Domain ID e4pe5B1

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: Periplasmic binding protein-like I
  • F: Unmapped domains
UID: 001295269
Type: Manual and representative domain
Range: B:30-147,B:286-394
Ligands: GLU GLY NAG QEL
PDB: 4pe5
PDB Description: Glutamate receptor ionotropic, NMDA 2B
UniProt: Q00960
Hsap BLAST neighbor: Q13224
Species: Rattus norvegicus

Structure of domain e4pe5B1

Domains in the same chain:

Download Pymol

e4pe5B1 B:30-147,B:286-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B2 B:148-285 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B3 B:395-528,B:762-802 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B5 B:529-539,B:660-761 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B4 B:551-569,B:602-659,B:821-841 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels

Domains in the same PDB:

e4pe5A3 A:25-142,A:273-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5A4 A:143-272 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5A6 A:395-535,A:757-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5A5 A:536-548,A:659-756 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5A2 A:549-582,A:605-658,A:805-830 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4pe5B1 B:30-147,B:286-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B2 B:148-285 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B3 B:395-528,B:762-802 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B5 B:529-539,B:660-761 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B4 B:551-569,B:602-659,B:821-841 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4pe5C1 C:25-142,C:273-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5C2 C:143-272 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5C3 C:395-535,C:757-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5C5 C:536-548,C:659-756 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5C4 C:554-658,C:805-833 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4pe5D3 D:32-147,D:286-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5D1 D:148-285 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5D4 D:395-528,D:762-802 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5D5 D:529-539,D:660-761 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5D2 D:540-567,D:602-659,D:821-838 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels

Structural contacts of domain e4pe5B1 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4pe5A3 B:x,y,z->A:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e4pe5D3 B:X-1,Y,Z->D:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol
e4pe5A3 B:x,y,z->A:-X,Y-1/2,-Z Class I glutamine amidotransferase-like Interaction Interface Pymol