Homologous cluster 'Middle domain in Argonaute homologs' representative domains
Cluster description:
Middle domain in Argonaute homologs cluster includes middle domain of Piwi-like proteins. These proteins contain ~40-amino-acid conserved C-terminal region (not includded in the middle domain), called the Piwi box (Cox et al., Genes Dev., 1998; PMID: 9851978). Domains from this culster belong to Piwi (PF02171) Pfam familiy (Cerutti et al., Trends Biochem Sci., 2000; PMID: 11050429)
| ECOD repr domain ID | Domain range | ECOD T-group | ECOD F-group ID | Protein name | Homology sign logo | Pfam seed alignment depth | Pfam | Comments |
|---|---|---|---|---|---|---|---|---|
| e1yvuA2 | A:315-490 | Middle domain in Argonaute homologs | 7590.1.1.5 | Argonaute (Ago) protein | n/a | 15 | PF02171 | |
| e5i4aA4 | A:258-433 | Middle domain in Argonaute homologs | 7590.1.1.6 | Argonaute protein | n/a | n/a | n/a | Dali Z-score = 13.0 with e6mfrA5 (7590.1.1.4, PF02171) |
| e1u04A4 | A:324-413,A:443-546 | Middle domain in Argonaute homologs | 7590.1.1.1 | Argonaute protein | n/a | 15 | PF02171 | |
| e1w9hA1 | A:11-172 | Middle domain in Argonaute homologs | 7590.1.1.3 | Piwi protein | n/a | 15 | PF02171 | |
| e4f1nA4 | A:735-952 | Middle domain in Argonaute homologs | 7590.1.1.4 | Argonaute protein | n/a | 15 | PF02171 | |
| e1zjcA2 | A:3-183 | Middle domain in Argonaute homologs | 7590.1.1.2 | Aminopeptidase | n/a | 250 | PF02073 | (Fernandez-Espla et al., Eur J Biochem., 1999; PMID: 10406960) |