Homologous cluster 'Class I glutamine amidotransferase-like' representative domains

Cluster description:

This cluster (2007.1.19) includes RLM-containing Class I glutamine amidotransferase-like domains with different catalytic triads (PMID: 20630867, PMID: 11106384), FabD/lysophospholipase-like domains, with GGG motif and Ser/Asp catalytic dyad (PMID: 16814865), CheY-like domains (PMID: 16740923), Phosphofructokinase N-terminal domains with conserved sequence motifs NxKS, GGDG and LPLGTxND (PMID: 17351295), chelatase-like domains (PMID: 12761666), periplasmic binding-like domains (PMID: 8638105), ATC_likr domains (PMID: 10331867)

ECOD repr domain ID Domain range ECOD T-group ECOD F-group ID Protein name Homology sign logo Pfam seed alignment depth Pfam Comments
e1u9cA1 A:1-221 Class I glutamine amidotransferase-like 2007.1.1.1 APC35852 GG; catalytic triad: D-C-T 24 PF01965 PMID: 20630867
e1fyeA1 A:1-229 Class I glutamine amidotransferase-like 2007.1.1.12 Aspartyl Dipeptidase GG; catalytic triad: S-H-E 21 PF03575 PMID: 11106384
e1t0bA1 A:3-242 Class I glutamine amidotransferase-like 2007.1.1.15 ThuA-like protein GG 197 PF06283
e4aueB8 B:542-698 Class I glutamine amidotransferase-like 2007.1.1.17 Catalase-phenol oxidase n/a 29 PF18011
e1zl0A1 A:3-169 Class I glutamine amidotransferase-like 2007.1.1.19 Murein tetrapeptide carboxypeptidase GG; catalytic triad: S-H-E 275 PF02016 PMID: 24123814
e5fmsA1 A:7-248 Class I glutamine amidotransferase-like 2007.1.1.20 Intraflagellar transport protein 52 n/a 127 PF09822
e2gk3A1 A:8-253 Class I glutamine amidotransferase-like 2007.1.1.3 Cytoplasmic Protein STM3548 n/a 5 PF07090 PMID: 17968677
e2zuuB1 B:437-690 Class I glutamine amidotransferase-like 2007.1.1.34 Galacto-N-biose/Lacto-N-biose I phosphorylase GG 30 PF17385
e1tugA1 A:1-150 Class I glutamine amidotransferase-like 2007.1.1.36 Aspartate Transcarbamoylase n/a 1326 PF02729 PMID: 15288791
e5swvC5 C:1292-1394 Class I glutamine amidotransferase-like 2007.1.1.37 Pentafunctional AROM polypeptide n/a 37 PF08501
e4j4bA2 A:1-121 Class I glutamine amidotransferase-like 2007.1.1.39 Pyrrolysine Synthase n/a n/a n/a
e4i66A1 A:32-234 Class I glutamine amidotransferase-like 2007.1.1.5 Hoch_4089 protein GG 115 PF13709
e1vcoA2 A:298-547 Class I glutamine amidotransferase-like 2007.1.1.6 CTP synthetase GG; catalytic triad: C-H-E 96 PF00117 PMID: 15296735
e1t3tA7 A:1034-1295 Class I glutamine amidotransferase-like 2007.1.1.7 Formylglycinamide Ribonucleotide Amidotransferase GG; catalytic triad: C-H-E 156 PF13507 PMID: 15301531
e1kwgA3 A:394-590 Class I glutamine amidotransferase-like 2007.1.1.8 beta-Galactosidase n/a 18 PF08532 PMID: 12215416
e2ghrA1 A:17-297 Class I glutamine amidotransferase-like 2007.1.1.9 Homoserine O-succinyltransferase catalytic triad: C-H-E 55 PF04204 PMID: 17546672
e2pjuA1 A:11-101 PrpR receptor domain-like 2007.1.10.1 Propionate catabolism operon regulatory protein n/a 84 PF06506
e2ajtA2 A:1-175 L-fucose isomerase, N-terminal and second domains 2007.1.11.1 L-Arabinose Isomerase HG 132 PF02610 PMID: 16756997
e4c20B1 B:2-172 L-fucose isomerase, N-terminal and second domains 2007.1.11.2 L-Fucose Isomerase n/a 44 PF07881 PMID: 24333485
e4c20B2 B:173-353 L-fucose isomerase, N-terminal and second domains 2007.1.11.3 L-Fucose Isomerase n/a 48 PF07882
e2c4vA1 A:1-158 Type II 3-dehydroquinate dehydratase 2007.1.12.1 Type II Dehydroquinase HxS/TN 656 PF01220 PMID: 16480265
e1di0A1 A:11-155 Lumazine synthase 2007.1.13.1 Lumazine synthase n/a 642 PF00885
e1qgoA1 A:2-114 Chelatase-like 2007.1.14.1 Sirohydrochlorin cobaltochelatase n/a 8 PF06180
e1m1nB1 B:2-213 Chelatase-like 2007.1.14.18 Nitrogenase MoFe n/a 67 PF00148
e3aekA3 A:167-277 Chelatase-like 2007.1.14.19 Light-independent protochlorophyllide reductase n/a 67 PF00148
e1tjnA1 A:1-125 Chelatase-like 2007.1.14.2 Sirohydrochlorin cobaltochelatase n/a 62 PF01903
e6r5sA1 A:187-322 Chelatase-like 2007.1.14.21 Adhesion protein n/a 954 PF01297
e2hk6A1 A:2-148 Chelatase-like 2007.1.14.4 Ferrochelatase n/a 149 PF00762
e3o3mA1 A:5-187 Chelatase-like 2007.1.14.5 2-Hydroxyisocaproyl-CoA Dehydratase n/a 340 PF06050
e2ynmD2 D:1-148 Chelatase-like 2007.1.14.6 Protochlorophyllide Oxidoreductase n/a 67 PF00148
e4pm4A2 A:162-304 Chelatase-like 2007.1.14.7 Iron complex transporter substrate-binding protein n/a 24 PF01497
e1toaA1 A:32-174 Chelatase-like 2007.1.14.8 Periplasmic zinc-binding protein TroA n/a 954 PF01297
e2chuA1 A:24-171 Chelatase-like 2007.1.14.9 Ferric Enterobactin Binding Protein n/a 24 PF01497
e4yn7A1 A:38-190 YfiR 2007.1.15.1 YfiR n/a 125 PF13689 PMID: 25849887
e3lzcA3 A:211-342 Iron-sulphur enzyme Dph2 2007.1.16.1 2-(3-amino-3-carboxypropyl)histidine synthase n/a 214 PF01866 PMID: 20559380
e3lzcA2 A:97-210 Iron-sulphur enzyme Dph2 2007.1.16.2 2-(3-amino-3-carboxypropyl)histidine synthase n/a 214 PF01866
e3lzcA1 A:1-96 Iron-sulphur enzyme Dph2 2007.1.16.3 2-(3-amino-3-carboxypropyl)histidine synthase n/a 214 PF01866
e3wrwB2 B:209-430 Resistance protein Tm-1 second domain 2007.1.17.1 ToMV resistance protein Tm-1 n/a 128 PF06792 PMID: 25092327
e1u6kA1 A:2-283 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 2007.1.18.1 f420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) n/a 20 PF01993 PMID: 15681872
e1cjyA2 A:142-432,A:460-498,A:539-721 FabD/lysophospholipase-like 2007.1.19.1 Cytosolic phospholipase A2 GGG; S; D 14 PF01735
e1oxwA1 A:25-384 FabD/lysophospholipase-like 2007.1.19.2 Patatin GGG; GxS 108 PF01734
e1nm2A2 A:0-133,A:196-314 FabD/lysophospholipase-like 2007.1.19.3 Malonyl CoA:acyl carrier protein malonyltransferase GxG; GxS 8 PF00698
e6iytA3 A:83-202,A:286-434 FabD/lysophospholipase-like 2007.1.19.4 Type I modular polyketide synthase GxG; GxS 8 PF00698
e3im9A2 A:-7-125,A:197-305 FabD/lysophospholipase-like 2007.1.19.5 Malonyl CoA-acyl carrier protein transacylase GxG; S 8 PF00698
e4oqjA4 A:541-705 FabD/lysophospholipase-like 2007.1.19.6 Oxazolomycin ketosynthase GxG; S 8 PF00698
e4pe5B1 B:30-147,B:286-394 Periplasmic binding protein-like I 2007.1.2.12 Glutamate receptor ionotropic, NMDA 2B n/a 71 PF01094 PMID: 1583688
e1jx6A3 A:27-178,A:312-364 Periplasmic binding protein-like I 2007.1.2.13 Autoinducer 2-binding periplasmic protein LuxP n/a 168 PF13407
e4xxhA1 A:61-158,A:283-315 Periplasmic binding protein-like I 2007.1.2.14 HTH-type transcriptional regulator TreR n/a 74 PF13377
e4fe4A1 A:102-237 Periplasmic binding protein-like I 2007.1.2.16 Xylose operon regulatory protein n/a 74 PF13377
e4pe5B2 B:148-285 Periplasmic binding protein-like I 2007.1.2.18 Glutamate receptor ionotropic, NMDA 2B n/a 71 PF01094
e3h5vA2 A:118-378 Periplasmic binding protein-like I 2007.1.2.25 Glutamate receptor 2 n/a 71 PF01094
e3lftA1 A:49-164,A:283-343 Periplasmic binding protein-like I 2007.1.2.26 uncharacterized protein n/a 6 PF04392
e3lftA2 A:165-282 Periplasmic binding protein-like I 2007.1.2.27 uncharacterized protein n/a 6 PF04392
e4u1wB2 B:9-112,B:245-383 Periplasmic binding protein-like I 2007.1.2.28 Glutamate receptor 2 n/a 71 PF01094
e1ewkA2 A:205-343 Periplasmic binding protein-like I 2007.1.2.29 Metabotropic glutamate receptor 1 n/a 71 PF01094
e4iilA1 A:9-119,A:253-322 Periplasmic binding protein-like I 2007.1.2.30 ABC transporter riboflavin-binding protein RfuA n/a 11 PF02608 PMID: 23404400
e4iilA2 A:120-252 Periplasmic binding protein-like I 2007.1.2.31 ABC transporter riboflavin-binding protein RfuA n/a 11 PF02608
e3qi7A2 A:163-326 Periplasmic binding protein-like I 2007.1.2.32 Putative transcriptional regulator n/a 29 PF12683
e3qi7A1 A:33-162,A:327-395 Periplasmic binding protein-like I 2007.1.2.33 Putative transcriptional regulator n/a 29 PF12683
e3ckmA2 A:257-360,A:489-573 Periplasmic binding protein-like I 2007.1.2.34 Penicillin-binding protein activator LpoA n/a 6 PF04348
e3ckmA3 A:361-488 Periplasmic binding protein-like I 2007.1.2.35 Penicillin-binding protein activator LpoA n/a 6 PF04348
e2driA2 A:1-103,A:236-271 Periplasmic binding protein-like I 2007.1.2.36 Ribose-binding protein n/a 168 PF13407
e8abpA1 A:110-254 Periplasmic binding protein-like I 2007.1.2.37 Arabinose-binding protein n/a 6 PF00532
e4fe7A6 A:1-101 Periplasmic binding protein-like I 2007.1.2.38 Xylose operon regulatory protein n/a 29 PF12683
e2nzuG3 G:58-159,G:293-332 Periplasmic binding protein-like I 2007.1.2.39 Catabolite control protein A n/a 74 PF13377
e1tjyA2 A:131-266 Periplasmic binding protein-like I 2007.1.2.40 Autoinducer 2-binding protein LsrB n/a 168 PF13407
e1tjyA3 A:25-130,A:267-340 Periplasmic binding protein-like I 2007.1.2.41 Autoinducer 2-binding protein LsrB n/a 168 PF13407
e1usgA3 A:120-249 Periplasmic binding protein-like I 2007.1.2.42 Leucine-specific-binding protein n/a 152 PF13458
e1usgA2 A:1-119,A:250-345 Periplasmic binding protein-like I 2007.1.2.43 Leucine-specific-binding protein n/a 152 PF13458
e5jx2A2 A:236-263,A:284-378 Periplasmic binding protein-like I 2007.1.2.44 Glucose/galactose-binding lipoprotein n/a 5 PF18610
e5ym0A2 A:39-201,A:246-427 Dehydratase-like 2007.1.20.2 Dihydroxy-acid dehydratase n/a 834 PF00920
e1xrsB2 B:102-261 CheY-like 2007.1.3.1 Lysine 5,6-Aminomutase GG 89 PF02310 PMID: 15514022
e4jc0A4 A:2-113 CheY-like 2007.1.3.10 Ribosomal protein S12 methylthiotransferase RimO n/a 115 PF00919 PMID: 16740923
e3klnD1 D:4-152 CheY-like 2007.1.3.11 Transcriptional regulator, LuxR family n/a 1 PF16968
e3q7rA1 A:2-111 CheY-like 2007.1.3.12 Transcriptional regulatory protein n/a 1 PF16968
e4o1hA1 A:-1-117 CheY-like 2007.1.3.13 Transcription regulator GlnR n/a 1 PF16968
e3fkqA2 A:1-114 CheY-like 2007.1.3.14 TadZ protein n/a 1 PF16968
e4wxmB1 B:1-129 CheY-like 2007.1.3.2 Transcriptional regulator FleQ n/a 45 PF06490
e1u0sY1 Y:2-119 CheY-like 2007.1.3.29 Chemotaxis protein cheA n/a 52 PF00072 PMID: 15289606
e1c4kA3 A:1-107 CheY-like 2007.1.3.3 Inducible ornithine decarboxylase n/a 77 PF03709
e1ublS3 S:1-184 CheY-like 2007.1.3.30 Periplasmic [NiFe] hydrogenase n/a 164 PF01058 PMID: 12296727
e2ayxA2 A:700-816 CheY-like 2007.1.3.4 Sensor kinase protein rcsC n/a 18 PF09456
e7reqB2 B:476-638 CheY-like 2007.1.3.6 Methylmalonyl-CoA mutase n/a 289 PF01642
e1qo0D3 D:2-134 CheY-like 2007.1.3.7 Aliphatic amidase expression-regulating protein n/a 1 PF16968
e1y7pA2 A:79-217 CheY-like 2007.1.3.8 Hypothetical protein AF1403 n/a 18 PF18462
e1r8jA2 A:1-135 CheY-like 2007.1.3.9 Circadian clock protein KaiA n/a 1 PF16968
e2bonA2 A:5-119 Phosphofructokinase N-terminal domain 2007.1.4.1 Diacylglycerol Kinase NxKS; GGDG; LPLGTxND 106 PF00781 PMID: 17351295
e1u0tA2 A:5-40,A:76-133 Phosphofructokinase N-terminal domain 2007.1.4.2 Polyphosphate/ATP-NAD kinase GGDG; LPLGTxND 17 PF01513
e2f48A2 A:4-219,A:436-553 Phosphofructokinase N-terminal domain 2007.1.4.5 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase GGDG; LPLGTxND 743 PF00365
e4xz2B3 B:408-550,B:678-762 Phosphofructokinase N-terminal domain 2007.1.4.8 Phosphofructokinase GGDG; LPLGTxND 743 PF00365
e1b74A2 A:106-252 ATC-like 2007.1.5.18 Glutamate racemase n/a 108 PF01177 PMID: 10331867
e1b74A1 A:1-105 ATC-like 2007.1.5.19 Glutamate racemase n/a 108 PF01177
e3kwlA3 A:205-366 ATC-like 2007.1.5.2 Uncharacterized protein n/a n/a n/a
e3eisD2 D:4-116 ATC-like 2007.1.5.20 Arylmalonate Decarboxylase n/a 29 PF07302
e3kwlA4 A:367-495 ATC-like 2007.1.5.21 Uncharacterized protein n/a n/a n/a
e4ix1A2 A:7-127 ATC-like 2007.1.5.5 Hypothetical protein OPAG_01669 n/a 12 PF17645
e2dgdA2 A:2-107 ATC-like 2007.1.5.6 ST0656 n/a 12 PF17645
e1vl6A2 A:1-154 Aminoacid dehydrogenase-like, N-terminal domain 2007.1.6.1 Malate oxidoreductase GxGxxG 48 PF00390 PMID: 12033925
e1luaA2 A:2-97 Aminoacid dehydrogenase-like, N-terminal domain 2007.1.6.2 Methylene-tetrahydromethanopterin dehydrogenase n/a 38 PF09176
e1vi2A2 A:5-106 Aminoacid dehydrogenase-like, N-terminal domain 2007.1.6.3 Shikimate-5-dehydrogenase n/a 37 PF08501
e1a4iA2 A:2-126 Aminoacid dehydrogenase-like, N-terminal domain 2007.1.6.4 Dehydrogenase/cyclohydrolase n/a 1211 PF00763 PMID: 9519408
e1c1dA2 A:1-148 Aminoacid dehydrogenase-like, N-terminal domain 2007.1.6.7 L-phenylalanine dehydrogenase n/a 360 PF02812
e1sg6A2 A:4-183 Rossmann-like domain in dehydroquinate synthase-like enzymes 2007.1.7.2 3-dehydroquinate synthase GGG 77 PF01761 PMID: 15103156
e1rrmA2 A:2-185 Rossmann-like domain in dehydroquinate synthase-like enzymes 2007.1.7.5 Lactaldehyde reductase GGG 219 PF00465
e1wd7A1 A:8-43,A:165-261 Uroporphyrinogen III synthase (U3S, HemD) 2007.1.8.2 Uroporphyrinogen III Synthase n/a 76 PF02602 PMID: 11689424
e3mw8A2 A:2-34,A:152-238 Uroporphyrinogen III synthase (U3S, HemD) 2007.1.8.3 Uroporphyrinogen III Synthase n/a 76 PF02602
e3rg8A1 A:2-156 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 2007.1.9.1 Phosphoribosylaminoimidazole carboxylase n/a 633 PF00731 PMID: 21548610