e8kdbA04

Source: PDB

PDB: 8KDB chain A

Range: A:1012-1110,A:1117-1129,A:1132-1170,A:1176-1191,A:1198-1208,A:1210-1212,A:1214-1224,A:1231-1248,A:1257-1292,A:1297-1306,A:1308-1346

Length: 295 residues

3D structure (PDB)

Loading viewer...

Sequence

   1GESSFLDWAS DPYSCNLPQS QNITTMIKNI TARNVLQDSP NPLLSGLFTN TMIEEDEELA
  61EFLMDRKVIL PRVAHDILDN SLTGIRNAIA GMLDTTKSLR GGLTYSLLRK ISDLVQYETL
 121SRTLRLIVSD KIRYEDMCSV DLAIALRQKM WGRMISGLET PDPLELLGSE HCKICYSSGT
 181NYTWMYLPGN IKGVSSLRVP YFGSVTDERS NLSKPAKAAI RIAMIYTWAF GNDEISWMEA
 241SQIAQTTLDS LKILTPATST NLSHRLKDTA TQMKFSSTSL IRVSRFITMS NDNMS

DisulfideMetal-bindingFree thiolClick any cysteine to focus it in the 3D viewer

Position	P(Neg)	P(Dis)	P(Met)	Classification
15	0.498	0.336	0.167	Free thiol
138	0.836	0.137	0.028	Free thiol
172	0.816	0.134	0.050	Free thiol
175	0.533	0.349	0.118	Free thiol

Neg Dis Met

Metal	Cofactor	Metal Position	Coord. Residue	Atom
ZN	free ion	A 3003	CYS A1132	SG
ZN	free ion	A 3003	GLU A1164	OE2
ZN	free ion	A 3002	CYS A1177	SG
ZN	free ion	A 3002	CYS A1180	SG

Classification Summary

Total Cysteines4

Disulfide0

Metal-binding0

Free thiol4

Cite this domain

Per-cysteine three-state classification for ECOD domain e8kdbA04 from TriCyp (Classification of cysteine fates in structure predictions using a protein language model; Yuan, Durham, Cong, Schaeffer, 2026) — preprint URL pending.

ECOD Hierarchy

X-group: 4962

H-group: 4962.1

T-group: 4962.1.1

F-group: 4962.1.1.1