-like | 2007.1.1.5 | Hoch_4089 protein | GG | 115 | PF13709 | |
| e1vcoA2 | A:298-547 | Class I glutamine amidotransferase-like | 2007.1.1.6 | CTP synthetase | GG; catalytic triad: C-H-E | 96 | PF00117 | PMID: 15296735 |
| e1t3tA7 | A:1034-1295 | Class I glutamine amidotransferase-like | 2007.1.1.7 | Formylglycinamide Ribonucleotide Amidotransferase | GG; catalytic triad: C-H-E | 156 | PF13507 | PMID: 15301531 |
| e1kwgA3 | A:394-590 | Class I glutamine amidotransferase-like | 2007.1.1.8 | beta-Galactosidase | n/a | 18 | PF08532 | PMID: 12215416 |
| e2ghrA1 | A:17-297 | Class I glutamine amidotransferase-like | 2007.1.1.9 | Homoserine O-succinyltransferase | catalytic triad: C-H-E | 55 | PF04204 | PMID: 17546672 |
| e2pjuA1 | A:11-101 | PrpR receptor domain-like | 2007.1.10.1 | Propionate catabolism operon regulatory protein | n/a | 84 | PF06506 | |
| e2ajtA2 | A:1-175 | L-fucose isomerase, N-terminal and second domains | 2007.1.11.1 | L-Arabinose Isomerase | HG | 132 | PF02610 | PMID: 16756997 |
| e4c20B1 | B:2-172 | L-fucose isomerase, N-terminal and second domains | 2007.1.11.2 | L-Fucose Isomerase | n/a | 44 | PF07881 | PMID: 24333485 |
| e4c20B2 | B:173-353 | L-fucose isomerase, N-terminal and second domains | 2007.1.11.3 | L-Fucose Isomerase | n/a | 48 | PF07882 | |
| e2c4vA1 | A:1-158 | Type II 3-dehydroquinate dehydratase | 2007.1.12.1 | Type II Dehydroquinase | HxS/TN | 656 | PF01220 | PMID: 16480265 |
| e1di0A1 | A:11-155 | Lumazine synthase | 2007.1.13.1 | Lumazine synthase | n/a | 642 | PF00885 | |
| e1qgoA1 | A:2-114 | Chelatase-like | 2007.1.14.1 | Sirohydrochlorin cobaltochelatase | n/a | 8 | PF06180 | |
| e1m1nB1 | B:2-213 | Chelatase-like | 2007.1.14.18 | Nitrogenase MoFe | n/a | 67 | PF00148 | |
| e3aekA3 | A:167-277 | Chelatase-like | 2007.1.14.19 | Light-independent protochlorophyllide reductase | n/a | 67 | PF00148 | |
| e1tjnA1 | A:1-125 | Chelatase-like | 2007.1.14.2 | Sirohydrochlorin cobaltochelatase | n/a | 62 | PF01903 | |
| e6r5sA1 | A:187-322 | Chelatase-like | 2007.1.14.21 | Adhesion protein | n/a | 954 | PF01297 | |
| e2hk6A1 | A:2-148 | Chelatase-like | 2007.1.14.4 | Ferrochelatase | n/a | 149 | PF00762 | |
| e3o3mA1 | A:5-187 | Chelatase-like | 2007.1.14.5 | 2-Hydroxyisocaproyl-CoA Dehydratase | n/a | 340 | PF06050 | |
| e2ynmD2 | D:1-148 | Chelatase-like | 2007.1.14.6 | Protochlorophyllide Oxidoreductase | n/a | 67 | PF00148 | |
| e4pm4A2 | A:162-304 | Chelatase-like | 2007.1.14.7 | Iron complex transporter substrate-binding protein | n/a | 24 | PF01497 | |
| e1toaA1 | A:32-174 | Chelatase-like | 2007.1.14.8 | Periplasmic zinc-binding protein TroA | n/a | 954 | PF01297 | |
| e2chuA1 | A:24-171 | Chelatase-like | 2007.1.14.9 | Ferric Enterobactin Binding Protein | n/a | 24 | PF01497 | |
| e4yn7A1 | A:38-190 | YfiR | 2007.1.15.1 | YfiR | n/a | 125 | PF13689 | PMID: 25849887 |
| e3lzcA3 | A:211-342 | Iron-sulphur enzyme Dph2 | 2007.1.16.1 | 2-(3-amino-3-carboxypropyl)histidine synthase | n/a | 214 | PF01866 | PMID: 20559380 |
| e3lzcA2 | A:97-210 | Iron-sulphur enzyme Dph2 | 2007.1.16.2 | 2-(3-amino-3-carboxypropyl)histidine synthase | n/a | 214 | PF01866 | |
| e3lzcA1 | A:1-96 | Iron-sulphur enzyme Dph2 | 2007.1.16.3 | 2-(3-amino-3-carboxypropyl)histidine synthase | n/a | 214 | PF01866 | |
| e3wrwB2 | B:209-430 | Resistance protein Tm-1 second domain | 2007.1.17.1 | ToMV resistance protein Tm-1 | n/a | 128 | PF06792 | PMID: 25092327 |
| e1u6kA1 | A:2-283 | F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) | 2007.1.18.1 | f420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) | n/a | 20 | PF01993 | PMID: 15681872 |
| e1cjyA2 | A:142-432,A:460-498,A:539-721 | FabD/lysophospholipase-like | 2007.1.19.1 | Cytosolic phospholipase A2 | GGG; S; D | 14 | PF01735 | |
| e1oxwA1 | A:25-384 | FabD/lysophospholipase-like | 2007.1.19.2 | Patatin | GGG; GxS | 108 | PF01734 | |
| e1nm2A2 | A:0-133,A:196-314 | FabD/lysophospholipase-like | 2007.1.19.3 | Malonyl CoA:acyl carrier protein malonyltransferase | GxG; GxS | 8 | PF00698 | |
| e6iytA3 | A:83-202,A:286-434 | FabD/lysophospholipase-like | 2007.1.19.4 | Type I modular polyketide synthase | GxG; GxS | 8 | PF00698 | |
| e3im9A2 | A:-7-125,A:197-305 | FabD/lysophospholipase-like | 2007.1.19.5 | Malonyl CoA-acyl carrier protein transacylase | GxG; S | 8 | PF00698 | |
| e4oqjA4 | A:541-705 | FabD/lysophospholipase-like | 2007.1.19.6 | Oxazolomycin ketosynthase | GxG; S | 8 | PF00698 | |
| e4pe5B1 | B:30-147,B:286-394 | Periplasmic binding protein-like I | 2007.1.2.12 | Glutamate receptor ionotropic, NMDA 2B | n/a | 71 | PF01094 | PMID: 1583688 |
| e1jx6A3 | A:27-178,A:312-364 | Periplasmic binding protein-like I | 2007.1.2.13 | Autoinducer 2-binding periplasmic protein LuxP | n/a | 168 | PF13407 | |
| e4xxhA1 | A:61-158,A:283-315 | Periplasmic binding protein-like I | 2007.1.2.14 | HTH-type transcriptional regulator TreR | n/a | 74 | PF13377 | |
| e4fe4A1 | A:102-237 | Periplasmic binding protein-like I | 2007.1.2.16 | Xylose operon regulatory protein | n/a | 74 | PF13377 | |
| e4pe5B2 | B:148-285 | Periplasmic binding protein-like I | 2007.1.2.18 | Glutamate receptor ionotropic, NMDA 2B | n/a | 71 | PF01094 | |
| e3h5vA2 | A:118-378 | Periplasmic binding protein-like I | 2007.1.2.25 | Glutamate receptor 2 | n/a | 71 | PF01094 | |
| e3lftA1 | A:49-164,A:283-343 | Periplasmic binding protein-like I | 2007.1.2.26 | uncharacterized protein | n/a | 6 | PF04392 | |
| e3lftA2 | A:165-282 | Periplasmic binding protein-like I | 2007.1.2.27 | uncharacterized protein | n/a | 6 | PF04392 | |
| e4u1wB2 | B:9-112,B:245-383 | Periplasmic binding protein-like I | 2007.1.2.28 | Glutamate receptor 2 | n/a | 71 | PF01094 | |
| e1ewkA2 | A:205-343 | Periplasmic binding protein-like I | 2007.1.2.29 | Metabotropic glutamate receptor 1 | n/a | 71 | PF01094 | |
| e4iilA1 | A:9-119,A:253-322 | Periplasmic binding protein-like I | 2007.1.2.30 | ABC transporter riboflavin-binding protein RfuA | n/a | 11 | PF02608 | PMID: 23404400 |
| e4iilA2 | A:120-252 | Periplasmic binding protein-like I | 2007.1.2.31 | ABC transporter riboflavin-binding protein RfuA | n/a | 11 | PF02608 | |
| e3qi7A2 | A:163-326 | Periplasmic binding protein-like I | 2007.1.2.32 | Putative transcriptional regulator | n/a | 29 | PF12683 | |
| e3qi7A1 | A:33-162,A:327-395 | Periplasmic binding protein-like I | 2007.1.2.33 | Putative transcriptional regulator | n/a | 29 | PF12683 | |
| e3ckmA2 | A:257-360,A:489-573 | Periplasmic binding protein-like I | 2007.1.2.34 | Penicillin-binding protein activator LpoA | n/a | 6 | PF04348 | |
| e3ckmA3 | A:361-488 | Periplasmic binding protein-like I | 2007.1.2.35 | Penicillin-binding protein activator LpoA | n/a | 6 | PF04348 | |
| e2driA2 | A:1-103,A:236-271 | Periplasmic binding protein-like I | 2007.1.2.36 | Ribose-binding protein | n/a | 168 | PF13407 | |
| e8abpA1 | A:110-254 | Periplasmic binding protein-like I | 2007.1.2.37 | Arabinose-binding protein | n/a | 6 | PF00532 | |
| e4fe7A6 | A:1-101 | Periplasmic binding protein-like I | 2007.1.2.38 | Xylose operon regulatory protein | n/a | 29 | PF12683 | |
| e2nzuG3 | G:58-159,G:293-332 | Periplasmic binding protein-like I | 2007.1.2.39 | Catabolite control protein A | n/a | 74 | PF13377 | |
| e1tjyA2 | A:131-266 | Periplasmic binding protein-like I | 2007.1.2.40 | Autoinducer 2-binding protein LsrB | n/a | 168 | PF13407 | |
| e1tjyA3 | A:25-130,A:267-340 | Periplasmic binding protein-like I | 2007.1.2.41 | Autoinducer 2-binding protein LsrB | n/a | 168 | PF13407 | |
| e1usgA3 | A:120-249 | Periplasmic binding protein-like I | 2007.1.2.42 | Leucine-specific-binding protein | n/a | 152 | PF13458 | |
| e1usgA2 | A:1-119,A:250-345 | Periplasmic binding protein-like I | 2007.1.2.43 | Leucine-specific-binding protein | n/a | 152 | PF13458 | |
| e5jx2A2 | A:236-263,A:284-378 | Periplasmic binding protein-like I | 2007.1.2.44 | Glucose/galactose-binding lipoprotein | n/a | 5 | PF18610 | |
| e5ym0A2 | A:39-201,A:246-427 | Dehydratase-like | 2007.1.20.2 | Dihydroxy-acid dehydratase | n/a | 834 | PF00920 | |
| e1xrsB2 | B:102-261 | CheY-like | 2007.1.3.1 | Lysine 5,6-Aminomutase | GG | 89 | PF02310 | PMID: 15514022 |
| e4jc0A4 | A:2-113 | CheY-like | 2007.1.3.10 | Ribosomal protein S12 methylthiotransferase RimO | n/a | 115 | PF00919 | PMID: 16740923 |
| e3klnD1 | D:4-152 | CheY-like | 2007.1.3.11 | Transcriptional regulator, LuxR family | n/a | 1 | PF16968 | |
| e3q7rA1 | A:2-111 | CheY-like | 2007.1.3.12 | Transcriptional regulatory protein | n/a | 1 | PF16968 | |
| e4o1hA1 | A:-1-117 | CheY-like | 2007.1.3.13 | Transcription regulator GlnR | n/a | 1 | PF16968 | |
| e3fkqA2 | A:1-114 | CheY-like | 2007.1.3.14 | TadZ protein | n/a | 1 | PF16968 | |
| e4wxmB1 | B:1-129 | CheY-like | 2007.1.3.2 | Transcriptional regulator FleQ | n/a | 45 | PF06490 | |
| e1u0sY1 | Y:2-119 | CheY-like | 2007.1.3.29 | Chemotaxis protein cheA | n/a | 52 | PF00072 | PMID: 15289606 |
| e1c4kA3 | A:1-107 | CheY-like | 2007.1.3.3 | Inducible ornithine decarboxylase | n/a | 77 | PF03709 | |
| e1ublS3 | S:1-184 | CheY-like | 2007.1.3.30 | Periplasmic [NiFe] hydrogenase | n/a | 164 | PF01058 | PMID: 12296727 |
| e2ayxA2 | A:700-816 | CheY-like | 2007.1.3.4 | Sensor kinase protein rcsC | n/a | 18 | PF09456 | |
| e7reqB2 | B:476-638 | CheY-like | 2007.1.3.6 | Methylmalonyl-CoA mutase | n/a | 289 | PF01642 | |
| e1qo0D3 | D:2-134 | CheY-like | 2007.1.3.7 | Aliphatic amidase expression-regulating protein | n/a | 1 | PF16968 | |
| e1y7pA2 | A:79-217 | CheY-like | 2007.1.3.8 | Hypothetical protein AF1403 | n/a | 18 | PF18462 | |
| e1r8jA2 | A:1-135 | CheY-like | 2007.1.3.9 | Circadian clock protein KaiA | n/a | 1 | PF16968 | |
| e2bonA2 | A:5-119 | Phosphofructokinase N-terminal domain | 2007.1.4.1 | Diacylglycerol Kinase | NxKS; GGDG; LPLGTxND | 106 | PF00781 | PMID: 17351295 |
| e1u0tA2 | A:5-40,A:76-133 | Phosphofructokinase N-terminal domain | 2007.1.4.2 | Polyphosphate/ATP-NAD kinase | GGDG; LPLGTxND | 17 | PF01513 | |
| e2f48A2 | A:4-219,A:436-553 | Phosphofructokinase N-terminal domain | 2007.1.4.5 | Pyrophosphate--fructose 6-phosphate 1-phosphotransferase | GGDG; LPLGTxND | 743 | PF00365 | |
| e4xz2B3 | B:408-550,B:678-762 | Phosphofructokinase N-terminal domain | 2007.1.4.8 | Phosphofructokinase | GGDG; LPLGTxND | 743 | PF00365 | |
| e1b74A2 | A:106-252 | ATC-like | 2007.1.5.18 | Glutamate racemase | n/a | 108 | PF01177 | PMID: 10331867 |
| e1b74A1 | A:1-105 | ATC-like | 2007.1.5.19 | Glutamate racemase | n/a | 108 | PF01177 | |
| e3kwlA3 | A:205-366 | ATC-like | 2007.1.5.2 | Uncharacterized protein | n/a | n/a | n/a | |
| e3eisD2 | D:4-116 | ATC-like | 2007.1.5.20 | Arylmalonate Decarboxylase | n/a | 29 | PF07302 | |
| e3kwlA4 | A:367-495 | ATC-like | 2007.1.5.21 | Uncharacterized protein | n/a | n/a | n/a | |
| e4ix1A2 | A:7-127 | ATC-like | 2007.1.5.5 | Hypothetical protein OPAG_01669 | n/a | 12 | PF17645 | |
| e2dgdA2 | A:2-107 | ATC-like | 2007.1.5.6 | ST0656 | n/a | 12 | PF17645 | |
| e1vl6A2 | A:1-154 | Aminoacid dehydrogenase-like, N-terminal domain | 2007.1.6.1 | Malate oxidoreductase | GxGxxG | 48 | PF00390 | PMID: 12033925 |
| e1luaA2 | A:2-97 | Aminoacid dehydrogenase-like, N-terminal domain | 2007.1.6.2 | Methylene-tetrahydromethanopterin dehydrogenase | n/a | 38 | PF09176 | |
| e1vi2A2 | A:5-106 | Aminoacid dehydrogenase-like, N-terminal domain | 2007.1.6.3 | Shikimate-5-dehydrogenase | n/a | 37 | PF08501 | |
| e1a4iA2 | A:2-126 | Aminoacid dehydrogenase-like, N-terminal domain | 2007.1.6.4 | Dehydrogenase/cyclohydrolase | n/a | 1211 | PF00763 | PMID: 9519408 |
| e1c1dA2 | A:1-148 | Aminoacid dehydrogenase-like, N-terminal domain | 2007.1.6.7 | L-phenylalanine dehydrogenase | n/a | 360 | PF02812 | |
| e1sg6A2 | A:4-183 | Rossmann-like domain in dehydroquinate synthase-like enzymes | 2007.1.7.2 | 3-dehydroquinate synthase | GGG | 77 | PF01761 | PMID: 15103156 |
| e1rrmA2 | A:2-185 | Rossmann-like domain in dehydroquinate synthase-like enzymes | 2007.1.7.5 | Lactaldehyde reductase | GGG | 219 | PF00465 | |
| e1wd7A1 | A:8-43,A:165-261 | Uroporphyrinogen III synthase (U3S, HemD) | 2007.1.8.2 | Uroporphyrinogen III Synthase | n/a | 76 | PF02602 | PMID: 11689424 |
| e3mw8A2 | A:2-34,A:152-238 | Uroporphyrinogen III synthase (U3S, HemD) | 2007.1.8.3 | Uroporphyrinogen III Synthase | n/a | 76 | PF02602 | |
| e3rg8A1 | A:2-156 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) | 2007.1.9.1 | Phosphoribosylaminoimidazole carboxylase | n/a | 633 | PF00731 | PMID: 21548610 |