Citrus Sinensis ID: 000049
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2629 | 2.2.26 [Sep-21-2011] | |||||||
| Q92616 | 2671 | Translational activator G | yes | no | 0.970 | 0.955 | 0.336 | 0.0 | |
| Q54WR2 | 2667 | Translational activator g | yes | no | 0.863 | 0.851 | 0.331 | 0.0 | |
| Q10105 | 2670 | Translational activator g | yes | no | 0.696 | 0.685 | 0.337 | 0.0 | |
| P33892 | 2672 | Translational activator G | yes | no | 0.587 | 0.577 | 0.354 | 0.0 | |
| O94489 | 1047 | Elongation factor 3 OS=Sc | no | no | 0.101 | 0.254 | 0.340 | 5e-36 | |
| O14134 | 1057 | mRNA export factor elf1 O | no | no | 0.103 | 0.258 | 0.316 | 4e-32 | |
| P29551 | 1042 | Elongation factor 3 OS=Pn | N/A | no | 0.104 | 0.263 | 0.304 | 5e-32 | |
| P25997 | 1050 | Elongation factor 3 OS=Ca | N/A | no | 0.117 | 0.294 | 0.282 | 3e-27 | |
| P53978 | 1044 | Elongation factor 3B OS=S | no | no | 0.090 | 0.227 | 0.313 | 2e-26 | |
| P16521 | 1044 | Elongation factor 3A OS=S | no | no | 0.090 | 0.227 | 0.296 | 3e-26 |
| >sp|Q92616|GCN1L_HUMAN Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6 | Back alignment and function desciption |
|---|
Score = 1335 bits (3455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 918/2727 (33%), Positives = 1457/2727 (53%), Gaps = 176/2727 (6%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S+TL A V+T+S K R+ I ++ + ++ L + T Y D S
Sbjct: 8 SETLKRFAGKVTTASVKERREIL-SELGKCVAGKDLPEGAVKGLCKLFCLTLHRYRDAAS 66
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVG---------CYRLLKWSCLL 117
R+A+ I++ L E T A L+ +++ S S G L W+CLL
Sbjct: 67 RRALQAAIQQ-LAEAQPEAT-AKNLLHSLQS-SGIGSKAGVPSKSSGSAALLALTWTCLL 123
Query: 118 LSKSQFATVSK---NALCRVAAAQASLLHIVMQRSFRER-RACKQTFFHLFSQSPDIYKT 173
+ + F + +K + ++ Q LL V+ S + + L+ ++P + +
Sbjct: 124 V-RIVFPSRAKRQGDIWNKLVEVQCLLLLEVLGGSHKHAVDGAVKKLTKLWKENPGLVEQ 182
Query: 174 YTDELKDARIPYKHSPELICLLLEFLS--KSPSLFEKCRPIFLDIYVKAVLNAKEKPMKG 231
Y + P ++ ++ LL++F + K + + + LD Y+K +L +K KP K
Sbjct: 183 YLSAILSLE-PNQNYAGMLGLLVQFCTSHKEMDVVSQHKSALLDFYMKNILMSKVKPPKY 241
Query: 232 LSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILS 291
L +S PL ++S +F+ ++LP K L R+PE ++E+I LL SV LDLS+YA +I+
Sbjct: 242 LLDSCAPLLRYLSHSEFKDLILPTIQKSLLRSPENVIETISSLLASVTLDLSQYAMDIVK 301
Query: 292 VVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIG 351
+ ++ A+ + L+ + S+ A+E++ + A++GGSEG+L Q++
Sbjct: 302 GLAGHLKSNSPRLMDEAVLALRNLARQCSDSSAMESLTKHLFAILGGSEGKLTVVAQKMS 361
Query: 352 MVNALQELS-NATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADII 410
+++ + +S + G L+ + + + + E +E + +S +A W R +
Sbjct: 362 VLSGIGSVSHHVVSGPSSQVLNGIVAELFIPFLQQEVHEGTLVHAVSVLALWCNRFTMEV 421
Query: 411 QSDLLSFFASGLKEK---EALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKA 467
L +F K A+R +L+C+ + D +LQ LL LIQ V+ +++
Sbjct: 422 PKKLTEWFKKAFSLKTSTSAVRHAYLQCM-LASYRGDTLLQALDLLPLLIQTVEKAASQS 480
Query: 468 VQR---LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDC 524
Q +G+ A L++ K++ AD +AE ++ W L+ + + + ++ +D
Sbjct: 481 TQVPTITEGVAAALLLLKLSVADSQAEAKLS--SFWQLIVDEKKQVFTSEKFLVMASEDA 538
Query: 525 MACV-ELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVP- 582
+ V L L ++H HR L V+ + ++ +W +R+ A RK+++S+
Sbjct: 539 LCTVLHLTERLFLDHPHR-LTGNKVQQYHRALVAVLLSRTWHVRRQAQQTVRKLLSSLGG 597
Query: 583 -HLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA 641
L+ LL E LS + + +D + ++ ++P +Q + L VI+ V
Sbjct: 598 FKLAHGLLEELKTVLSSHKVLPLEALVTDAGEVTEAGKAYVPPRVLQ-EALCVISGVPGL 656
Query: 642 RG-----PSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCK 696
+G + ++ SHHPS+V + +W L L + + ++ + +
Sbjct: 657 KGDVTDTEQLAQEMLIISHHPSLVAV--QSGLWPAL---LARMKIDPEAFITRHLDQI-- 709
Query: 697 VLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQ 756
+ M+ Q+++N++ +L ++P + ++ +
Sbjct: 710 -----IPRMTTQSPLNQSSMNAMGSLSVLSPDRVLPQLISTITASVQNPALRLVTREEFA 764
Query: 757 VFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREV 816
+ TP G L Y I+ + +QD + K S ++
Sbjct: 765 IMQTPAGEL------YDKSIIQSA-------------QQDSIKKANMKRENKAYSFKEQI 805
Query: 817 SGAGKKDIGKSTKKADKGKTAKEEARELL---LNEEASIREKVQGVQRNLSLMLSALGEM 873
K+ K K + + +E+L L+ EA +R ++Q + L L L +
Sbjct: 806 IELELKEEIKKKKGIKEEVQLTSKQKEMLQAQLDREAQVRRRLQELDGELEAALGLLDII 865
Query: 874 AIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATA--- 930
NP +P LV PLL+SP+ + L+ C MP AL +
Sbjct: 866 LAKNPSGLTQYIPVLVDSFLPLLKSPLAAPRIKNPFLSLAACV-MPSRLKALGTLVSHVT 924
Query: 931 LRLI----VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFV 986
LRL+ V ++ +L +V A + + R+ G + PL +F+ V
Sbjct: 925 LRLLKPECVLDKSWCQEELSVAVKRAVMLLHTHTITSRVGKG---EPGAAPLSAPAFSLV 981
Query: 987 FPIIERILLS-PKRTGLHDD----VLQMLYKHMD----PLLP-----------LPRLRMI 1026
FP ++ +L P + ++ +LQ+L P P LPR+ M+
Sbjct: 982 FPFLKMVLTEMPHHSEEEEEWMAQILQILTVQAQLRASPNTPPGRVDENGPELLPRVAML 1041
Query: 1027 SVLYHVLGV-VPSYQAAIGSALNELCLG---------LQPNEVASALHGVYTKDVHVRMA 1076
+L V+G P Q L LC + EV L + + VR
Sbjct: 1042 RLLTWVIGTGSPRLQVLASDTLTTLCASSSGDDGCAFAEQEEVDVLLCALQSPCASVRET 1101
Query: 1077 CLNAV----KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY 1132
L + +PA T + + LW+ D E+ + + AE +W G D D
Sbjct: 1102 VLRGLMELHMVLPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDL 1160
Query: 1133 -SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA-- 1189
S L + + VR A AEAL+ A+ Y + L +Y + +DA
Sbjct: 1161 CSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLDALG 1220
Query: 1190 ---------GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAG 1240
W R G+ALAL+ + L + + + F + AL D + DVR ML+A
Sbjct: 1221 RVISESPPDQWEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAA 1280
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ ++ HG++NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV
Sbjct: 1281 LATLNTHGKENVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKP 1339
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
+V KL+ L+TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+
Sbjct: 1340 IVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAY 1399
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+
Sbjct: 1400 GLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVH 1459
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LP LL+ F D VREAA+ A+A+MS LSA GVKLVLPSLL LE+++WRTK SV+
Sbjct: 1460 VLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVE 1519
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P
Sbjct: 1520 LLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAP 1579
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+
Sbjct: 1580 VLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQII 1639
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+
Sbjct: 1640 GNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLP 1698
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLT 1718
WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+
Sbjct: 1699 WLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIM 1758
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP
Sbjct: 1759 MFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLP 1818
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
+E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG
Sbjct: 1819 QLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALG 1878
Query: 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS 1898
++RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ LAS+
Sbjct: 1879 VERRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTC 1938
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S +
Sbjct: 1939 ADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDA 1998
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
+L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S
Sbjct: 1999 VLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVS 2058
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA
Sbjct: 2059 EFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPA 2115
Query: 2079 LLSAMGDD--DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
++ A+ + D Q + V D+ G ++ LL+ + +R+++A ++
Sbjct: 2116 VMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIIL 2175
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
+ SK +++S LI L +DS + +W+AL+ + + Q + I+ +
Sbjct: 2176 NIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEEL 2235
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGE 2255
I ++ + + +PGFCLP K + +LP+ +G+++GS E +E+AA LG
Sbjct: 2236 HKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGL 2289
Query: 2256 LIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQ 2315
+I +TS +L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQ
Sbjct: 2290 VIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQ 2349
Query: 2316 TTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ-VSDAGIREAILTALK 2374
TTF K LQDS R VR AA ALGKL ++ +VDPL +LL+ ++ + D G+R+ +L AL+
Sbjct: 2350 TTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALR 2409
Query: 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE- 2433
V++ AG V + ++ + S+L ++ HD+D+ R+S+A LG + + + +L+ +LQ+
Sbjct: 2410 FVIQGAGAKVDAVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQC 2469
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
LL S W RHG L + + P + + + + SS ++ P+ +
Sbjct: 2470 LLADVSGIDWMVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGV 2529
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN------ 2547
+ +G L+ H I++G + L V L + SS++R L A K + AN
Sbjct: 2530 RGMGFLMRHHIETGGGQLPAKLSSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPP 2584
Query: 2548 --PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKF----- 2600
P AI + AL + KD +T VR +++ V+ ++ +G E Q K
Sbjct: 2585 LDPQAIKPILK----ALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLSKILDVAS 2640
Query: 2601 ---ITGLDARRLSKFPEHSDDSEDSEN 2624
+ ++ R L K +D +E ++
Sbjct: 2641 LEVLNEVNRRSLKKLASQADSTEQVDD 2667
|
Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating GCN2 protein kinase (EIF2AK1-4) activity. Homo sapiens (taxid: 9606) |
| >sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/2475 (33%), Positives = 1308/2475 (52%), Gaps = 204/2475 (8%)
Query: 213 FLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIG 272
L+IY K V+ + ++ ++ + F LF ++ ED QSI+LP + +KR+ + + + +
Sbjct: 260 LLNIYNKTVIGSSQQKIEE-HKFFKRLFNQLTNEDLQSIILPPLSRHIKRDQDQVFKILI 318
Query: 273 ILLKSVNLDLS---------KYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPD 323
+L++++ D + +L V+ +E RK T + E+S +
Sbjct: 319 FILENLSSDFNVIDLSSLLKSMLLPMLLPVIQSTISIEENRKLLKKT-FTLIIERSKDTK 377
Query: 324 ALEAM----FYAIKAVIGGSEGRLAFPYQRIGMV---NALQELSNATE-----GKYLNSL 371
+ +M +V G +L ++ N ++ LS TE + L S+
Sbjct: 378 LISSMITDDLLKTLSVAGNPSQKLIIISIISSIISTKNFIERLSLTTEKLQLSKQILQSI 437
Query: 372 SLTICKFLLSCYKDEGNEEVKL--AILSAVASWAKRSADIIQSDLLSFFASGLKEKEALR 429
S+ + K L KD N+ KL ++ V +++ II + LK + +
Sbjct: 438 SIYLEKEL---NKDNRNKGFKLLGKVMKMVEELPEQTIKII--------TNSLKNDDDII 486
Query: 430 RGHLRCLRVICTNTDAVLQVSSLLGP--------LIQLVKTGFTKAVQ------------ 469
+G + +L +S LGP +IQ++ GFT+ +
Sbjct: 487 KGQV------------ILSLSKSLGPEANGTNKKVIQII-NGFTETINTILKNVKNAKTC 533
Query: 470 -------RLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVD 522
L + + + + DI + + K + +L + L I + S
Sbjct: 534 DPSTTTASLHYMLSLITTTGVPKNDIFTKYSTDKTTISNLYASTS-FLHTDGFIQRTSKK 592
Query: 523 DCMACVELLVVLLVEHSHRVLETFSVKL-----LLQLVLLFTCHPSWDIRKMAHDATRKI 577
D ++LL+ L + RV S+KL L VL H W + K + R I
Sbjct: 593 D--HAIDLLLTLFL----RVKSFPSIKLNDKSPLYSSVLNCLLHSQWSVSKHSAIKIRSI 646
Query: 578 IT-------SVPHLSEALLLEFSNFL---SLVGEKIIISKTSDTDDFVDSQVPFLPSVEV 627
++ P LS LL+EFS L SL+ II+ ++ + + + +
Sbjct: 647 LSRNDSVDIDYPLLSNQLLIEFSTILFDDSLIITPQIINSNVESTTTTTTTISNKKNYLI 706
Query: 628 QVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIV 687
+++L ++ P S + C +HP I + W+R+ ++ +V +
Sbjct: 707 AFRSILS-KNIKSELYPMLS---LIC-YHPFI------NYNWKRVSSLIQN---DVNTTL 752
Query: 688 SADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVH 747
S++ + K + N QQA +++ LM+ + + E+ +K + +
Sbjct: 753 SSNAIEISKYIFEKGLNQKKNKSYQQAFQQAINGLMNY---NVPLLNEELVKLMVKALSY 809
Query: 748 D---SLSENDIQVFYT-PEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
+ ++++ +++T P + +Q ++V ++N ++ K + EEQ
Sbjct: 810 EPVLAITQQQWSIYHTLPTELFVEKQ----EQLVESRNDRKVKP--KTAEEQ-------- 855
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA-RELLLNEEASIREKVQGVQRN 862
+ E + + + + KK G+ K+E R+ L +A IR+ VQ V
Sbjct: 856 ----RDEESRKRI---------EEKKKIQSGELEKQEKERQKQLAAQAVIRKDVQDVIDR 902
Query: 863 LSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPL 920
L L + MA +NP F + ++ + L++ I + KL C
Sbjct: 903 LHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVFEKLICCVP--- 959
Query: 921 CNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPV 980
+ LD + A I P++ E + L ++I+ + S L
Sbjct: 960 SRFKLDRSFARHYIYIINNIYYR---PTLSEI----QILGFIQKILTHIRESIAKEALSG 1012
Query: 981 DSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQ 1040
+F + +PII+ L + + + ++++ KH PR MIS L V+ +
Sbjct: 1013 FAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISSLIIVVSTNSRLE 1072
Query: 1041 AAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVST 1100
A + + +L G++ +++ + G+ +K V VR CL A++ IP++ + S +
Sbjct: 1073 AQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIYSPSFVWEDKYIG 1132
Query: 1101 SLWIAVHDPEKSVAEA-AEDIW--DRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATA 1157
SLW A D + A AE IW D+ K LS S +NV + A A
Sbjct: 1133 SLWFARFDNHDANTSALAEKIWLATNQPTQLPEDF---MKLLSDSTFNVNSETRKINALA 1189
Query: 1158 LDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD-VLRTKD 1212
+ E + I + LF +Y ++ R +A AL + ++ +
Sbjct: 1190 IKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALSGLGNAIVEPEV 1249
Query: 1213 LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
L + T +I R L D +V ++ G+ II++ G L FE +L + + +
Sbjct: 1250 LKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEAFLARPDNGTGE 1309
Query: 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332
D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S C++ L+ S +
Sbjct: 1310 EDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGISKCIAQLIPSFK 1369
Query: 1333 DEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
+ L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I TL+ + D+
Sbjct: 1370 KQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSILDTLQSYIEDKK 1429
Query: 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451
R+GAL AFECLC +GR+FEPY+I +LP LLV F D V VR+A A+A+MSQL
Sbjct: 1430 HPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDATADTAKAIMSQL 1489
Query: 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
S GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP IVPKLT VL DT
Sbjct: 1490 SGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTIVPKLTYVLNDT 1549
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
H KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ LL T +V+T+D
Sbjct: 1550 HTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENLLSTNYVHTIDP 1609
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L+P +K VL+DP
Sbjct: 1610 ASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNILMPVMKTVLLDP 1668
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
IPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQGLSEVLA+L
Sbjct: 1669 IPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQGLSEVLASLDI 1728
Query: 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
F ++ +++ + R VR+G L++F + P SLG F YL +VLP +L GLAD+++
Sbjct: 1729 SRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLPQVLKGLADDSD 1788
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L GDLLFK+AGT+
Sbjct: 1789 PVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFGDLLFKLAGTTA 1848
Query: 1812 KALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ + S DD+ + G I ++LG+++ +L++LYM+R D + SVRQ L
Sbjct: 1849 QEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFDNNSSVRQKVLL 1908
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926
+WK IV+NTPKTL+EI+P L+ +ISS+ S++ E+RQ++ + LG++V KL +R+LP I+P
Sbjct: 1909 IWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSKLSDRILPEILP 1968
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
IL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALCD +++VRE+A
Sbjct: 1969 ILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALCDPLIDVREAAA 2027
Query: 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHILPK 2043
AF L+ + G +A +EI+P L+ L++ D ALDGL+Q++ VR++ VLP ++PK
Sbjct: 2028 KAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVRSSIVLPVLIPK 2087
Query: 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVT 2102
L+ P+S N AL +LA AG GL HL TI+P+L+ + + + + KEAA ++
Sbjct: 2088 LLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNAKEIKEAAVSIC 2147
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP-NMISTLIVL 2161
IDE+G ++L+ L++ +IR + LIG FY + +V E P ++ +L+ L
Sbjct: 2148 KSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNT--MVTEYPEELLLSLLSL 2205
Query: 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221
+D D+ AA AL + S+ K+ +Y+ V + I ++ + IPGF
Sbjct: 2206 FNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEEVST----IPGF 2260
Query: 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
CLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+ ITGPLI +IG
Sbjct: 2261 CLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVMQITGPLILVIG 2320
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341
D+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR++AA ALG L
Sbjct: 2321 DKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVRTNAASALGLLM 2380
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
LS+ VD LV L++ + +D+ +E+ L AL+ + + K V A + + + D +Y
Sbjct: 2381 TLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLDKAIATIVDFLY 2439
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWA--ARHGSVLVFATFLRH 2459
D +R A +G S+C L +L Q + SPS + +R+G L +
Sbjct: 2440 QPSDDLRSMVAQTIGASSKCF--TSLTELNQFIKTNLISPSQSVLSRYGKSLALGEIFKA 2497
Query: 2460 NPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
+ + S SP +I+ +++ +DEK P+RE+S +L+ + P T D+
Sbjct: 2498 SGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----ASPL--TYAKDL 2551
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLKDGSTPVRLA 2576
+ S+ + D SS V AL+ +K K+N ++ + P + + + P++LA
Sbjct: 2552 VPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLKERTNLPLKLA 2611
Query: 2577 AERCAVHAFQLTRGS 2591
AER VH+ Q+ + S
Sbjct: 2612 AERTLVHSLQIFKES 2626
|
Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating gcn2 kinase activity. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/1957 (33%), Positives = 1080/1957 (55%), Gaps = 127/1957 (6%)
Query: 711 EQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQG 770
++ AAI S+S ++ + P+++ F ++ S+S D++++ TPEG+L
Sbjct: 743 KETAAIASISMIVFVAPEESIPLFVNVFRNQLLHLNISSVSSTDLEIWKTPEGVLWDN-- 800
Query: 771 VYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKK 830
++ K++K+ + YE + V + SAK+ + K
Sbjct: 801 -----VLEKKSSKKLDKNTKDYETKRWEAEVRAKQSAKKPA------------------K 837
Query: 831 ADKGKTAKEEARELLLNEEASIREKVQ----GVQRNLSLMLSALGEMAIANPVFAHSQLP 886
K + A +A+ L+ EA IR +V ++R L ++ S LGE P
Sbjct: 838 LSKDQQALVDAQ---LDAEAKIRSRVNLIALSLERGLGIIRS-LGEAVQLAPALWVEDAI 893
Query: 887 SLVKFVDPLLQS-PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDL 945
++ F + L S P + ++AY+ + + + +++L I+ V+S
Sbjct: 894 DVLLFHNVLKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNSS- 952
Query: 946 IPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD 1005
++ E K+ I+ L + + F +FP++ + + + D+
Sbjct: 953 -ENIKELTKS---------ILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNSDEEDE 1002
Query: 1006 V-LQMLYKHMDPLLPLP-------RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN 1057
LQ+L + L R ++I L H+L + P+ ++L LC GL
Sbjct: 1003 AELQLLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHST 1062
Query: 1058 EVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ + + H +R A L A++ E +++ ++D ++
Sbjct: 1063 YTDEELNLLLSNLFHPESSIRSAVLQALQAFDL-------SRFEFIKEIFLELYDDNETN 1115
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTL 1172
A A I + G D T + L + + ++ ++L LDE+ + Q L
Sbjct: 1116 ASIAHQISTQNGLDATETSFFELQIFFTQDSDYLQQIIGKSLIDLLDEFEELGQFIPKEL 1175
Query: 1173 FSLY----------------IRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVI 1216
Y I+ +G D G + R+ +A++ + L + L
Sbjct: 1176 MRTYRENALPSAPEYDEYGIIKKETIGRD---LGRIARESVAVSFFHISKYLSSNLLLPF 1232
Query: 1217 MTFLISRALA-------DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ FL++ + A D + V +ML AG + I + G V L +FE LN +
Sbjct: 1233 LEFLLTASEAEAQIPVTDASQKVSSKMLEAGKLAIFQSGAHQVEALMELFEQKLNVDSLP 1292
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ D +RE V+ G +A+HL +DP++ V+D LL VL+TPSE+VQ AV+ CL PL++
Sbjct: 1293 TDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLSTPSESVQLAVAVCLPPLVK 1352
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
++ L ++LM S +++GAA+GLAG+VKG+GI + + + I +L E +++
Sbjct: 1353 KSLGKSKEYYELLSNKLMNSTSLADQKGAAYGLAGLVKGYGIKAFQDFNILDSLSELISN 1412
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
R +A R+ AL A E LG FEPY+ +LPLLL +F D VREA A + +MS
Sbjct: 1413 RQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVREATMDAVKQIMS 1472
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509
QLSA GVKL+LP+LL GL + WR+K++SV++LG M+Y AP+QLS LP I+PKL+EVLT
Sbjct: 1473 QLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLT 1532
Query: 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569
D+H +V++ +L + G VI NPEI +LVPTLL L+D +T +L+ LL+T+FV+ +
Sbjct: 1533 DSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYL 1592
Query: 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
D PSLAL++PI+ GLRER+A TK+++A+I G M SL TEP+++ Y+ L+P +++VL+
Sbjct: 1593 DPPSLALVIPILKYGLRERNAGTKRQSAKIFGLMASL-TEPENLAVYLESLMPRLREVLI 1651
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
DP+P+ R+ AA+A+GSLI +GE+ FP L+ L + L+S+ S V+R GAAQGLSE+LA L
Sbjct: 1652 DPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILAGL 1711
Query: 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749
G E +LP+I++N S +R+ +++L YLP + G +FQ YL + +P IL GLAD+
Sbjct: 1712 GLARLEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADD 1771
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
+E V+ A+L A ++V +YAT S+ LLLP +E G+F++ WRIR SSV+L+GDL+FK+AG
Sbjct: 1772 SELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFDNAWRIRLSSVQLVGDLVFKLAGI 1831
Query: 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869
+ KAL E ++EG ++ +A+++++G+++ + +L+ LY+VR D++ VR A+ +WK
Sbjct: 1832 NRKALQE-DEEEEGTHSDVSRKALLDIIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWK 1890
Query: 1870 TIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929
IV NTP+T++EI+P L + ++S+L SSS++RR + ++LG+L++K G VLP ++P+L
Sbjct: 1891 AIVVNTPRTVREILPTLTSIIVSNLNSSSNDRRTMCVKSLGDLLKKAGFDVLPQLLPVLK 1950
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
+GL+ ++ R GVCI L E++ SA QL + D+ + +R AL D LEVRE+A AF
Sbjct: 1951 QGLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAEAF 2010
Query: 1990 STLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049
+L G +A+D+++P LL LE + S+ AL L++I+S R++ + P ++P L+ P+
Sbjct: 2011 DSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPV 2070
Query: 2050 SAFNAHALGALAEVAGPGLNFHLGTILPAL----LSAMGDDDMDVQSLAKEAAETVTL-V 2104
SAFNA AL +LA+VAG LN L +IL AL L++ GDD + + A + V L V
Sbjct: 2071 SAFNARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNG----AIDKVNLSV 2126
Query: 2105 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164
D+EG++ L++ R +A + F++N KL + + I L D
Sbjct: 2127 KDQEGLQILMAHFYSFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLFED 2186
Query: 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224
V AA A + +V+++ K+ S + + ++ R + +P F +
Sbjct: 2187 KSQDVVVAAVAAQNTLVSALRKDQLDSLVSIAYHSL--------RDVGSQGVNLPAFEVA 2238
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ + +LPIFL GL+ G+ + REQ+ALG+ +++ T L+ FV ITGPLIRIIG+RF
Sbjct: 2239 QGVNSILPIFLYGLMHGTMDQREQSALGIADIVLKTEPSKLRPFVTQITGPLIRIIGERF 2298
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSAL 2343
P +VK AIL TL+II+ K L+PFLPQLQ TF KCL D S+ +RS AA ALG L L
Sbjct: 2299 PVEVKCAILYTLNIILSKISTFLRPFLPQLQRTFAKCLGDPSSEVIRSRAATALGTLITL 2358
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
TR+ P++ +L+S + DAG+R+A+L AL V+ +G++++ A + +L ++
Sbjct: 2359 QTRLAPIITELVSGARTPDAGVRKAMLNALFAVVSKSGQNMNEASAEAIEQLLDEISAES 2418
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQ-ELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+H+ V A + G + + D Q LL+ ++L+L + SVL+ ++
Sbjct: 2419 SEHM-VICAKLYGALFSHLPDAQAKQLLESKVLSLEIQSEF-----SVLILNAAVKFGSQ 2472
Query: 2463 AI---SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILA 2519
I +S + SI+ +SL+ E + E ALG+ LL I N +V+ L
Sbjct: 2473 KIIELKLSDIVCSIIS--TASLQKE-VTIAENGILALGKALLADIPQSFGNAKNLVEALK 2529
Query: 2520 SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+ A S + RR AL ++ V+K N S I H+++ PA+ C++ PV+LAAE
Sbjct: 2530 VNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPVKLAAEA 2589
Query: 2580 CAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHS 2616
+ FQL + K+I L+ R F ++S
Sbjct: 2590 AFLALFQLVEDDSVL---NKYIETLEGPRARSFVDYS 2623
|
Acts as a translation activator that mediates translational control by regulating gcn2 kinase activity. Translational activator of gcn4. May be involved in sensing charged tRNA and stimulating the kinase activity of gcn2 in amino acid-starved cells. Required for the phosphorylation of eIF-2-alpha by the protein kinase gcn2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/1624 (35%), Positives = 917/1624 (56%), Gaps = 80/1624 (4%)
Query: 1015 DPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELC--LGLQPNE--VASALHGVYTKD 1070
DP +PR+ ++ VL +L +PS N LC + + PN+ + L + + +
Sbjct: 991 DP--SIPRISIVEVLLSLL-SLPSKAKIAKDCFNALCQSISVAPNQEDLDMILSNLLSPN 1047
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
VR L + + L ++ S ++I D + S E A+ IW+ +
Sbjct: 1048 QFVRSTILETLD-----NEFELEPFMKYSPEVFICRFDSDPSNREIADFIWEFNKFVVND 1102
Query: 1131 DY-SGLFKALSHSNYNVRLAAAEALA----TALDEYPDSIQGSLSTLFSLY--------- 1176
+ LF + + +RL AA A A + +S + L+ L + Y
Sbjct: 1103 ELLKSLFPLFNQDDSGLRLFAANAYAFGAVSLFTSEENSSKDYLNDLLNFYKEKAKPLEP 1162
Query: 1177 -IRDIGL---GGDNVDAGWLGRQGIALALHSAADVLRTKDLPV--IMTFLISRA-LADTN 1229
+ GL W GR +A+ L A +D V I+ FL+ L D
Sbjct: 1163 ILDQFGLVLVSASEQKDPWQGRSTVAITLKIMAKAFSAEDDTVVNIIKFLVDDGGLVDRE 1222
Query: 1230 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289
VR M AG+ +I HG N L PIFE L+ ++E V+I G LA+
Sbjct: 1223 PIVRQEMKEAGVELITLHGSQNSKDLIPIFEEALSSSTDSA-----LKENVIILYGTLAR 1277
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQ 1345
HL + D ++H ++++LL L+TPS +Q+AVS+C++PL+ Q + D L+ +LL+
Sbjct: 1278 HLQQSDARIHTIIERLLSTLDTPSADIQQAVSACIAPLVFQFKQKVGDYLGILMEKLLNP 1337
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405
+ S R+GAA+G+AG+VKG+GIS+L ++ I L E D+ KRRE F+
Sbjct: 1338 TVASSM---RKGAAWGIAGLVKGYGISALSEFDIIRNLIEAAEDKKEPKRRESVGFCFQY 1394
Query: 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465
L E LG+ FEPYVI++LP +L D V VR+A A +A+M+ + GVK ++P +
Sbjct: 1395 LSESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAIMAHTTGYGVKKLIPVAVS 1454
Query: 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525
L++ AWRTK+ SVQLLG MAY P QLS L IVP++ VL D+H +V+ A +L++
Sbjct: 1455 NLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGVLNDSHKEVRKAADESLKR 1514
Query: 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585
G VI+NPEI LVP LL + DP +T+ +LD L+QT FV+ +D PSLAL++ I+HRG+
Sbjct: 1515 FGEVIRNPEIQKLVPVLLQAIGDPTKYTEEALDSLIQTQFVHYIDGPSLALIIHIIHRGM 1574
Query: 1586 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+RSA K+KA +IVGNM LV + KD+IPY+ L+ EV+ +VDP+P R+ AARA+G+
Sbjct: 1575 HDRSANIKRKACKIVGNMAILV-DTKDLIPYLQQLIDEVEIAMVDPVPNTRATAARALGA 1633
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
L+ +GEE FPDL+ LLD L ++ + +R G+AQ L+EV++ LG + +LP I+
Sbjct: 1634 LVERLGEEQFPDLIPRLLDTLSDESKSGDRLGSAQALAEVISGLGLTKLDEMLPTILAGV 1693
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
++ RA +R+G++ L +LP G QF Y+ Q++ IL GLAD +E++RD AL AG ++V
Sbjct: 1694 TNFRAYIREGFMPLLLFLPVCFGSQFAPYINQIIQPILSGLADNDENIRDTALKAGKLIV 1753
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
++YAT ++ LLLP +E G+F++N RIR SSV+L G+LLF+V G S + E +D +
Sbjct: 1754 KNYATKAVDLLLPELERGMFDENDRIRLSSVQLTGELLFQVTGISSRN--EFSEEDGDHN 1811
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
E G+ +++VLG+D+R+ +LAAL++ R+D S VR + +WK +V NTP+ +KEI+P
Sbjct: 1812 GEFSGK-LVDVLGQDRRDRILAALFVCRNDTSGIVRATTVDIWKALVPNTPRAVKEILPT 1870
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS-RRQGVC 1944
L +++ LASSS+ R +A + LG+LVR++G L ++P L L + S S RQGVC
Sbjct: 1871 LTGMIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPSLEESLIETSNSDSRQGVC 1930
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
I L E++ SA + F ++ IRTAL D VRE+A L+F G A+DE+
Sbjct: 1931 IALYELIESASTETISQFQSTIVNIIRTALIDESATVREAAALSFDVFQDVVGKTAVDEV 1990
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
+P LLH LE SD AL GL++I+S ++ + P ++P L+ P+ AF A ALG+LAEVA
Sbjct: 1991 LPYLLHMLESSDNSDFALLGLQEIMSKKSDVIFPILIPTLLAPPIDAFRASALGSLAEVA 2050
Query: 2065 GPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTL-VIDEEGVESLVSELLKGV 2121
G L L I+ AL+ A+ +D + + A + V L V D+EG+ L+ +++ +
Sbjct: 2051 GSALYKRLSIIINALVDAIIGTSEDESTKGALELALDRVFLSVNDDEGLHPLLQQIMSLL 2110
Query: 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
+ R + + F+ + L PN +S I+ L D D V + ALS ++
Sbjct: 2111 KSDNIEKRIAVLERLPNFFDKTVLDFDVYIPNFVSHAILSLDDEDQRVVNGNFNALSTLL 2170
Query: 2182 ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 2241
V K P+ K+++ A + R+ + + F LP+ +LPIFL GL+ G
Sbjct: 2171 KKVDK---PTLEKLVKPAKQSLALTGRQGQD-----VAAFKLPRGPNCVLPIFLHGLMYG 2222
Query: 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301
S + RE++AL + +++ T +LK FV ITGPLIR++G+RF +K+AIL L+++
Sbjct: 2223 SNDEREESALAIADVVSKTPAANLKPFVSVITGPLIRVVGERFSSDIKAAILFALNVLFI 2282
Query: 2302 KGGIALKPFLPQLQTTFIKCLQDSTR-TVRSSAALALGKLSALSTRVDPLVGDLLS-SLQ 2359
K + L+PF+PQLQ TF+K L D+T T+R AA ALG L RVDPLV +L++ + Q
Sbjct: 2283 KIPMFLRPFIPQLQRTFVKSLSDATNETLRLRAAKALGALIEHQPRVDPLVIELVTGAKQ 2342
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
+D G++ A+L AL V+ AG ++ K + +++++ + +D + V+ A ++G +S
Sbjct: 2343 ATDEGVKTAMLKALLEVIMKAGSKLNENSKTNIVNLVEEEMLGSNDKLAVAYAKLIGSLS 2402
Query: 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+ + + + +LQ+ + L + ++L +FL+ P+ I + L + + +
Sbjct: 2403 EILSNDEAHKILQDKV-LNADLDGETGKFAILTLNSFLKDAPTHIFNTGLIDEFVSYILN 2461
Query: 2480 SLKDEKFPLREASTKALGRLLLHQ---------------IQSGPANTTVVVDILASVVSA 2524
+++ E T A G+LLL + + G N ++++ L+ V
Sbjct: 2462 AIRSPDVYFGENGTIAAGKLLLLEGEKRSPFVKKDAAEPFKIGDENINLLINELSKAVLQ 2521
Query: 2525 LHDDSSEVRRRALSALKSVAKAN-PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVH 2583
+S++VRR AL ++++A+ I + + GP++ CL+D P++LAAE+ +
Sbjct: 2522 PASNSTDVRRLALVVIRTLARFKFDECIKQYFDVVGPSVFSCLRDPVIPIKLAAEKAYLA 2581
Query: 2584 AFQL 2587
F+L
Sbjct: 2582 LFKL 2585
|
Acts as a translation activator that mediates translational control by regulating GCN2 kinase activity. Translational activator of GCN4. May be involved in sensing charged tRNA and stimulating the kinase activity of GCN2 in amino acid-starved cells. Required in vivo for the phosphorylation of eIF-2-alpha on 'Ser-52' by the protein kinase GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 158/276 (57%), Gaps = 10/276 (3%)
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAV 1436
+ + + + L D+N A RE L E + + EPY++++LP ++ +D+ AV
Sbjct: 53 VFSAISKQLNDKN-ATARERVLKGLEAVANHGSVAADVEPYLVELLPAVIAKVADKQNAV 111
Query: 1437 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ 1495
R+AA A++A++ + VK ++PS+L+ + W K +S+QLL + AP QLS
Sbjct: 112 RDAAIAASKAIVRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSY 171
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
LP+I+P ++E + DT +V+ + + +V ++I N +I +P L+ + P +
Sbjct: 172 SLPQIIPVVSESMWDTKAEVKKQSKETMTKVCTLIANADIDRFIPELINCIAHP-EEVPE 230
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
++ L TTFV V AP+L+++VP++ RGL ERS K+K A I+ NM LV +P+ + P
Sbjct: 231 TIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSKLVEDPQVVAP 290
Query: 1616 YIGLLLP---EVKKVLVDPIPEVRSVAARAIGSLIR 1648
++ LLP +K + D PE RSV RAI +L R
Sbjct: 291 FLPKLLPGLYHIKDTIGD--PECRSVVQRAITTLER 324
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14134|ELF1_SCHPO mRNA export factor elf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 161/278 (57%), Gaps = 5/278 (1%)
Query: 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ 1432
+LK G L ++ S RE A++ F + + LG E + LP +L +FSD+
Sbjct: 50 TLKTTGFLDGLERAARNKKSGFHREAAMIGFATVIKNLGTPSEVVFLPYLPTILDSFSDR 109
Query: 1433 VVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKA--WRTKQSSVQLLGAMAYCA 1489
VR+AA+ AA+A++ L A V+ ++PSL+ L+D + W +K +++QLLG++A +
Sbjct: 110 GEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDDSSIKWPSKVAALQLLGSLASSS 169
Query: 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549
P+ ++ + ++P + E + DT P++ A T + + SV++N +I +P L+ + P
Sbjct: 170 PKAVADYMAALIPCIKERMHDTKPEISRAAITCMLNLCSVVENNDIIPHIPKLVDCMAHP 229
Query: 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ + + L TTFV TV++ +LA+LVPI+ R L +RS + I N+C LV +
Sbjct: 230 -ETLEACIKDLSATTFVATVESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288
Query: 1610 PKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSL 1646
P + ++ L+P+V+++ +PEVR++A+ A+ +L
Sbjct: 289 PAEASDFLPELIPDVERIAQTAAMPEVRALASHALTTL 326
|
Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P29551|EF3_PNECA Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAA 1440
TL E + +++ R E AL A + + EPY++++LP +L ++V AVR A
Sbjct: 53 TLEEQIESKDTLAR-EQALKALLLTLDATNKRVEPYLVRLLPRVLKQVGLEKVAAVRTQA 111
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499
A ++ ++ VK +L + ++ W K + +LL + AP Q+S LP+
Sbjct: 112 STVAEDIIKTMNPYAVKTILSHVTNSIKTSGKWMEKMCAFRLLDMLVEKAPCQMSYRLPE 171
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
++P L+E + DT +++ + + V ++I NP+I +P L+ + P + ++
Sbjct: 172 LIPILSESMWDTRTDIKNQARKTMTSVCTLISNPDIDKFIPVLIDCIAQP-EKVPETIHT 230
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L TTFV V A +L+++VP+++RGL ER K+K+A I+ NMC LV +P + P++
Sbjct: 231 LGATTFVQEVHASTLSIMVPLLYRGLNERETTIKRKSAVIIDNMCKLVEDPYIIAPFLPK 290
Query: 1620 LLP---EVKKVLVDPIPEVRSVAARAIGSLIR--GMGEENFPDLVS 1660
L+P +K+ + D PE RSV R++ +LIR + E P++++
Sbjct: 291 LIPTLEHIKETIGD--PECRSVVNRSLATLIRVGNVKEGKIPEVLN 334
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Pneumocystis carinii (taxid: 4754) |
| >sp|P25997|EF3_CANAL Elongation factor 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 17/326 (5%)
Query: 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRRE 1397
++S LL +L +D E A + F SS+ ++ + E L + +K +
Sbjct: 13 VLSELLSKLQVADNKDE-------AASNISTFLNSSIVEHDVPVEFFEDLKKQIQSKDAK 65
Query: 1398 GALLAFECL-----CEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452
+L A + L EPYV+ ++ + V D+ V+ AA A A+ S ++
Sbjct: 66 VSLAALDAYKHIASTNGLSPSVEPYVVDLVSEVAVKAGDKNKDVQTAASDALLAIASAIT 125
Query: 1453 AQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
VK +LP L+ L + W K + ++ + + A Q++ +P+++P L+E + DT
Sbjct: 126 PTAVKAILPKLIDNLTNTNKWTEKVAILRAVSQLVDTAKAQIALRMPELIPVLSESMWDT 185
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
+V+ A + + I N +I +P L+ + P + ++ +L TTFV+ V
Sbjct: 186 KKEVKEAATATMTKSTETIDNKDIEKFIPQLISCIAKPTE-VPETVHLLGATTFVSEVTM 244
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD- 1630
+L+++ P++ RGL ER K+KAA IV NMC LV +P+ + P++ LLP +K +
Sbjct: 245 ATLSIMAPLLSRGLAERDTAIKRKAAVIVDNMCKLVEDPQIVAPFMDKLLPGLKNNFANM 304
Query: 1631 PIPEVRSVAARAIGSLIR--GMGEEN 1654
PE R V RA+ +L R +GE +
Sbjct: 305 ADPEAREVTQRALNTLRRVGAVGEND 330
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|P53978|EF3B_YEAST Elongation factor 3B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 1473
EPY++ +P + + V+ AA A +A+ S ++ VK +LP L+ LE W+
Sbjct: 85 EPYIVATVPSVCSKAGSKDNDVQLAATKALKAIASAVNPVAVKALLPHLIHSLETSNKWK 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + ++++ + A +Q++ +P+++P L+E + DT V+ A T + + + N
Sbjct: 145 EKVAVLEVISVLVDAAKEQIALRMPELIPVLSESMWDTKKGVKEAATTTITKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P L+ + +PN+ ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPKLIECIANPNE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLAERETSIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+KAA I+ NMC LV +P+ + P++G LLP +K + D PE R V +A+ +L R
Sbjct: 264 RKAAVIIDNMCKLVEDPQVVAPFLGKLLPGLKNNFATIAD--PEAREVTLKALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Weakly expressed functional homolog of translation elongation factor 3A (YEF3), not required for survival. Can complement loss of YEF3 when expressed from the YEF3 or ADH1 promoters. Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWR 1473
EPY++Q++P + ++ ++ A ++++ ++ +K +LP L + E W+
Sbjct: 85 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 145 EKIAILAAISAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 264 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2629 | ||||||
| 296085156 | 2636 | unnamed protein product [Vitis vinifera] | 0.992 | 0.989 | 0.833 | 0.0 | |
| 359476554 | 2613 | PREDICTED: translational activator GCN1 | 0.986 | 0.992 | 0.832 | 0.0 | |
| 359476556 | 2461 | PREDICTED: translational activator GCN1 | 0.930 | 0.993 | 0.821 | 0.0 | |
| 356506010 | 2616 | PREDICTED: translational activator GCN1 | 0.988 | 0.993 | 0.782 | 0.0 | |
| 449477742 | 2611 | PREDICTED: LOW QUALITY PROTEIN: translat | 0.992 | 0.999 | 0.775 | 0.0 | |
| 449470206 | 2611 | PREDICTED: translational activator GCN1- | 0.992 | 0.999 | 0.776 | 0.0 | |
| 255562017 | 2459 | Translational activator GCN1, putative [ | 0.928 | 0.993 | 0.804 | 0.0 | |
| 240254318 | 2610 | protein ILITYHIA [Arabidopsis thaliana] | 0.979 | 0.986 | 0.750 | 0.0 | |
| 357512395 | 2751 | Translational activator GCN1 [Medicago t | 0.993 | 0.949 | 0.740 | 0.0 | |
| 334183637 | 2696 | protein ILITYHIA [Arabidopsis thaliana] | 0.964 | 0.940 | 0.736 | 0.0 |
| >gi|296085156|emb|CBI28651.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4434 bits (11500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2183/2618 (83%), Positives = 2393/2618 (91%), Gaps = 9/2618 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSN--------HSAKRESANREVSGAGKKDIGKSTKKADKGKTAK 838
GRFRMY++QD D V SN HS ++E+A+REV+G GKKDIGKSTKKADKGKTAK
Sbjct: 785 GRFRMYDDQDDGDDVNSNLSVKRETNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAK 844
Query: 839 EEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQS 898
EEARELLL EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+S
Sbjct: 845 EEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRS 904
Query: 899 PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KE 957
P+V +VAYE +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N +
Sbjct: 905 PVVSEVAYETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERP 964
Query: 958 SLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPL 1017
SL LFERI++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+
Sbjct: 965 SLGLFERIISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPI 1024
Query: 1018 LPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMAC 1077
LPLPRLRM+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMAC
Sbjct: 1025 LPLPRLRMLSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMAC 1084
Query: 1078 LNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFK 1137
LNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFK
Sbjct: 1085 LNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFK 1144
Query: 1138 ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197
ALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGI
Sbjct: 1145 ALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGI 1204
Query: 1198 ALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFP 1257
ALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFP
Sbjct: 1205 ALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFP 1264
Query: 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQ 1317
IFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQ
Sbjct: 1265 IFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQ 1324
Query: 1318 RAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 1377
RAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+
Sbjct: 1325 RAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKF 1384
Query: 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437
GIA LREGLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR
Sbjct: 1385 GIATVLREGLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVR 1444
Query: 1438 EAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497
+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL
Sbjct: 1445 DGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1504
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
PKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSL
Sbjct: 1505 PKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSL 1564
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
DILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI
Sbjct: 1565 DILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1624
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677
GLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSG
Sbjct: 1625 GLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSG 1684
Query: 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737
AAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQ
Sbjct: 1685 AAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQ 1744
Query: 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1797
VLPAILDGLADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE
Sbjct: 1745 VLPAILDGLADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1804
Query: 1798 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857
LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS
Sbjct: 1805 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVS 1864
Query: 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917
+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLG
Sbjct: 1865 ISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLG 1924
Query: 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
ERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS
Sbjct: 1925 ERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1984
Query: 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037
EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVL
Sbjct: 1985 TPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVL 2044
Query: 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
PHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+A
Sbjct: 2045 PHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKA 2104
Query: 2098 AETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST 2157
AETV LVIDEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+T
Sbjct: 2105 AETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITT 2164
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
LIVLLSDSDS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+L
Sbjct: 2165 LIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVL 2224
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277
IPGFCLPKALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSEQ+LKEFVIPITGPLI
Sbjct: 2225 IPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSEQALKEFVIPITGPLI 2284
Query: 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD+TRTVRSSAALAL
Sbjct: 2285 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALAL 2344
Query: 2338 GKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 2397
GKLSALSTRVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGKSVS AV+ RVY +LK
Sbjct: 2345 GKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGKSVSVAVRTRVYVLLK 2404
Query: 2398 DLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFL 2457
D V+HDDD VR SAASILGI+SQ MEDGQL+DLLQEL +L SS SW+ARHGS+L ++ L
Sbjct: 2405 DFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLSWSARHGSILTISSML 2464
Query: 2458 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
RH+PS+I SP+F S++ LK +LKDEKFP+RE STKALGRLLLH++QS P+NT +D+
Sbjct: 2465 RHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLHRVQSDPSNTAAHLDV 2524
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPALAECLKDG+TPVRLAA
Sbjct: 2525 LSPMVSALQDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAA 2584
Query: 2578 ERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
ERCA+HAFQLT+G+E +Q AQKFITGLDARRLSKFPEH
Sbjct: 2585 ERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFPEH 2622
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476554|ref|XP_002267871.2| PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4415 bits (11450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2172/2610 (83%), Positives = 2381/2610 (91%), Gaps = 16/2610 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
+NHS ++E+A+REV+G GKKDIGKSTKKADKGKTAKEEARELLL
Sbjct: 785 E---------------TNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAKEEARELLL 829
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+SP+V +VAY
Sbjct: 830 REEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRSPVVSEVAY 889
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLFERI 965
E +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N + SL LFERI
Sbjct: 890 ETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERPSLGLFERI 949
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+LPLPRLRM
Sbjct: 950 ISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPILPLPRLRM 1009
Query: 1026 ISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIP 1085
+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMACLNAVKCIP
Sbjct: 1010 LSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMACLNAVKCIP 1069
Query: 1086 AVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYN 1145
AVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFKALSH NYN
Sbjct: 1070 AVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFKALSHINYN 1129
Query: 1146 VRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205
VRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGIALALHSAA
Sbjct: 1130 VRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGIALALHSAA 1189
Query: 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK 1265
DVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFPIFENYLNK
Sbjct: 1190 DVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFPIFENYLNK 1249
Query: 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 1325
K SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLS
Sbjct: 1250 KTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLS 1309
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
PLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+GIA LRE
Sbjct: 1310 PLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKFGIATVLRE 1369
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
GLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR+ AECAAR
Sbjct: 1370 GLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVRDGAECAAR 1429
Query: 1446 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT
Sbjct: 1430 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1489
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
EVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQTTF
Sbjct: 1490 EVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQTTF 1549
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
VN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK
Sbjct: 1550 VNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1609
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
KVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSGAAQGLSEV
Sbjct: 1610 KVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSGAAQGLSEV 1669
Query: 1686 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQVLPAILDG
Sbjct: 1670 LAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQVLPAILDG 1729
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK
Sbjct: 1730 LADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1789
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
VAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS+SVRQAAL
Sbjct: 1790 VAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVSISVRQAAL 1849
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSII 1925
HVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLGERVLP II
Sbjct: 1850 HVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLGERVLPLII 1909
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS EVRESA
Sbjct: 1910 PILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSTPEVRESA 1969
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
GLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV
Sbjct: 1970 GLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2029
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105
HLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+AAETV LVI
Sbjct: 2030 HLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKAAETVVLVI 2089
Query: 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165
DEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDS
Sbjct: 2090 DEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITTLIVLLSDS 2149
Query: 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 2225
DS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+LIPGFCLPK
Sbjct: 2150 DSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVLIPGFCLPK 2209
Query: 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285
ALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFP
Sbjct: 2210 ALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFP 2269
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345
WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSALST
Sbjct: 2270 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSALST 2329
Query: 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDD 2405
RVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGKSVS AV+ RVY +LKD V+HDDD
Sbjct: 2330 RVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGKSVSVAVRTRVYVLLKDFVHHDDD 2389
Query: 2406 HVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAIS 2465
VR SAASILGI+SQ MEDGQL+DLLQEL +L SS SW+ARHGS+L ++ LRH+PS+I
Sbjct: 2390 QVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLSWSARHGSILTISSMLRHSPSSIC 2449
Query: 2466 MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 2525
SP+F S++ LK +LKDEKFP+RE STKALGRLLLH++QS P+NT +D+L+ +VSAL
Sbjct: 2450 TSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLHRVQSDPSNTAAHLDVLSPMVSAL 2509
Query: 2526 HDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAF 2585
DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPALAECLKDG+TPVRLAAERCA+HAF
Sbjct: 2510 QDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAAERCALHAF 2569
Query: 2586 QLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
QLT+G+E +Q AQKFITGLDARRLSKFPEH
Sbjct: 2570 QLTKGTENVQAAQKFITGLDARRLSKFPEH 2599
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476556|ref|XP_003631859.1| PREDICTED: translational activator GCN1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4190 bits (10866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2072/2522 (82%), Positives = 2262/2522 (89%), Gaps = 76/2522 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+VSKNA CRVA QAS+LHIVMQ SFR RR
Sbjct: 1 MEKQSKFQSNIGCYRLLKWSCLLLSKSRFASVSKNAFCRVATVQASVLHIVMQGSFRVRR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+TFF LFSQS DIYK Y +ELKDARI YK SPELI LLLEF S+ P LFE+C+PIFL
Sbjct: 61 ACKRTFFCLFSQSLDIYKIYIEELKDARISYKDSPELIWLLLEFSSRKPLLFEQCKPIFL 120
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
DIYVKAVLNA+E+P KGLSE+F PLFTHM EDF+SIV+P++IKMLKRNPEI+LES+G+L
Sbjct: 121 DIYVKAVLNAREEPAKGLSEAFHPLFTHMVHEDFKSIVVPSAIKMLKRNPEIVLESVGVL 180
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LKSVNLDLSKYA EILSVVL+Q RHADEGR+ GAL+I+ CLS+KSSNPDA+EAMF +IKA
Sbjct: 181 LKSVNLDLSKYAIEILSVVLAQARHADEGRRHGALSIVCCLSQKSSNPDAIEAMFNSIKA 240
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRLAFPYQR+GM+NALQELSNA EGKYLNSLS TIC FLLSCYKD+GNEEVKLA
Sbjct: 241 VIGGSEGRLAFPYQRVGMINALQELSNAPEGKYLNSLSPTICGFLLSCYKDDGNEEVKLA 300
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
IL A+ASW RSAD +Q D++SF SGLKEKE LRRGHLRCLR I NTDA++ VSSLLG
Sbjct: 301 ILPALASWVARSADALQRDVVSFLVSGLKEKEGLRRGHLRCLRFIFKNTDAIILVSSLLG 360
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PL+QLVKTGFTKA QRLDGIYA L+V KIAA DIKAEETV KEKLWSL+SQNEPSLVP +
Sbjct: 361 PLVQLVKTGFTKAAQRLDGIYALLLVAKIAAVDIKAEETVAKEKLWSLISQNEPSLVPIS 420
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +DCMACV+LL VL+VEH HRVLETFS +L+QL+L CHPSWDIR+ A+D T
Sbjct: 421 MASKLSTEDCMACVDLLEVLIVEHLHRVLETFSKNVLVQLILFLVCHPSWDIRRAAYDNT 480
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
+KII++ P L+EALL EF+NFLS+VGEKI + KTSDT++ +D+QVPFLPSVEV VK L+V
Sbjct: 481 KKIISAAPKLAEALLSEFTNFLSVVGEKIQLLKTSDTENSLDAQVPFLPSVEVLVKALIV 540
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S ALA PSA ++IFCSHHP IVGTGKR+AVW
Sbjct: 541 ISSEALAAVPSAIMQIIFCSHHPCIVGTGKRNAVW------------------------- 575
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
+ LLG LMS N LEQ+AAINSLSTLMS+ PKDTY+ FEKH + PD HD++SEND
Sbjct: 576 -RGLLGPTALMSPNHLEQEAAINSLSTLMSVIPKDTYIEFEKHFSNFPDRQSHDTVSEND 634
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
IQ+F+TPEGMLSSEQGVY+AE VA KN +Q+KGRFR + +NHS ++E+A+R
Sbjct: 635 IQIFHTPEGMLSSEQGVYVAESVATKNMRQAKGRFR----------IETNHSGRKETASR 684
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
EV+G GKKDIGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMA
Sbjct: 685 EVTGVGKKDIGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMA 744
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
IANPVFAHS+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLI
Sbjct: 745 IANPVFAHSELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLI 804
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VTEEVHV +LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFP
Sbjct: 805 VTEEVHVLLELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFP----- 859
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
VLYH LGVVP+YQA+IG ALNELCLG
Sbjct: 860 ----------------------------------VLYHALGVVPTYQASIGPALNELCLG 885
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
LQ +EVA AL+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSV
Sbjct: 886 LQSDEVAPALYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSV 945
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AE AEDIWDR GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLF
Sbjct: 946 AELAEDIWDRCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLF 1005
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD+G G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1006 SLYIRDVGFGEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1065
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGI+IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1066 GRMINAGILIIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAK 1125
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYG
Sbjct: 1126 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYG 1185
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRL
Sbjct: 1186 ERRGAAFGLAGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRL 1245
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1246 FEPYVIQMLPLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1305
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNP
Sbjct: 1306 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNP 1365
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI++LVPTLLMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1366 EISALVPTLLMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETK 1425
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEE
Sbjct: 1426 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEE 1485
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLVSWLLD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVR
Sbjct: 1486 NFPDLVSWLLDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVR 1545
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFKYLPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSL
Sbjct: 1546 DGYLTLFKYLPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSL 1605
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI
Sbjct: 1606 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1665
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IE LGRDKRNEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+S
Sbjct: 1666 IEGLGRDKRNEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITS 1725
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMAS
Sbjct: 1726 LASSSSERRQVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMAS 1785
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLLSFMDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LE
Sbjct: 1786 AGKSQLLSFMDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLE 1845
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG
Sbjct: 1846 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLG 1905
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
+LPALLSAM DDD DVQ LAK+AAETV LVIDEEGVE L+SELLKGVGDNQASIRRSS+
Sbjct: 1906 IVLPALLSAMSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSS 1965
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
+LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDSDS TVA AWEALSRV SVPKEV PSYI
Sbjct: 1966 FLIGYFFKNSKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYI 2025
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGL 2253
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPLLP+FLQGLISGSAELREQAA GL
Sbjct: 2026 KIVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGL 2085
Query: 2254 GELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313
GELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ
Sbjct: 2086 GELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2145
Query: 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
LQTTFIKCLQD+TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD G+REAILTAL
Sbjct: 2146 LQTTFIKCLQDNTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTAL 2205
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433
KGVL+HAGKSVS AV+ RVY +LKD V+HDDD VR SAASILGI+SQ MEDGQL+DLLQE
Sbjct: 2206 KGVLQHAGKSVSVAVRTRVYVLLKDFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQE 2265
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
L +L SS SW+ARHGS+L ++ LRH+PS+I SP+F S++ LK +LKDEKFP+RE ST
Sbjct: 2266 LSSLDSSLSWSARHGSILTISSMLRHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETST 2325
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
KALGRLLLH++QS P+NT +D+L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M
Sbjct: 2326 KALGRLLLHRVQSDPSNTAAHLDVLSPMVSALQDDSSEVRRRALSALKAVAKANPSALMT 2385
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFP 2613
H+ +FGPALAECLKDG+TPVRLAAERCA+HAFQLT+G+E +Q AQKFITGLDARRLSKFP
Sbjct: 2386 HITIFGPALAECLKDGNTPVRLAAERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFP 2445
Query: 2614 EH 2615
EH
Sbjct: 2446 EH 2447
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506010|ref|XP_003521781.1| PREDICTED: translational activator GCN1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 4095 bits (10621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2046/2614 (78%), Positives = 2320/2614 (88%), Gaps = 16/2614 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT--EMSPEIASFLVDIIFKTFSVY 61
A+S +L+S++ VSTSST R RIFR ++ + + ++ EMS E+AS L DIIF+T ++Y
Sbjct: 3 AESLQSLVSLSELVSTSSTNHRVRIFRREIPAFLNSSTSEMSTELASLLTDIIFRTVAIY 62
Query: 62 DDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKS 121
DD SRKAVDDVI K LG FMKTFA ALVQ MEKQSKFQSHVG YRLL WSCLLLSKS
Sbjct: 63 DDLRSRKAVDDVIVKALGGTVFMKTFAGALVQNMEKQSKFQSHVGGYRLLSWSCLLLSKS 122
Query: 122 QFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDA 181
+FA VSKNALCRVAAAQASLL +V++RSFRERRAC++ FFHLFSQ PDIYK Y +EL++
Sbjct: 123 KFAAVSKNALCRVAAAQASLLSLVLKRSFRERRACRKKFFHLFSQLPDIYKVYMEELRNG 182
Query: 182 RIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFT 241
RIP+K SPEL+ LLLEF S+SPSLF + + FLDIYV A+L+AKEKP K L+E+F PL+
Sbjct: 183 RIPFKDSPELLMLLLEFSSRSPSLFGEFKVTFLDIYVNAILSAKEKPGKSLTEAFHPLYL 242
Query: 242 HMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHAD 301
MS EDFQSIV+P+S+KMLKRNPEI+LES+GILLKSVNLDLSKYA EILSVVL+Q RHAD
Sbjct: 243 QMSHEDFQSIVIPSSVKMLKRNPEIVLESVGILLKSVNLDLSKYAAEILSVVLAQARHAD 302
Query: 302 EGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSN 361
EGR+ GAL I+ LS+KSSNPDAL+ MF AIKAVI GSEGRLAFPYQR+GMVNA+QELS
Sbjct: 303 EGRRDGALAIVQSLSQKSSNPDALDTMFNAIKAVIKGSEGRLAFPYQRVGMVNAIQELSY 362
Query: 362 ATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASG 421
A +GKYL SLS TIC FLLS YKD+GNEEVK+ ILSA+ASWA RS DIIQ L+SF ASG
Sbjct: 363 APDGKYLISLSRTICDFLLSYYKDDGNEEVKIVILSAIASWAVRSTDIIQESLVSFLASG 422
Query: 422 LKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVG 481
LKEKE LR+G LR L IC N DAVL++ L+G L+QLVKTGFTKAVQRLDGIYA L+V
Sbjct: 423 LKEKETLRKGFLRSLHAICKNEDAVLKMLPLIGTLMQLVKTGFTKAVQRLDGIYALLLVA 482
Query: 482 KIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHR 541
KIAA DIKAEET+ KEK+W+L+SQNEPS+VP +M SKLS++D M CV+LL VLLVEH
Sbjct: 483 KIAAVDIKAEETLVKEKIWALISQNEPSVVPISMASKLSIEDNMTCVDLLEVLLVEHLQC 542
Query: 542 VLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGE 601
L FSV+L+LQL++ F CHP WDIR+MA+D RKII S P LS+ LLLEFS +L+L+GE
Sbjct: 543 TLSNFSVRLMLQLMIFFMCHPRWDIRRMAYDVARKIIPSAPQLSKDLLLEFSKYLTLIGE 602
Query: 602 KIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVG 661
K + KTSD+D +D QVPF+PSVEV VK LL+++ AL P + R+I CSHHP +VG
Sbjct: 603 KHLALKTSDSDISLDPQVPFIPSVEVLVKALLIMSPAALKHAPESFFRIILCSHHPCVVG 662
Query: 662 TGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLST 721
K DAVW+RL KCL+ GF VI+++SA+VGN +VLLG +GL SAN LEQQAAI SL
Sbjct: 663 GAKIDAVWKRLSKCLQTQGFVVIDVISANVGNFLQVLLGPMGLKSANPLEQQAAILSLCN 722
Query: 722 LMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
LMSI P DTY+ FEK+L +LP+ + HD+L ENDIQ+F TPEGMLS+EQGVY+AE V AKN
Sbjct: 723 LMSIIPGDTYIEFEKNLLNLPERFAHDTLLENDIQIFLTPEGMLSTEQGVYVAESVTAKN 782
Query: 782 TKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA 841
TKQ DH SNHS +R+ +RE +GAGKKD GK+ KKADKGKTAKEEA
Sbjct: 783 TKQ--------------DHTRSNHSVRRDQPSREAAGAGKKDTGKAAKKADKGKTAKEEA 828
Query: 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIV 901
RELLL EEAS+R++V+ +Q+NLSLML LG+MAIAN VFAHS+LPS+VKFV+PL++SPIV
Sbjct: 829 RELLLKEEASVRDRVREIQKNLSLMLRTLGDMAIANSVFAHSRLPSMVKFVEPLMRSPIV 888
Query: 902 GDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCL 961
D A+E +VKL+RCTA PLC+WALDI+TALRLIVT+EVH+ DL+PSV E N+ L
Sbjct: 889 SDEAFETMVKLARCTAPPLCDWALDISTALRLIVTDEVHLLLDLVPSVTEEEFNERPHGL 948
Query: 962 FERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLP 1021
FERI++GL++SCKSG LPVDSF+F+FPIIERILL K+T HDDVL++ Y H+DP LPLP
Sbjct: 949 FERILDGLSISCKSGALPVDSFSFIFPIIERILLCSKKTKFHDDVLRIFYLHLDPHLPLP 1008
Query: 1022 RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAV 1081
R+RM+SVLYHVLGVVP+YQA+IG ALNEL LGLQP EVASAL+GVY KDVHVRMACLNAV
Sbjct: 1009 RIRMLSVLYHVLGVVPAYQASIGPALNELSLGLQPAEVASALYGVYAKDVHVRMACLNAV 1068
Query: 1082 KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSH 1141
KCIPAV+ RSLPEN+EV+TS+WIA+HDPEKSVA+ AEDIWD YG+DFGTD+SGL+KALSH
Sbjct: 1069 KCIPAVANRSLPENVEVATSIWIALHDPEKSVAQVAEDIWDHYGFDFGTDFSGLYKALSH 1128
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
NYNVR+AAAEALA ALDE+PDSIQ SLSTLFSLYI D+G+G DNVDAGWLGRQGIALAL
Sbjct: 1129 INYNVRVAAAEALAAALDEHPDSIQESLSTLFSLYILDMGVGDDNVDAGWLGRQGIALAL 1188
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
H+AAD+LRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDK+G+DNVSLLFPIFEN
Sbjct: 1189 HAAADILRTKDLPVVMTFLISRALADLNADVRGRMINAGILIIDKNGKDNVSLLFPIFEN 1248
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
YLNK A DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS
Sbjct: 1249 YLNKTAPDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1308
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+CLSPLMQS QD+A L +RL+DQ+MKS+KYGERRGAAFGLAG+VKGFGIS LKKY I
Sbjct: 1309 ACLSPLMQSKQDDAAALFNRLMDQMMKSEKYGERRGAAFGLAGLVKGFGISCLKKYRIVI 1368
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAE 1441
TL+E LA+RNSAK REGALL FECLCE LGR+FEPYVIQMLPLLLV+FSDQV AVREAAE
Sbjct: 1369 TLQESLAERNSAKSREGALLGFECLCETLGRIFEPYVIQMLPLLLVSFSDQVNAVREAAE 1428
Query: 1442 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV
Sbjct: 1429 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1488
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
PKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLL GL+DPN+HTKYSLDILL
Sbjct: 1489 PKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLKGLSDPNEHTKYSLDILL 1548
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
QTTFVN++DAPSLALLVPIVHRGLRERSA+TKK+AAQIVGNMCSLVTEPKDMIPYIGLLL
Sbjct: 1549 QTTFVNSIDAPSLALLVPIVHRGLRERSADTKKRAAQIVGNMCSLVTEPKDMIPYIGLLL 1608
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
PEVKKVLVDPIPEVRSVAARAIGSLI GMGEENFPDLV WL D LKSDNSNVERSGAAQG
Sbjct: 1609 PEVKKVLVDPIPEVRSVAARAIGSLIGGMGEENFPDLVPWLFDTLKSDNSNVERSGAAQG 1668
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
LSEVLAALG +FEH+LPDIIR+CSHQ+ASVRDGYLTLFKYLPRSLGVQFQNYL QVLPA
Sbjct: 1669 LSEVLAALGIDFFEHVLPDIIRHCSHQKASVRDGYLTLFKYLPRSLGVQFQNYLPQVLPA 1728
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND+WRIRQSSVELLGD
Sbjct: 1729 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDSWRIRQSSVELLGD 1788
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
LLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIE+LGRDKRNEVLAALYMVR+DVSLSVR
Sbjct: 1789 LLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEILGRDKRNEVLAALYMVRADVSLSVR 1848
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
QAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLASSSSERRQVAGR+LGELVRKLGERVL
Sbjct: 1849 QAALHVWKTIVANTPKTLREIMPVLMDTLITSLASSSSERRQVAGRSLGELVRKLGERVL 1908
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
P IIPILS+GL DP++SRRQGVC+GLSEVMASAGKSQLL+FM+ELIPTIRTALCDS+ EV
Sbjct: 1909 PLIIPILSQGLNDPNSSRRQGVCVGLSEVMASAGKSQLLTFMNELIPTIRTALCDSVSEV 1968
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
RESAGLAFSTL+KSAGM AIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPHIL
Sbjct: 1969 RESAGLAFSTLYKSAGMLAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTSAVLPHIL 2028
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 2101
PKLVH PLSAFNAHALGALAEVAGPGL+FHL T+LP LLSAMGDDD +VQ+LAKEA+ETV
Sbjct: 2029 PKLVHPPLSAFNAHALGALAEVAGPGLDFHLCTVLPPLLSAMGDDDKEVQTLAKEASETV 2088
Query: 2102 TLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161
LVIDEEG+E L+SEL+KGV D+QA++RRSS+YLIGYF+KNSKLYLVDEAPNMISTLI+L
Sbjct: 2089 VLVIDEEGIEPLMSELVKGVNDSQAAVRRSSSYLIGYFFKNSKLYLVDEAPNMISTLIIL 2148
Query: 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221
LSDSDS+TV AWEALSRV+ SVPKEV PSYIK++RDA+STSRDKERRKKKGGPILIPGF
Sbjct: 2149 LSDSDSSTVTVAWEALSRVIISVPKEVLPSYIKLVRDAVSTSRDKERRKKKGGPILIPGF 2208
Query: 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
CLPKALQP+LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG
Sbjct: 2209 CLPKALQPILPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2268
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341
DRFPWQVKSAILSTL+ +I+KGGI+LKPFLPQLQTTF+KCLQDSTRTVRSSAALALGKLS
Sbjct: 2269 DRFPWQVKSAILSTLTTMIKKGGISLKPFLPQLQTTFVKCLQDSTRTVRSSAALALGKLS 2328
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
LSTRVDPLV DLLSSLQ SD G+ EAILTALKGVLKHAGK+VSSAV+ R YSVLK+L++
Sbjct: 2329 GLSTRVDPLVSDLLSSLQGSDGGVSEAILTALKGVLKHAGKNVSSAVRTRFYSVLKELIH 2388
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNP 2461
DD+ VR A+SILGI++Q +ED QL +L+QEL +LA+SPSW RHGS+L ++ +NP
Sbjct: 2389 DDDEIVRTYASSILGILTQYLEDVQLTELIQELSSLANSPSWPPRHGSILTISSLFHYNP 2448
Query: 2462 SAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASV 2521
+ I S LF +I+D L+ +LKDEKFPLRE STKALGRLLL++ Q P++T + D+L+ +
Sbjct: 2449 ATICSSSLFSTIVDCLRDTLKDEKFPLRETSTKALGRLLLYRSQVDPSDTLLYKDVLSLL 2508
Query: 2522 VSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCA 2581
VS+ HD+SSEVRRRALSA+K+VAKANPSAIM H + GPALAEC+KDG+TPVRLAAERCA
Sbjct: 2509 VSSTHDESSEVRRRALSAIKAVAKANPSAIMSHSTIVGPALAECMKDGNTPVRLAAERCA 2568
Query: 2582 VHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
+HAFQLT+GSE +Q AQK+ITGLDARRLSKFPE+
Sbjct: 2569 LHAFQLTKGSENVQAAQKYITGLDARRLSKFPEY 2602
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477742|ref|XP_004155110.1| PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4073 bits (10562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2038/2627 (77%), Positives = 2296/2627 (87%), Gaps = 18/2627 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIFR+ + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFRNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS KYGERRG AFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSXKYGERRGVAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKK AQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKXAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQATIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
LPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSEQ LKEFVI ITGPLIRIIGD
Sbjct: 2209 LPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSEQVLKEFVIQITGPLIRIIGD 2268
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342
RFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSA
Sbjct: 2269 RFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSA 2328
Query: 2343 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
LSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK+VSS V+ RVY++LKDL+
Sbjct: 2329 LSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGKTVSSGVRTRVYTLLKDLIRQ 2388
Query: 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS SW ARHGS+L ++ LRH PS
Sbjct: 2389 EDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-SWHARHGSMLTISSILRHKPS 2447
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
A+ +F SIL LK++LKDEKFP+RE STKALGRLLL+QIQ A +DIL S+V
Sbjct: 2448 AVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLYQIQRSSATN---LDILTSLV 2504
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582
SAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPALAECL+DGSTPVRLAAERCA+
Sbjct: 2505 SALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPALAECLRDGSTPVRLAAERCAL 2564
Query: 2583 HAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSEDSENDTASG 2629
H FQLT+GSE +Q AQKFITGL+ARRLSK PE SDDSEDSE ++ASG
Sbjct: 2565 HCFQLTKGSENVQAAQKFITGLEARRLSKLPEQSDDSEDSEAESASG 2611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470206|ref|XP_004152809.1| PREDICTED: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4072 bits (10560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2039/2627 (77%), Positives = 2297/2627 (87%), Gaps = 18/2627 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIF + + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFLNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS+KYGER GAAFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSEKYGERCGAAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKKAAQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKAAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQAAIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
LPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSEQ LKEFVI ITGPLIRIIGD
Sbjct: 2209 LPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSEQVLKEFVIQITGPLIRIIGD 2268
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342
RFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSA
Sbjct: 2269 RFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSA 2328
Query: 2343 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
LSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK+VSS V+ RVY++LKDL+
Sbjct: 2329 LSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGKTVSSGVRTRVYTLLKDLIRQ 2388
Query: 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS SW ARHGS+L ++ LRH PS
Sbjct: 2389 EDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-SWHARHGSMLTISSILRHKPS 2447
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
A+ +F SIL LK++LKDEKFP+RE STKALGRLLLHQIQ A +DIL S+V
Sbjct: 2448 AVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLHQIQRSSATN---LDILTSLV 2504
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582
SAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPALAECL+DGSTPVRLAAERCA+
Sbjct: 2505 SALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPALAECLRDGSTPVRLAAERCAL 2564
Query: 2583 HAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSEDSENDTASG 2629
H FQLT+GSE +Q AQKFITGL+ARRLSK PE SDDSEDSE ++ASG
Sbjct: 2565 HCFQLTKGSENVQAAQKFITGLEARRLSKLPEQSDDSEDSEAESASG 2611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562017|ref|XP_002522017.1| Translational activator GCN1, putative [Ricinus communis] gi|223538821|gb|EEF40421.1| Translational activator GCN1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 4070 bits (10556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2028/2520 (80%), Positives = 2223/2520 (88%), Gaps = 78/2520 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKF SHVGCYRLL WSCLLL +SQFA VSKNA+CRVAAAQAS L V+ RSFRERR
Sbjct: 1 MEKQSKFHSHVGCYRLLNWSCLLLCQSQFAAVSKNAVCRVAAAQASTLSTVIHRSFRERR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+ FFHLFSQSP IYK YT+E KDARIPYK SPEL+ LLLEF S + S FE+ +P+FL
Sbjct: 61 ACKRLFFHLFSQSPHIYKIYTEEFKDARIPYKDSPELMWLLLEF-SIASSSFEQVKPVFL 119
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
D YVKA+LNAKEKP LSESF PLF H+S EDFQ++V+P++ KMLKRNPEI+LES+GIL
Sbjct: 120 DTYVKAILNAKEKPATRLSESFQPLFMHLSHEDFQNVVVPSAAKMLKRNPEIVLESVGIL 179
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LK V LDLSKYA+EILSVVL Q RH DE R+ AL I+ CLS+KSSNPDALEAMF A+KA
Sbjct: 180 LKFVKLDLSKYASEILSVVLPQARHTDESRRLTALAIVRCLSQKSSNPDALEAMFTAVKA 239
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRL FPYQR+GM NALQELS A EGKYL+ LS TIC FLLSCYK+EGNEEVKLA
Sbjct: 240 VIGGSEGRLQFPYQRVGMFNALQELSYAPEGKYLSGLSCTICSFLLSCYKNEGNEEVKLA 299
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
+LSA+ASWA RSAD +Q D++SF ASGLKEKE LRRGHLRCLRVIC N DA+LQ+SSLLG
Sbjct: 300 VLSAIASWAARSADAVQPDIVSFIASGLKEKEVLRRGHLRCLRVICKNNDAILQISSLLG 359
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PLIQLVKTGFTKAVQRLDG+YA LI GKIA+ADIKAEET+ KEK+WSL++QNEPSLV +
Sbjct: 360 PLIQLVKTGFTKAVQRLDGVYALLIAGKIASADIKAEETLAKEKIWSLIAQNEPSLVQIS 419
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +D MACV+LL VLL+EHS R+LE FSV+LLLQL++ CHP+W++RKM+HD+T
Sbjct: 420 MASKLSPEDSMACVDLLEVLLIEHSRRMLEAFSVRLLLQLIVFLLCHPNWEVRKMSHDST 479
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
R+IITSVP LSE L+ EF+NFLS V EK+ TSDTD +D QVPFLPSVEV VK L+V
Sbjct: 480 RRIITSVPQLSEVLITEFTNFLSSVAEKVFSLNTSDTDTSLDPQVPFLPSVEVLVKALIV 539
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S LA PS S +++FCSHHP I+GT +DAVW
Sbjct: 540 ISSATLATSPSISTKILFCSHHPCIIGTANKDAVW------------------------- 574
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
K LLG +GLMS N+ EQQAAINSLSTLMSITP DTY+ FEKHL +L D Y HD LSEND
Sbjct: 575 -KGLLGPMGLMSLNVFEQQAAINSLSTLMSITPSDTYMEFEKHLNNLEDRYSHDMLSEND 633
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
I++F+TPEGMLSSEQGVY+AE +A+KNT+Q+KGRFR+ SNHSAKRE R
Sbjct: 634 IRIFHTPEGMLSSEQGVYVAESIASKNTRQAKGRFRI-----------SNHSAKREPTGR 682
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
E +G G+KD GK KK DKGKTAKEEARELLL EE SIREKVQ VQ NLSL+L ALGEMA
Sbjct: 683 EATGVGRKDAGKLAKKTDKGKTAKEEARELLLKEEESIREKVQDVQNNLSLILRALGEMA 742
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++NPVFAHSQLPSLV+FVD LL+SPIV DVA+E LVKL+RCTA PLCNWALDIATAL LI
Sbjct: 743 VSNPVFAHSQLPSLVRFVDSLLRSPIVSDVAFETLVKLARCTAPPLCNWALDIATALCLI 802
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
T EV V +LIP+VG+ N + SL LFERI+ GL+VSCKSGPLPVDSFTFVFP
Sbjct: 803 ATAEVSVLPNLIPTVGKGETNERPSLGLFERIIAGLSVSCKSGPLPVDSFTFVFP----- 857
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
LYHVLGVVP+YQA++G+ALNELCLG
Sbjct: 858 ----------------------------------ALYHVLGVVPAYQASVGAALNELCLG 883
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ +EVASAL+GVY KDVHVRMACLNA+KCIPAVS+RSLP+N+E++TS+WIA+HDPEK +
Sbjct: 884 LKADEVASALYGVYAKDVHVRMACLNAIKCIPAVSSRSLPQNVEIATSIWIALHDPEKLI 943
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AEAAEDIWDRYG DFGTDYSGLFKALSH NYNVR+A AEALA ALDE PDSIQ SLSTLF
Sbjct: 944 AEAAEDIWDRYGCDFGTDYSGLFKALSHINYNVRIATAEALAAALDENPDSIQESLSTLF 1003
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD G DNVDAGW+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1004 SLYIRDATFGEDNVDAGWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1063
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGIMIIDKHG++NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1064 GRMINAGIMIIDKHGKENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1123
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A +LVSR+LDQLMKSDKYG
Sbjct: 1124 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDAASLVSRVLDQLMKSDKYG 1183
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAG+VKGFGISSLK YGI A LREGL DRNSAK REGALLAFECLCEKLG+L
Sbjct: 1184 ERRGAAFGLAGIVKGFGISSLKNYGIIAALREGLVDRNSAKSREGALLAFECLCEKLGKL 1243
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1244 FEPYVIQMLPLLLVSFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1303
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAP+QLSQCLP IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP
Sbjct: 1304 TKQSSVQLLGAMAYCAPRQLSQCLPTIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1363
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI+SLVPTLLM LTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1364 EISSLVPTLLMALTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETK 1423
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE
Sbjct: 1424 KKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1483
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLV WL D LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPD+IRNCSHQRASVR
Sbjct: 1484 NFPDLVPWLFDTLKSDTSNVERSGAAQGLSEVLAALGTKYFEHVLPDLIRNCSHQRASVR 1543
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFK+LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL
Sbjct: 1544 DGYLTLFKFLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1603
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK+LLEGGSDDEGASTEAHGRAI
Sbjct: 1604 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKSLLEGGSDDEGASTEAHGRAI 1663
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IEVLGR+KRNEVLAALYMVR+D+SLSVRQAALHVWKTIVANTPKTLKEIMP+LMNTLISS
Sbjct: 1664 IEVLGREKRNEVLAALYMVRTDMSLSVRQAALHVWKTIVANTPKTLKEIMPILMNTLISS 1723
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGRALGELVRKLGERVLP IIPILS+GL++P ASRRQGVCIGLSEVMAS
Sbjct: 1724 LASSSSERRQVAGRALGELVRKLGERVLPLIIPILSQGLRNPDASRRQGVCIGLSEVMAS 1783
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLL+FMDELIPTIRTALCDS+LEVRESAGLAFSTL+KSAGMQAIDEIVPTLLHALE
Sbjct: 1784 AGKSQLLNFMDELIPTIRTALCDSMLEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALE 1843
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DD+TSDTALDGLKQILSVRT AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN HL
Sbjct: 1844 DDETSDTALDGLKQILSVRTAAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNVHLS 1903
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
T+LPALLSAMG +D DVQ+LAKEAAETV LVIDEEGVE L++ELLKGVGD+ AS+RRSS+
Sbjct: 1904 TVLPALLSAMGGEDKDVQTLAKEAAETVVLVIDEEGVEYLIAELLKGVGDSMASVRRSSS 1963
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
YLIGYF+KNSKLYL DEAPNMISTLIVLLSD DS TVA AWEALSRVV+SVPKEV PSY+
Sbjct: 1964 YLIGYFFKNSKLYLADEAPNMISTLIVLLSDMDSATVAIAWEALSRVVSSVPKEVLPSYL 2023
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGL 2253
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPL+PIFLQGLISGSA+LREQAALGL
Sbjct: 2024 KLVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLVPIFLQGLISGSADLREQAALGL 2083
Query: 2254 GELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313
GELIEVTSEQ+LK+FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG+ALKPFLPQ
Sbjct: 2084 GELIEVTSEQALKDFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGMALKPFLPQ 2143
Query: 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
LQTTFIKCLQD+TRTVR+SAALALGKLSALSTRVDPLV DLLSSLQ SDAG+REAIL AL
Sbjct: 2144 LQTTFIKCLQDNTRTVRTSAALALGKLSALSTRVDPLVSDLLSSLQASDAGVREAILMAL 2203
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433
KGVLK+AGKSVS+AVKIRV+S L DL++HDDD VR+S+ASILGI SQ ME QL DLLQ+
Sbjct: 2204 KGVLKYAGKSVSNAVKIRVFSQLNDLIHHDDDQVRISSASILGITSQYMEAAQLIDLLQQ 2263
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
L N ASSPSW +RHGSVL ++ LRHNPS + S F SI+D LK LKDEKFPLR+ S
Sbjct: 2264 LSNSASSPSWVSRHGSVLTISSLLRHNPSLVITSAEFPSIIDCLKDGLKDEKFPLRDTSI 2323
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
+ALGRLLLHQI S + T+ VDIL+S VSAL DDSSEVRRRALSALK+VAKA+P I
Sbjct: 2324 EALGRLLLHQIYSDQSKTSSYVDILSSTVSALRDDSSEVRRRALSALKAVAKASPPFITT 2383
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFP 2613
HV++ GPALAECL+D STPVRLAAERCAVH FQLT+G+E IQ +QKFITGLDARRLSK+P
Sbjct: 2384 HVSIIGPALAECLRDSSTPVRLAAERCAVHTFQLTKGTENIQASQKFITGLDARRLSKYP 2443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254318|ref|NP_176659.6| protein ILITYHIA [Arabidopsis thaliana] gi|332196168|gb|AEE34289.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3983 bits (10330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1946/2592 (75%), Positives = 2261/2592 (87%), Gaps = 18/2592 (0%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 23 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 82
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 83 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 142
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 143 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 202
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 203 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 262
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 263 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 322
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 323 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 382
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 383 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 442
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 443 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 502
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 503 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 562
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 563 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 622
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 623 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 682
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 683 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 742
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 743 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 787
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 788 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 847
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 848 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 907
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 908 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 965
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FPI+ERILLS KRT LHDDVLQ+LY H+DP+LPLPRLRMISVLYHVLGVVP+YQA++
Sbjct: 966 TFIFPILERILLSSKRTKLHDDVLQILYMHLDPMLPLPRLRMISVLYHVLGVVPAYQASV 1025
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1026 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1085
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1086 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1145
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1146 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1205
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1206 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1265
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1266 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1325
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1326 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1385
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1386 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1445
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEVLTDTHPKVQSAGQ AL
Sbjct: 1446 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVLTDTHPKVQSAGQLAL 1505
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
QQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALLVPIVHR
Sbjct: 1506 QQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALLVPIVHR 1565
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
GLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+
Sbjct: 1566 GLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAV 1625
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+ILPD+IR
Sbjct: 1626 GSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENILPDLIR 1685
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAALGAGHV
Sbjct: 1686 HCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAALGAGHV 1745
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823
LVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG
Sbjct: 1746 LVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1805
Query: 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883
ASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTLKEIM
Sbjct: 1806 ASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPKTLKEIM 1865
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGV 1943
P+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP +RQGV
Sbjct: 1866 PILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDVDKRQGV 1925
Query: 1944 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003
CIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG+QA+DE
Sbjct: 1926 CIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAGLQAMDE 1985
Query: 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV 2063
I+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHALGALAEV
Sbjct: 1986 IIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHALGALAEV 2045
Query: 2064 AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
AG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SELLKGV D
Sbjct: 2046 AGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSELLKGVSD 2105
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL+RV+ S
Sbjct: 2106 SQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEALARVIGS 2165
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
VPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQGLISGSA
Sbjct: 2166 VPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQGLISGSA 2225
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
ELREQAA+GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAIL+TL I+I++G
Sbjct: 2226 ELREQAAIGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLIILIQRG 2285
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363
G+ALKPFLPQLQTTF+KCLQDSTRT+RSSAA+ALGKLSALSTR+DPLVGDL++S Q +D+
Sbjct: 2286 GMALKPFLPQLQTTFVKCLQDSTRTIRSSAAVALGKLSALSTRIDPLVGDLMTSFQAADS 2345
Query: 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423
G+REAIL+A++GV+KHAGKS+ AV++R++ +LKDL++H+DD VR+SA S+LG++SQ +E
Sbjct: 2346 GVREAILSAMRGVIKHAGKSIGPAVRVRIFDLLKDLMHHEDDQVRISATSMLGVLSQYLE 2405
Query: 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD 2483
QL+ LLQE+ +L++S +W ARHGSVL ++ L+HNPS I S LF S+L+ LKSSLKD
Sbjct: 2406 AAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFSSMLNSLKSSLKD 2465
Query: 2484 EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSV 2543
EKFPLRE+STKALGRLLL Q+ + P+NT VV+D+L+S+VSALHDDSSEVRRRALS+LK+
Sbjct: 2466 EKFPLRESSTKALGRLLLKQLATDPSNTKVVIDVLSSIVSALHDDSSEVRRRALSSLKAF 2525
Query: 2544 AKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITG 2603
AK NPSA M ++++ GP LAECLKDG+TPVRLAAERCA+H FQLT+G+E +Q AQK+ITG
Sbjct: 2526 AKDNPSATMANISVIGPPLAECLKDGNTPVRLAAERCALHVFQLTKGAENVQAAQKYITG 2585
Query: 2604 LDARRLSKFPEH 2615
LDARRLSKFPE
Sbjct: 2586 LDARRLSKFPEQ 2597
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512395|ref|XP_003626486.1| Translational activator GCN1 [Medicago truncatula] gi|355501501|gb|AES82704.1| Translational activator GCN1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3972 bits (10301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2024/2735 (74%), Positives = 2311/2735 (84%), Gaps = 124/2735 (4%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT----EMSPEIASFLVDIIFKTFS 59
A+S +L+S++ VSTSST +R RIF+ +V + + ++ EMS E+AS L DIIF+T +
Sbjct: 2 AESLQSLVSLSELVSTSSTNQRLRIFQREVPAFLNSSSTSDEMSTELASLLTDIIFRTVA 61
Query: 60 VYDDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLS 119
+YDDR SRKAVDDVI K L FMKTFAAALVQ+MEKQ K QSHVGCYRLL WSCLLLS
Sbjct: 62 IYDDRRSRKAVDDVIVKSLSGTVFMKTFAAALVQSMEKQLKSQSHVGCYRLLSWSCLLLS 121
Query: 120 KSQFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELK 179
KS+F+TVSKNALCRVA+ QASLL++V +RSFRERRACK+ FHLF + PDIYK Y E+K
Sbjct: 122 KSKFSTVSKNALCRVASGQASLLNLVWRRSFRERRACKKKIFHLFKELPDIYKVYVQEVK 181
Query: 180 DARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPL 239
+ IPYK SPEL+ LLLEF ++S SLF + + FLDIYV A+L+AK KP K L E+F PL
Sbjct: 182 NGSIPYKDSPELLLLLLEFSTRSSSLFGEFKSAFLDIYVNAILSAKAKPGKSLIEAFHPL 241
Query: 240 FTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRH 299
+ MS EDF +IVLPA++KMLKRNPEI+LES+GILLKSV LDLSKYA EILSVVL Q RH
Sbjct: 242 YLQMSHEDFGTIVLPAAVKMLKRNPEIVLESVGILLKSVKLDLSKYAAEILSVVLVQARH 301
Query: 300 ADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQEL 359
ADEGR+ AL I+ LS+KSSNPDAL+ MF AIK+VI GSEGRLAFPYQR+GMVNA+QEL
Sbjct: 302 ADEGRRDVALDIVKNLSQKSSNPDALDIMFNAIKSVIKGSEGRLAFPYQRVGMVNAIQEL 361
Query: 360 SNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFA 419
SNA +GKYL +LS TIC FLLSCYKD+GNEEVK+A LSA+ASWA +S +IIQ L+SFFA
Sbjct: 362 SNAPDGKYLINLSQTICDFLLSCYKDDGNEEVKIATLSAIASWADKSTNIIQESLVSFFA 421
Query: 420 SGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLI 479
SGLKEKE LRRG LR LR IC N DAVL++S LL PL+QLVKTGFTKAVQRLDGIYA L+
Sbjct: 422 SGLKEKEILRRGFLRSLRAICKNADAVLKMSPLLVPLVQLVKTGFTKAVQRLDGIYALLL 481
Query: 480 VGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHS 539
VGKIAA DIKAEE + KEK+W+ +SQNEPSL+P +M SKL+V+D +AC++LL VLL+EH
Sbjct: 482 VGKIAAVDIKAEEILVKEKIWATISQNEPSLIPISMASKLAVEDSIACIDLLEVLLLEHL 541
Query: 540 HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLV 599
R L FSV LLQLV+ F CHP WDIR++A + ++IITSVP LSE +L EFS +L+LV
Sbjct: 542 QRTLSNFSVTSLLQLVIFFICHPRWDIRRIACNVAKRIITSVPQLSEDILSEFSKYLNLV 601
Query: 600 GEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSI 659
EK+ + SDTD +D QVPF+PSVEV VK LL+++ A+ P + R+I CSHHP +
Sbjct: 602 EEKVSALRISDTDISLDPQVPFIPSVEVLVKALLIMSPAAMKVAPDSFVRIILCSHHPCV 661
Query: 660 VGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSL 719
VG+ KRDAVW+RL KCL+ GF+VI+IV+A+V N +VLLG +GL SAN LEQ+AAI+SL
Sbjct: 662 VGSAKRDAVWKRLCKCLQTHGFDVIDIVAANVINFVQVLLGPMGLRSANPLEQEAAISSL 721
Query: 720 STLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAA 779
S LMSI P DTY FEKHL +LP+ + H++LSENDIQ+F+TPEGMLS+EQG+Y+AE VA
Sbjct: 722 SNLMSIIPGDTYTEFEKHLLNLPERFSHNALSENDIQIFHTPEGMLSTEQGIYVAESVAF 781
Query: 780 KNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKA-------D 832
KNTKQ+KGRFRMY E+DG+DH SNHS KR+ +RE +GAGKKD GK+TKKA D
Sbjct: 782 KNTKQAKGRFRMYGEEDGLDHTQSNHSMKRDQPSREAAGAGKKDSGKTTKKAGKFSTSID 841
Query: 833 KGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLV--- 889
KGKTAKEEARE LL EEASIR++V+ +Q+NLSLML LG MAIAN +FAHS+LPS+V
Sbjct: 842 KGKTAKEEARESLLKEEASIRDRVREIQKNLSLMLRTLGNMAIANSIFAHSRLPSMVLEC 901
Query: 890 ---------------KFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
KFV+PLL+SPIV D A+E LV LSRCTA PLC+WALDI+TALRL+
Sbjct: 902 FLLIFVDLLPYICDVKFVEPLLRSPIVSDEAFETLVMLSRCTASPLCDWALDISTALRLV 961
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VT+EVH+ DL+PSV E N K S LFERI++GL+ SCKSG LPVDSFTFVFPI+ERI
Sbjct: 962 VTDEVHLLLDLVPSVAEEQVNQKPSHGLFERIIDGLSTSCKSGALPVDSFTFVFPIMERI 1021
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISV-------LYHVLGVVPSYQAAIGSA 1046
LL K+T HDDVL+++Y HMD LPLPR+RM+SV LYH L VVP+Y+A+IG A
Sbjct: 1022 LLCSKKTKFHDDVLRLIYLHMDAHLPLPRVRMLSVIFPTLHVLYHALSVVPAYKASIGPA 1081
Query: 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV 1106
LNEL LG QP+EVASAL+GVY KDVHVRMACLNAVKCIPAVS+RSLP+N EV+TS+WIA+
Sbjct: 1082 LNELSLGFQPDEVASALYGVYAKDVHVRMACLNAVKCIPAVSSRSLPQNTEVATSIWIAL 1141
Query: 1107 HDPEK---------------SVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAA 1151
HDPEK SVAE AEDIWD YG+DFGTD+SG+FKALSH NYNVRLAAA
Sbjct: 1142 HDPEKKLLFLALGEFGWMSTSVAEVAEDIWDHYGFDFGTDFSGIFKALSHVNYNVRLAAA 1201
Query: 1152 EALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK 1211
EALA ALDE+PD IQ SLSTLFSLYIRD+G+G DNVDAGWLGRQG+ALALHSAADVLRTK
Sbjct: 1202 EALAAALDEHPDLIQESLSTLFSLYIRDMGIGNDNVDAGWLGRQGVALALHSAADVLRTK 1261
Query: 1212 DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEE 1271
DLPV+MTFLISRALAD NADVRGRM+N+GI+IIDK+G+DNVSLLFPIFENYLNK A DEE
Sbjct: 1262 DLPVVMTFLISRALADLNADVRGRMINSGILIIDKNGKDNVSLLFPIFENYLNKTAPDEE 1321
Query: 1272 KYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331
+YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE+VQRAVS+CLSPLMQS
Sbjct: 1322 QYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSESVQRAVSACLSPLMQSK 1381
Query: 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
QDEA TLV+RLLDQ+MKS+KYGERRGAAFGLAGVVKGFG+S LKKY I L+E LA+RN
Sbjct: 1382 QDEADTLVTRLLDQMMKSEKYGERRGAAFGLAGVVKGFGLSCLKKYKIVIILQECLAERN 1441
Query: 1392 SAKRREGALLAFECLCEKLGRLFEPYV---------IQMLPLLLVAFSDQVVAVREAAEC 1442
SAK REGALL FECLCE LG+LFEPYV IQMLPLLLV+FSDQV AVREAAEC
Sbjct: 1442 SAKSREGALLGFECLCETLGKLFEPYVDKFLTHKYVIQMLPLLLVSFSDQVAAVREAAEC 1501
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1502 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1561
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTD+HPKVQSAGQTALQQVGSVIKNPEIA+LVPTLL GL+DPN+HTKYSLDILLQ
Sbjct: 1562 KLTEVLTDSHPKVQSAGQTALQQVGSVIKNPEIAALVPTLLKGLSDPNEHTKYSLDILLQ 1621
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL- 1621
TTFVN++DAPSLALLVPIVHRGLR RSA+TKK+A+QIVGNMCSLVTEPKDMIPYIGLLL
Sbjct: 1622 TTFVNSIDAPSLALLVPIVHRGLRVRSADTKKRASQIVGNMCSLVTEPKDMIPYIGLLLP 1681
Query: 1622 ----------PEVK---------------------------------------------- 1625
PEV+
Sbjct: 1682 EVKKVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGL 1741
Query: 1626 -KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684
+VLVDPIPEVRSVAARAIGSLI GMGE+NFPDLV WL + LKSDNSNVERSGAAQGLSE
Sbjct: 1742 SEVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGLSE 1801
Query: 1685 VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744
VLAALG +FEH+ PDIIRNCSHQ+ASVRDGYLTLFKYLPRSLGVQFQ YL QVLPAILD
Sbjct: 1802 VLAALGVEFFEHVFPDIIRNCSHQKASVRDGYLTLFKYLPRSLGVQFQKYLPQVLPAILD 1861
Query: 1745 GLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELL 1799
GLADENESVRDAALGAGHVLVEHYATT SLPLLLPAVEDGI ND+WRIRQSSVELL
Sbjct: 1862 GLADENESVRDAALGAGHVLVEHYATTYALSLSLPLLLPAVEDGIINDSWRIRQSSVELL 1921
Query: 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
GDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR+KRNE+LAALYMVR+DVSLS
Sbjct: 1922 GDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGREKRNEILAALYMVRADVSLS 1981
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
VRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLAS+SSERRQVAGR+LGELV KLGER
Sbjct: 1982 VRQAALHVWKTIVANTPKTLREIMPVLMDTLIASLASASSERRQVAGRSLGELVGKLGER 2041
Query: 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979
VLP IIPILS+GL DP +SRRQGVC GLSEVMASAGKSQL++FM +LIPTIRTALCDS
Sbjct: 2042 VLPLIIPILSQGLSDPDSSRRQGVCSGLSEVMASAGKSQLMTFMTDLIPTIRTALCDSEP 2101
Query: 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039
VRESAGLAFSTL+KSAGMQAIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPH
Sbjct: 2102 AVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDKTSDTALDGLKQILSVRTSAVLPH 2161
Query: 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAE 2099
ILPKLVH PLSAFNAHALGALAEVAGPGL+FHLGT+LP LLSAM D D +VQ+ AK+AAE
Sbjct: 2162 ILPKLVHPPLSAFNAHALGALAEVAGPGLDFHLGTVLPPLLSAMSDVDQEVQTSAKKAAE 2221
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
TV LVIDEEGVE L+SELLKGV D+QA+IRRSS+YLIGYF+KNSKLYLVDEAPNMISTLI
Sbjct: 2222 TVVLVIDEEGVEPLISELLKGVSDSQAAIRRSSSYLIGYFFKNSKLYLVDEAPNMISTLI 2281
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
VLLSD DS+TV AWEALSRV+ SVPKEV PSYIK++RDA+S+SRDKERRKKKGGP+LIP
Sbjct: 2282 VLLSDPDSSTVTVAWEALSRVIMSVPKEVLPSYIKLVRDAVSSSRDKERRKKKGGPVLIP 2341
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
GFCLPK+LQP+LPIFLQGLISGSAELREQAALGLGELIEV EQSLKE VIPITGPLIRI
Sbjct: 2342 GFCLPKSLQPILPIFLQGLISGSAELREQAALGLGELIEVAGEQSLKEVVIPITGPLIRI 2401
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
IGDRFPWQVKSAILSTL+I+IRKGGI+LKPFLPQLQTTF+KCLQD+TRT+RS AA+ALG
Sbjct: 2402 IGDRFPWQVKSAILSTLTIMIRKGGISLKPFLPQLQTTFVKCLQDNTRTIRSGAAVALGM 2461
Query: 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399
LS L+TRVDPLV DLLSSLQ SD G+REAIL+ALKGVLKHAGK+VSSAV R+YSVLKDL
Sbjct: 2462 LSGLNTRVDPLVSDLLSSLQGSDGGVREAILSALKGVLKHAGKNVSSAVSSRIYSVLKDL 2521
Query: 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRH 2459
++HDDD VRV AASILG+++Q +E Q +L+QE+ +LA+SP+W RHGS+L ++ L
Sbjct: 2522 IHHDDDRVRVYAASILGVLTQYLEAVQFTELIQEVTSLANSPNWPPRHGSILTISSLLYR 2581
Query: 2460 NPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILA 2519
NP+ I S LF +++D L+ +LKDEKFPLRE+STKALGRLLL++ Q P++T + D+L+
Sbjct: 2582 NPAPIFSSSLFQTVVDCLRDALKDEKFPLRESSTKALGRLLLYRAQEDPSDTVLYKDVLS 2641
Query: 2520 SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+V++ D+SSEVRRRALSA+K+VAKANPSAIM H + GPALAECLKD +TPVRLAAER
Sbjct: 2642 LLVTSTRDESSEVRRRALSAIKAVAKANPSAIMSHGTVIGPALAECLKDANTPVRLAAER 2701
Query: 2580 CAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPE 2614
CA+HAFQLT+GSE +Q QK+ITGLDARRLSKFPE
Sbjct: 2702 CAIHAFQLTKGSENVQAVQKYITGLDARRLSKFPE 2736
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183637|ref|NP_001185313.1| protein ILITYHIA [Arabidopsis thaliana] gi|332196169|gb|AEE34290.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3887 bits (10081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1914/2598 (73%), Positives = 2225/2598 (85%), Gaps = 63/2598 (2%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 142 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 201
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 202 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 261
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 262 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 321
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 322 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 381
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 382 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 441
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 442 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 501
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 502 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 561
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 562 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 621
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 622 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 681
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 682 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 741
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 742 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 801
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 802 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 861
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 862 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 906
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 907 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 966
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 967 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 1026
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 1027 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 1084
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FP VLYHVLGVVP+YQA++
Sbjct: 1085 TFIFP---------------------------------------VLYHVLGVVPAYQASV 1105
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1106 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1165
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1166 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1225
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1226 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1285
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1286 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1345
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1346 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1405
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1406 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1465
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1466 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1525
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV------LTDTHPKVQS 1517
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEV LTDTHPKVQS
Sbjct: 1526 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVFKTIQVLTDTHPKVQS 1585
Query: 1518 AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
AGQ ALQQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALL
Sbjct: 1586 AGQLALQQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALL 1645
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
VPIVHRGLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS
Sbjct: 1646 VPIVHRGLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1705
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
VAARA+GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+I
Sbjct: 1706 VAARAVGSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENI 1765
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757
LPD+IR+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAA
Sbjct: 1766 LPDLIRHCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAA 1825
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
LGAGHVLVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG
Sbjct: 1826 LGAGHVLVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1885
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
GSDDEGASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPK
Sbjct: 1886 GSDDEGASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPK 1945
Query: 1878 TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937
TLKEIMP+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP
Sbjct: 1946 TLKEIMPILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDV 2005
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+RQGVCIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG
Sbjct: 2006 DKRQGVCIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAG 2065
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
+QA+DEI+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHAL
Sbjct: 2066 LQAMDEIIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHAL 2125
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
GALAEVAG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SEL
Sbjct: 2126 GALAEVAGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSEL 2185
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
LKGV D+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL
Sbjct: 2186 LKGVSDSQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEAL 2245
Query: 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237
+RV+ SVPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQG
Sbjct: 2246 ARVIGSVPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQG 2305
Query: 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS 2297
LISGSAELREQAA+GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAIL+TL
Sbjct: 2306 LISGSAELREQAAIGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLI 2365
Query: 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357
I+I++GG+ALKPFLPQLQTTF+KCLQDSTRT+RSSAA+ALGKLSALSTR+DPLVGDL++S
Sbjct: 2366 ILIQRGGMALKPFLPQLQTTFVKCLQDSTRTIRSSAAVALGKLSALSTRIDPLVGDLMTS 2425
Query: 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 2417
Q +D+G+REAIL+A++GV+KHAGKS+ AV++R++ +LKDL++H+DD VR+SA S+LG+
Sbjct: 2426 FQAADSGVREAILSAMRGVIKHAGKSIGPAVRVRIFDLLKDLMHHEDDQVRISATSMLGV 2485
Query: 2418 MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477
+SQ +E QL+ LLQE+ +L++S +W ARHGSVL ++ L+HNPS I S LF S+L+ L
Sbjct: 2486 LSQYLEAAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFSSMLNSL 2545
Query: 2478 KSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRAL 2537
KSSLKDEKFPLRE+STKALGRLLL Q+ + P+NT VV+D+L+S+VSALHDDSSEVRRRAL
Sbjct: 2546 KSSLKDEKFPLRESSTKALGRLLLKQLATDPSNTKVVIDVLSSIVSALHDDSSEVRRRAL 2605
Query: 2538 SALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGA 2597
S+LK+ AK NPSA M ++++ GP LAECLKDG+TPVRLAAERCA+H FQLT+G+E +Q A
Sbjct: 2606 SSLKAFAKDNPSATMANISVIGPPLAECLKDGNTPVRLAAERCALHVFQLTKGAENVQAA 2665
Query: 2598 QKFITGLDARRLSKFPEH 2615
QK+ITGLDARRLSKFPE
Sbjct: 2666 QKYITGLDARRLSKFPEQ 2683
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2629 | ||||||
| RGD|1593434 | 2672 | Gcn1l1 "GCN1 general control o | 0.583 | 0.573 | 0.409 | 0.0 | |
| UNIPROTKB|Q92616 | 2671 | GCN1L1 "Translational activato | 0.570 | 0.561 | 0.408 | 0.0 | |
| UNIPROTKB|F1MZT7 | 2676 | GCN1L1 "Uncharacterized protei | 0.570 | 0.560 | 0.410 | 0.0 | |
| UNIPROTKB|F1NAK4 | 2672 | GCN1L1 "Uncharacterized protei | 0.565 | 0.556 | 0.405 | 0.0 | |
| FB|FBgn0039959 | 2630 | CG17514 [Drosophila melanogast | 0.570 | 0.570 | 0.401 | 0.0 | |
| DICTYBASE|DDB_G0279487 | 2667 | DDB_G0279487 "GCN1-like protei | 0.672 | 0.663 | 0.363 | 2.9e-302 | |
| UNIPROTKB|F1RJK5 | 1280 | GCN1L1 "Uncharacterized protei | 0.468 | 0.963 | 0.424 | 1.4e-263 | |
| POMBASE|SPAC18G6.05c | 2670 | SPAC18G6.05c "translation elon | 0.533 | 0.525 | 0.373 | 1.4e-262 | |
| UNIPROTKB|G4MR95 | 2678 | MGG_04710 "Translational activ | 0.646 | 0.634 | 0.339 | 4.3e-259 | |
| ASPGD|ASPL0000003073 | 2672 | AN10734 [Emericella nidulans ( | 0.509 | 0.501 | 0.384 | 1e-256 |
| RGD|1593434 Gcn1l1 "GCN1 general control of amino-acid synthesis 1-like 1 (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2957 (1046.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 646/1579 (40%), Positives = 942/1579 (59%)
Query: 1051 CLGLQPNEVASALHGVYTKDVHVRMACLNAVK----CIPAVSTRSLPENIEVSTSLWIAV 1106
C + EV L + + VR L + +PA T + + LW+
Sbjct: 1077 CAFAEQEEVDVLLAALQSPCASVRETALRGLMELHLVLPAPDTDE-KNGLNLLRRLWVVK 1135
Query: 1107 HDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDEYPDS- 1164
D E+ + + AE +W G D +D S L + + VR Y
Sbjct: 1136 FDKEEEIRKLAERLWTTMGLDLQSDLCSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQA 1195
Query: 1165 --IQGSLSTLFS--LY----IRDIGLG---GDNVDAGWLGRQGIALALHSAADVLRTKDL 1213
+ G L ++ LY + D LG ++ W R G+ALAL+ + L + +
Sbjct: 1196 AEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQWEARCGLALALNKLSQYLDSSQV 1254
Query: 1214 PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 1273
+ F + AL D N DVR ML+A + ++ HG++NV+ L P+FE +L K A ++ Y
Sbjct: 1255 KPLFQFFVPDALNDRNPDVRKCMLDAALATLNAHGKENVNSLLPVFEEFL-KDAPNDASY 1313
Query: 1274 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333
D VR+ VV+ G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+ ++++
Sbjct: 1314 DAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAVKE 1373
Query: 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393
+A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ +
Sbjct: 1374 DAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNF 1433
Query: 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSA 1453
+RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS LSA
Sbjct: 1434 RRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSA 1493
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H
Sbjct: 1494 HGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHV 1553
Query: 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573
KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+ +DAPS
Sbjct: 1554 KVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPS 1613
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633
LAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+P
Sbjct: 1614 LALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVP 1672
Query: 1634 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
EVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG
Sbjct: 1673 EVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEK 1732
Query: 1694 FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL LADENE
Sbjct: 1733 LEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENE 1792
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VRD AL AG ++ YA T++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +G
Sbjct: 1793 FVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTG 1852
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
K E S+D+ T +AII LG D+RN VLA LYM RSD L VRQA+LHVWK +
Sbjct: 1853 KMTTETASEDDNFGTAQSNKAIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIV 1912
Query: 1872 VANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931
V+NTP+TL+EI+P L L+ ++R +A R LG+LVRKLGE++LP IIPIL G
Sbjct: 1913 VSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEG 1972
Query: 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991
L+ + RQGVCIGLSE+M S + +L F + L+PT R ALCD + EVRE+A F
Sbjct: 1973 LRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQ 2032
Query: 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 2051
L + G QA+++I+P LL L+D++ S+ ALDGLKQ+++V++ VLP+++PKL P+
Sbjct: 2033 LHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAVKSRVVLPYLVPKLTTPPV-- 2090
Query: 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXX 2109
N L L+ VAG L HLG ILPA++ A+ + + L + V L + D
Sbjct: 2091 -NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTG 2149
Query: 2110 XXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169
+ + +R+++A ++ + SK +++S LI L +DS
Sbjct: 2150 HRIIIEDLLEATRSPEVGMRQAAAIILNMYCSRSKADYTSHLRSLVSGLIRLFNDSSPVV 2209
Query: 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQ 2228
+ +W+AL+ + + Q + I+ I ++ R + +PGFCLPK +
Sbjct: 2210 LGESWDALNAITKKLDAGNQLALIEEFHKEIRYIGNECRGEH------VPGFCLPKKGVT 2263
Query: 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288
+LP+ +G+++GS E +E+AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W V
Sbjct: 2264 SILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWSV 2323
Query: 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVD 2348
K+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS R VR +VD
Sbjct: 2324 KAALLETLSLLLGKVGIALKPFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVD 2383
Query: 2349 PLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 2407
PL +LL+ ++V D GIR+ +L AL+ V++ AG V +A++ + S+L ++ HD+D+
Sbjct: 2384 PLFTELLNGIRVVEDPGIRDTMLQALRFVIQGAGAKVDAAIRKNIVSLLLGMLGHDEDNT 2443
Query: 2408 RVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISM 2466
R+S+A LG + + W RHG L + + PS +
Sbjct: 2444 RISSAGCLGELCAFLTEEELNTVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCT 2503
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
+ D + S+ ++ P+ + + +G L+ + I++G + L ++ L
Sbjct: 2504 GKYSNEVQDMVLSNAVADRIPIAVSGIRGMGFLMKYHIETGGGQLPPRLSTL--LIKCLQ 2561
Query: 2527 DDSSEVRRRALSALKSVAKAN--PSAIMVHVAL--FGPALAECLKDGSTPVRLAAERCAV 2582
+ SS++R L A K + AN P + A+ AL + KD +T VR +E+ V
Sbjct: 2562 NPSSDIR---LVAEKMIWWANKEPRPALEPQAIKPILKALLDNTKDKNTVVRAYSEQAIV 2618
Query: 2583 HAFQLTRGSEYIQGAQKFI 2601
+ +L +G E +Q K +
Sbjct: 2619 NLLKLRQGEELLQSLSKIL 2637
|
|
| UNIPROTKB|Q92616 GCN1L1 "Translational activator GCN1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2939 (1039.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 630/1542 (40%), Positives = 926/1542 (60%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1113 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDLCSLLIDDVIYH 1171
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1172 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1230
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D + DVR ML+A + ++ HG++
Sbjct: 1231 WEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAALATLNTHGKE 1290
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L+
Sbjct: 1291 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALS 1349
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1350 TPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1409
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1410 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1469
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1470 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1529
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+
Sbjct: 1530 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPS 1589
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+
Sbjct: 1590 RKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQ 1648
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L +
Sbjct: 1649 KDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQ 1708
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG 1728
S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP + G
Sbjct: 1709 SSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFG 1768
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN 1788
+F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F+D
Sbjct: 1769 DKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDL 1828
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG ++RN VLA
Sbjct: 1829 WRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAG 1888
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRA 1908
LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A R
Sbjct: 1889 LYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAART 1948
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S + +L F + L+P
Sbjct: 1949 LGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVP 2008
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
T R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGLKQ+
Sbjct: 2009 TARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQV 2068
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-D 2087
+++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2069 MAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLG 2125
Query: 2088 MDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146
+ L + V L + D + + +R+++A ++ + SK
Sbjct: 2126 TPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIILNIYCSRSKAD 2185
Query: 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
+++S LI L +DS + +W+AL+ + + Q + I+ + I ++
Sbjct: 2186 YTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRLIGNE 2245
Query: 2207 ERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 2265
+ + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS +L
Sbjct: 2246 SKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADAL 2299
Query: 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS 2325
+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS
Sbjct: 2300 RPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKALQDS 2359
Query: 2326 TRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQ-VSDAGIREAILTALKGVLKHAGKSV 2384
R VR +VDPL +LL+ ++ + D G+R+ +L AL+ V++ AG V
Sbjct: 2360 NRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALRFVIQGAGAKV 2419
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SW 2443
+ ++ + S+L ++ HD+D+ R+S+A LG + + W
Sbjct: 2420 DAVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQCLLADVSGIDW 2479
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
RHG L + + P + + + + SS ++ P+ + + +G L+ H
Sbjct: 2480 MVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGVRGMGFLMRHH 2539
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM-VHVALFGP-- 2560
I++G + L V L + SS++R L A K + AN + + P
Sbjct: 2540 IETGGGQLPAKLSSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPPLDPQAIKPIL 2594
Query: 2561 -ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601
AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 2595 KALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLSKIL 2636
|
|
| UNIPROTKB|F1MZT7 GCN1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2936 (1038.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 634/1545 (41%), Positives = 926/1545 (59%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1115 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSTMGLDLQPDLCSLLIDDVIYH 1173
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1174 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1232
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D N DVR ML+A + ++ HG++
Sbjct: 1233 WEARCGLALALNKLSQCLDSSQVKPLFQFFVPDALNDRNPDVRKCMLDAALATLNTHGKE 1292
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L
Sbjct: 1293 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALA 1351
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V++CL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1352 TPSQQVQESVANCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1411
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1412 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1471
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1472 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1531
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLT 1547
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI A++ P LL LT
Sbjct: 1532 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILGHAAIAPVLLDALT 1591
Query: 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607
DP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL
Sbjct: 1592 DPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL- 1650
Query: 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 1667
T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L
Sbjct: 1651 TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLT 1710
Query: 1668 SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPR 1725
+ S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP
Sbjct: 1711 YEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPI 1770
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785
+ G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F
Sbjct: 1771 TFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLF 1830
Query: 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845
+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG D+RN V
Sbjct: 1831 DDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVDRRNRV 1890
Query: 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVA 1905
LA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A
Sbjct: 1891 LAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIA 1950
Query: 1906 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965
R LG+LVRKLGE++LP IIPIL GL+ P + RQGVCIGLSE+M S + +L F +
Sbjct: 1951 ARTLGDLVRKLGEKILPEIIPILEEGLRSPKSDERQGVCIGLSEIMKSTSRDAVLYFSES 2010
Query: 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 2025
L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGL
Sbjct: 2011 LVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGL 2070
Query: 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085
KQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2071 KQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKE 2127
Query: 2086 D-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNS 2143
+ L + V L + D + + +R+++A ++ + S
Sbjct: 2128 KLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMRQAAAIILNIYCSRS 2187
Query: 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203
K +++S LI L +DS + +W+AL+ + + Q + I+ + I
Sbjct: 2188 KADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRFI 2247
Query: 2204 RDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
++ R + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS
Sbjct: 2248 GNESRGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSA 2301
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322
+L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K L
Sbjct: 2302 DALRPSVVNITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKAL 2361
Query: 2323 QDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAG 2381
QDS R VR +VDPL +LL+ ++V D G+R+ +L AL+ V++ AG
Sbjct: 2362 QDSNRGVRLKAADALGKLISIHIKVDPLFMELLNGIRVMEDPGVRDTMLQALRFVIQGAG 2421
Query: 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP 2441
V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 2422 AKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSTVLQQYLLADVSG 2481
Query: 2442 -SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500
W RHG L + + P + + + D + S+ + P+ + + +G L+
Sbjct: 2482 IDWMVRHGRSLALSVAVSVAPGRLCVGKYGSDVQDMILSNALTFQIPIAVSGVRGMGFLM 2541
Query: 2501 LHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFG 2559
H I++G + L + L + SS++R L A K + AN + +
Sbjct: 2542 KHHIETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWANKDPLPALDPQAIK 2596
Query: 2560 P---ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601
P AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 2597 PILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLCKIL 2641
|
|
| UNIPROTKB|F1NAK4 GCN1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2880 (1018.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 622/1533 (40%), Positives = 925/1533 (60%)
Query: 1102 LWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDE 1160
LW+ D E + + AE +W+ G + D S L K + + VR +
Sbjct: 1130 LWVVKFDVEDEIQKLAERLWESMGLELQPDLCSLLIKDVIYHEEAVRQAGAEALSKAVAQ 1189
Query: 1161 YPDSIQGSLSTLFSLYIRDI--------GLG---GDNVDAGWLGRQGIALALHSAADVLR 1209
Y ++ L +Y + LG ++ W R GIALAL+ ++ L
Sbjct: 1190 YQHQAAEVMNKLTEIYQEKLYRPPPVLDALGRVISESPPDQWEARCGIALALNKLSEHLD 1249
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ + + F + AL D N +VR ML+A + ++ HG+DNV+ L P+FE +L K A +
Sbjct: 1250 SSQVKPLFQFFVPDALNDRNPEVRKCMLDAALSTLNTHGKDNVNSLLPVFEEFL-KNAPN 1308
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ YD VR+ VVI G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+
Sbjct: 1309 DASYDAVRQSVVILMGSLAKHLDKSDPKVKPIVGKLIAALSTPSQQVQESVASCLPPLVP 1368
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
+++++A ++ +L+ L++SDKY ER+GAA+GLAG+VKG GI SLK+ + TL + + D
Sbjct: 1369 AIKEDAGGMIQKLMQLLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMTTLTDAIQD 1428
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMS 1449
+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS
Sbjct: 1429 KKNFRRREGALFAFEMLCSMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMS 1488
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQS--SVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507
LS GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEV
Sbjct: 1489 NLSTHGVKLVLPSLLAALEEESWRTKAGTGSVELLGAMAYCAPKQLSSCLPNIVPKLTEV 1548
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567
LTD+H KVQ+AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+
Sbjct: 1549 LTDSHVKVQNAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVH 1608
Query: 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627
+DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K
Sbjct: 1609 FIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKAS 1667
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687
L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A
Sbjct: 1668 LLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMA 1727
Query: 1688 ALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LG E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL
Sbjct: 1728 GLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFIPYVGPIIPCILKA 1787
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENE VRD AL AG ++ YA T++ LLLP +EDG+F+D WRIR SSV+LLGDLLF
Sbjct: 1788 LADENEFVRDTALRAGQRIISMYAETAIALLLPQLEDGLFDDLWRIRFSSVQLLGDLLFH 1847
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
++G +GK E S+D+ T +AII LG ++RN VLA LYM RSD L VRQA+L
Sbjct: 1848 ISGVTGKMTTETASEDDNFGTAQSNKAIINALGVERRNRVLAGLYMGRSDTQLVVRQASL 1907
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSII 1925
HVWK +V+NTP+TL+EI+P L L+ ++R VA R LG+LVRKLGE++LP II
Sbjct: 1908 HVWKIVVSNTPRTLREILPTLFGLLLKFLASTCADKRTVAARTLGDLVRKLGEKILPEII 1967
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL GL+ RQGVCIGLSE+M S + +L F + L+PT+R ALCD + EVRE+A
Sbjct: 1968 PILEDGLRSDKNDERQGVCIGLSEIMKSTSRDAVLVFSESLVPTVRKALCDPLEEVREAA 2027
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
F L + G QA+++I+P LL L++++TSD A+DGLKQ+++V++ VLP+++PKL
Sbjct: 2028 AKTFEQLHSTIGHQALEDILPFLLKQLDNEETSDFAVDGLKQVMAVKSRVVLPYLVPKLT 2087
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLV 2104
P+ N L L+ VAG L HL ILPA++SA+ + + L ++V L
Sbjct: 2088 TPPV---NTRVLAFLSSVAGDALTRHLSVILPAMMSALKEKLGTSEEQLEMANCQSVILS 2144
Query: 2105 I-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 2163
+ D + +R+++A ++ + +K N++S LI L +
Sbjct: 2145 VEDDVGQRIITEDLLEATRSPDVGMRQAAAIILNIYCSKTKADYTGHLKNLVSGLIRLFN 2204
Query: 2164 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223
D++ + +W+AL+ + + Q + I+ + I ++ + + +PGFC+
Sbjct: 2205 DTNPVVLNESWDALNSITKKLDAGNQLALIEDLHKDIRVVGNEAKGEH------VPGFCI 2258
Query: 2224 PK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
PK + +L + +G+++G+ E +E+AA LG +I++TS ++LK V+ ITGPLIRI+GD
Sbjct: 2259 PKKGVTSILLVLREGVLTGNPEQKEEAAKALGLVIKLTSAEALKPSVVSITGPLIRILGD 2318
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXX 2342
RF W VK A+L TLS+++ K IALKPFLPQLQTTF K LQDS R VR
Sbjct: 2319 RFSWNVKVALLETLSLLLAKVEIALKPFLPQLQTTFTKALQDSNRAVRLKAADALGKLIV 2378
Query: 2343 XXTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
+VDPL +LL+ ++ SD + IR+ +L AL+ V + AG V + ++ + +VL ++
Sbjct: 2379 IHVKVDPLFTELLNGIRSSDDSAIRDTMLQALRFVTRGAGAKVDATIRKNISTVLLGMLG 2438
Query: 2402 HDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHN 2460
HD+D R+++A L + + W RHG L + +
Sbjct: 2439 HDEDATRMASAGCLAELCAFLSEEELNTVLHQHLLADISGIDWMVRHGRSLALSVAVNVA 2498
Query: 2461 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 2520
P + + S+L+ + S+ ++ P+ + + +G L+ + ++ G N + L
Sbjct: 2499 PYRLCSPKYYNSVLEMILSNATADRIPIAVSGIRGMGFLMKYHMEEG-GNLPPKLSNL-- 2555
Query: 2521 VVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFGP---ALAECLKDGSTPVRLA 2576
+ L + SS+++ L A K + AN + + + P AL + KD +T VR
Sbjct: 2556 FIKCLQNSSSDIK---LVAEKMIWWANKNHLPALDPQTIKPILKALLDNTKDKNTSVRAY 2612
Query: 2577 AERCAVHAFQLTRGSEYIQGAQKFITGLDARRL 2609
+++ V+ ++ G + ++ K LDA L
Sbjct: 2613 SDQAIVNLLKMRVGEQVLESVSKI---LDAASL 2642
|
|
| FB|FBgn0039959 CG17514 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2827 (1000.2 bits), Expect = 0., Sum P(4) = 0.
Identities = 617/1538 (40%), Positives = 911/1538 (59%)
Query: 1073 VRMACLNAVKCIP--AVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAEDIWDRYGYDF 1128
VR L ++K + V+ + ++E + W+A HDPE+ E A +W+ +
Sbjct: 1058 VRKVALQSLKIMVNGIVNHIKVDNSLEKVIINRFWVAKHDPEEENRELALFLWNTAKFPL 1117
Query: 1129 GTDYSGLFKALSHSNYNVRXXXXXXXX--XXXDEYPDSIQGSLSTLFSLYIRDIGLGG-- 1184
Y + ++HS ++ DE + LFS+Y + L
Sbjct: 1118 -PGYVDIINDITHSETCIQKSASESLIPLLAGDEVLKKCV--IKKLFSIYKAKLSLLPPV 1174
Query: 1185 -DNVDAG-------WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRM 1236
D D W R+GIA+A + A +L +D+ IM F++S+ L D V M
Sbjct: 1175 LDQFDREIEPAIDQWKPRRGIAIAFSTIAFLLSIEDINDIMNFMVSQGLGDREDVVHKEM 1234
Query: 1237 LNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP 1296
L + I+D HG + L P+FE++L+K A + YD +R+ VVI G+LA+HL KDD
Sbjct: 1235 LATALKIVDLHGNKAIENLLPVFEDFLDK-APKSQSYDNIRQAVVILMGSLARHLEKDDK 1293
Query: 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERR 1356
++ +V +L+ L+TPS+ VQ AVS+CL LM S++DEAP+++ +LL L KS+KYGERR
Sbjct: 1294 RIDPIVKRLITSLSTPSQQVQEAVSNCLPHLMPSVKDEAPSMIKKLLHSLAKSEKYGERR 1353
Query: 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416
GAA+G+AG+VKG GI SLK+ I + L + D+ + + REGAL AFE LC LGRLFEP
Sbjct: 1354 GAAYGIAGIVKGLGILSLKQLDIMSKLTAFIQDKKNYRSREGALFAFEVLCSTLGRLFEP 1413
Query: 1417 YVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
Y++ +LP LL F D +M +LSA GVKLVLPSLL+ L++ +WRTK
Sbjct: 1414 YIVHVLPHLLQCFGDPSQYVRQAADDTAKVVMRKLSAHGVKLVLPSLLEALDEDSWRTKT 1473
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536
+SV+LLGAMA+CAP+QLS CLP IVPKL +VL D+H KVQ +G AL+ +GSVIKNPEI
Sbjct: 1474 ASVELLGAMAFCAPKQLSSCLPSIVPKLIQVLGDSHTKVQESGGEALKVIGSVIKNPEIQ 1533
Query: 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
++VP LL L DP+++T L LL+T F++ +DAPSLAL++P+V R +RS ET+K A
Sbjct: 1534 AIVPVLLDALEDPSNNTSTCLQSLLKTKFIHFIDAPSLALIMPVVQRAFMDRSTETRKMA 1593
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
AQI+GNM SL T+ KD+ PY+ ++P +K L+DP+PEVR+V+ARA+G++++GMGE +F
Sbjct: 1594 AQIIGNMYSL-TDQKDLAPYLPSIIPGLKSSLLDPVPEVRAVSARALGAMVKGMGESSFE 1652
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRD 1714
+L+ WL++ L S++S+V+RSGAAQGLSEV+ LG ++P+II A V+D
Sbjct: 1653 NLLPWLMETLTSESSSVDRSGAAQGLSEVVGGLGVEKMHKLMPEIISTAERVDIAAHVKD 1712
Query: 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774
GY+ +F Y+P + +F Y+ Q++ IL LADE+E VRD AL AG +V YA T++
Sbjct: 1713 GYIMMFIYMPGAFQEEFTPYIGQIINPILKALADESEFVRDTALKAGQRIVNLYAETAVA 1772
Query: 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834
LLLP +E G+F+DNWRIR SSV+LLGDLL++++G SGK E S+D+ TE AII
Sbjct: 1773 LLLPELEKGLFDDNWRIRYSSVQLLGDLLYRISGVSGKMTTETASEDDNFGTEHSHTAII 1832
Query: 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXX 1894
LG ++RN VL+ LYM RSDVSL VRQAALHVWK +V NTP+TL+EI+P L L+
Sbjct: 1833 HFLGDERRNRVLSGLYMGRSDVSLMVRQAALHVWKVVVTNTPRTLREILPTLFGLLLGCL 1892
Query: 1895 XXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954
++RQVA R LG+LVRKLGERVLP IIPIL GL +RQGVCIGLSE+M S
Sbjct: 1893 ASTSYDKRQVAARTLGDLVRKLGERVLPEIIPILENGLNSDHPDQRQGVCIGLSEIMGST 1952
Query: 1955 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014
K +L+F+D L+PT+R ALCD + EVRE+A F +L + G +A+DEI+P +L L D
Sbjct: 1953 SKEMVLTFIDSLVPTVRKALCDPLPEVREAAAKTFESLHSTVGSRALDEILPFMLQGLSD 2012
Query: 2015 DQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL 2072
++ LDGL+Q++S+++ VLP+++P+L P+ N AL L VAG L +L
Sbjct: 2013 ADPFVAENTLDGLRQVMSIKSKVVLPYLVPQLTSPPV---NTKALSILVSVAGEALIKYL 2069
Query: 2073 GTILPALLSAMGDD-DMDVQSLAKEAAETVTL-VIDXXXXXXXXXXXXKGVGDNQASIRR 2130
IL +LL A+ D + E +TV L V D + R+
Sbjct: 2070 PKILSSLLEALSDAYGYPNEPQENEYCQTVILSVTDETGIRTIMDTLLISANSSDLCTRK 2129
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190
S+A L+ F +S + P ++ L+ LL +SD + +WEAL+ V+ + Q
Sbjct: 2130 SAASLLSAFCIHSPGNYYEYIPQLLRCLLKLLVESDKDILQKSWEALNAVIKGMNAAQQI 2189
Query: 2191 SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAA 2250
++ +R A+ + + + +PGFCLPK + PLLP+F + +++G E +E AA
Sbjct: 2190 CHVSDVRQAVRFAASELEGTE------LPGFCLPKGITPLLPVFREAILNGLPEEKENAA 2243
Query: 2251 LGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310
GLGE+I +T+ +SL+ V+ ITGPLIRI+GDRF VK+A+L TLSI++ K G+ LK F
Sbjct: 2244 QGLGEVIFLTNAKSLQPSVVHITGPLIRILGDRFNAAVKAAVLETLSILLHKVGVMLKQF 2303
Query: 2311 LPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSD-AGIREAI 2369
LPQLQTTF+K L D R VR +R +PL ++ + ++ SD + +RE +
Sbjct: 2304 LPQLQTTFLKALHDQNRNVRMKAGKALSELVAIHSRAEPLFNEIHNGIKNSDDSSVRETM 2363
Query: 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXX 2429
L AL+ ++ +G +S +K ++Y L ++ H +D R + LG + + +
Sbjct: 2364 LHALRSIVSRSGDKMSEPIKKQIYVTLLSMIGHHEDATRSAVGGCLGAILKYIASGHVYD 2423
Query: 2430 XXXXXXXXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLR 2489
+HG +V L+ P+ + + L I + ++ EK P+
Sbjct: 2424 LFNNIILTNNTDDLIVKHGHTIVLFVALKECPTEVLVLDLPEKITSYVLINILSEKVPIA 2483
Query: 2490 EASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549
+ +A LL + + + +V L+ ++ +D ++ ++ + L AN S
Sbjct: 2484 SNAVRAATYLLDYYLVNQNEPPIKIVMALSRAMNHSSNDVKQLVAQSCTYLSKNLAANQS 2543
Query: 2550 AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
+I V L P L K+ + V+ +E + +L
Sbjct: 2544 SIDVLKYLV-PMLVNGTKEKNGYVKSNSELALISILRL 2580
|
|
| DICTYBASE|DDB_G0279487 DDB_G0279487 "GCN1-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 2792 (987.9 bits), Expect = 2.9e-302, Sum P(3) = 2.9e-302
Identities = 663/1824 (36%), Positives = 1008/1824 (55%)
Query: 793 EEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTXXXXXXXXXXXXXXS- 851
E+Q+ + ++ K ++A + +K I + KK G+ +
Sbjct: 833 EKQEQLVESRNDRKVKPKTAEEQRDEESRKRI-EEKKKIQSGELEKQEKERQKQLAAQAV 891
Query: 852 IREKVQGVQRNLSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEAL 909
IR+ VQ V L L + MA +NP F + ++ + L++ I +
Sbjct: 892 IRKDVQDVIDRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVF 951
Query: 910 VKLSRCTAMPLCNWALDIATALRLI-VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNG 968
KL C +P + LD + A I + ++ P++ E + L ++I+
Sbjct: 952 EKLICC--VP-SRFKLDRSFARHYIYIINNIYYR----PTLSEI----QILGFIQKILTH 1000
Query: 969 LTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDXXXXXXXXXMISV 1028
+ S L +F + +PII+ L + + + ++++ KH MIS
Sbjct: 1001 IRESIAKEALSGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISS 1060
Query: 1029 LYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVS 1088
L V+ +A + + +L G++ +++ + G+ +K V VR CL A++ IP++
Sbjct: 1061 LIIVVSTNSRLEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIY 1120
Query: 1089 TRSLPENIEVSTSLWIAVHDPEKSVAEA-AEDIWDRYGYDFGTDYSGLF-KALSHSNYNV 1146
+ S + SLW A D + A AE IW + T F K LS S +NV
Sbjct: 1121 SPSFVWEDKYIGSLWFARFDNHDANTSALAEKIW--LATNQPTQLPEDFMKLLSDSTFNV 1178
Query: 1147 RXXXXXXXXXXXDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
E + I + LF +Y ++ R +A AL
Sbjct: 1179 NSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALS 1238
Query: 1203 SAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
+ ++ + L + T +I R L D +V ++ G+ II++ G L FE
Sbjct: 1239 GLGNAIVEPEVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEA 1298
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
+L + + + D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S
Sbjct: 1299 FLARPDNGTGEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGIS 1358
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380
C++ L+ S + + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I
Sbjct: 1359 KCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSIL 1418
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXX 1440
TL+ + D+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D
Sbjct: 1419 DTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDAT 1478
Query: 1441 XXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+MSQLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP I
Sbjct: 1479 ADTAKAIMSQLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTI 1538
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 1560
VPKLT VL DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ L
Sbjct: 1539 VPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENL 1598
Query: 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
L T +V+T+D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L
Sbjct: 1599 LSTNYVHTIDPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNIL 1657
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+P +K VL+DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQ
Sbjct: 1658 MPVMKTVLLDPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQ 1717
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
GLSEVLA+L F ++ +++ + R VR+G L++F + P SLG F YL +VLP
Sbjct: 1718 GLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLP 1777
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+L GLAD+++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L G
Sbjct: 1778 QVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFG 1837
Query: 1801 DLLFKVAGTSGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
DLLFK+AGT+ + + S DD+ + G I ++LG+++ +L++LYM+R D
Sbjct: 1838 DLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFD 1897
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRK 1915
+ SVRQ L +WK IV+NTPKTL+EI+P L+ +I E+RQ++ + LG++V K
Sbjct: 1898 NNSSVRQKVLLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSK 1957
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
L +R+LP I+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALC
Sbjct: 1958 LSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALC 2016
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA---LDGLKQILSVR 2032
D +++VRE+A AF L+ + G +A +EI+P L+ L++ D A LDGL+Q++ VR
Sbjct: 2017 DPLIDVREAAAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVR 2076
Query: 2033 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD-MDVQ 2091
++ VLP ++PKL+ P+S N AL +LA AG GL HL TI+P+L+ + + + +
Sbjct: 2077 SSIVLPVLIPKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNA 2136
Query: 2092 SLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151
KEAA ++ ID + +IR + LIG FY + + V E
Sbjct: 2137 KEIKEAAVSICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNTM--VTEY 2194
Query: 2152 PN-MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210
P ++ +L+ L +D D+ AA AL + S+ K+ +Y+ V + I ++ +
Sbjct: 2195 PEELLLSLLSLFNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEE 2253
Query: 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI 2270
IPGFCLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+
Sbjct: 2254 VS----TIPGFCLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVM 2309
Query: 2271 PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVR 2330
ITGPLI +IGD+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR
Sbjct: 2310 QITGPLILVIGDKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVR 2369
Query: 2331 XXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390
+ VD LV L++ + +D+ +E+ L AL+ + + K V A
Sbjct: 2370 TNAASALGLLMTLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLD 2428
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXPSWAARHGSV 2450
+ + + D +Y D +R A +G S+C S +R+G
Sbjct: 2429 KAIATIVDFLYQPSDDLRSMVAQTIGASSKCFTSLTELNQFIKTNLISPSQSVLSRYGKS 2488
Query: 2451 LVFATFLRHNPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508
L + + + S SP +I+ +++ +DEK P+RE+S +L+ + P
Sbjct: 2489 LALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----ASP 2544
Query: 2509 ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLK 2567
T D++ S+ + D SS V AL+ +K K+N ++ + P + +
Sbjct: 2545 L--TYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLKE 2602
Query: 2568 DGSTPVRLAAERCAVHAFQLTRGS 2591
+ P++LAAER VH+ Q+ + S
Sbjct: 2603 RTNLPLKLAAERTLVHSLQIFKES 2626
|
|
| UNIPROTKB|F1RJK5 GCN1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2536 (897.8 bits), Expect = 1.4e-263, P = 1.4e-263
Identities = 535/1259 (42%), Positives = 775/1259 (61%)
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+L
Sbjct: 2 ERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKL 61
Query: 1414 FEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYV+ +LP LL+ F D +MS LSA GVKLVLPSLL LE+++WR
Sbjct: 62 FEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWR 121
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NP
Sbjct: 122 TKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNP 181
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI ++ P LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+
Sbjct: 182 EILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTR 241
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE
Sbjct: 242 KMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGES 300
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS-- 1711
F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S +
Sbjct: 301 CFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPH 360
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VRDGY+ +F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T
Sbjct: 361 VRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAET 420
Query: 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831
++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +
Sbjct: 421 AIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNK 480
Query: 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891
AII LG D+RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+
Sbjct: 481 AIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLL 540
Query: 1892 XXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951
++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M
Sbjct: 541 GFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIM 600
Query: 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
S + +L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL
Sbjct: 601 KSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQ 660
Query: 2012 LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFH 2071
L+D++ S+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L H
Sbjct: 661 LDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRH 717
Query: 2072 LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIR 2129
LG ILPA++ A+ + + L + V L + D + + +R
Sbjct: 718 LGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMR 777
Query: 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189
+++A ++ + SK +++S LI L +DS + +W+AL+ + + Q
Sbjct: 778 QAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQ 837
Query: 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQ 2248
+ I+ + I ++ + + +PGFCLPK + +LP+ +G+++GS E +E+
Sbjct: 838 LALIEELHKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEE 891
Query: 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALK
Sbjct: 892 AAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALK 951
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIRE 2367
PFLPQLQTTF K LQDS R VR +VDPL +LL+ ++V D G+R+
Sbjct: 952 PFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRVMEDPGVRD 1011
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXX 2427
+L AL+ V++ AG V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 1012 TMLQALRFVIQGAGAKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEEL 1071
Query: 2428 XXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF 2486
W RHG L + + PS + + D + S+ +
Sbjct: 1072 SAVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCTGKYSSEVQDMILSNAFALQI 1131
Query: 2487 PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKA 2546
P+ + + +G L+ + +++G + L + L + SS++R L A K + A
Sbjct: 1132 PIAVSGVRGMGFLMKYHVETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWA 1186
Query: 2547 NPSAI-MVHVALFGP---ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601
N + + P AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 1187 NKDPLPALDPQAIKPILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLCKIL 1245
|
|
| POMBASE|SPAC18G6.05c SPAC18G6.05c "translation elongation regulator Gcn1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 2383 (843.9 bits), Expect = 1.4e-262, Sum P(4) = 1.4e-262
Identities = 537/1439 (37%), Positives = 853/1439 (59%)
Query: 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALAD-----TNAD--VRGRMLNAG 1240
D G + R+ +A++ + L + L + FL++ + A+ T+A V +ML AG
Sbjct: 1204 DLGRIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSKMLEAG 1263
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ I + G V L +FE LN + + D +RE V+ G +A+HL +DP++
Sbjct: 1264 KLAIFQSGAHQVEALMELFEQKLNVDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAV 1323
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
V+D LL VL+TPSE+VQ AV+ CL PL++ ++ L ++LM S +++GAA+
Sbjct: 1324 VMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSLADQKGAAY 1383
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG+GI + + + I +L E +++R +A R+ AL A E LG FEPY+
Sbjct: 1384 GLAGLVKGYGIKAFQDFNILDSLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPD 1443
Query: 1421 MLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LPLLL +F D +MSQLSA GVKL+LP+LL GL + WR+K++SV+
Sbjct: 1444 LLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVE 1503
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
+LG M+Y AP+QLS LP I+PKL+EVLTD+H +V++ +L + G VI NPEI +LVP
Sbjct: 1504 ILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQTLVP 1563
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
TLL L+D +T +L+ LL+T+FV+ +D PSLAL++PI+ GLRER+A TK+++A+I
Sbjct: 1564 TLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKRQSAKIF 1623
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
G M SL TEP+++ Y+ L+P +++VL+DP+P+ R+ AA+A+GSLI +GE+ FP L+
Sbjct: 1624 GLMASL-TEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEKLGEKKFPTLIP 1682
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720
L + L+S+ S V+R GAAQGLSE+LA LG E +LP+I++N S +R+ +++L
Sbjct: 1683 ELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNTSSPVPHIRESFISLL 1742
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAV 1780
YLP + G +FQ YL + +P IL GLAD++E V+ A+L A ++V +YAT S+ LLLP +
Sbjct: 1743 IYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPEL 1802
Query: 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840
E G+F++ WRIR SSV+L+GDL+FK+AG + KAL E ++EG ++ +A+++++G++
Sbjct: 1803 EKGLFDNAWRIRLSSVQLVGDLVFKLAGINRKALQED-EEEEGTHSDVSRKALLDIIGQE 1861
Query: 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXE 1900
+ + +L+ LY+VR D++ VR A+ +WK IV NTP+T++EI+P L + ++ +
Sbjct: 1862 RHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVSNLNSSSND 1921
Query: 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
RR + ++LG+L++K G VLP ++P+L +GL+ ++ R GVCI L E++ SA QL
Sbjct: 1922 RRTMCVKSLGDLLKKAGFDVLPQLLPVLKQGLESANSGDRIGVCIALEELINSATPEQLE 1981
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
+ D+ + +R AL D LEVRE+A AF +L G +A+D+++P LL LE + S+
Sbjct: 1982 IYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQ 2041
Query: 2021 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 2080
AL L++I+S R++ + P ++P L+ P+SAFNA AL +LA+VAG LN L +IL AL+
Sbjct: 2042 ALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALSSLAQVAGVTLNKRLPSILNALM 2101
Query: 2081 -SAMGDDDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRR--SSAYLIG 2137
S++ D+ +L A + V L + +++ +R ++ +++
Sbjct: 2102 ESSLASTGDDLVAL-NGAIDKVNLSVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHML- 2159
Query: 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197
F++N KL + + I L D V AA A + +V+++ K+ S + +
Sbjct: 2160 VFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSI-- 2217
Query: 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257
A + RD +G + +P F + + + +LPIFL GL+ G+ + REQ+ALG+ +++
Sbjct: 2218 -AYHSLRDVG---SQG--VNLPAFEVAQGVNSILPIFLYGLMHGTMDQREQSALGIADIV 2271
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
T L+ FV ITGPLIRIIG+RFP +VK AIL TL+II+ K L+PFLPQLQ T
Sbjct: 2272 LKTEPSKLRPFVTQITGPLIRIIGERFPVEVKCAILYTLNIILSKISTFLRPFLPQLQRT 2331
Query: 2318 FIKCLQD-STRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376
F KCL D S+ +R TR+ P++ +L+S + DAG+R+A+L AL V
Sbjct: 2332 FAKCLGDPSSEVIRSRAATALGTLITLQTRLAPIITELVSGARTPDAGVRKAMLNALFAV 2391
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXX 2436
+ +G++++ A + +L ++ +H+ V A + G + +
Sbjct: 2392 VSKSGQNMNEASAEAIEQLLDEISAESSEHM-VICAKLYGALFSHLPDAQAKQLLESKVL 2450
Query: 2437 XXXXPSWAARHGSVLVFATFLRHNPSAI---SMSPLFLSILDRLKSSLKDEKFPLREAST 2493
S SVL+ ++ I +S + SI+ +SL+ E + E
Sbjct: 2451 SLEIQS----EFSVLILNAAVKFGSQKIIELKLSDIVCSIIST--ASLQKE-VTIAENGI 2503
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
ALG+ LL I N +V+ L + A S + RR AL ++ V+K N S I
Sbjct: 2504 LALGKALLADIPQSFGNAKNLVEALKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKP 2563
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKF 2612
H+++ PA+ C++ PV+LAAE + FQL + K+I L+ R F
Sbjct: 2564 HISILAPAIFGCVRAIVIPVKLAAEAAFLALFQLVEDDSVLN---KYIETLEGPRARSF 2619
|
|
| UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 2384 (844.3 bits), Expect = 4.3e-259, Sum P(2) = 4.3e-259
Identities = 602/1774 (33%), Positives = 944/1774 (53%)
Query: 851 SIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQL-PSLVKFVDPLLQSP--IVGDVAYE 907
+IRE+V+GV + + + +A P A + P++ +D + I GD A
Sbjct: 858 AIRERVRGVAAKVMRGVGVIKSLATGPPTDATLWMGPAVNALLDAVDAGACLITGDAAPT 917
Query: 908 ALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVN 967
A + + + L ++ I A T H +L+P E K + L R++
Sbjct: 918 AYLACADRVSSRLGSFRQFIGVA-----TLRAH-GVELLP---ENLKAEPFEDLVTRVMY 968
Query: 968 GLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD-----VL--QMLYKHMDXXXXX 1020
L + + P V S ++ P+ IL +D VL ++L H D
Sbjct: 969 RLRFAGEQRPFDVVSVNYMLPLALLILNKGGFGATAEDRDTHLVLATELLSFHTDTASSE 1028
Query: 1021 XX--XXMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN----EVASALHGVYTKDVHVR 1074
M+ L + V + I +++ + PN E+ G VR
Sbjct: 1029 ALPRAQMLETLISSMQVYNQHYKIIRDCFSDMVRCVAPNISEKEIGVVARGAIVPQTSVR 1088
Query: 1075 MACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS- 1133
L ++ +S +E S +WIA H+ + E A++IW+ G+ D
Sbjct: 1089 TTVLQSISADVDMS------ELEFSEEIWIAYHEDSEENVELAKEIWEESGFQTSKDVPV 1142
Query: 1134 GLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSLSTLFSLYIR----------DIGLG 1183
+ L + +R +P+++ L L Y+ + G+
Sbjct: 1143 KMLPYLESKDGQLRKAASRALAEACSNHPETVNLILEKLRLAYVEFAKPRVPELDEFGMP 1202
Query: 1184 GD-NVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRA-LADTNADVRGRMLNAGI 1241
++ W R GIA + A L+ + L FLI + L D N VR ML A
Sbjct: 1203 KKMDLSDPWEARHGIASSFKELAPYLKREHLDSFFAFLIEQGPLGDQNGSVRAEMLEAAN 1262
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
I+ HG+ V L FE L D V E V+I GALA+HL D K+ V
Sbjct: 1263 KAIEIHGKGMVDKLMKTFETTLEAPDKGSAAADRVNEAVIIMYGALARHLKAGDAKIPVV 1322
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFG 1361
+++L+ L+TPSEAVQ A++ CL PL+++ +++ +++ L+ S Y +RGAA+G
Sbjct: 1323 IERLIATLSTPSEAVQYAIAECLPPLVKACGNKSSKYFDEIMETLLTSKNYAVQRGAAYG 1382
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421
LAG+V G GI+SL+++ I + L L ++ A +RE ALLA+E L LGRLFEPYVI +
Sbjct: 1383 LAGLVLGRGIASLREFRIMSNLHSALENKKEANQRESALLAYELLATILGRLFEPYVILI 1442
Query: 1422 LPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
+P LL F D ++LS+ GVK +LP+LL+GL+D WR+K+ + L
Sbjct: 1443 VPQLLAGFGDSNANVRDAALASAKACFARLSSYGVKQILPTLLRGLDDDQWRSKKGACDL 1502
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
LGAMAY PQQL+ LP+I+P LT VL D+H +V+S +L++ G VI NPE+ LV
Sbjct: 1503 LGAMAYLDPQQLALSLPEIIPPLTAVLNDSHKEVRSGANKSLKRFGEVISNPEVKGLVDI 1562
Query: 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601
LL L+DP +T +LD L++ FV+ +DAPSLAL+ I+ RGL +RS TK+KA+Q++G
Sbjct: 1563 LLKALSDPTKYTDEALDSLIKVQFVHYLDAPSLALVSRILQRGLADRS-NTKRKASQVIG 1621
Query: 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661
++ L TE KD++ ++ +L+ +K +VDP+P R+ A+RA+GSL+ +GEE PDL+
Sbjct: 1622 SLAHL-TERKDLVSHLPVLVAGLKIAVVDPVPTTRATASRALGSLMEKLGEEALPDLIPG 1680
Query: 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721
L+ LKSD +R G+AQ LSEVLA LGT E LP I++N + +VR+G+++LF
Sbjct: 1681 LMQTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETLPTILQNVESSKPAVREGFMSLFI 1740
Query: 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781
+LP G F NYL +++P IL GLAD+ E++R+ AL AG +LV+++A ++ LLLP +E
Sbjct: 1741 FLPVCFGNSFANYLGRIIPPILSGLADDIEAIRETALKAGRLLVKNFAVRAVDLLLPELE 1800
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
G+ +D++RIR SSVEL+GDLLF + G SGK E G +DE + G ++ E LG +K
Sbjct: 1801 RGLADDSYRIRLSSVELVGDLLFNLTGISGKT--EDGDEDEEEKVKEAGNSLREALGDEK 1858
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXER 1901
RN++L+ALY+ R D + SVR AA+ VWK +V++ PKTLKE++P L +I E
Sbjct: 1859 RNKILSALYICRCDTATSVRAAAVAVWKALVSS-PKTLKELVPTLTQLIIRRLGSTNMEH 1917
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGKSQLL 1960
+ +A ALGEL+RK G+ VL S++P L GL+ + RQG+C+ L E+++SA + L
Sbjct: 1918 KVIASNALGELIRKAGDNVLSSLLPTLEEGLQTSTDVDARQGICLALKELISSASEEALE 1977
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
LI +RTAL DS EVRE+A AF +L + G +A+D+++P LL+ L + ++
Sbjct: 1978 EHEKILISVVRTALTDSDTEVREAAAEAFDSLQQILGKRAVDQVLPFLLNLLRSEDEAEN 2037
Query: 2021 ALDGLKQILS--VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
AL L +L+ R+ +LP+++P L+ P+SAFNA AL +L+ VAG +N L I+ +
Sbjct: 2038 ALSALLTLLTETTRSNIILPNLIPTLIAPPISAFNAKALASLSRVAGAAMNRRLPNIVNS 2097
Query: 2079 LLSAMGD-DDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSA-YLI 2136
L+ + + D ++ + TV ID + ++ +R++ +
Sbjct: 2098 LMDNLVNCKDDSLREDLDASFHTVISSIDEYDGLNTVMNVLLQLTKHEDHRKRAATGKQL 2157
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
F+ + + ++I +L++ DSD V +AW ALS + KE + +
Sbjct: 2158 ARFFAATDVDYSRYNQDIIRSLLISFDDSDMEVVKSAWSALSEFTKKLRKEEMEALV--- 2214
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 2256
+ST + + G + GF LPK + +LPIFLQGL++G+ + + Q+AL + ++
Sbjct: 2215 ---VSTRQTLLQVGVAGNNL--KGFELPKGVSAILPIFLQGLMNGTPDQKIQSALAISDI 2269
Query: 2257 IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316
+ TSE SLK FV+ ITGPLIR++ +R +VKSAIL TL+ ++ K ALKPFLPQLQ
Sbjct: 2270 VARTSEASLKPFVVQITGPLIRVVSERST-EVKSAILLTLNNLLEKMPTALKPFLPQLQR 2328
Query: 2317 TFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375
TF K L D+T +R RVDPL+ +L++ + +D G+R A+L AL
Sbjct: 2329 TFAKSLADTTSEQLRSRAAKALGTLIKYTPRVDPLIAELVTGSKTTDPGVRTAMLKALFE 2388
Query: 2376 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXX 2435
V+ AG ++ + V ++ DD + V+ A +LG + + +
Sbjct: 2389 VISKAGANMGEPSRAAVLGLIDMETDEKDDAMTVTNAKLLGALVKNVSGDAAHNLIKSRV 2448
Query: 2436 XXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
P+ + SVL L P+AI P + + L + + + + S A
Sbjct: 2449 LTPT-PTTS----SVLGLNAVLLDAPAAIMEGPFAEELPELLVQGISSKIAMIADNSILA 2503
Query: 2496 LGRLLLHQIQSGP-ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
G+ LL++ QS P +T V + LA+ V + ++ RR +L +++V++ N H
Sbjct: 2504 AGKYLLNE-QSKPFEHTKAVFEALANTVGP--GNPTDSRRLSLVVVRTVSRVNMDLARPH 2560
Query: 2555 VA-LFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
+ L GP A ++D PV+LAAE V F +
Sbjct: 2561 LPQLAGPVFAS-VRDPVIPVKLAAEAAFVSLFNV 2593
|
|
| ASPGD|ASPL0000003073 AN10734 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 2289 (810.8 bits), Expect = 1.0e-256, Sum P(3) = 1.0e-256
Identities = 533/1388 (38%), Positives = 819/1388 (59%)
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
+ NEV L G D VR A L A+ ++ E+I W+ HD +
Sbjct: 1066 INENEVNVLLKGTIVSDPSVRSAVLQAIDAEIDLTDMDFSEHI------WLECHDHVEEN 1119
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSL-ST 1171
AE AE IW+ G + T Y L L + N+R E S+ G + S
Sbjct: 1120 AEIAESIWEENGLEIDETAYGKLIPYLDSRDSNLRGAAARAIAHAI-ESNHSVFGDIISQ 1178
Query: 1172 LFSLYIRDI----------GLGG--DNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTF 1219
L S Y +I G+ D D W R GIALA + ++ + + F
Sbjct: 1179 LQSKYEFEIRPKEPEKDKYGMPKKVDTTDH-WESRSGIALAFGAMQNLFEGDQIVSFLRF 1237
Query: 1220 LISRA-LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LI R L D ++ VR +M ++G +I G++ V L + E L E DL+ E
Sbjct: 1238 LIERGPLIDRSSVVRDQMADSGKGVIAARGQEKVEELMKLLETTLETSDKGSETSDLLNE 1297
Query: 1279 GVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
VV+ G+LA+HL DDP++ V+ +LL L TPSE+VQ AVS CL PL++ ++
Sbjct: 1298 AVVVLYGSLAQHLKSDDPRLQTVIKRLLATLPTPSESVQSAVSDCLPPLIRLAGRQSGKY 1357
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+LDQ+++S Y +RGAA+GLAG+VKG GI +L+++ + L++ ++ +R G
Sbjct: 1358 AQEMLDQILQSKDYATQRGAAYGLAGIVKGRGIVTLREFRVMPHLQDAAENKKEPHKRLG 1417
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKL 1458
AL+A+E LGR +EPYVIQ++P LL +F D S LS+ GVK
Sbjct: 1418 ALMAYELFATILGRTYEPYVIQVVPQLLTSFGDPNADVREACLYTAKACFSNLSSYGVKK 1477
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP+LL+GL+D WR+++ + LLGAMAY PQQL+ LP+I+P LT VL DTH +V++A
Sbjct: 1478 ILPTLLEGLDDTQWRSQKGACDLLGAMAYLDPQQLAVSLPEIIPPLTVVLNDTHKEVRNA 1537
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+LQ+ G VI NPEI SLV LL L+DP T +LD L++ +FV+ +DAPSLAL+V
Sbjct: 1538 ANRSLQRFGEVISNPEIKSLVNVLLKALSDPTKFTDEALDALIKVSFVHYLDAPSLALVV 1597
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
I+ RGL +RSA TK+K+AQI+G++ L TE KD+I ++ +++ + +VDP+P R+
Sbjct: 1598 RILERGLGDRSA-TKRKSAQIIGSLAHL-TERKDLITHLPIIVSGLNLAIVDPVPTTRAT 1655
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698
A++A+GSLI +GE+ PDL+ L+ LKSD +R G+AQ LSEVLA LGT E L
Sbjct: 1656 ASKALGSLIEKLGEDALPDLIPNLMSTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETL 1715
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
P I++N S +A++R+G++TLF YLP G F YL +++P IL GLAD+ +++R+ +L
Sbjct: 1716 PTILQNVSSSKATIREGFMTLFIYLPACFGNSFAPYLGRIIPPILAGLADDVDTIRETSL 1775
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818
AG +LV+++++ ++ LLLP +E G+ +D++RIR SSVEL+GDLLF + G + K E
Sbjct: 1776 RAGRLLVKNFSSKAIDLLLPELERGLADDSYRIRLSSVELVGDLLFSITGITAKT--EAE 1833
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878
+DE A+ +A G++++EVLG ++R++VL+AL++ R D S V+ AA+ VWK++VA+ P+T
Sbjct: 1834 EEDEEAA-QA-GQSLLEVLGEERRDKVLSALFICRCDTSGLVKTAAMGVWKSLVAS-PRT 1890
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSA 1937
LKE++P L +I E++ +A ALG+L++K GE VL +++P L GL+ P
Sbjct: 1891 LKEMVPTLSQLIIRRLGSSNMEQKVIASNALGDLIKKAGESVLATLLPTLEDGLQTSPDV 1950
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+QG+CI L E++AS+ L + LI +R AL D+ +VRE+A AF L + G
Sbjct: 1951 DVKQGICIALKEIIASSSPDALEDYEKILISIVRVALVDNDDDVREAAAEAFDALQQILG 2010
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA--VLPHILPKLVHLPLSAFNAH 2055
+A+D+++P LL L +D+ ++ AL L +L+ +T A +LP+++P L+ P+S FNA
Sbjct: 2011 KKAVDQVLPHLLLLLRNDEDAEQALSALLTLLTEQTRANIILPNLIPTLLTSPISTFNAK 2070
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDXXXXXXX 2113
AL +LAEVAG + L TIL L+ + DD + L +A T+ + +D
Sbjct: 2071 ALASLAEVAGSAMARRLPTILNTLMDNIITCKDDEQRKEL-DDAFSTILVSVDEFDGLNV 2129
Query: 2114 XXXXXKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAA 2172
+ + RR+ +A + F+ ++++ ++I L++ D D V A
Sbjct: 2130 MMSVMLALIKHDDERRRTRAADHLRRFFSDAEIDFSRYHQDLIRVLLISFDDPDKDVVKA 2189
Query: 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLL 2231
AW ALS + + + KE ++V+ ++ T ++ K G P +PGF LPK + +L
Sbjct: 2190 AWGALSGLTSRLRKEE----MEVL--SVPT---RQILKGVGVPGADLPGFSLPKGITAIL 2240
Query: 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
PIFLQGL++GS E R QAAL +G+LI+ T+ SLK FV ITGPLIR++ +R +K A
Sbjct: 2241 PIFLQGLLNGSVEQRTQAALAIGDLIDRTAADSLKLFVTQITGPLIRVVSERSV-DLKCA 2299
Query: 2292 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPL 2350
I TL+ +++K +A+KPFLPQLQ TF + L D T T+R RVDPL
Sbjct: 2300 IFFTLNKLLQKIPLAVKPFLPQLQRTFARGLADQTSETLRNRAAKGLGILITLTPRVDPL 2359
Query: 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 2410
+ +L++ + +D G+R A++ AL+ V+ AG ++S A K + +++ D D V ++
Sbjct: 2360 IAELITGTKTADVGVRNAMMKALQEVVGKAGANMSEASKNSLLALIDDDASDQTDAVAIT 2419
Query: 2411 AASILGIM 2418
A +LG +
Sbjct: 2420 NAKLLGAL 2427
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54WR2 | GCN1L_DICDI | No assigned EC number | 0.3313 | 0.8638 | 0.8515 | yes | no |
| Q92616 | GCN1L_HUMAN | No assigned EC number | 0.3366 | 0.9703 | 0.9550 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00026717001 | SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (2597 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00034459001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (900 aa) | • | • | 0.503 | ||||||
 | GSVIVG00019376001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa) | • | • | 0.482 | ||||||
 | GSVIVG00001918001 | SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa) | • | • | 0.476 | ||||||
 | GSVIVG00025547001 | RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1518 aa) | • | 0.412 | |||||||
 | GSVIVG00006684001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (716 aa) | • | • | • | 0.410 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2629 | |||
| pfam12074 | 329 | pfam12074, DUF3554, Domain of unknown function (DU | 1e-29 | |
| COG5181 | 975 | COG5181, HSH155, U2 snRNP spliceosome subunit [RNA | 2e-08 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 2e-05 | |
| COG1413 | 335 | COG1413, COG1413, FOG: HEAT repeat [Energy product | 5e-05 | |
| pfam01602 | 522 | pfam01602, Adaptin_N, Adaptin N terminal region | 2e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.001 |
| >gnl|CDD|221409 pfam12074, DUF3554, Domain of unknown function (DUF3554) | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 82/354 (23%), Positives = 132/354 (37%), Gaps = 40/354 (11%)
Query: 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKR 405
P Q+ + NAL L S+S +I LL E NE A+LSA
Sbjct: 1 PDQKALIANALSALPVF-------SVSPSIVDGLLPLLSKESNEAALNALLSAFGKHLFF 53
Query: 406 SADIIQSDLLSFFASGLKEKEA-LRRGHLRCLRVICTNTDAVLQ-VSSLLGPLIQLVKTG 463
+ + D++ GL EK+ LR+ L L N A L + L L++++K
Sbjct: 54 LTEEVPDDVVDAIKKGLAEKKPPLRKIWLLSLGEALWNNSASLPLIEDFLPKLLKILKEA 113
Query: 464 FTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPS-LVPTAMIS 517
+ + L G Y L + + K WSLV +PS L+ S
Sbjct: 114 ASNPLPAAQNGTLSGAYVLLSLTPSLSK--------KLIKFWSLVLDPKPSFLLSPKFYS 165
Query: 518 KLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHDATR 575
KLS +D + L L H + E Q + P W++RK A +
Sbjct: 166 KLSDEDLCWVLRALEALFSGHPSELAEDKIA--WGQAWIYVLLSPSLPWEVRKRALQLLK 223
Query: 576 KIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
K+++S P L+ +++ N+L K S + + + S +
Sbjct: 224 KLLSSNPGVLANSIISALWNWLEAHELG---PKESSIESTSLKFLTPVFSALSLALSEKD 280
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVS 688
A +++ ++ +HHP I W L CLR+ G + E+V
Sbjct: 281 SADISIGLEKLLV-SLLVLAHHPLIPIVS-----WIGL--CLRS-GLDPGELVR 325
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with pfam02985. Length = 329 |
| >gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-08
Identities = 128/767 (16%), Positives = 263/767 (34%), Gaps = 124/767 (16%)
Query: 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDP 1935
+++P+LM S ER V + L+ L + +P I+ ++ L D
Sbjct: 205 FNKVLPMLM-----SRELEDQERHLVVK-LIDRLLYGLDDLKVPYVHKILVVVGPLLIDE 258
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
RR C+G E++ + L F + ++R + VR G A + +
Sbjct: 259 DLKRR---CMG-REIILNLVYRCGLGFS---VSSMRPDITSKDEYVRNVTGRAVGVVADA 311
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH------ILPKLV---H 2046
G++ + + L + + + T + +QI + + L H + KL+
Sbjct: 312 LGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS 371
Query: 2047 LPLSAFNAHALGALAEVAGP---------------GLNFHLGTILPALLSAMGD--DDMD 2089
+ A+AL LAE+ GP G + H G L + L AMG M
Sbjct: 372 RFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS 431
Query: 2090 VQSLAKEAAETVTLVI------DEEG-------------VESLVSELL-----------K 2119
+ + E + +V DEE V + L
Sbjct: 432 PEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF 491
Query: 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
A RRS ++ L + P + ++ SD +SR
Sbjct: 492 WR-RRSAGDRRSYKQVV---LTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSR 547
Query: 2180 VVASVPK-EVQPSYIKVIRDAI------STSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232
+ + + + + + D+I + ++ F L ++
Sbjct: 548 IFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVS 607
Query: 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 2292
L+ L S ++R +AA +G L +V + + + L +G+ +P + S +
Sbjct: 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSIL 667
Query: 2293 LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDP-- 2349
+ SI +++P + + + L++ + V ++ +G + S +
Sbjct: 668 KAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE 727
Query: 2350 ---LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ +L+ SL+ + IR + + G V +L + + +
Sbjct: 728 WMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNLKVQERQ 780
Query: 2407 VRVSAASILGIMSQ-CMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR--HNPS- 2462
RV + + I+++ C +L L++ +P ++G + S
Sbjct: 781 QRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836
Query: 2463 --AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV---VDI 2517
S++PL L+ +L D R+ + ++ + T + +
Sbjct: 837 DYVYSITPL-------LEDALTD-----RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHL 884
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKA-NPSAIMVHV--ALFGPA 2561
L + + + S V + ++S A A+M +V LF P+
Sbjct: 885 LNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPS 931
|
Length = 975 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340
W+V+ A L + G L+P +P+L + L+D VR +AA ALG++
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 5e-05
Identities = 62/279 (22%), Positives = 102/279 (36%), Gaps = 50/279 (17%)
Query: 2276 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAAL 2335
L++++ D V+ + L G + + +P L + L D VR +AA
Sbjct: 48 LLKLLEDE-DLLVRLSAAVAL------GELGSEEAVPLL----RELLSDEDPRVRDAAAD 96
Query: 2336 ALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV-LKHAGKSVSSAVKIRVYS 2394
ALG+L V PLV L + + G+R A AL + + A + A++
Sbjct: 97 ALGEL-GDPEAVPPLVELLENDE---NEGVRAAAARALGKLGDERALDPLLEALQDEDSG 152
Query: 2395 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS--PSWAARHGSVLV 2452
+ VR +AA LG + D + LL ELL + AA S L
Sbjct: 153 SAAAALDAALLDVRAAAAEALG----ELGDPEAIPLLIELLEDEDADVRRAAA---SALG 205
Query: 2453 FATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTT 2512
D L +L DE +R+A+ ALG + +
Sbjct: 206 QLGSENVE------------AADLLVKALSDESLEVRKAALLALGEIGDEE--------- 244
Query: 2513 VVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI 2551
+ ++ AL D+ + A +AL ++ A +
Sbjct: 245 ----AVDALAKALEDEDVILALLAAAALGALDLAEAALP 279
|
Length = 335 |
| >gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-04
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-ASI 2128
HL I+ L + DDD+ + A + + ++DE V+ +V ELLK V +
Sbjct: 301 QHLDLIIFCLKT---DDDISI---RLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEF 354
Query: 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
+ IG + +A I L+ LLS + S V E + ++ P
Sbjct: 355 KIKLVKAIGRLAEKF----PTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYP 407
|
This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSS 2530
L L S L ++ + AL L N VV+ L ++V L +
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAG----NNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 2531 EVRRRALSALKSVAKANPS-AIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
EV + AL AL+++A ++V A P L L + ++ A
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2629 | |||
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.97 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.97 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.96 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.93 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.92 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.91 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.9 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.89 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.87 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.85 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.81 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.65 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.58 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.43 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.42 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.38 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.36 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.25 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.25 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.23 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.22 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.17 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.16 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 99.09 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.07 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 99.04 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.81 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.81 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.81 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.75 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.74 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.73 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.69 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.68 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.68 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.67 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.66 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.65 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.62 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.59 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.59 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.59 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.56 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.55 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.53 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.5 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 98.5 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.46 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.45 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.4 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.37 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.37 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 98.35 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 98.35 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.34 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.33 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.28 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.28 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.27 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.25 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.22 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.22 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 98.21 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.18 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.14 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.13 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.1 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.08 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.05 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.01 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 97.89 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.83 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.81 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 97.8 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.76 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.74 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.71 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.71 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.7 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.69 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.68 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.67 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.65 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.65 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.62 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.61 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.58 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 97.57 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.55 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 97.49 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.45 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.45 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.44 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 97.41 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.33 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.31 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.26 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.21 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 97.13 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 97.12 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.05 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.05 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.05 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.0 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.0 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.99 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.98 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.96 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.95 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.93 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.91 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.82 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.79 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.79 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.7 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.65 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.62 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 96.58 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 96.57 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.5 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.41 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.39 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 96.37 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.34 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.25 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.19 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.87 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.86 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.82 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.8 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.8 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.78 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.73 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.58 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.42 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 95.29 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.26 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.21 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.21 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.17 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.16 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.95 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 94.93 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 94.87 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.85 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 94.81 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 94.8 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.76 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 94.73 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 94.71 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 94.61 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 94.6 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.58 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.53 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.52 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 94.45 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 94.17 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 93.82 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 93.64 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 93.61 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 93.47 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 93.39 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 93.31 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 93.29 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 93.09 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 92.93 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 92.72 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 92.57 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 92.32 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 92.29 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 92.29 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 92.07 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 91.93 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 91.76 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 91.55 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 91.23 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 91.01 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 90.93 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 90.92 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 90.81 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 90.79 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 90.64 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 90.32 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 90.29 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 90.27 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 89.31 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 89.27 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 89.07 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 88.61 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 88.52 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 88.45 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 88.32 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 88.21 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 88.05 | |
| COG5234 | 993 | CIN1 Beta-tubulin folding cofactor D [Posttranslat | 88.04 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 88.03 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 87.22 | |
| KOG1837 | 1621 | consensus Uncharacterized conserved protein [Funct | 87.17 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 87.12 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 86.61 | |
| COG5234 | 993 | CIN1 Beta-tubulin folding cofactor D [Posttranslat | 86.39 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 86.35 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 86.31 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 86.26 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 85.45 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 85.36 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 85.13 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 85.06 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 84.68 | |
| PF12726 | 727 | SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y | 84.58 | |
| KOG1823 | 1364 | consensus DRIM (Down-regulated in metastasis)-like | 84.54 | |
| KOG3961 | 262 | consensus Uncharacterized conserved protein [Funct | 84.38 | |
| KOG1837 | 1621 | consensus Uncharacterized conserved protein [Funct | 83.93 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 83.85 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 82.76 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 82.53 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 82.26 | |
| KOG2213 | 460 | consensus Apoptosis inhibitor 5/fibroblast growth | 82.22 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 81.03 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 80.78 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 80.62 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.51 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 80.17 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 80.12 |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=530.78 Aligned_cols=557 Identities=50% Similarity=0.759 Sum_probs=521.4
Q ss_pred hhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHH
Q 000049 1205 ADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFT 1284 (2629)
Q Consensus 1205 ~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~ 1284 (2629)
...+...+...++.|++..| .|+...||..|++|+...+..||.+.+..++|.|++.+++. .++.+|++.++++
T Consensus 7 ~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-----~~~~~~~~~~v~~ 80 (569)
T KOG1242|consen 7 KKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-----HNDNLRNNVVVLE 80 (569)
T ss_pred HHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-----hhHHHhhhhHHHH
Confidence 33333344444577887766 99999999999999999999999999999999999999873 2788999999999
Q ss_pred HHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000049 1285 GALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364 (2629)
Q Consensus 1285 ~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~ 1364 (2629)
|.+++|+...|++...+++.+++.+.+|++.||++++.|++++...........+..++..+.+..+...|++|++++++
T Consensus 81 ~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag 160 (569)
T KOG1242|consen 81 GTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAG 160 (569)
T ss_pred HHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999998877666655555555555557788999999999999
Q ss_pred HHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000049 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2629)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2629)
++++.|...+...+++..+.+.+.++++...|++++.++...+..+|..++||+..++|.++.+++|..+.||++|..+.
T Consensus 161 ~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ 240 (569)
T KOG1242|consen 161 LVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAA 240 (569)
T ss_pred HHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHH
Confidence 99999999998889999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2629)
+.++..+++++++.++|.++..+.+..||++.++++++|.|++++|++++.++++++|.+.+.+.|++++||+++.+||.
T Consensus 241 kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 241 KAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLL 320 (569)
T ss_pred HHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000049 1525 QVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2629)
Q Consensus 1525 ~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~ 1604 (2629)
.+++.+.|++|+.++|.|++++.||+.++.+|++.++.++|++++++++++.++|++.+++.+++..+++.++.+++|||
T Consensus 321 ~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 321 KFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000049 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2629)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~ 1684 (2629)
..+.+++++.||++.++|.+...+.|+.|++|..+++++|.+.+.+|+..+++.+|++.+.+.++.....|.++++.+++
T Consensus 401 ~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~e 480 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSE 480 (569)
T ss_pred HhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHH
Confidence 99989999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHhhChhHHHhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHH
Q 000049 1685 VLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2629)
Q Consensus 1685 i~~~~g~~~l~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2629)
++..+|.+....++|.+....... ++.+|++.+.++..++..+|..|.+|+.++++.+++.+.|.++.+|..+.++..
T Consensus 481 vl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~ 560 (569)
T KOG1242|consen 481 VLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGE 560 (569)
T ss_pred HHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhh
Confidence 999999999999999999887664 677999999999999999999999999999999999999999999999988876
Q ss_pred HHHHH
Q 000049 1763 VLVEH 1767 (2629)
Q Consensus 1763 ~iv~~ 1767 (2629)
.++.+
T Consensus 561 ~~~~~ 565 (569)
T KOG1242|consen 561 VEVLN 565 (569)
T ss_pred hhhcc
Confidence 65544
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=463.25 Aligned_cols=1006 Identities=17% Similarity=0.198 Sum_probs=724.2
Q ss_pred ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH----HHHHHHHhc--ccc-ccC
Q 000049 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQT--TFV-NTV 1569 (2629)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r----~al~~L~~~--~~~-~~~ 1569 (2629)
.++++..++++|.|.+++|+..|++|++.+++.+++..++.++..|+..+-...+..| -++.+.+.. .++ ...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 4678899999999999999999999999999999988899999999988766656555 244444331 111 233
Q ss_pred ChhhhhhHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1570 DAPSLALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d--~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
.+.....+.|.+..++.. ....++-.++++++.+...+|+ -+.++...++..+...+..+...||+.|..+||.++
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~--ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT--LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 445566777777777643 3456888999999988887765 455677778888888888899999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhh---cCCChhhHHHHHHHHH
Q 000049 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNC---SHQRASVRDGYLTLFK 1721 (2629)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l---~~~~~~vR~~a~~~l~ 1721 (2629)
...+.+.+..++..|++.|.+.......+..+++++.++++.|.. +.+.++|.+.+.+ +..+.++|+.++++++
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999988999999999999987766656667889999999999976 4578899999888 5678999999999999
Q ss_pred HhhhhhccchHhhHHhHHHHHHhhcCCCCh----------------------------------hHHHHHHHHHHHHHHH
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENE----------------------------------SVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~----------------------------------~VR~~al~al~~iv~~ 1767 (2629)
.+...++.+..||.+.++..++++++.+.. .||.+|.+++..++..
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999873211 1455555555444432
Q ss_pred hhh---chhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcc---cHHHHHHHHHHHhchhh
Q 000049 1768 YAT---TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGA---STEAHGRAIIEVLGRDK 1841 (2629)
Q Consensus 1768 ~~~---~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~---~~~~~~~~l~~~Lg~e~ 1841 (2629)
-.+ .....+-|.+....++-...++...+...-.++.+.+.... ...|+|.. +.......+.+ .
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~-----~~~d~d~~e~~g~~s~~~~L~~-----~ 432 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIE-----VLADNDAMEQGGTPSDLSMLSD-----Q 432 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcc-----cccCchhhhccCCccchHHHHh-----h
Confidence 111 11112333344444444444444444444444444322211 00110100 00000001111 1
Q ss_pred HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhccc
Q 000049 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGER 1919 (2629)
Q Consensus 1842 ~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~--~~~R~~A~~~L~~lv~~~~~~ 1919 (2629)
...++.++-..+.+.+...|..++..+..++...|..+.++++.++|.++..++|.+ ...+..+...+.......++.
T Consensus 433 ~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 433 VPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred hHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 123444444444566666899999999999999999999999999999999999654 467777777776666555543
Q ss_pred ----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch------hhHHHhHHHHHHHHHHHh--cCCcHHHHHHHHH
Q 000049 1920 ----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGL 1987 (2629)
Q Consensus 1920 ----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~ 1987 (2629)
..+.+.|++.....++-+.+-..+.....+++....+ -...+|..+++....+.+ +|.|.+||+.|+.
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIs 592 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAIS 592 (1233)
T ss_pred hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4677788888889999988887777666666554432 345778888888888766 4789999999999
Q ss_pred HHHHHHHHhChhh---hhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHH-H
Q 000049 1988 AFSTLFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAE-V 2063 (2629)
Q Consensus 1988 al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~-~ 2063 (2629)
++|++...+|... ...++|.+++.|+++.++-.|. +|+.-|+. .
T Consensus 593 cmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~Av--------------------------------kAlt~Ia~S~ 640 (1233)
T KOG1824|consen 593 CMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAV--------------------------------KALTLIAMSP 640 (1233)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHH--------------------------------HHHHHHHhcc
Confidence 9999999888532 3445667777777665543333 34433332 1
Q ss_pred hCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000049 2064 AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2629)
Q Consensus 2064 ~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l 2139 (2629)
..-++.+.+..+++.+.+++.......|.....++..++.+++. ..+..++.++...+.+.+.++-+.|..++..+
T Consensus 641 l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl 720 (1233)
T KOG1824|consen 641 LDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTL 720 (1233)
T ss_pred ceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 23346678889999999999888888999999999999887753 34777888888888888899999999999999
Q ss_pred HHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc---ccccchHHHHHHHHhhhhhhhhhhhcCCcc
Q 000049 2140 YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK---EVQPSYIKVIRDAISTSRDKERRKKKGGPI 2216 (2629)
Q Consensus 2140 ~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~---~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~ 2216 (2629)
+...+..+......++..++.++..+- +...|..++-.++...-. ..++ +.. +...+...
T Consensus 721 ~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~-y~~-l~s~lt~P------------- 783 (1233)
T KOG1824|consen 721 AIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLD-YIS-LLSLLTAP------------- 783 (1233)
T ss_pred HhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCcc-HHH-HHHHHcCC-------------
Confidence 888777777778888999999887653 333344433333322111 1111 111 11111100
Q ss_pred cccCCCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHh-cCCCCHhHHHHHHH
Q 000049 2217 LIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII-GDRFPWQVKSAILS 2294 (2629)
Q Consensus 2217 ~l~g~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l-~~~~~~~vk~~al~ 2294 (2629)
+.+. ...+ ........+.|.+.++..++ +.-++. +..|+.-+ ..+.+..+|..++.
T Consensus 784 -V~~~----------------~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~----a~kl~~~~~s~~s~~~ikvfa~L 841 (1233)
T KOG1824|consen 784 -VYEQ----------------VTDGLHKQAYYSIAKCVAALTCACP-QKSKSL----ATKLIQDLQSPKSSDSIKVFALL 841 (1233)
T ss_pred -cccc----------------cccchhHHHHHHHHHHHHHHHHhcc-ccchhH----HHHHHHHHhCCCCchhHHHHHHh
Confidence 0000 0001 11223345777777777776 323333 33333333 34457889999999
Q ss_pred HHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 000049 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALK 2374 (2629)
Q Consensus 2295 ~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~ 2374 (2629)
+||++++..+.. ..+.+..+++++++.++++|+.+|+.|||.+.. ++++.|+|+++..+.. ++.-++..+++|+
T Consensus 842 slGElgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlk 915 (1233)
T KOG1824|consen 842 SLGELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLK 915 (1233)
T ss_pred hhhhhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHH
Confidence 999999876653 335566799999999999999999999999866 7889999999999865 5778899999999
Q ss_pred HHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHH----------------------
Q 000049 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQ---------------------- 2432 (2629)
Q Consensus 2375 ~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~---------------------- 2432 (2629)
+++.........++++.||.+|++.+...++++|+.+|+|||.|+.+-|+ .+-+-++
T Consensus 916 evi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-sLlpkL~~~~~S~a~~~rs~vvsavKfsi 994 (1233)
T KOG1824|consen 916 EVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-SLLPKLKLLLRSEASNTRSSVVSAVKFSI 994 (1233)
T ss_pred HHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-HHHHHHHHHhcCCCcchhhhhhheeeeee
Confidence 99998777666799999999999999999999999999999999987774 2222222
Q ss_pred ----------------HHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHH------------------
Q 000049 2433 ----------------ELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK------------------ 2478 (2629)
Q Consensus 2433 ----------------~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~------------------ 2478 (2629)
.++..+.+++..+|+-+..+++.+..+-|.-+ .++.+++++.+.
T Consensus 995 sd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI--rDllpeLLp~Ly~eTkvrkelIreVeMGPF 1072 (1233)
T KOG1824|consen 995 SDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI--RDLLPELLPLLYSETKVRKELIREVEMGPF 1072 (1233)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCc
Confidence 22333345566666666667777776666544 245566666655
Q ss_pred hhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHH
Q 000049 2479 SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALF 2558 (2629)
Q Consensus 2479 ~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l 2558 (2629)
+|..|++..+|++|.+||..++..|..+ .++.+|+..+..|+.|+ .|+|.+++.++..+|..+|..|.+.+|.+
T Consensus 1073 KH~VDdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l 1146 (1233)
T KOG1824|consen 1073 KHTVDDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRL 1146 (1233)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 5567888899999999999999998765 46899999999999886 89999999999999999999999999999
Q ss_pred HHHHHhhhc------------CCcchhhhhHHHHHHHHhccccCchhHHHHHHHh
Q 000049 2559 GPALAECLK------------DGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601 (2629)
Q Consensus 2559 ~p~l~~~~~------------~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l 2601 (2629)
+.+|.+.+. +++...|++|.||+.+++++++-+.++ .+.+|.
T Consensus 1147 ~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v~~np-~~~df~ 1200 (1233)
T KOG1824|consen 1147 VEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEVEKNP-QFSDFE 1200 (1233)
T ss_pred HHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcccccccCh-HHHHHH
Confidence 999998752 244556888889999999998877665 445554
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=465.87 Aligned_cols=905 Identities=17% Similarity=0.192 Sum_probs=638.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCCCC
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~~~ 1128 (2629)
..+.+|+++++|||+.+|++|+++|++.+... + .......+..+..+++.|++|. ++|...+.++
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46899999999999999999999999988542 1 2223334566777788777753 5799988888
Q ss_pred CCCh-HhHHHhhcC-CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhh
Q 000049 1129 GTDY-SGLFKALSH-SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2629)
Q Consensus 1129 ~~~~-~~Ll~~l~~-~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~ 1205 (2629)
++++ ..||..+.+ +.+.||++.|+++|+++. ..|+.|+++++.++++.. + .+-..|+.+.+.|..++
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----S------~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----S------PNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----C------CCcchhHHHHHHHHhhh
Confidence 8888 778876555 688999999999999976 456789999999998842 1 22379999999999999
Q ss_pred hhcCCCChh---HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC--cc---chhhhHHHHHHHhcc--cCCChhhhhh
Q 000049 1206 DVLRTKDLP---VIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNK--KASDEEKYDL 1275 (2629)
Q Consensus 1206 ~~~~~~~~~---~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g--~~---~~~~Ll~~~~~~l~~--~~~~~~~~~~ 1275 (2629)
..+++...+ .+...| .++++|++..||..+++|..+++.... +. .+..++|.+-..+.. +..++...+.
T Consensus 147 ~~~~~~~~~~~~~l~~lf-~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLF-SQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhccccchhHHHHHHHH-HHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 999987765 344433 689999988899999999999998875 22 244666633333322 1121112233
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCC--cHHHHHHHHHhhhhhHhhhcc---c----hHHHHHHHHHHh
Q 000049 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQD---E----APTLVSRLLDQL 1346 (2629)
Q Consensus 1276 vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~l~~~~~~---~----~~~ll~~ll~~L 1346 (2629)
+-+...++.....+.+ .+.+..|+...++..++. ++.+|..+.+++..+...... . ...+++.++..+
T Consensus 226 ~l~~l~El~e~~pk~l---~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 226 ALEALIELLESEPKLL---RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred HHHHHHHHHhhchHHH---HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 3333333333333333 456778888887777765 578999999988777765211 1 234555555555
Q ss_pred hcCC--------------C-HHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 000049 1347 MKSD--------------K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2629)
Q Consensus 1347 ~~~~--------------~-~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~ 1411 (2629)
++.. + ....+.|.++|+.++.++|++.+.+ .+++.+..++++. +|..|++|+++++.+++|++
T Consensus 303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p-~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~ 380 (1075)
T KOG2171|consen 303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP-PLFEALEAMLQST-EWKERHAALLALSVIAEGCS 380 (1075)
T ss_pred CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH
Confidence 4311 1 2356789999999999999988854 7999999999998 89999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhhccC-ChhhhHHHHHHHHHHH
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMA 1486 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la 1486 (2629)
+.+.+.+.++++.++.++.|++|.||.+|+.+++++...+.++. ...++|.++..+++. +.++..+|+.++..+.
T Consensus 381 ~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 381 DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888763 356677788888774 5688888888887777
Q ss_pred hh-CchhhhhhccchHH-HHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHH
Q 000049 1487 YC-APQQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2629)
Q Consensus 1487 ~~-~p~~l~~~L~~ivp-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~ 1561 (2629)
+. .+..+.+||+.++. .+..+++...+.||+.+..+|+.++...++ ||++.++|.|.+.+...+..
T Consensus 461 E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~--------- 531 (1075)
T KOG2171|consen 461 EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK--------- 531 (1075)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch---------
Confidence 64 55678999999999 555556677899999999999999988775 67888899888887655421
Q ss_pred hccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHH---hcCCCHHHHHH
Q 000049 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSV 1638 (2629)
Q Consensus 1562 ~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~---L~d~~~~VR~~ 1638 (2629)
.....|.+..++++.++..+|. +.|.|+...++..+... ..+.+...|..
T Consensus 532 --------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 532 --------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred --------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 0125677778888888888765 67889999999988887 44456678899
Q ss_pred HHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHH
Q 000049 1639 AARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1639 A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
.+.+++.+++.+|++ +++.++|.++.+.+.+.....--. ....+....-|-+.. ++=..=.-.+...--.-|+.
T Consensus 585 ~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~ 661 (1075)
T KOG2171|consen 585 MIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--EDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKET 661 (1075)
T ss_pred HHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hhhhhccccccchhh-ccCCceeeeeeehhHHHHHH
Confidence 999999999999987 567788888877665432210000 000000000000000 00000000011123345789
Q ss_pred HHHHHHHhhhhhccchHhhHHhHHHHHHh-hcCCCChhHHHHHHHHHHHHHHHhhh----------chhhhHHHHHhhcc
Q 000049 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLADENESVRDAALGAGHVLVEHYAT----------TSLPLLLPAVEDGI 1784 (2629)
Q Consensus 1716 a~~~l~~L~~~~g~~f~p~l~~ii~~ll~-~L~d~~~~VR~~al~al~~iv~~~~~----------~~i~~llp~l~~~l 1784 (2629)
++.+++.++...+..|.||++++++..+. ..-+.++.||.+|..++..++...-. ..+..+.|.+...+
T Consensus 662 A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l 741 (1075)
T KOG2171|consen 662 ACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKAL 741 (1075)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999984443 44477889999999999988765422 12344667777777
Q ss_pred CCCchH-HHHHHHHHHHHHHHhhcCCCccccccCCCCCCccc-HHHHHHHHHHHhc-------hhhHHHHHHHHHhhccC
Q 000049 1785 FNDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS-TEAHGRAIIEVLG-------RDKRNEVLAALYMVRSD 1855 (2629)
Q Consensus 1785 ~d~~~~-vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~-~~~~~~~l~~~Lg-------~e~~~~vl~~L~~~~~D 1855 (2629)
.++... +-.+.++.++..+...+... ..++.... .......+..... .+.-.+....-.....+
T Consensus 742 ~~E~e~~vl~~vl~~f~~~i~~~G~~~-------L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e 814 (1075)
T KOG2171|consen 742 EEEPETEVLSEILESFAECIEVMGDNC-------LNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDE 814 (1075)
T ss_pred hcCCcHHHHHHHHHHHHHHHHhcCccc-------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhh
Confidence 666554 55556666666665543221 00100000 0000000000000 00000000000000113
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhc
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGL 1932 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L 1932 (2629)
.+...-..+.+++..++...+..+.+.+..+.|.+++.+.+.....|.+|..++++++..+|+. +.+.++|.+...+
T Consensus 815 ~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~ 894 (1075)
T KOG2171|consen 815 QDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEAL 894 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHc
Confidence 3445667778888899998899999999999999999999877766999999999999999876 5678999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHHHHHhChh-hhhhhH
Q 000049 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL------EVRESAGLAFSTLFKSAGMQ-AIDEIV 2005 (2629)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~------~VR~~A~~al~~l~~~~g~~-~~~~il 2005 (2629)
.|++|+||+++.+++|.+. .+++..+.+.+...+|.+...+..++. ..+++|+.|++.++.+.... .+++++
T Consensus 895 ~d~~pEVRqaAsYGiGvla-q~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl 973 (1075)
T KOG2171|consen 895 QDSDPEVRQAAAYGMGVLA-QFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVL 973 (1075)
T ss_pred CCCCHHHHHHHHHHHHHHH-HHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHH
Confidence 9999999999999999664 455666777788888888887766543 36777888999888765532 278999
Q ss_pred HHHHHhccCc---CchhHHHHHHHHHHhh
Q 000049 2006 PTLLHALEDD---QTSDTALDGLKQILSV 2031 (2629)
Q Consensus 2006 p~Ll~~L~~~---~~~~~aL~~L~~il~~ 2031 (2629)
|.|+..|-.. +......+-+..++..
T Consensus 974 ~~~l~~LPl~~D~eEa~~iy~~l~~L~e~ 1002 (1075)
T KOG2171|consen 974 PAWLSWLPLKEDKEEAVPIYTFLSDLYES 1002 (1075)
T ss_pred HHHHHhCCCccchhhhhhHHHHHHHHHHh
Confidence 9999998432 2333445555555543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=435.34 Aligned_cols=866 Identities=18% Similarity=0.223 Sum_probs=617.5
Q ss_pred ChHhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000049 1131 DYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2629)
Q Consensus 1131 ~~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~--- 1207 (2629)
.+..|+..|.++|+.+|+.|.+++......-+ ++..|... ... ..+-++|+.+++-++.++..
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-----~l~~L~~i-~~~--------~~~p~~Rq~aaVl~Rkl~~~~w~ 70 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-----LLPALAHI-LAT--------SADPQVRQLAAVLLRKLLTKHWS 70 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-----hHHHHHHH-Hhc--------CCChHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999975543333 22333322 111 12227999999999998753
Q ss_pred -cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHH
Q 000049 1208 -LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGA 1286 (2629)
Q Consensus 1208 -~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~ 1286 (2629)
+..+...++..-++...+.++.+.||.+..+++.++.+....+.|+++++.+.++.++++ ...||+++.++..
T Consensus 71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s 144 (1075)
T KOG2171|consen 71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSS 144 (1075)
T ss_pred cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHh
Confidence 233333456666655667899999999999999999998877799999999888887643 4589999999999
Q ss_pred HHhhhccC-CCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhcc------chHHHHHHHHHHhhcC---CCHHHHH
Q 000049 1287 LAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKS---DKYGERR 1356 (2629)
Q Consensus 1287 La~~l~~~-~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~------~~~~ll~~ll~~L~~~---~~~~~R~ 1356 (2629)
+...++.. .+++..+...+.+++.|++..||..+++++..++..... ....++|.++..+.+. ++...-.
T Consensus 145 ~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred hhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 99888665 468899999999999999988999999999988877641 2356788887777543 2333445
Q ss_pred HHHHHHHHHHhhhCcchhhh--hcHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHcC
Q 000049 1357 GAAFGLAGVVKGFGISSLKK--YGIAATLREGLADR-NSAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFS 1430 (2629)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~l~~~-~~~~~R~~Al~al~~La~~~~---~~~~~~v~~ilp~ll~~l~ 1430 (2629)
.+..+|..++...+. .+.+ ..++.+..+.+.++ .+...|+.|+..+.++++..+ +...+|...+++.++..+.
T Consensus 225 ~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 225 SALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 566666666654332 2221 15666666666554 378899999999999999855 5566788899999998875
Q ss_pred CCC----------------HHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1431 DQV----------------VAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1431 D~~----------------~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
|.. ..-...|..++..++..+++..+ ..+++.+-..+.+.+|+.|++++.+|+.+++++++++
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 421 12345678899999999987754 6777777788999999999999999999999999999
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~ 1573 (2629)
...+++|++.+++.++|+||+||.+|+.|+|++...+. |+++. .+
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~ 428 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KH 428 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HH
Confidence 99999999999999999999999999999999998776 33211 11
Q ss_pred hhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000049 1574 LALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1574 l~~i~p~L~~~L~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~-~L~~~L~d~~~~VR~~A~~aL~~l~~~~g 1651 (2629)
...+.|.|...+.+. +.++..+|+.++-++.... ..+.+.||++.+|. .+..+++.+.+.||+.+..+||+++.+.+
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 222333444444443 4688888888888887753 33578999999999 66666778899999999999999999999
Q ss_pred CC---CchhhHHHHHHHhccCCC---hHHHHHHHHHHHHHHHhhChhHHH----hHhHHHHHh---hcCCChhhHHHHHH
Q 000049 1652 EE---NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAALGTVYFE----HILPDIIRN---CSHQRASVRDGYLT 1718 (2629)
Q Consensus 1652 ~~---~~~~ll~~Ll~~L~~~~~---~~~R~~a~~~L~~i~~~~g~~~l~----~llp~l~~~---l~~~~~~vR~~a~~ 1718 (2629)
+. |++.+||.|...+.+... ...|-....+++.+..++|++.|. +++..+... ..+.+...|...+.
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 76 789999999999986542 234556788999999999998764 444444444 33457788999999
Q ss_pred HHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHH
Q 000049 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~l 1798 (2629)
.++.+|+.+|++|.||++.++|+++....-..+..- .... ..++.-+++.|....
T Consensus 588 ~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-------------~d~~-------d~e~~~~~~~~e~~~----- 642 (1075)
T KOG2171|consen 588 FWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-------------SDEE-------DEEEEQDLDGWEVVE----- 642 (1075)
T ss_pred HHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-------------cCch-------hhhhccccccchhhc-----
Confidence 999999999999999999999999987653221100 0000 000000111221100
Q ss_pred HHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhh
Q 000049 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2629)
Q Consensus 1799 l~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2629)
..+.+. .| ..-....-+..|+..++.++......
T Consensus 643 -------------------~~~~e~-------------~~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~ 676 (1075)
T KOG2171|consen 643 -------------------LGDKEN-------------IG--------------IRTSVLDEKETACEALGEYAKELKEA 676 (1075)
T ss_pred -------------------cCCcee-------------ee--------------eeehhHHHHHHHHHHHHHHHHhhhhh
Confidence 000000 00 01111234678899999999999999
Q ss_pred HhhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhc------cc----hhhhHHHHHhhhcC-CCChhHHHHHHHH
Q 000049 1879 LKEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLG------ER----VLPSIIPILSRGLK-DPSASRRQGVCIG 1946 (2629)
Q Consensus 1879 l~~~l~~Ll~~L~~~L-~~~~~~~R~~A~~~L~~lv~~~~------~~----~l~~llp~L~~~L~-d~~~~vR~~a~~a 1946 (2629)
|.+|+...++..+..+ -..+..+|.+|+.++..+++..- +. .+..+.|.+...+. .+++++......+
T Consensus 677 F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~ 756 (1075)
T KOG2171|consen 677 FAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILES 756 (1075)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 9999999888433333 36788999999999998876542 21 34566666666665 4678899999999
Q ss_pred HHHHHHhhchhhH-HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHH
Q 000049 1947 LSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 2025 (2629)
Q Consensus 1947 L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L 2025 (2629)
+++.++.+|...+ .++...++..+...+.+...+.+..-.+... .. .+.--...+ . +.+.+.++
T Consensus 757 f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~e------ed--~d~~eee~~---~--e~d~~ll~-- 821 (1075)
T KOG2171|consen 757 FAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDE------ED--DDIEEEEDL---D--EQDAYLLD-- 821 (1075)
T ss_pred HHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hh--hhhHHHHHH---h--hhhHHHHH--
Confidence 9999988886443 3334444444333322211111111000000 00 000000000 0 00111111
Q ss_pred HHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 000049 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105 (2629)
Q Consensus 2026 ~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~ 2105 (2629)
.....+.+++...+.+|.|++..+.|.++..+....+.-|+.+..+++.++..+
T Consensus 822 --------------------------~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~ 875 (1075)
T KOG2171|consen 822 --------------------------AISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGC 875 (1075)
T ss_pred --------------------------HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 123456777788899999999999999999998777666999999999999988
Q ss_pred cc---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCC
Q 000049 2106 DE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165 (2629)
Q Consensus 2106 ~~---~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~ 2165 (2629)
++ .+...+++.++..+.|.+|.||++|.+.+|.+++..+.+|.+.....++.|...++.+
T Consensus 876 ~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~ 938 (1075)
T KOG2171|consen 876 GEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPP 938 (1075)
T ss_pred ccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcCh
Confidence 75 4578899999999999999999999999999999999888777777777777666543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=367.79 Aligned_cols=1068 Identities=18% Similarity=0.217 Sum_probs=716.0
Q ss_pred CCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch
Q 000049 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2629)
Q Consensus 1295 ~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2629)
+...+.++..+++.|.|.+++||..+.+|+++++.++++. ...+++.++..+.... .+.|..++.+|..++..++|..
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccch-hhhccHHHHHHHHHHhcCCCcc
Confidence 3445678899999999999999999999999999988775 4678888888876554 4889999999999998887621
Q ss_pred h---h---hhcHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000049 1374 L---K---KYGIAATLREGLADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2629)
Q Consensus 1374 l---~---~~~i~~~L~~~l~~~~-~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2629)
- . ...+.+.+.+.+.... ....+-.++..++.+...+|..+.++...++..++..++.+...||+.|..+++.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 1 1 1246667777765432 3346767777777777788888888888899999999999999999999999999
Q ss_pred HHHhhcHHhHHhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhh---cCCCHHHHHHHHHH
Q 000049 1447 MMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTA 1522 (2629)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L---~D~~~~VR~aA~~a 1522 (2629)
++...+.+.+..++..++++|... +...-+..+.+|++++..+...+..+++.++|.+.+++ +..+.+.|+.+.++
T Consensus 201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 999999999999999999999764 45556678999999999999999999999999999999 66688999999999
Q ss_pred HHHHhhhcCc---hhHHhHHHHHHhcc-CCCChhHH--H-H-HHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHH
Q 000049 1523 LQQVGSVIKN---PEIASLVPTLLMGL-TDPNDHTK--Y-S-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2629)
Q Consensus 1523 L~~l~~~~~~---~~i~~lvp~Ll~~l-~d~~~~~r--~-a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~ 1594 (2629)
++.|....+. |++.+++..+++.+ .||+.... + . -+.+-........+ .+ .-=+|-+|.||+
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~d-eY---------sDDeD~SWkVRR 350 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDD-EY---------SDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcc-cc---------ccccchhHHHHH
Confidence 9999987653 45577777777766 47754211 0 0 00000000000000 00 001234899999
Q ss_pred HHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH--HhccCCCh
Q 000049 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSN 1672 (2629)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~--~L~~~~~~ 1672 (2629)
+|+.++..+.. +..+.+..++..+-|.+...+++....|+...+.++-.+....+. ..+++.+ ........
T Consensus 351 aAaKcl~a~Is--SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 351 AAAKCLEAVIS--SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTP 423 (1233)
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCc
Confidence 99999998876 333455667788889999999999999999999998888775542 1222210 00000000
Q ss_pred HHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC--
Q 000049 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-- 1750 (2629)
Q Consensus 1673 ~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-- 1750 (2629)
..+....+... .++..+-+.+.+..-..|.+++..+..+...+++...+|++.++|.+...+.|.+
T Consensus 424 s~~~~L~~~~~------------~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 424 SDLSMLSDQVP------------LIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cchHHHHhhhH------------HHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 01111111111 2222333334445555889999999999999999999999999999999999865
Q ss_pred hhHHHHHHHHHHHHHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccH
Q 000049 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~ 1826 (2629)
...+..++..+...+...+.+ .++.+.|.+.....|..+++-..++-..+.++..+.+...+..+ +...+
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~----d~~~~-- 565 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSF----DASPY-- 565 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccC----CCChh--
Confidence 345666666666666555554 34567888888999999999999998888888766443221111 10111
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHH
Q 000049 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2629)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~ 1906 (2629)
+.+.+. -.+..+ ...|.+.+||+.|+.+++.++.+++..+...+|..++.+++++. ++-+|..|+
T Consensus 566 --v~~m~~---------~tl~rL--~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Av 630 (1233)
T KOG1824|consen 566 --VKTMYD---------CTLQRL--KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAV 630 (1233)
T ss_pred --HHHHHH---------HHHHHH--hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHH
Confidence 111111 111111 23788899999999999999999999899999999999999996 567899999
Q ss_pred HHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHH
Q 000049 1907 RALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2629)
Q Consensus 1907 ~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2629)
+++..++...- ..++..++|.+...++......|.+...++-.++...+...-...+..++..+-..+.+.|-.+.
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99998875431 12456777777777776667788888888888888776544444556677777778888888899
Q ss_pred HHHHHHHHHHHHHhCh---hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHH
Q 000049 1983 ESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGA 2059 (2629)
Q Consensus 1983 ~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~ 2059 (2629)
+.|...+..+...... ...+.+++.++..++++--.++++..+...+..
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~a---------------------------- 762 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQA---------------------------- 762 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHH----------------------------
Confidence 8888887777654332 235678888888888887777776665544311
Q ss_pred HHHHhCCChhhhHhhhHHHHHHhcCCC-CHHHHH----HHHHHHHHHHhhccccc---HHHHHHHHHhhcCCCChhHHHH
Q 000049 2060 LAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQS----LAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASIRRS 2131 (2629)
Q Consensus 2060 La~~~g~~l~~~l~~il~~Ll~~L~~~-~~~vr~----~a~~al~~l~~~~~~~~---~~~ll~~Ll~~l~d~~~~vR~~ 2131 (2629)
+...-.+.+. | ..++..+.....+. ...+.. +...|.+.+...+.+.. ...++..+.. ...+..+|..
T Consensus 763 lV~t~~~~l~-y-~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvf 838 (1233)
T KOG1824|consen 763 LVITKEPDLD-Y-ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVF 838 (1233)
T ss_pred HHhcCCCCcc-H-HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHH
Confidence 0000000110 0 00111111111000 001111 22334444444444322 3333333333 2345688889
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhh
Q 000049 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK 2211 (2629)
Q Consensus 2132 a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~ 2211 (2629)
|.-.+|.+..+.+.... +++-..++..|+.++++|+.+|..|||++....-..+ ++.+.+.+
T Consensus 839 a~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y----Lpfil~qi----------- 900 (1233)
T KOG1824|consen 839 ALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY----LPFILEQI----------- 900 (1233)
T ss_pred HHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH----HHHHHHHH-----------
Confidence 99999999876543333 3344477889999999999999999999865332222 33332222
Q ss_pred cCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHH
Q 000049 2212 KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291 (2629)
Q Consensus 2212 ~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~ 2291 (2629)
.+. +.-+.--...+-+++...+...
T Consensus 901 ---------------------------~sq-pk~QyLLLhSlkevi~~~svd~--------------------------- 925 (1233)
T KOG1824|consen 901 ---------------------------ESQ-PKRQYLLLHSLKEVIVSASVDG--------------------------- 925 (1233)
T ss_pred ---------------------------hcc-hHhHHHHHHHHHHHHHHhccch---------------------------
Confidence 111 1111222333344443333223
Q ss_pred HHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 000049 2292 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILT 2371 (2629)
Q Consensus 2292 al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~ 2371 (2629)
++|+++.+|..+.+......+..|+..+.|||.++...| +.++|.|-..+.++.+..|..++.
T Consensus 926 ---------------~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--esLlpkL~~~~~S~a~~~rs~vvs 988 (1233)
T KOG1824|consen 926 ---------------LKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--ESLLPKLKLLLRSEASNTRSSVVS 988 (1233)
T ss_pred ---------------hhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--HHHHHHHHHHhcCCCcchhhhhhh
Confidence 345555566666666666667789999999999987665 678999988888888999999999
Q ss_pred HHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC------------
Q 000049 2372 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS------------ 2439 (2629)
Q Consensus 2372 AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~------------ 2439 (2629)
|++..+..-...+ .++..+.+.-....++|+|..||+.|...+...+++-|. -+..++++++.++.
T Consensus 989 avKfsisd~p~~i-d~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps-lIrDllpeLLp~Ly~eTkvrkelIre 1066 (1233)
T KOG1824|consen 989 AVKFSISDQPQPI-DPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS-LIRDLLPELLPLLYSETKVRKELIRE 1066 (1233)
T ss_pred eeeeeecCCCCcc-CHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh-HHHHHHHHHHHHHHHhhhhhHhhhhh
Confidence 9998887766666 455555555555788999999999999999999999884 66667777665543
Q ss_pred ----------CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCC
Q 000049 2440 ----------SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509 (2629)
Q Consensus 2440 ----------~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2629)
++..+.|..++.+++.++..+-+.+. .-.+...+..++.|. -+++.-...-+.++...|...
T Consensus 1067 VeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~d----it~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~--- 1138 (1233)
T KOG1824|consen 1067 VEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLD----ITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSA--- 1138 (1233)
T ss_pred hcccCccccccchHHHHHHHHHHHHHHHHhhhhhcc----HHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHH---
Confidence 23445667777777777765544431 224555566666655 567766666666655554321
Q ss_pred CchhhHHHHHHHHhhc------------CCCCHHHHHHHHHHHHHHHh
Q 000049 2510 NTTVVVDILASVVSAL------------HDDSSEVRRRALSALKSVAK 2545 (2629)
Q Consensus 2510 ~~~~l~~~l~~l~~~l------------~~~~~~vr~~al~~l~~~a~ 2545 (2629)
....++.++.++-..+ -+...|.+|.|++++..+-+
T Consensus 1139 VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1139 VLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred HHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 0123444555544332 13445778888888888744
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=374.28 Aligned_cols=648 Identities=16% Similarity=0.219 Sum_probs=460.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhh-----------------ccCCc-hHHHHHHH
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA-----------------VHDPE-KSVAEAAE 1118 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~~~~-~~~~~~a~ 1118 (2629)
+++.++|..++|||.++|+.|+++|.+.. ..+++..+..+.+++.. ..++. ++...-..
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 35678899999999999999999999875 34556655555554432 22222 22222235
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 000049 1119 DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD------EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191 (2629)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 1191 (2629)
++|-..+.+.++++ ..++.+|.++.+..+..|+++++.++. .||+.+..+..++.+ + .+.
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----------~---~~~ 144 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----------E---QAS 144 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----------c---cch
Confidence 68998888888888 778899999999999999999999854 455554444444321 1 222
Q ss_pred chhhHHHHHHHHhhhhcCCCCh----hHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHh----hCcc-chhhhHH-HHH
Q 000049 1192 LGRQGIALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDK----HGRD-NVSLLFP-IFE 1260 (2629)
Q Consensus 1192 ~~R~~~~~~l~~l~~~~~~~~~----~~i~~~li~~~l-~d~~~~Vr~~~~~a~~~~i~~----~g~~-~~~~Ll~-~~~ 1260 (2629)
.+|++...++|++|+.+.++.. +.++..+++++. ..++..||.++.+|....++. |..+ ..+.||+ +|+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 6899999999999999988754 468888877776 567999999999997665443 4444 3467887 577
Q ss_pred HHhcccCCChhhhhhHHHHHHHHHHHHHh-hhccCCCcchh-hHHHHHhhcCCCcHHHHHHHHHhhhhhHh---------
Q 000049 1261 NYLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQ--------- 1329 (2629)
Q Consensus 1261 ~~l~~~~~~~~~~~~vr~~~v~~~~~La~-~l~~~~~~l~~-i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~--------- 1329 (2629)
.|... +.+++.+++.++..+.. |++...+++.. ++...+.+++.++++|...+.+--+....
T Consensus 225 atq~~-------d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 225 ATQSP-------DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred cccCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66643 45689899887776664 66666778865 89999999999999887655543222111
Q ss_pred --------------hhccchHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcC
Q 000049 1330 --------------SMQDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389 (2629)
Q Consensus 1330 --------------~~~~~~~~ll~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~ 1389 (2629)
..+.....++|.+++.|.++ ++|+..++|+.||..+++..|++.+. ++++|+++.+++
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~ 375 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQN 375 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCC
Confidence 11222357899999999874 37999999999999999999999986 899999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhhHHHH
Q 000049 1390 RNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSL 1463 (2629)
Q Consensus 1390 ~~~~~~R~~Al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~L 1463 (2629)
. ||+.|++|.++||++.++.. ....|++.+.+|.++..+.|+.-.||+++..+++.+++.++.... ..+++.+
T Consensus 376 p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 376 P-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred c-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHH
Confidence 8 89999999999999999876 568899999999999999999999999998888888776654322 2223333
Q ss_pred HhhhccCChhhhHHHHHHHHHHHhhCchhh---------hhhccchHHHHhhhhc--C-CCHHHHHHHHHHHHHHhhhcC
Q 000049 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---------SQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1464 l~~L~~~~w~~r~~a~~~L~~la~~~p~~l---------~~~L~~ivp~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
+++|. +.+|+-..+|+++..+++.+++.. .++++.|+..|++..+ | .....|.+|..||+.+.+...
T Consensus 455 ~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 455 LEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 33332 234444445555555444332211 1123333333333332 1 234455555555555554433
Q ss_pred chhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHH----hhc-------CC--CHHHHHHHHH
Q 000049 1532 NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR----GLR-------ER--SAETKKKAAQ 1598 (2629)
Q Consensus 1532 ~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~----~L~-------d~--~~~vr~~a~~ 1598 (2629)
+.. .+....+.+.+.. .++ |+ -.+++...|.
T Consensus 534 ~~v------------------------------------y~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 534 DDV------------------------------------YPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHH------------------------------------HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 211 1112222222211 111 11 1255666777
Q ss_pred HHHHHhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCChHH
Q 000049 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE 1674 (2629)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~ 1674 (2629)
.++.+.+.++. ++.++.+.+|..+...++. .+..|.+.|+-++++++..+|+. |++.+.|+|...|++..+..+
T Consensus 578 ~Lq~i~rk~~~--~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 578 TLQSIIRKVGS--DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHccc--cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 78888777655 7889999999999999997 56678999999999999999986 688999999999987765655
Q ss_pred HHHHHHHHHHHHHhhChhH---HHhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcC--
Q 000049 1675 RSGAAQGLSEVLAALGTVY---FEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-- 1747 (2629)
Q Consensus 1675 R~~a~~~L~~i~~~~g~~~---l~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~-- 1747 (2629)
-..+..-++.+++.++.+. .+.++..+++.++++ +..+|...+++|+.++..+|.+|.||++.+++.+.+.-+
T Consensus 656 c~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 4444455789999999884 378999999999886 678999999999999999999999999999998877642
Q ss_pred -CC--C------hhHHHHHHHHHHHHHHHhh
Q 000049 1748 -DE--N------ESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1748 -d~--~------~~VR~~al~al~~iv~~~~ 1769 (2629)
|. + +.+|++++++...++..+.
T Consensus 736 ~d~~~~~~~dYvd~LRe~~leay~gi~qglk 766 (859)
T KOG1241|consen 736 TDPADDSMVDYVDELREGILEAYTGIIQGLK 766 (859)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 1 2356666666666655443
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=373.81 Aligned_cols=318 Identities=26% Similarity=0.366 Sum_probs=246.8
Q ss_pred HHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHhhccch
Q 000049 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2629)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2629)
||||+.+++||..++. . .+|.+|+++++|+++||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred hH-HHHHHHHHHHHHHh---hchhhhhhhhhHHHHHHHHHHhhhccccc-----hhHHHHHHHHHHHhhhhhhhhhhhhH
Q 000049 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2629)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~ 496 (2629)
++ +||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++.... .+ ..+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~-~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LD-KIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-ch-hhhh--hh
Confidence 84 99999999999999 55678888999999999999999999765 45555555521111 11 2222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhcc-CChhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000049 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2629)
Q Consensus 497 ~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vr~~a~~ 572 (2629)
..+|.++.++||+| +++|+|+| .+++|.+|.+++++.++..+..+..+.. ..+|+++|||++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47898888888885 55999999 6688888889999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-hHHHHHHHHHHhHhhhhhHHhccCCCCCCcccCCCCCCCCCHHHHHHHHHHhhccccc--c-----CC
Q 000049 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA--R-----GP 644 (2629)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-----~~ 644 (2629)
.+++++.++|+ +...++.++++|+....... ..++.+....... .....+++ ....... . .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~~~~---~~s~~~~~~~~~~------~~v~~ai~-~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSETGD---KESSAENSSDKNL------SPVLSAIC-LAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhccccc---ccccccccccccc------ccchHHHH-hhhHhhhccccchhHHH
Confidence 99999999998 78889999999997653110 0000110111111 11222222 1111110 0 24
Q ss_pred ccchhhhhhccCCccccccccccchhhhHHhHHhhCCChHHHHhhcHH
Q 000049 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2629)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2629)
+.++++|++||||.|.. +++|++|| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 67899999999999975 37899995 33 99999999999963
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-30 Score=306.33 Aligned_cols=685 Identities=17% Similarity=0.210 Sum_probs=490.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh--------
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-------- 1691 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~-------- 1691 (2629)
+-..+...+.|+++-+|......+..++...|-..+++++|.|.+.|.+.. ....-+++.++..++.....
T Consensus 91 iKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 91 IKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 445566777889999999999999999998888889999999999997654 23445777778777764322
Q ss_pred hHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000049 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2629)
Q Consensus 1692 ~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~ 1771 (2629)
..++-++|.+++..+++++.+|..++.|+..+...-...+.-++.+.+..++..-.|++++||....+++..+.+...++
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 23467899999999999999999999999988887777888888999999999999999999999888877665543322
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHh
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2629)
++|.+ ..++..+..
T Consensus 250 ----l~phl--------------------------------------------------------------~~IveyML~ 263 (885)
T KOG2023|consen 250 ----LVPHL--------------------------------------------------------------DNIVEYMLQ 263 (885)
T ss_pred ----cccch--------------------------------------------------------------HHHHHHHHH
Confidence 22222 122233333
Q ss_pred hccCccHHHHHHHHHHHHHHHhc--ChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHh
Q 000049 1852 VRSDVSLSVRQAALHVWKTIVAN--TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929 (2629)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~--~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~ 1929 (2629)
...|.+.+|--.|++.|.++++. .+..+.+|++.++|.++..+.-++.+.- +.+...++
T Consensus 264 ~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~---------LL~~~eeD---------- 324 (885)
T KOG2023|consen 264 RTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII---------LLKNNEED---------- 324 (885)
T ss_pred HccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH---------HhcCcccc----------
Confidence 34677778999999999999985 3466889999999999988875443211 01100110
Q ss_pred hhcCCCChhHHHHHH----HHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhH
Q 000049 1930 RGLKDPSASRRQGVC----IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005 (2629)
Q Consensus 1930 ~~L~d~~~~vR~~a~----~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~il 2005 (2629)
....|++.++|-... .+.++... ..+...+..+ .-=...+...|...+.+++.+...+|.+..+-++
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~--~eDdddDe~D-------DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~ 395 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDAD--DEDDDDDEDD-------DDDAFSDWNLRKCSAAALDVLANVFGDELLPILL 395 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccc--cccccccccc-------cccccccccHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 001111222211100 00000000 0000000000 1112346778888888888888888877666666
Q ss_pred HHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC
Q 000049 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085 (2629)
Q Consensus 2006 p~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~ 2085 (2629)
|.|-+.|.+++- .++....-|+|++|+.+-..+.||++.++|.+++.|.|
T Consensus 396 PlLk~~L~~~~W------------------------------~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 396 PLLKEHLSSEEW------------------------------KVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred HHHHHHcCcchh------------------------------hhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc
Confidence 766666655321 01112456889999988889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcc----cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHH
Q 000049 2086 DDMDVQSLAKEAAETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161 (2629)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~----~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~l 2161 (2629)
+.+-||..++|++++....+. .+++.+++..|+..+-|.+..|+.+||.++..+-+..+.++.+|+..++..|...
T Consensus 446 KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~a 525 (885)
T KOG2023|consen 446 KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFA 525 (885)
T ss_pred CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 999999999999998877552 2568899999999999999999999999999999999999999999999999887
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC
Q 000049 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 2241 (2629)
Q Consensus 2162 l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~ 2241 (2629)
++.....-..--..|++++..+.+. .++-|.++.-++|.+++.+.--
T Consensus 526 f~kYQ~KNLlILYDAIgtlAdsvg~---------------------------------~Ln~~~YiqiLmPPLi~KW~~l 572 (885)
T KOG2023|consen 526 FGKYQKKNLLILYDAIGTLADSVGH---------------------------------ALNKPAYIQILMPPLIEKWELL 572 (885)
T ss_pred HHHHhhcceehHHHHHHHHHHHHHH---------------------------------hcCcHHHHHHhccHHHHHHHhc
Confidence 7643322222223333333322210 1123567777888888776532
Q ss_pred C--HHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC---------------CCCHhHHHHHHHHHHHHHHhcC
Q 000049 2242 S--AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------------RFPWQVKSAILSTLSIIIRKGG 2304 (2629)
Q Consensus 2242 ~--~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~---------------~~~~~vk~~al~~L~~L~~~~~ 2304 (2629)
+ ...---..+|++.++...+ ..|.||...+....++++.. ..+.+....+|+.++.+.+.+|
T Consensus 573 sd~DKdLfPLLEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg 651 (885)
T KOG2023|consen 573 SDSDKDLFPLLECLSSIASALG-VGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG 651 (885)
T ss_pred CcccchHHHHHHHHHHHHHHHh-ccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhh
Confidence 2 2222346899999999998 78999988877666666541 1223455679999999999999
Q ss_pred CCccCchH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc-----cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 000049 2305 IALKPFLP--QLQTTFIKCLQDSTRTVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2629)
Q Consensus 2305 ~~l~p~lp--~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~-----~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2629)
..+.+.+. .+...+++|+.|+-++||.++...||.+... .|..+.+++.+...+......+..++.+|++++.
T Consensus 652 ~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 652 SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHH
Confidence 98888664 4889999999999999999999999999553 3566667777766665555789999999999999
Q ss_pred hhcCCCcChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-hhc----CCCCchhhHhHH
Q 000049 2378 KHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLADLLQELL-NLA----SSPSWAARHGSV 2450 (2629)
Q Consensus 2378 ~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll-~~~----~~~~~~~~~~~~ 2450 (2629)
-+.|.++ .+++..++.-|...++.. ...+-.+.|-.+|+|+.+.|+ .+.+.++.+. .|. .-++...+.+++
T Consensus 732 ~k~g~~~-~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe-~vAp~l~~f~~pWc~sl~~i~DneEK~sAF 809 (885)
T KOG2023|consen 732 LKMGLKM-KQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPE-EVAPHLDSFMRPWCTSLRNIDDNEEKESAF 809 (885)
T ss_pred HHhchhh-hhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHH-hcchhHHHHHHHHHHHhcccccchhHHHHH
Confidence 9999988 688888888887777654 456788999999999999986 4455555432 232 223444688899
Q ss_pred HHHHHHHhhCCcccc
Q 000049 2451 LVFATFLRHNPSAIS 2465 (2629)
Q Consensus 2451 ~~l~~~l~~~p~~~~ 2465 (2629)
..++.++.-+|..+.
T Consensus 810 rG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 810 RGLCNMINVNPSGVV 824 (885)
T ss_pred HHHHHheeeCchhhh
Confidence 999999999998764
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=280.46 Aligned_cols=626 Identities=14% Similarity=0.145 Sum_probs=437.0
Q ss_pred ChHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhH-----------------hhhhccC-CchHHHH
Q 000049 1055 QPNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTS-----------------LWIAVHD-PEKSVAE 1115 (2629)
Q Consensus 1055 ~~~~~~~ll~~-~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~-----------------l~~~~~~-~~~~~~~ 1115 (2629)
+..++.+|.++ .+|||+++|..++.+|.+... .++..++.++.. +.++... .+++..+
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~---~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~ 78 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQS---GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQK 78 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhcc---ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 34577788877 699999999999999988752 223333333322 2333333 3333344
Q ss_pred HHHHHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 000049 1116 AAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD--EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2629)
Q Consensus 1116 ~a~~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 1192 (2629)
-..++|.....+.++++ .-.+.+|.++.++.-..|++.+++++. .-...|++++..+..-. +. ..|..
T Consensus 79 ~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv----g~-----eqp~~ 149 (858)
T COG5215 79 GCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV----GD-----EQPVS 149 (858)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc----cc-----cCchH
Confidence 45688998887887777 667899999999999999999999865 22245666555554321 11 13446
Q ss_pred hhhHHHHHHHHhhhhcCCCCh----hHHHHHHHhhhc-CCCcHHHHHHHHHHHHH---HH-HhhCc-cchhhhHH-HHHH
Q 000049 1193 GRQGIALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIM---II-DKHGR-DNVSLLFP-IFEN 1261 (2629)
Q Consensus 1193 ~R~~~~~~l~~l~~~~~~~~~----~~i~~~li~~~l-~d~~~~Vr~~~~~a~~~---~i-~~~g~-~~~~~Ll~-~~~~ 1261 (2629)
+++....++++.|+...++++ +.++..++.+++ ..+...||.++++|... ++ .++.. +..+.+|+ +|+.
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh
Confidence 778888999999988777554 345555556776 45789999999999665 22 22333 34568887 4666
Q ss_pred HhcccCCChhhhhhHHHHHHHHHHHHHh-hhccCCCcch-hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhh---------
Q 000049 1262 YLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--------- 1330 (2629)
Q Consensus 1262 ~l~~~~~~~~~~~~vr~~~v~~~~~La~-~l~~~~~~l~-~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~--------- 1330 (2629)
|... +.+++.+++.++..+-. |++-..++++ .+...+...+++++++|...+.+--+.+...
T Consensus 230 tq~~-------d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 230 TQGN-------DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred ccCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 5543 35577776544444332 4444456665 5667778899999999988776644333211
Q ss_pred -hc-----------cchHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCC
Q 000049 1331 -MQ-----------DEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNS 1392 (2629)
Q Consensus 1331 -~~-----------~~~~~ll~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~ 1392 (2629)
.+ ....+++|.++..|.++ ++|+..++|+.||...++..|+..+. +++.|+.+.++++ +
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~ 379 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-S 379 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-h
Confidence 11 11357899999999873 47999999999999999999998886 6999999999988 8
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCC
Q 000049 1393 AKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2629)
|+.|++|+++||++.++.. ....+++.+.+|.+...+.|+.-.|.+.+..|++.+++.+
T Consensus 380 w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-------------------- 439 (858)
T COG5215 380 WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-------------------- 439 (858)
T ss_pred hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--------------------
Confidence 9999999999999998866 4577899999999999999998889888877777765432
Q ss_pred hhhhHHHHHHHHHHHhhCchhhh--hhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc----------hhHHhHH
Q 000049 1472 WRTKQSSVQLLGAMAYCAPQQLS--QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----------PEIASLV 1539 (2629)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~--~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----------~~i~~lv 1539 (2629)
+..+. .|++..+...+..+.| +|.+..+++++...++.++.. +.+..++
T Consensus 440 ------------------a~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~ 500 (858)
T COG5215 440 ------------------AMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL 500 (858)
T ss_pred ------------------HHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence 22221 2456666777777888 888999999999998887752 2345566
Q ss_pred HHHHhccC--CCChhHH----HHHHHHHhccccccCChhhhhhHHHHHHHhhc-------------CC--CHHHHHHHHH
Q 000049 1540 PTLLMGLT--DPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-------------ER--SAETKKKAAQ 1598 (2629)
Q Consensus 1540 p~Ll~~l~--d~~~~~r----~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~-------------d~--~~~vr~~a~~ 1598 (2629)
..|++... +.+...| .++.+++. ++.+...+.+..+.......+. |+ -.++...-+.
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~--~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~ 578 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLIL--ICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIG 578 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 66665532 2222344 34444442 3333222333333333322221 11 1244555555
Q ss_pred HHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCChHH
Q 000049 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI-PEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE 1674 (2629)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~-~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~ 1674 (2629)
.+..+.+. .+.++.+.-+++|..+.+.+.... ..+-.....+|+.+...+|+. |.+.++|+|...+... +..+
T Consensus 579 vl~aiir~--~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~-d~~v 655 (858)
T COG5215 579 VLEAIIRT--RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT-DRFV 655 (858)
T ss_pred HHHHHHHh--cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch-hHHH
Confidence 55555553 345788888999999999998763 456678899999999988875 6789999999988433 3334
Q ss_pred HHHHHHHHHHHHHhhChhHH---HhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhc
Q 000049 1675 RSGAAQGLSEVLAALGTVYF---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2629)
Q Consensus 1675 R~~a~~~L~~i~~~~g~~~l---~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2629)
-..+..-++.+.+.+|.++. +.++..+.+.++++ +.++|...+++|+.++..+|..|.+|++.++-.+.+.-
T Consensus 656 ~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 656 LNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 44455557899999998843 67888888988875 67899999999999999999999999999888776653
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-27 Score=284.69 Aligned_cols=693 Identities=19% Similarity=0.226 Sum_probs=478.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh-----h
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-----Q 1495 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~-----~ 1495 (2629)
+-..++.+++|+++.+|......+..+++.-.-..+..++|.|.+.|++.+..+..+|..+|..+++..++.+. .
T Consensus 91 iKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 91 IKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 34467889999999999887777777766555556789999999999999999999999999999998776553 3
Q ss_pred hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhh
Q 000049 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2629)
.+.-++|++++..++++|.+|..|..|+.++.-.-.++-+. .+.
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~------------------------------------~iD 214 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYV------------------------------------HID 214 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHH------------------------------------HHH
Confidence 57779999999999999999999999999886432221110 011
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000049 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF 1655 (2629)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~ 1655 (2629)
..+..+...-.|.+++||+..|..+.-+... .++.+.|+++.++..+.+..+|.+.+|--.|.+.+-++++.-
T Consensus 215 ~Fle~lFalanD~~~eVRk~vC~alv~Llev--r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp----- 287 (885)
T KOG2023|consen 215 KFLEILFALANDEDPEVRKNVCRALVFLLEV--RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP----- 287 (885)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHh--cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-----
Confidence 2223333444677889999999999988875 455789999999999999988888888777777766665410
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH
Q 000049 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2629)
Q Consensus 1656 ~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l 1735 (2629)
. +..-+.||+
T Consensus 288 ----------------i------------------------------------------------------~~~~L~p~l 297 (885)
T KOG2023|consen 288 ----------------I------------------------------------------------------CKEVLQPYL 297 (885)
T ss_pred ----------------C------------------------------------------------------cHHHHHHHH
Confidence 0 001124788
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHh-hcCCCcccc
Q 000049 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK-VAGTSGKAL 1814 (2629)
Q Consensus 1736 ~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~-~~~~~~k~~ 1814 (2629)
++++|.+++++...+.++- +.++-.++ .. ..|....+|- ..-.. ..|. +...
T Consensus 298 ~kliPvLl~~M~Ysd~D~~---------LL~~~eeD---~~-------vpDreeDIkP-------Rfhksk~~~~-~~~~ 350 (885)
T KOG2023|consen 298 DKLIPVLLSGMVYSDDDII---------LLKNNEED---ES-------VPDREEDIKP-------RFHKSKEHGN-GEDA 350 (885)
T ss_pred HHHHHHHHccCccccccHH---------HhcCcccc---cc-------CCchhhhccc-------hhhhchhccC-cccc
Confidence 8888888888775544421 00000000 00 0011111110 00000 0000 0000
Q ss_pred ccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHh
Q 000049 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2629)
Q Consensus 1815 ~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L 1894 (2629)
.+++++||+++. ...+..|..|+++..++..++...+. +.++.++|.+-+.|
T Consensus 351 ~~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 351 DDEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHL 402 (885)
T ss_pred cccccccccccc-------------------------ccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHc
Confidence 011111111110 01245688999888888888776665 78899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHH
Q 000049 1895 ASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2629)
Q Consensus 1895 ~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2629)
.+.+|.+|..+.-++|.+++.+-.. .+|.++|.+.+.+.|+.+-||.-.|++|+........+.-..|+..++..++
T Consensus 403 ~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 9999999999999999999987544 5789999999999999999999999999887555444444567788888888
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCch
Q 000049 1972 TALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 2051 (2629)
Q Consensus 1972 ~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~ 2051 (2629)
+.+-|.+.+|+++|+.+|..+-+..|. +++|++-..| +.+...++.+-...+-
T Consensus 483 ~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp~l~~IL----------~~l~~af~kYQ~KNLl------------- 535 (885)
T KOG2023|consen 483 RRLLDSNKKVQEAACSAFATLEEEAGE----ELVPYLEYIL----------DQLVFAFGKYQKKNLL------------- 535 (885)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhccc----hhHHHHHHHH----------HHHHHHHHHHhhccee-------------
Confidence 889999999999999999999887776 4445432222 1121112111000000
Q ss_pred hHHHHHHHHHHHhCCChh--hhHhhhHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhccc-------ccHHHHHHHHH-
Q 000049 2052 FNAHALGALAEVAGPGLN--FHLGTILPALLSAM---GDDDMDVQSLAKEAAETVTLVIDE-------EGVESLVSELL- 2118 (2629)
Q Consensus 2052 ~~~~aL~~La~~~g~~l~--~~l~~il~~Ll~~L---~~~~~~vr~~a~~al~~l~~~~~~-------~~~~~ll~~Ll- 2118 (2629)
.--.|+|.+|...|.++. .|+..++|+|++.. .+++.++= -..+|+..+..+.+. +.+...+..+.
T Consensus 536 ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~ 614 (885)
T KOG2023|consen 536 ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQK 614 (885)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 124689999999998875 48999999999764 56655442 245677766665432 11222222222
Q ss_pred ------hhcCC-----CChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC
Q 000049 2119 ------KGVGD-----NQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2629)
Q Consensus 2119 ------~~l~d-----~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~ 2185 (2629)
..-.+ .+...-..++.++..+++..+....+.+ .+++..++.++.|.-++||+.+...|+.+++.+.
T Consensus 615 t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~ 694 (885)
T KOG2023|consen 615 TLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF 694 (885)
T ss_pred HHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 11111 1223334677888888887665554433 4578888999999999999999999999988764
Q ss_pred cccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhh
Q 000049 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 2265 (2629)
Q Consensus 2186 ~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l 2265 (2629)
....| .+..++|++...+....-.+-.+|+.++|+++...| ...
T Consensus 695 ~~v~p-----------------------------------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g-~~~ 738 (885)
T KOG2023|consen 695 EHVIP-----------------------------------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMG-LKM 738 (885)
T ss_pred Hhccc-----------------------------------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc-hhh
Confidence 32222 223345555444444455677889999999999999 788
Q ss_pred hhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhc
Q 000049 2266 KEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL 2343 (2629)
Q Consensus 2266 ~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~ 2343 (2629)
++|+..++..|+-+++.. .+..+.....-|+|.++...|..+.|++++.++....++.+- +.+-+..|...+..++..
T Consensus 739 ~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 739 KQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred hhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheee
Confidence 999999999999988754 234566677778999999999999999999999888888774 677899999999999877
Q ss_pred cC
Q 000049 2344 ST 2345 (2629)
Q Consensus 2344 ~~ 2345 (2629)
.|
T Consensus 819 Np 820 (885)
T KOG2023|consen 819 NP 820 (885)
T ss_pred Cc
Confidence 65
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-25 Score=294.10 Aligned_cols=596 Identities=18% Similarity=0.230 Sum_probs=439.9
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch-hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000049 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2629)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2629)
...+...+...+.+++|..|++.|.||-.++..++. ....-..++|...+...|.|.|+-+++.|.+++|-+++..+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 345666777888899999999999999999988873 3445567888999999999999999999999999999887777
Q ss_pred hhhhhHHHHHHhccCcC---------------------chhHHHHHHHHHHhhhccCcCcccchhhhcCC-------Cch
Q 000049 2000 AIDEIVPTLLHALEDDQ---------------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLP-------LSA 2051 (2629)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~---------------------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~-------~~~ 2051 (2629)
....++..|++.|..+. .+++.+..++++|+..++..-|.+++++++-. ..-
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 77888889988873221 12567899999999999999999999998632 112
Q ss_pred hHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---cccccHHHHHHHHHhhcCCCChhH
Q 000049 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASI 2128 (2629)
Q Consensus 2052 ~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~---~~~~~~~~ll~~Ll~~l~d~~~~v 2128 (2629)
.++..++.|++-+|..+.||+++++|.|+++--|++..|+.++...|+.++.. +.++++++++.+|+.++.+..|++
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 46788999999999999999999999999999999999999999999999864 235789999999999999999999
Q ss_pred HHHHHHHHHHHHHhch-hhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhh
Q 000049 2129 RRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207 (2629)
Q Consensus 2129 R~~a~~~L~~l~~~~~-~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~ 2207 (2629)
|.++|.++..+.+..+ .++.+.++++|..+++.+||-.+.||++|-.+...+.+-+-+. ...++
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~------------~d~~~--- 1120 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI------------CDVTN--- 1120 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cccCC---
Confidence 9999999999998765 4578899999999999999999999999887766665432110 00000
Q ss_pred hhhhcCCcccccCCCCcccchhhHHHHH-HHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCH
Q 000049 2208 RRKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2629)
Q Consensus 2208 ~~~~~~~~~~l~g~~l~k~l~~ilp~ll-~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~ 2286 (2629)
|-.-.+.+..++|.++ +|+++..+++|..++.++.++++..| ..++||.+.+++-|++..+.-++.
T Consensus 1121 ------------~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1121 ------------GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred ------------cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchH
Confidence 0000134566888876 77888889999999999999999998 799999999999999998875333
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHhcc--CChhHHHHHHHHhh
Q 000049 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL------GKLSALS--TRVDPLVGDLLSSL 2358 (2629)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aL------g~l~~~~--~~~~~ll~~Ll~~l 2358 (2629)
-.-..++...+.=.+. =++.|..+++.. +.++.+- ..+..++|.+.+.+
T Consensus 1188 vLnYls~r~~~~e~ea-----------------------lDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEA-----------------------LDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred HHHHHHHhhhhhHHHH-----------------------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2222333321111110 123333333222 2222211 23567788888888
Q ss_pred hcC-CHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000049 2359 QVS-DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2629)
Q Consensus 2359 ~~~-d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2629)
+.+ .-+.|.+..+.+..++...|.++ .||.+.++..++..+.|+++.+|+..|.+.|.|++...++...+++..++.+
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~em-tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEM-TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLAD 1323 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhcccc-CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 754 35667777888888888899988 7999999999999999999999999999999999999988888898888776
Q ss_pred cCCCCchhhHhHHHHHHHHHhhCCcccc---------------------------------------CChhHHHHHHHHH
Q 000049 2438 ASSPSWAARHGSVLVFATFLRHNPSAIS---------------------------------------MSPLFLSILDRLK 2478 (2629)
Q Consensus 2438 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~---------------------------------------~~~~~~~i~~~l~ 2478 (2629)
+..++...+..+.-....+..++++.+. ..-+..+++..++
T Consensus 1324 ~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~ic 1403 (1702)
T KOG0915|consen 1324 LLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLIC 1403 (1702)
T ss_pred HhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHH
Confidence 5544433222111111112222221110 0112334444455
Q ss_pred hhhc-CCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHH
Q 000049 2479 SSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2629)
Q Consensus 2479 ~~~~-~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~ 2557 (2629)
.... ++.+-+|..++.++...........|. +.+......+..++++..++.+.--+.++......+.+.+....+.
T Consensus 1404 eni~nn~~w~lr~q~Akai~~~a~~~sss~~~--p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~s 1481 (1702)
T KOG0915|consen 1404 ENITNNESWKLRKQAAKAIRVIAEGLSSSAPI--PVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSS 1481 (1702)
T ss_pred HHhccchHHHHHHHHHHHHHHHcccccccCCh--HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchH
Confidence 4444 445778888888887765443333221 4667778888889999999999999999987777666666555556
Q ss_pred HHHHHHhhhcCCc
Q 000049 2558 FGPALAECLKDGS 2570 (2629)
Q Consensus 2558 l~p~l~~~~~~~~ 2570 (2629)
+.-..+.+..+..
T Consensus 1482 i~~A~~~e~sr~~ 1494 (1702)
T KOG0915|consen 1482 IEHAVMEEVSRRE 1494 (1702)
T ss_pred HHHHHHHHHHHHH
Confidence 6566666554433
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-21 Score=270.86 Aligned_cols=1305 Identities=16% Similarity=0.155 Sum_probs=730.8
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHhCC-Cc-------HHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000049 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYP-DS-------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2629)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~-~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~ 1203 (2629)
++.|+..|.+.+...|..++.++..+..... +. -.+.+..|+...... + ..+ --.+..+..+|..
T Consensus 101 IppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g--s----k~d-~~L~~~Av~AL~n 173 (2102)
T PLN03200 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG--N----KQD-KVVEGLLTGALRN 173 (2102)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC--c----hhh-HHHHHHHHHHHHH
Confidence 4678889998899999999999998864321 11 022334444432210 0 001 1234455677777
Q ss_pred hhhhcCCCC---h-hHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc--cc-h-hhhHHHHHHHhcccCCChhhhhh
Q 000049 1204 AADVLRTKD---L-PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DN-V-SLLFPIFENYLNKKASDEEKYDL 1275 (2629)
Q Consensus 1204 l~~~~~~~~---~-~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~--~~-~-~~Ll~~~~~~l~~~~~~~~~~~~ 1275 (2629)
++..-++-. . ...++.++ ..+.++++.++..+..+.......++. +. + ...+|.|-+++... ....
T Consensus 174 Ls~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg-----~~~~ 247 (2102)
T PLN03200 174 LCGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG-----NEVS 247 (2102)
T ss_pred HhcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-----CChH
Confidence 775432211 0 01223332 444677888888887765444433221 11 1 24567777777541 1235
Q ss_pred HHHHHHHHHHHHHhhhccCCCcc--hhhHHHHHhhcCCCcHH---------HHHHHHHhhhhhHhhhccchHHHHHHHHH
Q 000049 1276 VREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRLLD 1344 (2629)
Q Consensus 1276 vr~~~v~~~~~La~~l~~~~~~l--~~i~~~L~~~L~~~~~~---------Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~ 1344 (2629)
+|+.++-.++.|+.+-......+ ...++.|++.+..++.+ .|+.+.-+++.+.... ..+++.+-+
T Consensus 248 VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L~~ 323 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYLGE 323 (2102)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHHHH
Confidence 88989888899886421111111 13467777777766543 4777777777765332 445555555
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCcc-----hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chhHH
Q 000049 1345 QLMKSDKYGERRGAAFGLAGVVKGFGIS-----SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYV 1418 (2629)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~-----~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~-~~~~v 1418 (2629)
.+....+...--.+..++..+...+... .+....+.+.|.+.+++++.....+.+..++..+. |+. +...+
T Consensus 324 ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~---gN~~l~~~L 400 (2102)
T PLN03200 324 LSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY---GNAYLSRKL 400 (2102)
T ss_pred hhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc---CChHHHHHH
Confidence 5433333333334555565554432211 12223456788888988744434555565554422 221 11111
Q ss_pred --HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchh
Q 000049 1419 --IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2629)
Q Consensus 1419 --~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~--v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~ 1492 (2629)
....+.++..+...+..++..+..++..+...-.... + ...+|.|++.|.+++...+..++..++.++...+++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2467778888888888999999999988875432221 1 457899999999988899999999999998765543
Q ss_pred hh-hhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhcccc
Q 000049 1493 LS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFV 1566 (2629)
Q Consensus 1493 l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~ 1566 (2629)
.. -.-.+.+|.|.++|..++.++|+.|+++|++++..-.+ . .+ ...+|.|++.+.+.+...+ .+..++... .
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL--i 558 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL--V 558 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH--H
Confidence 21 11257899999999999999999999999999874211 1 22 2578889999988777665 566655431 1
Q ss_pred ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc-ch--HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~--l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
...+. ..++.+...+...+..++..+.+.++++...... ++.. .. ....++.|.+++.++++.+++.|+.+|
T Consensus 559 ~~~d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 559 RTADA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred hccch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11122 2335566677777889999999999998775332 2211 10 135789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH--HhHhHHHHHhhcCCChhhHH
Q 000049 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF--EHILPDIIRNCSHQRASVRD 1714 (2629)
Q Consensus 1644 ~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l--~~llp~l~~~l~~~~~~vR~ 1714 (2629)
..++..-.+. ...+.+|.++..+.+.. ...+..++.+|+.+......+ .+ ...+|.+++.+.+.+..+++
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e 712 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAE 712 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence 9998743321 23567888888887654 447888999999998743332 11 45789999999999999999
Q ss_pred HHHHHHHHhhhhhccchHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhch-h------hhHHHHHhhccCC
Q 000049 1715 GYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFN 1786 (2629)
Q Consensus 1715 ~a~~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~-i------~~llp~l~~~l~d 1786 (2629)
.++.++..++..-... .... ...++++...+....+.+|+.|..++..++...+.+. + .-.+..+...+..
T Consensus 713 ~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 713 QAVCALANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HHHHHHHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence 9999999998754321 1112 4578999999999999999999999999887665332 1 1134445555554
Q ss_pred CchHHHH--HHHHHHHHHHHhhcCC-CccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHH
Q 000049 1787 DNWRIRQ--SSVELLGDLLFKVAGT-SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1863 (2629)
Q Consensus 1787 ~~~~vR~--sa~~ll~~ll~~~~~~-~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~a 1863 (2629)
.+-+... .+++.+..+...-.+. ..+.. +..+.+.-+ -+..+..++.+.++.+.+.
T Consensus 792 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~---------------~~~~~e~p~------~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 792 TDLDSSATSEALEALALLARTKGGANFSHPP---------------WAVLAEVPS------SLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred CCcchhhHHHHHHHHHHHHhhcccCCCCCCc---------------hhhHHhccC------chHHHHHHHHcCChHHHHH
Confidence 4444333 3666666665421110 00000 011222111 1233334557778889999
Q ss_pred HHHHHHHHHhcChhhHhhhHH---HHHHHHHHH-hcCCCHHHHHH---------------HHHHHH------HHHHHh--
Q 000049 1864 ALHVWKTIVANTPKTLKEIMP---VLMNTLISS-LASSSSERRQV---------------AGRALG------ELVRKL-- 1916 (2629)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~---~Ll~~L~~~-L~~~~~~~R~~---------------A~~~L~------~lv~~~-- 1916 (2629)
|++++..++...|.-+..++. ..+..+..+ +++++.++|.- ...++. .++..+
T Consensus 851 ai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (2102)
T PLN03200 851 AIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVD 930 (2102)
T ss_pred HHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 999999998877755444432 222222222 23344443322 221111 111100
Q ss_pred -----cc------ch---------------------------hhhHHHHHhhhcCCCChhHH-----HHHHHHHHHHHHh
Q 000049 1917 -----GE------RV---------------------------LPSIIPILSRGLKDPSASRR-----QGVCIGLSEVMAS 1953 (2629)
Q Consensus 1917 -----~~------~~---------------------------l~~llp~L~~~L~d~~~~vR-----~~a~~aL~~li~~ 1953 (2629)
.. .+ -+.+-=+|...+.+.++.-| .++..+|.+-+..
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~ 1010 (2102)
T PLN03200 931 MLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLAS 1010 (2102)
T ss_pred HHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHh
Confidence 00 00 00011111111111111111 1122222221111
Q ss_pred hchh---hHHHhHHHHHHH-HHHH-hcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc--hhHHHHHHH
Q 000049 1954 AGKS---QLLSFMDELIPT-IRTA-LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLK 2026 (2629)
Q Consensus 1954 ~~~~---~l~~~l~~ll~~-l~~~-L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~ 2026 (2629)
+... .+++--..-+.. +... ++|++-.--.++..+ +|.|-..|++++. +..+.+.+.
T Consensus 1011 ~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~q~~a 1074 (2102)
T PLN03200 1011 YTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRA----------------IPSLANLLKSEETIDRYFAAQALA 1074 (2102)
T ss_pred hccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHH----------------hHHHHhhhhhHHHHHHHHHHHHHH
Confidence 1100 001111111122 2222 233322111222222 2223333333221 122333333
Q ss_pred HHHhhhccC---------cCcccchhhhcCCC---------------chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHh
Q 000049 2027 QILSVRTTA---------VLPHILPKLVHLPL---------------SAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082 (2629)
Q Consensus 2027 ~il~~~~~~---------ilp~Lip~L~~~~~---------------~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~ 2082 (2629)
.++...++. ....+++.+..... +.....++..+.++=.-.....-.+.+|.|++.
T Consensus 1075 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~l 1154 (2102)
T PLN03200 1075 SLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDL 1154 (2102)
T ss_pred HHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 333221111 11111111111000 001123444443321111222345779999999
Q ss_pred cCCCC--HHHHHHHHHHHHHHHhhcc-------cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhh--hH
Q 000049 2083 MGDDD--MDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD--EA 2151 (2629)
Q Consensus 2083 L~~~~--~~vr~~a~~al~~l~~~~~-------~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~--~~ 2151 (2629)
|+... +.+|..+...+..+....+ +.+.-+.+-.++....+. .....+..++..++.. .+... -.
T Consensus 1155 L~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~--s~e~a~~ElL~IL~~~--~e~~~~l~a 1230 (2102)
T PLN03200 1155 LKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQD--STEEAASELLRILFSS--PELRRHESA 1230 (2102)
T ss_pred hccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCcc--chhHHHHHHHHHHhCC--HHHHHHhhh
Confidence 97654 4678888877777764322 122222222222222211 1234455555555421 12211 12
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhH
Q 000049 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLL 2231 (2629)
Q Consensus 2152 ~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~il 2231 (2629)
...+..|+..+...+...|.+|..+|..++.... .+..+ .-...+
T Consensus 1231 ~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~----------~~~~~-------------------------~a~~ai 1275 (2102)
T PLN03200 1231 FGAVNQLVAVLRLGSRSARYSAARALQELFSAEH----------IRDSE-------------------------LARQAV 1275 (2102)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh----------hhhhh-------------------------hhhccc
Confidence 4567788888888888889888888888765311 00000 001234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchh-----hhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCC
Q 000049 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI-----PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA 2306 (2629)
Q Consensus 2232 p~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-----~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~ 2306 (2629)
|.+...+.++....+..++.+|-.+++.-.. +.-.. ..+..++++|.+..+.+.+..+++.+..+.......
T Consensus 1276 ~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is---~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R 1352 (2102)
T PLN03200 1276 QPLVEMLNTGSESEQHAAIGALIKLSSGNPS---KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIR 1352 (2102)
T ss_pred hHHHHHhcccchhhhHHHHHHHHHHHcCCCC---hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHH
Confidence 5566667777778888888888888864321 11112 455667888888767778887777765432211111
Q ss_pred ccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---------cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 000049 2307 LKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL---------STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2629)
Q Consensus 2307 l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~---------~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2629)
.++---..+..++..+.|+...++..|..+|-.|... ++-..+++. .+-.......+.++.+|..+.
T Consensus 1353 ~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl~ 1428 (2102)
T PLN03200 1353 STPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKLG 1428 (2102)
T ss_pred hhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHHh
Confidence 1111122455666677776666789999999988543 222333333 332235566778888887776
Q ss_pred hhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC----hh---HHHHHHHHHHhhcCCCCchhhHhHH
Q 000049 2378 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DG---QLADLLQELLNLASSPSWAARHGSV 2450 (2629)
Q Consensus 2378 ~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~----~~---~~~~~l~~ll~~~~~~~~~~~~~~~ 2450 (2629)
...+....+....-+++.+..+++...+.++..+++.+.-+.-+-. ++ ...+++-.++. -....| +.|++.
T Consensus 1429 ~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~al 1506 (2102)
T PLN03200 1429 KDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTR-PDLGTW-GQHSAL 1506 (2102)
T ss_pred CCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhc-cCccee-cHHHHH
Confidence 3222222233344555666666666778888998888766543211 11 12344433332 222233 345566
Q ss_pred HHHHHHHhhCCccccCCh-hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCC
Q 000049 2451 LVFATFLRHNPSAISMSP-LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS 2529 (2629)
Q Consensus 2451 ~~l~~~l~~~p~~~~~~~-~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 2529 (2629)
.+|..++.+ |+...... -...+++.|...+.|.++.+++.|+++++.++....-+. +..-...++++++.+.+..
T Consensus 1507 ~~l~~i~e~-~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~~ 1582 (2102)
T PLN03200 1507 QALVNILEK-PQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIGI 1582 (2102)
T ss_pred HHHHHHHhC-cchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCCC
Confidence 666655543 43322111 124678889999999999999999999998876653221 1223568999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhhh
Q 000049 2530 SEVRRRALSALKSVAKANPSAIMVH 2554 (2629)
Q Consensus 2530 ~~vr~~al~~l~~~a~~~~~~v~~~ 2554 (2629)
...|+.|+.+|......-|..|..|
T Consensus 1583 ~~~~~~A~~aL~~~~~~w~~~v~~~ 1607 (2102)
T PLN03200 1583 LSLQQRAVKALESISLSWPKAVADA 1607 (2102)
T ss_pred hhHHHHHHHHHHHhhcccHHHHHHc
Confidence 9999999999988777666666543
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-25 Score=271.41 Aligned_cols=747 Identities=16% Similarity=0.257 Sum_probs=487.5
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCCh--hHHHHHHHHHhccccccCChhhhhhHHHHHHHhhc
Q 000049 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2629)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2629)
-.+++.+|..|-.-|.++.. ..+..++..|-..+-+++. ..|.+-.. .|...|.
T Consensus 11 lSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL--------------------~LKN~L~ 66 (859)
T KOG1241|consen 11 LSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGL--------------------QLKNSLT 66 (859)
T ss_pred cCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhH--------------------HHhhhhc
Confidence 34677888888888887764 3344444444444444432 23321111 1223344
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHH
Q 000049 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDA 1665 (2629)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~-~g~~~~~~ll~~Ll~~ 1665 (2629)
.++++.+....+-+-.+-. +. -..+-..++..|..+.|..+..|+.+++.++.. ++...++++++.|...
T Consensus 67 akd~~~k~~~~qRWl~l~~------e~---reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n 137 (859)
T KOG1241|consen 67 AKDPERKQQYQQRWLQLPA------EI---REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN 137 (859)
T ss_pred cCCHHHHHHHHHHHHcCCH------HH---HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence 4455554444333322211 11 234556677888889999999999999999874 4455799999999988
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhChhHH----HhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHH--h
Q 000049 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ--Q 1737 (2629)
Q Consensus 1666 L~~~~~~~~R~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~--~ 1737 (2629)
..++++...+.+++.++|.++..+.++.+ ..++-.+++.... ++..||-++..+|-.--...+..|..-.+ .
T Consensus 138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 88777667888999999999999988855 4566677776654 57889999988887666555555543322 3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchh----hhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccc
Q 000049 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2629)
Q Consensus 1738 ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i----~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~ 1813 (2629)
++......-..++..|+.+|+.++..|+..|-...- +.+++.....+++++..+...+++.-..+..
T Consensus 218 iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice--------- 288 (859)
T KOG1241|consen 218 IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE--------- 288 (859)
T ss_pred eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---------
Confidence 666667777778889999999999988876533211 1133333333444444443333332222110
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh-h---hHhhhHHHHHHH
Q 000049 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-K---TLKEIMPVLMNT 1889 (2629)
Q Consensus 1814 ~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~---~l~~~l~~Ll~~ 1889 (2629)
+. .+. +.+.=...-.+.| . --+.-++.++|.
T Consensus 289 -----------------EE-iD~---------------------------~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~ 323 (859)
T KOG1241|consen 289 -----------------EE-IDL---------------------------AIEYGEAVDQGLPPSSKYFARQALQDVVPV 323 (859)
T ss_pred -----------------HH-HHH---------------------------HHHHHHHhhcCCCchhhHHHHHHHhHhhHH
Confidence 00 000 0000000000111 0 011223345555
Q ss_pred HHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh
Q 000049 1890 LISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2629)
Q Consensus 1890 L~~~L~-------~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2629)
|++.|. +.+|..-.+|..||.-+.+.+|+.+.|.++|++.+.++.+++.-|.++..++|.++..-.+..+.+.
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 555554 2457788999999999999999999999999999999999999999999999999987777888999
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh-----hhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcC
Q 000049 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID-----EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~-----~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~il 2037 (2629)
..+.+|.+...++|+.--||+.++++|+.+++........ ..++.+++.|.++.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP--------------------- 462 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP--------------------- 462 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc---------------------
Confidence 9999999999999999999999999999998876532221 12222222222211
Q ss_pred cccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Q 000049 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117 (2629)
Q Consensus 2038 p~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~L 2117 (2629)
.+......++-.|++.+..+.... ... ....+.+..++..|
T Consensus 463 ----------rva~N~CWAf~~Laea~~eA~~s~-------------~qt----------------~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 463 ----------RVASNVCWAFISLAEAAYEAAVSN-------------GQT----------------DPATPFYEAIIGSL 503 (859)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHhccCC-------------CCC----------------CccchhHHHHHHHH
Confidence 122223445555554221100000 000 00012234444555
Q ss_pred HhhcC--C-CChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHH
Q 000049 2118 LKGVG--D-NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2629)
Q Consensus 2118 l~~l~--d-~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~ 2194 (2629)
++.-. | .+...|.++..+|+.+.++++.+..+....+......-++. + .+ +.+.....+..+..+-.
T Consensus 504 l~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q----~----i~--~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 504 LKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ----T----IS--SQILSLADRAQLNELQS 573 (859)
T ss_pred HhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH----H----HH--HHhccHhhHHHHHHHHH
Confidence 44432 1 34567888888888888887776665544443333332210 0 00 01111111111111112
Q ss_pred HHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhh
Q 000049 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2629)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~-~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~ 2273 (2629)
.+...+.....+ ++ ...+.....+|..|++.+.+ .+.-+.+.|..+++.++...| ..|..|++.+.
T Consensus 574 ~Lc~~Lq~i~rk-----------~~-~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~ 640 (859)
T KOG1241|consen 574 LLCNTLQSIIRK-----------VG-SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG-KGFAKYMPAFK 640 (859)
T ss_pred HHHHHHHHHHHH-----------cc-ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence 222222221100 00 12234455678888887777 456678899999999999999 88999999999
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH-HhccCChhHH
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPL 2350 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l-~~~~~~~~~l 2350 (2629)
+.|.+.+....+..|..++...++.+++.++..+.||...+++.++++|+++ +++|+-....++|.+ ..+..++++|
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Y 720 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPY 720 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999766678899999999999999999999999999999999999998 899999999999999 5577888888
Q ss_pred HHHHHHhhhcC-----C----------HHHHHHHHHHHHHHHhhcCCC----cChHHHHHHHHHHHHhhcCC--CHHHHH
Q 000049 2351 VGDLLSSLQVS-----D----------AGIREAILTALKGVLKHAGKS----VSSAVKIRVYSVLKDLVYHD--DDHVRV 2409 (2629)
Q Consensus 2351 l~~Ll~~l~~~-----d----------~~vr~~~l~AL~~vi~~~g~~----~~~~~~~~i~~~L~~~l~~~--~~~vr~ 2409 (2629)
+..++..++.. | .++|+++++|...++...+.+ ...++++.|+.++...-.++ ++.+..
T Consensus 721 l~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~ 800 (859)
T KOG1241|consen 721 LEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHA 800 (859)
T ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 88877766421 1 688999999999999988732 23699999999998887765 478889
Q ss_pred HHHHHHHHHHhcCChh
Q 000049 2410 SAASILGIMSQCMEDG 2425 (2629)
Q Consensus 2410 ~aa~~Lg~L~~~~~~~ 2425 (2629)
.++..||.|+..+|..
T Consensus 801 ~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 801 AALGLIGDLATMFGKG 816 (859)
T ss_pred HHHHHHHHHHHHcccc
Confidence 9999999999998864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-21 Score=272.60 Aligned_cols=1374 Identities=14% Similarity=0.117 Sum_probs=772.3
Q ss_pred HhHHHhhcCC--CHHHHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHh
Q 000049 1133 SGLFKALSHS--NYNVRLAAAEALATALDEYPDSIQ------GSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSA 1204 (2629)
Q Consensus 1133 ~~Ll~~l~~~--~~~vR~~aa~~la~~~~~~~~~~~------~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l 1204 (2629)
..+++.|.+. +...|+.+...|..+.+..++.-. +.+..|.... .. .+...|.-++.++..+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL----~s------g~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLL----RS------GTLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHH----cC------CCHHHHHHHHHHHHHH
Confidence 5566666654 667777777777776654433111 1222233221 11 2235676666777777
Q ss_pred hhhc-------CCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC-ccc------hhhhHHHHHHHhcccCCCh
Q 000049 1205 ADVL-------RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDN------VSLLFPIFENYLNKKASDE 1270 (2629)
Q Consensus 1205 ~~~~-------~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g-~~~------~~~Ll~~~~~~l~~~~~~~ 1270 (2629)
+..- ...-++.++. .+.+.+...|..+..+...+..... +++ ....+|.+-..+....+
T Consensus 86 S~~e~nk~~Iv~~GaIppLV~-----LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk-- 158 (2102)
T PLN03200 86 CKEEDLRVKVLLGGCIPPLLS-----LLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK-- 158 (2102)
T ss_pred hcCHHHHHHHHHcCChHHHHH-----HHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch--
Confidence 5431 1122233333 3455578899988888776554321 111 13445555555654222
Q ss_pred hhhhhHHHHHHHHHHHHHhhhccCCCc-c-hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHHH
Q 000049 1271 EKYDLVREGVVIFTGALAKHLAKDDPK-V-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLL 1343 (2629)
Q Consensus 1271 ~~~~~vr~~~v~~~~~La~~l~~~~~~-l-~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~ll 1343 (2629)
.+..+++.++..+..|+.+-+..... + ...++.+++.++++++.+|..++.++..++....+.. ...++.++
T Consensus 159 -~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV 237 (2102)
T PLN03200 159 -QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLL 237 (2102)
T ss_pred -hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH
Confidence 22335666667777777654322111 1 2478899999999999999988887766654322211 23577788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhC--cchhhhhcHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHHHHhccC
Q 000049 1344 DQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRN--------SAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1344 ~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~l~~~~--------~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
+.|..+++...|..|+.+|..++.+-. ...+...+.++.|.+.+.... +...++-|+.+++.++.+...
T Consensus 238 ~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~- 316 (2102)
T PLN03200 238 KLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSA- 316 (2102)
T ss_pred HHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchh-
Confidence 877655556889999999999997421 112223355666666664321 223466788888888864322
Q ss_pred chhHHH---------------------------------------HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHhhcH
Q 000049 1414 FEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMSQLSA 1453 (2629)
Q Consensus 1414 ~~~~v~---------------------------------------~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~~l~~ 1453 (2629)
+-+++. .+.+.+.+.+.++++. +.+.+..++..++.+..-
T Consensus 317 ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l 396 (2102)
T PLN03200 317 LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYL 396 (2102)
T ss_pred hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Confidence 111111 1123333444333322 234444444332221100
Q ss_pred -HhH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1454 -QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1454 -~~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
..+ ....+.++..+...+...+..++..|..++.+..+....- -...+|.|.++|.+.++.+|+.|+++|+.++..
T Consensus 397 ~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 397 SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 000 2334455666666667888889999998886644432211 134689999999999999999999999999863
Q ss_pred cCc-h-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccc-cCChhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000049 1530 IKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN-TVDAPS-LALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2629)
Q Consensus 1530 ~~~-~-~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~-~~~~~~-l~~i~p~L~~~L~d~~~~vr~~a~~~l~~ 1602 (2629)
-.+ . .+ ...+|.|.+.+..++..++ +|..++....... ....-. -...+|.|.+.+++.+++.+..++.++.+
T Consensus 477 ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~n 556 (2102)
T PLN03200 477 VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 221 1 11 4678999999998888877 6777776422111 111111 13568888899999999999999999999
Q ss_pred HhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-------chhhHHHHHHHhccCCChHHH
Q 000049 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNSNVER 1675 (2629)
Q Consensus 1603 l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-------~~~ll~~Ll~~L~~~~~~~~R 1675 (2629)
+... ++. ..++.+..++..+++.++..+.++++.+......+. ...-+|.|.+.+.++. ...+
T Consensus 557 Li~~-~d~--------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ik 626 (2102)
T PLN03200 557 LVRT-ADA--------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQ 626 (2102)
T ss_pred HHhc-cch--------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHH
Confidence 9764 332 133556677888889999999999999877443321 2357888888887664 5577
Q ss_pred HHHHHHHHHHHHhhChh----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch-HhhHH-hHHHHHHhhcCCC
Q 000049 1676 SGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDGLADE 1749 (2629)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f-~p~l~-~ii~~ll~~L~d~ 1749 (2629)
..++..++.++..-... .....+|.++..+.+.+..+|..+..++..+.......- ..++. .++|++.+.+.+.
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 88888898888643221 125678999999999999999999999999996332221 12233 3899999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhc--hh-hhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccH
Q 000049 1750 NESVRDAALGAGHVLVEHYATT--SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2629)
Q Consensus 1750 ~~~VR~~al~al~~iv~~~~~~--~i-~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~ 1826 (2629)
+.++++.++.++..++..-... .. ...+|.+.+.+.+.+.+.|..+...+..+....+ .+
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~----- 769 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VD----- 769 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hh-----
Confidence 9999999999999887643211 11 2357888888888899999999999888874421 00
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHH--HHHHHHHHHHhc--------ChhhHhhhHHHHHHHHHHHhcC
Q 000049 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ--AALHVWKTIVAN--------TPKTLKEIMPVLMNTLISSLAS 1896 (2629)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~--aA~~~l~~l~~~--------~~~~l~~~l~~Ll~~L~~~L~~ 1896 (2629)
..+.+... ..-.+.+|...++..+.+.-. .|++++..++.. .|....--.|.-+..++.++.+
T Consensus 770 ----~~~~~~~~---~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~ 842 (2102)
T PLN03200 770 ----DVLKDSVQ---CRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE 842 (2102)
T ss_pred ----HHHHHHHH---HhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc
Confidence 00111110 001233333344444444444 378888877762 1222222234456778888899
Q ss_pred CCHHHHHHHHHHHHHHHHHhc----cch--hhhHHHHH-hhhcCCCChhHHHHHHHHHHHHHHhhchhhH-----HHhHH
Q 000049 1897 SSSERRQVAGRALGELVRKLG----ERV--LPSIIPIL-SRGLKDPSASRRQGVCIGLSEVMASAGKSQL-----LSFMD 1964 (2629)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~----~~~--l~~llp~L-~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l-----~~~l~ 1964 (2629)
.++.+...|+..|..+++.-+ +-+ .+..+..+ .+.+++.+.++|.|.+..|-.-.+.+....+ ..|..
T Consensus 843 ~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (2102)
T PLN03200 843 GHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLK 922 (2102)
T ss_pred CChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHH
Confidence 999999999999999986432 211 12222223 3456678888998766555433333322111 23566
Q ss_pred HHHHHHHHHhcCCcH------HHHHHHHHHHH-HHHHHh------Ch-hhhh-hhHHHHHHhccCcCc-------hhHHH
Q 000049 1965 ELIPTIRTALCDSIL------EVRESAGLAFS-TLFKSA------GM-QAID-EIVPTLLHALEDDQT-------SDTAL 2022 (2629)
Q Consensus 1965 ~ll~~l~~~L~d~d~------~VR~~A~~al~-~l~~~~------g~-~~~~-~ilp~Ll~~L~~~~~-------~~~aL 2022 (2629)
.++..+..++...+. +++.... ... ..+... ++ .... .+--+|+..+-+.+. ..+++
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~ 1001 (2102)
T PLN03200 923 LLIQALVDMLKQNSKKESLSIEIQTPRG-FLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGI 1001 (2102)
T ss_pred HHHHHHHHHHhccCcccccceeecCCcc-chhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccH
Confidence 677777766643221 1110000 000 001100 00 0011 112244444433221 13556
Q ss_pred HHHHHHHhhhccCcCcccchhhhcCC-CchhHHH-HHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000049 2023 DGLKQILSVRTTAVLPHILPKLVHLP-LSAFNAH-ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAET 2100 (2629)
Q Consensus 2023 ~~L~~il~~~~~~ilp~Lip~L~~~~-~~~~~~~-aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~ 2100 (2629)
+++.+-+..+... |+-.... ...|... .++.|.....-...|-.-.++|.|...+++++...|-.+..++..
T Consensus 1002 ~~~~~~~~~~~~~------~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~ 1075 (2102)
T PLN03200 1002 EVLTEKLASYTSN------RQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALAS 1075 (2102)
T ss_pred HHHHHHHHhhccC------ccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 6666544322111 1100001 0111111 222222211111234445667777777877777777777777776
Q ss_pred HHhhccc------------cc-------HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHH
Q 000049 2101 VTLVIDE------------EG-------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161 (2629)
Q Consensus 2101 l~~~~~~------------~~-------~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~l 2161 (2629)
++..-+. .+ ...=++.|..... +..-+|.--..+|..+|+.-....+....+.++.|+.+
T Consensus 1076 ~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~l 1154 (2102)
T PLN03200 1076 LVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSE-EFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDL 1154 (2102)
T ss_pred HHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHH-HhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 6542111 01 1111222222211 11122222223455555544444555567788888888
Q ss_pred hcCCC--hhHHHHHHHHHHHHHhhcCcc--cc--cchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCc-c-----cchh
Q 000049 2162 LSDSD--STTVAAAWEALSRVVASVPKE--VQ--PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP-K-----ALQP 2229 (2629)
Q Consensus 2162 l~d~d--~~V~~~a~~aL~~l~~~~~~~--~l--~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~-k-----~l~~ 2229 (2629)
++... +.+|..|...|..+.+..... .+ ...++.+...+.............. .+.-+... + .-..
T Consensus 1155 L~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~E--lL~IL~~~~e~~~~l~a~~ 1232 (2102)
T PLN03200 1155 LKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASE--LLRILFSSPELRRHESAFG 1232 (2102)
T ss_pred hccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHH--HHHHHhCCHHHHHHhhhhh
Confidence 88554 367888888888887554321 00 0111222121111100000000000 00000000 0 0112
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch--hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
.++.+..-|..|+.+.|..|+.+|..+...- ..+... .+.++||+..+... ....+..++.+|-.+++.-..
T Consensus 1233 ~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~---~~~~~~~a~~ai~pLv~ll~~~-~~~~~~~a~~ALvkL~kd~is-- 1306 (2102)
T PLN03200 1233 AVNQLVAVLRLGSRSARYSAARALQELFSAE---HIRDSELARQAVQPLVEMLNTG-SESEQHAAIGALIKLSSGNPS-- 1306 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh---hhhhhhhhhccchHHHHHhccc-chhhhHHHHHHHHHHHcCCCC--
Confidence 4566777888899999999999999988652 222221 35677888877654 556677788888777653111
Q ss_pred cCchH-----HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHh-----ccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 000049 2308 KPFLP-----QLQTTFIKCLQDS-TRTVRSSAALALGKLSA-----LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376 (2629)
Q Consensus 2308 ~p~lp-----~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~-----~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~v 2376 (2629)
+.-.- .....+++.|.+. +.+++..++.....+.. ..+---..++.|++.+.+....+++.++.+|..+
T Consensus 1307 ~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~L 1386 (2102)
T PLN03200 1307 KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL 1386 (2102)
T ss_pred hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 11111 3455666777776 55666655555443211 0111124577777777764455589999888888
Q ss_pred HhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHH-----HHHHHHhhcCCCCchhhHhHHH
Q 000049 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD-----LLQELLNLASSPSWAARHGSVL 2451 (2629)
Q Consensus 2377 i~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~-----~l~~ll~~~~~~~~~~~~~~~~ 2451 (2629)
+.....--...-.+.++.++. .+-..++.....+..+|-+++...|. .... .+..++-.+.......+. ...
T Consensus 1387 c~~eegre~~~~h~a~vplV~-~ilrvS~~a~E~AV~aL~kl~~~~~~-v~~Emv~~G~~~kllllLQ~c~~~lke-kAa 1463 (2102)
T PLN03200 1387 LDDEQLAELVAAHGAVVPLVG-LVVGTNYVLHEAAISALIKLGKDRPP-CKLDMVKAGIIERVLDILPEAPDSLCS-AIA 1463 (2102)
T ss_pred hcCHhhHHHHHHcCChhhHHH-HHHcCCHHHHHHHHHHHHHHhCCChH-HHHHHHHhCHHHHHHHHHHcCCHHHHH-HHH
Confidence 754211100011122233333 33344666677788888888744443 2222 222222111112222232 333
Q ss_pred HHHHHHhhCCccccCChhHHHHHHHHHhhhcCCC-hhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCH
Q 000049 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530 (2629)
Q Consensus 2452 ~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~ 2530 (2629)
-+..++..++.....+.+..-+.+.+...+.++- ....-.|..++-.++++..... ...-...+.+.+++..|.+++.
T Consensus 1464 eLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~-~~~~~~~~~i~~Li~lL~s~~~ 1542 (2102)
T PLN03200 1464 ELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLA-SLTLTPSQAIEPLIPLLESPSQ 1542 (2102)
T ss_pred HHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhh-hhhcCccchHHHHHHHHcCCcH
Confidence 4456666666543344444445555555555442 3345568888887777643321 1113356789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCchhhhh--hHHHHHHHHHhhhcCCcchhhhhHHHHH
Q 000049 2531 EVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERCA 2581 (2629)
Q Consensus 2531 ~vr~~al~~l~~~a~~~~~~v~~--~l~~l~p~l~~~~~~~~~~vk~aae~a~ 2581 (2629)
.+++.|...+..+..+.. ++. .-...+++|.+-+...+...|..|-+|+
T Consensus 1543 ~vqe~aa~ll~~l~~~~~--~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL 1593 (2102)
T PLN03200 1543 AVQQLAAELLSHLLAEEH--FQQDITTQNAVVPLVRLAGIGILSLQQRAVKAL 1593 (2102)
T ss_pred HHHHHHHHHHHHHhcchH--HhhhhhcccchHHHHHHhcCCChhHHHHHHHHH
Confidence 999999999998886432 222 2255788888888877777787776666
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-20 Score=225.18 Aligned_cols=675 Identities=18% Similarity=0.244 Sum_probs=463.2
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcc-chhhhHHHHHH-HhcccCCChhhhhhHHHHHHHHHHHHHhhhc
Q 000049 1215 VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLA 1292 (2629)
Q Consensus 1215 ~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~-~~~~Ll~~~~~-~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~ 1292 (2629)
.++..|+ -..+..+..|..+++.+..-..++|.. .++.++|++.. .| +|.-|+..+..+..+--.++
T Consensus 364 ~i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tL---------eDqerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 364 KIMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTL---------EDQERHLLVKVIDRILYKLD 432 (1172)
T ss_pred HHHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccc---------cchhhhhHHHHHHHHHHhhc
Confidence 3555442 235667778888888777766677765 45777776432 22 23345555555555544443
Q ss_pred c-CCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000049 1293 K-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2629)
Q Consensus 1293 ~-~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2629)
. ..|++..|+-.+-..+-|++...+..--+.++.|.+..+ ....+..+-..+. ..+.-+|...+.+.+.+++.+|.
T Consensus 433 dlvrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDid-n~deYVRnttarafavvasalgi 509 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDID-NKDEYVRNTTARAFAVVASALGI 509 (1172)
T ss_pred ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCcc-cccHHHHHHHHHHHHHHHHHhCc
Confidence 3 257777766555556667777666666566666655443 2222222222222 22456899999999999999987
Q ss_pred chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000049 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1372 ~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2629)
.. ++++|+..+.++++|..|+.++.+...++.-.|...-||+..++..+-.++.|.+..||-.+..++..+++..
T Consensus 510 p~-----llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 510 PA-----LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred HH-----HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 54 5689999999998999999999999999999998889999999999999999999999999999999999998
Q ss_pred cHHhH---HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchh---hhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHH
Q 000049 1452 SAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ---LSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2629)
Q Consensus 1452 ~~~~v---~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~---l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2629)
.++++ ..++..|.++.....- ++-..+|.++.+.+|.. ...++ .+++-.+..-.+.++.+.++...+.+.
T Consensus 585 ~Pygie~fDsVlkpLwkgir~hrg---k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 585 TPYGIEQFDSVLKPLWKGIRQHRG---KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred CCcchHHHHHHHHHHHHHHHHccC---hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 88864 6777777777643211 12234556666655532 22222 345555666677788888888888888
Q ss_pred HHhhhcC-ch-hH-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000049 1525 QVGSVIK-NP-EI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2629)
Q Consensus 1525 ~l~~~~~-~~-~i-~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~ 1601 (2629)
+++..-+ +| ++ .+++|.++...-. .|.|++ .++ -+...+.-.
T Consensus 662 qcc~t~Gv~~~y~r~dilp~ff~~fw~----rrmA~d----------------------------rr~---ykqlv~ttv 706 (1172)
T KOG0213|consen 662 QCCATDGVEPAYIRFDILPEFFFSFWG----RRMALD----------------------------RRN---YKQLVDTTV 706 (1172)
T ss_pred HHhcccCCCHHHHhhhhhHHHHhhhhh----hhhhcc----------------------------ccc---hhhHHHHHH
Confidence 8876554 23 22 4556655543211 111111 000 111222333
Q ss_pred HHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCChHHHH
Q 000049 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERS 1676 (2629)
Q Consensus 1602 ~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~R~ 1676 (2629)
.+|..+|. +.++..+..-+.|..+..|..++.++..+...+|..-+ ..++..++-.++.++.. -.
T Consensus 707 ~ia~KvG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~--d~ 776 (1172)
T KOG0213|consen 707 EIAAKVGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE--DS 776 (1172)
T ss_pred HHHHHhCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc--hh
Confidence 44554554 23555555666778888999999999999888875422 34555555555544322 12
Q ss_pred HHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCCChh
Q 000049 1677 GAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENES 1752 (2629)
Q Consensus 1677 ~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~ 1752 (2629)
-...+++.++..+|.. ++..+...++..++++.+.+|+.+...++.++..+... =+..+..+=..++.+|..++++
T Consensus 777 vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypE 856 (1172)
T KOG0213|consen 777 VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPE 856 (1172)
T ss_pred hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHH
Confidence 3456788888888863 56778888888899999999999999999998766432 1233445556778899999999
Q ss_pred HHHHHHHHHHHHHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHH
Q 000049 1753 VRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2629)
Q Consensus 1753 VR~~al~al~~iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~ 1828 (2629)
|--..+.|+..|++..+-. .+..++|.+...+.+...++...++.++|.+...-+ +
T Consensus 857 vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp--------------E------ 916 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP--------------E------ 916 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc--------------c------
Confidence 9888999999998877432 466789999888999999999999999998863311 1
Q ss_pred HHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908 (2629)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~ 1908 (2629)
..+...+-++.-.|...+...+..+|++|.+.++.++...+. ..++..|+..|+..+...|....-+
T Consensus 917 -------~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtva 983 (1172)
T KOG0213|consen 917 -------YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVA 983 (1172)
T ss_pred -------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhh
Confidence 111112223443444445566788999999999999986553 1345556666666666667766666
Q ss_pred HHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 000049 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988 (2629)
Q Consensus 1909 L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~a 1988 (2629)
++-+.+.+|+- .++|.|..-.+.|+.+|++|++.+++-+.+..+ +.-.+|+-.+.|.+..++.|.|+.-|..|..+
T Consensus 984 IaIVaE~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 984 IAIVAETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred hhhhhhhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 76666666653 466777777788999999999999998887765 45578999999999999999999999988877
Q ss_pred HHHHH
Q 000049 1989 FSTLF 1993 (2629)
Q Consensus 1989 l~~l~ 1993 (2629)
+..+.
T Consensus 1060 I~Hl~ 1064 (1172)
T KOG0213|consen 1060 IKHLA 1064 (1172)
T ss_pred HHHHh
Confidence 76654
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-18 Score=229.62 Aligned_cols=649 Identities=17% Similarity=0.238 Sum_probs=429.9
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
...+...+...+.+.++..|++.+-++-.+...++..+...-..+.|...+...|.|.+.-++..|.+.+|-+.+--+.+
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 34456667777888999999999999988887777666777778889999999999999999999999999877754445
Q ss_pred CchhhHHHHHHHhccCCCh---------------------HHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC-CChh
Q 000049 1654 NFPDLVSWLLDALKSDNSN---------------------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRAS 1711 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~---------------------~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~ 1711 (2629)
.-.+++..|++++...... +........+..++..+|. +.++=.+|+.+++ ..|.
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q---PdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ---PDLVYKFMQLANHNATWN 972 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC---hHHHHHHHHHhhhhchhh
Confidence 5677888888777542210 0011122223334444443 2344455666665 5899
Q ss_pred hHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---hhhchhhhHHHHHhhccCCCc
Q 000049 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDN 1788 (2629)
Q Consensus 1712 vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~---~~~~~i~~llp~l~~~l~d~~ 1788 (2629)
-|.|+...|+.++...|...+||+.+++|.++.+=-|++..|+.+....+..++.. .-+++...++.++..++.+..
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999998766666665532 223355668888889999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHH
Q 000049 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868 (2629)
Q Consensus 1789 ~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l 1868 (2629)
||+|.+++-++.+++...+ . ..+. +...+++..+|..++|....||++|-.+.
T Consensus 1053 wRVReasclAL~dLl~g~~-------------~---------~~~~-----e~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRP-------------F---------DQVK-----EKLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCC-------------h---------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985311 0 0111 23446888888899999999999987666
Q ss_pred HHHHh--------cChhhHhhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCC
Q 000049 1869 KTIVA--------NTPKTLKEIMPVLMNTLIS-SLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS 1936 (2629)
Q Consensus 1869 ~~l~~--------~~~~~l~~~l~~Ll~~L~~-~L~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~ 1936 (2629)
..+.+ ..+..-.+.+..++|.++. .+-+.-.++|..+..++-++++..|.. ..|.++|.+......-.
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc
Confidence 55543 1223334566666666552 222556677777777777777777654 35566666666555433
Q ss_pred hhHHHH-HHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCc
Q 000049 1937 ASRRQG-VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2629)
Q Consensus 1937 ~~vR~~-a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2629)
+.+-.- +|.+ .+ .-.+.+...+....-..| -.++++.+..+......++++|.+.+.++.+
T Consensus 1186 ~~vLnYls~r~-~~------------~e~ealDt~R~s~akssp-----mmeTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1186 PQVLNYLSLRL-IN------------IETEALDTLRASAAKSSP-----MMETINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred hHHHHHHHHhh-hh------------hHHHHHHHHHHhhhcCCc-----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 333211 1111 00 001111222211111111 1235666666666677778888877776654
Q ss_pred CchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHH
Q 000049 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK 2095 (2629)
Q Consensus 2016 ~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~ 2095 (2629)
-. + +.....+..+..|+.-.|.++.||.+.++.+++..++|.++.+|..-.
T Consensus 1248 Vg-------------------l----------~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1248 VG-------------------L----------GTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred CC-------------------C----------CcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHH
Confidence 21 0 112235666777777789999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhH---HHH
Q 000049 2096 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT---VAA 2172 (2629)
Q Consensus 2096 ~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V---~~~ 2172 (2629)
.+++.++....++....++..++..+-.+.+..+..+|..+..|..+....+..|...++|..+-...+.+.+. ++.
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~d 1378 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWND 1378 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999988777777888888887777555555557777777778888888899999999998877665432111 111
Q ss_pred HHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCC--CcccchhhHHHHHHHHh-cCCHHHHHHH
Q 000049 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC--LPKALQPLLPIFLQGLI-SGSAELREQA 2249 (2629)
Q Consensus 2173 a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~--l~k~l~~ilp~ll~~L~-~~~~~~r~~a 2249 (2629)
.|.. + +||-. .+-+...++-.+++... +..+.+|.++
T Consensus 1379 vW~e---~-------------------------------------vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~ 1418 (1702)
T KOG0915|consen 1379 VWAE---L-------------------------------------VSGGAGTVRLYLLEILNLICENITNNESWKLRKQA 1418 (1702)
T ss_pred HHHH---h-------------------------------------CCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 1110 0 11110 01122334444444444 4468999999
Q ss_pred HHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHH
Q 000049 2250 ALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329 (2629)
Q Consensus 2250 a~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~v 2329 (2629)
+.++..++..+....-.|++..+...+...+..| .|+-|.-.+.++...+.++...+..-.|.+.....+...-.+...
T Consensus 1419 Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR-iwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr~~~~y 1497 (1702)
T KOG0915|consen 1419 AKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR-IWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVSRREAKY 1497 (1702)
T ss_pred HHHHHHHcccccccCChHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHHHHhHH
Confidence 9999999887764444477777777777777777 788888888888877776655444444433333333333223344
Q ss_pred HHHHHHHHHHH
Q 000049 2330 RSSAALALGKL 2340 (2629)
Q Consensus 2330 R~~Aa~aLg~l 2340 (2629)
+..+..+.|..
T Consensus 1498 ~~~ala~~~~~ 1508 (1702)
T KOG0915|consen 1498 KIMALAGAGLA 1508 (1702)
T ss_pred HHHHHhhhHHH
Confidence 44444444443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-20 Score=221.99 Aligned_cols=716 Identities=16% Similarity=0.232 Sum_probs=488.5
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhh-hccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1428 AFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
..++..+..|..+...+..=...+.+. -+++++|.+++. |++ +.|+--+..+..+.+.......++..+|+=.+-
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeD---qerhllVkvidriLyklDdlvrpYVhkILvVie 447 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLED---QERHLLVKVIDRILYKLDDLVRPYVHKILVVIE 447 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccc---hhhhhHHHHHHHHHHhhcccchhceeeeEEEee
Confidence 347777888888766665555555443 458888888764 444 346777788888888777777777777776667
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH----HHHHHHhccccccCChhhhhhHHHHH
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2629)
.++-|++...|....+.+.++++..+ +..++..+-.-+.+.++++|. +....+ ++--.+.+.|.|
T Consensus 448 pllided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafavva--------salgip~llpfL 516 (1172)
T KOG0213|consen 448 PLLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAVVA--------SALGIPALLPFL 516 (1172)
T ss_pred cceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHHHH--------HHhCcHHHHHHH
Confidence 78889999999888888888887655 233333333334455667773 222221 122345678888
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000049 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2629)
Q Consensus 1582 ~~~L~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~---~~~~~ 1657 (2629)
.....++ +|.-|..+..++..+|..+|. .+.||+..++..+...+.|....||..++.+++.+++..++ +.|+.
T Consensus 517 kavc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDs 594 (1172)
T KOG0213|consen 517 KAVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDS 594 (1172)
T ss_pred HHHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHH
Confidence 8877776 999999999999999998876 67899999999999999999999999999999999998765 46888
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhH---H-HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHh
Q 000049 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2629)
Q Consensus 1658 ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~---l-~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p 1733 (2629)
++..|.+.+..+.+. .-.....+++.++.-+..++ + .++|-.+.+-.++++.+.+...+..+...|..-|-+ ..
T Consensus 595 VlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~ 672 (1172)
T KOG0213|consen 595 VLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PA 672 (1172)
T ss_pred HHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HH
Confidence 888888888766543 22233344555554444442 2 566777788889999999999999999999887753 12
Q ss_pred hH-HhHHHHHHhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1734 YL-QQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1734 ~l-~~ii~~ll~~L~d~~~~VR~~al---------~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
|+ .+++|.++..... |..|. +.-..+++..+ .+.++..+...+.|++...|...++++..++
T Consensus 673 y~r~dilp~ff~~fw~-----rrmA~drr~ykqlv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~ 744 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFWG-----RRMALDRRNYKQLVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIV 744 (1172)
T ss_pred HHhhhhhHHHHhhhhh-----hhhhccccchhhHHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHH
Confidence 43 3578887765432 22222 11122222222 2234455556677888888888888777776
Q ss_pred HhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH
Q 000049 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883 (2629)
Q Consensus 1804 ~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2629)
..++.. |-+ ..+.+ +++..++..+.+....+. .-+..++.++...+...++|+
T Consensus 745 ~~lg~~-----------did-------erleE--------~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpyl 797 (1172)
T KOG0213|consen 745 GRLGAA-----------DID-------ERLEE--------RLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYL 797 (1172)
T ss_pred hccccc-----------ccc-------HHHHH--------HHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccch
Confidence 443211 001 11111 122222222221111111 345677778887888889999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---ccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhH
Q 000049 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKL---GER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2629)
Q Consensus 1884 ~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~---~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l 1959 (2629)
|.+...++.+|+++.+.+|+.|+..++.++..+ ++. .+.++=-+|-+.+....|++--.++.++..+...+|-..+
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999887654 332 5666666777888889999988888888888877776666
Q ss_pred HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-hhhhhHH---HHHHhccCcCchhHHHHHHHHHHhhhccC
Q 000049 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVP---TLLHALEDDQTSDTALDGLKQILSVRTTA 2035 (2629)
Q Consensus 1960 ~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-~~~~ilp---~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ 2035 (2629)
.+-..+++|.+...|.+.++.|.++....++.++.....- ...+.+- .|++.|.+..
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahk------------------- 938 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHK------------------- 938 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHH-------------------
Confidence 6677889999999999999999999999999988753321 1122222 1222222110
Q ss_pred cCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHH
Q 000049 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115 (2629)
Q Consensus 2036 ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~ 2115 (2629)
..++-.+...||.|++..|+ ..++..|++.|+.++...|....-+++.+...++ .-.++|
T Consensus 939 -----------K~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~---pFtVLP 998 (1172)
T KOG0213|consen 939 -----------KEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG---PFTVLP 998 (1172)
T ss_pred -----------HHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC---chhhhH
Confidence 01122355788999998886 4788888988877666666544444444433332 446788
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHH
Q 000049 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2629)
Q Consensus 2116 ~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~ 2195 (2629)
.|+.-...++..+++..+.++..+|+..+..-.+|+-.+.+.|-..+-|.|..-|+.|..++..+.-..+
T Consensus 999 almneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~---------- 1068 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP---------- 1068 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC----------
Confidence 8888888899999999999999999998888888888889988888989998888888877776643322
Q ss_pred HHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch
Q 000049 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2629)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2629)
|+.....+..++..+--.+...++.+.....+|+-.+....|+..+-.|+
T Consensus 1069 ------------------------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1069 ------------------------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred ------------------------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 22211222223333333344556666666677777777777766555553
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=237.81 Aligned_cols=515 Identities=22% Similarity=0.306 Sum_probs=378.7
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCC
Q 000049 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2629)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~ 1588 (2629)
.|+++.||.....+.......-++..+..+.|.+-+.++...
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-------------------------------------- 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-------------------------------------- 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--------------------------------------
Confidence 788889998888777766655444455555555554443221
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhcc
Q 000049 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2629)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~ 1668 (2629)
+..+|....-..+.++... ...+. -...++..+...++.|.+.+|.+...|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d~--~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVDP--RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccCc--chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 1234444444444444432 22232 2345788888889999999999999999998876655545556666666666
Q ss_pred CCChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHHHhhcCCC-hhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhh
Q 000049 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1669 ~~~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~-~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2629)
......|.+++.+++.+..+.|...+ ..++..+.+...+.+ ...|++++.++......+|..|+||+..++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 34466899999999999999888766 456777777777764 445668999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCccc
Q 000049 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2629)
Q Consensus 1746 L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~ 1825 (2629)
..|..+.||.++..+...++..++..+++.++|.+...+.+..||.+.++++++|.+.++.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999999999999999999998999999999999998875532
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHH
Q 000049 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVA 1905 (2629)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A 1905 (2629)
..+. ....++++.+...++|+..+||+++..++..+...... +-+..++|.++.++.+++..+.. +
T Consensus 287 -----~qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e-~ 352 (569)
T KOG1242|consen 287 -----KQLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPE-C 352 (569)
T ss_pred -----HHHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHH-H
Confidence 1111 13345677777778999999999999999888763322 22555666777778887743322 2
Q ss_pred HHHHH--HHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-chhhHHHhHHHHHHHHHHHhcCCcHHHH
Q 000049 1906 GRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2629)
Q Consensus 1906 ~~~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~-~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2629)
...|+ .++..+.+..+.-++|++.+++.+++...+..++..++.+.... .+..+.+|++.++|.+...+.|+.|+||
T Consensus 353 ~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 353 LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence 22222 34444555678899999999999999999999999999888777 5678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcC---chhHHHHHHHHHHhhhccCcCcccchhhhcC--------CCch
Q 000049 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILPKLVHL--------PLSA 2051 (2629)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~--------~~~~ 2051 (2629)
..++++++.+.+..|.+.++...|.+.+.+.++. .+..+.+++.+++...+.......+|.+... .+..
T Consensus 433 ~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~d 512 (569)
T KOG1242|consen 433 AVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRD 512 (569)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhcc
Confidence 9999999999999999988999999999986643 3456777788777543333222233322211 1111
Q ss_pred hHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000049 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2629)
Q Consensus 2052 ~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~a 2097 (2629)
.....+..+-...|..+.+|+..+++.+.+.+.+.++..+..+.++
T Consensus 513 g~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 513 GVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred CeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 1222333444456777888888888888888887777666555443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-17 Score=193.49 Aligned_cols=665 Identities=13% Similarity=0.172 Sum_probs=414.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH---
Q 000049 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--- 1694 (2629)
Q Consensus 1619 ~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~-~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l--- 1694 (2629)
++-...+..|..+.|..-..|+..++.++.. ++...+++++..+.....++++...+..+...++.++....++.+
T Consensus 94 qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~ 173 (858)
T COG5215 94 QVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM 173 (858)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence 3455567788899999999999999999984 444578899988888877777777778888889999888777543
Q ss_pred -HhHhHHHHHhhc--CCChhhHHHHHHHHHHhhhhhccchHh--hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000049 1695 -EHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1695 -~~llp~l~~~l~--~~~~~vR~~a~~~l~~L~~~~g~~f~p--~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~ 1769 (2629)
..++-.+..... .++..+|-+++.++..-.....+.|.. -...++......-+.+++++..+++.++..++..|-
T Consensus 174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 357789999998887744433333321 123356666666677888999999999888876542
Q ss_pred hc---hhhh-HHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHH
Q 000049 1770 TT---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845 (2629)
Q Consensus 1770 ~~---~i~~-llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~v 1845 (2629)
.- ..+. +.....+++.+.+.++...+++.-..+... + -+ . ..-...+. ++
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE--------------e--id-~----~~e~~~~p-----e~ 307 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE--------------E--ID-G----EMEDKYLP-----EV 307 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--------------H--hh-h----HHHHhhcc-----cC
Confidence 21 1111 222233444555555555544443333210 0 00 0 00000000 00
Q ss_pred HHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccchhh
Q 000049 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERVLP 1922 (2629)
Q Consensus 1846 l~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~~~l~ 1922 (2629)
+ .+.. .+ ........+|.++..+.+.=. +.+|.....|..||.-+.+..|+.++.
T Consensus 308 -p-----~qn~-------------~f---a~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~ 365 (858)
T COG5215 308 -P-----AQNH-------------GF---ARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR 365 (858)
T ss_pred -c-----hhhc-------------ch---HHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH
Confidence 0 0000 00 001234455666655554322 346788999999999999999999888
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
.++..+++.++.+++.-|.++..++|.++..-....+.+++++.+|.+...+.|+.--|++.+++||+.+.+++....-.
T Consensus 366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p 445 (858)
T COG5215 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISP 445 (858)
T ss_pred HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999998876667788899999999999999998899999999999998765431100
Q ss_pred -hhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCC-chhHHHHHHHHHHHhCCC---hhhhHhhhHH
Q 000049 2003 -EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAHALGALAEVAGPG---LNFHLGTILP 2077 (2629)
Q Consensus 2003 -~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~-~~~~~~aL~~La~~~g~~---l~~~l~~il~ 2077 (2629)
..++... ...+.+ +++.|. ......++-.+...+... ...++..
T Consensus 446 ~~Hl~~~v---------sa~liG-------------------l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~--- 494 (858)
T COG5215 446 CGHLVLEV---------SASLIG-------------------LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAK--- 494 (858)
T ss_pred cccccHHH---------HHHHhh-------------------hhccchHHhhhHHHHHhHHHhhhhhhccccchhHH---
Confidence 0011000 001111 111121 111122222222211111 0111111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhc--CCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 000049 2078 ALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV--GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMI 2155 (2629)
Q Consensus 2078 ~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l--~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il 2155 (2629)
....++..|+... .+.+...|.+...+||.+....+...++.+..+.
T Consensus 495 -------------------------------fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~ 543 (858)
T COG5215 495 -------------------------------FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543 (858)
T ss_pred -------------------------------HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 1112222222221 2334456666666777666555443333322222
Q ss_pred HHHHHHh-----------cCCC----hhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccC
Q 000049 2156 STLIVLL-----------SDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2629)
Q Consensus 2156 ~~Ll~ll-----------~d~d----~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2629)
.....-+ .-.| +++..+-...|..++++.+.+.
T Consensus 544 ~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i-------------------------------- 591 (858)
T COG5215 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI-------------------------------- 591 (858)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------------------------------
Confidence 2211111 1111 2233333333333333222211
Q ss_pred CCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH
Q 000049 2221 FCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2629)
Q Consensus 2221 ~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2629)
...-..+|..|++.+.+. ..-.......+|+.+....+ +.|..|++.+++.|.+.++. .+..+...+...++.+
T Consensus 592 ---e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdl 666 (858)
T COG5215 592 ---EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDL 666 (858)
T ss_pred ---ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHH
Confidence 011123666677766665 33455567888888888887 78999999999999999965 3778999999999999
Q ss_pred HHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhcC---C-----------
Q 000049 2300 IRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQVS---D----------- 2362 (2629)
Q Consensus 2300 ~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l-~~~~~~~~~ll~~Ll~~l~~~---d----------- 2362 (2629)
.+.++.++.+|...++..++++++++ +++++-....++|.+ ..+...+.+|+..++..++.. +
T Consensus 667 antl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy 746 (858)
T COG5215 667 ANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDY 746 (858)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHH
Confidence 99999999999999999999999997 899999999999999 456778888888877665421 1
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCc--ChHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhcCChhHHHHH
Q 000049 2363 -AGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCMEDGQLADL 2430 (2629)
Q Consensus 2363 -~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~Lg~L~~~~~~~~~~~~ 2430 (2629)
..++..+..|+-.|........ ..||+-+|+..+-....|++ +...+++..+||.|+..+|..++..+
T Consensus 747 ~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~ 819 (858)
T COG5215 747 RKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFG 819 (858)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhc
Confidence 3445555666666665544222 25899999999877777763 45557888999999999998655443
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-18 Score=203.26 Aligned_cols=666 Identities=16% Similarity=0.167 Sum_probs=431.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCcc-chhhhHHHHHH-HhcccCCChhhhhhHHHHHHHHHHHHHhhhccC-CCcchhhH
Q 000049 1226 ADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 1302 (2629)
Q Consensus 1226 ~d~~~~Vr~~~~~a~~~~i~~~g~~-~~~~Ll~~~~~-~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~-~~~l~~i~ 1302 (2629)
.+.+...|...++....-..++|.. .++.++|++.. .+. |.-|+.++.++..+--.++.. .|++..|+
T Consensus 178 KNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le---------Dqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 178 KNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE---------DQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred ccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---------hhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 4556677777777766655567765 45788886443 332 334555666666655445432 56776665
Q ss_pred HHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHH
Q 000049 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2629)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~ 1382 (2629)
-..-..+-+++..++..--+.+..|+...+-. ..+..+-..+ ++.+.-+|...+.+.+.+++.+|.+ .+.++
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llpf 320 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLPF 320 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHHH
Confidence 55555666777777665555555555544311 1111111111 2334568999999999999988865 46789
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH---Hhh
Q 000049 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 1459 (2629)
Q Consensus 1383 L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v---~~i 1459 (2629)
|+..+.++++|..|+.++.+...+++-+|...-+|+..++..+-.++.|.+..||-.+..++..+++...++++ ..+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 99999988899999999999999999999888899999999999999999999999999999999999888864 667
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhh----CchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC-chh
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC----APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NPE 1534 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~----~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-~~~ 1534 (2629)
+..|.++.....-. .-..+|.++.+. .|+....+-.+.+..++..++.++.+.+...........++-. .|+
T Consensus 401 l~pLw~g~~~hrgk---~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~ 477 (975)
T COG5181 401 LCPLWEGASQHRGK---ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPW 477 (975)
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHH
Confidence 77777665422111 112334444433 2333322233455555566666655554443333322222111 121
Q ss_pred --HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000049 1535 --IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2629)
Q Consensus 1535 --i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2629)
.+++.|.++...- .-|.|. ..++...-..+..+ +++..++
T Consensus 478 ~lr~~v~pefF~~fw----~rr~A~----------------------------dr~~~k~v~~ttvi---lAk~~g~--- 519 (975)
T COG5181 478 KLRDQVSPEFFSPFW----RRRSAG----------------------------DRRSYKQVVLTTVI---LAKMGGD--- 519 (975)
T ss_pred HHHHhhcHHhhchHH----Hhhhcc----------------------------cccccceeehhHHH---HHHHcCC---
Confidence 1333333332210 000000 00011111111122 2232233
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000049 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2629)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~ 1687 (2629)
+.+...+...+.|+....|..++.+...+...+|..-+ ..++..++..++.++.. + .-..-+++.+..
T Consensus 520 -----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-~-~~il~~f~tv~v 592 (975)
T COG5181 520 -----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-V-GLILPCFSTVLV 592 (975)
T ss_pred -----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-c-cEEEecccceee
Confidence 23667777778888888899999998888887775432 33444555555443211 1 011223344433
Q ss_pred h---hChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000049 1688 A---LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2629)
Q Consensus 1688 ~---~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2629)
. .|+.++..++..++..+.++.+.+|+.+....+.++..+..- =...+..+-..++..+..++++|--..+.|+..
T Consensus 593 sl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 593 SLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICS 672 (975)
T ss_pred ehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 3 345577888899999999999999999999988888765420 023455566678888998889888888888888
Q ss_pred HHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhch
Q 000049 1764 LVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839 (2629)
Q Consensus 1764 iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~ 1839 (2629)
|.....-. .+..++|.+...+.++..++....+.++|.+....+ ++.|.
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p---------------------------eyi~~ 725 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP---------------------------EYIGV 725 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc---------------------------ccCCH
Confidence 77655433 456688888888888999999988888888753211 12222
Q ss_pred hhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000049 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2629)
Q Consensus 1840 e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~ 1919 (2629)
..+-++.-.|...+...+.++|+.|.+.++.+....+. ..++..++..|+..+...|....-+++-..+.+|+-
T Consensus 726 rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 726 REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch
Confidence 22334444444445667789999999999999876553 234556666777777777887777787777777753
Q ss_pred hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000049 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2629)
.++|.+..-...|+..+++|++.+++-+.+..+ +.-.+|+-.+.|.+..++.|.|+.-|..|...+..+.
T Consensus 800 ---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig-~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 800 ---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG-QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred ---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 456777777788999999999999998887765 4456799999999999999999999988876665543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-16 Score=192.06 Aligned_cols=712 Identities=16% Similarity=0.147 Sum_probs=455.7
Q ss_pred HHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCC
Q 000049 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2629)
...|+.+..-|..=+-.+|+..+- ..+++.+.+.- -+.+.|+-.+..+..+..++++.-.||+..|+-.+-..+-|
T Consensus 182 ~~mR~~~lRiLtdkav~fg~~~vf-nkvLp~lm~r~---LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllid 257 (975)
T COG5181 182 KRMRMEGLRILTDKAVNFGAAAVF-NKVLPMLMSRE---LEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLID 257 (975)
T ss_pred chhhHHHHHHHHHHhhcccHHHHH-HHHHHHHHhhh---hhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccC
Confidence 467888888888777778876653 24555543321 23457888888899999999988889999888777778888
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC
Q 000049 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~ 1511 (2629)
++..+|-...+.+..+ ++.+. |..++..+-.-+.+.
T Consensus 258 ed~~~r~~g~eii~nL--------------------------------------~~~~G------l~~~vs~mrpDi~~~ 293 (975)
T COG5181 258 EDLKRRCMGREIILNL--------------------------------------VYRCG------LGFSVSSMRPDITSK 293 (975)
T ss_pred ccHHHhcccHHHHHHH--------------------------------------HHHhc------cceeeeeccCCcccc
Confidence 8888775543333222 22111 111222222334667
Q ss_pred CHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCC-CH
Q 000049 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SA 1590 (2629)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~ 1590 (2629)
++.||+....+.+.+++.++-+ .+.|.+.....++ +|
T Consensus 294 deYVRnvt~ra~~vva~algv~------------------------------------------~llpfl~a~c~SrkSw 331 (975)
T COG5181 294 DEYVRNVTGRAVGVVADALGVE------------------------------------------ELLPFLEALCGSRKSW 331 (975)
T ss_pred cHHHHHHHHHHHHHHHHhhCcH------------------------------------------HHHHHHHHHhcCccch
Confidence 8999999999999998877622 2334444444444 78
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhc
Q 000049 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALK 1667 (2629)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~---~~~~~ll~~Ll~~L~ 1667 (2629)
+-|.....+...+|..+|. ...+|+..++..+.+++.|....||-.++.+++.+++..|+ +.|+.++..|.+..+
T Consensus 332 ~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~ 409 (975)
T COG5181 332 EARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGAS 409 (975)
T ss_pred hhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999988775 56789999999999999999999999999999999998775 367888887877776
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhHH----HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch-HhhHHhHHHHH
Q 000049 1668 SDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAI 1742 (2629)
Q Consensus 1668 ~~~~~~~R~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f-~p~l~~ii~~l 1742 (2629)
++.+. +-.....+.+-++.-+.+++. .+.+..+...+++++.+.+...+.. ...|...|..- .-+..++.|.+
T Consensus 410 ~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v-~~~C~~v~~~tp~~lr~~v~pef 487 (975)
T COG5181 410 QHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVV-ERICDKVGTDTPWKLRDQVSPEF 487 (975)
T ss_pred hcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHH-HHHHhccCCCCHHHHHHhhcHHh
Confidence 55433 222223334444444455543 5667777778888877776654443 34444444321 12234555655
Q ss_pred HhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccc
Q 000049 1743 LDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2629)
Q Consensus 1743 l~~L~d~~~~VR~~al---------~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~ 1813 (2629)
++..- .|..|. .+-..+.+..+. +.+...+.+...|+....|...+.+....+..++...-..
T Consensus 488 F~~fw-----~rr~A~dr~~~k~v~~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dE 559 (975)
T COG5181 488 FSPFW-----RRRSAGDRRSYKQVVLTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDE 559 (975)
T ss_pred hchHH-----HhhhcccccccceeehhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccH
Confidence 54332 111111 111111111111 2233444555566655555555555555443332110000
Q ss_pred ccc---------C-CCCCCcccHHHHHHH------HHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh---c
Q 000049 1814 LLE---------G-GSDDEGASTEAHGRA------IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA---N 1874 (2629)
Q Consensus 1814 ~~~---------~-~~ede~~~~~~~~~~------l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~---~ 1874 (2629)
..+ . .+++..++ -..+. -.+..|..+...+++.+...+....+.||+.|.+.++.++. +
T Consensus 560 rleerl~d~il~Afqeq~~t~~--~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~ 637 (975)
T COG5181 560 RLEERLYDSILNAFQEQDTTVG--LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKA 637 (975)
T ss_pred HHHHHHHHHHHHHHHhcccccc--EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh
Confidence 000 0 00000000 00000 02334455667788888888888899999999999988875 3
Q ss_pred ChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000049 1875 TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1875 ~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
++. ...+..+-..+.+.+....+++--....++..+....+-. -...++|.+...|+++...+..+....++.+
T Consensus 638 c~e--~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I 715 (975)
T COG5181 638 CGE--TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTI 715 (975)
T ss_pred cch--HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHH
Confidence 333 2345566666778888888888777777777766655432 1234444445555566667777766666765
Q ss_pred HHhhchhhH-HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCch-----hHHHHH
Q 000049 1951 MASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-----DTALDG 2024 (2629)
Q Consensus 1951 i~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-----~~aL~~ 2024 (2629)
... +++.. ...+-.|.=.+...|...+.++|.+|..+||-+.+.+|+ .+++..|++.|+..+.. ..++..
T Consensus 716 ~~~-~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP---qdvL~~LlnnLkvqeRq~RvctsvaI~i 791 (975)
T COG5181 716 CMN-SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP---QDVLDILLNNLKVQERQQRVCTSVAISI 791 (975)
T ss_pred Hhc-CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH---HHHHHHHHhcchHHHHHhhhhhhhhhhh
Confidence 443 33321 122334444556677778899999999999999999998 47888899999776532 234444
Q ss_pred HHHHHhhhccCcCcccchhhhcCCC--chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000049 2025 LKQILSVRTTAVLPHILPKLVHLPL--SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102 (2629)
Q Consensus 2025 L~~il~~~~~~ilp~Lip~L~~~~~--~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~ 2102 (2629)
..+.|+ .-.++|.++....+|.. +....+|+..+.+..|++-..|+-.|.|.|-++|.|.++.-|+.+...+..++
T Consensus 792 Vae~cg--pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 792 VAEYCG--PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred hHhhcC--chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 444443 23466766666665553 33345777778888899989999999999999999999999999999999998
Q ss_pred hhcc----cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 000049 2103 LVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178 (2629)
Q Consensus 2103 ~~~~----~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~ 2178 (2629)
..+. ++..-.+++.|..++-++.|.+.++..+++..|....+.. .++..+..-+-.+...||+.-|..++
T Consensus 870 Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 870 LNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred cCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHHHHHHHHHh
Confidence 8763 2446778888888889999999999888888887654321 23333344444688899999998887
Q ss_pred HHH
Q 000049 2179 RVV 2181 (2629)
Q Consensus 2179 ~l~ 2181 (2629)
.+-
T Consensus 944 ~my 946 (975)
T COG5181 944 IMY 946 (975)
T ss_pred hhh
Confidence 763
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-17 Score=212.23 Aligned_cols=558 Identities=21% Similarity=0.252 Sum_probs=404.3
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc
Q 000049 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2629)
Q Consensus 1350 ~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l 1429 (2629)
++.+.|.....-+..+...+|.... ...++|++.+.+ ++ +..+...+..-|+.+....| ...|...++|.+....
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~ 168 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLA 168 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhh
Confidence 3567777777778888877777665 457999999998 44 56667666665665554433 1233345667777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhH-HHHHHHHHHHhhCc-hhhhhhccchHHHHhhh
Q 000049 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ-SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEV 1507 (2629)
Q Consensus 1430 ~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~-~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~ 1507 (2629)
.+.+..||+.+.+.+..+...++.......+-.++..+...+|+..+ .++.+++..+-..+ ..+. .++-|....+
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk---~elr~~~~~l 245 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK---RELRPIVQSL 245 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH---HHHHHHHHhh
Confidence 88889999999999999999888887766666777777777887644 45666666655555 3344 3445556778
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCchhH-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhc
Q 000049 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2629)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2629)
++|..+.||.+++.-++.+++.+.+... ..++|.+... ..
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L---------------------------------------~~ 286 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL---------------------------------------LR 286 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh---------------------------------------hh
Confidence 9999999999999999999988764322 3334444444 34
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHH
Q 000049 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDA 1665 (2629)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-~~~ll~~Ll~~ 1665 (2629)
|....+|..|...+.++...+..+. +....+.+.+.+...|+++.+|.........+...+|++. .....+.....
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l 363 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNL 363 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHH
Confidence 4445666777777777766654421 4456688888899999999999999999999999998863 45556666666
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhChh-----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1666 LKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1666 L~~~~~~~~R~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
+++.. ...|...+.-..++......+ ....++|.+...+.+.+.++|.+.......+...+|. ..-+....|
T Consensus 364 ~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp 440 (759)
T KOG0211|consen 364 LKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLP 440 (759)
T ss_pred hcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccCh
Confidence 65443 335555555566665555422 2356679999999999999999888877777777763 344667889
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHh---hhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000049 1741 AILDGLADENESVRDAALGAGHVLVEHY---ATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2629)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~iv~~~---~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~ 1816 (2629)
.....++|+...||......+....... +.. ..+.++|.+.....|.+||+|.+.++.+..++.+
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q----------- 509 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ----------- 509 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh-----------
Confidence 9999999999999998876554333322 222 2345889988888888999999998888776532
Q ss_pred CCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhh-ccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc
Q 000049 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895 (2629)
Q Consensus 1817 ~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~-~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~ 1895 (2629)
+|.+++++.+..+++. +.|....+|++|...+..++..+|. ..+...+++.++....
T Consensus 510 --------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 510 --------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDL 567 (759)
T ss_pred --------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhc
Confidence 2333444444444433 5777889999999999999987772 3444556666666677
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHh
Q 000049 1896 SSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2629)
Q Consensus 1896 ~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2629)
++++-.|.+...++..++..+|.. ....++|.+..+..|+.+++|.+++..|..++......... ..+.|.+....
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~ 644 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLS 644 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhc
Confidence 778999999999999999999987 56889999999999999999999999998887665544333 45677777777
Q ss_pred cCCcHHHHHHHHHHHHHHHHHh
Q 000049 1975 CDSILEVRESAGLAFSTLFKSA 1996 (2629)
Q Consensus 1975 ~d~d~~VR~~A~~al~~l~~~~ 1996 (2629)
.|++.+||..|..+++.+....
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred cCcccchhHHHHHHHHHHHHHH
Confidence 7999999999999998876543
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-13 Score=179.23 Aligned_cols=529 Identities=18% Similarity=0.231 Sum_probs=380.6
Q ss_pred hhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhc-CCCcHHHHHHHHHhhhhhHhh
Q 000049 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL-NTPSEAVQRAVSSCLSPLMQS 1330 (2629)
Q Consensus 1252 ~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L-~~~~~~Vq~~~~~~L~~l~~~ 1330 (2629)
...++|.|.+.. . ..+++.+.+..-+|.+..+.. -+.+..++...++.+ .+....|+..+++++......
T Consensus 119 r~~lipf~~e~~-~------~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAE-D------DEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhc-c------chhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888777 2 356677776666666655531 223333333333333 334456888888888777666
Q ss_pred hccch-HHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000049 1331 MQDEA-PTLVSRLLDQLMKSDKY-GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2629)
Q Consensus 1331 ~~~~~-~~ll~~ll~~L~~~~~~-~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~ 1408 (2629)
..+.. .+.+..++..+... +| +.|..++...+..+....+..++ ..+.+...+..++. ++.+|.++..-++.++.
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~ 266 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAK 266 (759)
T ss_pred cChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHH
Confidence 55433 35566677777666 45 44555555556666656555554 35677777888876 79999999999999998
Q ss_pred HhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhhHHHHHhhhccCChhhhHHHHHHHHHHH
Q 000049 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2629)
Q Consensus 1409 ~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la 1486 (2629)
..+. ......++|.+.....|....||.+|..++..++..+... ..+.+.+.+++..++..|+++....+....+.
T Consensus 267 ~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 267 VLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELS 344 (759)
T ss_pred HHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHH
Confidence 8775 2334467888888889999999999999999998877665 45789999999999999999988777766655
Q ss_pred hhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhH--HhHHHHHHhccCCCChhHHHHHHHHH
Q 000049 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI--ASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2629)
Q Consensus 1487 ~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i--~~lvp~Ll~~l~d~~~~~r~al~~L~ 1561 (2629)
...... ..-+..++.....++|...++|.++..-...+...... +.+ +.++|.+.....|.+.++|.+.....
T Consensus 345 ~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 345 SAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred HHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 432222 22356778889999999999999999888888876652 222 56789998888999988885543221
Q ss_pred h--ccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHH
Q 000049 1562 Q--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2629)
Q Consensus 1562 ~--~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A 1639 (2629)
. ....+ .+.....+.|.+...++|..+.+|....+.+..+-.. .+..-+..+.+.++|.+..+..|..|.+|.+.
T Consensus 423 ~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ai 499 (759)
T KOG0211|consen 423 TGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAI 499 (759)
T ss_pred cccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHH
Confidence 1 00111 2345567888888899999999999888777554443 33334556778889999998889999999999
Q ss_pred HHHHHHHHhhhCCCCchhhHHHHH-HHhccCCChHHHHHHHHHHHHHHHhhChhH-HHhHhHHHHHhhcCCChhhHHHHH
Q 000049 1640 ARAIGSLIRGMGEENFPDLVSWLL-DALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1640 ~~aL~~l~~~~g~~~~~~ll~~Ll-~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~-l~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
...+..++...|..++.+.+..+. ..+.+ .-...|.+++..+..++..+|.+. ...++|.++....++++..|...+
T Consensus 500 l~~ip~la~q~~~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 500 LEYIPQLALQLGVEFFDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHH
Confidence 999999999888666554443333 33333 235688899999999999999542 367788888888888899999999
Q ss_pred HHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-HHHHHhhccCCCchHHHHHHH
Q 000049 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSV 1796 (2629)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~-llp~l~~~l~d~~~~vR~sa~ 1796 (2629)
.++..++..+|..+ +...++|.+.....|..++||..+++.+..++..+.....+. +.|.++....|.+-.+|..+.
T Consensus 579 ~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 579 FSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred HHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHH
Confidence 99999999999965 567899999999999999999999999999988776554443 666666555555444444444
Q ss_pred HHHHHH
Q 000049 1797 ELLGDL 1802 (2629)
Q Consensus 1797 ~ll~~l 1802 (2629)
...+.+
T Consensus 657 ~a~~~i 662 (759)
T KOG0211|consen 657 LAFGSI 662 (759)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.1e-13 Score=159.42 Aligned_cols=425 Identities=17% Similarity=0.228 Sum_probs=307.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhhHHHHHhh-hccCChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
+.++++|+--+-|++|..-+..++..+... .+.+++..+... ..+.+-..|+|++..+.+++-+-...-..++..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 445677777778888877777776654332 356666655543 345566667788888887776533333348899
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHH---HHHHHHhccccccCC-hh
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNTVD-AP 1572 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~---al~~L~~~~~~~~~~-~~ 1572 (2629)
++|.++.++.|++..||..||+++-++++..+. +++..++..+.+...|.+..+|. -++.+++ ..+..-+ .-
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLik-dIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIK-DIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHH-Hhcccccccc
Confidence 999999999999999999999999999998876 36689999999999999888874 4455554 2232222 56
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
+++.++|.+...+...++.+|.....++..+-.. + .-++..|++.+++++.+.|.|+.++||..+-.+++.+...+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~- 240 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR- 240 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-
Confidence 7899999999999999999999999999887664 2 246789999999999999999999999999888887665432
Q ss_pred CCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchH
Q 000049 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
++.+. . ..++.++.+...+.++++.++..++.++..+....|.++.
T Consensus 241 ---------------s~P~s-~------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 241 ---------------SSPSS-M------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred ---------------cCccc-c------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 21111 0 1233445566667788888999999999999999999999
Q ss_pred hhHHhHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHHhhhc----hh--hhHHHHHhhccCCCchHHHHHHHHHHHHHHHh
Q 000049 1733 NYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2629)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~-~VR~~al~al~~iv~~~~~~----~i--~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~ 1805 (2629)
+|+..++..+++++.+.++ .++..+...-..+...++.. .+ ..++..+...+.++....|.++++.+..+..+
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 9999999999999998877 46666654433333333222 13 35888888999999999999999999887755
Q ss_pred hcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHH
Q 000049 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2629)
Q Consensus 1806 ~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ 1885 (2629)
.+|.. +. +.+.+...+...++|.+..|-..++.++..++..... +....
T Consensus 367 ~p~ql----------------------~~------h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~ 415 (675)
T KOG0212|consen 367 APGQL----------------------LV------HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRK 415 (675)
T ss_pred Ccchh----------------------hh------hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHH
Confidence 43211 11 2334666667778999999999999999999874332 12233
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2629)
Q Consensus 1886 Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~ 1918 (2629)
++..+++++.....-.+.-+.-.+..++..+.+
T Consensus 416 fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 416 FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH
Confidence 344444555554444555566666666655543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-12 Score=156.78 Aligned_cols=464 Identities=16% Similarity=0.189 Sum_probs=334.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH
Q 000049 1889 TLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2629)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2629)
.+.+.+.+.-++.|..|+.-+..+++.+-.. ....++. ...+...+++...|.|...+++.+.-..|.+... |.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~ 82 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YL 82 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HH
Confidence 3456677888899999999999888866332 2334444 3334556777888889999998877777776665 99
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchh
Q 000049 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2629)
Q Consensus 1964 ~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~ 2043 (2629)
..+++.+..++.|+|..||..|++.+..+.+
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK------------------------------------------------- 113 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAK------------------------------------------------- 113 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999998876655433
Q ss_pred hhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHH
Q 000049 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-----EEGVESLVSELL 2118 (2629)
Q Consensus 2044 L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~-----~~~~~~ll~~Ll 2118 (2629)
++..++..|++.|...+-+...|.+..+|.. .+.++.++..+. .-++..++|.|-
T Consensus 114 -------------------v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~ 173 (675)
T KOG0212|consen 114 -------------------VAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLR 173 (675)
T ss_pred -------------------HhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHHHHHH
Confidence 3344455566777777777777777777654 345555555432 124889999999
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHH
Q 000049 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2629)
Q Consensus 2119 ~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~ 2198 (2629)
.++...++.+|+..+.++..+-...+.++..|++.++..|+.++.|+.++||..+-.+++.+......+-
T Consensus 174 eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P---------- 243 (675)
T KOG0212|consen 174 ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP---------- 243 (675)
T ss_pred HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc----------
Confidence 9999999999999999999999888899999999999999999999999999998888888765432110
Q ss_pred HHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHH
Q 000049 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2629)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~ 2278 (2629)
+ ++. .....+++...+.++.++.+..|..-|.++++-.| ..+-+|.+.|.+.++.
T Consensus 244 ------~--------------s~d----~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 244 ------S--------------SMD----YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILP 298 (675)
T ss_pred ------c--------------ccC----cccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhccc
Confidence 0 001 11234555566677888999999999999997766 7888999999888888
Q ss_pred HhcCCCCHhHHHHHHHHHHHHHHhcCCCccC---chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc-----CChhHH
Q 000049 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKP---FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-----TRVDPL 2350 (2629)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p---~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~-----~~~~~l 2350 (2629)
.+.+..+..++..+...-+.+..-++..... -+..++..+.+.+.+..++.|..+...+-.+-.-. -+.+++
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~i 378 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSI 378 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHH
Confidence 8887655456666666555555433321111 12468889999999999999999999988884332 357899
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHH
Q 000049 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL 2430 (2629)
Q Consensus 2351 l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~ 2430 (2629)
++.|+..+.+++..|-...+.-+.+++..-.. ..+++-+.++| +++....--++.-+.-.+..+|..+.++.+-..
T Consensus 379 f~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL-~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~ 454 (675)
T KOG0212|consen 379 FLTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLL-EMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRS 454 (675)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHH-HHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHH
Confidence 99999999998888988888888888865332 23444444444 344444444555566677788888887765555
Q ss_pred HHHHHhhcCCCCchhhHhHHHHHHHHHhhCCcc
Q 000049 2431 LQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463 (2629)
Q Consensus 2431 l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~ 2463 (2629)
+-.++.+..+-. ....++.+|+.++..+|+-
T Consensus 455 ~a~ILe~e~nl~--FAstMV~~Ln~iLlTStEL 485 (675)
T KOG0212|consen 455 IADILEREENLK--FASTMVQALNTILLTSTEL 485 (675)
T ss_pred HHHHHhccccch--HHHHHHHHHHhhhcccHHH
Confidence 555555422222 3445777888888777754
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-08 Score=131.84 Aligned_cols=586 Identities=17% Similarity=0.188 Sum_probs=295.7
Q ss_pred HHHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhhhC-cchh------hh----hcHHHHHHHHhcCCCCHHHHHHHH
Q 000049 1337 TLVSRLLDQLMKS-----DKYGERRGAAFGLAGVVKGFG-ISSL------KK----YGIAATLREGLADRNSAKRREGAL 1400 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~-----~~~~~R~~Aa~~L~~l~~~lg-~~~l------~~----~~i~~~L~~~l~~~~~~~~R~~Al 1400 (2629)
..++.+++.|..+ .+|..|..-..-|.-++...- .+.+ .+ ..|+.+...++... +..|.+|.
T Consensus 119 ~~Le~il~lL~~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~--~~~r~~aa 196 (1133)
T KOG1943|consen 119 SDLEPILDLLERQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS--GILRRSAA 196 (1133)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc--chhHHHHH
Confidence 3455566666521 368888888888887776421 1111 11 24555555566554 35555665
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHhhcH---------------------H---
Q 000049 1401 LAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVA--VREAAECAARAMMSQLSA---------------------Q--- 1454 (2629)
Q Consensus 1401 ~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~--VR~aa~~al~~i~~~l~~---------------------~--- 1454 (2629)
.+++.+.... ...+++...+..++.+-.+..++ +.-....++..+....+. +
T Consensus 197 lllsk~~sR~--D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~ 274 (1133)
T KOG1943|consen 197 LLLSKLFSRT--DVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQS 274 (1133)
T ss_pred HHHHHHcccc--cHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHh
Confidence 5554443211 13344555555555554444443 112223333333322111 1
Q ss_pred hHHhhHHHHHhhh-------ccCChhhhHHHHHHHHHHHhh--Cch-------------hhhhhccchHHHHhhhhcCCC
Q 000049 1455 GVKLVLPSLLKGL-------EDKAWRTKQSSVQLLGAMAYC--APQ-------------QLSQCLPKIVPKLTEVLTDTH 1512 (2629)
Q Consensus 1455 ~v~~ilp~Ll~~L-------~~~~w~~r~~a~~~L~~la~~--~p~-------------~l~~~L~~ivp~L~~~L~D~~ 1512 (2629)
...+.++.+++.+ .+.+|+..++.-.+.+++-.. +|. .....+..++..++..++|.+
T Consensus 275 llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~d 354 (1133)
T KOG1943|consen 275 LLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTD 354 (1133)
T ss_pred HHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCc
Confidence 2356677777743 246799888766555553321 111 122334567778888999999
Q ss_pred HHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCCh-hH--HHHHHHHHhccccccCChhhhhhHHHHHHHhhcC--
Q 000049 1513 PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HT--KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-- 1587 (2629)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~~--r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d-- 1587 (2629)
..||..|++.++.+...++-.-.+..+...++.+. |-+ .. -.++-++......+-+-+..+..++|.+..++.-
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~ 433 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDV 433 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhh
Confidence 99999999999999988772223555555555332 211 11 1222233221222333445677899999988732
Q ss_pred ------CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHH
Q 000049 1588 ------RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2629)
Q Consensus 1588 ------~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~-~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~ 1660 (2629)
....+|.+||-++-.+++. -++.++.|++..+.+.+. ..+-|+.-.+|.+|..++-..+...|. ++.=++
T Consensus 434 ~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n--~p~Gi~ 510 (1133)
T KOG1943|consen 434 RRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN--FPHGIS 510 (1133)
T ss_pred hhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC--CCCchh
Confidence 2457999999999999987 467889999998887765 456699999999999998877665443 221122
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1661 ~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
.+ .. .+.-+...|..+...+...+..+ ..|...++.
T Consensus 511 Li-s~-~dy~sV~~rsNcy~~l~~~ia~~------------------------------------------~~y~~~~f~ 546 (1133)
T KOG1943|consen 511 LI-ST-IDYFSVTNRSNCYLDLCVSIAEF------------------------------------------SGYREPVFN 546 (1133)
T ss_pred hh-hh-cchhhhhhhhhHHHHHhHHHHhh------------------------------------------hhHHHHHHH
Confidence 11 01 11111223333333333332222 223333333
Q ss_pred HHHhh-cCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000049 1741 AILDG-LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2629)
Q Consensus 1741 ~ll~~-L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ 1819 (2629)
.++.. +.+-+..+|+.+..++..+....+....+..+|.+.......+-..|.++.-..|+++.......+ + .
T Consensus 547 ~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~-~-~---- 620 (1133)
T KOG1943|consen 547 HLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEP-V-I---- 620 (1133)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhh-h-h----
Confidence 33322 444444455555455444433333333333444444444444444444444444443322111100 0 0
Q ss_pred CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccC--ccHHHHHHHHHHHHHHHhcChhhHhhhHHH-HHHHHHHHhcC
Q 000049 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLAS 1896 (2629)
Q Consensus 1820 ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D--~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~-Ll~~L~~~L~~ 1896 (2629)
....+ ..+. ....+++.++...-+ ....+|.+....+..+..+.++.+.+++-. ....+.+.+.+
T Consensus 621 ---~~l~e---~~i~------~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~ 688 (1133)
T KOG1943|consen 621 ---KGLDE---NRIA------GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL 688 (1133)
T ss_pred ---hhhHH---HHhh------hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc
Confidence 00000 0000 001112222211111 113567777777777766655544443333 33334445556
Q ss_pred CCHHHHHHHHHHHHHHHHHhc--cchh-hhHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhchhhHHHhH-HHHHHHHH
Q 000049 1897 SSSERRQVAGRALGELVRKLG--ERVL-PSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIR 1971 (2629)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~--~~~l-~~llp~L~~~L~d~-~~~vR~~a~~aL~~li~~~~~~~l~~~l-~~ll~~l~ 1971 (2629)
++ .+|..|..++++++...- +... ..++......+.+. +..+|++...+++.+- .+.+.-++ +.+...+.
T Consensus 689 ~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp----~~~i~~~~q~~lc~~~l 763 (1133)
T KOG1943|consen 689 PN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLP----SELIHRHLQEKLCKLVL 763 (1133)
T ss_pred hH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCc----HHhhchHHHHHHHHHHh
Confidence 66 899999999999986542 2111 12333333344444 6778888877776542 11221122 22222222
Q ss_pred HHh-cCCcHHHHHHHHHHHHHHHHHhC
Q 000049 1972 TAL-CDSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1972 ~~L-~d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
... .|..++.|.....++..+++..+
T Consensus 764 ~~~p~d~~a~aR~~~V~al~~v~~~~~ 790 (1133)
T KOG1943|consen 764 ELLPSDAWAEARQQNVKALAHVCKTVT 790 (1133)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 221 22355566666666665555433
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-07 Score=125.22 Aligned_cols=291 Identities=16% Similarity=0.164 Sum_probs=189.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhcc------CChhHHHHHHHHh
Q 000049 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS------TRVDPLVGDLLSS 2357 (2629)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~------~~~~~ll~~Ll~~ 2357 (2629)
++-.+.++-.+++.++...+. .||+..+...+++.+.+. ++-.|..-.-++|.+-++. .+.+.-+..++..
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal 966 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLAL 966 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHH
Confidence 556677788888888887765 478888888888887775 6666666677777774432 2344445566666
Q ss_pred hhcCC-HHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000049 2358 LQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD---DDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2629)
Q Consensus 2358 l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~---~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2629)
.+++. +.|+.+.++|+..++...|+.. ..++..-+..+..++... .-+++....+|++ |++....++..
T Consensus 967 ~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~------~~~~~~alitt 1039 (2067)
T KOG1822|consen 967 ATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFN------GDDDEDALITT 1039 (2067)
T ss_pred hhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccc------cchhHHHHHHh
Confidence 66655 6999999999999998877765 666666666666665543 3345555555544 22222233332
Q ss_pred HHhhcCCCC---c-hhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCC
Q 000049 2434 LLNLASSPS---W-AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509 (2629)
Q Consensus 2434 ll~~~~~~~---~-~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2629)
+.+.+.++. . ..-++..++-+.++..+++...+ ...+.++.+ +..+.++.
T Consensus 1040 lgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnq----a~ai~clqq--------------------lhlFapr~-- 1093 (2067)
T KOG1822|consen 1040 LGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQ----AAAIKCLQQ--------------------LHLFAPRH-- 1093 (2067)
T ss_pred cccccCCCCcccchhHHHHHHHHHHHHhcCCCccchH----HHHHHHHHH--------------------HHhhcchh--
Confidence 222222221 1 11223344444555544443321 122333332 23333331
Q ss_pred CchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhh-hcCCcchhhhhHHHHHHHHhccc
Q 000049 2510 NTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC-LKDGSTPVRLAAERCAVHAFQLT 2588 (2629)
Q Consensus 2510 ~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~-~~~~~~~vk~aae~a~~~l~~~~ 2588 (2629)
.+...++..++..+.+...-.|++++.++++++++....+..|...+.+.+... ..+.+.--..+.|+++..+++.+
T Consensus 1094 --~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e 1171 (2067)
T KOG1822|consen 1094 --VNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTE 1171 (2067)
T ss_pred --ccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCc
Confidence 467889999999999999999999999999999999999999888877755443 34444322567799999999988
Q ss_pred cCchhHHHHHHHh----hhhhhhhhccC
Q 000049 2589 RGSEYIQGAQKFI----TGLDARRLSKF 2612 (2629)
Q Consensus 2589 ~~~~~~~~~~~~l----~~~~~~~l~~~ 2612 (2629)
.+......+.+++ +++....|+.|
T Consensus 1172 ~d~~l~~~I~~tl~~~~~~~~~~~ls~W 1199 (2067)
T KOG1822|consen 1172 TDNKLLKNILETLSRMLNSLADELLSSW 1199 (2067)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8878777777776 45666677777
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-07 Score=125.29 Aligned_cols=756 Identities=17% Similarity=0.169 Sum_probs=419.3
Q ss_pred cchhhHHHHHhhcC--CCcHHHHHHHHHhhhhhHhhhccch------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1297 KVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2629)
Q Consensus 1297 ~l~~i~~~L~~~L~--~~~~~Vq~~~~~~L~~l~~~~~~~~------~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~ 1368 (2629)
++..++..|...+. ..+..|.+.+..||..++...+... ...+..++.... ++...+|..|..+++.+..+
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~-h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA-HKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcC
Confidence 44555555555554 5677899999999999987743221 233333433333 33467899999999999985
Q ss_pred hCc--chhh--hhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000049 1369 FGI--SSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2629)
Q Consensus 1369 lg~--~~l~--~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2629)
.+- .... ...+..+..+.++..-.+......+..|..|-..+...-.+.+..+...++..++..+..|+-.+.+++
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l 248 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCL 248 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 431 1110 001233333333332222222233333333333333334577888999999999999999999999999
Q ss_pred HHHHHhhcHH----hHHhhHHHHHhhhcc-CChhhhHHHHHHH----HHHHhhCchhhhhhccchHHHHhhhhcCCCHHH
Q 000049 1445 RAMMSQLSAQ----GVKLVLPSLLKGLED-KAWRTKQSSVQLL----GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKV 1515 (2629)
Q Consensus 1445 ~~i~~~l~~~----~v~~ilp~Ll~~L~~-~~w~~r~~a~~~L----~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~V 1515 (2629)
..++...++. ....++..+.+.--+ .+...-.+-+..+ ..++...++..-..+|.+++.++.++...++++
T Consensus 249 ~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~ 328 (1176)
T KOG1248|consen 249 HSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEEL 328 (1176)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHH
Confidence 8887755442 223444444332211 1111111112222 233333444444557888888888888888888
Q ss_pred HHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHH
Q 000049 1516 QSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2629)
Q Consensus 1516 R~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~ 1595 (2629)
-.++-+++..+.+.... +.+.++.. .+...+.-+...+-+.
T Consensus 329 ~q~a~q~l~~il~~sv~-----~~~~~c~~----------------------------------~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVT-----VIDALCSK----------------------------------QLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHHHHHhcccCc-----ccHHHHHH----------------------------------HHHHHHcchHHHHHHH
Confidence 88888888888753221 11111110 1111222222244455
Q ss_pred HHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHH
Q 000049 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2629)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R 1675 (2629)
+.+++..++..+|. ...|++-..+..+-..=.+++..-+...-.|+|+.+.++|++.+-.++|.=+ ..+.....|
T Consensus 370 ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~~s~~~~R 444 (1176)
T KOG1248|consen 370 ILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HAESLSFTR 444 (1176)
T ss_pred HHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cccccccch
Confidence 66777777776665 3456655555555554445666667788899999999999886666666322 111111122
Q ss_pred HHHHHHHHHHHHhhChhHH-HhHhHHHHHhh------c---CCChhhHHHHHHHHHHhhhhhc--cchHhhHHhHHHHHH
Q 000049 1676 SGAAQGLSEVLAALGTVYF-EHILPDIIRNC------S---HQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAIL 1743 (2629)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~~l-~~llp~l~~~l------~---~~~~~vR~~a~~~l~~L~~~~g--~~f~p~l~~ii~~ll 1743 (2629)
.=..-.|-.-+.+....+| +.++|..++.- . +.....+.-..++|+-|+..|. .+...-+..+.|.+.
T Consensus 445 sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~ 524 (1176)
T KOG1248|consen 445 SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILG 524 (1176)
T ss_pred hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHH
Confidence 1000011111111222233 44555443321 1 1122456666777887777663 455555677788888
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHh-hh-----------chhhhHHHHHhhccCCC------chHHHHHHHHHHHHHHHh
Q 000049 1744 DGLADENESVRDAALGAGHVLVEHY-AT-----------TSLPLLLPAVEDGIFND------NWRIRQSSVELLGDLLFK 1805 (2629)
Q Consensus 1744 ~~L~d~~~~VR~~al~al~~iv~~~-~~-----------~~i~~llp~l~~~l~d~------~~~vR~sa~~ll~~ll~~ 1805 (2629)
..+.... +.|.....++..+++.- +. .....++|.+.+.-... .-+.|...++.+....++
T Consensus 525 ~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~ 603 (1176)
T KOG1248|consen 525 AALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT 603 (1176)
T ss_pred HHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh
Confidence 7777654 88999888888887642 11 11122444443322111 111222222222211111
Q ss_pred hcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHH----HHHHHHHHHHHHHhcChhhHhh
Q 000049 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS----VRQAALHVWKTIVANTPKTLKE 1881 (2629)
Q Consensus 1806 ~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~----VR~aA~~~l~~l~~~~~~~l~~ 1881 (2629)
.++ .+....+.+.+|. ...|.+.. .+..-++.+..++...+. .
T Consensus 604 ~t~------------------~dv~~~l~~s~~e------------~as~~~~s~~~~~~~slLdl~~~~a~~~~e---~ 650 (1176)
T KOG1248|consen 604 VTP------------------TDVVGSLKDSAGE------------LASDLDESVASFKTLSLLDLLIALAPVQTE---S 650 (1176)
T ss_pred ccc------------------HHHHHHHHHHHHh------------HhccchhhhhhHHHHHHHHHHHhhhccccc---h
Confidence 000 0000111111111 11121111 122223333333332221 2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-----cchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch
Q 000049 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2629)
Q Consensus 1882 ~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~-----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~ 1956 (2629)
.+..+....-...++.+..++.-+.+.|.++...-. ......+...+...+++.....+...+.++..++..++.
T Consensus 651 ~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 651 QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH
Confidence 222222222222345578899999999999887611 123455666666667777777888899999988887763
Q ss_pred hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCch-hHHHHHHHHHHhhhccC
Q 000049 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTA 2035 (2629)
Q Consensus 1957 ~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ 2035 (2629)
....++...+|.+.-.+.+.+...|..|..++-.+... -..+..+++. ...
T Consensus 731 -e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i-------------~~~~d~g~e~~~~~-------------- 782 (1176)
T KOG1248|consen 731 -EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI-------------QSSLDDGNEPASAI-------------- 782 (1176)
T ss_pred -HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH-------------HhhhcccccchHHH--------------
Confidence 33445566666666666888888888887776655420 0001111110 001
Q ss_pred cCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhh----cccccHH
Q 000049 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV----IDEEGVE 2111 (2629)
Q Consensus 2036 ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~----~~~~~~~ 2111 (2629)
+.+|+. .+...+..+...++...+-++..++.. ++.+.+.
T Consensus 783 --------------------------------lnefl~----~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 783 --------------------------------LNEFLS----IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred --------------------------------HHHHHH----HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 111222 222222222222332224444444443 3456688
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchh-hhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccc
Q 000049 2112 SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190 (2629)
Q Consensus 2112 ~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~-~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~ 2190 (2629)
.+++.+...+.+..+.++.+|+..+..++...+. .+.+|.+.+++.++.+..|....+|.....-+..+++..+.+.+.
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 8999999999999999999999999999887664 478899999999999999999999999999999999998877666
Q ss_pred chHHH
Q 000049 2191 SYIKV 2195 (2629)
Q Consensus 2191 ~l~~~ 2195 (2629)
.+++.
T Consensus 907 ~~~pe 911 (1176)
T KOG1248|consen 907 SFLPE 911 (1176)
T ss_pred hhCHH
Confidence 65553
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-07 Score=123.67 Aligned_cols=759 Identities=15% Similarity=0.130 Sum_probs=416.8
Q ss_pred HHHHHHHHhhhCCC----CchhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCC
Q 000049 1640 ARAIGSLIRGMGEE----NFPDLVSWLLDALKS-DNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQR 1709 (2629)
Q Consensus 1640 ~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~-~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~ 1709 (2629)
+.+|..+...++.. .|.+++..+...+.. ..+..++..+..+|+.++..-+.+.| ...+-.++...-+..
T Consensus 72 ~~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~ 151 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKK 151 (1176)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCc
Confidence 34444455544432 345555555555542 22344666777788888776555544 233445555666778
Q ss_pred hhhHHHHHHHHHHhhhhhc---cchHhhHHhHHHHHHhhcCCCC-hhHHHHHHHH---HHHHHHHhhhchhhhHHHHHhh
Q 000049 1710 ASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADEN-ESVRDAALGA---GHVLVEHYATTSLPLLLPAVED 1782 (2629)
Q Consensus 1710 ~~vR~~a~~~l~~L~~~~g---~~f~p~l~~ii~~ll~~L~d~~-~~VR~~al~a---l~~iv~~~~~~~i~~llp~l~~ 1782 (2629)
|.+|..+...+..+...-+ ..-.|-...+...+++.+.... +......++. ++..+..++...++.+-..+..
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 8888888777766554111 1111222222222222222111 1111222222 3333334455566666667777
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc---cCccHH
Q 000049 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR---SDVSLS 1859 (2629)
Q Consensus 1783 ~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~---~D~~~~ 1859 (2629)
.+...+..++..+++++..+....++ ... .+...+++..++... +|.-..
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~--------------~l~-------------a~~~a~lL~al~~l~ps~~D~~~t 284 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPT--------------ALA-------------AELNARLLTALMTLSPSENDDLLT 284 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCC--------------cch-------------HHHHHHHHHHHHHhCCCccchHHH
Confidence 77777777888899988888754321 000 011123333333322 222111
Q ss_pred HH--HHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH-HHhhhcCCCC
Q 000049 1860 VR--QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPS 1936 (2629)
Q Consensus 1860 VR--~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp-~L~~~L~d~~ 1936 (2629)
+. ..-......++...+.......|.+++.++..+.+..++.-+.+.+++.++...... +.+.+-. .+..++.-+.
T Consensus 285 ~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf 363 (1176)
T KOG1248|consen 285 VAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKF 363 (1176)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchH
Confidence 10 001111122333345555667788888888888888888888888888887754322 2222222 2444555555
Q ss_pred hhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcC
Q 000049 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2629)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2629)
..+-..+...+..+.+.+|+ ...+++...+..+...=.+++..-+..--.++|.-...+|+..+=.++|-=+.......
T Consensus 364 ~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~ 442 (1176)
T KOG1248|consen 364 HAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSF 442 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcccccccc
Confidence 55556666677777777765 33444444444443322334433344455677887888888766666664331111111
Q ss_pred chhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhc------CCCC--H
Q 000049 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM------GDDD--M 2088 (2629)
Q Consensus 2017 ~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L------~~~~--~ 2088 (2629)
.+ .-|+|.|.+. +-|..+.-|...++|...+.. .... .
T Consensus 443 ~R-------------------sWLLPvLR~~---------------i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~ 488 (1176)
T KOG1248|consen 443 TR-------------------SWLLPVLRDY---------------IIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQV 488 (1176)
T ss_pred ch-------------------hHhHHHHHHh---------------hccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcH
Confidence 11 1122222211 123444445555555444332 1111 1
Q ss_pred -HHHHHHHHHHHHHHhhc----cc-ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc---------hhhhhhhHHH
Q 000049 2089 -DVQSLAKEAAETVTLVI----DE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS---------KLYLVDEAPN 2153 (2629)
Q Consensus 2089 -~vr~~a~~al~~l~~~~----~~-~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~---------~~~~~~~~~~ 2153 (2629)
.++....+.|+.+-.-+ |. ..+..+-+.+...+... +..|...|.+|..+.+.. ...++.|..+
T Consensus 489 ~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Akn 567 (1176)
T KOG1248|consen 489 SLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKN 567 (1176)
T ss_pred HHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhH
Confidence 12222222232222211 11 23666666676666443 589999999999887653 1346778888
Q ss_pred HHHHHHHHhcCC------ChhHHHHHHHHHH-HHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCc-----ccccCC
Q 000049 2154 MISTLIVLLSDS------DSTTVAAAWEALS-RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP-----ILIPGF 2221 (2629)
Q Consensus 2154 il~~Ll~ll~d~------d~~V~~~a~~aL~-~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~-----~~l~g~ 2221 (2629)
.++.++...... ....+...+.... ..+...+++....+...+........+.... .+... ..+...
T Consensus 568 fL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~-~~~~slLdl~~~~a~~ 646 (1176)
T KOG1248|consen 568 FLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVAS-FKTLSLLDLLIALAPV 646 (1176)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhh-HHHHHHHHHHHhhhcc
Confidence 999999887633 2234444444444 4444445444333333332222111110000 00000 000000
Q ss_pred CCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC-hhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHH
Q 000049 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS-EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 2300 (2629)
Q Consensus 2222 ~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~-~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~ 2300 (2629)
....++..+..+.-....+.+..++.-+...|..++..-+ ......++..|...|...++. .....+...+.+|..+.
T Consensus 647 ~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 647 QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLL 725 (1176)
T ss_pred ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 1112333333111122223467788888999999887611 112333444444444444443 35678899999999999
Q ss_pred HhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--------cC---ChhHHHHHHHHhhhcCCHHHHHHH
Q 000049 2301 RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--------ST---RVDPLVGDLLSSLQVSDAGIREAI 2369 (2629)
Q Consensus 2301 ~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~--------~~---~~~~ll~~Ll~~l~~~d~~vr~~~ 2369 (2629)
+..+.....|+|.+++-++=++.+.|...|..|..||-.+..+ .| .+++++..|-.++-....-++.+-
T Consensus 726 ~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 726 KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 9999777788999888888778777999999999999888632 12 456667777666544334444444
Q ss_pred HHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHH----HhhcCCCCchh
Q 000049 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL----LNLASSPSWAA 2445 (2629)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l----l~~~~~~~~~~ 2445 (2629)
+-|+..++...+..++.++...+++.+...+.+....++.+|...+..++..+|+..+.++++++ +.|........
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 88999999999998999999999999999999999999999999999999999987766666544 45544444333
Q ss_pred hHhHHHHHHHHHhhCCccc
Q 000049 2446 RHGSVLVFATFLRHNPSAI 2464 (2629)
Q Consensus 2446 ~~~~~~~l~~~l~~~p~~~ 2464 (2629)
|...-..+-.+++.++-..
T Consensus 886 r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHH
Confidence 4333334445555554433
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-07 Score=117.49 Aligned_cols=712 Identities=18% Similarity=0.199 Sum_probs=353.5
Q ss_pred hhhhhhHHHHHHHhhcCCCHH--HHHHHHHHHHHHhhhcCCCCcccchHh---hhHHHHHHHhc------CCCHHHHHHH
Q 000049 1571 APSLALLVPIVHRGLRERSAE--TKKKAAQIVGNMCSLVTEPKDMIPYIG---LLLPEVKKVLV------DPIPEVRSVA 1639 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~--vr~~a~~~l~~l~~~~~~~~~l~~~l~---~ll~~L~~~L~------d~~~~VR~~A 1639 (2629)
+|.+..++|.+...+.....+ .-..+.+.+..+|+.-|. +.+..++| .-+..+...++ ...++.|...
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgy-K~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryil 145 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGY-KAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYIL 145 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccc-hhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 344555555554444332111 223444556666665332 33222222 12222333333 2357777777
Q ss_pred HHHHHHHHhh------hCC-----CC--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh-hChhHHHhHhHHHHHhh
Q 000049 1640 ARAIGSLIRG------MGE-----EN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNC 1705 (2629)
Q Consensus 1640 ~~aL~~l~~~------~g~-----~~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~-~g~~~l~~llp~l~~~l 1705 (2629)
..-+..++.. +.+ +. +..++......+.... ..|..++..++.+... -+.+.+..++..++..-
T Consensus 146 LlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~--~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~ 223 (1133)
T KOG1943|consen 146 LLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG--ILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCP 223 (1133)
T ss_pred HHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHcccccHHHHHHHHHHHhhccc
Confidence 7777666542 111 11 1222222222333332 3566677777766532 22333455555555443
Q ss_pred cCCCh--hhHHHHHHHHHHhhhhhc-cchHhhHHhHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhchhhhHHHHH
Q 000049 1706 SHQRA--SVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSLPLLLPAV 1780 (2629)
Q Consensus 1706 ~~~~~--~vR~~a~~~l~~L~~~~g-~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~iv~~~~~~~i~~llp~l 1780 (2629)
+...+ ..+-+.+..+..+.+... ++..||....+..+-..-.+.+. -+|+ .+-.+++.+|-.
T Consensus 224 s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrK----llvKl~QRiGlv--------- 290 (1133)
T KOG1943|consen 224 STETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRK----LLVKLVQRIGLV--------- 290 (1133)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHH----HHHHHHHHhhhe---------
Confidence 33222 255677777777666654 34556655555444332222221 1221 122222211110
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHhhc-CCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHH
Q 000049 1781 EDGIFNDNWRIRQSSVELLGDLLFKVA-GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2629)
Q Consensus 1781 ~~~l~d~~~~vR~sa~~ll~~ll~~~~-~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2629)
.-.-...+||.....-.+.+.+ ..-+ +.+.+..... +++|+++. ..+ .+.++..++..++|.+..
T Consensus 291 ~l~prs~sWrY~rg~rsl~~nl-~~~s~~~~~~~~~~~-~d~e~edv----~ei--------vE~vie~Lls~l~d~dt~ 356 (1133)
T KOG1943|consen 291 SLKPRSPSWRYSRGTRSLASNL-DPDSFAPSEPVILQQ-DDDEGEDV----PEI--------VEFVIEHLLSALSDTDTV 356 (1133)
T ss_pred ecCCCCcchhhhcccchhhhcc-CccccccCccccccc-cccccccc----HHH--------HHHHHHHHHHhccCCcch
Confidence 0111346898654433222222 1110 0111111111 12222211 112 224556666778999999
Q ss_pred HHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh--ccchhhhHHHHHhhhcCC--
Q 000049 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GERVLPSIIPILSRGLKD-- 1934 (2629)
Q Consensus 1860 VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-~~~R~~A~~~L~~lv~~~--~~~~l~~llp~L~~~L~d-- 1934 (2629)
||-.|++.++.+....|.. .....+..++..++--+ +..=..|+-+|+++...- -+..++.++|.+..++.-
T Consensus 357 VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~ 433 (1133)
T KOG1943|consen 357 VRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDV 433 (1133)
T ss_pred hhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998854 44455555666554322 223335666777776532 122456888888876652
Q ss_pred ------CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000049 1935 ------PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR-TALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2629)
Q Consensus 1935 ------~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~-~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2629)
....+|-++|+.+-.+...+.+..+.+++..+.+.+. .++-|++-.+|.+|..||-. .+|...
T Consensus 434 ~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE---~VGR~~------- 503 (1133)
T KOG1943|consen 434 RRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE---NVGRQG------- 503 (1133)
T ss_pred hhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH---HhccCC-------
Confidence 3356899999999888888899999999988888866 47789999999998777654 344310
Q ss_pred HHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCC
Q 000049 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2629)
Q Consensus 2008 Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~ 2087 (2629)
.+|.-++.... .+-.+++..+.
T Consensus 504 ----------------------------n~p~Gi~Lis~-----~dy~sV~~rsN------------------------- 525 (1133)
T KOG1943|consen 504 ----------------------------NFPHGISLIST-----IDYFSVTNRSN------------------------- 525 (1133)
T ss_pred ----------------------------CCCCchhhhhh-----cchhhhhhhhh-------------------------
Confidence 00110000000 01112222111
Q ss_pred HHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC
Q 000049 2088 MDVQSLAKEAAETVTLVID--EEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164 (2629)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~--~~~~~~ll~~Ll~~-l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d 2164 (2629)
|...+...+. +.+..++++.++.. +.+-|..+|..++++|..+....+..+..| .++.++.....
T Consensus 526 ---------cy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~---~L~~lld~~ls 593 (1133)
T KOG1943|consen 526 ---------CYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADY---VLPPLLDSTLS 593 (1133)
T ss_pred ---------HHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhccc---chhhhhhhhcC
Confidence 1111111111 12234444444443 556666777777777777665555444433 34555565666
Q ss_pred CChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc-CC-
Q 000049 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GS- 2242 (2629)
Q Consensus 2165 ~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~-~~- 2242 (2629)
.+...|....-+.+.++....+-. |.+.....+. + .++..++|.+...-.+ |.
T Consensus 594 ~~~~~r~g~~la~~ev~~~~~~l~-~~~~~l~e~~------------------i------~~l~~ii~~~~~~~~~rg~~ 648 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGALRKLE-PVIKGLDENR------------------I------AGLLSIIPPICDRYFYRGQG 648 (1133)
T ss_pred CChHHhhhhHHHHHHHHHHhhhhh-hhhhhhHHHH------------------h------hhhhhhccHHHHHHhccchH
Confidence 666666666666666665443321 0000000000 0 0111122222211111 11
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhchhh-hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000049 2243 AELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2629)
Q Consensus 2243 ~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~ 2321 (2629)
.-.|...+..+-.+... ....+..++.. ...-+...+.. +..+|.++...++.++...-..=.-+...++...+..
T Consensus 649 ~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~ 725 (1133)
T KOG1943|consen 649 TLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSR 725 (1133)
T ss_pred HHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Confidence 11222222222222211 11111122211 11112222322 3378999999999888643111011112477777777
Q ss_pred cCCC-CHHHHHHHHHHHHHHH--hccCChhHHHHH-HHHhhhc-CCHHHHHHHHHHHHHHHhhcCCCc----ChHHHHHH
Q 000049 2322 LQDS-TRTVRSSAALALGKLS--ALSTRVDPLVGD-LLSSLQV-SDAGIREAILTALKGVLKHAGKSV----SSAVKIRV 2392 (2629)
Q Consensus 2322 L~d~-~~~vR~~Aa~aLg~l~--~~~~~~~~ll~~-Ll~~l~~-~d~~vr~~~l~AL~~vi~~~g~~~----~~~~~~~i 2392 (2629)
+.+. ++.+|.-...++|.+- .++.+....+-. ++...-. ..++-|...+.|+..++...+... .+.+++.+
T Consensus 726 ~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~L 805 (1133)
T KOG1943|consen 726 LTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETL 805 (1133)
T ss_pred hcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 7777 7889988888888872 233343333322 2222211 247788889999999988766322 24555555
Q ss_pred HHHHHHhhcCC----CHHHHHHHHHHHHHHHhcCC
Q 000049 2393 YSVLKDLVYHD----DDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2393 ~~~L~~~l~~~----~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+..+.+-..|. ...||++|..++..+...++
T Consensus 806 L~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 806 LNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 55555444443 24699999999988876655
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-09 Score=146.71 Aligned_cols=467 Identities=16% Similarity=0.187 Sum_probs=315.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2629)
....+.+.+.++ +...|..+..++..+...-+ ..+.-++..+.+-+.++++.+|-.|..++..+. +++-...
T Consensus 43 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~ 114 (526)
T PF01602_consen 43 LFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEP 114 (526)
T ss_dssp THHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhH
Confidence 344455566654 78888777776666654333 245567888888999999999988877777664 5666788
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhH
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI 1535 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i 1535 (2629)
++|.+.+.+.+++|.+|+.|+.++..+....|+..... +++.+..++.|+++.|+.+|+.++..+ +.-.+ +.+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~ 190 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH
Confidence 89999999999999999999999999998888765432 688888999999999999999999988 21111 234
Q ss_pred HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhh--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000049 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2629)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l--~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2629)
..+++.+.+.+.++++..+ ..++.+.. +.. ...... ..+++.+...+.+.++.+...+..++..+...
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------ 261 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRR--YAP-MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------ 261 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTT--STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHh--ccc-CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------
Confidence 5666666666677877665 45555432 111 112222 46778888888777788888888777765431
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh
Q 000049 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2629)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~ 1692 (2629)
.+....+++.+..++.++++.+|..+..++..++....+... . ....+..+..+++...|..+...+..++. .+
T Consensus 262 -~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~ 335 (526)
T PF01602_consen 262 -PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN---ES 335 (526)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-----HH
T ss_pred -hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-h-hhhhhheecCCCChhHHHHHHHHHhhccc---cc
Confidence 126778899999999999999999999999999876522222 1 11223345544456678777776666654 34
Q ss_pred HHHhHhHHHHHhhcC-CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000049 1693 YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2629)
Q Consensus 1693 ~l~~llp~l~~~l~~-~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~ 1771 (2629)
....+++.+.+.+.+ .+..+|..++..++.++..++..+..|++.++.. +....+.+...+...+..++...+..
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~l----l~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKL----LEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHH----HHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHh----hhhccccccchHHHHHHHHhhcChhh
Confidence 556778888888744 4788999999999999998877665555444444 34344445444444444443332111
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHh
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2629)
+. ..+..++.
T Consensus 412 --------------------~~--------------------------------------------------~~l~~L~~ 421 (526)
T PF01602_consen 412 --------------------RE--------------------------------------------------KILKKLIE 421 (526)
T ss_dssp --------------------HH--------------------------------------------------HHHHHHHH
T ss_pred --------------------hH--------------------------------------------------HHHHHHHH
Confidence 00 01111111
Q ss_pred hcc-CccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHh
Q 000049 1852 VRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILS 1929 (2629)
Q Consensus 1852 ~~~-D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~ 1929 (2629)
... -....++..++.++|.+....+. .. ..+.++..+...+...+..+|.....++.++....+.. ..+.+.+.+.
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 111 12345677777788777654433 11 56677777777787778889999999999999887653 5678888888
Q ss_pred hhcC--CCChhHHHHHHHHHH
Q 000049 1930 RGLK--DPSASRRQGVCIGLS 1948 (2629)
Q Consensus 1930 ~~L~--d~~~~vR~~a~~aL~ 1948 (2629)
.... +.++++|+.++.-+.
T Consensus 500 ~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 500 SLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp CHHHHS-SSHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHH
Confidence 8777 789999999887554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-09 Score=147.17 Aligned_cols=478 Identities=15% Similarity=0.151 Sum_probs=322.6
Q ss_pred ccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 000049 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2629)
Q Consensus 1332 ~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~ 1411 (2629)
|.+.......++..+. +++...|+.+...+..+...-+.... -+++.+.+-+.++ |+..|-.|+.+++.++ .
T Consensus 37 G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~---l~~n~l~kdl~~~-n~~~~~lAL~~l~~i~---~ 108 (526)
T PF01602_consen 37 GYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLI---LIINSLQKDLNSP-NPYIRGLALRTLSNIR---T 108 (526)
T ss_dssp T---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHH---HHHHHHHHHHCSS-SHHHHHHHHHHHHHH----S
T ss_pred CCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHH---HHHHHHHHhhcCC-CHHHHHHHHhhhhhhc---c
Confidence 4444555555555555 66788898888888877764433222 3667777778876 7899988888777766 2
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh-hHHHHHhhhccCChhhhHHHHHHHHHHHhhCc
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~-ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2629)
......++|.+.+++.|+++.||+.|..++..+... .++.+.. ++|.+.+.+.+.++.++.+|+.++..+ ...+
T Consensus 109 ---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 109 ---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred ---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 244567888899999999999999999999998876 3444444 799999999999999999999999888 4444
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccc
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN 1567 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~ 1567 (2629)
+.....++.++..+.+.+.+.+|.++....+.+..++..-. ... ..+++.+...+.+.+..+. +|+..+... .+
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l--~~ 260 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL--SP 260 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh--hc
Confidence 44345567778888888899999999888888887764321 122 4577777777765555555 566655421 11
Q ss_pred cCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
..+.+..+++.+.+.+.++++++|..+.+.+..++... .+.+......+..+..++++.+|..+...+..++
T Consensus 261 --~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~------~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 261 --SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN------PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp --SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC------HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred --chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc------chhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 12256788999999999999999999999999887642 1222222223333444888999999999998887
Q ss_pred hhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhh
Q 000049 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2629)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~ 1727 (2629)
.. .....+++.|...+.+..+...|..++..++.++..... ..+.+++.+++.+...+..+...+...+..+....
T Consensus 333 ~~---~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 333 NE---SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp -H---HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred cc---cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 63 346678888888885443344788888899988887744 34667777888888777888888888888777654
Q ss_pred ccchHhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhh-chhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHh
Q 000049 1728 GVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYAT-TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2629)
Q Consensus 1728 g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~iv~~~~~-~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~ 1805 (2629)
++.. ..++..+...+.+ .++.++..++..++........ .....++..+.+...+++..+|...+.++..+...
T Consensus 409 ~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 409 PELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp TTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred hhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 4422 2345555655554 4456666666666655444332 13445666676666777778888888877777643
Q ss_pred hcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhcc--CccHHHHHHHHHHHHHH
Q 000049 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVRQAALHVWKTI 1871 (2629)
Q Consensus 1806 ~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~--D~~~~VR~aA~~~l~~l 1871 (2629)
.+. . +..+.++..+..... +.+.+||+.|...|.-+
T Consensus 485 ~~~--------------~----------------~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 485 NPE--------------N----------------EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp SCS--------------T----------------THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred CCc--------------h----------------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 210 0 011123333333333 77899999999888644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-09 Score=138.36 Aligned_cols=433 Identities=14% Similarity=0.121 Sum_probs=286.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHH
Q 000049 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPN 2153 (2629)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~ 2153 (2629)
-.++.+.+-+.++++.+|..++.++..+- ..+-+..+++.+.+.+.|.++.||..|+.++..++...+..+.. ..
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~ 179 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QD 179 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cc
Confidence 45677888889999999999888876552 23456778888899999999999999999999998766533211 24
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCc--ccccCC--CCcccchh
Q 000049 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP--ILIPGF--CLPKALQP 2229 (2629)
Q Consensus 2154 il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~--~~l~g~--~l~k~l~~ 2229 (2629)
+++.|..+++|.|+.|..+|..+|..+....+.. +......+++.+....+. ..|.+.. ..+... ........
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~--~EW~Qi~IL~lL~~y~P~~~~e~~~ 256 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPEC--NEWGQLYILELLAAQRPSDKESAET 256 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhcCCCCcHHHHH
Confidence 5666777889999999999999999997655432 222233333333322111 1122211 001110 00122334
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP 2309 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p 2309 (2629)
++..+...+.+.++.+...|+.++-.+....++..++..+..+..|++.++. .+++++..++..+..++.+.+..+.+
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~~P~lf~~ 334 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR--RDAETQYIVCKNIHALLVIFPNLLRT 334 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHHHHHHHHHHHHHHHCHHHHHH
Confidence 6666777777888888888888888776554434455555667788888754 36789999999999888876644333
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHH
Q 000049 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2629)
Q Consensus 2310 ~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2629)
-...|.-..+|++. +|......|-.++. ..++..++.+|...+.+.|.+.+..++.|++.+..+. +...
T Consensus 335 ----~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-----~~~a 403 (746)
T PTZ00429 335 ----NLDSFYVRYSDPPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-----DSVA 403 (746)
T ss_pred ----HHHhhhcccCCcHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-----hHHH
Confidence 24556566678765 89988888887754 4578899999999888888999999999999998764 3456
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc---CCCCchhhHhHHHHHHHHHhhCCccccC
Q 000049 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA---SSPSWAARHGSVLVFATFLRHNPSAISM 2466 (2629)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~---~~~~~~~~~~~~~~l~~~l~~~p~~~~~ 2466 (2629)
..+++.|.+.+.+..+ +...+...+..+.+..|... ++..+.... .-.+...+. ++..++.+..+.+-+
T Consensus 404 ~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKa----aiiWILGEy~~~I~~ 475 (746)
T PTZ00429 404 PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKV----SLLWMLGEYCDFIEN 475 (746)
T ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHH----HHHHHHHhhHhhHhh
Confidence 7888888888776544 33445677777777777532 233333221 111222232 333344444433311
Q ss_pred ChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHH
Q 000049 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL--HDDSSEVRRRALSALKSVA 2544 (2629)
Q Consensus 2467 ~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l--~~~~~~vr~~al~~l~~~a 2544 (2629)
...++..+.....++.+.+|-+.+.+..++...... .....+..++..+ .++++|+|.-|..-.+-+.
T Consensus 476 ---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-------~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 476 ---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-------GMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred ---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 234555555666677889999999999998776421 2344555566432 4688899999987666554
Q ss_pred h
Q 000049 2545 K 2545 (2629)
Q Consensus 2545 ~ 2545 (2629)
.
T Consensus 546 ~ 546 (746)
T PTZ00429 546 K 546 (746)
T ss_pred C
Confidence 3
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-07 Score=125.37 Aligned_cols=492 Identities=12% Similarity=0.074 Sum_probs=307.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCc-chhhHHH
Q 000049 1226 ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVDK 1304 (2629)
Q Consensus 1226 ~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~-l~~i~~~ 1304 (2629)
.+++...|..++.-++..+ ..|.+ +..+++-+-+.+... +-.+|.-+...+...+ ..+|. .--.+..
T Consensus 42 ~s~~~~~kk~alKkvIa~m-t~G~D-vS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaINt 109 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANM-TMGRD-VSYLFVDVVKLAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVNT 109 (746)
T ss_pred HCCCHHHHHHHHHHHHHHH-HCCCC-chHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHHH
Confidence 3445554444444333322 24544 344555444455432 2345654444433332 33444 3345788
Q ss_pred HHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHH
Q 000049 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384 (2629)
Q Consensus 1305 L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~ 1384 (2629)
+.+-+.++++.+|..+.++++.+. ..+-.+.++..+...+ .+.+.-+|+.|+.|+..+.+..+ +.+....+.+.|.
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~ 185 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIR--VSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLV 185 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHH
Confidence 899999999999999988887653 1111233333344444 44567899999999999987544 3332335778888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HHhHHhhHHH
Q 000049 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLPS 1462 (2629)
Q Consensus 1385 ~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp~ 1462 (2629)
+++.++ |+.+.-.|+.+|..+.+..++.+. .....+..++..+.+-++.-+-...+.+ ....+ ......++..
T Consensus 186 ~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~ 260 (746)
T PTZ00429 186 ELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTR 260 (746)
T ss_pred HHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHH
Confidence 888876 899999999999998876654332 2344556666666655555554444443 22211 2234677888
Q ss_pred HHhhhccCChhhhHHHHHHHHHHHhhC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHH
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2629)
+...|.+.+.-+..+++.++..+.... +......+..+.+.++.+ ..+++++|-.+.+.+..+....+ ..+...+..
T Consensus 261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~ 338 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDS 338 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHh
Confidence 888888888888888888887776432 333333344444555555 45678999999999988876432 233445666
Q ss_pred HHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhh
Q 000049 1542 LLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2629)
Q Consensus 1542 Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~l 1620 (2629)
+.-..+||.. ++ ..++.+... .++.....++..|..+..+.+.+.++.+..++|.++..+. ...+.+
T Consensus 339 Ff~~~~Dp~y-IK~~KLeIL~~L-----ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~c 406 (746)
T PTZ00429 339 FYVRYSDPPF-VKLEKLRLLLKL-----VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPDC 406 (746)
T ss_pred hhcccCCcHH-HHHHHHHHHHHH-----cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHHH
Confidence 6666678865 55 567666431 2334556788888888889899999999999999987542 245667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh--ccCCChHHHHHHHHHHHHHHHhhChhHHHhHh
Q 000049 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2629)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L--~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ll 1698 (2629)
+..|..++.+... +...++..+..+.+...+.+ +++.|...+ ..-.+...|...++.+|+.+..... ...++
T Consensus 407 V~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~L 480 (746)
T PTZ00429 407 ANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDII 480 (746)
T ss_pred HHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHHH
Confidence 7788888876544 34467788888877665432 455555433 1222344566667778888765432 24455
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhc-C-CCChhHHHHHHHHHH
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGH 1762 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L-~-d~~~~VR~~al~al~ 1762 (2629)
..++....+.+..||-..+.+...+....+.+. ...+..+++.+ . +++.+||+.|.--.+
T Consensus 481 ~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~----~~~l~~vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 481 QRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM----EPQLNRVLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 455555566788899888888777766655433 33444455433 3 466799998865444
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-06 Score=113.17 Aligned_cols=474 Identities=14% Similarity=0.161 Sum_probs=272.1
Q ss_pred ChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHH-HHHHH--------HHHhhcC
Q 000049 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV-AEAAE--------DIWDRYG 1125 (2629)
Q Consensus 1055 ~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~a~--------~~w~~~~ 1125 (2629)
..+++.+.+.+++.+|+..|++||++|.+.... |.... ..+-+...|..+.+ |..|. +.|....
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgFv~--~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGFVS--SLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcHHH--HHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 346788899999999999999999999876522 22222 23334555555554 44432 3588662
Q ss_pred -----CCCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000049 1126 -----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2629)
Q Consensus 1126 -----~~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 1194 (2629)
+.++++ + ..++.++.+....+|-....++-.++ ..+|+.|+.++.......+ +. ...+-
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----s~------~~~~v 144 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----SQ------DANHV 144 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----Cc------chhhH
Confidence 223333 3 67888888889999999998887765 4788888888777765421 21 11344
Q ss_pred hHHHHHHHHhhhhcC--C----CChh----HHHHHHHh---hhcCCCcHHHHH---HHHHHHHHHHHh------hCccch
Q 000049 1195 QGIALALHSAADVLR--T----KDLP----VIMTFLIS---RALADTNADVRG---RMLNAGIMIIDK------HGRDNV 1252 (2629)
Q Consensus 1195 ~~~~~~l~~l~~~~~--~----~~~~----~i~~~li~---~~l~d~~~~Vr~---~~~~a~~~~i~~------~g~~~~ 1252 (2629)
.++..++..+++..+ . +.+. .+++.+.+ +.+.+.+..... ..+..+...+-. ...+.+
T Consensus 145 y~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f 224 (1010)
T KOG1991|consen 145 YGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETF 224 (1010)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhH
Confidence 677778888876432 1 1121 22333322 334444333222 222222222111 123344
Q ss_pred hhhHHHHHHHhcccCCChh--hhhh---------HHHHHHHHHHHHHhhhc-cCCCc--------------chhhHHHHH
Q 000049 1253 SLLFPIFENYLNKKASDEE--KYDL---------VREGVVIFTGALAKHLA-KDDPK--------------VHAVVDKLL 1306 (2629)
Q Consensus 1253 ~~Ll~~~~~~l~~~~~~~~--~~~~---------vr~~~v~~~~~La~~l~-~~~~~--------------l~~i~~~L~ 1306 (2629)
..-|.+|-..++.+-+.+. .+.. .+.=+...+.++-..+. +.... .+.|.+.++
T Consensus 225 ~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 225 TSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655433221 1111 22223443444333332 21111 122222222
Q ss_pred hhc---CC---CcHHHHHHHHHhhhhhH------hhhccchHHHHHH-HHHHhhc---------C--------------C
Q 000049 1307 DVL---NT---PSEAVQRAVSSCLSPLM------QSMQDEAPTLVSR-LLDQLMK---------S--------------D 1350 (2629)
Q Consensus 1307 ~~L---~~---~~~~Vq~~~~~~L~~l~------~~~~~~~~~ll~~-ll~~L~~---------~--------------~ 1350 (2629)
+.+ .. -++.|-.-+..-+...+ +.++.....++.. ++..+.- . +
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 222 11 12222221111111111 1111111111111 1111110 0 1
Q ss_pred CHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHhcc--CchhHHH-H
Q 000049 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVI-Q 1420 (2629)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~Al~al~~La~~~~~--~~~~~v~-~ 1420 (2629)
-+..+.+|...+-.+++..|.+.+. ++++++.+.+. +.++++..+||+.+++++++.+.+ .+...+. -
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f 462 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF 462 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH
Confidence 1234557888888999999988886 78888887765 234789999999999999987764 2333343 3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHHh-HHhhHHHHHhhhc-cCChhhhHHHHHHHHHHHhhCc---hhhh
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p---~~l~ 1494 (2629)
++++++..+.++.-..|..|+..+..+. ..++... ....+......|. +.+-.+|..|..+|..+....+ ..++
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 6788888999999999999998888887 4555553 3667777777777 7778999999999999888655 4488
Q ss_pred hhccchHHHHhhhhcCCCHHHHHHHHHHH-HHHhhhcCc--hhH-HhHHHHHHhccC
Q 000049 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMGLT 1547 (2629)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~lvp~Ll~~l~ 1547 (2629)
+++|.++..++.+.++.+.+.-....+.+ +.+++.+.. .++ +.+...+++.+.
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999887666555444433 345544431 122 555556666655
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-09 Score=134.48 Aligned_cols=342 Identities=18% Similarity=0.166 Sum_probs=250.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----hHHhhHHHHHhhhc-cCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
.+.++..+...++..+-.+..+++.+.+.-... ....++|.+++.|. +.+...+..|.++|..+|.+..++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 444555555455555666666776665533211 12578999999997 456888999999999999887766544
Q ss_pred hc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h-hH--HhHHHHHHhccCCCCh--hHHHHHHHHHhcccccc
Q 000049 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNT 1568 (2629)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~lvp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~ 1568 (2629)
.. .+.+|.+..++.+++..|++.|.+||++++..-.. + ++ ...++.|+..+..++. ..|.+..+|.. ++..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN--lcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN--LCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH--HHcC
Confidence 33 46789999999999999999999999999865321 1 11 4567778888776654 55666666653 2222
Q ss_pred C-Ch---hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1569 V-DA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1569 ~-~~---~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
. .. .....++|.|.+.+.+.+.++...|+.++..+... .++.+.- .-..++|.+..+|.++.+.|+..|.+++
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 2 22 34567899999999999999999999999998763 2222211 1235789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-HhHhHHHHHhhcCCChhhHHH
Q 000049 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1644 ~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
|.++.+.+.. .-...+|.|...+........|..++..++.+..+.... .+ ..++|.++..++..+..+|..
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 9987644332 124667888777775555557889999999998854332 11 578999999999999999999
Q ss_pred HHHHHHHhhhhhccchHhhHHh--HHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1716 YLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1716 a~~~l~~L~~~~g~~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
+..+++.++.....+-..|+-+ +++++...|.-.+..+-..+++++..+.+.
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9999999887665666677643 899999999777777767788888877653
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-05 Score=99.85 Aligned_cols=308 Identities=15% Similarity=0.180 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhCCC--hhhhHh-hhHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hccc-ccHHHHHHHHHhhcC-CCCh
Q 000049 2053 NAHALGALAEVAGPG--LNFHLG-TILPALLSAMGDDDMDVQSLAKEAAETVTL-VIDE-EGVESLVSELLKGVG-DNQA 2126 (2629)
Q Consensus 2053 ~~~aL~~La~~~g~~--l~~~l~-~il~~Ll~~L~~~~~~vr~~a~~al~~l~~-~~~~-~~~~~ll~~Ll~~l~-d~~~ 2126 (2629)
+.+++|+|++..-.. +...+. -+++.++-.+.++..-+|..+++.++.+.. .+.. ..+...+....+.+. |.+.
T Consensus 438 AL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~l 517 (1010)
T KOG1991|consen 438 ALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNEL 517 (1010)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcC
Confidence 456777777654321 222222 234455556678888899999999998873 3333 447778888888887 7888
Q ss_pred hHHHHHHHHHHHHHHhch---hhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhh
Q 000049 2127 SIRRSSAYLIGYFYKNSK---LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2629)
Q Consensus 2127 ~vR~~a~~~L~~l~~~~~---~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~ 2203 (2629)
.||..|+.++..|..+.. ..++++++.+++.|+.+.++-+.+..... +..++...+.+..|.-...
T Consensus 518 PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v---me~iV~~fseElsPfA~eL-------- 586 (1010)
T KOG1991|consen 518 PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV---MEKIVCKFSEELSPFAVEL-------- 586 (1010)
T ss_pred chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHHhhchhHHHH--------
Confidence 999999999999987654 44899999999999999876554433322 2222222211111100000
Q ss_pred hhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHh
Q 000049 2204 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS---GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII 2280 (2629)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~---~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l 2280 (2629)
.+.+...|.+.+.+ .++..-..+..++|
T Consensus 587 -----------------------~q~La~~F~k~l~~~~~~~~~~ddk~iaA~G-------------------------- 617 (1010)
T KOG1991|consen 587 -----------------------CQNLAETFLKVLQTSEDEDESDDDKAIAASG-------------------------- 617 (1010)
T ss_pred -----------------------HHHHHHHHHHHHhccCCCCccchHHHHHHHH--------------------------
Confidence 01111122222221 11112222222222
Q ss_pred cCCCCHhHHHHHHHHHHHHHHhc---CCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----ccCChhHHHHH
Q 000049 2281 GDRFPWQVKSAILSTLSIIIRKG---GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA----LSTRVDPLVGD 2353 (2629)
Q Consensus 2281 ~~~~~~~vk~~al~~L~~L~~~~---~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~----~~~~~~~ll~~ 2353 (2629)
.|.++..++..+ +..++..-|.+.+.+-..|...-.++-..+..-...+.. +.|..=.+++.
T Consensus 618 -----------iL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~l 686 (1010)
T KOG1991|consen 618 -----------ILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLEL 686 (1010)
T ss_pred -----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHH
Confidence 222222222222 111122223333333333333322222222222222211 23444456677
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHhhcCCCc--ChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCChhHHHH
Q 000049 2354 LLSSLQVSDAGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLAD 2429 (2629)
Q Consensus 2354 Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2629)
+++.+++....--..++-+|...+...+... .+.|...+++.+...+.+. ++.-...|++.++.+...+.. .+++
T Consensus 687 i~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~~dq 765 (1010)
T KOG1991|consen 687 ILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-LLDQ 765 (1010)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-cHhh
Confidence 7777766555666778888888877655433 2467888889988888874 555667788999998887765 4444
Q ss_pred HHH
Q 000049 2430 LLQ 2432 (2629)
Q Consensus 2430 ~l~ 2432 (2629)
.++
T Consensus 766 ~ip 768 (1010)
T KOG1991|consen 766 YIP 768 (1010)
T ss_pred HhH
Confidence 444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-10 Score=134.21 Aligned_cols=253 Identities=17% Similarity=0.150 Sum_probs=164.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2629)
.+.|...|.+++..||..++..|..+ + .+..++.+.. +.++++..+|..|+.+|+.+-.. .... ...++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~--~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~--~~~~--~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----G--GQDVFRLAIE-LCSSKNPIERDIGADILSQLGMA--KRCQ--DNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----C--cchHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCC--ccch--HHHHH
Confidence 46677778888888998888877543 2 2333333333 44566678899999888875321 1111 14566
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2629)
.|...+.++.++.+|..|+.++|.++.... .+....++.+...+.|+++.||..+..+++.+ +-...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-------~~~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-------NDEAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-------CCHHHHH
Confidence 777664444478888888888888753221 11234566666777888888888888887654 2245677
Q ss_pred HHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHH
Q 000049 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2629)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2629)
.|+..+.+++|.+|+.++..||.+.+.. +.+++.|...++|.++.||..|..+|+.+.. ...+|.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~ 227 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSV 227 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHH
Confidence 7888888888888888888888773322 3566777778888888888888888877643 133444
Q ss_pred HHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhH
Q 000049 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2629)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll 1621 (2629)
|++.+.++ + +|..++.++|.+.. +..+
T Consensus 228 Li~~L~~~---------------------------------------~--~~~~a~~ALg~ig~------------~~a~ 254 (280)
T PRK09687 228 LIKELKKG---------------------------------------T--VGDLIIEAAGELGD------------KTLL 254 (280)
T ss_pred HHHHHcCC---------------------------------------c--hHHHHHHHHHhcCC------------HhHH
Confidence 44444433 2 34456666666532 2356
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHH
Q 000049 1622 PEVKKVLV-DPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1622 ~~L~~~L~-d~~~~VR~~A~~aL~ 1644 (2629)
|.|..++. ++++.|+..+..++.
T Consensus 255 p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 255 PVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHh
Confidence 77777775 677777777776654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=154.96 Aligned_cols=273 Identities=22% Similarity=0.256 Sum_probs=201.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
.++.|+..+.|+++.||..|..++..+. -...+|.|...|.++++.+|..++..|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 4567778889999999999998887763 245778888999999999999999999887643221
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHH
Q 000049 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
.+.+...|+|+++.||.+|+.+|+.+.. .+ ...++..+.|++..+| .++..|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA--GD------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 2456677889999999999999998752 11 1346677889998888 677777641 11 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll 1659 (2629)
.+...+.|.++.+|..++..++.+... . ....+.+..++.|+++.||..|+.+|+.+.. . ....
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778999999999999999887542 1 1135667788889999999999999988632 1 2233
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHH
Q 000049 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2629)
Q Consensus 1660 ~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii 1739 (2629)
+.+...+.++ +..+|..++.+|+.+.. ++.++.+...+.++++.||..+..+|+.+. +. +...
T Consensus 810 ~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRAS-AWQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 4466666654 45688888888876431 234567778888999999999999888751 11 3456
Q ss_pred HHHHhhcCCCChhHHHHHHHHHH
Q 000049 1740 PAILDGLADENESVRDAALGAGH 1762 (2629)
Q Consensus 1740 ~~ll~~L~d~~~~VR~~al~al~ 1762 (2629)
+.+...+.|++.+||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 77778888999999998888765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=131.48 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=189.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
-.+.++..+.|++..||..+..++..+. -..+++.+...+.+++..+|..++.+|+.+...... ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 3556667789999999999998887763 255677777778889999999999999998642110 2356
Q ss_pred HHHHhhh-hcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000049 1501 VPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1501 vp~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
+|.|..+ ++|+++.||..|+.+||.++..-..+ ....++.+...+.|++..+| .+...|+.. . -...+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~------~---~~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVI------N---DEAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhcc------C---CHHHH
Confidence 6777766 78999999999999999986432212 24566677788889988898 456666431 1 13467
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
+.|...+.|.++.+|..|...+|.+.. + -+...+.|...+.|+++.||..|+.+||.+.. +..
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~a 224 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKY--D--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRV 224 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCC--C--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhH
Confidence 899999999999999999999998722 1 23578889999999999999999999988532 477
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhc-CCChhhHHHHHHHHH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~-~~~~~vR~~a~~~l~ 1721 (2629)
+|.|++.+.++. .|..++.+++++.. +..+|.+.+.+. +++..++..+...+.
T Consensus 225 v~~Li~~L~~~~---~~~~a~~ALg~ig~-------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 LSVLIKELKKGT---VGDLIIEAAGELGD-------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHcCCc---hHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 888888887654 56667777776543 256777777775 678888887776654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-09 Score=150.62 Aligned_cols=274 Identities=21% Similarity=0.228 Sum_probs=191.9
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHH
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~ 1380 (2629)
.++.|++.|.|+++.||..+++.|..+- .+..++.|...| +.++..+|..|+.+|..+....+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------h
Confidence 4567888899999999999999887642 244556666555 556789999999999887543221 1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000049 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2629)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2629)
+.+...+.++ ++.+|..|+.+|+.+.. +. ...++..+.|+++.||.+|..++..+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 2444556665 89999999888877541 11 1245667899999999999888876511 2
Q ss_pred HHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHH
Q 000049 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2629)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2629)
+.+...+.++++.+|..++..|+.+.... +..++.|..+++|+++.||.+|..+|+.++.. ....+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 34566788899999999999998875432 12256777888999999999999999888642 12234
Q ss_pred HHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhh
Q 000049 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2629)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2629)
.+...+.|+++.+| .|+..|.... -...++.|...+.|+++.||..+..+|+.+. ++ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~---------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA---------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc---------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 56677778877777 4666664310 1234577777778888888888888887641 11 23
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
..+.|...++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 56667777788888888888887753
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-06 Score=106.05 Aligned_cols=560 Identities=18% Similarity=0.197 Sum_probs=290.4
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHH--------HHHHhhcCC--
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGY-- 1126 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a--------~~~w~~~~~-- 1126 (2629)
+.+-.+|.|.+|+|.++|.+|+.+|....+.. ..-..+.++-. .++..-..|++| ..+|..+..
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~-----~f~~aL~~va~-~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELTE-----GFGVALAEVAA-NKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccch-----HHHHHHHHHHh-CcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 56788999999999999999999999876431 12222333222 223333344443 467875431
Q ss_pred CCCC----C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000049 1127 DFGT----D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2629)
Q Consensus 1127 ~~~~----~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2629)
.-+. + + ..|+..+.+++..+|.+++.++..++. .||+.|++++..+..+... .+...-++
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~~ 147 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIHG 147 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhhh
Confidence 1111 1 2 567788889999999999999998865 7999999999998876431 11235567
Q ss_pred HHHHHHHhhhhcCCCC--------hhHHHHHHHhhhcCCCcHH-----HHHHHHHHHHHHHHhhCc---cchh----hhH
Q 000049 1197 IALALHSAADVLRTKD--------LPVIMTFLISRALADTNAD-----VRGRMLNAGIMIIDKHGR---DNVS----LLF 1256 (2629)
Q Consensus 1197 ~~~~l~~l~~~~~~~~--------~~~i~~~li~~~l~d~~~~-----Vr~~~~~a~~~~i~~~g~---~~~~----~Ll 1256 (2629)
+.+++..+......++ .+.+...+ ......+.. .|..........+..++. ++.+ .++
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f--~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l 225 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIF--ALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQIL 225 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhh--hhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7777777765432111 12211111 111111221 222223334444444443 2222 233
Q ss_pred H----HHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccC-CCcchhhHHHHHhhcC-------------C-------
Q 000049 1257 P----IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLN-------------T------- 1311 (2629)
Q Consensus 1257 ~----~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~-~~~l~~i~~~L~~~L~-------------~------- 1311 (2629)
+ .|+..++..+. ++-..|......+..+...++.. .+.+...++-..+.+. +
T Consensus 226 ~~~~~~l~h~l~~~~g---~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~ 302 (1005)
T KOG2274|consen 226 NQFMDILEHPLQRNDG---SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDAR 302 (1005)
T ss_pred HHHHHHHhhhhccccc---chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccc
Confidence 3 33333333222 22233433334444444433221 2222222111111110 0
Q ss_pred -CcHHHHHHHHHh-------hhhh------HhhhccchHHHHHHH--HHHhh----------------cCC-CHHHHHHH
Q 000049 1312 -PSEAVQRAVSSC-------LSPL------MQSMQDEAPTLVSRL--LDQLM----------------KSD-KYGERRGA 1358 (2629)
Q Consensus 1312 -~~~~Vq~~~~~~-------L~~l------~~~~~~~~~~ll~~l--l~~L~----------------~~~-~~~~R~~A 1358 (2629)
.++.-+..+-.| +..+ ...+....++++..+ ..++. +.+ .+..|..+
T Consensus 303 ~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~ 382 (1005)
T KOG2274|consen 303 YDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISV 382 (1005)
T ss_pred cCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhH
Confidence 011111111111 1111 111111112222111 11111 112 23566666
Q ss_pred HHHHHHHHhhhCcchhhhhcHHHH----HHH-----HhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc
Q 000049 1359 AFGLAGVVKGFGISSLKKYGIAAT----LRE-----GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2629)
Q Consensus 1359 a~~L~~l~~~lg~~~l~~~~i~~~----L~~-----~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l 1429 (2629)
--.+-.++..+|...+. .+.+. +.. ...+...|...++.+.+.+... .++....+...+...+...+
T Consensus 383 rd~~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l 458 (1005)
T KOG2274|consen 383 RDLLLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGL 458 (1005)
T ss_pred HHHHHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhc
Confidence 66667777777765553 23333 211 1223334666655555444443 33223344444444555555
Q ss_pred CC-CCHHHHHHHHHHHHHHHHh--hcHHhHHhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1430 SD-QVVAVREAAECAARAMMSQ--LSAQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1430 ~D-~~~~VR~aa~~al~~i~~~--l~~~~v~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
.. ..|..--.+.-++..+.+. ..+.-...++...+..+.. .....|.+++..+... |.++.+.+.+|.|+..+.
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~--~~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGY--CKVKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhc--cCceeccccchHHHHHHH
Confidence 42 2233322454455555444 3333345555555555543 3445666666665443 467778888999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhH---------HhHHHHHHhccCCCChh--HHHHHHHHHhccccccCChhhh
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEI---------ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i---------~~lvp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~~~~~~l 1574 (2629)
++..+.+.+|-..-.++|...++.- |++ ..++..+.+..+||.-. +..+++.+... .....+..
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~d--pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~---~~~~g~m~ 611 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLD--PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI---AANYGPMQ 611 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccC--hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHhhcchH
Confidence 9999999999999999999988763 322 23344455666777321 12444444431 11223455
Q ss_pred hhHHHHHHHhhcCCC----HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh
Q 000049 1575 ALLVPIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~----~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
...+|.+..-+.... ...-..+.+++..+.+. +.+.--........|.+.++.- ..+.++-..+.+|+..++..
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 667788877776544 45666678888877775 2222223344556666666644 34567778888999888875
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-08 Score=124.59 Aligned_cols=346 Identities=18% Similarity=0.164 Sum_probs=238.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhH
Q 000049 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2629)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~ 1417 (2629)
.++..+. +++...+..+...+..+..... ...+...++++.+.+++....++..|..|..++..++.+-...-.-+
T Consensus 70 ~~~~~~~-S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALY-SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3344443 3345556667777766664322 22222347888999999766579999999999999998655422223
Q ss_pred HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhhccCCh-hhhHHHHHHHHHHHhhC-c
Q 000049 1418 VI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCA-P 1490 (2629)
Q Consensus 1418 v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~w-~~r~~a~~~L~~la~~~-p 1490 (2629)
+. ..+|.+..++..++..||+.|..|++.++..-+.. .+ ..++++|+..+..... ...+.+.++|..++.+. |
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 32 57899999999999999999999999998755443 22 4677888888776553 67888999999999864 4
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCC
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~ 1570 (2629)
.---.....++|.|..++.+.+++|..-||+|+..+...- ++.++ .++
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq----------------------~vi--------- 276 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQ----------------------MVI--------- 276 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHH----------------------HHH---------
Confidence 4434456788999999999999999999999999997532 12111 111
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc-cchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q 000049 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM-IPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l-~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~ 1648 (2629)
-..++|.+...|...+..++..|..++||+... +.... .-.-...+|.+..++. .+...+|+.|+..++.+..
T Consensus 277 ---~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG--~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 277 ---DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG--SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred ---HccchHHHHHHHcCCCcccccHHHhhccceeec--cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 123566666777777777777788888886653 21110 0112346788888887 6667799999999999987
Q ss_pred hhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHHHHH
Q 000049 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTL 1719 (2629)
Q Consensus 1649 ~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a~~~ 1719 (2629)
.-.+. .-..++|.|+..+.+.+ ...|..++.+++.+..+...+.. ..+++.+...+.-.+..+-..++.+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 33322 12478999999998765 56889999999988776555432 3456677766655565555555555
Q ss_pred HHHhhh
Q 000049 1720 FKYLPR 1725 (2629)
Q Consensus 1720 l~~L~~ 1725 (2629)
+..+-.
T Consensus 431 l~nil~ 436 (514)
T KOG0166|consen 431 LENILK 436 (514)
T ss_pred HHHHHH
Confidence 555544
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-06 Score=104.13 Aligned_cols=654 Identities=17% Similarity=0.187 Sum_probs=329.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHH------HHHHHhhcCCC---
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA------AEDIWDRYGYD--- 1127 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------a~~~w~~~~~~--- 1127 (2629)
+.+...|..+++||+++|..+|++|++.... +++ .+.++..+-....|.....++. .++.|......
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y--~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNY--PLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccC--CCc--hHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 4678889999999999999999999886532 222 2445555444444433332222 23568754422
Q ss_pred CC----CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH--
Q 000049 1128 FG----TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL-- 1199 (2629)
Q Consensus 1128 ~~----~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~-- 1199 (2629)
+. +.+ ..++...-+....++....+++.-+.+ .+|+.|++++..|...+. . ....+-.|+..
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls----~------~D~~~~~gVL~ta 150 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLS----S------GDFNVINGVLVTA 150 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcc----c------cchHHHHHHHHHH
Confidence 22 223 445566666778999999999988764 678888888888876532 0 11122233333
Q ss_pred --HHHHhhhhcCCCCh-hHH---HH-------HHHhhh--c---CCCcHHHHHHHHHHHHHHHHhh-----------Ccc
Q 000049 1200 --ALHSAADVLRTKDL-PVI---MT-------FLISRA--L---ADTNADVRGRMLNAGIMIIDKH-----------GRD 1250 (2629)
Q Consensus 1200 --~l~~l~~~~~~~~~-~~i---~~-------~li~~~--l---~d~~~~Vr~~~~~a~~~~i~~~-----------g~~ 1250 (2629)
.|+..-..+..+.+ .++ ++ -|+.+. + .+.+...-........-+.+.+ =.+
T Consensus 151 hsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEd 230 (960)
T KOG1992|consen 151 HSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFED 230 (960)
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHh
Confidence 33333222322221 111 11 111111 0 1112221111111111111111 124
Q ss_pred chhhhHHHHHHHhcccCC----C---hhhhhhHHHHHHHHHHHHHhhhccC-CCcchhhHHHHHhhcCCCcHHHHH--HH
Q 000049 1251 NVSLLFPIFENYLNKKAS----D---EEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQR--AV 1320 (2629)
Q Consensus 1251 ~~~~Ll~~~~~~l~~~~~----~---~~~~~~vr~~~v~~~~~La~~l~~~-~~~l~~i~~~L~~~L~~~~~~Vq~--~~ 1320 (2629)
+++..|+.|-+++....+ + ...-+.+|...++.+.--+..++.. ++.+...+......+.+-++..+. .+
T Consensus 231 nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 231 NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 566777777777753111 1 1123445555555555544444322 444555555455555443333322 22
Q ss_pred HHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh--C-------cchhhhhcHHHHHHHHhcCCC
Q 000049 1321 SSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF--G-------ISSLKKYGIAATLREGLADRN 1391 (2629)
Q Consensus 1321 ~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l--g-------~~~l~~~~i~~~L~~~l~~~~ 1391 (2629)
++++.-|....+. ..+..-...-..++.++... | ++.+-..+-++++..-++..+
T Consensus 311 s~Al~FLt~V~~r----------------~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsD 374 (960)
T KOG1992|consen 311 SKALQFLTSVSRR----------------PHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSD 374 (960)
T ss_pred HHHHHHHHHHHhh----------------hhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCC
Confidence 2222222111110 01110000111111222111 1 111112245667777776654
Q ss_pred CHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH-cCCCCHHHH--HHHHHHHHHHHHh----------------hc
Q 000049 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVR--EAAECAARAMMSQ----------------LS 1452 (2629)
Q Consensus 1392 ~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR--~aa~~al~~i~~~----------------l~ 1452 (2629)
-..+|.+|+..+..|++.+...+.+.+...+..++.. ..+|..+.+ +.+......++.. +.
T Consensus 375 vdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 375 VDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 3456668999899999887655666666666666653 345544333 3333322222221 11
Q ss_pred HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
+.....++|.|.+.-..+.+-.|.+++..+..+=...+ ..++-.++|.+...|......|-..|+.++..+-....+
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeecccCC---hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 22336677776653223333334444443322211111 233556788888899988899999999999987765443
Q ss_pred ------------hhHHhHHHHHHhccCCCCh----hHHHHHHHHHhccccccC----ChhhhhhHHHHHHHhhcCC-CHH
Q 000049 1533 ------------PEIASLVPTLLMGLTDPND----HTKYSLDILLQTTFVNTV----DAPSLALLVPIVHRGLRER-SAE 1591 (2629)
Q Consensus 1533 ------------~~i~~lvp~Ll~~l~d~~~----~~r~al~~L~~~~~~~~~----~~~~l~~i~p~L~~~L~d~-~~~ 1591 (2629)
|.+..++..|.+.++-|.. +.-+|+...+.. .... .+..+..+..++....+.+ ++.
T Consensus 532 ~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i--~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~ 609 (960)
T KOG1992|consen 532 SNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI--LQSAIIPHAPELLRQLTEIVEEVSKNPSNPQ 609 (960)
T ss_pred ccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh--CHHhhhhhhhHHHHHHHHHHHHHhcCCCCch
Confidence 2334455556666655543 222343333221 1111 1122222223333333333 455
Q ss_pred HHHHHHHHHHHHhhhcCC--CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccC
Q 000049 1592 TKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2629)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~ 1669 (2629)
--....+.++.+.....+ +..+..+-..++|.+...+.+...+.--.++..++.+++..+...-+.+.+ ++..+.++
T Consensus 610 fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~-l~~~lLsp 688 (960)
T KOG1992|consen 610 FNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSP-LFPPLLSP 688 (960)
T ss_pred hHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHhcCH
Confidence 566667777666554332 334566778899999999988777788888999999988766532222222 33333333
Q ss_pred CChHHHHHHHHHHHHHHH---hhChh------HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc-chHhhHHhHH
Q 000049 1670 NSNVERSGAAQGLSEVLA---ALGTV------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVL 1739 (2629)
Q Consensus 1670 ~~~~~R~~a~~~L~~i~~---~~g~~------~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~-~f~p~l~~ii 1739 (2629)
.- ..|.+-.-++-.+.. ..|.. .+..++..+.+.+.++ ..-..++.++..+...+.. ...||+..+.
T Consensus 689 ~l-W~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk--a~Dh~GF~LLn~i~~~~~~~~~~py~k~i~ 765 (960)
T KOG1992|consen 689 NL-WKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK--ANDHHGFYLLNTIIESIPPNELAPYMKQIF 765 (960)
T ss_pred HH-HhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc--ccchhHHHHHHHHHhcCCHhhhhHHHHHHH
Confidence 32 245442222222222 22332 2234444444444332 1223466677776666653 4678999999
Q ss_pred HHHHhhcCCC
Q 000049 1740 PAILDGLADE 1749 (2629)
Q Consensus 1740 ~~ll~~L~d~ 1749 (2629)
..+++.++..
T Consensus 766 ~llf~Rlqns 775 (960)
T KOG1992|consen 766 GLLFQRLQNS 775 (960)
T ss_pred HHHHHHHhcc
Confidence 9999988754
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-05 Score=100.56 Aligned_cols=518 Identities=20% Similarity=0.195 Sum_probs=296.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 000049 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPT 1969 (2629)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~ 1969 (2629)
|..+|.+.....+..|..-+-.++.+ |.+ ...++|.+.+...+.+.+++.-+..-|-.-.+.-....+ --+..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~-G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK-GKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHHH
Confidence 33445665555555554433333322 222 456777777777788999988776555543332211111 12566
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCC
Q 000049 1970 IRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049 (2629)
Q Consensus 1970 l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~ 2049 (2629)
+.+.|.|+++.+|..|.+.+..+-- .-+.|
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRv-------p~IaP------------------------------------------- 142 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRV-------PMIAP------------------------------------------- 142 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcch-------hhHHH-------------------------------------------
Confidence 7889999999999988877765421 11111
Q ss_pred chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHH
Q 000049 2050 SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIR 2129 (2629)
Q Consensus 2050 ~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR 2129 (2629)
-++-++-+...|..+.||..+..|+-++- +.+.+.-..+...+-..+.|.++.|-
T Consensus 143 ------------------------I~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~e~k~qL~e~I~~LLaD~splVv 197 (968)
T KOG1060|consen 143 ------------------------IMLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDPEQKDQLEEVIKKLLADRSPLVV 197 (968)
T ss_pred ------------------------HHHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCChhhHHHHHHHHHHHhcCCCCcch
Confidence 11122233446777888888888887763 33555555777777778889999999
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhh
Q 000049 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2629)
Q Consensus 2130 ~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 2209 (2629)
-+|+.++..+|-..- +.+..-.+.++.++-|-++=-+.-....|.+.++..-.+- ..+. ..+. +....
T Consensus 198 gsAv~AF~evCPerl----dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P--~~~~---~~~e---~n~~~ 265 (968)
T KOG1060|consen 198 GSAVMAFEEVCPERL----DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP--TVVD---SSLE---DNGRS 265 (968)
T ss_pred hHHHHHHHHhchhHH----HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc--cccc---cccc---cCccc
Confidence 999998888875321 2222334556666655444333334455555544321110 0000 0000 00000
Q ss_pred hhcCCcccccCCCCcccchhhHHHHHHH----HhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCC
Q 000049 2210 KKKGGPILIPGFCLPKALQPLLPIFLQG----LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285 (2629)
Q Consensus 2210 ~~~~~~~~l~g~~l~k~l~~ilp~ll~~----L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~ 2285 (2629)
........+...|-...+-+..|++. |.+.++.+-.+++.+.--++-. .-+..|..+|+|.+.+ +
T Consensus 266 --~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-------~~~~~i~kaLvrLLrs--~ 334 (968)
T KOG1060|consen 266 --CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-------NQVTKIAKALVRLLRS--N 334 (968)
T ss_pred --ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-------HHHHHHHHHHHHHHhc--C
Confidence 00000011111221223333444433 3345666666666665554421 1345678899999875 6
Q ss_pred HhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHH
Q 000049 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGI 2365 (2629)
Q Consensus 2286 ~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~v 2365 (2629)
.+++...|..+..+..+-+..|.||+..+ .-+-.|+ ..++.-=...|..|+. ..++..++.++..-++++|..+
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsF----fv~ssDp-~~vk~lKleiLs~La~-esni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFEPHLKSF----FVRSSDP-TQVKILKLEILSNLAN-ESNISEILRELQTYIKSSDRSF 408 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhhhhhhce----EeecCCH-HHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhcCchhH
Confidence 88999999999999998888887775421 1111222 3344444555555543 4678899999999999988878
Q ss_pred HHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCc-h
Q 000049 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW-A 2444 (2629)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~-~ 2444 (2629)
-..+.+|++.+....+. ..+.+++-|..++.+.++.|-..+...|..|.+..|.++. .++.++...+.+-.. .
T Consensus 409 aa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-~ii~~La~lldti~vp~ 482 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-EILFQLARLLDTILVPA 482 (968)
T ss_pred HHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-HHHHHHHHHhhhhhhhh
Confidence 88888999888765443 4577888888888888999999999999999998887542 233333221111110 0
Q ss_pred hhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhh
Q 000049 2445 ARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA 2524 (2629)
Q Consensus 2445 ~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~ 2524 (2629)
.|. ..++- +..+-+. .+....++...+.+...++++.++-....-..++....... .+.+...+-.+..
T Consensus 483 ARA---~IiWL-ige~~e~--vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~Yv~~L~~- 551 (968)
T KOG1060|consen 483 ARA---GIIWL-IGEYCEI--VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQYVFELAR- 551 (968)
T ss_pred hhc---eeeee-ehhhhhh--cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHHHHHHHhc-
Confidence 111 11111 1111111 13345678888888888888888888877777766553211 1222222222222
Q ss_pred cCCCCHHHHHHH
Q 000049 2525 LHDDSSEVRRRA 2536 (2629)
Q Consensus 2525 l~~~~~~vr~~a 2536 (2629)
.|.+.|+|.-+
T Consensus 552 -yD~sYDiRDRa 562 (968)
T KOG1060|consen 552 -YDLSYDIRDRA 562 (968)
T ss_pred -cCCCcchhHHH
Confidence 37777776654
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-05 Score=106.94 Aligned_cols=301 Identities=16% Similarity=0.163 Sum_probs=196.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHH
Q 000049 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVP 1502 (2629)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp 1502 (2629)
++.++.+.+...-+.++.+++.++....+.. ...+.+.+..+|.+++..+|..++..++.++.......... =.++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 7777877766666788899999999887776 57888999999999999999999999999887644322211 267899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHH
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2629)
.+..++.|++..|.+.|.++|..+++.- +.++.+++. ...+.|.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~----------------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDS----------------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCc----------------------------------chHHHHH
Confidence 9999999999999999999999998642 222222100 0123333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-CCCCc--hh
Q 000049 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENF--PD 1657 (2629)
Q Consensus 1583 ~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~-g~~~~--~~ 1657 (2629)
..+...+..+|..+.+++..++.. . .+...+.. .+++.+...+.+.+.-+|..+...++.++..- |-+++ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 344444556777777777777653 1 12333333 37888888888999999999999999999821 11122 35
Q ss_pred hHHHHHHHhccCCChHHHH------HHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhc
Q 000049 1658 LVSWLLDALKSDNSNVERS------GAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2629)
Q Consensus 1658 ll~~Ll~~L~~~~~~~~R~------~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g 1728 (2629)
+++.+...+.+..... |. +.....+.+...-+.. .++.++..+.+...+.++..+..|+.+++.++....
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6777777775543332 22 2222334444331122 235566666677778899999999999999986542
Q ss_pred c-ch-----HhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000049 1729 V-QF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2629)
Q Consensus 1729 ~-~f-----~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv 1765 (2629)
+ .+ .+-+..++..+.........++|..++.++..++
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 2 11 1223334444444444444556666666655554
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00064 Score=87.77 Aligned_cols=668 Identities=15% Similarity=0.212 Sum_probs=313.8
Q ss_pred CCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH----HHHHHHhccccc------cCChhhhhhHHHH
Q 000049 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVN------TVDAPSLALLVPI 1580 (2629)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~----al~~L~~~~~~~------~~~~~~l~~i~p~ 1580 (2629)
++|.||+.|-++|.+.... ..+.-.++..+-+.-.|+ .+|- +++..++..... .+.+..-..+-..
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~--~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~iksl 92 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDP--QIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSL 92 (960)
T ss_pred CCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcCh--hHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHH
Confidence 4678888888888877643 122233333332222222 3331 122222211111 1222233344455
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-----c
Q 000049 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----F 1655 (2629)
Q Consensus 1581 L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-----~ 1655 (2629)
+...+-+....++....++++-++.. |+-.-+|.++|-+...++..+..+-......-.++.+....++ |
T Consensus 93 Iv~lMl~s~~~iQ~qlseal~~Ig~~-----DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~ 167 (960)
T KOG1992|consen 93 IVTLMLSSPFNIQKQLSEALSLIGKR-----DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALW 167 (960)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 55555555677888888888877652 4555688999999999987666665555555555666554331 1
Q ss_pred hh--------------hHHHHHHHhccCCChHHHH----HHHHHHHHHHHhhC----hhHH----HhHhHHHHHhhcCC-
Q 000049 1656 PD--------------LVSWLLDALKSDNSNVERS----GAAQGLSEVLAALG----TVYF----EHILPDIIRNCSHQ- 1708 (2629)
Q Consensus 1656 ~~--------------ll~~Ll~~L~~~~~~~~R~----~a~~~L~~i~~~~g----~~~l----~~llp~l~~~l~~~- 1708 (2629)
.+ ++...++..+.......-. +...-+..+.-.+. ++++ +..|+.+.+.+...
T Consensus 168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~ 247 (960)
T KOG1992|consen 168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDN 247 (960)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccC
Confidence 11 1111112222111111100 11111112211221 2233 45667776665522
Q ss_pred ------------ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChh-----HHHHHHHHHHHHHHH--hh
Q 000049 1709 ------------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES-----VRDAALGAGHVLVEH--YA 1769 (2629)
Q Consensus 1709 ------------~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~-----VR~~al~al~~iv~~--~~ 1769 (2629)
-..+|...+..+.-.+....+.|.||+++++...+..+..-..+ ....|+..+..+++. |.
T Consensus 248 p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~ 327 (960)
T KOG1992|consen 248 PLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYA 327 (960)
T ss_pred cccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 23567788888888888889999999999998888887654333 334455555554432 11
Q ss_pred hc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCC--cccHHHHHHHHHHHhchhhHHHHH
Q 000049 1770 TT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE--GASTEAHGRAIIEVLGRDKRNEVL 1846 (2629)
Q Consensus 1770 ~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede--~~~~~~~~~~l~~~Lg~e~~~~vl 1846 (2629)
.- .-+.++..+.+.. .++.+. .. ++|+| +++..++ +...+
T Consensus 328 ~~F~~~~vl~~i~e~V-------------vlpN~~-----------lR-~eDeElFED~pleY---iRRDl--------- 370 (960)
T KOG1992|consen 328 ELFEGENVLAQICEKV-------------VLPNLI-----------LR-EEDEELFEDNPLEY---IRRDL--------- 370 (960)
T ss_pred hhhcchHHHHHHHHhh-------------cccccc-----------cc-hhhHHHhccCHHHH---HHHhc---------
Confidence 00 0001111111111 011110 00 01100 0001111 00100
Q ss_pred HHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccchhhh
Q 000049 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERVLPS 1923 (2629)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1923 (2629)
. -+|.+ .-|++|++.++.++.++......++..-++.++.... +.+|..+..+...+..+.-+.+.
T Consensus 371 E-----GsDvd-TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t----- 439 (960)
T KOG1992|consen 371 E-----GSDVD-TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQT----- 439 (960)
T ss_pred c-----cCCcc-hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcch-----
Confidence 0 13332 3578999999999998876666666665555554333 34566665565555544433211
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l-~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
.+.|+.. ..++ -.+.+|. ..++|.+...=....|-++..|.+-.-..-...|+...-
T Consensus 440 ---------------~~~Gvts-tn~l------vdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm 497 (960)
T KOG1992|consen 440 ---------------AKHGVTS-TNEL------VDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM 497 (960)
T ss_pred ---------------hhcceee-cccc------ccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH
Confidence 0111000 0000 0111222 334444443222445666666666555555566666666
Q ss_pred hhHHHHHHhccCcCch--hHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC-CChhhhHhhhHHHH
Q 000049 2003 EIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG-PGLNFHLGTILPAL 2079 (2629)
Q Consensus 2003 ~ilp~Ll~~L~~~~~~--~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g-~~l~~~l~~il~~L 2079 (2629)
.++|.++..|+.+..- .+|..++..++..+... ++ ..+| ..+.||+..++..|
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~-----------------~~-------~if~~~~iap~~~~ll~nL 553 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS-----------------NA-------KIFGAEDIAPFVEILLTNL 553 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCc-----------------cc-------cccchhhcchHHHHHHHHH
Confidence 7788888888765422 23333444443322110 00 0112 34566677777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhc----CC-CChhHHHHHHHHHHHHHHhch----hhh
Q 000049 2080 LSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGV----GD-NQASIRRSSAYLIGYFYKNSK----LYL 2147 (2629)
Q Consensus 2080 l~~L~~~~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l----~d-~~~~vR~~a~~~L~~l~~~~~----~~~ 2147 (2629)
++.+..+....-+..++++..++...++ ++...++..|.+.+ ++ .+|.--..-.+.+|.++..++ ..+
T Consensus 554 f~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v 633 (960)
T KOG1992|consen 554 FKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV 633 (960)
T ss_pred HHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH
Confidence 7666543333333344444444432211 22233333332222 22 223333344444555444332 122
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCc----ccc-----
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP----ILI----- 2218 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~----~~l----- 2218 (2629)
+..-..+++.+...+..+-.+....+...++.++.......-+.+.+ +...+.+.+ ..++.|.. ..+
T Consensus 634 s~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~-l~~~lLsp~---lW~r~gNipalvrLl~aflk 709 (960)
T KOG1992|consen 634 SSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSP-LFPPLLSPN---LWKRSGNIPALVRLLQAFLK 709 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHhcCHH---HHhhcCCcHHHHHHHHHHHh
Confidence 33333333333333433333444455555665555443311111111 111111100 00001100 000
Q ss_pred cCCC-C--cccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHh
Q 000049 2219 PGFC-L--PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 2287 (2629)
Q Consensus 2219 ~g~~-l--~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~ 2287 (2629)
.|.+ . .+.+.+++.+|...+.+...+ ..+...+..++...++..+.||+.+|.+-|.+-++..-...
T Consensus 710 ~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~k 779 (960)
T KOG1992|consen 710 TGSQIVEAADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEK 779 (960)
T ss_pred cCchhhcccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHH
Confidence 0000 0 133566777776666554333 46788899999999988899999999999998887653333
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.0002 Score=95.73 Aligned_cols=177 Identities=16% Similarity=0.079 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHh-HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcC
Q 000049 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 2323 (2629)
Q Consensus 2245 ~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~-vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~ 2323 (2629)
.|+.|-.+|..+++..| ..+...++.+...|...+.+..+.+ .-...++.+..+...++..++| +-++.+.+..++.
T Consensus 749 errgael~L~~l~~~fg-~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFG-GSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhh-HHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 47778888999999988 5555555666555665555432222 4445566666666667777777 5567778888999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc--CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhc
Q 000049 2324 DSTRTVRSSAALALGKLSALS--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2629)
Q Consensus 2324 d~~~~vR~~Aa~aLg~l~~~~--~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2629)
..+..+|.+|+.|+|.+.... ......+..++..+.+.+.-+|.....-+.+++...+.....+|..-++.+|...+.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 999999999999999995432 223455566666666655445544444444555444444447899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC
Q 000049 2402 HDDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+..+.+|.++.+++..+....|
T Consensus 907 d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999987765
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-07 Score=110.81 Aligned_cols=200 Identities=25% Similarity=0.340 Sum_probs=139.9
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccC
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D 1855 (2629)
+.+.++....+.+|..|..+++-+..++..-. ..+ ..+.+.+.+ ..++..+.....|
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~-------------~~~-----~~~~~~~~l-----~~~~~~i~~~l~d 64 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNA-------------PED-----FPPDFVECL-----RQLLDAIIKQLSD 64 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----------------------HHHHHHH-----H---HHHHH-S-H
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCC-------------ccc-----cHHHHHHHH-----HHhHHHHHHHHhh
Confidence 33444444577899999999999988875310 000 001122221 2344556666788
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhH-HHHHhhhcCC
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLKD 1934 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~l-lp~L~~~L~d 1934 (2629)
....|-..|+.+++.++...+..+.++++.++|.+++.+.+++..+|..|..+|..++..++ +.+.+ .+.+..+..+
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~ 142 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKS 142 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhC
Confidence 88889999999999999999999999999999999999999999999999999999998876 22444 6777888899
Q ss_pred CChhHHHHHHHHHHHHHHhhc--hhhHHH--hHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000049 1935 PSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2629)
Q Consensus 1935 ~~~~vR~~a~~aL~~li~~~~--~~~l~~--~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2629)
+++.+|..++..+..++...+ ...+.. .++.+.+.+.+.+.|++++||+.|..+|..++..+|..+
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 999999999999999988877 333332 358899999999999999999999999999998888753
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=110.78 Aligned_cols=183 Identities=26% Similarity=0.327 Sum_probs=131.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHH-------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH
Q 000049 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA-------ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2629)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~-------~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~ 1419 (2629)
.++.+|..|..|...|..++.+...... ...++ ..+...+.+. ....-..|+.++..++..++..|.||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 3556899999999999999987621111 11222 3344444443 3445567899999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc---hhhhh-
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ- 1495 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~~- 1495 (2629)
.++|.++..++|++..+|++|..++..++...+ ..-+.+++.+..++.+++|.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999999999998776 1112337777788999999999999999999888766 34433
Q ss_pred -hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1496 -CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1496 -~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
.++.+++.+..++.|++++||++|-.++..+.+.+++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999877663
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00037 Score=88.43 Aligned_cols=252 Identities=13% Similarity=0.173 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc
Q 000049 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2629)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L 1497 (2629)
...+-+-++..++...+.||..|...+-.++-..+ +.++..+|.+.+.|++++..+..+|+..+..+|...|+..
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny---- 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY---- 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc----
Confidence 34677888899999999999999888877766553 4678899999999999999999999999999999888754
Q ss_pred cchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcC-chhH-HhHHHHHHhccCCCChhH--HHHHHHHHhcccccc--CC
Q 000049 1498 PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDHT--KYSLDILLQTTFVNT--VD 1570 (2629)
Q Consensus 1498 ~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~-~~~i-~~lvp~Ll~~l~d~~~~~--r~al~~L~~~~~~~~--~~ 1570 (2629)
-.+-|.+++++.++ +..|- ++-|.-|+...+ .|.+ ..++|.+.+.+.+..... =+|+.++++...... ..
T Consensus 217 L~LAP~ffkllttSsNNWmL---IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 217 LQLAPLFYKLLVTSSNNWVL---IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred ccccHHHHHHHhccCCCeeh---HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 24567777777653 33332 333344443222 3544 678888888776543321 167777765432222 33
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
..+....+..|.-.+.|.+++.|.-++-+++.++. +.|+.+..+. ..+..+|.|.++.+|-.|...+-.++.
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-- 365 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-- 365 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh--
Confidence 45666777788888899999999999999999987 3555554444 455678899999999999988876654
Q ss_pred CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000049 1651 GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2629)
Q Consensus 1651 g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~ 1686 (2629)
++.+.+++..|+..+...+...-|......+-++|
T Consensus 366 -kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 366 -KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred -hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 45677888888877765544334444433333333
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-05 Score=99.46 Aligned_cols=390 Identities=17% Similarity=0.213 Sum_probs=230.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHH
Q 000049 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2629)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~i 2154 (2629)
+.+.+-+-|+..+.-+...|..+++.++ +.+..+.+.|++.+.+++.++.+|.-|+.|...+....+.-.+ .+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----Hh
Confidence 4455555666777767667777776653 4567788888888888888999999999988888877654433 34
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc------ccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccch
Q 000049 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2629)
Q Consensus 2155 l~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~------~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~ 2228 (2629)
+.....++.+.+..|.-+...-+..+++..+. +..+.++..+++.....- .....+.|.+ .
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y--------speydv~gi~-----d 247 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY--------SPEYDVHGIS-----D 247 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCccCccCCC-----c
Confidence 45556667778888877777777777765432 233444444444332210 0001233332 3
Q ss_pred hhHHH----HHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHHhc
Q 000049 2229 PLLPI----FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKG 2303 (2629)
Q Consensus 2229 ~ilp~----ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~~ 2303 (2629)
|++.+ ++.-|..++++....-...|+.++..+... +..=..|.-..++.+-+ +.+...|..+..+|+.++..-
T Consensus 248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS--KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR 325 (866)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence 44443 234455666666666677778877665421 11111222222222211 234556666666666555432
Q ss_pred CCCcc---------------CchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHH
Q 000049 2304 GIALK---------------PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368 (2629)
Q Consensus 2304 ~~~l~---------------p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~ 2368 (2629)
+..++ .-+.+-..+++.||.|++..+|.+|...+-.|+. ..++..++.+|+.-+...|++.+..
T Consensus 326 d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 22111 1224456789999999999999999988777654 4678899999999987777777765
Q ss_pred HHHHHHHH------------------HhhcCCCcChHHHHHHHHHHHHhhcC---------------------CCHHHHH
Q 000049 2369 ILTALKGV------------------LKHAGKSVSSAVKIRVYSVLKDLVYH---------------------DDDHVRV 2409 (2629)
Q Consensus 2369 ~l~AL~~v------------------i~~~g~~~~~~~~~~i~~~L~~~l~~---------------------~~~~vr~ 2409 (2629)
...-+.++ +..+|.-+.......++.++.+.+.+ +++....
T Consensus 405 ~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~q 484 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQ 484 (866)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 55555544 44445544444455555555443221 2344556
Q ss_pred HHHHHHHHHHhcC------------ChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHH
Q 000049 2410 SAASILGIMSQCM------------EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477 (2629)
Q Consensus 2410 ~aa~~Lg~L~~~~------------~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l 2477 (2629)
.+..|||.-+..+ .++++...+.+++....+. ...+..++.++..+....+.. .+++-..+
T Consensus 485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~------~~ri~~lI 557 (866)
T KOG1062|consen 485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS------SERIKQLI 557 (866)
T ss_pred HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc------HHHHHHHH
Confidence 7888999877221 2235556666665543333 444444444444444333322 45677777
Q ss_pred HhhhcCCChhHHHhHHH
Q 000049 2478 KSSLKDEKFPLREASTK 2494 (2629)
Q Consensus 2478 ~~~~~~~~~~ir~~a~~ 2494 (2629)
.+...+-+..+++.|++
T Consensus 558 ~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 558 SSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHhcccccHHHHHHHHH
Confidence 77777778888777765
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00069 Score=90.86 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=105.4
Q ss_pred HHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChh-HHHHHH
Q 000049 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS-IRRSSA 2133 (2629)
Q Consensus 2055 ~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~-vR~~a~ 2133 (2629)
..+.+++-.+|..+.+ +-+.+|.++......+..+|..+..|++.+......+....+++.++..+++.+.- .|+.+.
T Consensus 798 ~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~ 876 (1549)
T KOG0392|consen 798 EVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGAD 876 (1549)
T ss_pred HHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHH
Confidence 3445555556777777 77788999999999999999999999998877655566677777777778765554 455666
Q ss_pred HHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000049 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2629)
Q Consensus 2134 ~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2629)
..++.++......+.+|.+-++..|+..++|..+.||.++-.++..++...+-
T Consensus 877 e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 877 ELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred HHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 67777777777788899999999999999999999999999999999887653
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-07 Score=104.13 Aligned_cols=267 Identities=17% Similarity=0.167 Sum_probs=185.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~ 1415 (2629)
.+|.+.+.|-+....-....|+++|..+++|... +.+...+.+|.+.+++.+. +..+|+.++.++|.++.- .....
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGD-S~~~R 192 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGD-SEGCR 192 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCC-chhHH
Confidence 4566666664433335567899999999987543 2222336678888888776 688999999999998732 22355
Q ss_pred hHHHH--HHHHHHHHcCCCC---HHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHh
Q 000049 1416 PYVIQ--MLPLLLVAFSDQV---VAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1416 ~~v~~--ilp~ll~~l~D~~---~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2629)
+|+-+ .+..++..+.... ..+|.++|.....+-..-++. .+.+.+|.|.+.+...+..+-..||+++..+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 66653 5666666655443 467888876655554433332 357889999999888888999999999999887
Q ss_pred hCchhhhhhcc-chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhH--HhHHHHHHhccCCCChhHH-HHHHHHH
Q 000049 1488 CAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2629)
Q Consensus 1488 ~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2629)
+..+.+...+. .+.+.|+++|.+++..|+.-|.+++|+++..-.. ..+ -..++.+...+++|.+.+| +++.++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 65554444333 5677899999999999999999999988754221 111 3456777777888888887 6776665
Q ss_pred hccc--cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1562 QTTF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1562 ~~~~--~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
..+. ...+..-.-..++|.|...+...+..+|+.||.++.+....
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4211 11122222346788888888888889999999999987654
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9e-07 Score=101.29 Aligned_cols=342 Identities=15% Similarity=0.137 Sum_probs=218.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-hcHH--hH--HhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQ--GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~-l~~~--~v--~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
-+|.+.+.+...+-.-.-.+..-.+.+.+. .++. .+ ..++|.+++.+++. .--.+..|.++|..++.+...+..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 346666555444333333333333433331 1111 11 45788888888543 334566889999999987666543
Q ss_pred hhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhH--HhHHHHHHhccCCCCh---hHHHHHHHHHhcccc
Q 000049 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPND---HTKYSLDILLQTTFV 1566 (2629)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~---~~r~al~~L~~~~~~ 1566 (2629)
-.. ..-+|.+.++|.+++..||+.+++|||+++..-.. .++ ...+..++..+..... .+|.+-.+|... .-
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl-cR 230 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL-CR 230 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh-hC
Confidence 222 35689999999999999999999999999854221 111 1233334444332222 245555555431 01
Q ss_pred cc---CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1567 NT---VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 1642 (2629)
Q Consensus 1567 ~~---~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2629)
+. -+-......+|+|.+.+...++++-..||.+++-+..... +.+...+ ..+++.|.++|.+++..++.-|.+.
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~--E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN--EKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH--HHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 11 1224556789999999999999999999999998876321 2222222 2467789999999999999999999
Q ss_pred HHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-HhHhHHHHHhhcCCChhhHH
Q 000049 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 1714 (2629)
Q Consensus 1643 L~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~ 1714 (2629)
+|.++..-... .-...++.+...|.+.. ...|..+|..++.+-.+-... .. ..++|.++..+...+-.+|.
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChh-hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99998754432 11244555544455443 468999999999886654333 11 46889999999988999999
Q ss_pred HHHHHHHHhhhhhc--cchHhhHH--hHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1715 GYLTLFKYLPRSLG--VQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2629)
Q Consensus 1715 ~a~~~l~~L~~~~g--~~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~iv~ 1766 (2629)
.++.++.......- ++...|+- .++.++..+|.-.+..+-+.+++++..+++
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 99998887654321 24445543 367777777765555566666777766654
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0003 Score=89.98 Aligned_cols=469 Identities=16% Similarity=0.167 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCCh
Q 000049 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~ 1937 (2629)
...+++--.+++-++.+ +.. ..++|.+++...+.+.++|....--|-+.++.-+.-.+ --+..+++.|.|+++
T Consensus 50 ~~KleAmKRIia~iA~G--~dv----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKG--KDV----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSINTFQKALKDPNQ 122 (968)
T ss_pred HHHHHHHHHHHHHHhcC--CcH----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHHHHHhhhcCCcH
Confidence 34445444455544443 333 44555667777888988887766555444443222211 124678899999999
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc
Q 000049 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT 2017 (2629)
Q Consensus 1938 ~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~ 2017 (2629)
-+|..+...|+.+- +.-..+-++-.+.++..|+.+.||..|+.|+-+++. .++...++++..
T Consensus 123 LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~---------- 184 (968)
T KOG1060|consen 123 LIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEV---------- 184 (968)
T ss_pred HHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHH----------
Confidence 99988888777541 111224445566778899999999999999999875 333222232222
Q ss_pred hhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000049 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2629)
Q Consensus 2018 ~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~a 2097 (2629)
++.++..++..+ ...|+-+.-+++.+.+. .+..=...+-+.+.+-++--+..++..
T Consensus 185 -------I~~LLaD~splV----------------vgsAv~AF~evCPerld-LIHknyrklC~ll~dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 185 -------IKKLLADRSPLV----------------VGSAVMAFEEVCPERLD-LIHKNYRKLCRLLPDVDEWGQVVLINM 240 (968)
T ss_pred -------HHHHhcCCCCcc----------------hhHHHHHHHHhchhHHH-HhhHHHHHHHhhccchhhhhHHHHHHH
Confidence 222222111111 11222222222222110 111112222222222111111111222
Q ss_pred HHHHHhhc-ccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH-HHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q 000049 2098 AETVTLVI-DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF-YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2629)
Q Consensus 2098 l~~l~~~~-~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l-~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~ 2175 (2629)
+-..++.. .++. .+... + .++. .++..-... ....+....+-..-+++..-.++...++.|.-++..
T Consensus 241 L~RYAR~~l~~P~---~~~~~---~-e~n~----~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aq 309 (968)
T KOG1060|consen 241 LTRYARHQLPDPT---VVDSS---L-EDNG----RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQ 309 (968)
T ss_pred HHHHHHhcCCCcc---ccccc---c-ccCc----ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHh
Confidence 11111110 0000 00000 0 0000 000000000 000111112223445555556666777777776666
Q ss_pred HHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000049 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGE 2255 (2629)
Q Consensus 2176 aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~ 2255 (2629)
++..+.... .. ..|...++. +..++.+++...+.+|+.
T Consensus 310 l~y~lAP~~---~~--------------------------------------~~i~kaLvr-LLrs~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 310 LFYHLAPKN---QV--------------------------------------TKIAKALVR-LLRSNREVQYVVLQNIAT 347 (968)
T ss_pred HHHhhCCHH---HH--------------------------------------HHHHHHHHH-HHhcCCcchhhhHHHHHH
Confidence 655553221 11 112223333 334566778888999999
Q ss_pred HHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHH
Q 000049 2256 LIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAAL 2335 (2629)
Q Consensus 2256 l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~ 2335 (2629)
++...+ .-|.||+..+. + ....+..+|..=++.|..|+... -++++.+-|.....+++..+-..|.+
T Consensus 348 ~s~~~~-~lF~P~lKsFf---v---~ssDp~~vk~lKleiLs~La~es------ni~~ILrE~q~YI~s~d~~faa~aV~ 414 (968)
T KOG1060|consen 348 ISIKRP-TLFEPHLKSFF---V---RSSDPTQVKILKLEILSNLANES------NISEILRELQTYIKSSDRSFAAAAVK 414 (968)
T ss_pred HHhcch-hhhhhhhhceE---e---ecCCHHHHHHHHHHHHHHHhhhc------cHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 998876 78899977652 1 22235678888888888887742 36778888888888887789999999
Q ss_pred HHHHHHhc-cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC-CHHHHHHHHH
Q 000049 2336 ALGKLSAL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD-DDHVRVSAAS 2413 (2629)
Q Consensus 2336 aLg~l~~~-~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~ 2413 (2629)
++|+.+.. ...-+..+..|+..+.+.+..|-..+.-.++.+++.- +.-...|+.-|...++.- -+..|.....
T Consensus 415 AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~-----p~~h~~ii~~La~lldti~vp~ARA~IiW 489 (968)
T KOG1060|consen 415 AIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD-----PAEHLEILFQLARLLDTILVPAARAGIIW 489 (968)
T ss_pred HHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHHhhhhhhhhhhceeee
Confidence 99998553 3445778899999998888888888888888888753 233344555555554332 3445555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhH
Q 000049 2414 ILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 2447 (2629)
Q Consensus 2414 ~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 2447 (2629)
.+|..+...|- -+-.+++.+.....+....++.
T Consensus 490 Lige~~e~vpr-i~PDVLR~laksFs~E~~evKl 522 (968)
T KOG1060|consen 490 LIGEYCEIVPR-IAPDVLRKLAKSFSDEGDEVKL 522 (968)
T ss_pred eehhhhhhcch-hchHHHHHHHHhhccccchhhH
Confidence 77777766552 2223444444444444444443
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0089 Score=78.62 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=199.3
Q ss_pred hhhhHhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHhh--cccccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhc
Q 000049 2068 LNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNS 2143 (2629)
Q Consensus 2068 l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~al~~l~~~--~~~~~~~~ll~~Ll~~l-~d~~~~vR~~a~~~L~~l~~~~ 2143 (2629)
...++..++..+...+. ...|.+-..+.+++..+..+ +..+-+..++...+..+ .+..+.+|..|+.++..+| .
T Consensus 443 ~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~ 520 (1005)
T KOG2274|consen 443 NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--K 520 (1005)
T ss_pred hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--C
Confidence 44455555555555553 34455555777888777665 23344666666666655 4566789999999888888 3
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCC
Q 000049 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223 (2629)
Q Consensus 2144 ~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l 2223 (2629)
..-+.+..|.++..|..+..+...+|.....++|+.+++-.++.-.
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a---------------------------------- 566 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA---------------------------------- 566 (1005)
T ss_pred ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh----------------------------------
Confidence 3456778899999999999999999999889999888765443110
Q ss_pred cccchhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC---CCHhHHHHHHHHHHH
Q 000049 2224 PKALQPLLPIFLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSI 2298 (2629)
Q Consensus 2224 ~k~l~~ilp~ll~~L~--~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~---~~~~vk~~al~~L~~ 2298 (2629)
..-+.+.|.+..-+. +.+|.+-..+-.++-++++.. ....|+....++.++.+++.. -+......+++.|..
T Consensus 567 -s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLtt 643 (1005)
T KOG2274|consen 567 -SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA--ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTT 643 (1005)
T ss_pred -hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHH
Confidence 000112333332222 224445555666677776643 567777788888888888743 246678889999999
Q ss_pred HHHhcCCCccC-chHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhc----------cCChh-HHHHHHHHhhhcCC--H
Q 000049 2299 IIRKGGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL----------STRVD-PLVGDLLSSLQVSD--A 2363 (2629)
Q Consensus 2299 L~~~~~~~l~p-~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~----------~~~~~-~ll~~Ll~~l~~~d--~ 2363 (2629)
+++..+..+.. ++.+..+.+.++.-++ +..+=..+..||..++.. .|+.. .++-..+..+-+++ .
T Consensus 644 vvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sd 723 (1005)
T KOG2274|consen 644 VLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSD 723 (1005)
T ss_pred HHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccch
Confidence 99988776543 4456788888886555 566677888999988543 12222 35555555654432 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhcCC
Q 000049 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH-DDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
.....+-.-+..++.++|..+ .+..++|+..+..-+.. ....+-..-...+..|....+
T Consensus 724 s~a~~VG~lV~tLit~a~~el-~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~ 783 (1005)
T KOG2274|consen 724 SAAAFVGPLVLTLITHASSEL-GPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDL 783 (1005)
T ss_pred hHHHHHhHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCH
Confidence 223334445556777888777 44555555544444333 345555555566666665444
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.018 Score=86.03 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=89.6
Q ss_pred HHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhccch
Q 000049 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS----SSSERRQVAGRALGELVRKLGERV 1920 (2629)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~----~~~~~R~~A~~~L~~lv~~~~~~~ 1920 (2629)
.+..++..+.|....++.++...++.++...|..+-+.+. ...+..++. ....+......-+..++.....-+
T Consensus 566 ~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr---~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 566 LLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR---KTLLELLTELEFSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred hHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH---HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 4445667788999999999999999988877754444443 333333332 222223333333333333222222
Q ss_pred hhhHH---HHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHh
Q 000049 1921 LPSII---PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSA 1996 (2629)
Q Consensus 1921 l~~ll---p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~~ 1996 (2629)
.+++- -.+...+.+++..+-..+...+++++...| ..+..+.+.+++.+.+.+.|. ...-|.++.++++.+...-
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 33332 333334556666666677788888766544 445556667777777777765 4456777788888887766
Q ss_pred Ch
Q 000049 1997 GM 1998 (2629)
Q Consensus 1997 g~ 1998 (2629)
|.
T Consensus 722 ~~ 723 (2341)
T KOG0891|consen 722 GY 723 (2341)
T ss_pred ce
Confidence 54
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.4e-06 Score=94.94 Aligned_cols=364 Identities=18% Similarity=0.129 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-H--hhHHHHHhhhccC
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-K--LVLPSLLKGLEDK 1470 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~--~ilp~Ll~~L~~~ 1470 (2629)
.+| .+..+|..+.+.-- ...-.+....++..+...++.+.-++..+++.++-.....++ . .=+..++..+..+
T Consensus 63 lqr-saalafAeitek~v---r~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd 138 (550)
T KOG4224|consen 63 LQR-SAALAFAEITEKGV---RRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD 138 (550)
T ss_pred cch-HHHHHHHHHHHHHH---HHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC
Confidence 344 45556666554221 122234555666677778888999999888877655444432 1 1123344444445
Q ss_pred ChhhhHHHHHHHHHHHhhCchh-hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH---HhHHHHHHhcc
Q 000049 1471 AWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGL 1546 (2629)
Q Consensus 1471 ~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i---~~lvp~Ll~~l 1546 (2629)
.-.++..++.++..++...... -..+...+.| +..+-+..+.+||..+..+|-++.....+... ..-+|.|...+
T Consensus 139 ~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p-ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll 217 (550)
T KOG4224|consen 139 GVEVQCNAVGCITNLATFDSNKVKIARSGALEP-LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL 217 (550)
T ss_pred CcEEEeeehhhhhhhhccccchhhhhhccchhh-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh
Confidence 5556666777777776542222 1222333433 55666778899999999999999876655432 56678888888
Q ss_pred CCCChhHH-HHHHHHHhc---cccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHH
Q 000049 1547 TDPNDHTK-YSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622 (2629)
Q Consensus 1547 ~d~~~~~r-~al~~L~~~---~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~ 1622 (2629)
...+..++ +|..++... .-...+-...-+.++|.+...+.+.+++++-.|.-++++++.- ......-.-..-+|
T Consensus 218 ~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP 295 (550)
T KOG4224|consen 218 KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLP 295 (550)
T ss_pred ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCch
Confidence 77776676 454444321 0011112233456899999999999999999999999998863 21111111223567
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-H
Q 000049 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-E 1695 (2629)
Q Consensus 1623 ~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~ 1695 (2629)
.+.++++++.-..-.....||..+.-.-+.+. -..++..|...|.-.++......+...+-.++...... .. .
T Consensus 296 ~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es 375 (550)
T KOG4224|consen 296 LLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES 375 (550)
T ss_pred HHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc
Confidence 88888888866666667777876655433331 13455566666665554545666666666665533222 11 3
Q ss_pred hHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHH--hHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2629)
Q Consensus 1696 ~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~iv~ 1766 (2629)
.-+|.+...+.+..-.+|+....++..++-. +.+..++- .++|.+.....++.++||..+..|+..+..
T Consensus 376 gAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 376 GAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred CchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 4578888888888888888888788777643 33334433 488999999999999999999888877654
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00018 Score=92.71 Aligned_cols=307 Identities=16% Similarity=0.180 Sum_probs=194.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchH
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv 1501 (2629)
...+-+-+..++..|.-.|..+++.+ .+++-...+.|.+.+.+...+..+|+-|+.+...+....|+... .++
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i---~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f~ 181 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNI---CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HFV 181 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhcc---CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----Hhh
Confidence 33344445556666665555555554 45566677788887888888888888888888888888877664 345
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
+...+.|.|.|+-|--++..-+..+++.-.+ .+++.+++.|...+.+-... .+....-++.+.+|.++.-+=
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~------~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNS------GYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC------CCCCccCccCCCchHHHHHHH
Confidence 5666778888888877777777777764222 24566666666554321000 000012245567788876666
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
.+.+.+...+.+....-.++++.+++.....+... -.-+...+...+. .+++..|..|+.+||.+...-....----
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~G--nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAG--NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee
Confidence 67777777777888888888888887633222211 1123344444443 57789999999999998763322210111
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~i 1738 (2629)
+..|+..++.+.....|. -..+++++++++..+|..++.+.-.+... ..+..+
T Consensus 334 Ln~L~r~V~~d~~avqrH---------------------r~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~m 386 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRH---------------------RSTILECLKDPDVSIKRRALELSYALVNE------SNVRVM 386 (866)
T ss_pred hhhHHhhhcCCcHHHHHH---------------------HHHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHH
Confidence 344555555554333333 34678888999999999999888777652 456677
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh
Q 000049 1739 LPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2629)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~iv~~~~~ 1770 (2629)
+..++.+|...+++.+......+..+.+.|++
T Consensus 387 v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 387 VKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 88888888777788887766665555555543
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.022 Score=80.61 Aligned_cols=462 Identities=18% Similarity=0.171 Sum_probs=257.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhchhhHHHhHHH
Q 000049 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2629)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2629)
..++..+..+++..|..+.++++.++...+.. +...+...+...+.+ .++-.|.+...++|.+-+..|.-.-.+++.+
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 34455566788888999999999999888765 445555555554554 5778899999999999888776555677788
Q ss_pred HHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhh---hhhhHHHHHHhccCcCch-hHHHHHHHHHHhhhccCcCccc
Q 000049 1966 LIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHI 2040 (2629)
Q Consensus 1966 ll~~l~~~L~d~d-~~VR~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ilp~L 2040 (2629)
-+..+....+|+. |.|+..+..++..+.+..|+-. +...+..++..|-+.... ..-..++ ++.+.+
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~-------~R~~~~-- 1029 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCY-------NRCFNG-- 1029 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhh-------cccccc--
Confidence 7888888888885 5999999999998888777633 233333334444332211 0000000 111110
Q ss_pred chhhhcCCCchhHHHHHHHHHHHhCCChhhhH---------hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc-ccH
Q 000049 2041 LPKLVHLPLSAFNAHALGALAEVAGPGLNFHL---------GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGV 2110 (2629)
Q Consensus 2041 ip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l---------~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~~ 2110 (2629)
-...+.+..+.|+.+.+.. ...+-...=.+..+++.++..++.|+.++-..... -+.
T Consensus 1030 -------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~ 1096 (2067)
T KOG1822|consen 1030 -------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL 1096 (2067)
T ss_pred -------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH
Confidence 0122344444443333222 11111111123456777888888888877543322 347
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHH--------------------HHHHHHHHHhc-CCChhH
Q 000049 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP--------------------NMISTLIVLLS-DSDSTT 2169 (2629)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~--------------------~il~~Ll~ll~-d~d~~V 2169 (2629)
..++..+...+....--.|.++..++..+....-.....|.. .+-..++.+++ ..|...
T Consensus 1097 ~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l 1176 (2067)
T KOG1822|consen 1097 DSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKL 1176 (2067)
T ss_pred HHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHH
Confidence 788888888887776667777777776665443222221111 11223444554 446667
Q ss_pred HHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCC------cccchhhHHHHH------HH
Q 000049 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL------PKALQPLLPIFL------QG 2237 (2629)
Q Consensus 2170 ~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l------~k~l~~ilp~ll------~~ 2237 (2629)
+......|.++......+.+...+....+.+....+.. ....+.|... ..+-...++.-. ++
T Consensus 1177 ~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~s------~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~p 1250 (2067)
T KOG1822|consen 1177 LKNILETLSRMLNSLADELLSSWLMLLKDLLQAAEDFS------ASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSKP 1250 (2067)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc------ccccccccccccchhhcccchhhHHhhhccccccCC
Confidence 77777777776555443333322222223332111100 0001111100 011111222211 12
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhh-------------------hhHHHHHHh---cCCCCHhHHHHHHHH
Q 000049 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIP-------------------ITGPLIRII---GDRFPWQVKSAILST 2295 (2629)
Q Consensus 2238 L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-------------------i~~~Li~~l---~~~~~~~vk~~al~~ 2295 (2629)
+.++-+..|..++.|+-+++..+. ....|.+. -..-|+|+. .-..+...|.+-++.
T Consensus 1251 ~~qprW~Trvfaa~cv~r~i~~c~--a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~ 1328 (2067)
T KOG1822|consen 1251 LVQPRWPTRVFAAECVLRIINVCE--AVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLES 1328 (2067)
T ss_pred ccccccchHHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHH
Confidence 223356778888888887776554 22222211 112244432 122367889999999
Q ss_pred HHHHHHhcCCCcc----------CchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhcc-----CChhHHHHHHHHhhh
Q 000049 2296 LSIIIRKGGIALK----------PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS-----TRVDPLVGDLLSSLQ 2359 (2629)
Q Consensus 2296 L~~L~~~~~~~l~----------p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~-----~~~~~ll~~Ll~~l~ 2359 (2629)
|..++.+.-..-. .|.+|+...+...+.+. +++|-..|.......+..+ ..+..+..-|+..+.
T Consensus 1329 L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl~ 1408 (2067)
T KOG1822|consen 1329 LEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSLD 1408 (2067)
T ss_pred HHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhc
Confidence 9998886533322 35566666666676665 8899999988888775432 234445555565554
Q ss_pred cCC---------------HHHHHHHHHHHHHHHhh
Q 000049 2360 VSD---------------AGIREAILTALKGVLKH 2379 (2629)
Q Consensus 2360 ~~d---------------~~vr~~~l~AL~~vi~~ 2379 (2629)
... .-.+-+++.|+.++...
T Consensus 1409 k~~~g~~~s~~ly~esa~tme~LaiLkAWAEvyv~ 1443 (2067)
T KOG1822|consen 1409 KSQSGKIISSQLYNESASTMEKLAILKAWAEVYVV 1443 (2067)
T ss_pred ccCccccccceeecchHHHHHHHHHHHHHHHHHHH
Confidence 321 22355778999988753
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-05 Score=103.88 Aligned_cols=351 Identities=22% Similarity=0.248 Sum_probs=230.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch-H
Q 000049 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-P 2312 (2629)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-p 2312 (2629)
+.+.+.+.+.++-..++.+|..+.+...+..+ .+++.+.|.+.+.. .++.||..++..++.+.+.-........ +
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 66777777777778888899999887665554 45556667788876 4789999999998887764332111111 4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHH-----HHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChH
Q 000049 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387 (2629)
Q Consensus 2313 ~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~l-----l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~ 2387 (2629)
.+.+.++.++.|++..|...|+.+|..+....+..+.+ +..|...+..++..+|..+++.+..+........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 67888999999999999999999999998766656555 6667777766678889888888777765432222 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHH-----HHHHHHHhhc---CCCC-chh--hHhHHHHHH
Q 000049 2388 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-----DLLQELLNLA---SSPS-WAA--RHGSVLVFA 2454 (2629)
Q Consensus 2388 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~-----~~l~~ll~~~---~~~~-~~~--~~~~~~~l~ 2454 (2629)
+.. .+++.+...+.++|.-++.++.++++.|+. .+. ... .+++.+.+.+ ..+. ... .-+.+..++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPH-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Chh-HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 222 377888888888888899999999999998 332 211 1222332222 1111 100 011112333
Q ss_pred HHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcC---CCCchhhHHHHHHHHhhcCCCCHH
Q 000049 2455 TFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSE 2531 (2629)
Q Consensus 2455 ~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~ 2531 (2629)
.+....|..+.. ....++..+.+...+.++..+..|+.++|.+-.....+. ..........+..+.........+
T Consensus 275 ~la~~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 275 NLARVSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHhcChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 333335555432 345788888888899999999999999997643321100 000124456777777778888999
Q ss_pred HHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhh-------------cCCcchhhhhHHHHHHHHhccccCchhH
Q 000049 2532 VRRRALSALKSVAKANPSAIMVHVALFGPALAECL-------------KDGSTPVRLAAERCAVHAFQLTRGSEYI 2594 (2629)
Q Consensus 2532 vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~-------------~~~~~~vk~aae~a~~~l~~~~~~~~~~ 2594 (2629)
+|..++.++..+....++.-.+.+-.+...+|... +-+=..+|.|+.+-+.++..-+-+-..+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i 428 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREI 428 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999976555422223334455555553 3333447888888888777766554433
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-06 Score=97.46 Aligned_cols=301 Identities=14% Similarity=0.092 Sum_probs=188.2
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI 1535 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i 1535 (2629)
....+++-.+++.+......+...+|.++-.. .+.+...+..+=+.+.+.+.| +.+||..+..|+.+++..-.++ .+
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhh
Confidence 34445556677788888999999999887543 334445566666677777777 7789999999999998764432 12
Q ss_pred --HhHHHHHHhccCCCChhHH-HHHHHHHhccccccC-ChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000049 1536 --ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV-DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2629)
Q Consensus 1536 --~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~-~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~ 1611 (2629)
..-+..+.+.-...+..++ .+...|...+...+- ..-..+.-+|++...+...+..+|..++.++++++-.-...+
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 1223333443333333443 566665542111110 001123457888999999999999999999999875322223
Q ss_pred cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000049 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2629)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~ 1686 (2629)
.+..--|.++|.+..++.++++.++..|..+++.++..- +|. ..-+|.+++.++++... .-.....|+-.+.
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnis 320 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNIS 320 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcc
Confidence 445556789999999999999999999999999988632 232 24467888888765433 2333334444443
Q ss_pred HhhChhHH---HhHhHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHH
Q 000049 1687 AALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAG 1761 (2629)
Q Consensus 1687 ~~~g~~~l---~~llp~l~~~l~~~-~~~vR~~a~~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al 1761 (2629)
-.-+.+.+ ..++..+...+.-. +.+.+-.+...+..++.........+.+ ..+|.+...+-|..-.+|...-.++
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 33232221 34555666666554 5558888888888888644332222222 2566666666676666665544443
Q ss_pred H
Q 000049 1762 H 1762 (2629)
Q Consensus 1762 ~ 1762 (2629)
.
T Consensus 401 a 401 (550)
T KOG4224|consen 401 A 401 (550)
T ss_pred H
Confidence 3
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.023 Score=78.75 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhhccCChh
Q 000049 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWR 1473 (2629)
Q Consensus 1395 ~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~ 1473 (2629)
.+..+-..+-+++...+ |..-+...+..++..++.+...+|..|..|+..+++.=+.- ..+.+...+...+.+....
T Consensus 793 d~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred cchhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 33445555555554332 33333344555667778899999999999999887642221 1245555566778888999
Q ss_pred hhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-hhHHhHHHHHHhccCCCChh
Q 000049 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDH 1552 (2629)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~lvp~Ll~~l~d~~~~ 1552 (2629)
+|.+|++++|.+.-+.|+...+++. .+.+-..|+...||+.+.+-+..++...++ +.+..++-.++....|....
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 9999999999998888777655544 445567899999999999999999876543 23345555566666666554
Q ss_pred HH
Q 000049 1553 TK 1554 (2629)
Q Consensus 1553 ~r 1554 (2629)
+.
T Consensus 947 I~ 948 (1692)
T KOG1020|consen 947 IK 948 (1692)
T ss_pred HH
Confidence 44
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.4e-06 Score=109.74 Aligned_cols=275 Identities=18% Similarity=0.268 Sum_probs=172.0
Q ss_pred hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h------hHHhHHHHHHh
Q 000049 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P------EIASLVPTLLM 1544 (2629)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~------~i~~lvp~Ll~ 1544 (2629)
...|..|+++|..++.-... ...+..|+|-++.++.|+...||..|..+|..+...+++ | ..+-++|.|..
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 35677788888777643222 234688999999999999999999999999888765542 1 11334444444
Q ss_pred ccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHH
Q 000049 1545 GLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 1624 (2629)
Q Consensus 1545 ~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L 1624 (2629)
.+.|. ....+|..-+..++.++.... .|+. +...+
T Consensus 515 l~~d~--------------------------------------~~~~vRiayAsnla~LA~tA~------rFle-~~q~~ 549 (1431)
T KOG1240|consen 515 LLNDS--------------------------------------SAQIVRIAYASNLAQLAKTAY------RFLE-LTQEL 549 (1431)
T ss_pred hhccC--------------------------------------ccceehhhHHhhHHHHHHHHH------HHHH-HHHHH
Confidence 44431 223445444455555544211 0111 11111
Q ss_pred HHH--hcCCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-HhHh
Q 000049 1625 KKV--LVDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHIL 1698 (2629)
Q Consensus 1625 ~~~--L~d~~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-~~ll 1698 (2629)
... +++++.+ ...+..++.. +...+..+...|-.+.+..+|+...+.+..+|.-+|++.- +-++
T Consensus 550 ~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iL 619 (1431)
T KOG1240|consen 550 RQAGMLNDPNSE----------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVIL 619 (1431)
T ss_pred HhcccccCcccc----------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchH
Confidence 111 2333332 0111111111 2233444555555566566788888888888888888754 5577
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh--hhchhhh
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY--ATTSLPL 1775 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~--~~~~i~~ 1775 (2629)
+.++..+++.+|.+|-+++..+..++-..|.. ... .++|.+.++|.|.++.|-..|+.++..+++.. ...++-.
T Consensus 620 shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se---yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~ 696 (1431)
T KOG1240|consen 620 SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE---YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD 696 (1431)
T ss_pred HHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHH---HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 88888899999999988888888888878764 333 37888888999998888888888888887742 3334444
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHhh
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~ 1806 (2629)
++..+.-.+-.+|-=+|.+++..+.....++
T Consensus 697 i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 697 ILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 5555555556666668888887777765543
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.015 Score=75.30 Aligned_cols=219 Identities=17% Similarity=0.217 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc-----CCCCHHHHHHHH-HHHHHHHHhhcHH-h-----HHhhHH
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----SDQVVAVREAAE-CAARAMMSQLSAQ-G-----VKLVLP 1461 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l-----~D~~~~VR~aa~-~al~~i~~~l~~~-~-----v~~ilp 1461 (2629)
+.|-.|-..+-.+.+..+..+.|++..++..-..+. +|-+.-+++.|. .+.+..+..++.. . ...++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 566677777777777777777777766665555555 344455555554 3334333333332 1 244555
Q ss_pred HHHhhhccCChhh-hHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcC--chhHHh
Q 000049 1462 SLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK--NPEIAS 1537 (2629)
Q Consensus 1462 ~Ll~~L~~~~w~~-r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~--~~~i~~ 1537 (2629)
.+- .+.++.|. |+-.+.++|..... ++....-+-+...++++++|. +.-||-++.+++....+... ...+.+
T Consensus 492 El~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 492 ELA--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred Hhh--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh
Confidence 544 23344443 55567788887752 111222355677788899998 66779999999998887543 112222
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
++|.+... +...+.. .+-++|......++.+...++. .+.||
T Consensus 568 ~lenlf~~-----------------------------------lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e--~I~P~ 610 (978)
T KOG1993|consen 568 YLENLFVL-----------------------------------LFKLLKAVEECDTKTSVLNLLSTLIERVSE--HIAPY 610 (978)
T ss_pred hHHHHHHH-----------------------------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--hhhHH
Confidence 22222211 1111110 1125566666677777665543 45677
Q ss_pred HhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1617 IGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1617 l~~ll~~L~~~L~--d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
...++..+-.+-. ...+-.|.+...++..++.++|.+
T Consensus 611 ~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 611 ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 7777766655544 356789999999999999999976
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.022 Score=75.35 Aligned_cols=153 Identities=21% Similarity=0.216 Sum_probs=124.9
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC---
Q 000049 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME--- 2423 (2629)
Q Consensus 2347 ~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~--- 2423 (2629)
+-.++|.|+..+.+.+..+|...+.+|..|+.+.+....-+..+.++++|.+.+.-+|..+|..+-.+|..+....+
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 34577888888887778899999999999999888776678899999999999999999999999999988765543
Q ss_pred hhHHHHHHHHHHhhcCCCC---chhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHH
Q 000049 2424 DGQLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500 (2629)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~---~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll 2500 (2629)
++++..+++.++..-.+++ ..+|..+..++..+.+.-|...+. .+.+.++..|...+.|.+.-+|+-|+.+-+.+-
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 3578889998877555554 457778888999888867766443 477899999999999999999999999877653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=106.53 Aligned_cols=296 Identities=18% Similarity=0.197 Sum_probs=204.4
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
-+++.+..++++-+..+.|..|+..+..++....+ +..+..++|-++.++.|+.+.||-.|..++..+.....+.
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~--- 496 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI--- 496 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC---
Confidence 35566666776655567778888888888876653 4567789999999999999999999988876664322211
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
.|....-+-.-|+|.|-.++.| ....||-+-+.+|..+++..- .+.
T Consensus 497 -------------------------------~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFl 543 (1431)
T KOG1240|consen 497 -------------------------------PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFL 543 (1431)
T ss_pred -------------------------------CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHH
Confidence 1111111123478888889999 677899999999999987542 122
Q ss_pred hHHHHHHh--ccCCCChhHH------HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1537 SLVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2629)
Q Consensus 1537 ~lvp~Ll~--~l~d~~~~~r------~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2629)
.+...+-. .+++|+.++. .-++.| +..+-..+...+.|..+-||+...+.+..+|.-++
T Consensus 544 e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG 610 (1431)
T KOG1240|consen 544 ELTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG 610 (1431)
T ss_pred HHHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Confidence 22222222 2455544211 011111 11223334456678888999999999999998887
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000049 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2629)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~ 1687 (2629)
..+. -+-|++.|...|+|.+|..|.+-+..|.-++-.+|.... +-++|.|.+.|.+.++. +...+..++..+++
T Consensus 611 k~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 611 KEKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIK 685 (1431)
T ss_pred hccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHH
Confidence 6432 345888899999999999999999998888888887644 45678787888766544 56677788877776
Q ss_pred hh--ChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc
Q 000049 1688 AL--GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2629)
Q Consensus 1688 ~~--g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~ 1729 (2629)
.- .+..+.+++..+.-.+.+++.-+|.+++..+..++..++.
T Consensus 686 ~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 686 LGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred hcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 32 2234456666667778899999999999999999887764
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.044 Score=76.16 Aligned_cols=300 Identities=18% Similarity=0.171 Sum_probs=167.9
Q ss_pred HHHHH-HHHHHHHHHhhcChhhhh-hchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000049 2244 ELREQ-AALGLGELIEVTSEQSLK-EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2629)
Q Consensus 2244 ~~r~~-aa~~L~~l~~~~~~~~l~-p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~ 2321 (2629)
+.|.. ...+|..+++..+ .-+. .|+..+-|.|...........+...++..+...+..+...-..|+..|-+.+++.
T Consensus 1051 ~~~~~~~lstL~~FskirP-~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1051 EVRLLAYLSTLFVFSKIRP-QLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred hhHHHHHHHHHHHHHhcCc-hhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 34433 3455666666555 4343 5555544444333222233444455555555555444444445777888888887
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc--cC--ChhHHHHHHHH---hhhcC---C--H---HHHHHHHHHHHHHHhhc------
Q 000049 2322 LQDSTRTVRSSAALALGKLSAL--ST--RVDPLVGDLLS---SLQVS---D--A---GIREAILTALKGVLKHA------ 2380 (2629)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~l~~~--~~--~~~~ll~~Ll~---~l~~~---d--~---~vr~~~l~AL~~vi~~~------ 2380 (2629)
+--.+-..-..|..|+|.++.- ++ .+..++..... .++.+ + . ..-...+..++.+...+
T Consensus 1130 i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~ 1209 (1692)
T KOG1020|consen 1130 IVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPS 1209 (1692)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCcc
Confidence 7666666667788999998652 21 23333333333 33322 1 1 11122233444444422
Q ss_pred --CCC---cChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChh----HHHHHHHHHHhhcCCCCchhhHhHHH
Q 000049 2381 --GKS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG----QLADLLQELLNLASSPSWAARHGSVL 2451 (2629)
Q Consensus 2381 --g~~---~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~----~~~~~l~~ll~~~~~~~~~~~~~~~~ 2451 (2629)
|.. ..+...+.++.+|.-...+.+..+|..|...+|.++...|.= ++..++..+++...++. ..+..+..
T Consensus 1210 ~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~-~~ki~~l~ 1288 (1692)
T KOG1020|consen 1210 NDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDI-KSKIQLLQ 1288 (1692)
T ss_pred CCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccH-HHHHHHHH
Confidence 111 123567788888888888889999999999999999776642 23333333333211111 11211222
Q ss_pred HHHHHHhhC--------------------------CccccC----ChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHh
Q 000049 2452 VFATFLRHN--------------------------PSAISM----SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2629)
Q Consensus 2452 ~l~~~l~~~--------------------------p~~~~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2629)
.+...+.+. ...... ......+++.+.+.+-+.+..+|..|+..+.-.|.
T Consensus 1289 n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~ 1368 (1692)
T KOG1020|consen 1289 NLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILN 1368 (1692)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 222222100 000111 12445567777788888889999999998875554
Q ss_pred hhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000049 2502 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2629)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~ 2552 (2629)
-+. . ++...+|-++..-.|+....|..|...+.-+-++.+..|-
T Consensus 1369 QGL-V------hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~ 1412 (1692)
T KOG1020|consen 1369 QGL-V------HPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVF 1412 (1692)
T ss_pred ccC-C------CccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 432 2 3456777788777788888888888888877776665553
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0026 Score=78.50 Aligned_cols=288 Identities=14% Similarity=0.040 Sum_probs=162.0
Q ss_pred HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcC-hhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q 000049 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920 (2629)
Q Consensus 1842 ~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~ 1920 (2629)
+....+.|-..++|.-..|.-.+...+.++.... + .+++...+..+-..|.++....|..|.+.|.++....+..+
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~---~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG---SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 3334444444456766677777777777766532 2 24566667777778889999999999999999998766542
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000049 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2629)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2629)
. ..-+-+...+.|.+. .-+.+++..++.....+.+ +.++..+...+.|-....+..+..++..++-.++. -
T Consensus 339 ~-vcN~evEsLIsd~Nr---~IstyAITtLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-k 409 (898)
T COG5240 339 S-VCNKEVESLISDENR---TISTYAITTLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-K 409 (898)
T ss_pred e-ecChhHHHHhhcccc---cchHHHHHHHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-H
Confidence 1 122334445555553 3455667766654433333 33333333444444434444555566666554443 3
Q ss_pred hhhhHHHHHHhccCcCc---hhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHH
Q 000049 2001 IDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILP 2077 (2629)
Q Consensus 2001 ~~~ilp~Ll~~L~~~~~---~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~ 2077 (2629)
...++..|.+.|.++.. ..++.+++..++.- ......+|+..|..
T Consensus 410 ~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~-----------------~p~skEraLe~LC~--------------- 457 (898)
T COG5240 410 KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN-----------------DPDSKERALEVLCT--------------- 457 (898)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh-----------------CchHHHHHHHHHHH---------------
Confidence 44566666666655322 13445555555421 01123344444443
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHH
Q 000049 2078 ALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIS 2156 (2629)
Q Consensus 2078 ~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~ 2156 (2629)
++.|.. ..+.+...++.+...... ..-..++..+.+++--+|..+|.+|+.+|..|+-+....+.+ ..+..
T Consensus 458 ----fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~ 529 (898)
T COG5240 458 ----FIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVEN 529 (898)
T ss_pred ----HHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHHH
Confidence 232221 111222233333222111 112233444444444567899999999999997665444443 35666
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHH
Q 000049 2157 TLIVLLSDSDSTTVAAAWEALSRVV 2181 (2629)
Q Consensus 2157 ~Ll~ll~d~d~~V~~~a~~aL~~l~ 2181 (2629)
.|-++++|.|++||+.|.-++..+-
T Consensus 530 ~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 530 ALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7778899999999999988877763
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=86.23 Aligned_cols=93 Identities=26% Similarity=0.355 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh
Q 000049 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1395 ~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
.|.+++.++..++.+++..+.+|+..++|.++.++.|++..||..|++++..+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~-------------------------- 55 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNIS-------------------------- 55 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH--------------------------
Confidence 588999999999999998899999999999999999999888888766665553
Q ss_pred hHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
......+-.++++|++.+.+++.|+++.||.+|. .|.++
T Consensus 56 ------------k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 56 ------------KVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 3333444457789999999999999999998874 44444
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.025 Score=74.07 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhc
Q 000049 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQV 2360 (2629)
Q Consensus 2283 ~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l-~~~~~~~~~ll~~Ll~~l~~ 2360 (2629)
.+++-++..+.-+|+.++-..+...+. +++.|++.|.-. .-.+|+...-++|.+ +.|...++.|+|.+-..+++
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC
Confidence 356778888999999998776654444 455566666554 678999999999999 55667889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2361 SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
+++-||...+--|..+++.. + ..+.+.++--..-.+-|.++++|+-+-.|+|.+...-.+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~---~-vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFG---I-VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhh---h-hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 99999998888888877631 1 234444444344445688999999999999998876443
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.031 Score=71.99 Aligned_cols=256 Identities=19% Similarity=0.284 Sum_probs=133.9
Q ss_pred hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh----------hhccchHHHHh--hhhcCCCHHHHHHHHHH
Q 000049 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----------QCLPKIVPKLT--EVLTDTHPKVQSAGQTA 1522 (2629)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~----------~~L~~ivp~L~--~~L~D~~~~VR~aA~~a 1522 (2629)
.+...+...+..-.+.+|+.-..|+..+..++++-+..-. ..+..+.+.++ +++.++|+.|+-.-.+.
T Consensus 437 ~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ 516 (980)
T KOG2021|consen 437 NIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMEL 516 (980)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHH
Confidence 3455555555566678899999999999999987554211 11223333332 34566777777655555
Q ss_pred HHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000049 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2629)
Q Consensus 1523 L~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~ 1602 (2629)
+.+..+.+... ...+|.++.+.-|+ +++.+.+.+||..+.-....
T Consensus 517 ivRY~kff~~e--sq~ip~vL~aFld~---------------------------------rglhn~ne~Vr~RawYLF~R 561 (980)
T KOG2021|consen 517 IVRYNKFFSTE--SQKIPLVLNAFLDS---------------------------------RGLHNKNENVRLRAWYLFTR 561 (980)
T ss_pred HHHHHHHHhcc--hhhhHHHHHHHccc---------------------------------hhccccccccchHHHHHHHH
Confidence 55443333210 12333333332222 34555566677777666666
Q ss_pred HhhhcCCCCcccchHhhhHHHHHHHhcCCCHH------------HHHHHHHHHHHHHhhhC--CC----Cchhh------
Q 000049 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE------------VRSVAARAIGSLIRGMG--EE----NFPDL------ 1658 (2629)
Q Consensus 1603 l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~------------VR~~A~~aL~~l~~~~g--~~----~~~~l------ 1658 (2629)
+.+.+. +.+.||.+.++..+..+|..+.+. -+.-.++++|-++..-. .+ +...+
T Consensus 562 fVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~ 639 (980)
T KOG2021|consen 562 FVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLIL 639 (980)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHH
Confidence 665542 356667777777776666322111 11122233333322100 00 11111
Q ss_pred ---HHHHHHHhccCCC----hHHHHHHHHHHHHHHHhhCh-----------hHHHhHhHHHHHhhc--CCChhhHHHHHH
Q 000049 1659 ---VSWLLDALKSDNS----NVERSGAAQGLSEVLAALGT-----------VYFEHILPDIIRNCS--HQRASVRDGYLT 1718 (2629)
Q Consensus 1659 ---l~~Ll~~L~~~~~----~~~R~~a~~~L~~i~~~~g~-----------~~l~~llp~l~~~l~--~~~~~vR~~a~~ 1718 (2629)
+-.+...+.++.+ ...-..++.+++.+.+++.. ..+...+..++..+. .....+|.+.-.
T Consensus 640 ~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrf 719 (980)
T KOG2021|consen 640 DQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRF 719 (980)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 1111122222221 12345566666666654321 134444444433332 345677888888
Q ss_pred HHHHhhhhhccchHhhHHhHHHHHHhhcC
Q 000049 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2629)
.+.++..++|++..||+++.+..+++...
T Consensus 720 t~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 720 TFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 88888888888888888888888887654
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0005 Score=90.04 Aligned_cols=361 Identities=18% Similarity=0.181 Sum_probs=217.3
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc--
Q 000049 1340 SRLLDQLMKSDKY--GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-- 1414 (2629)
Q Consensus 1340 ~~ll~~L~~~~~~--~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~-- 1414 (2629)
|.++..|.+.++. .........|+.++..... +.+. ..++..+...++.+.+...-.+.+..+..+.+......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 4455555544322 3344444555555543221 1111 14555555555544455566677777777766544222
Q ss_pred ---hhHHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhc----------cCCh-
Q 000049 1415 ---EPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----------DKAW- 1472 (2629)
Q Consensus 1415 ---~~~v~~-ilp~ll~~l~-----D~--~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----------~~~w- 1472 (2629)
.-|... ++|.++...- +. ++.+=+.+...++.++..++......++..+...+- +..+
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 334443 7777766542 12 256777778888888888888877666666665443 1111
Q ss_pred -hhhHHHHHHH-HHHHhhCchhhhhhccchHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCch-hHHhHHHHHHhcc-C
Q 000049 1473 -RTKQSSVQLL-GAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGL-T 1547 (2629)
Q Consensus 1473 -~~r~~a~~~L-~~la~~~p~~l~~~L~~ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l-~ 1547 (2629)
......+.++ +.++...++...+...+++..+..... ..++..|..+++++..++..+.+. .++.++..+.... .
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~ 240 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS 240 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc
Confidence 1222223333 333333333322344556666666644 345889999999999998776443 3455555554443 1
Q ss_pred CCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHH
Q 000049 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2629)
Q Consensus 1548 d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~ 1627 (2629)
... ...|..+..++..+.+.+-- -..|....+...+..+
T Consensus 241 ~~~---------------------------------------~~~~~~~~~~~~Wi~KaLv~--R~~~~~~~~~~~L~~l 279 (415)
T PF12460_consen 241 SED---------------------------------------SELRPQALEILIWITKALVM--RGHPLATELLDKLLEL 279 (415)
T ss_pred cCC---------------------------------------cchhHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHH
Confidence 111 12222222322222221100 0013344556666666
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhC----------------CCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh
Q 000049 1628 LVDPIPEVRSVAARAIGSLIRGMG----------------EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2629)
Q Consensus 1628 L~d~~~~VR~~A~~aL~~l~~~~g----------------~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~ 1691 (2629)
+.+ +++...++++++.+..-.+ ...|..++|.+++..++.... .|.....+++.+++.++.
T Consensus 280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPK 356 (415)
T ss_pred hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCH
Confidence 666 6778888888888876421 114678899998888765433 567778899999999887
Q ss_pred hH----HHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhh
Q 000049 1692 VY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1692 ~~----l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2629)
+. ++.++|.+++.+..+++.++.+++.++..+...-++.+.+|++.++|.+++.
T Consensus 357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 74 4789999999999999999999999999999888888999999999998763
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=107.37 Aligned_cols=339 Identities=17% Similarity=0.215 Sum_probs=218.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHh
Q 000049 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2629)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ll 1698 (2629)
+..+...+.-..+..-..++.++..++...|... ...+++ .+..+. +..+|..+...+.++.+..|......+
T Consensus 100 ~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~- 174 (815)
T KOG1820|consen 100 VEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL- 174 (815)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc-
Confidence 3444444555566666778888888888777542 122221 112222 234677777777777777775421111
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC-hhHHH--HHHHHHHHH--------HH-
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-ESVRD--AALGAGHVL--------VE- 1766 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-~~VR~--~al~al~~i--------v~- 1766 (2629)
.+......++.+..+.|.....+..+--+.......++. +++.. .....+... ..
T Consensus 175 -------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 175 -------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred -------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 133344444444444443222222222222222222211 11100 000000000 00
Q ss_pred --Hh-hhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHH
Q 000049 1767 --HY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2629)
Q Consensus 1767 --~~-~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~ 1843 (2629)
.+ ..+..+.+-|.++..+.+++|+.|..+++-+...+....+. . ... +.+
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~---------~-~~~-----------------~~~ 294 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE---------I-VKG-----------------YTG 294 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc---------c-ccC-----------------cch
Confidence 00 11234457788899999999999999999888877542200 0 000 111
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhh
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1923 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1923 (2629)
.+.-.+-....|.+..|-..|+.++..++...+..+..|.....+.++.++.+.....|.....++..++.. ..+..
T Consensus 295 ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~~ 371 (815)
T KOG1820|consen 295 LLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLSK 371 (815)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHHH
Confidence 122222334689999999999999999999998889999999999999999999999999999999888873 24567
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchh-hHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
+.+.+..++++.+|..|..+..++...+...++. ....-..+++|.+..+.+|.+.+||.+|..+++.+++.+|...+.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7888888999999999999999999888877743 234456889999999999999999999999999999999987766
Q ss_pred hhHHH
Q 000049 2003 EIVPT 2007 (2629)
Q Consensus 2003 ~ilp~ 2007 (2629)
.++..
T Consensus 452 k~L~~ 456 (815)
T KOG1820|consen 452 KLLKD 456 (815)
T ss_pred HHHHh
Confidence 55443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.025 Score=72.78 Aligned_cols=281 Identities=21% Similarity=0.216 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHH
Q 000049 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1636 R~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
-.-|.-++|.+-...|. +....|.+.|++.+...+|.|++-+++-...+.... ++...+...+...+.-.-++
T Consensus 396 EGGalyAlGLIhA~hG~----~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~---eiYe~lKevLy~D~AvsGEA 468 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGR----GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE---EIYEKLKEVLYNDSAVSGEA 468 (929)
T ss_pred ccchhhhhhccccCcCc----cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH---HHHHHHHHHHhccchhhhhH
Confidence 34677777776655554 467778888887777788999988776543332222 22233333333333434444
Q ss_pred HHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHH--HHHHhhhchhhhHHHHHhhccCCCchHHH
Q 000049 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHV--LVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792 (2629)
Q Consensus 1716 a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~-~~~VR~~al~al~~--iv~~~~~~~i~~llp~l~~~l~d~~~~vR 1792 (2629)
+-..++-+...... .+.+.-++.+-.+. ++.+. +++.. -+..|+.. +..-|.+.+.+.|++.-.|
T Consensus 469 Agi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~----RGl~vGiaL~~ygrq--e~Ad~lI~el~~dkdpilR 536 (929)
T KOG2062|consen 469 AGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKII----RGLAVGIALVVYGRQ--EDADPLIKELLRDKDPILR 536 (929)
T ss_pred HHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHH----HHHHHhHHHHHhhhh--hhhHHHHHHHhcCCchhhh
Confidence 44444433321111 23444444444332 23322 22221 11123322 1223344445566666677
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHH-HhhccCccHHHHHHHHHHHHHH
Q 000049 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL-YMVRSDVSLSVRQAALHVWKTI 1871 (2629)
Q Consensus 1793 ~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L-~~~~~D~~~~VR~aA~~~l~~l 1871 (2629)
.+.+-.++- ...|... +..+..+ ....+|.+..||++|+..++-+
T Consensus 537 ~~Gm~t~al---------------------------------Ay~GTgn-nkair~lLh~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 537 YGGMYTLAL---------------------------------AYVGTGN-NKAIRRLLHVAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred hhhHHHHHH---------------------------------HHhccCc-hhhHHHhhcccccccchHHHHHHHHHheee
Confidence 655433221 1111111 1122222 2346899999999999999988
Q ss_pred HhcChhhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000049 1872 VANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1872 ~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
+-..|.+ .+..+..|. +-|+.+|..++-+||-.|...|.. ..+..|.....|+..-||+++|.+++-+
T Consensus 583 l~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 583 LFRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred EecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 7766653 233333333 558899999999999888777754 3344455556688888999999999988
Q ss_pred HHhhchhhHHHhHHHHHHHHHHHhcCCcHHH
Q 000049 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEV 1981 (2629)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~d~d~~V 1981 (2629)
+.++.+ ..-|.+..+...+.+.+.|.+++.
T Consensus 652 m~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 652 MIQQTE-QLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHhccc-ccCchHHHHHHHHHHHhhhhhhHH
Confidence 776653 345556777777778888876654
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0012 Score=86.46 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=164.2
Q ss_pred hHhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhchhhh
Q 000049 2071 HLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2071 ~l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~~~-~~~~~~ll~~Ll~~l-~d~~~~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
....++..+++.. ...++..|..+..++..++..+. .+.+..++..+.... ...+...|..+...+.-+.+..-...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4555666666664 44558888888899988887764 345778888777777 45556677777777766665543344
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccc
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l 2227 (2629)
.+....++..|+.++++ +++...+..+++.++...+. .+. .... ..+.-+...+..
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~-----------~~~~----------a~vklLykQR~F 321 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLN-----------KENH----------ANVKLLYKQRFF 321 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcC-----------cccc----------chhhhHHhHHHH
Confidence 56677888899999987 56777788888887654211 100 0000 011111112455
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
..++|.++++..+.+.+.|.....+|+.+.+++|.+.+.++++.+.+-|++.+.-. +.+++.+++++|..++..-+..+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHH
Confidence 67899999999998888999999999999999999999999999999999999654 77899999999999999877777
Q ss_pred cCchHHHHHHHHH
Q 000049 2308 KPFLPQLQTTFIK 2320 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k 2320 (2629)
.+|+..+++.+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776655
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0012 Score=85.95 Aligned_cols=435 Identities=17% Similarity=0.169 Sum_probs=243.2
Q ss_pred HhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch
Q 000049 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2629)
Q Consensus 1454 ~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2629)
..+..++|.++...+..+-..|+-.-.-+...+..-|..-. ..++.++.-..|++|.+|.-|.+.++.+.- +.
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~ 117 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DK 117 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEee---hH
Confidence 45667778777777776666666555555555555554322 124445556677788888777766654431 01
Q ss_pred hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000049 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2629)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2629)
....+...+.+.++|.++.+|+.+..++..+... +++..
T Consensus 118 ---------------------------------------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~ 156 (734)
T KOG1061|consen 118 ---------------------------------------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV 156 (734)
T ss_pred ---------------------------------------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc
Confidence 1122333445566666777777777777766543 11111
Q ss_pred cchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 000049 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2629)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~ 1689 (2629)
.-..+++.|..++.|.+|.|-..|..++..+.+.-... ....++..++..+..-+.+ +-+..+.......
T Consensus 157 --~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW----~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 157 --EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW----GQIFILDCLAEYV 230 (734)
T ss_pred --cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh----hHHHHHHHHHhcC
Confidence 12357788888888999999999999998888755432 2244555555555443322 1222333334433
Q ss_pred ChhH--HHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1690 GTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1690 g~~~--l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
..+. ...++..+...+++.++.+--++..++-.+...+..--..++..+-|+++..+..+. ++.-.+++-...++..
T Consensus 231 p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred CCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 3332 234555555566667777766777777766665555333456677788887777665 6666677776666654
Q ss_pred hhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHH
Q 000049 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2629)
Q Consensus 1768 ~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~ 1847 (2629)
.+.- ...-+..+.-.-.|. --++..=++.+..+ ...+...+++.
T Consensus 310 ~p~~-~~~~~~~Ff~kynDP-iYvK~eKleil~~l----------------------------------a~~~nl~qvl~ 353 (734)
T KOG1061|consen 310 RPEI-LKVEIKVFFCKYNDP-IYVKLEKLEILIEL----------------------------------ANDANLAQVLA 353 (734)
T ss_pred ChHH-HHhHhHeeeeecCCc-hhhHHHHHHHHHHH----------------------------------hhHhHHHHHHH
Confidence 4321 100000000000111 11222222222221 12222334455
Q ss_pred HHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 000049 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2629)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1927 (2629)
.+...-.+.+.+.-+.|+.+++.++....+. ..+++.++..+.-...-+-+.+...+.++.++.+... ..+.+.
T Consensus 354 El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~ 427 (734)
T KOG1061|consen 354 ELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAI 427 (734)
T ss_pred HHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhh
Confidence 5544556666676777888888887644432 3445555555553333344556667777888776553 455555
Q ss_pred HhhhcCC-CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000049 1928 LSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2629)
Q Consensus 1928 L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~ 1991 (2629)
+-..+.+ .+|+.|.+..+-+|+-.... +....++..+.+...|....|+-.-..+.-+
T Consensus 428 l~~~~~sl~epeak~amiWilg~y~~~i------~~a~elL~~f~en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 428 LCENLDSLQEPEAKAALIWILGEYAERI------ENALELLESFLENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred hcccccccCChHHHHHHHHHHhhhhhcc------CcHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 5555544 56888888888887643332 2234556666677777777776654433333
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.012 Score=75.30 Aligned_cols=257 Identities=15% Similarity=0.191 Sum_probs=164.3
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~ 2187 (2629)
+-.+.+-+.++..+++.-+-+|.-|+.++..+|...+..+.+ .++.|..-++|+|+.|+.+|...++.+.+..|+.
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~----~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 445778888899999999999999999999888766655544 4556777789999999999999999999999998
Q ss_pred cccchHHHHHHHHhhhhhhhhhhhcCCc-ccccC-CC--CcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChh
Q 000049 2188 VQPSYIKVIRDAISTSRDKERRKKKGGP-ILIPG-FC--LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ 2263 (2629)
Q Consensus 2188 ~l~~l~~~l~~~l~~~~~~~~~~~~~~~-~~l~g-~~--l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~ 2263 (2629)
+++ +-+.+...+.+... .|..-- ..+.| +. -|+--..++|.+.+.+.+.... .-..+|+..++...=..
T Consensus 216 yL~-LAP~ffkllttSsN----NWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 216 YLQ-LAPLFYKLLVTSSN----NWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSS 288 (877)
T ss_pred ccc-ccHHHHHHHhccCC----CeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhcc
Confidence 764 23333333322211 121100 00100 00 1333344667776666554321 22356666666541001
Q ss_pred hhhhch--hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 2264 SLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2264 ~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~ 2341 (2629)
....+. .+++-.=+|++-+..+++.|...|.+++.++...+..+ ..-...+++||.|.++++|..|...|-.++
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V----qa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV----QAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH----HHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 111111 11221123444444588999999999999988655433 334567899999999999999998876664
Q ss_pred hccCChhHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHhhc
Q 000049 2342 ALSTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHA 2380 (2629)
Q Consensus 2342 ~~~~~~~~ll~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~ 2380 (2629)
. ..++-.++..|+..+..++ ...|..++..+-++++..
T Consensus 365 s-kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 365 S-KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred h-hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 3 3567788888888875555 367777776666666543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.036 Score=69.02 Aligned_cols=185 Identities=13% Similarity=0.096 Sum_probs=115.5
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
...+..+.|.|...+.++-.-+...++..+..++..- .-..++++.+..|...|..+....|-.|.+.|..++...
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 3455678888888888876677777777777766431 112467788888999999998899999999999998876
Q ss_pred CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1651 GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1651 g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
++.. .-.-+.+ +.|-++. .|.-+..++..+++.-..+..+.++..+.....+-+...|.-++.++..++..++..
T Consensus 335 P~kv-~vcN~ev-EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 335 PQKV-SVCNKEV-ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred Ccee-eecChhH-HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 6541 1111111 1122222 355667777777776555556666555555555555556666677777777777765
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
...|+.-+...+++ ...-+.+..+.+++..+++.
T Consensus 410 ~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~ 443 (898)
T COG5240 410 KLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMEN 443 (898)
T ss_pred HHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhh
Confidence 55555544444433 12223445555555555443
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0013 Score=79.60 Aligned_cols=508 Identities=16% Similarity=0.176 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHHHHHhcChh-hHhhhHHHHHH---------HHHHHhcCCCHHHHHHHHHHHHHHHHHh----------c
Q 000049 1858 LSVRQAALHVWKTIVANTPK-TLKEIMPVLMN---------TLISSLASSSSERRQVAGRALGELVRKL----------G 1917 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~-~l~~~l~~Ll~---------~L~~~L~~~~~~~R~~A~~~L~~lv~~~----------~ 1917 (2629)
..||..|+.++.......++ .+..|...++| .+.-.++|+++..|..|.+.+..+.... |
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 56888898888887776553 33344444333 1223467899999999999998887532 2
Q ss_pred cc-hhh----------hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhchhhH-HHhHHHHHHHHHHHhcCCcHHHHHH
Q 000049 1918 ER-VLP----------SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRES 1984 (2629)
Q Consensus 1918 ~~-~l~----------~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~ 1984 (2629)
+. +.| +.-.++...+. +..+.+...+..+|+.++....-..+ ..++..+...+.+.+...|+.||-.
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs 169 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS 169 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence 21 222 11122222222 34556666677788877766544444 3456777888888888999999999
Q ss_pred HHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc----h---hHHHHHHHHHHhhh--------ccC-------cCcccch
Q 000049 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT----S---DTALDGLKQILSVR--------TTA-------VLPHILP 2042 (2629)
Q Consensus 1985 A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~----~---~~aL~~L~~il~~~--------~~~-------ilp~Lip 2042 (2629)
+...++.+..... .+|.+-..+..... . ...-+..++++... +.. ++...+.
T Consensus 170 ~l~~~~~~v~t~~------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~ 243 (728)
T KOG4535|consen 170 SLTLLGAIVSTHA------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCIS 243 (728)
T ss_pred HHHHHHHHHhcCC------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeee
Confidence 8888887764322 12222222211100 0 00111222222110 000 0000000
Q ss_pred hhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHhh
Q 000049 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESLVSELLKG 2120 (2629)
Q Consensus 2043 ~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~~~~ll~~Ll~~ 2120 (2629)
....++-..+ ......+++|. +..+ ..+|-.+...+..+...++- .++-.+...+..+
T Consensus 244 i~~~~~~~s~---~~~~~~~~~~~----------------~~~p-s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~ 303 (728)
T KOG4535|consen 244 IVVLPKEDSC---SGSDAGSAAGS----------------TYEP-SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKC 303 (728)
T ss_pred eeecCCcccc---chhhHHhhhcC----------------ccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000111111 11111111111 1111 23555556666555555442 4466677777888
Q ss_pred cCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc--cc----ccchHH
Q 000049 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK--EV----QPSYIK 2194 (2629)
Q Consensus 2121 l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~--~~----l~~l~~ 2194 (2629)
+.+.++.+...+..++..+.......+.|. .....+..+ ++..+...-+. .. .+.+.-
T Consensus 304 ~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~-------------~~k~~~q~~---~fw~~~l~~p~~~~~YDs~~~Tl~~ 367 (728)
T KOG4535|consen 304 MGEADPSIQLHGAKLLEELGTGLIQQYKPD-------------STKAPDQRA---PFWTMMLNGPLPRALYDSEHPTLQA 367 (728)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcCCC-------------cccchhhhc---cHHHHHccCCChhhhhhhcCCCchh
Confidence 888888888888877777665433222221 011122221 11111111111 11 111111
Q ss_pred HHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhh
Q 000049 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2629)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~ 2273 (2629)
...+.+... + ..+-..+|.+-....++|+.|..+. +.-++..|.++++-++-+-+......|+..-.
T Consensus 368 s~Cdals~i---------~---~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa 435 (728)
T KOG4535|consen 368 SACDALSSI---------L---PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAA 435 (728)
T ss_pred HHHHHHhhc---------C---chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHH
Confidence 111221111 1 0222234555566778888777643 33466677777777766555444455555555
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc---cCch----HHHHHHHHHH--cCCC-CHHHHHHHHHHHHHHHhc
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL---KPFL----PQLQTTFIKC--LQDS-TRTVRSSAALALGKLSAL 2343 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l---~p~l----p~L~~~~~k~--L~d~-~~~vR~~Aa~aLg~l~~~ 2343 (2629)
....+.++++ .-.+|..+..+++.+-..+...+ ..+. ..+....+.. ..+. +..||.+|..+||++..+
T Consensus 436 ~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 436 NAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 5566777764 45677777778876655432221 1122 2222222222 2333 678999999999998542
Q ss_pred -cCChhHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhhcCCCc-ChHHHHHHHHHHHHhhcC-CCHHHHHHH
Q 000049 2344 -STRVDPLVGDLLSSLQ---------VSDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKDLVYH-DDDHVRVSA 2411 (2629)
Q Consensus 2344 -~~~~~~ll~~Ll~~l~---------~~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~~l~~-~~~~vr~~a 2411 (2629)
++-...-+.++.+.-. .....||-++++++..++.+-.-.+ +.+..+.+++.|..++.+ .+-.+|..|
T Consensus 515 lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 515 LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 3322333333333321 1136889999999999997643322 246788888888887776 477899999
Q ss_pred HHHHHHHHh
Q 000049 2412 ASILGIMSQ 2420 (2629)
Q Consensus 2412 a~~Lg~L~~ 2420 (2629)
|.+|..-.+
T Consensus 595 A~aL~vp~~ 603 (728)
T KOG4535|consen 595 AAALSVPGK 603 (728)
T ss_pred hhhhcCCCC
Confidence 877765444
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.059 Score=69.57 Aligned_cols=338 Identities=15% Similarity=0.143 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhhhCcchhhhhcHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHh--ccCchhHHH-HHHHHHH
Q 000049 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKL--GRLFEPYVI-QMLPLLL 1426 (2629)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~Al~al~~La~~~--~~~~~~~v~-~ilp~ll 1426 (2629)
+|+.++-.+....+...+. ++++++...+. +-++++..++|+..+..+..-. ...+...+. -++++++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 5556666666666666665 78888887772 1236788889999999988722 233333333 3688888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhh--CchhhhhhccchHHH
Q 000049 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPK 1503 (2629)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~--~p~~l~~~L~~ivp~ 1503 (2629)
..+.++.-..|..+++.+..+-..+++.++ -.........+.+..-.++..|..++..+... ....++.+.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 899999989999999988888667766654 45566666777777778888888888877764 334577888999999
Q ss_pred HhhhhcCCCHHHHHHHHHHH-HHHhhhcCc--hhH-HhHHHHHHh----ccCCCCh---hHH----HHHHHHHhc-cccc
Q 000049 1504 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLM----GLTDPND---HTK----YSLDILLQT-TFVN 1567 (2629)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~lvp~Ll~----~l~d~~~---~~r----~al~~L~~~-~~~~ 1567 (2629)
++.+-++-+.++-..+.+++ +.+.+.+.. +++ ..++..+++ .+..+++ .+. .|...|... +..-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 99888876666655555443 344444431 222 334443333 2333311 111 122211110 1110
Q ss_pred cCC-h-----hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCH-HHHHHHH
Q 000049 1568 TVD-A-----PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2629)
Q Consensus 1568 ~~~-~-----~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~-~VR~~A~ 1640 (2629)
..+ . ..-..+.|.+.=.+.+.-.+.-+.|++++.+..-.. +++.|....+...+.+++.++.. .--+.++
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 1 122334455544455555677788888887654322 34555556666666666666543 4456667
Q ss_pred HHHHHHHhhhCCC------CchhhHHHHHHHhccCCC-hHHHHHHHHHHHHHHHhhChhHHHhHhH
Q 000049 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2629)
Q Consensus 1641 ~aL~~l~~~~g~~------~~~~ll~~Ll~~L~~~~~-~~~R~~a~~~L~~i~~~~g~~~l~~llp 1699 (2629)
-++..++..-+.+ +..-+...+...+.++.. -.++.++++-+-.++-.++.+.++..+|
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~p 769 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLP 769 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhH
Confidence 7777776643332 122233333344444332 1345555555555555554444444444
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0027 Score=82.82 Aligned_cols=402 Identities=17% Similarity=0.188 Sum_probs=224.6
Q ss_pred cCCCcch-hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000049 1293 KDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2629)
Q Consensus 1293 ~~~~~l~-~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2629)
...|... ..+..+++...++++.+|..+...++.+- ++.-...++..+...+. +++.-+|+.++.|.+.+-. .++
T Consensus 78 ~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~--v~~i~ey~~~Pl~~~l~-d~~~yvRktaa~~vakl~~-~~~ 153 (734)
T KOG1061|consen 78 KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR--VDKITEYLCDPLLKCLK-DDDPYVRKTAAVCVAKLFD-IDP 153 (734)
T ss_pred ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe--ehHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhc-CCh
Confidence 3445443 34678888899999999998877665431 12222344445555443 4456789999999888775 344
Q ss_pred chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000049 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1372 ~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~-~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2629)
+.....++++.|.+++.|. ++.+-..|+-++..+.+.-+.. ......+++..++..+..-+..-+- ..+..+...
T Consensus 154 ~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhc
Confidence 4444458899999999876 7888888999999988865531 1122234555555555443333222 223333333
Q ss_pred hcHH--hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1451 LSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1451 l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
.+++ ....++..+...|.+.+..+..+++..+-......+......+..+-|.++.++.- .++++-.|..-+..+..
T Consensus 230 ~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 230 VPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQ 308 (734)
T ss_pred CCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHH
Confidence 3322 23456666666677777767777777766655544443233344455555554443 44777666665555544
Q ss_pred hcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2629)
Q Consensus 1529 ~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2629)
...+ .+..-+..++-..+||- .++..-.+++..++..
T Consensus 309 ~~p~-~~~~~~~~Ff~kynDPi----------------------------------------YvK~eKleil~~la~~-- 345 (734)
T KOG1061|consen 309 KRPE-ILKVEIKVFFCKYNDPI----------------------------------------YVKLEKLEILIELAND-- 345 (734)
T ss_pred hChH-HHHhHhHeeeeecCCch----------------------------------------hhHHHHHHHHHHHhhH--
Confidence 3221 11111111111112221 1122222233222221
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 000049 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2629)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~ 1688 (2629)
..+++++.-+.....+-+.+.-..+++|+|.++....+. .+.++.|++.+....++ +...+...+-.+.+.
T Consensus 346 ------~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~y-vvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 346 ------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDY-VVQEAIVVIRDILRK 416 (734)
T ss_pred ------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhc
Confidence 123345555555555666666777888888887766654 66777777776644333 222333444445544
Q ss_pred hChhHHHhHhHHHHHhhcC-CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHH
Q 000049 1689 LGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAG 1761 (2629)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~-~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al 1761 (2629)
++..+ +.+++.+-....+ .+|+.|.+.++.++..+..+.+ ...++..+++...|+...|+-.-+.+.
T Consensus 417 yP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ 484 (734)
T KOG1061|consen 417 YPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLTAA 484 (734)
T ss_pred CCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 44332 4444444444333 4677888888888887777655 244666677777777777765544443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.6e-06 Score=81.61 Aligned_cols=87 Identities=20% Similarity=0.346 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCC
Q 000049 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPN 1550 (2629)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~ 1550 (2629)
.|++++..|.+++...++...++++.|+|.++.++.|++++||.+||++|.++++..++ +++.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58899999999999888889999999999999999999999999999999999998876 356888999999999999
Q ss_pred hhHHHHHHHH
Q 000049 1551 DHTKYSLDIL 1560 (2629)
Q Consensus 1551 ~~~r~al~~L 1560 (2629)
+.+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888655443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00066 Score=86.40 Aligned_cols=279 Identities=21% Similarity=0.215 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCCc
Q 000049 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPS 1313 (2629)
Q Consensus 1234 ~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~ 1313 (2629)
..++-|.--+-..||.+..+.|. +++.+. ..+.+|.+++.=+|-.+. -..-+.+.+.+-..|..++
T Consensus 397 GGalyAlGLIhA~hG~~~~~yL~----~~Lk~~-----~~e~v~hG~cLGlGLa~m-----GSa~~eiYe~lKevLy~D~ 462 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRGITDYLL----QQLKTA-----ENEVVRHGACLGLGLAGM-----GSANEEIYEKLKEVLYNDS 462 (929)
T ss_pred cchhhhhhccccCcCccHHHHHH----HHHHhc-----cchhhhhhhhhhccchhc-----ccccHHHHHHHHHHHhccc
Confidence 34455544444456666445544 444432 245677776544443322 2234567788888887766
Q ss_pred HHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCH
Q 000049 1314 EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393 (2629)
Q Consensus 1314 ~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~ 1393 (2629)
.-.-.++.-.++-++ .+....+.++.++.--.+.....+.++-+.+++.++-+... +.-+.+++++.++ |+
T Consensus 463 AvsGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe------~Ad~lI~el~~dk-dp 533 (929)
T KOG2062|consen 463 AVSGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE------DADPLIKELLRDK-DP 533 (929)
T ss_pred hhhhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh------hhHHHHHHHhcCC-ch
Confidence 555555555555443 34445677777776654444456778888888877755432 2334677778877 89
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc-CCh
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-KAW 1472 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w 1472 (2629)
.-|.++++.++.-..+-|+ ..-+..+++. ..+|.+.+||.+|..+++.+.-.- ...+|..++.|.+ -+.
T Consensus 534 ilR~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 534 ILRYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNP 603 (929)
T ss_pred hhhhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcCh
Confidence 9999999877766655553 1223333332 478999999999999988774322 2345666666654 578
Q ss_pred hhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---chhHHhHHHHHHhccCCC
Q 000049 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDP 1549 (2629)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~ 1549 (2629)
.+|.++..+||-.+.+... ..-+..|-.+..|+..-||..|+-++.-+.-... +|.+..+...+.+.+.|.
T Consensus 604 HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 9999999999876644322 2233444556789999999999988886653322 466677777777777666
Q ss_pred Ch
Q 000049 1550 ND 1551 (2629)
Q Consensus 1550 ~~ 1551 (2629)
++
T Consensus 678 hE 679 (929)
T KOG2062|consen 678 HE 679 (929)
T ss_pred hh
Confidence 54
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.02 Score=69.76 Aligned_cols=489 Identities=14% Similarity=0.111 Sum_probs=242.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhc----hhhhHHHH---------HhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000049 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPA---------VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~----~i~~llp~---------l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~ 1817 (2629)
..||..|+..+....+.++.+ +...++|. +.-+++|.+.|.|.-+++....+++.- |.-+..
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls~ 84 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLSV 84 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHHH
Confidence 468888888877776655443 12223332 234678999999999999998887531 100000
Q ss_pred CC--CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhh-H-hhhHHHHHHHHHHH
Q 000049 1818 GS--DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-L-KEIMPVLMNTLISS 1893 (2629)
Q Consensus 1818 ~~--ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~-l-~~~l~~Ll~~L~~~ 1893 (2629)
.. .+..+.. ..-.+...+- ...+++-.. .-.+....+-...++++..++.++|-. + ..++-.++..+.+.
T Consensus 85 a~~~~~~~ftp--f~v~~a~si~--~~~r~l~~~--l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~ 158 (728)
T KOG4535|consen 85 AEDTSDHAFTP--FSVMIACSIR--ELHRCLLLA--LVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPY 158 (728)
T ss_pred HhccCCcCCCc--hHHHHHHHHH--HHHHHHHHH--HHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 00 0111100 0000110000 000111111 123455667788899999999998843 2 23566777888888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhcc---------------c-hhh-----hHHHHH------h-----------------
Q 000049 1894 LASSSSERRQVAGRALGELVRKLGE---------------R-VLP-----SIIPIL------S----------------- 1929 (2629)
Q Consensus 1894 L~~~~~~~R~~A~~~L~~lv~~~~~---------------~-~l~-----~llp~L------~----------------- 1929 (2629)
+.++++.+|..+...++.++..... + ..+ .-...+ .
T Consensus 159 i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i 238 (728)
T KOG4535|consen 159 IRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLI 238 (728)
T ss_pred hhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCccee
Confidence 8999999999999999888753210 0 000 000000 0
Q ss_pred ---------------------hhcCC--CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHH
Q 000049 1930 ---------------------RGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986 (2629)
Q Consensus 1930 ---------------------~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~ 1986 (2629)
+++.. .-..+|..+.+.|..+....+ ....|..++...+...+.+.++.+...++
T Consensus 239 ~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~a 316 (728)
T KOG4535|consen 239 RLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHGA 316 (728)
T ss_pred eeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHHH
Confidence 00000 001244444444443333222 22345566667777788899999999998
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhc--cCcCcccchhhhcCCCchhHHHHHHHHHHHh
Q 000049 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT--TAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2629)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~--~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~ 2064 (2629)
.++..+....+.+ +.|. ...++.-...+..++..++ ........+.+ ......++..+....
T Consensus 317 ~ll~~lg~~lv~~----~~P~-------~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl-----~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 317 KLLEELGTGLIQQ----YKPD-------STKAPDQRAPFWTMMLNGPLPRALYDSEHPTL-----QASACDALSSILPEA 380 (728)
T ss_pred HHHHHHHHHHhhh----cCCC-------cccchhhhccHHHHHccCCChhhhhhhcCCCc-----hhHHHHHHhhcCchh
Confidence 8887766544421 1110 0000000011222221100 00111111111 111223333333222
Q ss_pred CCChhhhHhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000049 2065 GPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2629)
Q Consensus 2065 g~~l~~~l~~il~~Ll~~L~~-~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l 2139 (2629)
-..|..--.+..+.......| ++.-++..+..+....+.+-+. ..+......++..+.|..-.+|.-+++.+|++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 122222223455555555543 3344666666666544443221 22344455566666777778899999999988
Q ss_pred HHhc----hh---hhhhhHHHHHHHHHHHhc---CCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhh
Q 000049 2140 YKNS----KL---YLVDEAPNMISTLIVLLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2629)
Q Consensus 2140 ~~~~----~~---~~~~~~~~il~~Ll~ll~---d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 2209 (2629)
.... +. .-.......+..++.... -....|+.++.++|+++..-+.. +.+.....+ .+...
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-----i~~~~~~e~---~~~~~- 531 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-----IEKPTFAEI---IEESI- 531 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-----hhhccHHHH---HHHHH-
Confidence 5432 21 112233444555554432 22457999999999988643321 111000000 00000
Q ss_pred hhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCh-hhhhhchhhhhHHHHHHhcCCCCHhH
Q 000049 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQV 2288 (2629)
Q Consensus 2210 ~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~-~~l~p~v~~i~~~Li~~l~~~~~~~v 2288 (2629)
.+++. + ....+...+|-+++.++|.+.++-.- -.-.++.+..++.|...+.+..+-.+
T Consensus 532 -~~l~~------~--------------v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 532 -QALIS------T--------------VLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred -Hhccc------c--------------eecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 00000 0 01123457889999999999976220 11134556666666666666555666
Q ss_pred HHHHHHHHHH
Q 000049 2289 KSAILSTLSI 2298 (2629)
Q Consensus 2289 k~~al~~L~~ 2298 (2629)
|..|..+|..
T Consensus 591 Ri~AA~aL~v 600 (728)
T KOG4535|consen 591 RIRAAAALSV 600 (728)
T ss_pred eehhhhhhcC
Confidence 6666666553
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.13 Score=68.58 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=115.5
Q ss_pred cchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000049 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2629)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2629)
....+.|++.+++++.+..+|..-..+|+-++.++|.+.+.|.++.+.+-|++.++-. +..+|...+.++..++...+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccc
Confidence 3456899999999977788899999999999999998899999999999999999864 778999999999999998888
Q ss_pred CccCchHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHhcc--CCh----hHHHHHHHHhhhcCCHHHHHHHH
Q 000049 2306 ALKPFLPQLQTTFIKCLQDST---RTVRSSAALALGKLSALS--TRV----DPLVGDLLSSLQVSDAGIREAIL 2370 (2629)
Q Consensus 2306 ~l~p~lp~L~~~~~k~L~d~~---~~vR~~Aa~aLg~l~~~~--~~~----~~ll~~Ll~~l~~~d~~vr~~~l 2370 (2629)
-...++..+.+.++..-.|++ -.||..|.+||+.+.+.. +++ +..+..|...+.++..-||..+.
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 888888999999888766653 789999999999997632 233 44444455555555455565444
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.18 Score=69.01 Aligned_cols=636 Identities=16% Similarity=0.189 Sum_probs=307.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhh
Q 000049 1888 NTLISSLASSSSERRQVAGRALGELVRKLGE--R-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2629)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~--~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2629)
..++..+.+.++..|....+.++.++...-. . +...++..+.+.+.|-++-+|..+......+......
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-- 392 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-- 392 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC--
Confidence 3444567788888999998888887754311 1 2234788888888999999999999988887765432
Q ss_pred HHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh----------hhhhHHHHHHhccCcCc------hhHHH
Q 000049 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA----------IDEIVPTLLHALEDDQT------SDTAL 2022 (2629)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~----------~~~ilp~Ll~~L~~~~~------~~~aL 2022 (2629)
.......++......+.|.+.-||.+|++.+..+....+-.. .++.+..+-+.+.+... ...-.
T Consensus 393 p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s 472 (1251)
T KOG0414|consen 393 PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRS 472 (1251)
T ss_pred CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhh
Confidence 123446677777788899999999999998888776544211 12222222212211100 00000
Q ss_pred HHHHHHHh-h------hcc------CcCc---ccchhhhcCCCchhHHHHHHH--HHHH--hCCChhhhHhhhHHHHHHh
Q 000049 2023 DGLKQILS-V------RTT------AVLP---HILPKLVHLPLSAFNAHALGA--LAEV--AGPGLNFHLGTILPALLSA 2082 (2629)
Q Consensus 2023 ~~L~~il~-~------~~~------~ilp---~Lip~L~~~~~~~~~~~aL~~--La~~--~g~~l~~~l~~il~~Ll~~ 2082 (2629)
...+.++. . ... .-.+ .+-....+.|. ....+.. +... -+-+|...+...+|.+.+.
T Consensus 473 ~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~~~~~~s~~~---~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~l 549 (1251)
T KOG0414|consen 473 ENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLLENEVESVPA---ENEIMQLKALVQFLEDAISFSDEMSEAIPIISQL 549 (1251)
T ss_pred hhcccceeechhhhhhhccccccccccchhhhhhhhhhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 000 0000 00000011110 0001111 0000 1334666677888888888
Q ss_pred cCCCC-HHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhch-hhhhhhHHHHHHHHHH
Q 000049 2083 MGDDD-MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIV 2160 (2629)
Q Consensus 2083 L~~~~-~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~-~~~~~~~~~il~~Ll~ 2160 (2629)
+...+ .+|.+. +..+. .+..++-++....+..++..+=..+..+|.+...+...++-..+ ..-......+.+.|+.
T Consensus 550 l~s~t~teV~E~-Idfl~-~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~ 627 (1251)
T KOG0414|consen 550 LFSKTTTEVKEA-IDFLV-RCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSK 627 (1251)
T ss_pred HhcCChHHHHHH-HHHHH-HHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH
Confidence 85554 444433 22222 12234444444445555444444455578877777777754432 1211112456666666
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCcccccc-hHHHHHHHH--hhhhhhhhhhhcCCcccccCCC---CcccchhhHHHH
Q 000049 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAI--STSRDKERRKKKGGPILIPGFC---LPKALQPLLPIF 2234 (2629)
Q Consensus 2161 ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~-l~~~l~~~l--~~~~~~~~~~~~~~~~~l~g~~---l~k~l~~ilp~l 2234 (2629)
++.|....-+.+--+.+..+.. +.++.. .+..+-+.. +..+. ...+..+.. .+-|.. .|.-+..-+..+
T Consensus 628 l~~~~s~~d~~slE~vl~~lv~---~~~Id~~Vi~~Lw~~ftlq~~~~-~~~q~~~sl-~iL~M~s~s~~~Iv~~~~~~l 702 (1251)
T KOG0414|consen 628 LLIDASIGDLTSLEEVLCELVA---RGYIDAAVINKLWEIFTLQKKGT-TNEQSRGSL-IILGMASRSKPSIVLANLDLL 702 (1251)
T ss_pred HHhcccccchhhHHHHHHHHHh---CCCccHHHHHHHHHHHHHHhccC-chhhhccce-eehhhhhccChhhhhhhhHHH
Confidence 6655433222222223333322 112111 111111111 10000 000001110 011110 011111111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcCh-hh--hhhc----hhhhhHHHHHHhcC---CCC--H-hHHHHHHHHHHHHHH
Q 000049 2235 LQGLISGSAELREQAALGLGELIEVTSE-QS--LKEF----VIPITGPLIRIIGD---RFP--W-QVKSAILSTLSIIIR 2301 (2629)
Q Consensus 2235 l~~L~~~~~~~r~~aa~~L~~l~~~~~~-~~--l~p~----v~~i~~~Li~~l~~---~~~--~-~vk~~al~~L~~L~~ 2301 (2629)
. .+.-|.+.....++..++.++..... .. -.++ -..+++.|-..+.. +.+ | .+...++.++..+..
T Consensus 703 v-~iglg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~ 781 (1251)
T KOG0414|consen 703 V-QIGLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM 781 (1251)
T ss_pred H-HhccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc
Confidence 1 11123455555555555555433221 00 0111 11122222222211 111 2 355556666555543
Q ss_pred hcCCCccCchHHHHHHHHHH------------cCCC--------CHHHHHHHHHHHHHHHhcc-CChhHHHHHHHH----
Q 000049 2302 KGGIALKPFLPQLQTTFIKC------------LQDS--------TRTVRSSAALALGKLSALS-TRVDPLVGDLLS---- 2356 (2629)
Q Consensus 2302 ~~~~~l~p~lp~L~~~~~k~------------L~d~--------~~~vR~~Aa~aLg~l~~~~-~~~~~ll~~Ll~---- 2356 (2629)
.|..+ ..++.+...+. ..|+ .+.+...-..+.|.++..+ -.++..++..+.
T Consensus 782 -~Pe~l---a~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~ 857 (1251)
T KOG0414|consen 782 -LPEVL---ATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKI 857 (1251)
T ss_pred -ChHHH---HHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 11222222111 1111 0112332445555542211 111222220000
Q ss_pred -----hhhcCC----------------------HHHHHHHHHHHHHHHhh---cCCCcChHHHHHHHHHHHHhhcC----
Q 000049 2357 -----SLQVSD----------------------AGIREAILTALKGVLKH---AGKSVSSAVKIRVYSVLKDLVYH---- 2402 (2629)
Q Consensus 2357 -----~l~~~d----------------------~~vr~~~l~AL~~vi~~---~g~~~~~~~~~~i~~~L~~~l~~---- 2402 (2629)
.-++.+ ...-....+++..+... .|. ......+.+++.+.+..
T Consensus 858 ~~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~e~c~n~~~~ 934 (1251)
T KOG0414|consen 858 KTELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVVEGCRNPGLF 934 (1251)
T ss_pred HHHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHhcCCCcC
Confidence 000100 00012344555555443 121 34567777777777754
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc-CCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhh
Q 000049 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA-SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481 (2629)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~ 2481 (2629)
.++..+.+|.-+||++.-... .-...-++-+.+.. .+++...|..++.+++.+....|.. .+...+.+...+
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa-~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl------ie~~T~~Ly~rL 1007 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL------IEPWTEHLYRRL 1007 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc------cchhhHHHHHHh
Confidence 578999999999999875432 22222333332222 3555556777777887776666653 467788999999
Q ss_pred cCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHH
Q 000049 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALF 2558 (2629)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l 2558 (2629)
.|.++.+|++|+..+..++.... ......++.+..++.|++..+|..|-.-.+-++++. +.+-..|+.+
T Consensus 1008 ~D~~~~vRkta~lvlshLILndm-------iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdi 1076 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLILNDM-------IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDI 1076 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHHhhh-------hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHH
Confidence 99999999999999999988764 234567888999999999999999998888888765 5554444433
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.056 Score=69.23 Aligned_cols=455 Identities=18% Similarity=0.178 Sum_probs=242.9
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhH
Q 000049 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL-GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2629)
Q Consensus 1881 ~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~-~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l 1959 (2629)
+.+..+...+.+-+.++++..-..|..|++.+-..- .+.+.+.+-.+|.. .+...-+|+.++.++-.+.... ++.+
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~s-pDl~ 183 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKS-PDLV 183 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcC-cccc
Confidence 445555666666677888888888888887654321 22233333333332 1334568888888888777663 2322
Q ss_pred HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcc
Q 000049 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2629)
Q Consensus 1960 ~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~ 2039 (2629)
.+ ..-...+...|.|.+-.|-.++...+..+.....+... ..+| -++..|..++...+.....+
T Consensus 184 ~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-~~~~-------------~avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 184 NP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-TCLP-------------LAVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred Ch--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-hhHH-------------HHHHHHHHHHhhcccchhhc
Confidence 11 23345566788898888888887777777665443221 1222 23333334443222221222
Q ss_pred cchhhhcCCCchhHHHHHHHHHHHh---CCChhhhHhhhHHHHHHhcCCC--CHHHHH-----H-HHHHHHHHHhhccc-
Q 000049 2040 ILPKLVHLPLSAFNAHALGALAEVA---GPGLNFHLGTILPALLSAMGDD--DMDVQS-----L-AKEAAETVTLVIDE- 2107 (2629)
Q Consensus 2040 Lip~L~~~~~~~~~~~aL~~La~~~---g~~l~~~l~~il~~Ll~~L~~~--~~~vr~-----~-a~~al~~l~~~~~~- 2107 (2629)
.....-.|.. ...++..|.-.- ...-...+..++..++....++ ...++. + ..+++. ++..++.
T Consensus 248 Tyy~vP~PWL---~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e 323 (938)
T KOG1077|consen 248 TYYFVPAPWL---QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSE 323 (938)
T ss_pred eeecCCChHH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHH-HHHHcCCc
Confidence 1111111111 122222221110 1112223444455555544321 112221 1 122332 2223343
Q ss_pred -ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcC
Q 000049 2108 -EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVP 2185 (2629)
Q Consensus 2108 -~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~~~ 2185 (2629)
+-+...+..|.+.+.+.....|..+++.+..++.... -.+.+..-...++..+. +.|..+|..|.+.|-.++...
T Consensus 324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~- 400 (938)
T KOG1077|consen 324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS- 400 (938)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh-
Confidence 3367778888888888888999999888888875421 11122223556677777 888889988888877776421
Q ss_pred cccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhh
Q 000049 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 2265 (2629)
Q Consensus 2186 ~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l 2265 (2629)
....|+.-+++.|.+.+...|+....-++-+++... ..+
T Consensus 401 ----------------------------------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA-tDy 439 (938)
T KOG1077|consen 401 ----------------------------------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA-TDY 439 (938)
T ss_pred ----------------------------------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCc
Confidence 223345556666777777888887777777776653 344
Q ss_pred hhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHH--
Q 000049 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLS-- 2341 (2629)
Q Consensus 2266 ~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l~-- 2341 (2629)
.=|+..+ --|+|+.++..++++=.-.++.+. -...+.+| -..++...|+.+ ++.+-..++..||.+.
T Consensus 440 ~WyVdvi-LqLiriagd~vsdeVW~RvvQiVv-----Nnedlq~y---aak~~fe~Lq~~a~hE~mVKvggyiLGEfg~L 510 (938)
T KOG1077|consen 440 SWYVDVI-LQLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGY---AAKRLFEYLQKPACHENMVKVGGYILGEFGNL 510 (938)
T ss_pred chhHHHH-HHHHHHhcccccHHHHHHhheeEe-----cchhhhHH---HHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhh
Confidence 4455443 457787776544444222211110 01111111 122334445554 6777777888888773
Q ss_pred -hccCChhH--HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000049 2342 -ALSTRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2629)
Q Consensus 2342 -~~~~~~~~--ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2629)
.-+|+..+ .+.-+.+.+....+..|...+..+-.++... ++....|+.++....+.-|.+++.-+.+-|.
T Consensus 511 Ia~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 511 IADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred hcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 33455443 3444555555556666766666666665432 4556677777666655567777766666554
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00075 Score=91.53 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=171.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
..+-+-+...+.+..+..|..|++.+..++..-+ ....+-...+...++.+.....+-.+...++.+|..++.+++..+
T Consensus 252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 3466778888889999999999999999987655 234444456667777776654577788899999999999999999
Q ss_pred cCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC-CCcCh
Q 000049 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG-KSVSS 2386 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g-~~~~~ 2386 (2629)
++|.-.+.+.|+.++.+....+|..+..++-.+.. ...++.+.+.++..++...++.+......+...+...+ .....
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 99999999999999999999999999999888766 45678899999999999999999999999999998887 44445
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000049 2387 AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2629)
Q Consensus 2387 ~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2629)
.....+...+..+..|.+..||.++.++++.+.+.++++.+..++..+
T Consensus 410 ~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 677888888888999999999999999999999999987766666644
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.39 Score=65.95 Aligned_cols=181 Identities=18% Similarity=0.281 Sum_probs=125.0
Q ss_pred chhhHHHHHHHHhc----CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh
Q 000049 2227 LQPLLPIFLQGLIS----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302 (2629)
Q Consensus 2227 l~~ilp~ll~~L~~----~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~ 2302 (2629)
+..+.|++.++..+ ++|+.+.+|..+++++.-... .-... -.+-|+.++....++-+|..+.-++|.+.-+
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa-~fces----~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA-EFCES----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH-HHHHH----HHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 34477888888844 579999999999999874332 22222 3445678887666788999999999999999
Q ss_pred cCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc-CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2629)
Q Consensus 2303 ~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~-~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2629)
.|..+.||.+ .+...|.|++..||..|...|.+|+--. =++..+++++.-.+.+++.+++.-+=...+++-.+.
T Consensus 992 fpnlie~~T~----~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~- 1066 (1251)
T KOG0414|consen 992 FPNLIEPWTE----HLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG- 1066 (1251)
T ss_pred cccccchhhH----HHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-
Confidence 8887777655 4566889999999999999999985421 245678899999999999999888877777777654
Q ss_pred CCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000049 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2629)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2629)
..+ -...+.|+.-|.+. .=..+..+...-..||.+-
T Consensus 1067 n~i-ynlLPdil~~Ls~~-~l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1067 NTI-YNLLPDILSRLSNG-NLEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred cch-hhhchHHHHhhccC-cccchhhHHHHHHHHHHhc
Confidence 221 22334444333322 1123444444444444443
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.001 Score=81.32 Aligned_cols=198 Identities=19% Similarity=0.158 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~ 1412 (2629)
...++..++..+.+++....|.+|...|-.+...-+-.... ...++..+.+.+.+..+...|..|+..++.+++.=+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 45677777777777666788899988887766533322222 1256667777887755888899999999999988777
Q ss_pred CchhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc-
Q 000049 1413 LFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2629)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p- 1490 (2629)
.|.++....+..++..-.|.++ .+|.++.+|+..+.+.++-..+..+-|.++. .+...-..++..+..+.+..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 7889999899999999998876 5566667778888878777788877777666 233333345557777776654
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
+.+...++++.|.+++..+.+...||+.|+.||-.+...++-.++.
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~me 485 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEME 485 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence 4577788999999999999999999999999999999888844443
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.34 Score=64.15 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhhc-CCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000049 2470 FLSILDRLKSSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2629)
Q Consensus 2470 ~~~i~~~l~~~~~-~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~ 2548 (2629)
....++.+.+.+. ++...+|.|.+.|||++..+-. .-....+|.+...|.|++.-|||.++..|..+-++..
T Consensus 966 aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-------am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 966 AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-------AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-------HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 3446666666654 4567899999999999876642 2356677888888999999999999999988887432
Q ss_pred hhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccCchhHHHHHHHh
Q 000049 2549 SAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601 (2629)
Q Consensus 2549 ~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l 2601 (2629)
--++- ..++-.+. .+-|.+..|+..|+-++.++|+..+..-.++.|-++|
T Consensus 1039 vKw~G--~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1039 VKWNG--ELFIRFML-ALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred hhcch--hhHHHHHH-HHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 11111 11223323 3457888899999999999999999888888888887
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0012 Score=83.40 Aligned_cols=226 Identities=20% Similarity=0.198 Sum_probs=145.9
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh---------hc
Q 000049 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA---------TT 1771 (2629)
Q Consensus 1701 l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~---------~~ 1771 (2629)
+...+.+.+..||..++..+-.+.. |..+ -..+.....+.++|++++||.+|++.+...-+.++ .+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 3344556778888888888777766 3211 12355667778889999999999887766555441 12
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHh------------h-c------------------C--CCccccccC-
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK------------V-A------------------G--TSGKALLEG- 1817 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~------------~-~------------------~--~~~k~~~~~- 1817 (2629)
..+..+..+-..+.|..|.+|..+.+++|.+=.. . + | .+||.+..+
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 3455666777888899999999998888875210 0 0 0 011111000
Q ss_pred CCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCC
Q 000049 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2629)
Q Consensus 1818 ~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~ 1897 (2629)
.++++++.. ..++.. | -..++.-++.|.-.+||.+|+..++.++.+.|.. -...+..|+..++|.
T Consensus 358 psee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 358 PSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDE 422 (823)
T ss_pred chhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccH
Confidence 001101000 001110 0 0112223467888899999999999999887752 345567788889999
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 000049 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~ 1948 (2629)
...+|..|..+|..+.... .+-...++.+...+.|.++++|.+.-.-|+
T Consensus 423 ~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999988763 344566777788888999999988665554
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0026 Score=81.45 Aligned_cols=145 Identities=16% Similarity=0.033 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
+.+...++|.++.+|..+..+++.+... ..++.|...+.|.++.||..|+.+++.+.. +..
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~~------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------~~A 210 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPRR------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-------RLA 210 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccc------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------HhH
Confidence 3455566778889999999999887542 245667777999999999999999876532 222
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~i 1738 (2629)
.+.+.......... .+......++ ..|.. ..++.+...++++. +|..++.+++.+.. +..
T Consensus 211 ~~~l~~~~~~~g~~-~~~~l~~~la----l~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~a 270 (410)
T TIGR02270 211 WGVCRRFQVLEGGP-HRQRLLVLLA----VAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGD----------VEA 270 (410)
T ss_pred HHHHHHHHhccCcc-HHHHHHHHHH----hCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cch
Confidence 33333322222222 2222221111 11322 45556666666543 89999988886543 347
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHH
Q 000049 1739 LPAILDGLADENESVRDAALGAGHVL 1764 (2629)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~i 1764 (2629)
++.++..+.|+. ++..|-+++..|
T Consensus 271 v~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 271 APWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 788888887754 887777777665
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.033 Score=75.51 Aligned_cols=371 Identities=15% Similarity=0.157 Sum_probs=203.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH
Q 000049 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK 1457 (2629)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~ 1457 (2629)
..+..+++.+ +...| .++..+..+++...-...-.-..+++.+..++...+..+.-.+...++.+.-.-... .-.
T Consensus 253 kk~~~l~~kQ-eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHH-HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444455443 44445 556667777765432111122368888899998888888777777777664321111 125
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-h--
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E-- 1534 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~-- 1534 (2629)
.++|.+...+.+++-.....++.+|.++++...-...-.-.+++|.+..++.|++ .+..|...|.+++..-... .
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 6899999999988888899999999999875322211112568899999998754 5566788888877532222 1
Q ss_pred HHhHHHHHHhccC-CCChhHH-HHHHHHHhccccccCCh-hhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC
Q 000049 1535 IASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDA-PSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2629)
Q Consensus 1535 i~~lvp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~-~~l-~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2629)
....+|.+.+.+. .++..+. +.+..+........... -.- ..+-..+.+.++.+++ .....+.|++..-+..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPL 484 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchH
Confidence 1456777777653 3444443 22222221000000000 000 1112222333333332 2345666776542111
Q ss_pred -CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----Cc--hhhHHHHHHHhccCCC-hHHHHHHHHH
Q 000049 1611 -KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNS-NVERSGAAQG 1681 (2629)
Q Consensus 1611 -~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~-----~~--~~ll~~Ll~~L~~~~~-~~~R~~a~~~ 1681 (2629)
..+.+|+..++ ..+...+. ......|+|.++.-.-++ .+ ..++|++.+.|..... +.....+...
T Consensus 485 k~~f~~~i~~L~----~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 485 KELFVDFIGDLA----KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHH----HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 12334433333 33443322 256777777777643222 12 3688999988875533 2244455555
Q ss_pred HHHHHHhhChhH-H--HhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhH--HhHHHHHHhhcCCCChhHH
Q 000049 1682 LSEVLAALGTVY-F--EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVR 1754 (2629)
Q Consensus 1682 L~~i~~~~g~~~-l--~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR 1754 (2629)
+|.++..-.... + ..+++.++..++.. +.+.--..+.+|..+... +......+ .++...++..+.|.+..||
T Consensus 559 ~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir 637 (708)
T PF05804_consen 559 LGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIR 637 (708)
T ss_pred HHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHH
Confidence 666554221111 1 35667777766543 445444555556555543 22212122 3477788889999999999
Q ss_pred HHHHHHHHHHHH
Q 000049 1755 DAALGAGHVLVE 1766 (2629)
Q Consensus 1755 ~~al~al~~iv~ 1766 (2629)
..+-.++..+.+
T Consensus 638 ~~~d~~Ldii~e 649 (708)
T PF05804_consen 638 KVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHH
Confidence 998888776654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0039 Score=79.85 Aligned_cols=209 Identities=17% Similarity=0.069 Sum_probs=128.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhh
Q 000049 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2629)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2629)
++.+.+.+.+. +..+|.++..+|+.+- -....+.+...++++++.||.++..++...- ..-
T Consensus 88 ~~~L~~~L~d~-~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~ 148 (410)
T TIGR02270 88 LRSVLAVLQAG-PEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDP 148 (410)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cCh
Confidence 45566666655 5666776666555422 1244555666667777777776665544421 112
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHH
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2629)
.+.+...|.+.+..++..++.+||.+.. ...+|.|...+.|.++.||.+|..++..++. + .-+
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~ 211 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAW 211 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHH
Confidence 3455556667777777777777776643 3455667778999999999999999988864 2 112
Q ss_pred HHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhh
Q 000049 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2629)
Q Consensus 1540 p~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2629)
+.+.....++....+..+...... . . -...++.|...+++. .+|..+..++|.+. ++ .
T Consensus 212 ~~l~~~~~~~g~~~~~~l~~~lal--~---~---~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg----~p--------~ 269 (410)
T TIGR02270 212 GVCRRFQVLEGGPHRQRLLVLLAV--A---G---GPDAQAWLRELLQAA--ATRREALRAVGLVG----DV--------E 269 (410)
T ss_pred HHHHHHHhccCccHHHHHHHHHHh--C---C---chhHHHHHHHHhcCh--hhHHHHHHHHHHcC----Cc--------c
Confidence 333333334433333222211110 0 1 114566677777765 38999999988763 32 3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
.++.|...+.|+. +|..|..++..+..
T Consensus 270 av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 270 AAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 6777788887753 99999999988765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00086 Score=84.47 Aligned_cols=279 Identities=21% Similarity=0.170 Sum_probs=166.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC-CCc----ChHHHHHH
Q 000049 2318 FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG-KSV----SSAVKIRV 2392 (2629)
Q Consensus 2318 ~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g-~~~----~~~~~~~i 2392 (2629)
+....+|.+..||..|+.+|-.|...-.--.......++.+.+.+..||.++++.+.-.-.... +.. .....+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 3445566788999999999877744212224567778888888889999999888876655542 211 13567788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHH-HHhhcCCCCchhhHhHHHHHHHHH---------hhCCc
Q 000049 2393 YSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE-LLNLASSPSWAARHGSVLVFATFL---------RHNPS 2462 (2629)
Q Consensus 2393 ~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~-ll~~~~~~~~~~~~~~~~~l~~~l---------~~~p~ 2462 (2629)
+.-+...+.|.+..+|..|++.||.+..... +-+.+.+.+ ++..+ .-|...+-.-..+.+-. .+.|.
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKlms~l--RRkr~ahkrpk~l~s~GewSsGk~~~advps 359 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKLMSRL--RRKRTAHKRPKALYSSGEWSSGKEWNADVPS 359 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHHhhhh--hhhhhcccchHHHHhcCCcccCccccccCch
Confidence 8888889999999999999999999876443 333333332 22200 00000000011111111 01111
Q ss_pred cccCCh----hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 000049 2463 AISMSP----LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS 2538 (2629)
Q Consensus 2463 ~~~~~~----~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~ 2538 (2629)
...+.. ........++.++.|+-.++|.+|+.+++.+... .|+ .....+.-++-.+||+..+||..|..
T Consensus 360 ee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s----sP~---FA~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 360 EEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS----SPG---FAVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred hhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC----CCC---cHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 110000 0001234455566666678999999999998765 353 45566777777788999999999999
Q ss_pred HHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccCchhHHHHHHHhhhhhhhhhccCCCCCC
Q 000049 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSD 2617 (2629)
Q Consensus 2539 ~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 2617 (2629)
++..++.+ - .++ .+-++.+.+++.|.+..||.+.- =++...++.+ +++-+++..-....|.+.|.+.|
T Consensus 433 aL~~Is~~-l-~i~---eeql~~il~~L~D~s~dvRe~l~-elL~~~~~~d-----~~~i~m~v~~lL~~L~kyPqDrd 500 (823)
T KOG2259|consen 433 ALTMISVH-L-AIR---EEQLRQILESLEDRSVDVREALR-ELLKNARVSD-----LECIDMCVAHLLKNLGKYPQDRD 500 (823)
T ss_pred HHHHHHHH-h-eec---HHHHHHHHHHHHhcCHHHHHHHH-HHHHhcCCCc-----HHHHHHHHHHHHHHhhhCCCCcH
Confidence 99999986 1 122 34466677777777777775543 2222233322 23444443334455555555544
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0035 Score=80.44 Aligned_cols=216 Identities=25% Similarity=0.301 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
.++.+...+.+. ++.+|..|..+++.+.. ...+|.++..+. |++..||..+..++..+.. .
T Consensus 75 av~~l~~~l~d~-~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------~ 136 (335)
T COG1413 75 AVPLLRELLSDE-DPRVRDAAADALGELGD----------PEAVPPLVELLENDENEGVRAAAARALGKLGD-------E 136 (335)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------h
Confidence 444455555544 45555555553333211 123344444444 5566666665555555422 1
Q ss_pred hhHHHHHhhhccC------------ChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000049 1458 LVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~------------~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2629)
..++.+++.+.+. .|..|..+...++.+.. +...+.+.+.+.|....||.+|..+|+.
T Consensus 137 ~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~ 206 (335)
T COG1413 137 RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQ 206 (335)
T ss_pred hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHH
Confidence 2233333333332 24667777777776643 4456777888999999999999999999
Q ss_pred HhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000049 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2629)
Q Consensus 1526 l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~ 1604 (2629)
++... ..+.+.+...+.+++..+| .++..++.. ......+.+..++.+.++.++..+....+..
T Consensus 207 ~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~---------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~- 271 (335)
T COG1413 207 LGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI---------GDEEAVDALAKALEDEDVILALLAAAALGAL- 271 (335)
T ss_pred hhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc---------CcchhHHHHHHHHhccchHHHHHHHHHhccc-
Confidence 87542 3455677777778777776 455554321 1223445566666666666665555444411
Q ss_pred hhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
. .......+...+.|..+.+|..+...++....
T Consensus 272 ---~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 272 ---D--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred ---C--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 0 11123444555666677777777777766544
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.006 Score=78.30 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=136.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
..++.++..+.|++..||..+...++.+ +-+..+|.+...+.+.++.+|..+..+||.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4677788889999999999887775544 557889999999999999999999998887642 45
Q ss_pred hHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCC------------hhHH-HHHHHHHhccc
Q 000049 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2629)
Q Consensus 1500 ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~------------~~~r-~al~~L~~~~~ 1565 (2629)
-+|.+.+++. |.+..||..|..+|+.+...-. ++.++..+.++. ..+| .+...++..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a-------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDERA-------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh-------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5677777777 7999999999999999875321 344445555443 1233 233333210
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
......+.+.+.+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..+..++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234566677777777788888887777765421 2356677777788888888888777765
Q ss_pred HHhhhCCCCchhhHHHHHHHhccCC
Q 000049 1646 LIRGMGEENFPDLVSWLLDALKSDN 1670 (2629)
Q Consensus 1646 l~~~~g~~~~~~ll~~Ll~~L~~~~ 1670 (2629)
+.. ....+.+...+.+..
T Consensus 240 ~~~-------~~~~~~l~~~l~~~~ 257 (335)
T COG1413 240 IGD-------EEAVDALAKALEDED 257 (335)
T ss_pred cCc-------chhHHHHHHHHhccc
Confidence 432 333444555555443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.41 Score=64.69 Aligned_cols=104 Identities=21% Similarity=0.296 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh
Q 000049 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2629)
++.+++.+++...+.+.+.|...---|-...+.-+ .-.-..++.+..-+.++++.+|..+...++.+ ...+.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el 124 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKEL 124 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHH
Confidence 56666666777777788777766555544443322 22223456677788999999999998888764 23456
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
++.+++.+++++.|+++.||..|+-|+..+++
T Consensus 125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999885
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.08 Score=69.19 Aligned_cols=282 Identities=18% Similarity=0.129 Sum_probs=161.7
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~ 2187 (2629)
.+..++.+-+-.++.+....+-..|+.++..+....+.++.| .+..|-.+++.+...+|-+|...|+.+....|..
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 345566777777788888888888888888776655555555 5667777788888889999999999998877653
Q ss_pred c------ccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2188 V------QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261 (2629)
Q Consensus 2188 ~------l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~ 2261 (2629)
. ++.++....+.+.+..-.... ..|. ...+..++..+.....+-+.+-+.....++..++...+
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLL-KTG~---------e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLL-KTGT---------ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHH-Hhcc---------hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc
Confidence 1 222222111111111000000 0000 01112222221111111233333334444444444443
Q ss_pred hhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 2262 EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2262 ~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~ 2341 (2629)
. -+ ..+...|.++|.+...-+-|.++.+++..++...+..=.+-+..|...+-.| +.+.-+..-|+.+.
T Consensus 387 ~--k~---~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG 455 (865)
T KOG1078|consen 387 R--KH---TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLG 455 (865)
T ss_pred H--HH---HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHh
Confidence 1 01 1122334444544445566777777777777655544334444444444333 22334444455553
Q ss_pred h---ccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000049 2342 A---LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM 2418 (2629)
Q Consensus 2342 ~---~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L 2418 (2629)
. ..+.-..|+..+.+.+--.+..+|.+++.||..+. ++. +...+.|..++..++.|+++.+|..|...+..+
T Consensus 456 ~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~---~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 456 KEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQD---VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred ccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCC---CCccccHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 3 23445678888887776667889999999998877 222 335678888899999999999999988887766
Q ss_pred H
Q 000049 2419 S 2419 (2629)
Q Consensus 2419 ~ 2419 (2629)
-
T Consensus 531 ~ 531 (865)
T KOG1078|consen 531 E 531 (865)
T ss_pred h
Confidence 5
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.047 Score=67.90 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=105.6
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc-hh
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER-VL 1921 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~-~l 1921 (2629)
.++..+.....|++..+|..|+..++..+...|...+.+.+.++..++..|-| .+.++...+..+|..+.++.... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 34444445568999999999999999999999999999999999999988875 45788888999998888776543 55
Q ss_pred hhHHHHHh---hhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHH---HHHHhcCCcHHHHHHH
Q 000049 1922 PSIIPILS---RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPT---IRTALCDSILEVRESA 1985 (2629)
Q Consensus 1922 ~~llp~L~---~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~---l~~~L~d~d~~VR~~A 1985 (2629)
++++++-. ....+.+++.|.++...+|.+....|+..-..|.+++... +.-.++|+++.|-.+.
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 66666543 4566889999999999999887777665433344444422 2346788888765443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.47 Score=64.20 Aligned_cols=166 Identities=18% Similarity=0.232 Sum_probs=117.5
Q ss_pred hccCChhhhHHHHH-HHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhc
Q 000049 1467 LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2629)
Q Consensus 1467 L~~~~w~~r~~a~~-~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~ 1545 (2629)
+.+++.+.|..|+. ++..|..+-. ++.++|.+++.....+.++++-.--=|..+++.-+ .+.--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 55556666666655 4456665432 45566666666666688999988888888887533 2335567888899
Q ss_pred cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhh-hHHH
Q 000049 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2629)
Q Consensus 1546 l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~-ll~~ 1623 (2629)
++||++.+| .|+..+.... ....+..+++.+.+.+.|+++.||+.|+.++..+.+. +. + -|.+. +...
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~-~---l~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DK-D---LYHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CH-h---hhhcccHHHH
Confidence 999999999 5777664311 2345567889999999999999999999999998875 21 1 12333 5666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1624 L~~~L~d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
+..++.|.+|.|-..|..++..+-..
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67778899999988888888776654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.8e-05 Score=68.14 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
|++|..++.+||.++...+..+.+++++++|.|..+++|+++.||.+|+.||+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
|
... |
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.23 Score=65.24 Aligned_cols=313 Identities=15% Similarity=0.140 Sum_probs=157.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHH
Q 000049 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2629)
Q Consensus 1383 L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~ 1462 (2629)
+.+..+++ |..-|...-.+++.++....+ +.-+...+..-+...++..|-.|..++..+.....-+++..++..
T Consensus 69 ~tKlfQsk-d~~LRr~vYl~Ikels~ised-----viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kq 142 (865)
T KOG1078|consen 69 ITKLFQSK-DVSLRRMVYLAIKELSKISED-----VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQ 142 (865)
T ss_pred HHHHHhhc-CHHHHHHHHHHHhhccccchh-----hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHh
Confidence 44445554 455555555555554432221 223334444444445566676666666665443333333333332
Q ss_pred HHhhhccCChhhhHHHHHHHHHHHh--hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHH
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2629)
. +-+....+.. ..++..+.. ...........++.+ ...+.+..||..|..-|.++-+..+ -.+..++.
T Consensus 143 a---ivd~~~avSs--aalvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalglLyqirk~dr-la~sklv~ 212 (865)
T KOG1078|consen 143 A---IVDKNPAVSS--AALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQ 212 (865)
T ss_pred H---eeccccccch--HHHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHH
Confidence 2 2222222211 122222221 122223322233322 2233355777777777766654211 11233333
Q ss_pred HHHh-ccCCCChh---HHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1541 TLLM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1541 ~Ll~-~l~d~~~~---~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
.+.. .+.+|-.. +|.+.+.+- . .......+.|.+...+.++...+-..++..+..+... .+.++.|
T Consensus 213 ~~~~~~~~~~~A~~~lir~~~~~l~------~-~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p- 282 (865)
T KOG1078|consen 213 KFTRGSLKSPLAVCMLIRIASELLK------E-NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP- 282 (865)
T ss_pred HHccccccchhHHHHHHHHHHHHhh------h-cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch-
Confidence 3332 12222111 121222111 1 1333456778888888888888888888888877654 2234444
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHh
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ 1696 (2629)
-+..+...+..+.+-+|-+|.+.|..++...+.... -.-..| +.+-++ ..|.-+..++..+.+....+..+.
T Consensus 283 ---avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~cN~el-E~lItd---~NrsIat~AITtLLKTG~e~sv~r 354 (865)
T KOG1078|consen 283 ---AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VCNLDL-ESLITD---SNRSIATLAITTLLKTGTESSVDR 354 (865)
T ss_pred ---HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-ccchhH-Hhhhcc---cccchhHHHHHHHHHhcchhHHHH
Confidence 566677778889999999999999999987654310 000111 111122 246666667777777655555566
Q ss_pred HhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc
Q 000049 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2629)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~ 1729 (2629)
++..+-....+-+.+.+.....++..++..++.
T Consensus 355 Lm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 355 LMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred HHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 665555555555555555555566666655554
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.11 Score=67.19 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=58.2
Q ss_pred CccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC-
Q 000049 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK- 1933 (2629)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~- 1933 (2629)
|.+..-|+.-++.++.++.++|. +-..+++.+++.+.|.++..-......+.+.+++++. ....++..+...+.
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETFPQ 444 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhhhh
Confidence 34455666677777777777764 4456667777888998888777777778888777653 22223333333222
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 000049 1934 DPSASRRQGVCIGLSEVMA 1952 (2629)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~ 1952 (2629)
-+...+-.++.+.+|+-+.
T Consensus 445 irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 445 IRSSKICRGALWILGEYCE 463 (948)
T ss_pred hcccccchhHHHHHHHHHh
Confidence 1345566677777776543
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00025 Score=77.64 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=89.9
Q ss_pred hhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHH
Q 000049 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFG 2559 (2629)
Q Consensus 2480 ~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~ 2559 (2629)
|..|++.++|++|..+++.++..+..+ ..+.+++..+..|+.| +.|+|.++..++..++..+|..+.++++.++
T Consensus 35 h~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~ 108 (169)
T PF08623_consen 35 HKVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLV 108 (169)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTH
T ss_pred eeecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 567888999999999999999987644 4588999999999999 9999999999999999999999999999999
Q ss_pred HHHHhhhcC--Ccchhhhh----------HHHHHHHH-hccccCchhHHHHHHHhh
Q 000049 2560 PALAECLKD--GSTPVRLA----------AERCAVHA-FQLTRGSEYIQGAQKFIT 2602 (2629)
Q Consensus 2560 p~l~~~~~~--~~~~vk~a----------ae~a~~~l-~~~~~~~~~~~~~~~~l~ 2602 (2629)
+++-+.+.. +...||+- +.|+..++ ..++..+...+.+.+|+.
T Consensus 109 ~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~ 164 (169)
T PF08623_consen 109 EPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVE 164 (169)
T ss_dssp HHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHH
T ss_pred HHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 999888643 33445544 44788888 677665554445666653
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.62 Score=60.31 Aligned_cols=351 Identities=15% Similarity=0.196 Sum_probs=190.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHH
Q 000049 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLL 1426 (2629)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~-~~~v~~ilp~ll 1426 (2629)
+++.+.++..+...+..++..- .+..+ .++..+++-+.+. |+.....|+.+++.+. ++.+ +.|..+ +|.++
T Consensus 84 ss~kysEKqIGYl~is~L~n~n-~dl~k--lvin~iknDL~sr-n~~fv~LAL~~I~niG---~re~~ea~~~D-I~KlL 155 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNEN-SDLMK--LVINSIKNDLSSR-NPTFVCLALHCIANIG---SREMAEAFADD-IPKLL 155 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcc-hHHHH--HHHHHHHhhhhcC-CcHHHHHHHHHHHhhc---cHhHHHHhhhh-hHHHH
Confidence 4556777766666666666432 11111 3444444444444 4555545555555443 3322 223223 23332
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1427 VAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
. -++..+.||+.+.-|+-.+....++-. .......++..|++.+.++..++..++..++...|+....+++.-+..+.
T Consensus 156 v-S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 156 V-SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLS 234 (938)
T ss_pred h-CCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHH
Confidence 2 267788999999988888887643321 13455666777888888888889999999998888887777766665555
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCC-hhHH----HHHHHHHhccccccCChhhhhhHHHH
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK----YSLDILLQTTFVNTVDAPSLALLVPI 1580 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~-~~~r----~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2629)
..........+... --.+++|+++--+=.++...-.|. ..+| ++++.+..
T Consensus 235 riv~~~~t~~qdYT-------yy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn------------------ 289 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYT-------YYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILN------------------ 289 (938)
T ss_pred HHHhhcccchhhce-------eecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh------------------
Confidence 44321111111000 001223333211111112111111 1111 22222211
Q ss_pred HHHhhcC----CCH---HHHH-HHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1581 VHRGLRE----RSA---ETKK-KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1581 L~~~L~d----~~~---~vr~-~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
..++ ++. ..+. ...+++.-... ++.. ...+...+..|-+.+.+....+|--|.+.+..++..-..
T Consensus 290 ---k~~~~~~~k~vq~~na~naVLFeaI~l~~h-~D~e---~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s 362 (938)
T KOG1077|consen 290 ---KAQEPPKSKKVQHSNAKNAVLFEAISLAIH-LDSE---PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS 362 (938)
T ss_pred ---ccccCccccchHhhhhHHHHHHHHHHHHHH-cCCc---HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch
Confidence 1110 000 1111 11222322222 2211 123455666677777788889999999888888775110
Q ss_pred -CCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch
Q 000049 1653 -ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1653 -~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f 1731 (2629)
+....-...++..|+.+.+..+|+.+..-|=.+|.. +..+.++..+++.+...+..+|+....=..-+++.+..++
T Consensus 363 ~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy 439 (938)
T KOG1077|consen 363 IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY 439 (938)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc
Confidence 112223455666777666667888877766666543 3345677778888888899999988877778888777777
Q ss_pred HhhHHhHHHHH
Q 000049 1732 QNYLQQVLPAI 1742 (2629)
Q Consensus 1732 ~p~l~~ii~~l 1742 (2629)
.=|+.-++..+
T Consensus 440 ~WyVdviLqLi 450 (938)
T KOG1077|consen 440 SWYVDVILQLI 450 (938)
T ss_pred chhHHHHHHHH
Confidence 66665555443
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.49 E-value=2.2 Score=65.17 Aligned_cols=391 Identities=19% Similarity=0.245 Sum_probs=196.8
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc---
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER--- 1919 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~--- 1919 (2629)
.++..+.....|....+-.++..+.+.++...+.....+...+++.+.+.+.+ .+...|.++..+++.+....|-.
T Consensus 648 ~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p 727 (2341)
T KOG0891|consen 648 PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDP 727 (2341)
T ss_pred chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecc
Confidence 34444555567777888899999999999987765655555666666666553 45677889999999988766533
Q ss_pred --hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Q 000049 1920 --VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS 1995 (2629)
Q Consensus 1920 --~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~ 1995 (2629)
..|.++..+...+.. ....+|..+...++.. |..+...+.........+..... .... ....+...
T Consensus 728 ~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~----g~~d~~~~~~~~~~~~~~~~~~~~k~~~------~~~~~~~~ 797 (2341)
T KOG0891|consen 728 YLDYPELLDILINILKTEQSSTIRREAIRLLGLL----GALDPYKHKVTEGTSASKISSEQIKSDI------DISLLESG 797 (2341)
T ss_pred cccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh----cccchhHHHHHhhhhhHhhhhccccccc------hHHHHHhh
Confidence 245666666554443 2355666666655522 21111111111111011111110 0000 00000000
Q ss_pred hChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCch---hHHHHHHHHHHHhCCChhhhH
Q 000049 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA---FNAHALGALAEVAGPGLNFHL 2072 (2629)
Q Consensus 1996 ~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~---~~~~aL~~La~~~g~~l~~~l 2072 (2629)
..... ++++|. ..+..+..++ .++.... ....+...+....|.....++
T Consensus 798 ~~~~~-~e~~p~------------v~I~~l~~~l---------------~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l 849 (2341)
T KOG0891|consen 798 VNPSN-DEYYPA------------VTIHALMGIL---------------KDPSLSIHHTAVAQAIMHIFQSLGLKCVLFL 849 (2341)
T ss_pred hhhhh-hhhhhH------------HHHHHHhhhh---------------hhhhhHHHHHHhhhchhHHHHhhccchhhhH
Confidence 00000 222221 1111111110 0000000 123344445556678888999
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChh---HHHHHHHHHHHHHHhchhhhhh
Q 000049 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS---IRRSSAYLIGYFYKNSKLYLVD 2149 (2629)
Q Consensus 2073 ~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~---vR~~a~~~L~~l~~~~~~~~~~ 2149 (2629)
++++|.++..........++....-+... ......+..++++.+...+++.++. +.......+..+....+..+..
T Consensus 850 ~qv~~~~~~~~r~~~~~~~~f~~~q~~~~-~~~~~~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~ 928 (2341)
T KOG0891|consen 850 DQVIPTLIDVMRSCPPNLREFYFQQLTSL-VAIVRQHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKK 928 (2341)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhhhh-hhccchhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999998887654444444322111111 1122344445555555544443321 1111122222222233334444
Q ss_pred hHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccch
Q 000049 2150 EAPNMISTLIVLLSDSDST-TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2629)
Q Consensus 2150 ~~~~il~~Ll~ll~d~d~~-V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~ 2228 (2629)
|++..+...+.-+ ..+.. .+.... .+.+.+. .-|-+...+..
T Consensus 929 ~l~~~~~~~l~~~-~~~~s~~~~~~~--------------------~~~~~~~----------------~~~~~~~~~~h 971 (2341)
T KOG0891|consen 929 YLPELLPTMLTVL-QHDKSKDRVVSR--------------------KVLQSLQ----------------KFGSNLEQYLH 971 (2341)
T ss_pred hhhhhccchheee-cccccchHHHHH--------------------HhhHHHH----------------hcCccHHhhHh
Confidence 4444443333322 11100 000000 0000000 00111112333
Q ss_pred hhHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCC
Q 000049 2229 PLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA 2306 (2629)
Q Consensus 2229 ~ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~ 2306 (2629)
.++|.+++.+.+. ....+..+..+++.+... .++..|...+..++.|.+... .+.+..++.+++.+....+..
T Consensus 972 l~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~---~~~~~~~s~i~~~~~r~l~~s--~el~~~~~~~l~~l~~~~~~~ 1046 (2341)
T KOG0891|consen 972 LLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQ---VDLSEYASRIIHPLVRVLSSS--PELRDVIMDTLIALVKQLGKD 1046 (2341)
T ss_pred hhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHhhcCc
Confidence 4566666666655 455677888888888764 356778888889999998764 889999999999999999988
Q ss_pred ccCchHHHH
Q 000049 2307 LKPFLPQLQ 2315 (2629)
Q Consensus 2307 l~p~lp~L~ 2315 (2629)
+.-|.|-+.
T Consensus 1047 ~~i~~p~~~ 1055 (2341)
T KOG0891|consen 1047 FAIFIPMVN 1055 (2341)
T ss_pred eeehHHHHH
Confidence 887777665
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.1 Score=65.06 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh--hhcc
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS--QCLP 1498 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~--~~L~ 1498 (2629)
..+.+...+.|+.- ..-....+...|....+-....++..+.....+..|..|.+-...+..+.. |..+. ..+.
T Consensus 182 e~~~~w~qls~~~~--h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~--~~~l~~~~lL~ 257 (533)
T KOG2032|consen 182 EVSRRWSQLSDNDI--HRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKR--PKELDKTGLLG 257 (533)
T ss_pred cccchhhhcccCcc--cHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhC--cccccccccHH
Confidence 34444555555522 222222333334433333345566656666667778877766666655543 33332 3356
Q ss_pred chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch---hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhh
Q 000049 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2629)
+++..+..-..|++..+|..|+.+|++.++..++. +...++..++..+.|+.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~------------------------- 312 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL------------------------- 312 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC-------------------------
Confidence 67777777788999999999999999999875432 22333444444443332
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
+.+|.-.+..++..+..... ..++.+|+-.+.-.+.....+.++++|..++..+|.++...|..
T Consensus 313 -------------~~~V~leam~~Lt~v~~~~~-~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 313 -------------NEEVQLEAMKCLTMVLEKAS-NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred -------------ccHHHHHHHHHHHHHHHhhh-hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 23444445555554444432 25788888888888999999999999999999999999987754
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.16 Score=59.39 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcc-chhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH----HHHHHHHHHHhcCCc
Q 000049 1904 VAGRALGELVRKLGE-RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1978 (2629)
Q Consensus 1904 ~A~~~L~~lv~~~~~-~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l----~~ll~~l~~~L~d~d 1978 (2629)
....||.++.+...+ ...|.+.|-++.++..++..++.-+|..++.+++.+......+.+ ..+++.+..++...|
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 367778877766543 477999999999999999999999999999999988765554433 578888999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000049 1979 LEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1979 ~~VR~~A~~al~~l~ 1993 (2629)
.+|..+|.+.+..+.
T Consensus 142 deVAkAAiesikria 156 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888765
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0058 Score=75.04 Aligned_cols=199 Identities=14% Similarity=0.102 Sum_probs=145.0
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH
Q 000049 2234 FLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312 (2629)
Q Consensus 2234 ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp 2312 (2629)
+++++.+. ..+.+..|..-|-.+...-+-.....|..+|.-.++.++++..+...|..+|..|..+++.-+..+..+..
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 44444433 34555556554444443333345677788888889999999768889999999999999998888888888
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHH
Q 000049 2313 QLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391 (2629)
Q Consensus 2313 ~L~~~~~k~L~d~~-~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~ 2391 (2629)
..+..++.+-.|++ +.+|.++--|+-.+..+.|- .-+.-+...+.+.|...-..+++.+..+++....+..-..++.
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~d 448 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPD 448 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhh
Confidence 88888888888984 55555555555555555542 2334444445555656666777888888887766554577888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000049 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2629)
Q Consensus 2392 i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2629)
|.+.+.+.+++.+..||..+..||-++...++.+++.+++..+
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 8999999999999999999999999999999977777777643
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=1.1 Score=59.93 Aligned_cols=265 Identities=17% Similarity=0.216 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCC-----hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc-
Q 000049 1436 VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT- 1509 (2629)
Q Consensus 1436 VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~- 1509 (2629)
-|+...+.+..+.+.+++.....+...+-+.+.+.+ |..-..++-.+..+++....... .-+|.+++.+-
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccc
Confidence 456666666666666665544555555555555544 87777777777777765443332 33555555432
Q ss_pred ----CCCHHHHHHHHHHHHHHhhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHH
Q 000049 1510 ----DTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2629)
Q Consensus 1510 ----D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2629)
-.++..-..+...++.++..+++ | ++...+|. +.+
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~---------------------------------------L~~ 556 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPL---------------------------------------LFQ 556 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHH---------------------------------------HHH
Confidence 23666666777777777766654 2 33444444 444
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----Cchh
Q 000049 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPD 1657 (2629)
Q Consensus 1584 ~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~g~~----~~~~ 1657 (2629)
++... +.-..+...+..+|+. .+.++.||.+.++..+...+.. -.+..|....+++|.+......+ ++..
T Consensus 557 ~Lh~s--k~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 557 GLHNS--KESEQAISTLKTLCET--CPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HhcCc--hHHHHHHHHHHHHHHh--hhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 44322 2223344447777774 4568999999999999988874 35678999999999999887733 4455
Q ss_pred hHHHHHHHhcc----CCC-h-HHHHHHH--HHHHHHHHhhChh-----------------------HHHhHhHHHHHhhc
Q 000049 1658 LVSWLLDALKS----DNS-N-VERSGAA--QGLSEVLAALGTV-----------------------YFEHILPDIIRNCS 1706 (2629)
Q Consensus 1658 ll~~Ll~~L~~----~~~-~-~~R~~a~--~~L~~i~~~~g~~-----------------------~l~~llp~l~~~l~ 1706 (2629)
++..++..++. +-. . ..+..++ .+++.+...+..+ ...+++|.+-+.+.
T Consensus 633 lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 55555554432 111 1 1222222 2244444332110 11334444444333
Q ss_pred --CCChhhHHHHHHHHHHhhhhhccch-HhhHHhHHHHHHhhcC
Q 000049 1707 --HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 1747 (2629)
Q Consensus 1707 --~~~~~vR~~a~~~l~~L~~~~g~~f-~p~l~~ii~~ll~~L~ 1747 (2629)
.....+-++++..++.=....++.| .|+++++.+.+.....
T Consensus 713 ~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 2355666677666665566667778 8999999998888544
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=75.65 Aligned_cols=308 Identities=17% Similarity=0.179 Sum_probs=191.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHH
Q 000049 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2629)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~i 2154 (2629)
+.+.+-+-|+.+++-+|......+..+ -..+-+.+++|.+...+.+.+.-||..|..+++.+++.. .++.+-.|++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc---CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHH
Confidence 345556678889999998876665443 123558999999999999999999999999999999873 4566666777
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccc-------c--------chHHHHHHHHhhhhhhhhhhhcCCccccc
Q 000049 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ-------P--------SYIKVIRDAISTSRDKERRKKKGGPILIP 2219 (2629)
Q Consensus 2155 l~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l-------~--------~l~~~l~~~l~~~~~~~~~~~~~~~~~l~ 2219 (2629)
+...+. .+.|+....+|.-.|-..-......++ + .+++.+++....
T Consensus 176 i~~fL~--~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~----------------- 236 (948)
T KOG1058|consen 176 IESFLL--TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA----------------- 236 (948)
T ss_pred HHHHHH--hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc-----------------
Confidence 766543 355555666555433222111100111 1 111112111110
Q ss_pred CCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH
Q 000049 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2629)
Q Consensus 2220 g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2629)
-|..-...+..+...|.+.++.++..|+.+|..+.. .+..+++....+ ++.+-+..+.++|.-.++-|..+
T Consensus 237 ---~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~----i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 237 ---NPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKAAASTY----IDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred ---CHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHHHHHHHHH----HHHHHhccCcchhhhhHHHHHHH
Confidence 011112244555566666777777777766665542 235666665554 44444434556777777777776
Q ss_pred HHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcC-------CHHHHHHHHHH
Q 000049 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVS-------DAGIREAILTA 2372 (2629)
Q Consensus 2300 ~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~-------d~~vr~~~l~A 2372 (2629)
-.. -+..+..+.--+++.|+.++-+||..+..-.-.|+. +.++..++..|-..+..+ ...-|...+++
T Consensus 308 ~~~----~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs-srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLikt 382 (948)
T KOG1058|consen 308 KAL----HEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS-SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKT 382 (948)
T ss_pred hhh----hHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 522 223456677778888999999999988765555543 345666666655544221 14557778888
Q ss_pred HHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
++.+..++ +.+...+++.+.+.+.|.++.....+...+......+|.
T Consensus 383 ih~cav~F-----p~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 383 IHACAVKF-----PEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHhhcC-----hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch
Confidence 87776553 567788899999999988877665555556666666663
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0075 Score=69.00 Aligned_cols=110 Identities=23% Similarity=0.235 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000049 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2629)
Q Consensus 2242 ~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~ 2321 (2629)
++.+|..+..++|+++...+ ..+.||++. +...+.|. ++.||..++.+|..|+...- -.+-+++...++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~----l~~~L~D~-~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPN----LYKCLRDE-DPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHH----HHHHHCCC-CHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHH
Confidence 36789999999999998887 666777555 46677775 89999999999999987532 22346677788899
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc-cC-ChhHHHHHHHHhhhc
Q 000049 2322 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 2360 (2629)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~l~~~-~~-~~~~ll~~Ll~~l~~ 2360 (2629)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 467788888887754
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.26 E-value=1.1 Score=61.41 Aligned_cols=131 Identities=20% Similarity=0.221 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hH--HhHHHHHHhccCCC
Q 000049 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDP 1549 (2629)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i--~~lvp~Ll~~l~d~ 1549 (2629)
+.-+.++.+|.++++.......-.-.++++.|.++|+..+.++.-.+...|..++-.-.|. .+ ..++|.|.+.+..+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 3344677889999987655544445789999999999999999999999999987554443 22 57899999999877
Q ss_pred ChhHH-HHHHHHHhccccccCChhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1550 NDHTK-YSLDILLQTTFVNTVDAPSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1550 ~~~~r-~al~~L~~~~~~~~~~~~~l-~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
+.... .++..|..-+|......... ..++|.+...+.+. ..+..+..++.+++.
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM 399 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc
Confidence 66544 57777665455444332222 34678888888765 345567777777764
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.018 Score=71.65 Aligned_cols=190 Identities=17% Similarity=0.176 Sum_probs=136.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhh-cChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcC--CCc
Q 000049 2231 LPIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IAL 2307 (2629)
Q Consensus 2231 lp~ll~~L~~~~~~~r~~aa~~L~~l~~~-~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~--~~l 2307 (2629)
+.-.++.+.+.....|+.++..+..+... .-++.+......++..+.+.+... ..+-+..++.+++.++-.+| ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 33455666667788999999988887744 333556666777888888888764 34667788899998888866 455
Q ss_pred cCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhccC-Chh------HHHHHHHHh--hhc----------CCHHHH
Q 000049 2308 KPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALST-RVD------PLVGDLLSS--LQV----------SDAGIR 2366 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l~~~~~-~~~------~ll~~Ll~~--l~~----------~d~~vr 2366 (2629)
..++..+.+.+.+.+.|. +..+|..++.|||.+.-+.. ..+ ..+..+... .+. +++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 567778888888888886 56788899999998844322 222 222211111 111 125789
Q ss_pred HHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 000049 2367 EAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2629)
Q Consensus 2367 ~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2629)
.+++.++.-++...+...........++.|...+++.+-+||.+|+++|+-+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987765322456677788888999999999999999999877654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.002 Score=71.28 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH---HHhc
Q 000049 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 2303 (2629)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L---~~~~ 2303 (2629)
...++|+|.+|+.....+-+-.|..++.++++..+.+.+.|.+++++.|+.+.++.+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 457999999999999999999999999999999566889999999999999999987 899999999999999 6788
Q ss_pred CCCccCchHHHHHHHH
Q 000049 2304 GIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2304 ~~~l~p~lp~L~~~~~ 2319 (2629)
|..+.||..||.+.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999876
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.029 Score=73.63 Aligned_cols=222 Identities=16% Similarity=0.166 Sum_probs=148.3
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHH
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp 1778 (2629)
...+..+.++...+|-+++..+..+.+.-...=.-....++...+..++|++.+|--+|+++...+++.|+++.++.+..
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e 809 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE 809 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH
Confidence 34455667788899999999999988743322122345799999999999999999999999999999888876665555
Q ss_pred HHhhccCCC--chHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCc
Q 000049 1779 AVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2629)
Q Consensus 1779 ~l~~~l~d~--~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~ 1856 (2629)
...+.-... +.+++.+ ++++.++...+ +... .++..++.....+..|+
T Consensus 810 ~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~G-----------------------el~~-----~y~~~Li~tfl~gvrep 859 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVG--EAILKVAQALG-----------------------ELVF-----KYKAVLINTFLSGVREP 859 (982)
T ss_pred HHHhcccCCCccceehHH--HHHHHHHHHhc-----------------------cHHH-----HHHHHHHHHHHHhcCCc
Confidence 443322222 3333333 44444432211 0111 23344444444455688
Q ss_pred cHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhh-------hHHHHH
Q 000049 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP-------SIIPIL 1928 (2629)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~-------~llp~L 1928 (2629)
+..-|..++..++.++..+...+..++..++..++.... +.+.-+|.+|+..+..+....|...+| .....+
T Consensus 860 d~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl 939 (982)
T KOG4653|consen 860 DHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETL 939 (982)
T ss_pred hHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 888899999999999987766666777777777766654 678899999999999999999977665 222333
Q ss_pred hhhcCC-CChhHHHHHHHHHHHH
Q 000049 1929 SRGLKD-PSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1929 ~~~L~d-~~~~vR~~a~~aL~~l 1950 (2629)
....++ ++..+|..+|.++.++
T Consensus 940 ~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 940 LSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHhcCchhHHHHHHHHHHHHH
Confidence 333333 4455677777766654
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.12 E-value=1.8 Score=56.50 Aligned_cols=226 Identities=17% Similarity=0.142 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHhhh-----chhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHH
Q 000049 1755 DAALGAGHVLVEHYAT-----TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2629)
Q Consensus 1755 ~~al~al~~iv~~~~~-----~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~ 1829 (2629)
+..++.+..++..++. +.+..++..+.++...++-.+|..+++++..++.... +
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-----------e---------- 118 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-----------E---------- 118 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-----------c----------
Confidence 4455666666665542 2445577778888888888999999999988763211 0
Q ss_pred HHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2629)
Q Consensus 1830 ~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L 1909 (2629)
.+.+.++.+...+...+.|..+.||..|+-++..+-......=-+....+...+ =+||++++|..|..++
T Consensus 119 -------idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~li---qnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 119 -------IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLI---QNDPSDEVRRAALSNI 188 (892)
T ss_pred -------cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH---hcCCcHHHHHHHHHhh
Confidence 111234445556666678989999999999998886432221112222222211 2489999999998776
Q ss_pred HHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000049 1910 GELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2629)
Q Consensus 1910 ~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al 1989 (2629)
.- -+..+|.+.+..+|-+...|.-+..-+..-+. .... -.+.-+-.+...+.|.+..|+.++..++
T Consensus 189 ~v---------dnsTlp~IveRarDV~~anRrlvY~r~lpkid-~r~l----si~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 189 SV---------DNSTLPCIVERARDVSGANRRLVYERCLPKID-LRSL----SIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred cc---------CcccchhHHHHhhhhhHHHHHHHHHHhhhhhh-hhhh----hHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 31 23445555555566665666554433221111 0001 1234455667789999999999887766
Q ss_pred HHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHH
Q 000049 1990 STLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL 2029 (2629)
Q Consensus 1990 ~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il 2029 (2629)
.. .++ ...+.-++.+++.|.-+..++.+..++..++
T Consensus 255 l~--~Wl--~~~dgni~ElL~~ldvsnss~vavk~lealf 290 (892)
T KOG2025|consen 255 LS--GWL--RFSDGNILELLERLDVSNSSEVAVKALEALF 290 (892)
T ss_pred HH--HHh--hhccccHHHHHHHhccccchHHHHHHHHHHH
Confidence 43 111 1233446778888877666555555555544
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=2.3 Score=56.37 Aligned_cols=305 Identities=16% Similarity=0.139 Sum_probs=157.2
Q ss_pred CccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc-----CCCHHHH-HHHHHHHHHHHHHhccc------hhh
Q 000049 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-----SSSSERR-QVAGRALGELVRKLGER------VLP 1922 (2629)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-----~~~~~~R-~~A~~~L~~lv~~~~~~------~l~ 1922 (2629)
|....+|-+|-.....+..+.+..+-+++-..+....++.. +-+.-.+ -++..+.|.-.-.+.+. ...
T Consensus 408 dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~ 487 (978)
T KOG1993|consen 408 DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQE 487 (978)
T ss_pred cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33456788888888888776555433333332222222221 1111122 22223333222222111 123
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH--hChh
Q 000049 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS--AGMQ 1999 (2629)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~--~g~~ 1999 (2629)
.++|-+.. -.+...-.|..++..+|+.+..-.+ .+.-+-+...+...+.|. |.-||-.++.++..+.+. +.++
T Consensus 488 ~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 488 ALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred hhCHHhhh-cccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 44444441 1122344678888888877653222 222244556667788887 778999999999988764 3455
Q ss_pred hhhhhHHHHHHhc-------cCcCchhHHHHHHHHHHhhhccCcCccc------chhhhcCC-----CchhHHHHHHHHH
Q 000049 2000 AIDEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPHI------LPKLVHLP-----LSAFNAHALGALA 2061 (2629)
Q Consensus 2000 ~~~~ilp~Ll~~L-------~~~~~~~~aL~~L~~il~~~~~~ilp~L------ip~L~~~~-----~~~~~~~aL~~La 2061 (2629)
.+-+++|.+...+ +.-+++-..|..+..++...+..+-|+. +|.+=... .+..-..++..+.
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 5666666554333 3334555677777777766555555553 33332211 1111223445555
Q ss_pred HHhCCChhhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 000049 2062 EVAGPGLNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSAYLI 2136 (2629)
Q Consensus 2062 ~~~g~~l~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~--~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L 2136 (2629)
...|..-.+..+-++|.+--...-. ..-.-+.+.+.+..++.... .+.+-.+.|.+...+.......| .+...+
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii 722 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMII 722 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 6677665555555555554444322 23345667777777766543 24455666666666643322322 233333
Q ss_pred HHH-HHhchhhhhhhHHHHHHHHHHHhcC
Q 000049 2137 GYF-YKNSKLYLVDEAPNMISTLIVLLSD 2164 (2629)
Q Consensus 2137 ~~l-~~~~~~~~~~~~~~il~~Ll~ll~d 2164 (2629)
... .-..+.-+..|...+...+...++|
T Consensus 723 ~sYilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 723 SSYILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2223334456667777777777755
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=67.22 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=88.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH-hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2629)
+++.++..+.++++.+|..+..++..+....+.. .++ .++|.+++.+.+++.+++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6788888889999999999999999987653222 233 789999999999999999999999999998765443332
Q ss_pred c-cchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1497 L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
. .++++.+.+.+++.+.++|+.++++|.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 468999999999999999999999999886
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.33 Score=64.07 Aligned_cols=195 Identities=16% Similarity=0.109 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch---hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS---LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~---l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
.-+.++++.|..+.|......|...|..++.-...+. +.-..++|.|...++++.++....-|+.|+.++++.+|+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3556677777666455566666666665553222222 2223678889999999888999999999999999999975
Q ss_pred chhHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhHH-hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc
Q 000049 1414 FEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2629)
Q Consensus 1414 ~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2629)
..-.|. +.+|.++..+- =.--+|-+.+.+++..+...-+....+ .-+-..+.+|+==.-..++.|+.+..+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 544443 47788776553 345578888888888887755544331 122223333321123445667777777776554
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
..-..+.-+.+|.|..+|+..+..+-+.++-|+..++..+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 44445566788999999998888999999999999998765
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00063 Score=60.92 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000049 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2629)
|.+|.+|+.+|+.+++..+..+.+++.+++|.+..++.|+++.||.+|..+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998888889999999999999999999999999998888643
|
... |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.057 Score=71.09 Aligned_cols=223 Identities=14% Similarity=0.103 Sum_probs=157.4
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHH
Q 000049 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 2009 (2629)
Q Consensus 1930 ~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll 2009 (2629)
..+.|+.+.+|.++...+..+++.-.+.. ......++..+...+.|.|+-|--+|.+++..+++.... .++|.+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~dL~ 808 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPDLS 808 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHHHH
Confidence 34667778889888888888877432222 224466888888999999999999999998888876544 4566555
Q ss_pred HhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHH
Q 000049 2010 HALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMD 2089 (2629)
Q Consensus 2010 ~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~ 2089 (2629)
+.-.+.... + .+...-....|+..++...|+-+..|...++...++..++++..
T Consensus 809 e~Y~s~k~k-------------------~-------~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~ 862 (982)
T KOG4653|consen 809 EEYLSEKKK-------------------L-------QTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHE 862 (982)
T ss_pred HHHHhcccC-------------------C-------CccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHH
Confidence 432221100 0 00011123467888888889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhcc---cccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhchhhhhhh----HHHHHHHHHHH
Q 000049 2090 VQSLAKEAAETVTLVID---EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYLVDE----APNMISTLIVL 2161 (2629)
Q Consensus 2090 vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l-~d~~~~vR~~a~~~L~~l~~~~~~~~~~~----~~~il~~Ll~l 2161 (2629)
.|.++...++.++.... .+.+.++...++... .|+.+.+|++|+..+..+...++.++.+. .-+....+...
T Consensus 863 ~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~ 942 (982)
T KOG4653|consen 863 FRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSY 942 (982)
T ss_pred HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 89999999998887543 345666666666655 47788999999999999999888887763 34455555554
Q ss_pred hc-CCChhHHHHHHHHHHHHHhh
Q 000049 2162 LS-DSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2162 l~-d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
.. +++..++-.+..|+..+-..
T Consensus 943 vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 943 VRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HhcCchhHHHHHHHHHHHHHHHH
Confidence 44 55556777777776665443
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.024 Score=64.87 Aligned_cols=109 Identities=22% Similarity=0.315 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHH-hccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCC
Q 000049 2326 TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 2404 (2629)
Q Consensus 2326 ~~~vR~~Aa~aLg~l~-~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~ 2404 (2629)
++.+|..+..++|.|. .+.+-++++++.+...++++++.||..++..|..++...- ....+.++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCCC
Confidence 4789999999999994 4556689999999999999999999999999999987522 2345666555556778999
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 000049 2405 DHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438 (2629)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~ 2438 (2629)
+.+|..|..++..+.....+..+...+.+++..+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999988744455666666665433
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0028 Score=67.55 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=82.5
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhcc-chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
.++|.+++.+.+.+|+.|..++.+|+.++...|........ +++|.+.+++.|++++|+..|+++|++++...... ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 36788888899999999999999999999876655444444 89999999999999999999999999998643210 00
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000049 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2629)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~ 1604 (2629)
. + .-..+++.+.+.+.+.+.+++..++.++.+++
T Consensus 86 ~----------------------~------------~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 I----------------------V------------LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred H----------------------H------------HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 0 0 00124555555666666778888888887765
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.022 Score=70.62 Aligned_cols=228 Identities=16% Similarity=0.191 Sum_probs=147.9
Q ss_pred cchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhh
Q 000049 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK 1376 (2629)
Q Consensus 1297 ~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~ 1376 (2629)
.-..+.+.+-+.+.+++.-.-.+++-.++-++ .+.-..+.++.++.--.+.+...+.++-+.+++.+.-+. ...
T Consensus 443 an~eiye~lKe~l~nD~a~~geAa~~gMGl~m--Lgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe~-- 516 (926)
T COG5116 443 ANREIYEKLKELLKNDRALLGEAAVYGMGLLM--LGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QEM-- 516 (926)
T ss_pred ccHHHHHHHHHHHhcchhhhhhhhhhccceee--ecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HHH--
Confidence 34567777777777766555555554444432 334456777777765544434456677777777666432 221
Q ss_pred hcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhcHHh
Q 000049 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQG 1455 (2629)
Q Consensus 1377 ~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR~aa~~al~~i~~~l~~~~ 1455 (2629)
.-+.+.+++.++ ++..|.++++.++....+-|+ ..++..++.. .+|.+.+||.+|..+++.++-. +
T Consensus 517 --add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--D-- 583 (926)
T COG5116 517 --ADDYINELLYDK-DSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--D-- 583 (926)
T ss_pred --HHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEec--C--
Confidence 223566677766 899999999988776666554 1344444444 7899999999999988776321 1
Q ss_pred HHhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---
Q 000049 1456 VKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--- 1531 (2629)
Q Consensus 1456 v~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--- 1531 (2629)
...++..++.|.+ -+..+|.+..-+||-.+.+...+. -+..|-.+..|++.-||..|+-+++.+.....
T Consensus 584 -~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 584 -RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3456666666654 578899999999987765443332 23345556789999999999999988765443
Q ss_pred chhHHhHHHHHHhccCCCC
Q 000049 1532 NPEIASLVPTLLMGLTDPN 1550 (2629)
Q Consensus 1532 ~~~i~~lvp~Ll~~l~d~~ 1550 (2629)
+|.+..+...+...+.+..
T Consensus 657 np~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhHHHHHHHHHHHHhhhh
Confidence 3566667777766665543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.24 Score=65.01 Aligned_cols=292 Identities=12% Similarity=0.100 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000049 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~ 2319 (2629)
.|+...+.-|+..|....+..+ .....-+..++.++.|. +..||..|+..|..++..- ..|++.+..++.
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP-----~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFP-----DLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN----PEHVSKVADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-G-----GGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHH
Confidence 3678889999999999887665 22344455667777775 8889999999999988753 358899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHhhcCCCcC---hHHHHHHH
Q 000049 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSVS---SAVKIRVY 2393 (2629)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~---~~d~~vr~~~l~AL~~vi~~~g~~~~---~~~~~~i~ 2393 (2629)
+.|+..+......+-.+|-.+...+| ...+..++..+. ..|..+|+.++..|..-+...+..+. .+.-.-|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~--k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP--KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 99998888888888899888876554 345555666654 56788999999999888877766543 35667777
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHhhc------CCCCchhhHhHHHHHHHHHhhCCccc
Q 000049 2394 SVLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAI 2464 (2629)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~~~~~~~~l~~~l~~~p~~~ 2464 (2629)
..+...+.|-...--.....+|+.+-. ..+......+++.+.... ...+.......+.++...+......+
T Consensus 181 ~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v 260 (556)
T PF05918_consen 181 DEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGV 260 (556)
T ss_dssp HHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCC
Confidence 888888888655555566677777665 234433444444332211 11222222223334444333322222
Q ss_pred cCChhHHHHHHHHHhhh----cCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCC--H----HHHH
Q 000049 2465 SMSPLFLSILDRLKSSL----KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS--S----EVRR 2534 (2629)
Q Consensus 2465 ~~~~~~~~i~~~l~~~~----~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~----~vr~ 2534 (2629)
-. ..++.+++..+ .+=....+-.-...++.+..+++..+ ....+..+...|...+.... + ..-.
T Consensus 261 ~S----skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vE 334 (556)
T PF05918_consen 261 SS----SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVE 334 (556)
T ss_dssp ------HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHH
T ss_pred Ch----HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhh
Confidence 22 24445554433 33233445556666666666654321 11223333344433332221 1 2235
Q ss_pred HHHHHHHHHHhhCch
Q 000049 2535 RALSALKSVAKANPS 2549 (2629)
Q Consensus 2535 ~al~~l~~~a~~~~~ 2549 (2629)
+.++++.++++..|+
T Consensus 335 cLL~afh~La~k~p~ 349 (556)
T PF05918_consen 335 CLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHHTT-TH
T ss_pred HHHHHHHHHhhhCcc
Confidence 688899999999886
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.034 Score=69.16 Aligned_cols=191 Identities=19% Similarity=0.188 Sum_probs=131.4
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHh--hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC--c---
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N--- 1532 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~--- 1532 (2629)
|...++.+.++.-.+|..++..+..+.. ..++.+......++..+.+.++-...+-+..|+++++-++-.++ .
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3344455556666677777776655443 24566666777888888999987777677788888888876655 1
Q ss_pred hhHHhHHHHHHhccCCCChh--HH-HHHHHHHhccccccCChhhhhhHHHHHH---Hh--hc----------CCCHHHHH
Q 000049 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKK 1594 (2629)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~--~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~---~~--L~----------d~~~~vr~ 1594 (2629)
..+..+.|.|...+.|.... .| .|+.+|+-..|+...+.......+..+. .. .+ ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 24588889999998887653 44 4566666555655444444442223322 11 11 11357888
Q ss_pred HHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000049 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g 1651 (2629)
.|...++-+...++. ..+..++...+|.|..+|..++.+||.+|..+|+-+.+...
T Consensus 205 aAL~aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999988876543 34556778889999999999999999999999999988655
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0025 Score=63.63 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=69.6
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1422 lp~ll~~l-~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
+|.+++.+ +|+++.||..+..+++.+ +-...+|.+.+.+.+++|.+|..++..|+.+.. ++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46778888 899999999988888743 334778999999999999999999999998742 557
Q ss_pred HHHHhhhhcCC-CHHHHHHHHHHHH
Q 000049 1501 VPKLTEVLTDT-HPKVQSAGQTALQ 1524 (2629)
Q Consensus 1501 vp~L~~~L~D~-~~~VR~aA~~aL~ 1524 (2629)
++.+.+.+.|+ +..||..|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888764 6677999999885
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.82 E-value=5.8 Score=57.54 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=115.8
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2629)
.+-+..++|.|...+..++..+|..|...+|.++......++.-++.++...+..+.|.+.+||-.+.+....++-+.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 34467889999999999999999999999999998776666677789999999999999999999998888877766432
Q ss_pred ccccchHHHHHHHHhhhhhhhhhhhcCCc---ccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhh----
Q 000049 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV---- 2259 (2629)
Q Consensus 2187 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~---- 2259 (2629)
.. ......+.-..... +...+.+.+.. ..+..|.+ ..+..++....+.+.+.-+.+|.+|+..+..+.++
T Consensus 334 ~~-~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~ 410 (1266)
T KOG1525|consen 334 IA-KASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCL 410 (1266)
T ss_pred hh-hHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111111111111 11111122211 11222221 12222666667778888999999999999999874
Q ss_pred --cChhhhhhchhhhhHHHHHHhcCCCCHhHH
Q 000049 2260 --TSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2629)
Q Consensus 2260 --~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk 2289 (2629)
.|...+.+-+..|..-|++++-.. +-+.|
T Consensus 411 ~~~~~k~~t~~~swIp~kLL~~~y~~-~~~~r 441 (1266)
T KOG1525|consen 411 RSAGGKEITPPFSWIPDKLLHLYYEN-DLDDR 441 (1266)
T ss_pred hccCcccccccccccchhHHhhHhhc-cccHH
Confidence 122334455566666777776553 23444
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.79 E-value=6.1 Score=57.29 Aligned_cols=234 Identities=16% Similarity=0.170 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHH
Q 000049 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477 (2629)
Q Consensus 1398 ~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~ 1477 (2629)
+|...-..+.+.+++..++.+...+...+..-......++..-.+.+..+. ...++.+-.++|.|...|.+++-.+|..
T Consensus 200 ~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~Rl~ 278 (1266)
T KOG1525|consen 200 EADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVRLK 278 (1266)
T ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 343333444455555555555544433322211111122222222222221 2234456778899999999999999999
Q ss_pred HHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHH---hHHHHHHhccCCCChhHH
Q 000049 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA---SLVPTLLMGLTDPNDHTK 1554 (2629)
Q Consensus 1478 a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~---~lvp~Ll~~l~d~~~~~r 1554 (2629)
|+.++|.|......++....+.++...+.-+.|.+..||-++.+...++.-. +|.+. .+.-.+.....|++..+|
T Consensus 279 a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~~~~~~~~l~~~~~D~~~rir 356 (1266)
T KOG1525|consen 279 AVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAKASTILLALRERDLDEDVRVR 356 (1266)
T ss_pred HHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--CchhhhHHHHHHHHHhhcCChhhhhe
Confidence 9999999987655666677889999999999999999999999988876533 55542 222233334445544443
Q ss_pred HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh-c----CCCCcccchHhhhHHHHHHHhc
Q 000049 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----TEPKDMIPYIGLLLPEVKKVLV 1629 (2629)
Q Consensus 1555 ~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~-~----~~~~~l~~~l~~ll~~L~~~L~ 1629 (2629)
. +.++...-+....-...+.++..+...+.|+.|+||..|..-+..+... . ...+...+-.+.+-..++.++-
T Consensus 357 ~--~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y 434 (1266)
T KOG1525|consen 357 T--QVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYY 434 (1266)
T ss_pred e--eEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHh
Confidence 1 0000000000001111122566666778899999999999988877763 1 1113334444444455555555
Q ss_pred CCCHHHH
Q 000049 1630 DPIPEVR 1636 (2629)
Q Consensus 1630 d~~~~VR 1636 (2629)
..+.+.|
T Consensus 435 ~~~~~~r 441 (1266)
T KOG1525|consen 435 ENDLDDR 441 (1266)
T ss_pred hccccHH
Confidence 5545555
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.071 Score=61.40 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=129.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
+..+.+.+.|.+.........++++. +...-+|.+...+.+ ...-+|+.+.++||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~-------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM-------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh-------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 44455555555444444444444443 334456666665543 446677777777777652 44
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
+++.+.++.+|+...|++.+.-|+.++-..-.-.......| +.+ .||.... ...-++
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p-~~S--vdPa~p~--------------------~~ssv~ 157 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSP-YIS--VDPAPPA--------------------NLSSVH 157 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCc-ccc--CCCCCcc--------------------ccccHH
Confidence 55666666678888888877777766532100000000000 000 1222110 000012
Q ss_pred HHHHhhcCCC-H-HHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q 000049 1580 IVHRGLRERS-A-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2629)
Q Consensus 1580 ~L~~~L~d~~-~-~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ 1657 (2629)
.+...+.|.+ + -.|..+.-.+.++.. +.-+..+...+.+++.-.|..++.++|.+-. +.
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g~------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ 218 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIGT------------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PA 218 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccCc------------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hh
Confidence 2222222221 1 223333333333221 2245556666777788888888888887654 34
Q ss_pred hHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch
Q 000049 1658 LVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1658 ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f 1731 (2629)
-+|.|.+.|.+.+ ..-+|..++.+|+.++. ++.++.+.+.+.++.+-+|+++..+|..+-..-|+.|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 4666666665433 34578888888877654 2344556667778888889888888776554444444
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=4.1 Score=54.08 Aligned_cols=361 Identities=18% Similarity=0.227 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
..+.++.|++.+.++.-...|+.|+.||..+++........ .++-+ +.+.+ +|..|+..-.. ++..++....+.
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-~Gmk~-li~vL~~D~~D~E~ik~---~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-QGMKP-LIQVLQRDYMDPEIIKY---ALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-cccHH-HHHHHhhccCCHHHHHH---HHHHHHHHHhcC
Confidence 35677888888877766788999999999999865433322 12222 22233 33334432222 233333222210
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
=.|. -+.|+. .+-+ ....+++.+-. -+..+..++..++..+..+|..+++++.++..+-|..+
T Consensus 95 d~~~----------v~dds~-qsdd----~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~ 157 (970)
T KOG0946|consen 95 DSPE----------VMDDST-QSDD----LGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL 157 (970)
T ss_pred cchh----------hcccch-hhhH----HHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH
Confidence 0110 012221 1222 22222221110 13456667888889999999999999999999888776
Q ss_pred hhh---ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch----hHHhHHHHHHhccCCCC-----hhHHHHHHHHH
Q 000049 1494 SQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPN-----DHTKYSLDILL 1561 (2629)
Q Consensus 1494 ~~~---L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~~l~d~~-----~~~r~al~~L~ 1561 (2629)
... +|.-+..++.+|.|.+.-||..+.--|..+.+..++- .++.++..|+..+.... -.+.+|+-.+.
T Consensus 158 q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 158 QDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 554 5778889999999999999999999999988754321 23556667777765321 12345655432
Q ss_pred h---c-----c-ccccCChhhhhhHHHHHHHhh-cCCCHHHHHHH-----HHHHHHHhhhcCCCCccc------chHhhh
Q 000049 1562 Q---T-----T-FVNTVDAPSLALLVPIVHRGL-RERSAETKKKA-----AQIVGNMCSLVTEPKDMI------PYIGLL 1620 (2629)
Q Consensus 1562 ~---~-----~-~~~~~~~~~l~~i~p~L~~~L-~d~~~~vr~~a-----~~~l~~l~~~~~~~~~l~------~~l~~l 1620 (2629)
. . . |-..-.-|.+..++|...-+- ....|...+.+ .+++..+..- +.+.... -.-..+
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~ss~l 316 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVSSHL 316 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcch
Confidence 2 0 1 111111123333333322211 11245544433 2233332211 1111110 112346
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC----------Cch----hhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000049 1621 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2629)
Q Consensus 1621 l~~L~~~L~d~--~~~VR~~A~~aL~~l~~~~g~~----------~~~----~ll~~Ll~~L~~~~~~~~R~~a~~~L~~ 1684 (2629)
+..|..++-++ ..+|+..++.+++.+++..... +++ .++-.++....+..+...|..++.++-.
T Consensus 317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 317 LDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 66666666654 4578888888888887753211 112 2333333444444566678887777654
Q ss_pred HHHh--hChhHHHhHhHHHHHhhcCC-ChhhHHHHHHHHH
Q 000049 1685 VLAA--LGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFK 1721 (2629)
Q Consensus 1685 i~~~--~g~~~l~~llp~l~~~l~~~-~~~vR~~a~~~l~ 1721 (2629)
..-. -|. ..++..++....+. +-.+..+.+.+.+
T Consensus 397 ~l~dN~~gq---~~~l~tllp~~~nst~Nsl~ag~l~~~~ 433 (970)
T KOG0946|consen 397 YLYDNDDGQ---RKFLKTLLPSSTNSTSNSLSAGQLLLVG 433 (970)
T ss_pred HHhcchhhH---HHHHHHHhhhhccccccchhhhhHHHHh
Confidence 4321 122 23444444444443 2256666655544
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0089 Score=59.65 Aligned_cols=87 Identities=29% Similarity=0.466 Sum_probs=68.0
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000049 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2629)
Q Consensus 1578 ~p~L~~~L-~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~ 1656 (2629)
+|.|.+.+ +++++.+|..++.+++.+. -+..++.+...+.|+++.||..|+.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35667777 7889999999999988442 23578889999999999999999999998642 5
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHH
Q 000049 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~R~~a~~~L~ 1683 (2629)
+.++.|.+.+.++....+|..++.+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 678888888887776666877777664
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=4.2 Score=53.24 Aligned_cols=423 Identities=16% Similarity=0.142 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH------hHHhhHHHHHh
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLK 1465 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~------~v~~ilp~Ll~ 1465 (2629)
....+...+++.++.+-.+.+...+. ..++.+++++.+++ ..+++++..+++.+.+.-+.. ..+.+++.+..
T Consensus 68 ~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~ 147 (678)
T KOG1293|consen 68 ELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSL 147 (678)
T ss_pred hhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 33345666777777766665555554 57889999999998 899999999999998744221 22455555443
Q ss_pred hhc-cCChhhhHHHHHHHHHHHhhCch-hhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH--HhHHHH
Q 000049 1466 GLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPT 1541 (2629)
Q Consensus 1466 ~L~-~~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~lvp~ 1541 (2629)
.+. +.+...+.. +. +.+.+...+. +..-+-..+...+.-++..-+..+|.+|..++..-...+.|+.. ..++..
T Consensus 148 l~s~~lk~~~~l~-~~-~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~ 225 (678)
T KOG1293|consen 148 LYSIELKYISRLD-VS-RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGL 225 (678)
T ss_pred HHhhhhhhhhhhh-hh-hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHH
Confidence 333 111111110 00 1111111121 22222234444444444445788999999888864444444321 111111
Q ss_pred HHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc----
Q 000049 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP---- 1615 (2629)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p--~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~---- 1615 (2629)
+ .|.. +.+ .+.+.+.++....|-.++.++..++.. +..++-.+
T Consensus 226 L----~d~~--------------------------v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~ 274 (678)
T KOG1293|consen 226 L----KDKG--------------------------VNIRCVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFI 274 (678)
T ss_pred H----hccc--------------------------cchhhhhhhhhhCCCccHHHHHHHHHHHHHhc-ccccccccccee
Confidence 1 1110 011 122334455555666667777666654 21112111
Q ss_pred ---hHhhhH--HHHHHHhcCCCHHHHHHHHHHH---HHHHhhhCCC----CchhhHHHHHHHhccCC--ChHHHHHHHHH
Q 000049 1616 ---YIGLLL--PEVKKVLVDPIPEVRSVAARAI---GSLIRGMGEE----NFPDLVSWLLDALKSDN--SNVERSGAAQG 1681 (2629)
Q Consensus 1616 ---~l~~ll--~~L~~~L~d~~~~VR~~A~~aL---~~l~~~~g~~----~~~~ll~~Ll~~L~~~~--~~~~R~~a~~~ 1681 (2629)
..+..+ -.....+.+|.+..-..+.... ..+++..... ......+.++....+-. ....|.-++..
T Consensus 275 ~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e 354 (678)
T KOG1293|consen 275 FFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNE 354 (678)
T ss_pred eccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhh
Confidence 111111 1122223344322211111111 1133322211 11223333332222111 01122211111
Q ss_pred ---HHHHHHhhChh---HH-H-hHhHHHHHhhcCCChhhHHHHHHHHHHhhhh---hccchHhhHHhHHHHHHhhcCCCC
Q 000049 1682 ---LSEVLAALGTV---YF-E-HILPDIIRNCSHQRASVRDGYLTLFKYLPRS---LGVQFQNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1682 ---L~~i~~~~g~~---~l-~-~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~---~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2629)
....+...|.. .+ + ..+..++......+...+.+++.++..+... +...+ --.+++.++++.+.|++
T Consensus 355 ~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~--~~~dv~~plvqll~dp~ 432 (678)
T KOG1293|consen 355 TLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL--KRNDVAQPLVQLLMDPE 432 (678)
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC--ccchhHHHHHHHhhCcc
Confidence 11222222221 11 1 1122222222345777888888888766653 33332 23568888888889999
Q ss_pred hhHHHHHHHHHHHHHHHhhhch---hh-hHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccH
Q 000049 1751 ESVRDAALGAGHVLVEHYATTS---LP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~~---i~-~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~ 1826 (2629)
-.|..+++.++..++-.|++-. +. -.+..++...++.+..+|..++-.+..+.+.. + +
T Consensus 433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~-------------d-e---- 494 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC-------------D-E---- 494 (678)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-------------h-H----
Confidence 8999999999999887776421 21 25667788888999999999999998887642 1 0
Q ss_pred HHHHHHHHHHhchhhHHHHHH-HHHhhccCccHHHHHHHHHHHHHHHhcChhh
Q 000049 1827 EAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2629)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~vl~-~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2629)
.....+.. ++-. .+....+|+.+.|.+.+.+++..+.-+..+.
T Consensus 495 -~~k~~~~~--------ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 495 -EEKFQLLA--------KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred -HHHHHHHH--------HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 00011111 1111 1222358999999999999999888765443
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.4 Score=58.58 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=126.2
Q ss_pred hHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhc-hhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2230 LLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEF-VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2230 ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~-v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
=+.-+++++... ++.++.+|+.-+.++.....++.+.-| +..++|.|+.++....+.++...|..+|..|++.+|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 345567777765 666777777777777655555555544 356788899999998899999999999999999988654
Q ss_pred cCchH-HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCChh---HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC
Q 000049 2308 KPFLP-QLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVD---PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2629)
Q Consensus 2308 ~p~lp-~L~~~~~k~L~d-~~~~vR~~Aa~aLg~l~~~~~~~~---~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2629)
.-.+. ..++.|+..|.. .--+|-..+..+|-.|..-+|+.- .-+...+..+.-=...++..++.-...++.+...
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32221 134444444333 345777788888888765444210 0011111111111234555556555566655544
Q ss_pred CcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q 000049 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+- ..++-..+++|..++...+...-..++.|+.+++..+.
T Consensus 328 d~-f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 328 DE-FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred cc-chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 32 35677788999999999999999999999999987654
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.02 Score=67.27 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=124.5
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch---hH
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EI 1535 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i 1535 (2629)
.+...+..|.+++|..+..++..+..++.-.++.+...|..++..+.+-+++....|-.+||.+++.+.+.+.+. +.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778899999999999999999887788888889999999999999999999999999999999887654 23
Q ss_pred HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc
Q 000049 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2629)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2629)
+.++-.|+..-.+.+..+| +|-++|.. .+. ...-+.+++.|..++...++++|..++.+..+....++-+....
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~---~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVA--MVN---HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHH--HHh---ccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 4444444444444444555 33344332 111 12234567777777888889999999888776655544333334
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2629)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2629)
+|...+.+.+.+-+.|.-|.+|+.|-..
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHH
Confidence 5555666777776777776666554433
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=4.1 Score=55.64 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=68.2
Q ss_pred hhccCccHHHHHHHHHHHHHHH---hcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhh
Q 000049 1851 MVRSDVSLSVRQAALHVWKTIV---ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPS 1923 (2629)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~---~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~ 1923 (2629)
..+++.+..+|-.|++++.... ...+..+-|.+...++.++.++...++-.-..|..|+..+....|+- +...
T Consensus 810 ~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~d 889 (1014)
T KOG4524|consen 810 HLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLED 889 (1014)
T ss_pred HHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3468888999999999887533 34567788888899999999999999999999999999999988874 5677
Q ss_pred HHHHHhhhcCC
Q 000049 1924 IIPILSRGLKD 1934 (2629)
Q Consensus 1924 llp~L~~~L~d 1934 (2629)
++|.+...+.+
T Consensus 890 vlP~l~~~~~~ 900 (1014)
T KOG4524|consen 890 VLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHH
Confidence 88888765443
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.5 Score=57.28 Aligned_cols=240 Identities=16% Similarity=0.146 Sum_probs=142.2
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHhchhh-hhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHH
Q 000049 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2629)
Q Consensus 2117 Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~-~~~-~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~ 2194 (2629)
|-..+.++++.+|..|..+|+.+....+.+ +.. .+.-++.-+...++ |......+..++..+.+. .. .-+....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~-~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KN-FSPESAV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cC-CChhhHH
Confidence 344566778888888888888877765543 222 23334444444453 333444457777777632 11 1111111
Q ss_pred H-HHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhh
Q 000049 2195 V-IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2629)
Q Consensus 2195 ~-l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~ 2273 (2629)
. ++....... ++ +-....|..+...+..+..... ..++..-..++
T Consensus 80 ~i~~~l~~~~~-------------~q--------------------~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~fv 125 (262)
T PF14500_consen 80 KILRSLFQNVD-------------VQ--------------------SLPQSTRYAVYQLLDSLLENHR-EALQSMGDDFV 125 (262)
T ss_pred HHHHHHHHhCC-------------hh--------------------hhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHHH
Confidence 1 111111110 00 0123456666666666665543 33333333444
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHc--------CCC----CHHHHHHHHHHHHHHH
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL--------QDS----TRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L--------~d~----~~~vR~~Aa~aLg~l~ 2341 (2629)
.-++..+.+.-++.-...++..+..++...+ +.++..++..++.-.+ +|+ .++++..-..||.
T Consensus 126 ~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--- 200 (262)
T PF14500_consen 126 YGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--- 200 (262)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc---
Confidence 4455555543366666777888888877766 3677788877766543 233 1355555444443
Q ss_pred hccCCh-hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhh
Q 000049 2342 ALSTRV-DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400 (2629)
Q Consensus 2342 ~~~~~~-~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l 2400 (2629)
.++.+ +..+|.|++.+.++.+.++..+++.|..++...|.....+|...||+.+...+
T Consensus 201 -s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~Ei 259 (262)
T PF14500_consen 201 -STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFEI 259 (262)
T ss_pred -CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 33444 46689999999988888999999999999999887665899999999887543
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.86 Score=53.59 Aligned_cols=327 Identities=15% Similarity=0.129 Sum_probs=179.3
Q ss_pred cchhhH---HHHHHHHhhhhcCCCCh-hHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccch--------hhhHHH
Q 000049 1191 WLGRQG---IALALHSAADVLRTKDL-PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNV--------SLLFPI 1258 (2629)
Q Consensus 1191 ~~~R~~---~~~~l~~l~~~~~~~~~-~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~--------~~Ll~~ 1258 (2629)
..+|+. +..++..+....++-++ +.++.-| +.++..++..|+.-++..+..++++.+...+ .+++|.
T Consensus 54 enhrekttlcVscLERLfkakegahlapnlmpdL-QrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDL-QRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccchhhchhhhHHH-HhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 356766 55666666555554443 4555555 7888889999999998888888888775433 366677
Q ss_pred HHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHH-------HHhhcCCCcHHHHHHHHHhhhhhHhhh
Q 000049 1259 FENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDK-------LLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2629)
Q Consensus 1259 ~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~-------L~~~L~~~~~~Vq~~~~~~L~~l~~~~ 1331 (2629)
+-.++.. .++.+-.+++..+..++..-. .+..+++. +.+.-...+.-+|..+.+.+-.+....
T Consensus 133 ildcIgg------eddeVAkAAiesikrialfpa----aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS 202 (524)
T KOG4413|consen 133 ILDCIGG------EDDEVAKAAIESIKRIALFPA----ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS 202 (524)
T ss_pred HHHHHcC------CcHHHHHHHHHHHHHHHhcHH----HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 7777754 356677788888877775321 11112110 000001112234444443333222211
Q ss_pred ccc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh-hhCcchhhhhcHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q 000049 1332 QDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFE 1404 (2629)
Q Consensus 1332 ~~~-----~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~-~lg~~~l~~~~i~~~L~~~l~~~-~~~~~R~~Al~al~ 1404 (2629)
++. ...+++.+...|...+|.-++.........++. ..|.+.+.+..+++.+...+... .++-..--+++.++
T Consensus 203 pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfg 282 (524)
T KOG4413|consen 203 PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFG 282 (524)
T ss_pred HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence 111 135666677777665665566555544444443 33555555557788887777432 25666666777777
Q ss_pred HHHHHhc--cCchhH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-Hh----hHHHHHhhhccCC-h
Q 000049 1405 CLCEKLG--RLFEPY----VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL----VLPSLLKGLEDKA-W 1472 (2629)
Q Consensus 1405 ~La~~~~--~~~~~~----v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~----ilp~Ll~~L~~~~-w 1472 (2629)
.+..... +..+.. +...+...+......++...++|.++++.+.+...+..+ .. -...++....+.+ .
T Consensus 283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc
Confidence 6653322 111111 122334445555556678899999999999887655432 11 2223333333332 2
Q ss_pred hhhHHHHHHHHHHHh---hCchhhhh-----hcc-------------chHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1473 RTKQSSVQLLGAMAY---CAPQQLSQ-----CLP-------------KIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1473 ~~r~~a~~~L~~la~---~~p~~l~~-----~L~-------------~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
-....++.+|.+++. ..|+++.. .+. +=...+...++.+.|+++-++.+.+..++.
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 233445666666653 23443211 000 112234456677788888888888777764
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.096 Score=62.86 Aligned_cols=187 Identities=20% Similarity=0.196 Sum_probs=99.3
Q ss_pred HHHHhhhcc-CChhhhHHHHHHHHHHHhhCchh-hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hHHh
Q 000049 1461 PSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIAS 1537 (2629)
Q Consensus 1461 p~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ 1537 (2629)
..++..|+. .++..+..++.+++..+.....+ +... -+.++.+..++.++++.||..|.++|.+++...++. .++.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 334444442 34555555555555544322111 2111 356788899999999999999999999998766653 4566
Q ss_pred HHHHHHhccC-CC-ChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc
Q 000049 1538 LVPTLLMGLT-DP-NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2629)
Q Consensus 1538 lvp~Ll~~l~-d~-~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2629)
.++.+++.+. ++ +..++ .++..|..-+... .....+...+|.+.+.+...+..+|..+..++.+++. ++ ++.
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np-~~~ 168 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NP-DMT 168 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CH-HHH
Confidence 6666666432 22 22232 3455444321111 1112334455566666666666677666666666654 21 111
Q ss_pred ch--HhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC
Q 000049 1615 PY--IGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1615 ~~--l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
+. -.+.++.+..+++.. ..++...+...+..+...+.++
T Consensus 169 ~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 169 RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11 123344444444432 4455555555555555554443
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.37 E-value=16 Score=57.06 Aligned_cols=657 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh-------HHHhHhHHHHHhhcC-----CChhhHHHHHHHHH
Q 000049 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-------YFEHILPDIIRNCSH-----QRASVRDGYLTLFK 1721 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~-------~l~~llp~l~~~l~~-----~~~~vR~~a~~~l~ 1721 (2629)
++.+++..-++.......+ .+-.+-+-.+.+.+|.. .+-+++|.+++.++. ..+..|+-.....-
T Consensus 630 hv~~Ii~~smela~~a~ep---lnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLfvELcl 706 (3550)
T KOG0889|consen 630 HVHDIISTSMELATTAPEP---LNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLFVELCL 706 (3550)
T ss_pred chhHHHHHHHHHHhcCCcc---hhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHH
Q ss_pred HhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc--------hhhhHHHHHhhccCCC-chHHH
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFND-NWRIR 1792 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~--------~i~~llp~l~~~l~d~-~~~vR 1792 (2629)
.++..+.. +.||++.++.++..+++-. ++++...++.+...+.+..++ ..+.++..+...+.+. +...-
T Consensus 707 TvPvRLS~-Llpylp~LM~PLv~aLkgs-~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s 784 (3550)
T KOG0889|consen 707 TLPVRLSS-LLPYLPLLMKPLVFALKGS-PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYS 784 (3550)
T ss_pred hhhHHHHH-hhhhhhhhhhHHHHHhcCC-HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHH
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHH
Q 000049 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2629)
Q Consensus 1793 ~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2629)
..++..+|.+ +|...+...+..+.+.-.............-| +.
T Consensus 785 ~~a~rILGKl----gG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~--------------------------------~~ 828 (3550)
T KOG0889|consen 785 HRALRILGKL----GGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKG--------------------------------LA 828 (3550)
T ss_pred HHHHHHHHhh----cCcchhhcccccccccccCccccceEEEeccc--------------------------------cC
Q ss_pred hcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch--hhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000049 1873 ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV--LPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1873 ~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~--l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
....-.+.+.+......+...-. +...|..|...+.......-... .......+......+ -+.+...+...+.+
T Consensus 829 ~~~~lp~~~~i~sA~~~l~s~~~--d~~~~~qa~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-i~~~~e~~~~n~~~ 905 (3550)
T KOG0889|consen 829 HPLLLPLSKLIRSAFDALVSPNS--DPFYRKQAFKYLRCDLLLMVNLSADFKSSIRQLLTLVVWS-IDLRLECCEINLDL 905 (3550)
T ss_pred ccccCchHHHHHHHHHHHhCccC--CcchHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhcch-HHHhhHhhhccccc
Q ss_pred HHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHh
Q 000049 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2629)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~ 2030 (2629)
....+.....+..--..-.+-....-...+.|..|...+..+..+
T Consensus 906 ~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~----------------------------------- 950 (3550)
T KOG0889|consen 906 TERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRH----------------------------------- 950 (3550)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHH-----------------------------------
Q ss_pred hhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhh--------------hHHHHHHhcCCCCHHHHHHHHH
Q 000049 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGT--------------ILPALLSAMGDDDMDVQSLAKE 2096 (2629)
Q Consensus 2031 ~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~--------------il~~Ll~~L~~~~~~vr~~a~~ 2096 (2629)
.++..+....|..-.++... .+++|...+...+.+++.....
T Consensus 951 ------------------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~ 1006 (3550)
T KOG0889|consen 951 ------------------------FALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVR 1006 (3550)
T ss_pred ------------------------HHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHH
Q ss_pred HHHHHHh-----------hcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhh-hhhhHHHHHHHHHHHhcC
Q 000049 2097 AAETVTL-----------VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIVLLSD 2164 (2629)
Q Consensus 2097 al~~l~~-----------~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~-~~~~~~~il~~Ll~ll~d 2164 (2629)
++..+.. ....+-+..+++.+...+.++.|.-|...+..++.++...+.. +-++..+++..++-.+.|
T Consensus 1007 ~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d 1086 (3550)
T KOG0889|consen 1007 ALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKD 1086 (3550)
T ss_pred HHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcC
Q ss_pred CChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHH
Q 000049 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244 (2629)
Q Consensus 2165 ~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~ 2244 (2629)
-..++-......-... ++..++.........+.+. +....++..+...+.+++..
T Consensus 1087 ~~~e~~~~~~~~~~~~-----------l~~ll~~~~~~~~~~~~~~--------------~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1087 TESEVSSLPLDEAKDI-----------LMDILRVIFIDELAEEERA--------------KSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred CccccccchHHHHHHH-----------HHHHHHHHHHHhhhhHHHH--------------HHHHHHHHHHHHHHcCCchH
Q ss_pred HHHHHHHHHHHHHhhcChhh---hhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch----------
Q 000049 2245 LREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL---------- 2311 (2629)
Q Consensus 2245 ~r~~aa~~L~~l~~~~~~~~---l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l---------- 2311 (2629)
+|+.+..+|..+...+|.+. +.|+-+.+.-|+...--...+.......++.+...+.-.+..+.-..
T Consensus 1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhccCC--------hhHHHHHHHHhhhcCCHHHHHHHHHH
Q 000049 2312 -------PQLQTTFIKCLQDSTRTV----RSSAALALGKLSALSTR--------VDPLVGDLLSSLQVSDAGIREAILTA 2372 (2629)
Q Consensus 2312 -------p~L~~~~~k~L~d~~~~v----R~~Aa~aLg~l~~~~~~--------~~~ll~~Ll~~l~~~d~~vr~~~l~A 2372 (2629)
.+... +.+.....+..- |..+...++..+...+- ...++..+...+....+++.+.+..+
T Consensus 1222 ~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1222 ALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred Hhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Q ss_pred HHHHHhhcCCCcChHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC
Q 000049 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD---DDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS 2440 (2629)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~---~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~ 2440 (2629)
++.++.. ...+...........+...+.|. ....+......++-+..++..+....+++++..|..+
T Consensus 1301 l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~~lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~ 1370 (3550)
T KOG0889|consen 1301 LRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHNNLSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLED 1370 (3550)
T ss_pred HHhhhhc-cccccHHHHHhhHHHHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.56 Score=58.73 Aligned_cols=129 Identities=21% Similarity=0.229 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCCccC--chHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHhccC-ChhHHHHHHHHhhhcCCHHHHHH
Q 000049 2293 LSTLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALST-RVDPLVGDLLSSLQVSDAGIREA 2368 (2629)
Q Consensus 2293 l~~L~~L~~~~~~~l~p--~lp~L~~~~~-k~L~d~~~~vR~~Aa~aLg~l~~~~~-~~~~ll~~Ll~~l~~~d~~vr~~ 2368 (2629)
|.....+++.....+.+ .+..+...++ .++..++..+|..|..|||-..-+.. ....+++.+...++..+..+|..
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~ 83 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKIT 83 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33445555555544555 3336555544 78888999999999999999976654 34677888888887678999999
Q ss_pred HHHHHHHHHhhcCCCcCh--------HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 000049 2369 ILTALKGVLKHAGKSVSS--------AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2629)
Q Consensus 2369 ~l~AL~~vi~~~g~~~~~--------~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2629)
+++++..++...|..... .....+..++.+.+.+.+++++..+++.+++|...
T Consensus 84 al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 84 ALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999999887765422 23468888999999999999999999999997643
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.44 Score=55.19 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcC--CCChhHHHHHHHHHHHHHHhchhhhhhhH
Q 000049 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVG--DNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2629)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~--d~~~~vR~~a~~~L~~l~~~~~~~~~~~~ 2151 (2629)
.-+.++.+.+.+++...|-.+..+++++-. + .-++.|.+.+. .+++.+|..|+.+||.++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s---~----~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQS---P----AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccc---h----hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------
Confidence 457778888888888888888888887743 2 23344444442 4678999999999999985
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000049 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2629)
Q Consensus 2152 ~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~ 2184 (2629)
++.+..|...++|+++-|++.+.-+|.-.-...
T Consensus 250 e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 250 EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 467788888999999999999888887664433
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.19 E-value=7.3 Score=51.30 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---hcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCch
Q 000049 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~---l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
..++..++-+++.+...++..||...+..+..++.. ..+.-+..+...+...+.+..+.+|..|+.+|..+-.. |.
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~ 158 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PK 158 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CC
Confidence 356778899999999999999999999999988873 34445688888899999999999999999998877532 11
Q ss_pred hhhhhccchHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccC
Q 000049 1492 QLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTV 1569 (2629)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~ 1569 (2629)
.-. -.++..+..++ +|++++||.+|..++..=. ...|.++....|-+...|. .+..+.. +. ..
T Consensus 159 dee---~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn---------sTlp~IveRarDV~~anRrlvY~r~lp-ki--d~ 223 (892)
T KOG2025|consen 159 DEE---CPVVNLLKDLIQNDPSDEVRRAALSNISVDN---------STLPCIVERARDVSGANRRLVYERCLP-KI--DL 223 (892)
T ss_pred CCc---ccHHHHHHHHHhcCCcHHHHHHHHHhhccCc---------ccchhHHHHhhhhhHHHHHHHHHHhhh-hh--hh
Confidence 100 12344444444 6999999999886654222 1234444444455554542 2222211 00 11
Q ss_pred ChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHH-HhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~-l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
..-+...-+-.+..++.|++..+|.++.+.+.. ..... + ..++..|..+=.+.+.+|+..+.+++-.
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-D--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-c--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 112334556678889999999999998887643 22211 1 1244444443335566888888887765
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.011 Score=45.60 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.8
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
++|.++++++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.86 E-value=4.9 Score=53.20 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCCh
Q 000049 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2629)
Q Consensus 1672 ~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2629)
...+.-+++-+..+...++. .-+..+..++..+.+.+..+|..++..|..+|+.-++ |+..+...+.+.|..++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccH
Confidence 44556677777777665533 2355677888899999999999999888888876443 788899999999987776
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhh
Q 000049 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2629)
Q Consensus 1752 ~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~ 1806 (2629)
.....+-.++..++..-+...+..++..+... ...+..+|..++..+..-+..+
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhC
Confidence 66677777777777665555455555555421 1234568888888776665544
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.4 Score=53.62 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=149.3
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000049 1742 ILDGLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2629)
Q Consensus 1742 ll~~L~d~~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~ 1816 (2629)
+-.+|.++++.+|..++..+..++..++.+ .+..++..+.+.+. +|..-..++..+..++.. ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~------- 73 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF------- 73 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC-------
Confidence 345678889999999999999999877643 45556666666663 344444445666555421 110
Q ss_pred CCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhh--ccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHh
Q 000049 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2629)
Q Consensus 1817 ~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L 1894 (2629)
+.+....++..++.. .......+|..+.+++..+..+....+...-+.++..+++.+
T Consensus 74 ---------------------~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~ 132 (262)
T PF14500_consen 74 ---------------------SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI 132 (262)
T ss_pred ---------------------ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh
Confidence 000111223333221 123345689999999999998877777666677777777777
Q ss_pred c-CCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhh----cC----CCChhHHHHHHHHHHHHHHhhchhhHHHhHH
Q 000049 1895 A-SSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRG----LK----DPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2629)
Q Consensus 1895 ~-~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~----L~----d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2629)
. ++++..-..+...+..+....... ....+...+.-. .+ |+..=.|.....+|...+... ..|.+
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-----~~fa~ 207 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-----PLFAP 207 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-----HhhHH
Confidence 6 567877777887777777665422 333444433322 11 222223444444554443321 12446
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcc
Q 000049 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013 (2629)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~ 2013 (2629)
..+|.+.+-|....+.++..+.+++......+|...+.++...+.+.|+
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999998777777666665554
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.3 Score=58.69 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--c
Q 000049 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--R 1412 (2629)
Q Consensus 1336 ~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~--~ 1412 (2629)
.+-++.++..|...++...+..+...++..+... ..+.+...+.++.+...+.++ ++..|.-|+.++..++.... .
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHH
Confidence 3455777777777777778888888887765421 223334456788888888887 79999999998888775433 2
Q ss_pred CchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCch
Q 000049 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
.++.|+.+++..+... .-+..++.++..++..+.-.-. .+-+...+|.++..|..++-.+|..++.+|..++... .
T Consensus 90 ~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~ 166 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP-D 166 (254)
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-H
Confidence 3556666666655443 2355788777777776632111 1234667888898898888899999999999888642 2
Q ss_pred hhhhhc-cchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcCc
Q 000049 1492 QLSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1492 ~l~~~L-~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
.....+ .+..+.++.+++.. +.++-..+..-+.++.+.++.
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 111111 24555666666654 567777777777888777664
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.80 E-value=3.9 Score=55.03 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=63.7
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHh
Q 000049 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 1688 (2629)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~-~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~ 1688 (2629)
+.+...++..++.+..-+..++..||..+++.+..+-..+... ...-=+..|++..++.. +..+|.-+..-+..-...
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 3466677778888888888999999999999999998877652 22211445666666655 444555443333333334
Q ss_pred hChhHHHhHhHHHHHhhcC
Q 000049 1689 LGTVYFEHILPDIIRNCSH 1707 (2629)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~ 1707 (2629)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 4444446788999888764
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.4 Score=57.57 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=119.4
Q ss_pred CChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhc----CC-CChhHHHHHHHHHH
Q 000049 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGV----GD-NQASIRRSSAYLIG 2137 (2629)
Q Consensus 2066 ~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l----~d-~~~~vR~~a~~~L~ 2137 (2629)
.++.|+...++..|+..+..+....-+...+|+.+++....+ +....+++.|...+ ++ .||.--....++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 456778888888888887432212223345566555544332 33444444443332 22 34444445555555
Q ss_pred HHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCccc
Q 000049 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217 (2629)
Q Consensus 2138 ~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 2217 (2629)
.+.+.....-...+..+ -...+-.+..++...-.++.|.....+.+.++...
T Consensus 98 ~lir~~~~~~~~~v~~~---------------E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~------------- 149 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQF---------------EEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP------------- 149 (435)
T ss_dssp HHHHHS-GGGHH---HH---------------HHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-------------
T ss_pred HHHHhccCCChhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------
Confidence 55443221111111111 11222223333333333445544444444443221
Q ss_pred ccCCCCcccchhhHHHHHHHHhcCCHHHH---HHHHHHHHHHHhhcChhhh--hhchhhhhHHHHHHhcCCCCHhHHHHH
Q 000049 2218 IPGFCLPKALQPLLPIFLQGLISGSAELR---EQAALGLGELIEVTSEQSL--KEFVIPITGPLIRIIGDRFPWQVKSAI 2292 (2629)
Q Consensus 2218 l~g~~l~k~l~~ilp~ll~~L~~~~~~~r---~~aa~~L~~l~~~~~~~~l--~p~v~~i~~~Li~~l~~~~~~~vk~~a 2292 (2629)
+-..|+....++|.++.-- -++.+ -.....|..++++.+ ..+ .+++..+.|..-+++..+.++ ..+
T Consensus 150 --~~~~p~~y~~L~~~Ll~p~---lWe~~gniPalvrLL~a~i~k~~-~~i~~~~~l~~iLgvFQkLi~sk~~D---~~g 220 (435)
T PF03378_consen 150 --SSPLPDAYKQLFPPLLSPA---LWERRGNIPALVRLLQAYIKKDP-SFIVANNQLEPILGVFQKLIASKAND---HYG 220 (435)
T ss_dssp ----S--TTTGGGHHHHTSGG---GGGSTTTHHHHHHHHHHHHHHHG-GG----S-CHHHHHHHHHHHT-TTCH---HHH
T ss_pred --CCCCcHHHHHHHHHHcCcc---hhccCCCcCcHHHHHHHHHHhCc-hhhcchhhHHHHHHHHHHHHCCCCcc---hHH
Confidence 0112344455555554211 11111 234556677776665 333 356778888777888766433 457
Q ss_pred HHHHHHHHHhcCC-CccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Q 000049 2293 LSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL 2340 (2629)
Q Consensus 2293 l~~L~~L~~~~~~-~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l 2340 (2629)
++.|..++..++. .+.||+++++..++..|+.. .+..+.....-++.+
T Consensus 221 F~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 221 FDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 8899999999987 58999999999999999875 555555555555544
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.12 Score=67.64 Aligned_cols=188 Identities=14% Similarity=0.215 Sum_probs=138.4
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
+-..++|.|.+.+...+..+|....+-+......++. ..+.+++.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4567899999999999999999998888888776654 235678999999999999999999999999999999998
Q ss_pred CCc-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHh-HHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1653 ~~~-~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ll-p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
..+ .+++..+... +.|+....|.....+++.+...+....-..++ -...+.+.++-..-|.++...+......+..
T Consensus 403 ~~Ln~Ellr~~ar~-q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLARL-QPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHHhh-CccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 743 4666655444 33444557887777787776655433322222 2333456677777888888777766665543
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
...-.+|+|.+.....|++..||..|..++..+...
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 233456888888888899999999998888776543
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.13 Score=67.09 Aligned_cols=256 Identities=16% Similarity=0.137 Sum_probs=162.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHH
Q 000049 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2629)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~ 2313 (2629)
++..+.-.+.+.|..-...|.+.++..+. .+..+ .+.+.|+..+.-..........+.-++..+. -.+|...
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~~~pe-~i~~~--kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld-----~~eyq~~ 330 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLDNFPE-EIIAS--KVLPILLAALEFGDAASDFLTPLFKLGKDLD-----EEEYQVR 330 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhhhH-HHHHH--HHHHHHHHHhhccccchhhhhHHHHhhhhcc-----ccccccc
Confidence 45556666777777777777777766663 33222 2333333333221111111111111222222 2346677
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhc-c--CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHH
Q 000049 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSAL-S--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390 (2629)
Q Consensus 2314 L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~-~--~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~ 2390 (2629)
+.+.+++.+..+++.+|..-..-+-.++.. . ..-++++|.+..++.++++.+|+..++++..++.+.+... .-.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~---Ln~ 407 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN---LNG 407 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh---hcH
Confidence 888999999999999998877766666442 2 2357899999999999999999999999999999887752 234
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHH-HHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh
Q 000049 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE-LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2629)
Q Consensus 2391 ~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~-ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 2469 (2629)
.++..+...-.|.+.+.|.....|+|+++....+..-..++.. +.....++-...|...+..+.+.-...+.. ..
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~----~v 483 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS----EV 483 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh----hh
Confidence 5555555555577888999999999999987654332222221 111123333334655666666654444433 33
Q ss_pred HHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhh
Q 000049 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQI 2504 (2629)
Q Consensus 2470 ~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~ 2504 (2629)
...+++.++....+++..+|+.|..++...+....
T Consensus 484 a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 484 ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 45677788888888999999999999887766543
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=95.42 E-value=3 Score=54.49 Aligned_cols=369 Identities=13% Similarity=0.176 Sum_probs=180.3
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCC
Q 000049 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223 (2629)
Q Consensus 2144 ~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l 2223 (2629)
+.++.++...++..|+..++.+...=-+-...|+-+++........|.....+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il--------------------------- 69 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL--------------------------- 69 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH---------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH---------------------------
Confidence 46788999999999999886432211111233333433333322222211111
Q ss_pred cccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcCh---hhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH
Q 000049 2224 PKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSE---QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2629)
Q Consensus 2224 ~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~---~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2629)
..+..++.....++ ++.--....++++.+++.+.. +.+..+-..+++++..+|... -.+.-.-+++.|+.+
T Consensus 70 ----~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~L 144 (435)
T PF03378_consen 70 ----QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQD-VQEFIPYVFQILAQL 144 (435)
T ss_dssp ----HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 11222222222333 344445678999999987653 234466677888888888763 456677889999999
Q ss_pred HHhcC-CCccCchHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHhc-------cCChhHHHHHHHHhhhcCCHHHHHHHH
Q 000049 2300 IRKGG-IALKPFLPQLQTTFIK-CLQDSTRTVRSSAALALGKLSAL-------STRVDPLVGDLLSSLQVSDAGIREAIL 2370 (2629)
Q Consensus 2300 ~~~~~-~~l~p~lp~L~~~~~k-~L~d~~~~vR~~Aa~aLg~l~~~-------~~~~~~ll~~Ll~~l~~~d~~vr~~~l 2370 (2629)
++..+ ..+-+..-+|.+.++. .+.+....+ -.....|..++.. .+++.+++.-.-..+.+...+ ....
T Consensus 145 le~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF 221 (435)
T PF03378_consen 145 LELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGF 221 (435)
T ss_dssp HHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHH
T ss_pred HHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHH
Confidence 98776 3333333344444332 222221112 1122222222221 245566665554444332111 2245
Q ss_pred HHHHHHHhhcCCCcChHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhcCChhHHHH------------HHHHH-Hh
Q 000049 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLAD------------LLQEL-LN 2436 (2629)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~------------~l~~l-l~ 2436 (2629)
+-|..++...+....++|.+.|+.++...+++ ..+.........++.++...+++.+.. ++..+ +.
T Consensus 222 ~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp 301 (435)
T PF03378_consen 222 DLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLP 301 (435)
T ss_dssp HHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcC
Confidence 66777788777765588999999999998875 456655555555565554444443322 22221 11
Q ss_pred hcC-CCCchhhHhHHHHHHHHHhhCCccccC-ChhHHHHHHHHHhhhcCCChhHH---HhH-----HHHhHHHHhhhhhc
Q 000049 2437 LAS-SPSWAARHGSVLVFATFLRHNPSAISM-SPLFLSILDRLKSSLKDEKFPLR---EAS-----TKALGRLLLHQIQS 2506 (2629)
Q Consensus 2437 ~~~-~~~~~~~~~~~~~l~~~l~~~p~~~~~-~~~~~~i~~~l~~~~~~~~~~ir---~~a-----~~alg~ll~~~~~~ 2506 (2629)
... -.....|..++.++..++.+++...-. ...|..+++.+...+........ +.. ....|+-..+.
T Consensus 302 ~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs--- 378 (435)
T PF03378_consen 302 DLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFS--- 378 (435)
T ss_dssp HGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG---
T ss_pred chhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhH---
Confidence 111 112234666888888888776643222 34666677777665544332111 000 00011100000
Q ss_pred CCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHH
Q 000049 2507 GPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2629)
Q Consensus 2507 ~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~ 2557 (2629)
.+...=..=.-.+. +-.|+|.-....+..+.+.+|..+.+.+..
T Consensus 379 ------~L~~a~~~~~Dp~~-~i~d~~~~~~~~L~~~~~~~~G~~~~~i~~ 422 (435)
T PF03378_consen 379 ------KLAFAGKKPRDPLP-EIPDPKQYLAQSLSKLSQAHPGKIPPLIQQ 422 (435)
T ss_dssp --------GGG------S-T-TTTCHHHHHHHHHHHHHHHTTSSHHHHHGG
T ss_pred ------HHHhCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCchHHHHHh
Confidence 00000000001111 144678888888999999888776665544
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.29 E-value=17 Score=48.77 Aligned_cols=289 Identities=15% Similarity=0.083 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCC
Q 000049 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2629)
...|..|+..|...++......+. .+....+..+..++....|++++..+..+.++-.......-......+-..-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 467888899898888888776664 566777778877767788999999888888765431111111222222112122
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccC---------------------------ChhhhHHHHHHHHH
Q 000049 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~r~~a~~~L~~ 1484 (2629)
++-..|-.+..++..=...+.. ....+.|.+...+..- +-+.-..-+.++..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2223333333333222222211 1234444444433210 00000111222333
Q ss_pred HHhhCchhh-hhhccchHHHHhhhhcCC-CHHHHHHHHHHHHHHhh--hcCchhHHhHHHHHHhccCCCC--hhHHHHHH
Q 000049 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKYSLD 1558 (2629)
Q Consensus 1485 la~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~--~~~~~~i~~lvp~Ll~~l~d~~--~~~r~al~ 1558 (2629)
+..-....+ ...+..++..++.++..+ ++..=+++...+..+.. .+++..+..++..|.....-.+ ...-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 332211111 233455666666665443 33334677777777765 3455567778888777654331 11113444
Q ss_pred HHHhccccccCChhhhhhHHHHHHHhh------cCCCHHHHHHHHHHHHHHhhhcCCCCcccchHh--hhHHHHHHHhcC
Q 000049 1559 ILLQTTFVNTVDAPSLALLVPIVHRGL------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVD 1630 (2629)
Q Consensus 1559 ~L~~~~~~~~~~~~~l~~i~p~L~~~L------~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d 1630 (2629)
.|..+. .... .+-.+...+ ..++..+-+.|...++.+....+......-... .+++.+...+..
T Consensus 241 nL~~S~----~g~~----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 241 NLLKSH----LGHS----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred HHHcCc----cHHH----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 443321 1112 233333333 123566677888888887765322111111123 489999999997
Q ss_pred CCHHHHHHHHHHHHHHH-hhhC
Q 000049 1631 PIPEVRSVAARAIGSLI-RGMG 1651 (2629)
Q Consensus 1631 ~~~~VR~~A~~aL~~l~-~~~g 1651 (2629)
+++.|-......+..+. ..++
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhh
Confidence 76666666666666666 4444
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=6.9 Score=59.18 Aligned_cols=296 Identities=12% Similarity=0.018 Sum_probs=163.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc-------hhhhHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhchhhHHHhHHHH
Q 000049 1895 ASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2629)
Q Consensus 1895 ~~~~~~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2629)
.+++..++..|...|..+..++-+. +...++..+...+. ..+.++|..+..++..++...+ ..+..-++.+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-~nIkSGWktI 1225 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-NNVKSGWKSM 1225 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhcCcHHH
Confidence 4556778888888888877655321 23456655555444 4678999999999999887765 4567788999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------hhhhhhHHHHHHhccCc---CchhHHHHHHHHHHhhhccCc
Q 000049 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAV 2036 (2629)
Q Consensus 1967 l~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-------~~~~~ilp~Ll~~L~~~---~~~~~aL~~L~~il~~~~~~i 2036 (2629)
+..+..+..+.++.+-..|.+.+..++..+-. ..+.+++..+.+.-... +.+-.+++.++.+...-.+.-
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999888898888888888888777654322 23333333333322222 222344444443321000000
Q ss_pred Ccccch-h-hhcCCCchh-HHHHHHHHHHHh-CCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc----c
Q 000049 2037 LPHILP-K-LVHLPLSAF-NAHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----E 2108 (2629)
Q Consensus 2037 lp~Lip-~-L~~~~~~~~-~~~aL~~La~~~-g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~ 2108 (2629)
+....+ . ...++.... ............ ......+.=.++-.|.+...++..+||..|+..+-.++..+|. +
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 000000 0 000000000 000000000000 1111223333445555555688899999999988888776653 2
Q ss_pred c----HHHHHHHHHhhcCC-------------------C-----Ch--hHHHHHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 000049 2109 G----VESLVSELLKGVGD-------------------N-----QA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 2158 (2629)
Q Consensus 2109 ~----~~~ll~~Ll~~l~d-------------------~-----~~--~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~L 2158 (2629)
. ++.++-.++..++. + .| ..-..|+..+..++.+.-..+...++.++..|
T Consensus 1386 ~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll 1465 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLL 1465 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33333333333221 0 01 22333444455554444344556677777777
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcCcccccc
Q 000049 2159 IVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191 (2629)
Q Consensus 2159 l~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~ 2191 (2629)
..++..+++.+......||..++...+...-+.
T Consensus 1466 ~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~ 1498 (1780)
T PLN03076 1466 VSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDE 1498 (1780)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 788888899999999999999998877654443
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.21 E-value=12 Score=50.59 Aligned_cols=390 Identities=20% Similarity=0.285 Sum_probs=190.9
Q ss_pred chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-hhHHhHHHHHHhccCCCC--hhHH-HHHHHHHhccc
Q 000049 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTF 1565 (2629)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~lvp~Ll~~l~d~~--~~~r-~al~~L~~~~~ 1565 (2629)
.+.+...+...+|.++..+..+|..||....+.+..+-+.++. +.++==+..|++...+|+ ..+| .++--+ + .-
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi-~-~g 91 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYI-E-MG 91 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHH-H-Hh
Confidence 4466777778888888888999999999999999998887765 666544566777777776 3344 232111 1 12
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCH---HHHHHHHHHHHHHhhhcCCCCc---ccchHhhhHHHHHHHhcCCCHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSA---ETKKKAAQIVGNMCSLVTEPKD---MIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~---~vr~~a~~~l~~l~~~~~~~~~---l~~~l~~ll~~L~~~L~d~~~~VR~~A 1639 (2629)
....+...-..++|.+.+++..... .........+.-+++.....+. ..+.....- -...+.+ .......
T Consensus 92 ~~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~--~~~~l~~--~~~~~~l 167 (501)
T PF13001_consen 92 FDRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFR--DSLGLSD--FCDDVFL 167 (501)
T ss_pred hhcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHH--HHHhhcc--hHHHHHc
Confidence 2334555666788888888874422 2222222222333333222111 000000000 0000111 0000111
Q ss_pred HHHHHHHHh----------hhCCCCchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHHHhhc
Q 000049 1640 ARAIGSLIR----------GMGEENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCS 1706 (2629)
Q Consensus 1640 ~~aL~~l~~----------~~g~~~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~ 1706 (2629)
+.-.+.+.. .......+.+-..-.+.+.... ....+....+.=-.+++-+....+ .+.++.++-...
T Consensus 168 ~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsa 247 (501)
T PF13001_consen 168 APWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASA 247 (501)
T ss_pred chhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEe
Confidence 111111100 0000001111110001111100 000111111000011111111111 234445555556
Q ss_pred CCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHh-hcC------CCChhHHHHHHHHHHHHHHH-hhhchhhhHHH
Q 000049 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLA------DENESVRDAALGAGHVLVEH-YATTSLPLLLP 1778 (2629)
Q Consensus 1707 ~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~-~L~------d~~~~VR~~al~al~~iv~~-~~~~~i~~llp 1778 (2629)
+++..|...+-..+..+...+.+ .+.+..++...+. ++. --...+|...+.- +++. .+....+..+.
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~ed--~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~---L~kS~~Aa~~~~~~~~ 322 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLED--PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSL---LSKSVIAATSFPNILQ 322 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHH---HHHhHHHHhCCccHHH
Confidence 67778888888887777665443 2333444444331 100 1123344433333 2222 12223455666
Q ss_pred HHhhccCCC--chHHHHHHHHHH---HHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc
Q 000049 1779 AVEDGIFND--NWRIRQSSVELL---GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2629)
Q Consensus 1779 ~l~~~l~d~--~~~vR~sa~~ll---~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~ 1853 (2629)
.+..++.+. +.|.|..+++.+ .....+++ ..++..++. -++..++...
T Consensus 323 i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~-----------------------~~~l~~l~~----~i~~~g~p~~ 375 (501)
T PF13001_consen 323 IVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS-----------------------PQILKLLRP----VILSQGWPLI 375 (501)
T ss_pred HHhccccCCccccccchhcchhhhcchHHhhhcC-----------------------HHHHHHHHH----HHHhcCcccc
Confidence 777788777 778888888777 44332211 112222221 1222222222
Q ss_pred --------cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1854 --------SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2629)
Q Consensus 1854 --------~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~ 1918 (2629)
...+...|..+.+++|.++...|..+..-+ .++..++..+.++..++|...-.||+.+...+..
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 224567999999999999999887664332 3456677777888999999999999998877643
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.52 Score=60.13 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhcc-----c----------
Q 000049 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGE-----R---------- 1919 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~-----~---------- 1919 (2629)
...|.+|.+.+..+++..++.+.+.+...+..++.... +.+|..+..|...++.+..+... .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 46899999999999988777666666555555544322 45788889999999988755421 0
Q ss_pred -hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000049 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2629)
Q Consensus 1920 -~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al 1989 (2629)
+...++|-|. .-.+..|-+|..+|..+...-...+ .+.+..++|.+..+|.+++.-|+..|+.|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1234455554 2224557778888877765433222 346688999999999999999999887664
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.93 Score=56.80 Aligned_cols=113 Identities=20% Similarity=0.143 Sum_probs=82.9
Q ss_pred HHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh
Q 000049 2391 RVY-SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2629)
Q Consensus 2391 ~i~-~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 2469 (2629)
.++ .++...+.+.+..+|+.+.+|+|-.+.... +-....+.-+......++...+..+..++..++..++...+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 444 555578888999999999999999887655 344455554444444446566767777888877766655543322
Q ss_pred -------HHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhh
Q 000049 2470 -------FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQI 2504 (2629)
Q Consensus 2470 -------~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~ 2504 (2629)
...+...+...+.++++.++..+++++.+++..+.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 35788999999999999999999999999988764
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=57.65 Aligned_cols=126 Identities=22% Similarity=0.309 Sum_probs=77.1
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHh
Q 000049 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2629)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2629)
.-++.|++++||.+|+.++..+.+..+ +++ ..+ ++...... .|... ...+..++-.+.++
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L-------~~A-e~~~~~~~---------sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGSK-PFL-------AQA-EESKGPSG---------SFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHccH-HHH-------HHH-HhcCCCCC---------CcccH--HHHHHHHHHHHHHH
Confidence 345789999999999999999987532 221 111 11110000 11110 11223333333333
Q ss_pred ----h-cCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1585 ----L-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1585 ----L-~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
+ .+.+..+-....+++..+.....-.+--..+++.++..+...+.+.+++||..+..++|.+....
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 2 34456677778888888776432222223467788888888889999999999999999998753
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.53 Score=60.68 Aligned_cols=150 Identities=25% Similarity=0.367 Sum_probs=112.8
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc----ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~----l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
...-|.+.++|+-++..||..|+..+-++.-.. +|+. +...++.=...+..+|.|+.|.||..|...+..+...+
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 456688999999999999999999998877653 4432 23334444456788899999999999998887776643
Q ss_pred ----CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh-hChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 000049 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2629)
Q Consensus 1651 ----g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~-~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~ 1725 (2629)
++....+++..+.+.+..++...+|.....++..++.. .....++.++|.+-..+.+....||-++..++..+-.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 33345667777777777777677899999998887653 2233568888888788889999999998888876654
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.2 Score=62.56 Aligned_cols=215 Identities=15% Similarity=0.154 Sum_probs=107.7
Q ss_pred hhhhhHhhhccchHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHH
Q 000049 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALL 1401 (2629)
Q Consensus 1323 ~L~~l~~~~~~~~~~ll~~ll~~L~~~-~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~ 1401 (2629)
.+..|++.++....+-+..+.+.+... .....|..-..+|... |-. .-+.++.+.+.+++-. .. .|..
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~a----GT~-----~av~~i~~~I~~~~~~-~~-ea~~ 416 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQA----GTN-----PAVKFIKDLIKSKKLT-DD-EAAQ 416 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-----SH-----HHHHHHHHHHHTT-S--HH-HHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHc----CCH-----HHHHHHHHHHHcCCCC-HH-HHHH
Confidence 344455555444444455566655443 2233444333333322 211 3344566666554222 22 2334
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-------------hHHhhHHHHHhhhc
Q 000049 1402 AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-------------GVKLVLPSLLKGLE 1468 (2629)
Q Consensus 1402 al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-------------~v~~ilp~Ll~~L~ 1468 (2629)
.+..+......--..++..+.+.+-......++.+|.+|+.++..+....-.. ..+.+++.+...+.
T Consensus 417 ~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 496 (618)
T PF01347_consen 417 LLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELK 496 (618)
T ss_dssp HHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHH
Confidence 45555443322122333333333221112246789999988888776632111 22455565555554
Q ss_pred ----cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC---CHHHHHHHHHHHHHHhhhcCchhHHhHHHH
Q 000049 1469 ----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2629)
Q Consensus 1469 ----~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~---~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2629)
..+-..+..++.+||++.. +..++.+..++.+. ...+|.+|++||..++.... ..+.+.
T Consensus 497 ~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~----~~v~~~ 562 (618)
T PF01347_consen 497 EAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP----EKVREI 562 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----HHHHHH
T ss_pred HHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----HHHHHH
Confidence 3455677888999998853 56677777777665 78999999999998865543 233344
Q ss_pred HHhccCCCCh--hHH-HHHHHHHh
Q 000049 1542 LLMGLTDPND--HTK-YSLDILLQ 1562 (2629)
Q Consensus 1542 Ll~~l~d~~~--~~r-~al~~L~~ 1562 (2629)
++..+.|+.+ .+| .|+..+..
T Consensus 563 l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 563 LLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChhHHHHHHHHHHh
Confidence 4444444433 466 56665543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.6 Score=55.79 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHhcc-----------
Q 000049 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLGR----------- 1412 (2629)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-----~~~~~~~R~~Al~al~~La~~~~~----------- 1412 (2629)
++....|++|...|..+++..+..... .++..+...++ ...+|+.+++|+..+++++.....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 344466777777788888876655443 34455555543 345899999999999999964311
Q ss_pred -CchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHH
Q 000049 1413 -LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2629)
Q Consensus 1413 -~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~ 1481 (2629)
.+..++. +++|-+. .-.+..|.+|..|...+..+-..+++.....++|.++..|.+++.-++..|+.+
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 1233333 4556555 334667889999999888888889988889999999999998887666555443
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.31 Score=54.48 Aligned_cols=116 Identities=18% Similarity=0.272 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh--chhh
Q 000049 1885 VLMNTLISSLASSSSERRQVAGRALGELVRK-LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA--GKSQ 1958 (2629)
Q Consensus 1885 ~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~-~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~--~~~~ 1958 (2629)
.+++.+++.+.+...-.|..|.+.+.+++.. .++. ++|.+++.+..+|+++++++...++.+|..++... -++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4455555666777777899999999999998 3443 57888999999999999999999999988874322 2477
Q ss_pred HHHhHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHhChhh
Q 000049 1959 LLSFMDELIPTIRTALCD-----------SILEVRESAGLAFSTLFKSAGMQA 2000 (2629)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d-----------~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2629)
+.+|+.+++|.+....+. ....+++...+++..+-...|+++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 899999999998733221 234455555666666666666544
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.27 Score=55.50 Aligned_cols=136 Identities=23% Similarity=0.252 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhhhHHHHHHHH------------HHHhcCCCHHHHHHHHHHHHHHHHHhccc------
Q 000049 1859 SVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTL------------ISSLASSSSERRQVAGRALGELVRKLGER------ 1919 (2629)
Q Consensus 1859 ~VR~aA~~~l~~l~~~-~~~~l~~~l~~Ll~~L------------~~~L~~~~~~~R~~A~~~L~~lv~~~~~~------ 1919 (2629)
.||..|+.++..+++. .++.+..|++.++|.- .-.+.|+++.+|..|+.++..+.+....-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3899999999999998 6777888888877642 33456899999999999999998654210
Q ss_pred -------h------hhhHH----HHHhhhcC-CCChhHHHHHHHHHHHHHHhhchhhH-HHhHHHHHHHHHHHhcCCcHH
Q 000049 1920 -------V------LPSII----PILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILE 1980 (2629)
Q Consensus 1920 -------~------l~~ll----p~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~ 1980 (2629)
+ +..++ ..|...+. +.++.+-...+.+++.++....-..+ .+++..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 11111 22223344 34566777778888877765543333 456678888888888889999
Q ss_pred HHHHHHHHHHHHHH
Q 000049 1981 VRESAGLAFSTLFK 1994 (2629)
Q Consensus 1981 VR~~A~~al~~l~~ 1994 (2629)
|+..+..+++.+..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888887764
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.85 Score=57.36 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=86.2
Q ss_pred hccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhh
Q 000049 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930 (2629)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~ 1930 (2629)
..+|.+..||++|+-+++-++-..+.. ++..++.|. +-|..+|...+-+||-.+...|....- .+|..
T Consensus 560 avsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~---diL~~ 628 (926)
T COG5116 560 AVSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVAT---DILEA 628 (926)
T ss_pred ecccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHH---HHHHH
Confidence 368999999999999998776554432 223333333 567889999999999888877776433 34445
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHH
Q 000049 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2629)
Q Consensus 1931 ~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~ 1980 (2629)
.+.|+..-|||++|.+++-++.++.+ .+.+.+..|...+.+.+.|.+++
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~-~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNP-ELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCc-ccChhHHHHHHHHHHHHhhhhHh
Confidence 56688889999999999988877764 46667788888888888877654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.36 Score=64.91 Aligned_cols=219 Identities=21% Similarity=0.170 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhccCC------hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcC-hHHHHHHHHHHHHhh
Q 000049 2328 TVRSSAALALGKLSALSTR------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVS-SAVKIRVYSVLKDLV 2400 (2629)
Q Consensus 2328 ~vR~~Aa~aLg~l~~~~~~------~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~-~~~~~~i~~~L~~~l 2400 (2629)
.-|.+|...||++..++|- --.++|..++.|+++..+.|....--+..|+.-- ++.. +-+.+.........+
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEe
Confidence 3577788888888655441 2257888888888887888877666666665422 1111 111121122222223
Q ss_pred cC---CCHHHHHHHHHHHHHHHhcCChhHHH----HHHHHHHhhcCC-CCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000049 2401 YH---DDDHVRVSAASILGIMSQCMEDGQLA----DLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2629)
Q Consensus 2401 ~~---~~~~vr~~aa~~Lg~L~~~~~~~~~~----~~l~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2629)
.+ -+++-|.++|..|..++..++-.+-. .++...+..+.+ +.+-.|+..+.+|..+-.+++..-+. +..+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~ 642 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDN 642 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-ccccc
Confidence 33 14689999999999999887754311 233323333444 35777888888998888877765332 23345
Q ss_pred HHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCc-------------hhhHHHH----HHHHhhcCCCCHHHHHH
Q 000049 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT-------------TVVVDIL----ASVVSALHDDSSEVRRR 2535 (2629)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~-------------~~l~~~l----~~l~~~l~~~~~~vr~~ 2535 (2629)
..+.+...+.+.-+++|.+|+.|+|.++.......++.. ......+ -.++..++|.++-||..
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 677888888999999999999999999986311100000 0122223 36677789999999999
Q ss_pred HHHHHHHHHhhCc
Q 000049 2536 ALSALKSVAKANP 2548 (2629)
Q Consensus 2536 al~~l~~~a~~~~ 2548 (2629)
.+..+..++..+-
T Consensus 723 v~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 723 VVVALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHHHHhhH
Confidence 8888887776543
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=11 Score=57.24 Aligned_cols=299 Identities=12% Similarity=0.096 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHH-hccC-------Ch-hHHHHHH
Q 000049 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTT----FIKCLQDSTRTVRSSAALALGKLS-ALST-------RV-DPLVGDL 2354 (2629)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~lp~L~~~----~~k~L~d~~~~vR~~Aa~aLg~l~-~~~~-------~~-~~ll~~L 2354 (2629)
-|...+.-|.+++..--..++-..+.+|.. |.+.-.+++..++.-|...|.++. ++-. ++ ..++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 355566666665543323344445665554 444434456778888888887773 2211 11 2455655
Q ss_pred HHhhh-cCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc----CC---hhH
Q 000049 2355 LSSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC----ME---DGQ 2426 (2629)
Q Consensus 2355 l~~l~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~----~~---~~~ 2426 (2629)
...++ ..+.++|+.+++++..++...+.++.. -=..|+.++.....++++.+-..+-+++..+... ++ .+.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 55554 456899999999999999887766622 3345555555555566666666666666655422 22 233
Q ss_pred HHHHHHHHHhhcCCCC-chhhHhHHHHHHHH---HhhCC------------------------cc---ccC----ChhHH
Q 000049 2427 LADLLQELLNLASSPS-WAARHGSVLVFATF---LRHNP------------------------SA---ISM----SPLFL 2471 (2629)
Q Consensus 2427 ~~~~l~~ll~~~~~~~-~~~~~~~~~~l~~~---l~~~p------------------------~~---~~~----~~~~~ 2471 (2629)
+..++.-+........ ...-..++..|..+ +.+.+ .. +.. ..+|-
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 3344433322211111 10111112122211 10000 00 000 13566
Q ss_pred HHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhc-CCCCchhhHH-HHHHHHhhcC------------------CCC--
Q 000049 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTTVVVD-ILASVVSALH------------------DDS-- 2529 (2629)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~-~~~~~~~l~~-~l~~l~~~l~------------------~~~-- 2529 (2629)
.++..+...+.+++++||..|+..+-+.+...+.. .|+.|..+.. +|-+++..++ +++
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 67777777788899999999999999888776654 4444433322 3444432221 111
Q ss_pred ------HHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhcc
Q 000049 2530 ------SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587 (2629)
Q Consensus 2530 ------~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~ 2587 (2629)
.+.-..|+..+..+-.+..+.+.+.|+.++..+..|+...|..+-...-.|+..+..-
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 2455567777777777777888889999999999999999988888888888877654
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.71 E-value=19 Score=46.45 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=114.1
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
..+.++-.+.+++..++..||..+++++..+...+++.++ .....++..+...+-|..+.||..|..++..+-+.-+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455667788899999999999999999998887655322 23455666677777799999999999999988764443
Q ss_pred CCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHH-HHHHHHHHhhhhhccch
Q 000049 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~-~a~~~l~~L~~~~g~~f 1731 (2629)
+ -......+...++++.+..+|+.+...+.. -....|-+++.+.+.+...|. -+..++..+.....-+.
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v---------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV---------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee---------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 3 233444666777888888888766433211 123456677777666554443 33344444433222222
Q ss_pred HhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000049 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2629)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2629)
.+. +. .+-.++.|.+.+|+.++.+++..
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 222 22 55567888888999888777653
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.61 E-value=21 Score=46.52 Aligned_cols=226 Identities=12% Similarity=0.238 Sum_probs=123.8
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA------------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~------------~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~ 1368 (2629)
++......++ ..+...++.+|+..+........ ..+++..++.-...++.+.+.+.+.-...+...
T Consensus 200 Li~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~ea 277 (559)
T KOG2081|consen 200 LITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEA 277 (559)
T ss_pred HHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHH
Confidence 3444444555 34566667777776665442211 122333333333345666555555544444432
Q ss_pred h------CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--------cCchhHHHHHHHHHHHHcCCCC-
Q 000049 1369 F------GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQV- 1433 (2629)
Q Consensus 1369 l------g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~--------~~~~~~v~~ilp~ll~~l~D~~- 1433 (2629)
. +++.. ..+++.+.-..... ++.+-+...-..-.+.+.+- ..|.||..+++..+.....=+.
T Consensus 278 f~~~i~~np~~~--l~~vellLl~~~h~-~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~ 354 (559)
T KOG2081|consen 278 FVVLISTNPEEF--LRIVELLLLVAGHN-DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPD 354 (559)
T ss_pred HHHHHhhCCCcc--hhHHHHHHHhccCC-chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCc
Confidence 1 12211 13444444333333 56555444443344443221 2478999999998887654221
Q ss_pred -----------HHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchH
Q 000049 1434 -----------VAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2629)
Q Consensus 1434 -----------~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv 1501 (2629)
..-|....+.++.+...++.. .++.+.-.+.+ ....|+...+++-.+..++...+..-...+|+++
T Consensus 355 ~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl 432 (559)
T KOG2081|consen 355 QFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVL 432 (559)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHH
Confidence 246777777777776655443 33444333333 4567999999999999998765544333344444
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-hhH
Q 000049 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI 1535 (2629)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i 1535 (2629)
..+.++ +....+|..++--+|.+.+.+.. |+.
T Consensus 433 ~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~~~p~~ 465 (559)
T KOG2081|consen 433 KLICNL--PEQAPLRYTSILLLGEYSEWVEQHPEL 465 (559)
T ss_pred HHHhCC--ccchhHHHHHHHHHHHHHHHHHhCcHH
Confidence 443332 22334999999999999887753 444
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.83 Score=55.89 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=119.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhH------HHHHHHHh
Q 000049 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP------LVGDLLSS 2357 (2629)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~------ll~~Ll~~ 2357 (2629)
.+.+-|..+++-|..+++.++....-.--..+..++..+.+++.++|..|+..+|..+.-.|.+.. .+..|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 356788899999999998876542211112345556688999999999999999999776665443 34567777
Q ss_pred hhc-CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCChhH--HHH-HH
Q 000049 2358 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LAD-LL 2431 (2629)
Q Consensus 2358 l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~--~~~-~l 2431 (2629)
+.. .+..+|..++.|+...|.+..+....-..-.=+..|...+.+ .+...++.+...++.+......+. +.. .+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 753 457899999999999998866554332222336677777877 466777889999999987655432 111 11
Q ss_pred HH-HHhhcCCCCchhhHhHHHHHHHHHhhCC
Q 000049 2432 QE-LLNLASSPSWAARHGSVLVFATFLRHNP 2461 (2629)
Q Consensus 2432 ~~-ll~~~~~~~~~~~~~~~~~l~~~l~~~p 2461 (2629)
+. +..+....++.....+..++...+...+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 21 2345556666666666666666665433
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.056 Score=41.74 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
++|.+.+.++|++|+||..|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999874
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.53 E-value=1 Score=50.80 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS-KLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV 2184 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~-~~~~~~~~~~il~~Ll~ll~d~d-~~V~~~a~~aL~~l~~~~ 2184 (2629)
..++.+...+.+.+.+.++..|-.++..++..++.. ..-+..+...+++.++..++.++ ..+.+.+..++..++...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 346777788888889999999999999999999887 45566888999999999998655 456788888888887543
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.52 E-value=21 Score=46.22 Aligned_cols=242 Identities=16% Similarity=0.197 Sum_probs=132.3
Q ss_pred cchHhhhHHHHHHHhcC------C-CHHHHHHHHHHHHHHHh------hhCCCCchhhHHHHHHHhccCCChHH-HHHHH
Q 000049 1614 IPYIGLLLPEVKKVLVD------P-IPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKSDNSNVE-RSGAA 1679 (2629)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d------~-~~~VR~~A~~aL~~l~~------~~g~~~~~~ll~~Ll~~L~~~~~~~~-R~~a~ 1679 (2629)
...++.++..+..-+.. | +..+-..|.+++|.+.. .+.++...-++...+..+.+...... .....
T Consensus 34 ~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l 113 (372)
T PF12231_consen 34 QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYL 113 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33444455544444432 2 56677889999998764 33334333456666666655443322 22222
Q ss_pred HHHHHHHHhhChhHH-----HhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChh
Q 000049 1680 QGLSEVLAALGTVYF-----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES 1752 (2629)
Q Consensus 1680 ~~L~~i~~~~g~~~l-----~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~ 1752 (2629)
..++. ..++...+ ..++. .+..+.+ +...+-...+.++..+...++..+..+...-+|.++..+-+....
T Consensus 114 ~~ls~--Q~f~~~~~~~~~~~~l~~-~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ 190 (372)
T PF12231_consen 114 WCLSD--QKFSPKIMTSDRVERLLA-ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKD 190 (372)
T ss_pred HHHHc--CCCCCcccchhhHHHHHH-HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 22221 12333222 22222 2222332 344455566777888887777777777777778888887777888
Q ss_pred HHHHHHHHHHHHHHHhhhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHH
Q 000049 1753 VRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2629)
Q Consensus 1753 VR~~al~al~~iv~~~~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~ 1831 (2629)
+|..|...+..+...++.. .+...+....+....+. +......+-+..++. +.++.-..-+...
T Consensus 191 ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~--------------~~~~~~~a~~iW~ 255 (372)
T PF12231_consen 191 IRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIK--------------SKDEYKLAMQIWS 255 (372)
T ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHh--------------CcCCcchHHHHHH
Confidence 9998877766665555432 22222222222222222 444444444455441 1011112223344
Q ss_pred HHHHHhch------hhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1832 AIIEVLGR------DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1832 ~l~~~Lg~------e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
.++..+|. ++.++.+...-.|.++.+..+|..|..+|+.++-
T Consensus 256 ~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 256 VVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44555553 3556666666678888999999999999999876
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=26 Score=50.80 Aligned_cols=173 Identities=16% Similarity=0.114 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhhh-CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHhccCchhHHHHHHHHHHHHcCC
Q 000049 1355 RRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC--EKLGRLFEPYVIQMLPLLLVAFSD 1431 (2629)
Q Consensus 1355 R~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La--~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2629)
...++.|......+. |..... .++..+.....+...|++|.+.+..+..+. ..++ .++....+|-..+...+.|
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~--e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D 1580 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQP--EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLND 1580 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHH--HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcc
Confidence 334455554444433 333332 566667665666668999998776665543 2344 3556667888888889999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc
Q 000049 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~ 1509 (2629)
.+..||+.|..++.-++..-.-..+..........+.. .+--..|+|+..||+++-..|-.+...+|+.+..+.....
T Consensus 1581 ~~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1581 DQIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred hHHHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC
Confidence 99999999998887776532111111111122222222 2334578999999999988888776666666666666666
Q ss_pred CCCHHHHHHHHHHHHHHhhhcC
Q 000049 1510 DTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
|+ ..++.++-+++..|-....
T Consensus 1661 e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1661 ES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred Cc-hHHHHHHHHHHHHHHHHhh
Confidence 65 6778888888887765443
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.78 Score=54.53 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=107.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH---hhHHHH
Q 000049 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK---LVLPSL 1463 (2629)
Q Consensus 1387 l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~---~ilp~L 1463 (2629)
+.++ ||...-.++..+..+++.-++.+.+.+..++..+.+.++++...|-.+|+.++..+++.++..... ..+-.|
T Consensus 97 L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 97 LSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred hchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 799999999999999987777788888899999999999999999999999999999988776543 222223
Q ss_pred HhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1464 l~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
+-.-..++-.++..+-.+|.+|.+....+ .+++.|..++.+.++.+|..++.+...+...++
T Consensus 176 l~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 176 LHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 33333456678889999999998864332 356667777899999999999988877766554
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.82 E-value=28 Score=44.98 Aligned_cols=214 Identities=18% Similarity=0.179 Sum_probs=128.8
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-hc--H---HhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LS--A---QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~-l~--~---~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2629)
|...+..++..++.+=+.+. +-+....-+..++.. ++ + ..+..++-.++.++++++..+|.-++++|..+..
T Consensus 43 f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 43 FSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred hHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 55555566677776655442 222333344444441 11 1 1356777788889999999999999999988887
Q ss_pred hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhcc-CCCChhHHH-HHHHHHhccc
Q 000049 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTTF 1565 (2629)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~~~~r~-al~~L~~~~~ 1565 (2629)
+..+.-......+...+.+-+-|..+-||..|..+|..+-+.-.|++. .+...|...+ +||+..+|. ++-.+..
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v--- 196 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV--- 196 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee---
Confidence 765543344566777788888899999999999999998766555543 2333444444 589888884 4333211
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHH-HHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~-~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
+. .-.|.+.....|-+...|+... .++-.++..... ++.+. +. .+...+.|....||.++..++.
T Consensus 197 ----dn----sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l--si~kr---i~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 197 ----DN----STYPCILERARDVSGANRRMVYERCLPRIGDLKSL--SIDKR---IL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred ----CC----CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc--cccce---eh-hhhhcchhhhhhHHHHHHHHHH
Confidence 11 1235555555555554444432 233333221101 11111 22 5566777888889998888876
Q ss_pred HHH
Q 000049 1645 SLI 1647 (2629)
Q Consensus 1645 ~l~ 1647 (2629)
.--
T Consensus 263 ~~w 265 (885)
T COG5218 263 SAW 265 (885)
T ss_pred HHh
Confidence 643
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=8.8 Score=50.27 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=105.6
Q ss_pred HHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHH---HHHHhhcCCCHHHHHHHHHHHHHHHhh----hC
Q 000049 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSR---LLDQLMKSDKYGERRGAAFGLAGVVKG----FG 1370 (2629)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~---ll~~L~~~~~~~~R~~Aa~~L~~l~~~----lg 1370 (2629)
+.+..+|+.++.+||..++..+-.+.+..+++. ..+++. .+..|..++=..+|..|..++..+... ++
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 556778888999999988887776666554432 223332 233344444457999999998888764 24
Q ss_pred cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000049 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1371 ~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2629)
+..+. +++..+.+-+..+....+|-+...++..+....- --+.+..++|.+-..+.|....||-++.+.+..+-.
T Consensus 257 ~~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~- 331 (1005)
T KOG1949|consen 257 PTILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA- 331 (1005)
T ss_pred HHHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh-
Confidence 44443 4566665555444456889888888888775432 346677889988888999999999999877766522
Q ss_pred hcHHhHHhh--HHHHHhhhccCCh
Q 000049 1451 LSAQGVKLV--LPSLLKGLEDKAW 1472 (2629)
Q Consensus 1451 l~~~~v~~i--lp~Ll~~L~~~~w 1472 (2629)
.....+-.+ +..++..|+.++-
T Consensus 332 vra~~f~~I~~~d~~l~~L~~d~~ 355 (1005)
T KOG1949|consen 332 VRAAKFWKICPMDHILVRLETDSR 355 (1005)
T ss_pred hhhhhhhccccHHHHHHHHhcccc
Confidence 111122222 3345555555443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=93.61 E-value=8.8 Score=49.66 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=45.5
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccc--hhhh--HHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1886 LMNTLISSLA-SSSSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2629)
Q Consensus 1886 Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~--~l~~--llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2629)
++..|++.+. +.++.+-..|+.=+|++++..+.. ++.. .-..+.+.+.++|+++|..|..++..++.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4455555553 455666677888889999887533 3221 23345567788999999999999887653
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.47 E-value=8.2 Score=50.81 Aligned_cols=220 Identities=19% Similarity=0.210 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCc
Q 000049 1900 ERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2629)
Q Consensus 1900 ~~R~~A~~~L~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2629)
..|..|+++||.++...+......+.. .|..+|+++..-.|..++..+.+...........+..+.+.+.+...|.++.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 468999999999999987765555554 6888899999999999999888877655432222113455566666666332
Q ss_pred -----------HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcC---chhHHHHHHHHHHhhhccCcCcc-----
Q 000049 1979 -----------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPH----- 2039 (2629)
Q Consensus 1979 -----------~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~----- 2039 (2629)
..+|..+...+..+.. .|... ..-+|.|-...+.+. .....++....+++...+.....
T Consensus 182 ~~~Y~El~~~l~~lr~ec~~Ll~~f~~-~g~~~-~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~ 259 (441)
T PF12054_consen 182 PPYYDELVPSLKRLRTECQQLLATFRD-VGKVP-PSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQ 259 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC-hhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 2345444444444433 33311 111121111111000 00001111111111000000000
Q ss_pred ---cchhhhcCC-------------CchhHHHHHHHHHH--HhCCChhhhHhhhHHHHHHhcC-CCCHHHHHHHHHHHHH
Q 000049 2040 ---ILPKLVHLP-------------LSAFNAHALGALAE--VAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAET 2100 (2629)
Q Consensus 2040 ---Lip~L~~~~-------------~~~~~~~aL~~La~--~~g~~l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~al~~ 2100 (2629)
....|.+.. ......+..++++. +.-..+++.++.++..||+.++ .++..++..+..++..
T Consensus 260 k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~ 339 (441)
T PF12054_consen 260 KLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLAR 339 (441)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 011111000 00012223333332 2234577788999999999995 5668889999999988
Q ss_pred HHhhccc--cc-HHHHHHHHHhhc
Q 000049 2101 VTLVIDE--EG-VESLVSELLKGV 2121 (2629)
Q Consensus 2101 l~~~~~~--~~-~~~ll~~Ll~~l 2121 (2629)
++..+.. .+ -+.++..|+..+
T Consensus 340 Li~~~~~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 340 LIQLCVDRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred HHHHHhCCCCCCcHHHHHHHhhhh
Confidence 8875431 22 355555555543
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.39 E-value=40 Score=45.45 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=58.6
Q ss_pred HHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhh---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI---MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2629)
Q Consensus 1846 l~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~---l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~ 1918 (2629)
+..+...+...+..||..+++.+.++..+.|..++.. .|.-+..++..+.|..+.+|..+.-.|.++++..+.
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 3333344566678899999999999999988777654 466777888889999999999999999999987654
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.2 Score=48.16 Aligned_cols=139 Identities=23% Similarity=0.132 Sum_probs=101.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP 2309 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p 2309 (2629)
+..-+.+.+.+.+++.|-.++..++.+++..+.+.+..+.......++.+++...+..++..++.++..++......
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~--- 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK--- 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC---
Confidence 34445555667788999999999999999987788877778888888999988778889999999999988765431
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHH
Q 000049 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2629)
Q Consensus 2310 ~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2629)
.+-.|..+ .|++..+++.++..++. ......++++|..++...+..+ .++.
T Consensus 103 ----------------p~l~Rei~----------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~-rp~~ 153 (165)
T PF08167_consen 103 ----------------PTLTREIA----------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF-RPFA 153 (165)
T ss_pred ----------------CchHHHHh----------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc-cchH
Confidence 11233322 25566677777777654 4567788889999988776666 6777
Q ss_pred HHHHHHHHHhh
Q 000049 2390 IRVYSVLKDLV 2400 (2629)
Q Consensus 2390 ~~i~~~L~~~l 2400 (2629)
.++-..+...+
T Consensus 154 ~ki~~~l~~ll 164 (165)
T PF08167_consen 154 NKIESALLSLL 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 77766665543
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=93.29 E-value=5.7 Score=55.08 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=90.7
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhhc-
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD----QVVAVREAAECAARAMMSQLS- 1452 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D----~~~~VR~aa~~al~~i~~~l~- 1452 (2629)
.-+.++.+.+.+++ -...+ +..++..+......--. +++..++..+.+ +++.+|..|+.++..+....-
T Consensus 357 ~a~~~i~~~i~~~~-~~~~e-a~~~~~~~~~~~~~Pt~----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 357 PALKFIKQWIKNKK-ITPLE-AAQLLAVLPHTARYPTE----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHHcCC-CCHHH-HHHHHHHHHHhhhcCCH----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 34556667776543 22222 33334444433322122 344444444443 467899999888887766321
Q ss_pred ------HHhHHhhHHHHHhhhcc----CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc---CCCHHHHHHH
Q 000049 1453 ------AQGVKLVLPSLLKGLED----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAG 1519 (2629)
Q Consensus 1453 ------~~~v~~ilp~Ll~~L~~----~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~---D~~~~VR~aA 1519 (2629)
...+..++|.+.+.|.+ .+-..+...+.+||++.. +..++.+...+. +..+.+|.+|
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~A 500 (574)
T smart00638 431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAA 500 (574)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHH
Confidence 11235667776665543 344456677888887753 334444444443 3467899999
Q ss_pred HHHHHHHhhhcCchhHHhHHHHHHhccCCCC--hhHH-HHHHHHHh
Q 000049 1520 QTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQ 1562 (2629)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~--~~~r-~al~~L~~ 1562 (2629)
++||..++..... .+.+.++....++. ..+| .|+..+..
T Consensus 501 v~Alr~~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 501 ILALRNLAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 9999998865442 23333444444433 3466 56655543
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.7 Score=50.70 Aligned_cols=109 Identities=16% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcChhhhhhchhhhhHHHHHHh-----cCCCCH-----hHHHHHHHHHHHHHHhcCCCccCchHHHHHHH
Q 000049 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRII-----GDRFPW-----QVKSAILSTLSIIIRKGGIALKPFLPQLQTTF 2318 (2629)
Q Consensus 2249 aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l-----~~~~~~-----~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~ 2318 (2629)
.......+.+... --+.||+.++.+.++-++ +.. +. .+|..|...++.++.+.+...+..-|.+.+++
T Consensus 256 v~~m~~sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~-p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTl 333 (450)
T COG5095 256 VVMMYSSLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNV-PDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTL 333 (450)
T ss_pred HHHHHHHHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHH
Confidence 3444445554433 345788777766655433 332 22 38889999999999999999998899999999
Q ss_pred HHHcCCC--CHHHHHHHHHHHHHHHh------ccCChhHHHHHHHHhhh
Q 000049 2319 IKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQ 2359 (2629)
Q Consensus 2319 ~k~L~d~--~~~vR~~Aa~aLg~l~~------~~~~~~~ll~~Ll~~l~ 2359 (2629)
+|.+-|. .....-.|.+++..+.. +.|+.+-+...+-+.+.
T Consensus 334 lKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 334 LKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred HHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 9998885 45667778888877722 35777766655554443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.8 Score=58.84 Aligned_cols=211 Identities=21% Similarity=0.185 Sum_probs=124.0
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHH-----HHHhhcCC--CHHHHHHHHHHHHHHHhhhC-
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRL-----LDQLMKSD--KYGERRGAAFGLAGVVKGFG- 1370 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~l-----l~~L~~~~--~~~~R~~Aa~~L~~l~~~lg- 1370 (2629)
-.|++.+++.|..+..+.+...+---..++..-+.-+.+++..- +..|..+. +.+.|-.|+..|+.++.++.
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 36899999999999877765433221111111111122232221 11111111 24678999999999998753
Q ss_pred -cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 1371 -ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448 (2629)
Q Consensus 1371 -~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~-~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~ 1448 (2629)
.+.--..+++......+++...|.-|+-.+.++|.|.+.... .+...-......++..+.|+.++||.+|..|++.+.
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 333223467777777777643689999999999999876552 111111245667788899999999999999999998
Q ss_pred HhhcHHh--HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1449 SQLSAQG--VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1449 ~~l~~~~--v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
...++.. -...+...+. |++.. .++ ........-.++..++|..+-||.....+|..+
T Consensus 671 ~~~~d~fde~~~~~~~~~~-l~~~~-----~~~--------------E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 671 SNGSDNFDEQTLVVEEEID-LDDER-----TSI--------------EDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred cccccccchhhhhhhhhhc-chhhh-----hhH--------------HHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 7653320 0111111111 10000 000 000111112466788999999999999999888
Q ss_pred hhh
Q 000049 1527 GSV 1529 (2629)
Q Consensus 1527 ~~~ 1529 (2629)
+..
T Consensus 731 ~~g 733 (1387)
T KOG1517|consen 731 VVG 733 (1387)
T ss_pred HHh
Confidence 753
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.84 Score=51.00 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=83.9
Q ss_pred HhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh---Chh
Q 000049 1617 IGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV 1692 (2629)
Q Consensus 1617 l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~---g~~ 1692 (2629)
+|.+++.+...+. +.++.+|..+.+++|.++. +.+-.+.... ......... .-............+. ..+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~~~----~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKSIQ----KSLDSKSSE-NSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhccc----ccCCccccc-cccccchhhHHhhccCCCchHH
Confidence 4788888888887 4579999999999999865 2211111000 000000000 0000000111111112 122
Q ss_pred HH-HhHhHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000049 1693 YF-EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2629)
Q Consensus 1693 ~l-~~llp~l~~~l~~~-~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv 1765 (2629)
++ .-.+..+++.++++ -..-+...++++..+....|....||+++++|.++..+....+..|+..+.-+..++
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 32 33455666666664 233455677888888888888889999999999999998777777777666665554
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=92.57 E-value=14 Score=45.74 Aligned_cols=218 Identities=20% Similarity=0.181 Sum_probs=139.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHh-hhC-cchh-hhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-C
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFG-ISSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-L 1413 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~-~lg-~~~l-~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~-~ 1413 (2629)
-++..+.......+|..-..+..-|..+.+ ..+ ...+ .+..+...|.+++...-..-+-.-|+..+..+.+..|. .
T Consensus 11 ~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~ 90 (307)
T PF04118_consen 11 EVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDG 90 (307)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 344555555555677776666666666665 211 1111 12356778888887765555666799999999998883 3
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2629)
+...+.-..|.++..+......||-.-...+...+-.+++. ..+.++..++.+++++.-.....+..++..+.....
T Consensus 91 L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 91 LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 55555566788888888888899988888887776666663 235556666677887776666677777777765433
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---------------chhHHhHHHHHHhccCCCChhH-H
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT-K 1554 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---------------~~~i~~lvp~Ll~~l~d~~~~~-r 1554 (2629)
.. .++..++.++- ++|.+|..|..-+..-..... .++..-++..+...+.|.+--+ |
T Consensus 171 ~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 171 DK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred hh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 22 23444554444 378889888766554332222 1233446777888888887655 4
Q ss_pred HHHHHHHh
Q 000049 1555 YSLDILLQ 1562 (2629)
Q Consensus 1555 ~al~~L~~ 1562 (2629)
.+++.+..
T Consensus 244 ~~LDlLl~ 251 (307)
T PF04118_consen 244 GFLDLLLS 251 (307)
T ss_pred HHHHHHHH
Confidence 67887764
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=92.32 E-value=57 Score=44.42 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=125.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcH-----HHHHHHHhcCC------CCHHHHHHHHHHHHH
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI-----AATLREGLADR------NSAKRREGALLAFEC 1405 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i-----~~~L~~~l~~~------~~~~~R~~Al~al~~ 1405 (2629)
..++.++..|...+ ...|..+...+..++++-.........+ .+|+...+... .....+..|+..+.+
T Consensus 5 ~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34455555554444 3556666665666665322111100001 23455555431 123455566666666
Q ss_pred HHHHhccCchhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHH
Q 000049 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2629)
Q Consensus 1406 La~~~~~~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ 1484 (2629)
++.-..-.-.|-+..-+|.++..+..... .+-+-|.+++..++. ++.+-
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~---------------------------- 133 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGA---------------------------- 133 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhH----------------------------
Confidence 66511111235566778888887765544 444444444444431 11111
Q ss_pred HHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000049 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2629)
Q Consensus 1485 la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2629)
+.+.. .+.++.+.+.+.+ ++...+.|...|..+....+...+..
T Consensus 134 ------~aLl~--~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~--------------------------- 177 (543)
T PF05536_consen 134 ------KALLE--SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE--------------------------- 177 (543)
T ss_pred ------HHHHh--cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh---------------------------
Confidence 11111 3455666666655 67778888888887766543110000
Q ss_pred ccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC-C---CcccchHhhhHHHHHHHhcC-CCHHHHHHH
Q 000049 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYIGLLLPEVKKVLVD-PIPEVRSVA 1639 (2629)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~-~---~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A 1639 (2629)
....+..+++.+.+.+.......+-..+..++.+....+. + ..-....+.+..++...+.+ ..+.-|..+
T Consensus 178 -----~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 178 -----DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred -----hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 0001112222333333322334455566666666654310 0 11223567788888888875 467889999
Q ss_pred HHHHHHHHhhhCCC
Q 000049 1640 ARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1640 ~~aL~~l~~~~g~~ 1653 (2629)
....+.+....|.+
T Consensus 253 l~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 253 LNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHhChH
Confidence 99999999988865
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.29 E-value=53 Score=44.03 Aligned_cols=293 Identities=12% Similarity=0.090 Sum_probs=168.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccc-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh--chhhhhhhH
Q 000049 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN--SKLYLVDEA 2151 (2629)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~-~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~--~~~~~~~~~ 2151 (2629)
|++.++..++++..-++..+++.+..+-....+.+ .-.+.+...+.+++.+..++..|+.++..+..+ ....++.|+
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahV 540 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHV 540 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence 44555666777888889999998888844443333 556677777778888889999999999988654 345688999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhH
Q 000049 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLL 2231 (2629)
Q Consensus 2152 ~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~il 2231 (2629)
|.+++.|+.+-++-+.++.....+.+-.-+...-..+-+.+...+.+..-
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFl------------------------------ 590 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFL------------------------------ 590 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHH------------------------------
Confidence 99999999999888777766555544333222222233334443333221
Q ss_pred HHHHHHHhcC------CHHHHHHHH---HHHHHHHhhcC-hhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000049 2232 PIFLQGLISG------SAELREQAA---LGLGELIEVTS-EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2629)
Q Consensus 2232 p~ll~~L~~~------~~~~r~~aa---~~L~~l~~~~~-~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2629)
.+....++++ ..+...+|. .++..++-... ...+-.++.....|.+..+-+..-.+.-..+++.+....-
T Consensus 591 kiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf 670 (970)
T COG5656 591 KIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF 670 (970)
T ss_pred HHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence 1111112211 112222332 22333332221 0112334445555555544333334455555555543222
Q ss_pred hcCCCccCchHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccC-------ChhHHHHHHHHh-hhcCCH--HHHHHHH
Q 000049 2302 KGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALST-------RVDPLVGDLLSS-LQVSDA--GIREAIL 2370 (2629)
Q Consensus 2302 ~~~~~l~p~lp~L~~~~~k~L~d~~-~~vR~~Aa~aLg~l~~~~~-------~~~~ll~~Ll~~-l~~~d~--~vr~~~l 2370 (2629)
.. ..+.|..+.+.+.+.+++.++. ...-..++-++.+++.++. -.-..+-++... +.+.+. .=+..++
T Consensus 671 ~s-keI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc 749 (970)
T COG5656 671 MS-KEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVC 749 (970)
T ss_pred HH-HHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHH
Confidence 11 2344677788888889988874 3566677788888877652 122233333333 223222 3345566
Q ss_pred HHHHHHHhhcCCCcChHHHHHHHHHHHH
Q 000049 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKD 2398 (2629)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~ 2398 (2629)
+-+.+++-..++.+..+|++...+....
T Consensus 750 ~i~e~l~Ln~rd~Ll~qy~plfi~vags 777 (970)
T COG5656 750 RIIESLILNIRDELLSQYLPLFISVAGS 777 (970)
T ss_pred HHHHHHHHHccchhHHhhhHHHHHHHhh
Confidence 6677777777777777788876666653
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=92.29 E-value=46 Score=43.31 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHhhh-cCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHH---HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000049 2472 SILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD---ILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2629)
Q Consensus 2472 ~i~~~l~~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~---~l~~l~~~l~~~~~~vr~~al~~l~~~a~ 2545 (2629)
+++..|.+.+ +++++.+-.-|..-+|.++.+.... ..+.+ .=..+++.+++++++||..|+.++..+--
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-----r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-----KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-----HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4556666666 3445554444555688887775211 12222 23467788889999999999999987743
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.4 Score=49.21 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhccCCh----------------------------------hHH-----
Q 000049 2311 LPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRV----------------------------------DPL----- 2350 (2629)
Q Consensus 2311 lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~~~~----------------------------------~~l----- 2350 (2629)
.|+|.+.+++.+..+ +..+|..+.++||.+..++|.. +.+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 389999999998886 8999999999999995543211 111
Q ss_pred HHHHHHhhhcCC-HHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000049 2351 VGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2629)
Q Consensus 2351 l~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2629)
+..|+..++++. ..-...+++|+-.++...|... .+|.+.+++.+...+...++..|+..-.-|+.|..
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 123444444433 3444566777777776666665 67777777777777776666666665555555543
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=91.93 E-value=49 Score=42.88 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=53.8
Q ss_pred ccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhh--hhhchhhhhHHHHHHhcCCCCH----hHHHHHHHHHHH
Q 000049 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS--LKEFVIPITGPLIRIIGDRFPW----QVKSAILSTLSI 2298 (2629)
Q Consensus 2225 k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~--l~p~v~~i~~~Li~~l~~~~~~----~vk~~al~~L~~ 2298 (2629)
..++..+.+...++.++++.+|.+|..++..++.....+. .+..+.-+..|+...+..+... +++..++..++.
T Consensus 270 ~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 270 EHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 3566777788888999999999999999999998654322 2344455667777666654444 667777777765
Q ss_pred HH
Q 000049 2299 II 2300 (2629)
Q Consensus 2299 L~ 2300 (2629)
++
T Consensus 350 ll 351 (372)
T PF12231_consen 350 LL 351 (372)
T ss_pred hH
Confidence 55
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.76 E-value=6.6 Score=52.40 Aligned_cols=169 Identities=17% Similarity=0.147 Sum_probs=118.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
.+++.+...+...+....+.--.+-+..+.+....+.+.. .|++.|....++. +...++.++..+..+++.++ .+
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~-~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~ 423 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKE-KILPLLYRSLEDS-DVQIQELALQILPTVAESID---VP 423 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHH-HHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HH
Confidence 4555555555444433455555555666777777766653 7999999999887 78899999999999999887 24
Q ss_pred HHH-HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1417 YVI-QMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1417 ~v~-~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
.+. .++|.+.. ++...+..|+..+..|+..+++.+....+-..++.+.+.....+.....+.+.+...++...+....
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 444 47777655 4467788999999999999998888887767777777888778888888888877776665544211
Q ss_pred hhccchHHHHhhhhcC
Q 000049 1495 QCLPKIVPKLTEVLTD 1510 (2629)
Q Consensus 1495 ~~L~~ivp~L~~~L~D 1510 (2629)
-....++|.+..+...
T Consensus 504 v~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 504 VMAENVLPLLIPLSVA 519 (700)
T ss_pred eehhhhhhhhhhhhhc
Confidence 1224455555555443
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=91.55 E-value=5.2 Score=51.51 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhh
Q 000049 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSR 1930 (2629)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~----------~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~ 1930 (2629)
.+++..++..|.--.+.+|+..++|.++.++- +.+|..|-.|+..+..++..++.. ..+.++.++.+
T Consensus 267 lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 267 LMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred HHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34455566666555667888888888887764 356889999999999999988765 45778888888
Q ss_pred hcCCC--ChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhc
Q 000049 1931 GLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2629)
Q Consensus 1931 ~L~d~--~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2629)
.+.|+ ......|+..+|.++....-...+.+.+......+...+.
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 87764 5678889998888764322222223344444444444443
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=91.23 E-value=37 Score=40.80 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=123.6
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHH
Q 000049 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2629)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~L 2354 (2629)
.|+..++...+++.....+.+|..++..-. ...|.+.+++......++...+..+...+..+...+++.-+++..+
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~ 79 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPL 79 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 344445555678888899999998877531 4456777777766666677777788888888877777776777766
Q ss_pred HHhh--h------c--CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhcCC
Q 000049 2355 LSSL--Q------V--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2355 l~~l--~------~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+..+ + + ...+...+...+++.++...+. .-..++..+...+ .+.++.++..+.+.+..++...-
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 6551 1 1 1255566666788888876544 3345555566666 67788888888888888883211
Q ss_pred hhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccC----ChhHHHHHHHHHhhhcCCChhHHH
Q 000049 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLRE 2490 (2629)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~----~~~~~~i~~~l~~~~~~~~~~ir~ 2490 (2629)
- ++.+.++-+...+..+. +-.....++.++.--|...++ ..+...++..+.+...+.+.....
T Consensus 155 v-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~ 221 (234)
T PF12530_consen 155 V-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVAS 221 (234)
T ss_pred c-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHH
Confidence 1 23334443333332222 222333344444333333222 234567788888877777654333
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=91.01 E-value=5.7 Score=55.76 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=77.2
Q ss_pred chhhHhHHHHHHHHHhhC-Cc-----------cccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCC
Q 000049 2443 WAARHGSVLVFATFLRHN-PS-----------AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPAN 2510 (2629)
Q Consensus 2443 ~~~~~~~~~~l~~~l~~~-p~-----------~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~ 2510 (2629)
...+..+.+++..++... .. ......+.+.+...+.......+..-+..++.|+|.+=.
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------- 519 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC---------
Confidence 345666777777776421 11 111223444555555555556667778889999997521
Q ss_pred chhhHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhcc
Q 000049 2511 TTVVVDILASVVSALH---DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587 (2629)
Q Consensus 2511 ~~~l~~~l~~l~~~l~---~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~ 2587 (2629)
...++.+...+. +.+..+|.+|+.+++.++..+|+.+++.+ +|. |....++. .||.|| +..|++-
T Consensus 520 ----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l---~~I-~~n~~e~~-EvRiaA---~~~lm~~ 587 (618)
T PF01347_consen 520 ----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL---LPI-FMNTTEDP-EVRIAA---YLILMRC 587 (618)
T ss_dssp ----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH---HHH-HH-TTS-H-HHHHHH---HHHHHHT
T ss_pred ----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH---HHH-hcCCCCCh-hHHHHH---HHHHHhc
Confidence 133444444443 44899999999999999998988776533 343 44443333 488766 5566666
Q ss_pred ccCchhHHHHHHHh
Q 000049 2588 TRGSEYIQGAQKFI 2601 (2629)
Q Consensus 2588 ~~~~~~~~~~~~~l 2601 (2629)
......++.+..++
T Consensus 588 ~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 588 NPSPSVLQRIAQSL 601 (618)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44455555555444
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.93 E-value=73 Score=42.91 Aligned_cols=342 Identities=16% Similarity=0.187 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhc
Q 000049 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALK 1667 (2629)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~-~g~~~~~~ll~~Ll~~L~ 1667 (2629)
++++-..+.++++.+.+-.+- .-+. -+..++.+...+. ..++|.+|+.|+-.++.. +.+-.--.++..|.+.++
T Consensus 206 npgl~~~cLdc~g~fVSWIdI-nLIa--Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDI-NLIA--NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhh-hhhh--chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 677777788888877665421 1111 2335566666665 478999999999887763 222111123333322221
Q ss_pred -----cCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhh-cCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHH
Q 000049 1668 -----SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2629)
Q Consensus 1668 -----~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l-~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ 1741 (2629)
+.+ ..+-......++.++.+.|.+.. .+.+.+ +..+...++.+.. -+..++|.
T Consensus 281 lfg~~s~d-q~~d~df~e~vskLitg~gvel~-----~i~s~lnseld~~~kqn~l~---------------~ll~~vpy 339 (980)
T KOG2021|consen 281 LFGYHSAD-QMDDLDFWESVSKLITGFGVELT-----IIISQLNSELDTLYKQNVLS---------------ILLEIVPY 339 (980)
T ss_pred HHhhhccc-cccCchHHHHHHHHHhhcceeee-----hhHhhhhhccCHHHHHHHHH---------------HHHHHHHH
Confidence 111 00111233446667777776521 111111 2234444443322 23347788
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcccc--ccC-C
Q 000049 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL--LEG-G 1818 (2629)
Q Consensus 1742 ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~--~~~-~ 1818 (2629)
+++.+.++++++-......+...+..+... + .+.++. +.-.. ..+-....++.- .++- .++ .
T Consensus 340 llq~l~~e~ddit~~ifpFlsdyl~~LKkl------~----~ls~~q-k~~l~--~illai~kqicy--demy~nddn~t 404 (980)
T KOG2021|consen 340 LLQFLNNEFDDITAKIFPFLSDYLAFLKKL------K----ALSSPQ-KVPLH--KILLAIFKQICY--DEMYFNDDNVT 404 (980)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhhc------c----cccchh-hccHH--HHHHHHHHHHhc--cHHhhcccCCC
Confidence 888988887776554444333322211100 0 000100 00000 001111111100 0000 000 0
Q ss_pred CCCCcccHHHHHH---HHHHHhc---hhh----HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhH--------h
Q 000049 1819 SDDEGASTEAHGR---AIIEVLG---RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--------K 1880 (2629)
Q Consensus 1819 ~ede~~~~~~~~~---~l~~~Lg---~e~----~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l--------~ 1880 (2629)
++|+++.-++.++ .+.+.++ ++. ..+.++.-.+...+.++..-+.|+..+-.+.+..+... .
T Consensus 405 g~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s 484 (980)
T KOG2021|consen 405 GDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDIS 484 (980)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCcccc
Confidence 1111111222222 2222222 121 11222332334567788888999998888877544211 1
Q ss_pred --hhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHh---c--cchhhhHHHHHh--hhcCCCChhHHHHHHHHHHH
Q 000049 1881 --EIMPVLMNTLISS--LASSSSERRQVAGRALGELVRKL---G--ERVLPSIIPILS--RGLKDPSASRRQGVCIGLSE 1949 (2629)
Q Consensus 1881 --~~l~~Ll~~L~~~--L~~~~~~~R~~A~~~L~~lv~~~---~--~~~l~~llp~L~--~~L~d~~~~vR~~a~~aL~~ 1949 (2629)
..+..+++.++.. ..++++ ..+...+..+++.. . +...|.++..+. +++...+..||..+.+....
T Consensus 485 ~~~vl~~~~~ll~tsqv~~h~h~---lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~R 561 (980)
T KOG2021|consen 485 TSQVLFLNELLLMTSQVLAHDHE---LVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTR 561 (980)
T ss_pred HHHHHHHHHHHHHHcccccCCch---HHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHH
Confidence 1112223333221 223444 44444454455432 1 123455555444 36777889999999998888
Q ss_pred HHHhhchhhHHHhHHHHHHHHHHHhc
Q 000049 1950 VMASAGKSQLLSFMDELIPTIRTALC 1975 (2629)
Q Consensus 1950 li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2629)
.++... ..+.+|.+.++..+...|.
T Consensus 562 fVKlLk-kqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 562 FVKLLK-KQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 877653 4567788888888877773
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=90.92 E-value=22 Score=44.12 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=132.4
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH----HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchH
Q 000049 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
.+...|.++|...-+.++-..+......+...+|.+.+ .-..|.++..+....-.||...+..+...-..+|..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 34456667776665667777888888889999998865 23456666667777788999999999988878899999
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcc
Q 000049 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2629)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k 1812 (2629)
|.+..++..++.++.|+..++-+.+...+..+...++.+ .+...+...+- .+...|..++..+..-+.... .
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~---~- 205 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQ---N- 205 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHh-cCcchhHHHHHHHHHhCCccc---c-
Confidence 999999999999999988888888888888887776655 23333333222 234567777766554332111 0
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1813 ~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
++..... ......++. .-.-++.+++.++.|.+.-|++.+++.+-.-..
T Consensus 206 -------~~~~~~~----~~~~~~~~~-~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 206 -------DELSLSS----EEQEYCLGP-DPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred -------cccccch----HHHHHhcCC-CccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 0000000 011122332 122366777888899999999999988755443
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=90.81 E-value=6.4 Score=51.50 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=69.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCc
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIAL 2307 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l 2307 (2629)
++..++..+-.++..-...-..-+..++...++..+.+....+..-+.+.+... +..|-..|+..+. .++.-+...-
T Consensus 256 ~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li~~~~ 334 (409)
T PF01603_consen 256 VIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLISQNS 334 (409)
T ss_dssp HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHHHCTH
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHHHhCh
Confidence 333344444444444444557788999998888888888888887788887764 7778777777664 2233222221
Q ss_pred cCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhccC
Q 000049 2308 KPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALST 2345 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~~ 2345 (2629)
...+|-+.+.+.+..... |.+||..|..++..+..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 223344444444433333 89999999999999877654
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=5.6 Score=53.04 Aligned_cols=169 Identities=11% Similarity=0.123 Sum_probs=110.7
Q ss_pred hhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1575 ALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
..+.|.|...++- .+.++...-.+-+..+.+... ++ .+.+.++|.|...+++.+..++..+...++.+++.+.-.
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~-~e---~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTP-PE---EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC-hH---HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 3455666655542 223344334444444454432 22 356789999999999999999999999999999987644
Q ss_pred C-chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchH
Q 000049 1654 N-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1654 ~-~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
. -..++|.+...........++..+..+++.+++.+..-..-+.++.+.+..+..++.+..+...++..++......-.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 3 346777776554444555678888899999987766554444455667777778888888888888877755433211
Q ss_pred hhHHhHHHHHHhhcC
Q 000049 1733 NYLQQVLPAILDGLA 1747 (2629)
Q Consensus 1733 p~l~~ii~~ll~~L~ 1747 (2629)
-..+.++|.+.....
T Consensus 504 v~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 504 VMAENVLPLLIPLSV 518 (700)
T ss_pred eehhhhhhhhhhhhh
Confidence 123456666665543
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=73 Score=42.47 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=75.2
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchh-
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL- 1921 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l- 1921 (2629)
++...+...+.|++..|...+..++..++-.++.--..++ ...+..+.+.+.++++..|..+.++|..+.-...+...
T Consensus 419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~ 498 (678)
T KOG1293|consen 419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKF 498 (678)
T ss_pred hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHH
Confidence 4445555556888889999999999888865442111222 24567788888999999999999999988755444321
Q ss_pred ---h-hHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000049 1922 ---P-SIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1922 ---~-~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2629)
. .....+....+|+++.|..++...+..+...
T Consensus 499 ~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 499 QLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 1 1122344567789999998888877776543
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.32 E-value=12 Score=47.87 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH----hhchh
Q 000049 1883 MPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKS 1957 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~----~~~~~ 1957 (2629)
-+.+...+...+. +.++........+++.....++..+-+.++..+..++.++.+.+|..-+..+++++. .....
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 3444445555454 578888899999999888888666778899999999999998899999999998876 22223
Q ss_pred hHHHhHHHHHHHHHHHhcCCcHH
Q 000049 1958 QLLSFMDELIPTIRTALCDSILE 1980 (2629)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~d~d~~ 1980 (2629)
...++++.++..+.+....+.+.
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc
Confidence 33445555555555555555443
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=90.29 E-value=4.3 Score=51.65 Aligned_cols=75 Identities=31% Similarity=0.398 Sum_probs=55.5
Q ss_pred cccchHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhccCCC-hHHHHH
Q 000049 1612 DMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNS-NVERSG 1677 (2629)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~----------d~~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll~~L~~~~~-~~~R~~ 1677 (2629)
.+.+|+..++|.+..++. +..|.+|..|+..++.+++.++..+ .+.++..+.+.+.+... .....|
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 478999999999998873 4578999999999999999998763 24455555555655443 334668
Q ss_pred HHHHHHHHH
Q 000049 1678 AAQGLSEVL 1686 (2629)
Q Consensus 1678 a~~~L~~i~ 1686 (2629)
+..+++.+.
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 887777653
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.27 E-value=10 Score=46.80 Aligned_cols=180 Identities=19% Similarity=0.173 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---Cc-hhhHHHHH
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLL 1663 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~---~~-~~ll~~Ll 1663 (2629)
.+.+.|..|.+-+..+++-+....++.++ . .+..+...+++.+..+|+.|+..||+.+...+.. .+ ...++.|+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~-g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISL-G-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhc-c-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 45677888888888877766554444433 2 3333444889999999999999999999865432 11 23677888
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHhhChh--HHHhH--hHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHHh
Q 000049 1664 DALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHI--LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2629)
Q Consensus 1664 ~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~l~~l--lp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ 1737 (2629)
..+.++.+..+|..+..+++.+++..... .+-.+ ...+...+++ .+...+.-++.++..+...-...-.-.-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 88888777778899999999888765332 22110 2234444555 456667777777777775433211101111
Q ss_pred HHHHH-HhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000049 1738 VLPAI-LDGLADENESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1738 ii~~l-l~~L~d~~~~VR~~al~al~~iv~~~~ 1769 (2629)
.++.. .....-.+.+++..++.+.-..+..+.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 12211 122223345677777777666555443
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.31 E-value=34 Score=46.51 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=68.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc--ccHHHH--HHHHHhhcCCCChhHHHHHHHHHHHHHHh-ch--hh
Q 000049 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESL--VSELLKGVGDNQASIRRSSAYLIGYFYKN-SK--LY 2146 (2629)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~~~~l--l~~Ll~~l~d~~~~vR~~a~~~L~~l~~~-~~--~~ 2146 (2629)
.-+|..+.++...++.++..+...+..++..-.+ ..+..+ ++.|+..+.+.+..++..||.++.++.-. .. ..
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3456666677777777877777777666532111 112333 67788888999999999999999998533 22 11
Q ss_pred hh-hhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000049 2147 LV-DEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2147 ~~-~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
+. .+. .=++.++.++. -.|.+|++.....|..+...
T Consensus 313 lai~~~-~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 313 LAIKEL-NGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhhc-CChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 11 111 12344555554 36778998888888887544
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=89.27 E-value=3.4 Score=46.00 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhhccCChhh
Q 000049 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~------------------D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
+.|++..++|.++.-.. |.--.+|++|.+++..+.+..... .+..++..+..+|.+ +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 44677888888886432 234589999999999998854433 457789999999988 8899
Q ss_pred hHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc----CC--------CHHHHHHHHHHHHHHhhhc
Q 000049 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT----DT--------HPKVQSAGQTALQQVGSVI 1530 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~----D~--------~~~VR~aA~~aL~~l~~~~ 1530 (2629)
|.-+...+..++..+|..+...+..+++.+...++ +. ..+...++++++..+...+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999888774 21 2334455666666664444
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.07 E-value=76 Score=45.86 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--HHHHHHHHhhhcCCcchhhhhHHHHHHHHhccc
Q 000049 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2629)
Q Consensus 2515 ~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~ 2588 (2629)
..+|..|++.|++.+..+=-.++-+|..+.-++|.. .++| ...+|.+.+.+.-++--+-..+-.|+.-++..+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 457888899999999888888888888888877754 2233 346888888888887767777777777777776
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.6e+02 Score=43.48 Aligned_cols=94 Identities=20% Similarity=0.139 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHH-hccchhhhHHHHHhhhc-CCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCc
Q 000049 1901 RRQVAGRALGELVRK-LGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2629)
Q Consensus 1901 ~R~~A~~~L~~lv~~-~~~~~l~~llp~L~~~L-~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2629)
....+..|.+..... .|....+.++..+.... .+..+.+|..+..-+...+=...-...+...++|--.+...+.|.+
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 344455555444433 34446778887777533 3457889988776665543221111234455677778888999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000049 1979 LEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1979 ~~VR~~A~~al~~l~~ 1994 (2629)
-+||+.|+.++..+.+
T Consensus 1583 i~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987765
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=88.52 E-value=24 Score=49.04 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred CchhhHhHHHHHHHHHhhCCccccC--ChhHHHHHHHHHh----hhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhH
Q 000049 2442 SWAARHGSVLVFATFLRHNPSAISM--SPLFLSILDRLKS----SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2629)
Q Consensus 2442 ~~~~~~~~~~~l~~~l~~~p~~~~~--~~~~~~i~~~l~~----~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2629)
....+.++.+++..++...-..--. ....+.+++.+.+ .....+...+...+.|+|.+-. | ...
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------~----~~i 479 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------P----SSI 479 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC------h----hHH
Confidence 3345666778887776522111000 1122344444444 3344455566778888886422 1 223
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccCchhHH
Q 000049 2516 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQ 2595 (2629)
Q Consensus 2516 ~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~ 2595 (2629)
..+.+++.+-...+..+|.+|+.+++.++..+|..+++.+ +|. |....+ ...||.| |+..+++-......++
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l---~~i-~~n~~e-~~EvRia---A~~~lm~t~P~~~~l~ 551 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL---LPI-YLNRAE-PPEVRMA---AVLVLMETKPSVALLQ 551 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH---HHH-HcCCCC-ChHHHHH---HHHHHHhcCCCHHHHH
Confidence 3444444444566789999999999999999999887643 333 433332 3347855 4566666644455555
Q ss_pred HHHHHh
Q 000049 2596 GAQKFI 2601 (2629)
Q Consensus 2596 ~~~~~l 2601 (2629)
.+...+
T Consensus 552 ~ia~~l 557 (574)
T smart00638 552 RIAELL 557 (574)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=88.45 E-value=7.7 Score=48.12 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=108.8
Q ss_pred HHHHHHh-hcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc----c--CchHHHHHHHHHHcC-
Q 000049 2252 GLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL----K--PFLPQLQTTFIKCLQ- 2323 (2629)
Q Consensus 2252 ~L~~l~~-~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l----~--p~lp~L~~~~~k~L~- 2323 (2629)
.+.-++. ..+...+..+..-++++++.++.|. +.++|...+.+|..++.+++... + ...+-+.+.+..++.
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~ 177 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYY 177 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhc
Confidence 4444444 6666778888899999999999885 89999999999999999877544 1 234556677777776
Q ss_pred -------CCCHHHHHHHHHHHHHHHhc------cC---ChhHHHHH-HHHhhh-cC---CHHHHHHHHHHHHHHHhhcCC
Q 000049 2324 -------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAGK 2382 (2629)
Q Consensus 2324 -------d~~~~vR~~Aa~aLg~l~~~------~~---~~~~ll~~-Ll~~l~-~~---d~~vr~~~l~AL~~vi~~~g~ 2382 (2629)
+.+..+=..|..|+-.+... .+ .++.++.+ ++..+. .. .+.++...++.+..++...|.
T Consensus 178 LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi 257 (282)
T PF10521_consen 178 LPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGI 257 (282)
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhcc
Confidence 44556666777787777443 12 24455544 555542 22 388999999999999999888
Q ss_pred CcChHHHHHHHHHHHHhhcCC
Q 000049 2383 SVSSAVKIRVYSVLKDLVYHD 2403 (2629)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~ 2403 (2629)
.. ..+.+.++..+.+.+.++
T Consensus 258 ~~-~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 258 SS-VKHLQRIIPVLSQILENP 277 (282)
T ss_pred HH-HHHHHHHHHHHHHHhcCC
Confidence 65 678888888888877665
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=88.32 E-value=3.6 Score=42.53 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhcc-chHhhHHhHHHHHHhh
Q 000049 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1669 ~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~-~f~p~l~~ii~~ll~~ 1745 (2629)
..+...|..+..+++++++ ++.+......|.++..++. ..+++|..++.++..+...++. ++.|++++++-.+++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4456677888888999888 7777777788888777665 3568999999999999988874 6777777777777665
Q ss_pred c
Q 000049 1746 L 1746 (2629)
Q Consensus 1746 L 1746 (2629)
+
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 4
|
; GO: 0004674 protein serine/threonine kinase activity |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=88.21 E-value=10 Score=44.51 Aligned_cols=149 Identities=17% Similarity=0.271 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
..-+++.....|.++.+...|.+|..+|.. .-|...+.++ ++.++.+.+ ++-+|-..-...++.+..+.....-+
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---dsGlhQLvPY-Fi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---DSGLHQLVPY-FIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 344566666666665566788888777642 2233333222 233333333 22222222223344444444333335
Q ss_pred chhHHHHHHHHHHHHc-----C-CCCH----HHHHHHHHHHHHHHHhhcHHh--H-HhhHHHHHhhh-cc-CChhhhHHH
Q 000049 1414 FEPYVIQMLPLLLVAF-----S-DQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGL-ED-KAWRTKQSS 1478 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l-----~-D~~~----~VR~aa~~al~~i~~~l~~~~--v-~~ilp~Ll~~L-~~-~~w~~r~~a 1478 (2629)
..||+.+++|.++.|+ + +++. .+|+-|...++.+++.++... . ..+.-.+++.+ +. +...+..||
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 6899999999998875 2 3332 499999999999988876542 1 23333444433 22 345677788
Q ss_pred HHHHHHHHh
Q 000049 1479 VQLLGAMAY 1487 (2629)
Q Consensus 1479 ~~~L~~la~ 1487 (2629)
+..+..+..
T Consensus 351 lkgls~l~k 359 (450)
T COG5095 351 LKGLSILSK 359 (450)
T ss_pred hhhhhhhch
Confidence 888877654
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=88.05 E-value=2.5 Score=42.25 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=66.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccch
Q 000049 2113 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192 (2629)
Q Consensus 2113 ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l 2192 (2629)
.+...+..+.|+.+.+|..++..|..+++... ......+.++..++..+.|+|+-|--+|..+|..++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 34556667788899999999999999987654 23345678899999999999999999999999999998887666655
Q ss_pred HHH
Q 000049 2193 IKV 2195 (2629)
Q Consensus 2193 ~~~ 2195 (2629)
+..
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 543
|
|
| >COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.04 E-value=1.1e+02 Score=40.89 Aligned_cols=223 Identities=17% Similarity=0.173 Sum_probs=118.5
Q ss_pred cchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchH----HHHHHHHHHh-----hcC-C----CHHHHHHHHHHH
Q 000049 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAP----TLVSRLLDQL-----MKS-D----KYGERRGAAFGL 1362 (2629)
Q Consensus 1297 ~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~----~ll~~ll~~L-----~~~-~----~~~~R~~Aa~~L 1362 (2629)
.++.+++.+.+.+++.+..++..+++.+.......+-... ++++-+.+.+ .+. + +.-+..++..-+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 3567788888888888899999999988877766554322 2222222221 110 0 122445555555
Q ss_pred HHHHhhhCcchhhhhcHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHhccCchhHHHH-HHHHHHH-HcCCCC
Q 000049 1363 AGVVKGFGISSLKKYGIAATLREGLADR-------NSAKRREGALLAFECLCEKLGRLFEPYVIQ-MLPLLLV-AFSDQV 1433 (2629)
Q Consensus 1363 ~~l~~~lg~~~l~~~~i~~~L~~~l~~~-------~~~~~R~~Al~al~~La~~~~~~~~~~v~~-ilp~ll~-~l~D~~ 1433 (2629)
+ +++..|.+.... -+.+.+.+.+.-+ +....|+++.+.+-.+..+..+.+.+-+.. +.-.+++ .+-||+
T Consensus 323 a-la~~~~id~~d~-~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe 400 (993)
T COG5234 323 A-LAGAGLIDYSDC-LILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE 400 (993)
T ss_pred H-Hhhccccchhhh-hhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence 5 444444443321 1444444433221 234678888887777776644444444333 3334444 688999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh--hHHHHH-HHHHHHhhCchhhhhhccchHHH-Hhhhhc
Q 000049 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT--KQSSVQ-LLGAMAYCAPQQLSQCLPKIVPK-LTEVLT 1509 (2629)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~--r~~a~~-~L~~la~~~p~~l~~~L~~ivp~-L~~~L~ 1509 (2629)
-.||.+|..++......-.+.....-+-.++ +|.. |...|. .+.......| .+..|- +++.. +++-|.
T Consensus 401 l~vRr~a~Aal~E~iGR~~s~a~g~~lIslI------N~~sv~r~s~csg~~~r~~~~~~-k~~~Ce-dVF~diLl~Nl~ 472 (993)
T COG5234 401 LNVRRAATAALFEVIGRHASIADGLSLISLI------NYVSVTRISNCSGDLCRKVAHFP-KFRSCE-DVFQDILLTNLQ 472 (993)
T ss_pred hhhhhHHHHHHHHHhccCCCcccchhhhhhc------cceecchhhhcchHHHHHhcCcc-ccchHH-HHHHHHHHhhhh
Confidence 9999999888877655422211111111122 3321 112121 1112221222 222222 33333 555566
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 000049 1510 DTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
+-+++|+.....+|.++.+.
T Consensus 473 H~~~~~k~~~~y~l~~liK~ 492 (993)
T COG5234 473 HWDVKVKQLSAYSLRQLIKY 492 (993)
T ss_pred ccchhhhhhccccHHHHhcC
Confidence 77888999888899888653
|
|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.3e+02 Score=41.80 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=68.9
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhh-hhccC-CchHHHHHH--------HHHHhh-cCCCCCC
Q 000049 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-IAVHD-PEKSVAEAA--------EDIWDR-YGYDFGT 1130 (2629)
Q Consensus 1062 ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~~~a--------~~~w~~-~~~~~~~ 1130 (2629)
.++..+|+|+..|+.||++|++... ...|...+. ++..+ .+-..|-.| .++|++ ++...+.
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~--------q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEK--------QHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhc--------cccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 5688899999999999999987642 122333332 12222 233333332 367986 3322222
Q ss_pred C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Q 000049 1131 D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSL 1175 (2629)
Q Consensus 1131 ~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~ 1175 (2629)
+ + ..++..+-+.++...-..|.|++-++. .+|+.|++++..|.+.
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~ 131 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSL 131 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhh
Confidence 2 3 677787777777777788889988876 6788888888777765
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=87.22 E-value=4.2 Score=40.62 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=64.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHH
Q 000049 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2629)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~ll 1777 (2629)
+...+..+.++.+.+|-.++..+..+...-. .-...++.++..++..+.|++++|--+|+.++..++..++...++.++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 3456667788899999999999998887654 123457889999999999999999999999999998888776544444
Q ss_pred HH
Q 000049 1778 PA 1779 (2629)
Q Consensus 1778 p~ 1779 (2629)
..
T Consensus 84 ~~ 85 (92)
T PF10363_consen 84 DE 85 (92)
T ss_pred HH
Confidence 43
|
|
| >KOG1837 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.5e+02 Score=43.87 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHH
Q 000049 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579 (2629)
Q Consensus 2514 l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~ 2579 (2629)
+.++....+....+++...|..|+..+..+..+-++.+.++++.++|.+-..+.|.+..|+..+-.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 677778888888899999999999999999999999999999999999999999888888766554
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=87.12 E-value=10 Score=49.02 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=102.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHH-hcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2229 ~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~-l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
-.+.-+.+.++.+++..|..|+.+|.. ..|-..+-||+..++..-++. +.. .+-......+..+..|+..-..++
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fIae~vs~ni~~-~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET---DSGLQQLLPYFVTFIAEGVSVNIVQ-NNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc---CccHHHHHHHHHHHHhhheeecccc-ccHHHHHHHHHHHHHHhcCCccch
Confidence 345556677777888999988888765 445444555544332211111 001 134455566666777777667789
Q ss_pred cCchHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHHHh-ccCChh----HHHHHHHHhhhcC--CHHHHHHHH
Q 000049 2308 KPFLPQLQTTFIKCL----------QDSTRTVRSSAALALGKLSA-LSTRVD----PLVGDLLSSLQVS--DAGIREAIL 2370 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L----------~d~~~~vR~~Aa~aLg~l~~-~~~~~~----~ll~~Ll~~l~~~--d~~vr~~~l 2370 (2629)
.||+-+|++.++.|+ .|.++.+|.-|+..++.+.. +....+ .++..+...+.+. .....+.++
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai 362 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAI 362 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence 999999999999876 22357899999999998844 222112 2333444555443 367788888
Q ss_pred HHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC
Q 000049 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403 (2629)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~ 2403 (2629)
..|.++....-..+.-+.....+..+...+...
T Consensus 363 ~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 363 AGLSELGHEVIRTVILPNLKEYNERLQSVLDVE 395 (576)
T ss_pred HHHHHhhhhhhhheeccchHHHHHHhhhhcccc
Confidence 888777654322222234445555555554443
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.2e+02 Score=39.93 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=99.0
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcC-----h---hhHhhhHHHHHHHHHHHhcCCC------------HHHHH
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SERRQ 1903 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-----~---~~l~~~l~~Ll~~L~~~L~~~~------------~~~R~ 1903 (2629)
.++..+..+......+|-+.....|..+.... . ..|++|+..++..+.....-+. .+.|.
T Consensus 291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRL 370 (559)
T ss_pred hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHH
Confidence 34444455555666688889999998876521 1 3467888888888887765221 24577
Q ss_pred HHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC--cHH
Q 000049 1904 VAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS--ILE 1980 (2629)
Q Consensus 1904 ~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~--d~~ 1980 (2629)
.....+.+++.-+|.. .+..+.-.+.+ ....++.-.++...+..++.+..++ -.+++|.+.+.++.- ...
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccchh
Confidence 7888888887777764 33333333333 3457888889988888877665543 356777777776643 334
Q ss_pred HHHHHHHHHHHHHHHhCh
Q 000049 1981 VRESAGLAFSTLFKSAGM 1998 (2629)
Q Consensus 1981 VR~~A~~al~~l~~~~g~ 1998 (2629)
+|..+...+|.+.+.+..
T Consensus 444 ~~~ts~ll~g~~~ew~~~ 461 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQ 461 (559)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899898889988876653
|
|
| >COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.3e+02 Score=40.16 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCCC--------chhhHHHHHHHhccC---CChHHHHHHHHHHHHHHHhhChhHHHhHhH
Q 000049 1631 PIPEVRSVAARAIGSLIRGMGEEN--------FPDLVSWLLDALKSD---NSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2629)
Q Consensus 1631 ~~~~VR~~A~~aL~~l~~~~g~~~--------~~~ll~~Ll~~L~~~---~~~~~R~~a~~~L~~i~~~~g~~~l~~llp 1699 (2629)
.....|..-.+|++.+...+-+.. -..++....+.+.+. ....+|-.++.+++++...+|-...+.++.
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ 287 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID 287 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH
Confidence 445566666677777666544321 112333333333332 224578889999999988777542222221
Q ss_pred ------------HHHHhhc--CCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCCh--------hHHHHH
Q 000049 1700 ------------DIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE--------SVRDAA 1757 (2629)
Q Consensus 1700 ------------~l~~~l~--~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~--------~VR~~a 1757 (2629)
.+...+. ..++-+-.+++..++ ++...+-++..-+ +.|.+.+++..+.. .+|+++
T Consensus 288 ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 288 IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeeccc
Confidence 1111111 124444444444444 5544444332222 55666677765432 467766
Q ss_pred HHHHHHHHHHhhhchhhh----HHHHHh-hccCCCchHHHHHHHHHHHHHH
Q 000049 1758 LGAGHVLVEHYATTSLPL----LLPAVE-DGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1758 l~al~~iv~~~~~~~i~~----llp~l~-~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
.-.++.+...++....+. +.--+. ..++|+.-.+|.++..++-+++
T Consensus 365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 555555555555443333 222333 3789999999999887777765
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=86.35 E-value=11 Score=48.08 Aligned_cols=114 Identities=20% Similarity=0.300 Sum_probs=76.2
Q ss_pred ccchhhHHHHHHHHhcC-------CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC---------CCCHhH
Q 000049 2225 KALQPLLPIFLQGLISG-------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------RFPWQV 2288 (2629)
Q Consensus 2225 k~l~~ilp~ll~~L~~~-------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~---------~~~~~v 2288 (2629)
.|+.+++|-|.+-+.++ +...-.....++..++..-. =.+.||+-+++++++.++-. ...|.+
T Consensus 206 ~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 206 PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 34555555555444332 22333344555666665543 45789998888888865521 246899
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Q 000049 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST--RTVRSSAALALGK 2339 (2629)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~--~~vR~~Aa~aLg~ 2339 (2629)
|..+..+|+.++++.+.......|.+..++.+.+.|+. ....--|..+|+.
T Consensus 285 Rd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 285 RDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 99999999999999998877778999999999999973 3334444444443
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.31 E-value=90 Score=38.12 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhh----hcHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK----YGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1339 l~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~----~~i~~~L~~~l-~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
++.++..+.++++.+.|..+-.|+..+-.--|.+..+. .+-.+.+...+ +...++.+-+.++.++..++-.-++.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 45567777776766778677777766665555544431 12333444333 44456777777777666666443321
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
-...+. . ..-+.+.+++ ...+ ....+++.+|+++.+|+-...++-
T Consensus 365 sa~~ie----~----------G~a~~avqAm----kahP-----------------~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 365 SAKAIE----A----------GAADLAVQAM----KAHP-----------------VAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHh----c----------chHHHHHHHH----HhCc-----------------HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 100000 0 0001111111 1111 123456778888888877655555
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
...+..-+..|+..-...|+.++.+|-.||..++-.
T Consensus 410 ~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 410 TILLANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred chHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 555555667777777778999999999999888754
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=86.26 E-value=6.4 Score=40.74 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=65.3
Q ss_pred cHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000049 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2629)
Q Consensus 1378 ~i~~~L~~~l~~---~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2629)
+++..+.+.+.+ +++...|..++.+++.+.+..+..+.++.+++.-.+...+..+ .+|+.|..+...++..+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 456666666665 5578888899999999999666656666666666666666655 89999999999999999988
Q ss_pred hHHhhHHHHHh
Q 000049 1455 GVKLVLPSLLK 1465 (2629)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2629)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
|
; GO: 0004674 protein serine/threonine kinase activity |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.45 E-value=28 Score=51.05 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhh
Q 000049 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2629)
+..-+..+++.+...++.+|..|...+++++...... ++|....+..+...|.+..+|...-..+..++..++ ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 3344666777788889999999999999999876544 344445555567778999999999998888887764 56
Q ss_pred HHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000049 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2629)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~ 1991 (2629)
+.+|++.++|...-...|.+..|-.+|...|..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999999999998888877665543
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=85.36 E-value=14 Score=45.84 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=96.6
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---------chhhHHHHHHHhc---c----CCCh
Q 000049 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK---S----DNSN 1672 (2629)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~---------~~~ll~~Ll~~L~---~----~~~~ 1672 (2629)
+...+..+++-++|.++.+++|..+.+|..+..++..+...++... .+-+-+.+...+. + +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3356778899999999999999999999999999999999776543 1222233333333 1 1222
Q ss_pred HHHHHHHHHHHHHHHhhC----hh---HHHhHhHH-HHHhhcC----CChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1673 VERSGAAQGLSEVLAALG----TV---YFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1673 ~~R~~a~~~L~~i~~~~g----~~---~l~~llp~-l~~~l~~----~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
..-..+..++-.++.... .. .+..++-. ++..+.. +.+.++...+..+..+...+|-....|+..+++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 222344455555544321 11 22333333 5554432 258899999999999999999999999999999
Q ss_pred HHHhhcCCCC
Q 000049 1741 AILDGLADEN 1750 (2629)
Q Consensus 1741 ~ll~~L~d~~ 1750 (2629)
.+.+.+.++.
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999887654
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.13 E-value=1.8e+02 Score=40.45 Aligned_cols=276 Identities=15% Similarity=0.116 Sum_probs=148.7
Q ss_pred cccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHHh
Q 000049 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRK 2302 (2629)
Q Consensus 2224 ~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~ 2302 (2629)
|-++++.+|.+.+++.++ +.-.++...+..+++.+. ..+.||..++...+-.++.. ......+..++..+|.++..
T Consensus 544 P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 544 PMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred CcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 678889999999999754 344567777999998887 88999999887766665543 23566788899999988876
Q ss_pred cCC-CccCchHHHHHHHHH----HcCCC--CHHHHHHHHHHHHHHHhcc--------------CC----------hhHHH
Q 000049 2303 GGI-ALKPFLPQLQTTFIK----CLQDS--TRTVRSSAALALGKLSALS--------------TR----------VDPLV 2351 (2629)
Q Consensus 2303 ~~~-~l~p~lp~L~~~~~k----~L~d~--~~~vR~~Aa~aLg~l~~~~--------------~~----------~~~ll 2351 (2629)
... ..-.|+-+|...++. ++... +.+-+...+.-++.+..+. |- +-.+.
T Consensus 621 ~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~ 700 (982)
T KOG2022|consen 621 LKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVL 700 (982)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHH
Confidence 542 222244444444443 22221 4444555554455443220 10 11122
Q ss_pred HHHHHhhhc------CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHH-HHHHHhc--C
Q 000049 2352 GDLLSSLQV------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI-LGIMSQC--M 2422 (2629)
Q Consensus 2352 ~~Ll~~l~~------~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~-Lg~L~~~--~ 2422 (2629)
.+++..++. .+.++-+..+..+..=+...+..+..++.+.+..++........-.+-...+.| +...... .
T Consensus 701 ~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~ 780 (982)
T KOG2022|consen 701 QKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCK 780 (982)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhcccccc
Confidence 223322221 234455555544444444555556678899999998875433321111111111 1111110 0
Q ss_pred C--hhHHHHHHHHHH---h-hcCCCCchhhHhHHHHHHHHHhhCCccccC-C-hhHHHHHHHHHhhhcCCChhHHHhHHH
Q 000049 2423 E--DGQLADLLQELL---N-LASSPSWAARHGSVLVFATFLRHNPSAISM-S-PLFLSILDRLKSSLKDEKFPLREASTK 2494 (2629)
Q Consensus 2423 ~--~~~~~~~l~~ll---~-~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~-~-~~~~~i~~~l~~~~~~~~~~ir~~a~~ 2494 (2629)
| ..++...+++.+ . ..-.++.+.....+..+..+++..|.-... . ++..-+..+....+++..+..-.++..
T Consensus 781 ~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~q 860 (982)
T KOG2022|consen 781 PLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQ 860 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 1 112333333322 1 112444444444555777888888876542 2 233334447777788877665555555
Q ss_pred HhHHHHhh
Q 000049 2495 ALGRLLLH 2502 (2629)
Q Consensus 2495 alg~ll~~ 2502 (2629)
-+..++..
T Consensus 861 F~t~~~~~ 868 (982)
T KOG2022|consen 861 FLTALATY 868 (982)
T ss_pred HHHHHHhh
Confidence 44444433
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.5e+02 Score=39.71 Aligned_cols=262 Identities=16% Similarity=0.113 Sum_probs=127.1
Q ss_pred HhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHhh--cccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhh
Q 000049 2072 LGTILPALLSAM-GDDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2629)
Q Consensus 2072 l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~--~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~ 2148 (2629)
+..++..++... ...++..-+.....++.++.. +..+.+..++..|....+.. .....+-.++.++++.
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S------ 245 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS------ 245 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC------
Confidence 344444444443 333344445667778887763 34577888888888775543 4555666677777742
Q ss_pred hhHHHHHHHHHHHhc--CC----ChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCC
Q 000049 2149 DEAPNMISTLIVLLS--DS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222 (2629)
Q Consensus 2149 ~~~~~il~~Ll~ll~--d~----d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~ 2222 (2629)
.+....+..|+..+. ++ +..+...|...++.++-..+++. +|.
T Consensus 246 ~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~-----------------------------~~~-- 294 (464)
T PF11864_consen 246 HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQG-----------------------------YPS-- 294 (464)
T ss_pred ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCC-----------------------------cce--
Confidence 223456677777773 22 22333344444444332222111 111
Q ss_pred CcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHH-hhcChhhhhhchhhhhHHHHHHhc---CCCC--------HhHHH
Q 000049 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELI-EVTSEQSLKEFVIPITGPLIRIIG---DRFP--------WQVKS 2290 (2629)
Q Consensus 2223 l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~-~~~~~~~l~p~v~~i~~~Li~~l~---~~~~--------~~vk~ 2290 (2629)
++-....++|.|...+..+++-+-......+..++ +..+..........+...+.++.. .... ..++.
T Consensus 295 l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (464)
T PF11864_consen 295 LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSS 374 (464)
T ss_pred ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHH
Confidence 11122237788888887665555445555555555 333322222222333222222211 1101 12332
Q ss_pred H---HHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---cCChhHHHHHHHHhhh--cCC
Q 000049 2291 A---ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQ--VSD 2362 (2629)
Q Consensus 2291 ~---al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~---~~~~~~ll~~Ll~~l~--~~d 2362 (2629)
. .+..+..+.+. + .+..--..+...|.++...-+++...... ...--.+ ++.+-.-+..+++.+- +.+
T Consensus 375 ~~~~l~~~ie~L~~~-~-~~~g~~~~~~~f~~~~~~~lp~s~~~~vl--~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~ 450 (464)
T PF11864_consen 375 NLHSLLSSIESLYEQ-H-DFNGPKDKLFNFFERVHSYLPDSSALLVL--FYEERSCSPSNPDWLDNLQKLLDRFYNRDRR 450 (464)
T ss_pred HHHHHHHHHHHHHhC-C-CcCccHHHHHHHHHHHhccCCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHHHHhCCCCC
Confidence 2 22223333333 1 12212355667776665554333333222 2221112 3445566667777654 345
Q ss_pred HHHHHHHHHHHHHH
Q 000049 2363 AGIREAILTALKGV 2376 (2629)
Q Consensus 2363 ~~vr~~~l~AL~~v 2376 (2629)
.++|-.+++.+.++
T Consensus 451 ~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 451 SEVRIKALDVLEEI 464 (464)
T ss_pred chHHHHHHHHHhhC
Confidence 88998888877653
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.68 E-value=8.8 Score=47.98 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch---hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHH
Q 000049 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2629)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2629)
..++..+.+.+..+|..|...+.++........ +..+++.+.....|.+..+|.+....+..++-..+++.+.++..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 334556788999999999999999887744332 34556666677789999999999988888777777777889999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
-+++.+..++....+++|.-+...+..+...+++....
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 99999999999999999999999999998887764433
|
|
| >PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] | Back alignment and domain information |
|---|
Probab=84.58 E-value=2.1e+02 Score=40.91 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000049 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2629)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~ 2548 (2629)
....+++.+...+..+++..-.....++..+..-..-. |. + ..+-+..-....|..-..++.....++.+++...|
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~-~~--~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~ 513 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFP-PK--K-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP 513 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccC-Cc--c-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 45677888888888888888777777777664433211 10 0 11112222222223333555666777777777777
Q ss_pred hhhhhhHH--HHHHHHHhhhcCCcchhhhhHHHHHHHHhc
Q 000049 2549 SAIMVHVA--LFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2629)
Q Consensus 2549 ~~v~~~l~--~l~p~l~~~~~~~~~~vk~aae~a~~~l~~ 2586 (2629)
+.+...+. ....++..++=.++..+..||..-+-.+++
T Consensus 514 ~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 514 SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 76666554 455666667666777777777766666665
|
The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain. |
| >KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.54 E-value=2.4e+02 Score=41.53 Aligned_cols=255 Identities=14% Similarity=0.107 Sum_probs=135.3
Q ss_pred HhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccC
Q 000049 2141 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2629)
Q Consensus 2141 ~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2629)
++.+......+...++.++..+...++.|...+..++-.++...-. +..... +....... ... .|
T Consensus 795 ~~~~~~~~~~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~----~~~~~s-~lF~~~~~----~~~------~g 859 (1364)
T KOG1823|consen 795 KSSDDSTVSQLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLD----QIESVS-ELFKLLAR----KRH------SG 859 (1364)
T ss_pred cCccHhHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhcccc----HHHHHH-HHHHHHHH----Hhh------cC
Confidence 3444556666777778888888877888888888887777653211 100000 00000000 000 00
Q ss_pred CCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHH
Q 000049 2221 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 2300 (2629)
Q Consensus 2221 ~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~ 2300 (2629)
+ | ..+-+.-.+...++..++..+| +.+-+...+..-+-++-.|-.++.-...++.++..++
T Consensus 860 -s-~---------------~~~~el~q~~~k~~t~lI~~~~--s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~ 920 (1364)
T KOG1823|consen 860 -S-P---------------STNFELCQDSFKGFTALIAQVG--SVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALV 920 (1364)
T ss_pred -C-C---------------cccHHHHHHHHHHHHHHHHHhc--ceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 0 0 0133455667788888888776 3444445555556666666545555556666666665
Q ss_pred HhcCCCccCchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 000049 2301 RKGGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2629)
Q Consensus 2301 ~~~~~~l~p~lp~L~~~~~k~L~d-~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2629)
.+ + ...|-+..+++.+-+.+.. ...+.|..+...+-......++..+.+...++.+......-|+.....=+.
T Consensus 921 ~r-~-i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~~~s~s~~~k~~~~~V~~l~~~~esg~esvr~~~al---- 994 (1364)
T KOG1823|consen 921 SR-K-IMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSFLGSKSKLEKQMEFMVDNLLYEVESGRESVRFSPAL---- 994 (1364)
T ss_pred hc-c-ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhcccchhcccHHH----
Confidence 43 1 2233456677777765544 477788888777666644567778888888888765432222222200000
Q ss_pred cCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 000049 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 2439 (2629)
Q Consensus 2380 ~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~ 2439 (2629)
+.+.+..-.+.+....+.|....+|.++...+..+-.-...+.+.=+.+.+..|..
T Consensus 995 ----l~e~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~e~~~~~~~~l~~~~~ 1050 (1364)
T KOG1823|consen 995 ----LFEILSNFFIALVLVKINDDEPVCREMASMLIKVLYDKEDNELFNLLERLLHEWVG 1050 (1364)
T ss_pred ----HHHHhhccchhhcccccccchHHHHHHHHHHHHHHhCHhhhHHHhHHHHHHHHHHh
Confidence 00111112223333345566777888777766655443333333333334445543
|
|
| >KOG3961 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.38 E-value=2.1 Score=47.86 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh---c
Q 000049 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK---G 2303 (2629)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~---~ 2303 (2629)
....+|.|.+||...+-+-|-.|-.++.++..+.| +.+-|.+++++.||-+.+..+ +.++....|.+|..+... +
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34689999999988877788889999999998888 889999999999999988876 888999999999887764 5
Q ss_pred CCCccCchHHHHHHH
Q 000049 2304 GIALKPFLPQLQTTF 2318 (2629)
Q Consensus 2304 ~~~l~p~lp~L~~~~ 2318 (2629)
|..+.||.-||.+.+
T Consensus 190 G~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVL 204 (262)
T ss_pred chhhhhHHHHhhhhh
Confidence 678889988888765
|
|
| >KOG1837 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.93 E-value=2.6e+02 Score=41.47 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q 000049 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2629)
Q Consensus 2110 ~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~ 2175 (2629)
+.++...++....++++..|..|+..+..+....+..+...+++.++.|-++++|.+++|-..+..
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888665544
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=83.85 E-value=67 Score=41.41 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhh
Q 000049 2403 DDDHVRVSAASILGIMSQCM--EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS 2480 (2629)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~~--~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~ 2480 (2629)
.++.-|..|-+.+-++.... +.+--..+.+.+..-....+...+..++.+++.+...+|+-+...+....+...+.+
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d- 158 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID- 158 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh-
Confidence 35667778888887777662 211112344444443344555567788899999999999887766555555555544
Q ss_pred hcCCChhHHHhHHHHhHHHHhhhhhcC-CCCchhhHHHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCchhh---
Q 000049 2481 LKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAI--- 2551 (2629)
Q Consensus 2481 ~~~~~~~ir~~a~~alg~ll~~~~~~~-~~~~~~l~~~l~~l~~~----l~~~~~-~vr~~al~~l~~~a~~~~~~v--- 2551 (2629)
....+.+..+.++=+++.+...+. .-..-++..++.++... .++++. +.-+.+..++.++-+.-|-.+
T Consensus 159 ---~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 159 ---GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred ---ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 333355566666666655543321 11113466677777765 333332 345567777777777655443
Q ss_pred hhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccC
Q 000049 2552 MVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590 (2629)
Q Consensus 2552 ~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~ 2590 (2629)
.+-. .-+..+...++-++..+|.+...-+..+|++..-
T Consensus 236 ~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 236 MNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred cCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 1111 3466677788888888999999999999999774
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=82.76 E-value=96 Score=37.34 Aligned_cols=130 Identities=15% Similarity=-0.001 Sum_probs=77.2
Q ss_pred hcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh
Q 000049 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 1387 (2629)
Q Consensus 1308 ~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l 1387 (2629)
.-+..+++++....++|+.+...-. .....+-..+..|.+.+....+..+...+..+.+.- + ...++|+..+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~------r~f~~L~~~L 80 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-D------RHFPFLQPLL 80 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-c------hHHHHHHHHH
Confidence 4455677788888888887764432 333444455555555544344444445455554421 1 1112222221
Q ss_pred ------------cCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Q 000049 1388 ------------ADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-SDQVVAVREAAECAARAMMS 1449 (2629)
Q Consensus 1388 ------------~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l-~D~~~~VR~aa~~al~~i~~ 1449 (2629)
.++..|....+....+..++...++ +-.++++.+..++ ++.++.++..+.+++..+.+
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 1223566666656677777776664 5567788888888 78888899888888888873
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.53 E-value=69 Score=38.84 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCc----hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
.+.+++.+.+|.||.+|+.-+-.+... +- .+-...++.+.+.+.++.. .+.|..++.+..--..+....++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 366789999999999999887766544 21 1224567777777776655 33344443321000001111222244
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
..+...+.+..+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 444455555555556667777777765
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.26 E-value=1.3e+02 Score=39.75 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhcccccHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHhcCC
Q 000049 2090 VQSLAKEAAETVTLVIDEEGVESLVS-ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDS 2165 (2629)
Q Consensus 2090 vr~~a~~al~~l~~~~~~~~~~~ll~-~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~-~~~~il~~Ll~ll~d~ 2165 (2629)
-|-.+..+++.++..+..+....+.. .|+..+++.....|..++..+..++......... ..+.+...|...+.++
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 46678889999988887777777777 4888899998999999999999998865432211 1345556666666643
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.22 E-value=1.5e+02 Score=37.29 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=105.9
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccc
Q 000049 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2629)
Q Consensus 1736 ~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~ 1815 (2629)
...+..-+..+.|++-.||..|++.+..+++. +.+..+.|.+.+.+. .. .++.++.++. .
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLn------k~----sl~~Lf~~~~-------~ 119 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLN------KA----SLTGLFGQIE-------V 119 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHH------HH----HHHHHHhhhh-------h
Confidence 45677777888888899999999998887764 333334444433332 01 1122221110 0
Q ss_pred cCCCCCCcccHHHHHHHH--------HHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHH
Q 000049 1816 EGGSDDEGASTEAHGRAI--------IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2629)
Q Consensus 1816 ~~~~ede~~~~~~~~~~l--------~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll 1887 (2629)
+ |+...+.....+ .+++..+.-..++..+++.+.|...+--...+..++.+-...+..-..-+..|.
T Consensus 120 --~---D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa 194 (460)
T KOG2213|consen 120 --G---DEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELA 194 (460)
T ss_pred --h---hHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHH
Confidence 0 011111111111 122233333445666667777777776666777777665433222122233333
Q ss_pred HHHHHH-----hc--CCCHHHHHHHH--HHHHHHHHHhccc-hhhhHHHHHhhhcCCCC-hhHHHHHHHHHHHHHHhhch
Q 000049 1888 NTLISS-----LA--SSSSERRQVAG--RALGELVRKLGER-VLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGK 1956 (2629)
Q Consensus 1888 ~~L~~~-----L~--~~~~~~R~~A~--~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~-~~vR~~a~~aL~~li~~~~~ 1956 (2629)
...-.. +. |.+...|...+ .++.-+.+..+.. ++.++-.-+...-.+.. .+.+...+.+|+++...+..
T Consensus 195 ~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tta 274 (460)
T KOG2213|consen 195 EEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTA 274 (460)
T ss_pred HHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchH
Confidence 222111 11 22222333221 1111222222221 22222222221112222 34456778888887665544
Q ss_pred hhHHHhHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhC
Q 000049 1957 SQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1957 ~~l~~~l~~ll~~l~~~L~--d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
+...+.++.|+..+...+- +.-++....-.+++-.+..+.|
T Consensus 275 q~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 275 QAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666655433 2223333333444444444444
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=81.03 E-value=1.7e+02 Score=40.33 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHHHHhcChhhHhhhHH-------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc--hhhhHHHH
Q 000049 1857 SLSVRQAALHVWKTIVANTPKTLKEIMP-------VLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPI 1927 (2629)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~-------~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~--~l~~llp~ 1927 (2629)
+..+-+++..++..+....+. ...++. ..++.|++++...+..+-..++.+|..+....... +-.+.+|-
T Consensus 532 n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~ 610 (717)
T KOG1048|consen 532 NDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPD 610 (717)
T ss_pred chHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHH
Confidence 445667777777776654332 122222 23567888888888888888888888776433211 22445555
Q ss_pred HhhhcCC------CChhHHHHHHHHHHHHHHh
Q 000049 1928 LSRGLKD------PSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1928 L~~~L~d------~~~~vR~~a~~aL~~li~~ 1953 (2629)
|.+.|.+ .+.++...+|..|.+++..
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 5555543 2367788899999988743
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=80.78 E-value=12 Score=38.50 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhcc-chHhhHHhHHHHHHhhc
Q 000049 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGL 1746 (2629)
Q Consensus 1671 ~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~-~f~p~l~~ii~~ll~~L 1746 (2629)
+..+|..+..+++.+++..| .......|.++..++. ..+++|..++.++..+...+.+ +..|.++.++..++++.
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 45567778888888888555 5566667777766654 3677999999999999888874 45566666666665543
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.62 E-value=50 Score=47.45 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=117.8
Q ss_pred CcHHHHHHHHHhhhhhHhhhccch---HHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHhh----hCcchhhhhcHHH
Q 000049 1312 PSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKG----FGISSLKKYGIAA 1381 (2629)
Q Consensus 1312 ~~~~Vq~~~~~~L~~l~~~~~~~~---~~ll~~ll~~L~~~~---~~~~R~~Aa~~L~~l~~~----lg~~~l~~~~i~~ 1381 (2629)
+--+|+....+|+-.++...++.. -..+-+++..+.+.. +...-+.+..||..+... ++.+.+. .+++
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~--~lid 931 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL--DLID 931 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH--HHHH
Confidence 344566666677777666655432 122233333444332 234455566667666543 2223332 5666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc---------------------------hhHHHHHHHHHHHHcCCCCH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLF---------------------------EPYVIQMLPLLLVAFSDQVV 1434 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~---------------------------~~~v~~ilp~ll~~l~D~~~ 1434 (2629)
.+....+.+.|-+.--.|+-.|-.+++.+.+.+ +..+.-++..+..+..|..+
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence 666665444454444445554544444332211 11233456667778899999
Q ss_pred HHHHHHHHHHHHHHHh----hcHHhH-----HhhHHHHHhhhc---cCChhhhH-------HHHHHHHHHHhhCchhhhh
Q 000049 1435 AVREAAECAARAMMSQ----LSAQGV-----KLVLPSLLKGLE---DKAWRTKQ-------SSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1435 ~VR~aa~~al~~i~~~----l~~~~v-----~~ilp~Ll~~L~---~~~w~~r~-------~a~~~L~~la~~~p~~l~~ 1495 (2629)
.||..|++.+-+++.. +++..+ ..++| ++.+-. -++|+.+. ..+..++.++...++++..
T Consensus 1012 eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~p-LLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMP-LLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred HHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHH-HhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999888777653 344323 23333 332111 14565443 3677778888766666533
Q ss_pred h--c-------cchHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1496 C--L-------PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1496 ~--L-------~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
. + ..++..+.....|.++++..+|.+++..+..
T Consensus 1091 llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 2 2 2233344445568899999999999887654
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.51 E-value=1.3e+02 Score=44.45 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=86.0
Q ss_pred HhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHH----HHHHhhcCCCChhHHHHHHHHHHHHHHhchhhh
Q 000049 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV----SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2072 l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll----~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
++.-+..+++.+...|+..+..+...+..++...+.+....++ ..+.+...|.+..+|..+...+..+....+..+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666777788888988888888887765543333333 334455678999999999999999999989999
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~ 2182 (2629)
++|+..+++..+....|.+..|-.+|...+.....
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 99999999999988889998888887777766554
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=80.17 E-value=17 Score=37.51 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=63.3
Q ss_pred cHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000049 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~---~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2629)
+++..+.+.+.|.+ +...|..++.+++.+.+..|.....+.+++.-.+...+..+ ..|..|..+...+...+.+.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHhCCHH
Confidence 45666666665543 66778899999999999877666666666666666677644 69999999999999999887
Q ss_pred hHHhhHHHHH
Q 000049 1455 GVKLVLPSLL 1464 (2629)
Q Consensus 1455 ~v~~ilp~Ll 1464 (2629)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7665555443
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=80.12 E-value=12 Score=41.37 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhcCCCChhHHHHHHHh
Q 000049 1144 YNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 1222 (2629)
Q Consensus 1144 ~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~ 1222 (2629)
..+|++.+.+++.++ ..||+.|++.+..+.+.... +-.........|..+.+.+.+- -
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-----------~~~~~~~~L~iL~~l~eEi~~~--------~-- 60 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-----------SPQHLELVLRILRILPEEITDF--------R-- 60 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-----------THHHHHHHHHHHHHHHHHHHTS--------H--
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-----------chhHHHHHHHHHHHHHHHHHhh--------h--
Confidence 468999999999986 47899999988888876531 1134556666666666544320 0
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhH
Q 000049 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1302 (2629)
Q Consensus 1223 ~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~ 1302 (2629)
+ .+.....|....++.... .+.++..+.+.+...... ....+...++.+++...+..+...-.-..++
T Consensus 61 ~--~~~~~~r~~~l~~~l~~~--------~~~i~~~l~~~l~~~~~~--~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l 128 (148)
T PF08389_consen 61 R--SSLSQERRRELKDALRSN--------SPDILEILSQILSQSSSE--ANEELVKAALKCLKSWISWIPIELIINSNLL 128 (148)
T ss_dssp C--CHSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCHC--CHHHHHHHHHHHHHHHTTTS-HHHHHSSSHH
T ss_pred c--hhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHHHhCCHHHhccHHHH
Confidence 0 011222233333332221 344566666666542111 1134455555555555443322111112366
Q ss_pred HHHHhhcCCCcHHHHHHHHHhh
Q 000049 1303 DKLLDVLNTPSEAVQRAVSSCL 1324 (2629)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L 1324 (2629)
+.+.+.+.++ +.+..+++||
T Consensus 129 ~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 129 NLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHcCCH--HHHHHHHHhC
Confidence 6666676444 3466666664
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2629 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-27 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-23 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-23 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 421 bits (1083), Expect = e-125
Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 18/472 (3%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386
S ++ ++ L +L R A +A + G I L +G
Sbjct: 4 HHHSDSQQSIKVLEELFQKL-SVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446
+ D+ +A A+ A L EPY++Q++P + ++ ++ A +
Sbjct: 63 IKDKKTAANAMQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLIS 121
Query: 1447 MMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
+++ ++ +K +LP L + + W+ K + + AM A Q++ +P+++P L+
Sbjct: 122 IVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
E + DT +V++A A+ + + N +I +P+L+ + DP ++ +L TTF
Sbjct: 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTF 240
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
V V +L+++VP++ RGL ER K+K+A I+ NMC LV +P+ + P++G LLP +K
Sbjct: 241 VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300
Query: 1626 KVLVDP-IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684
PE R V RA+ +L R +G D + L A + S Q ++E
Sbjct: 301 SNFATIADPEAREVTLRALKTLRR-VGNVGEDDAIPELSHA-------GDVSTTLQVVNE 352
Query: 1685 VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-----YLPRSLGVQFQNYLQQVL 1739
+L I+ + I R + Y+ L + +
Sbjct: 353 LLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEF 412
Query: 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1791
+ D + ++ +L R
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRY 464
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-26
Identities = 65/404 (16%), Positives = 139/404 (34%), Gaps = 46/404 (11%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR 1709
+ ++ L L ++ R A ++ L + EH ++ + ++
Sbjct: 9 SQQSIKVLEELFQKLSVATAD-NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67
Query: 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769
+ +L + Y+ Q++PAI ++++ ++ A +V
Sbjct: 68 TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127
Query: 1770 TTSLPLLLPAVEDGIFNDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828
++ LLP + + I N W+ + + + ++ + E
Sbjct: 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE------------ 175
Query: 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK---TIVANTPKTLKEIMPV 1885
+I VL +E + D V+ AA V N K+I
Sbjct: 176 ----LIPVL-----SETM-------WDTKKEVKAAATAAMTKATETVDN-----KDIER- 213
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ +LI +A + V V ++ L ++P+LSRGL + ++ +
Sbjct: 214 FIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV 273
Query: 1946 GLSEVMAS--AGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGMQAID 2002
+ + M + F+ +L+P +++ + E RE A TL + G D
Sbjct: 274 -IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR-VGNVGED 331
Query: 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVH 2046
+ +P L HA + T + LK ++ + +
Sbjct: 332 DAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGA 375
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 7e-15
Identities = 37/256 (14%), Positives = 86/256 (33%), Gaps = 40/256 (15%)
Query: 1874 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS--IIPILSRG 1931
+ + + ++ L L+ ++++ R + + L++G
Sbjct: 3 HHHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1932 LKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
+KD +A+ S + ++ +L+P I T + E++ A
Sbjct: 63 IKDKKTAANAMQAV--AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLI 120
Query: 1991 TLFKSAGMQAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
++ + AI ++P L +A+ + Q L
Sbjct: 121 SIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILA------------------------ 156
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
A A+ + A + + ++P L M D +V++ A A T +D
Sbjct: 157 --------AFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208
Query: 2108 EGVESLVSELLKGVGD 2123
+ +E + L++ + D
Sbjct: 209 KDIERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-10
Identities = 53/345 (15%), Positives = 117/345 (33%), Gaps = 21/345 (6%)
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
L+ + ++ + E + VA L +V + + +++P L+ + + + + + +
Sbjct: 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAIL 155
Query: 1946 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005
M A K Q+ M ELIP + + D+ EV+ +A A + ++ + I+ +
Sbjct: 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI 215
Query: 2006 PTLLHALEDDQTSDTALDGLKQILSVR-----TTAVLPHILPKLVHLPLSAF-------- 2052
P+L+ + D + L V T +++ +L + ++ +
Sbjct: 216 PSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII 275
Query: 2053 -NAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGV 2110
N L +V P LG +LP L S D + + + A + TL
Sbjct: 276 DNMCKLVEDPQVIAP----FLGKLLPGLKSNFATIADPEAREVTLRALK--TLRRVGNVG 329
Query: 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170
E L GD +++ + L +V+ + + LI
Sbjct: 330 EDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWF 389
Query: 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
++ + + + ++ G
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE 434
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-10
Identities = 55/447 (12%), Positives = 139/447 (31%), Gaps = 82/447 (18%)
Query: 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTAL 2022
+++ + L + + R ++ ++ + L ++D +T+ A+
Sbjct: 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAM 73
Query: 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082
+ I + L E ++ ++PA+ +
Sbjct: 74 QAVAHIAN-----------------------QSNLSPSVEP-------YIVQLVPAICTN 103
Query: 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYK 2141
G+ D ++QS+A E ++ ++ +++L+ L + + + +
Sbjct: 104 AGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP-KEVQPSYIKVIRDAI 2200
+K + P +I L + D+ AAA A+++ +V K+++ +I + I
Sbjct: 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCI 222
Query: 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 2260
+ + G P L ++P+ +GL ++ ++A+
Sbjct: 223 ADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV--------- 273
Query: 2261 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320
I + +++ D + PFL +L
Sbjct: 274 -----------IIDNMCKLVEDP---------------------QVIAPFLGKLLPGLKS 301
Query: 2321 CLQDSTR-TVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379
R AL L + + ++S AG L + +LK
Sbjct: 302 NFATIADPEAREVTLRALKTLRRVGNVGEDDAIP-----ELSHAGDVSTTLQVVNELLKD 356
Query: 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ + + + + + +
Sbjct: 357 ETVAPRFKIVVEYIAAIGADLIDERII 383
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-07
Identities = 32/219 (14%), Positives = 81/219 (36%), Gaps = 13/219 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208
++ ++ L LS + + ++ + E + +DK+
Sbjct: 10 QQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKT 68
Query: 2209 RKKKGGPILIPGFC--LPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
+ L +++P L+P + E++ A+ L ++ +
Sbjct: 69 AANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322
++K ++P L I + WQ K AIL+ S ++ + +P+L + +
Sbjct: 129 VAIK-ALLP---HLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM 184
Query: 2323 QDSTRTVRSSAALALGKLSALST--RVDPLVGDLLSSLQ 2359
D+ + V+++A A+ K + ++ + L+ +
Sbjct: 185 WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-05
Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 35/240 (14%)
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
+ S + ++ +L L V+ A R I + + L G + V + L +
Sbjct: 7 SDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLN--GNIIEHDVPEHFFGELAKGI- 63
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQ-----LADLLQELLNLASSPSW----AARHGSVLV 2452
D +A + ++ + L+ + A + A + +
Sbjct: 64 -KDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI 122
Query: 2453 FATFLRHNPSAISMSPLFLSILDRLKSSLKDE-KFPLREASTKALGRLLLHQIQSGPANT 2511
NP AI +L L +++ + K+ + A A + + +
Sbjct: 123 VNAV---NPVAIKA------LLPHLTNAIVETNKWQEKIAILAAFSAM----VDAAKDQV 169
Query: 2512 TV-VVDILASVVSALHDDSSEVRRRALSALKSVAK--ANPSAIMVHVALFGPALAECLKD 2568
+ + +++ + + D EV+ A +A+ + N + F P+L +C+ D
Sbjct: 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-04
Identities = 51/329 (15%), Positives = 118/329 (35%), Gaps = 44/329 (13%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLY--IRDIGLGGDNVDAGWL 1192
LF+ LS + + R A +A+ + G++ ++ G +
Sbjct: 19 LFQKLSVATADNRHEIASEVASF-------LNGNIIEHDVPEHFFGELAKGIKDKKTA-A 70
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
A+A + L P I+ + I + + +++ I I++
Sbjct: 71 NAMQ-AVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA--KHLAKDDPKVHA-----VVD 1303
+ L P N + + +EK LA + A ++
Sbjct: 130 AIKALLPHLTNAIVETNKWQEK-----------IAILAAFSAMVDAAKDQVALRMPELIP 178
Query: 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGL 1362
L + + + V+ A ++ ++ +++ + + L+ + + E L
Sbjct: 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPE---TVHLL 235
Query: 1363 AGV--VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYV 1418
V ++L + L GL +R + +R+ A++ + +C+ + ++ P++
Sbjct: 236 GATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVI-IDNMCKLVEDPQVIAPFL 292
Query: 1419 IQMLPLLLVAFSDQVVAVREAAECAARAM 1447
++LP L F+ +A EA E RA+
Sbjct: 293 GKLLPGLKSNFAT--IADPEAREVTLRAL 319
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 330 bits (846), Expect = 6e-93
Identities = 173/1164 (14%), Positives = 388/1164 (33%), Gaps = 115/1164 (9%)
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS 1349
+ DD VV +L +L + VQ CL PL+ +++ + L M S
Sbjct: 38 SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97
Query: 1350 DKYGERRGAAFGLAGVVK-------GFGISSLKKYGIAATLREGLADRNSAKRREGALLA 1402
DK R ++ GL V+ G +++ I L +A + + AL
Sbjct: 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157
Query: 1403 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462
+ + G L + +L LL + +AVR+ A ++ ++
Sbjct: 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 217
Query: 1463 LLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
LL L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++
Sbjct: 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277
Query: 1522 ALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
A + P +++++ L LT DPN + + D +
Sbjct: 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
+ S + ++ AA+ + + S T + + + + P + + V++
Sbjct: 338 EYSDD---DDMSWKVRRAAAKCLDAVVS--TRHEMLPEFYKTVSPALISRFKEREENVKA 392
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
A SL++ ++ ++ + ++ +I
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-----------------QVPNI 435
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES--VRD 1755
+ + + + R + L L ++ ++P I+ L D++ S ++
Sbjct: 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 495
Query: 1756 AALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
AL +V++ +++ L+P V + + ++I ++ + L+ +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI----- 550
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+ L + S D + I+ L D+ V++ A+ I
Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAA--------------DIDQEVKERAISCMGQI 596
Query: 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVA--GRALGELVRKLGERVLPSIIPILS 1929
+ N L +P + + L + + V G ++ VL +PIL+
Sbjct: 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 656
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
L+ + + G L ++ + S + +D ++ + + +S + V + A
Sbjct: 657 SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 716
Query: 1990 STLFK---SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL-SVRTTAVLPHILPKLV 2045
+TL K S+ + I+ L+ + AL + ++ T L+
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105
+ + + + + + + + A
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC-------------------------- 810
Query: 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165
+ ++V + ++ V +++++ L+ + L + S ++ S
Sbjct: 811 -PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL-SGQLELKSVILEAFSSP 868
Query: 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 2225
+AA AL + E P ++ I + K L
Sbjct: 869 SEEVKSAASYALGSISVGNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKP 927
Query: 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285
++ + + L+ R A LG+L + E L +
Sbjct: 928 YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISG---------S 978
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL----- 2340
+S++++ + I + P L F+K L+D VR A +
Sbjct: 979 SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1038
Query: 2341 SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400
S + +D ++ L + +V IRE + G KH +V + IR +
Sbjct: 1039 SLIRDLLDTVLPHLYNETKVRKELIREVEM----GPFKH---TVDDGLDIRKAAFECMYT 1091
Query: 2401 YHDDDHVRVSAASILGIMSQCMED 2424
D R+ L + ++D
Sbjct: 1092 LLDSCLDRLDIFEFLNHVEDGLKD 1115
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 270 bits (691), Expect = 1e-73
Identities = 170/1132 (15%), Positives = 371/1132 (32%), Gaps = 90/1132 (7%)
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
L+ + + + K+V + ++L D + +VQ+ L + S +K ++ ++V
Sbjct: 30 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQ 1598
TL + + + I L+T A S + L V + + R SA K++
Sbjct: 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 1599 IVGNMCSLVTE-----PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
+ ++ + ++ + +L + L P VR A+G L+ G
Sbjct: 150 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRA 1710
F DL+ LL L ++S Q ++ + G Y E I+P +++ C+
Sbjct: 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 269
Query: 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYA 1769
+R+ + F+ R + ++ ++ L L D N + D + +
Sbjct: 270 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329
Query: 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829
+ +W++R+++ + L + T + L E A
Sbjct: 330 --DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV----VSTRHEMLPEFYKTVSPALISRF 383
Query: 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889
V + +V A + L+ +P ++
Sbjct: 384 KEREENV-----KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKDPSASR--RQGVC 1944
L + S + RQ L ELV L + +P ++P + L D S+S +
Sbjct: 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
L ++ + + L+P + + D ++ A L L K
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP------ 552
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
D +S A +K + T + + + + +G +
Sbjct: 553 --------LDQPSSFDATPYIKDLF----TCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 2065 GPGLNFHLGTILPALLSAMGDDDMDVQSLA--KEAAETVTLVIDEEGVESLVSELLKGVG 2122
G L L L L + ++ + ++ A + + + V L +
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEA-PNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
NQ +++ + + KN L ++ L L+S+SD A L+ +
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 2182 ASVPK-------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIF 2234
P + I ++R + +++ G + L +
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
+A +Q+ + + + + KE + + + R ++ L
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354
+L + + +L++ ++ + V+S+A+ ALG +S +
Sbjct: 841 SLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYL---PF 894
Query: 2355 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 2414
+ S + +L +LK ++ A ++++L ++ R A
Sbjct: 895 VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 954
Query: 2415 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 2474
LG ++ + L L L S S AR V + +P I PL + +
Sbjct: 955 LGKLTLIDPETLLPRLKGYL----ISGSSYARSSVVTAVKFTISDHPQPI--DPLLKNCI 1008
Query: 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH-------- 2526
+L+D +R + ++ ++ +L + +
Sbjct: 1009 GDFLKTLEDPDLNVRRVALVTFNSAAHNK---PSLIRDLLDTVLPHLYNETKVRKELIRE 1065
Query: 2527 ----------DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD 2568
DD ++R+ A + ++ + + + F + + LKD
Sbjct: 1066 VEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGLKD 1115
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 199 bits (505), Expect = 3e-51
Identities = 162/1210 (13%), Positives = 372/1210 (30%), Gaps = 151/1210 (12%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191
S L + ++ S+ + R A L T L + S + + ++ + V
Sbjct: 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV---- 64
Query: 1192 LGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN 1251
+ L ++ + I+ L + + +R +I + +
Sbjct: 65 --QNLAVKCLGPLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGELPPAS 121
Query: 1252 V-----SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL 1306
+ + L + +E + E + I L++ +++ LL
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181
Query: 1307 DVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGV 1365
L +P AV++ L L+ S + L+ LL +L K+D R +A +
Sbjct: 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241
Query: 1366 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425
+ G + L + + + RE + AFE + + P+V ++ +
Sbjct: 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301
Query: 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 1485
L + + + AM + +D +W+ ++++ + L A+
Sbjct: 302 LKYLTYDPNYNYDDEDEDENAMDA-DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360
Query: 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-------------- 1531
+ L + + P L + V++ A + +
Sbjct: 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420
Query: 1532 --------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIV 1581
++ ++V L + + + T+ +L + + +LVP +
Sbjct: 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
Query: 1582 HRGLRERSAETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++S+ + K A + P+ P++ L+P V + DP ++ S A
Sbjct: 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEAL 540
Query: 1641 RAIGSL---IRGMGEENFPDLVSWL-------LDALKSDNSNVE-RSGAAQGLSEVLAAL 1689
L IR + + + D ++ + LK+ + + E + A + +++ L
Sbjct: 541 LVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 1690 GTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747
G + I + L L + + L + +P + L
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 1748 DENESVRDAALGAGHVLVEHYATTSLP----LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
+++ L A +L+++Y+ + +L + I + + Q ++ L L
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 1804 FKVAGTSGKAL---------LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM--- 1851
+ K L +G + A ++ N L
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 1852 ---VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE-RRQVAGR 1907
+L+ +Q+ + K + A T KE V+ + S S++ R +A
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQG------------------------- 1942
+LGE+ + + ++ PS +
Sbjct: 841 SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEIT 900
Query: 1943 --------VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994
+ L E+++SA L +++ + + + R L
Sbjct: 901 SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 960
Query: 1995 SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN- 2053
+ + L+ + + +K +S + P + + L
Sbjct: 961 IDPETLLPRLKGYLIS--GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF-LKTLED 1017
Query: 2054 ---------AHALGALAEVAGPGLNFHLGTILPALLS------------AMG------DD 2086
+ A + L T+LP L + MG DD
Sbjct: 1018 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDD 1077
Query: 2087 DMDVQSLAKEAAET-VTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 2145
+D++ A E T + +D + ++ + G+ D I+ + ++
Sbjct: 1078 GLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPS 1136
Query: 2146 YLVDEAPNMISTLIVLLS------------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
++ ++ L + + +A A++ ++ E P
Sbjct: 1137 AVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMS 1196
Query: 2194 KVIRDAISTS 2203
+ S
Sbjct: 1197 EFQSQISSNP 1206
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 157 bits (397), Expect = 2e-38
Identities = 150/898 (16%), Positives = 306/898 (34%), Gaps = 82/898 (9%)
Query: 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777
L L + + ++V+ IL L D+N V++ A+ LV + ++
Sbjct: 29 DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88
Query: 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837
+ + +D ++R S L ++ ++ S + L + I L
Sbjct: 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL----------AANVCKKITGRL 138
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897
+ +SV+ AL + +++ L P ++ L+ L S
Sbjct: 139 -----------TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGK 1956
R+ ALG LV G V +I L L K+ S S + ++ + AG
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALE 2013
++ +++++IP + E+RE AF + + + + I+ L L
Sbjct: 248 -RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN-------AHALGALAEVAGP 2066
D + + + + + A L A+
Sbjct: 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
L T+ PAL+S + + +V++ A ++ + ++
Sbjct: 367 MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186
L + PN++ L + + T + L+ +V +P
Sbjct: 427 -------------------MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467
Query: 2187 EVQPSYIKVIRDAISTSRDKE--RRKKKGGPILIPGFC-------LPKALQPLLPIFLQG 2237
+ ++ I + DK K + +Q L+P +
Sbjct: 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 527
Query: 2238 LISGSAELREQAALGLGELIEV------TSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKS 2290
+ ++ +A L +L++V S ++ + I+ + Q VK
Sbjct: 528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKE 587
Query: 2291 AILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 2350
+S + II G L LP F++ L++ + + AL L S L + P+
Sbjct: 588 RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPV 647
Query: 2351 VGD----LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+G+ L S L+ + ++ L+AL ++K+ S+++A+ V L L+ D H
Sbjct: 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 2407 VRVSAASILGIMSQCMED---GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463
V A S L +++ +L EL+ L SP S ++ F +
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAML--DFFQALVVT 765
Query: 2464 ISMSPLFLSILDRLKSSLKDEKFP-LREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
+ + ++ +L L + + + S ++ + + ++ P VV V
Sbjct: 766 GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 825
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ +R AL +L V + + + + E S V+ AA
Sbjct: 826 KN-SRSTDSIRLLALLSLGEVGHHIDLSGQLELK---SVILEAFSSPSEEVKSAASYA 879
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 142 bits (358), Expect = 7e-34
Identities = 150/1006 (14%), Positives = 308/1006 (30%), Gaps = 141/1006 (14%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA--VHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ + +DP + + ED
Sbjct: 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380
Query: 1178 RDIGLGGDNV----------------DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLI 1221
+NV A+ + +P I+ L
Sbjct: 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440
Query: 1222 SRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
+ + + + R N +++ ++ +L P LN K+S ++
Sbjct: 441 -KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN----LKI 495
Query: 1279 GVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ-----------RAVSSCLS 1325
+ + + + P V A+V ++ + P + + +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
P L + + +L +D E + A G + +L
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
+N R L P + + +P+L A++ A
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 1446 AMM----SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
++ L+A + VL L + + Q ++ L +A P LS+ I+
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
+L L + A L +++ LL LT P
Sbjct: 736 NELIG-LVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP------------ 782
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
V + S AL ++S + K + C PK+ +G +
Sbjct: 783 -------VYSQSTAL--------THKQSYYSIAKCVAALTRAC-----PKEGPAVVGQFI 822
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
+VK +R +A ++G + + +L S +L+A S + V +S A+
Sbjct: 823 QDVKN--SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYA 879
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
L + Y +L +I Q + +L + + + V + Y++ +
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLH----SLKEIISSASVVGLKPYVENIWAL 935
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
+L E R+ L T LP L + + R S V +
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS----GSSYARSSVVTAVKF 991
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
+ H + I +L + D L+VR
Sbjct: 992 TISD-----------------------HPQPIDPLL-----KNCIGDFLKTLEDPDLNVR 1023
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS------------------ERRQ 1903
+ AL + + N P +++++ ++ L + + R+
Sbjct: 1024 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRK 1083
Query: 1904 VAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQG--VCIGLSEVMASAGKSQLL 1960
A + L+ +R+ + + + GLKD + + + LS + SA +L
Sbjct: 1084 AAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143
Query: 1961 SFMDELIPTIRTALCDSIL--EVRESAGLAFSTLFKSAGMQAIDEI 2004
++ L T T + + + E + L S + A + I E
Sbjct: 1144 RLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 4e-22
Identities = 72/537 (13%), Positives = 162/537 (30%), Gaps = 80/537 (14%)
Query: 2075 ILPALLSAMGDDDMDVQSLA----KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR 2130
+ LL M D D + +A + ++ +D++ +V +LK + D ++
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP----- 2185
+ +G K + ++ TL + + L V+ +P
Sbjct: 67 LAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 2186 ----KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP----LLPIFLQG 2237
V + AI+ D + + + L +L L
Sbjct: 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183
Query: 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS 2297
L S +R++ + LG L+ + + L+ + + ++
Sbjct: 184 LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE----HLLSELSKNDSMSTTRTYIQCIA 239
Query: 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357
I R+ G + +L + ++ ++
Sbjct: 240 AISRQAGHRIGEYLEK------------------------------------IIPLVVKF 263
Query: 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 2417
V D +RE + A + ++ K V V + LK L Y + + +
Sbjct: 264 CNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323
Query: 2418 MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477
+ +D + + SW R + + + + ++ L
Sbjct: 324 DADGGDD--DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE--MLPEFYKTVSPAL 379
Query: 2478 KSSLKDEKFPLREASTKALGRLL--------------LHQIQSGPAN--TTVVVDILASV 2521
S K+ + ++ A LL + P + V +I+ ++
Sbjct: 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439
Query: 2522 VSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAE 2578
+ + S + R+ + L + P A+ H+ + P + L D S+ L +
Sbjct: 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKID 496
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 74.0 bits (180), Expect = 6e-13
Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 4/233 (1%)
Query: 2350 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRV 2409
+ +LL + SD R L L+ + + +V ++ L+ + V+
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 2410 SAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469
A LG + +++ Q+ ++ L S R S + T + P A S S L
Sbjct: 67 LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 126
Query: 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GPANTTVVVDILASVVSALHD 2527
++ ++ L + S + ++ + S G IL ++ L
Sbjct: 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 186
Query: 2528 DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
VR+R + AL + + + + V L L+E K+ S +C
Sbjct: 187 PRLAVRKRTIIALGHLVMSCGNIVFVD--LIEHLLSELSKNDSMSTTRTYIQC 237
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 53.2 bits (126), Expect = 2e-06
Identities = 125/1048 (11%), Positives = 301/1048 (28%), Gaps = 86/1048 (8%)
Query: 267 ILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALE 326
++ +G L+ V + + L + ++ R ++ + + E
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSA 125
Query: 327 AMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATE--GKYLNSLSLTICKFLLSCYK 384
K + G +A + AL +++ G L + +I LL
Sbjct: 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 185
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE--ALRRGHLRCLRVICTN 442
V+ + A+ +I+ DL+ S L + + + R +++C+ I
Sbjct: 186 SP-RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR- 243
Query: 443 TDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSL 502
Q +G ++ + K D + + ++ ++++
Sbjct: 244 -----QAGHRIGEYLEKIIPLVVKFCNVDDDE-----LREYCIQAFESFVRRCPKEVYPH 293
Query: 503 VSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP 562
VS + + L+ D + +
Sbjct: 294 VST-----IINICLKYLTYDPNYNYDDEDEDENAMDA---DGGDDDDQGSDDEYSDDDDM 345
Query: 563 SWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFL 622
SW +R+ A ++++ + F V +I ++
Sbjct: 346 SWKVRRAAAKCLDAVVSTRHEM-------LPEFYKTVSPALISRFKEREENVKADVFHAY 398
Query: 623 PSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKR---DAVWQRLHKCLRAV 679
S+ Q + + A + + S P+IV + + + C +
Sbjct: 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML 458
Query: 680 GFNVIEI---VSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEK 736
V + ++ + L ++ SL S++ + A++ L ++ + +
Sbjct: 459 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ 518
Query: 737 HLKDLPDCYVHDSLSENDIQVFYTPEGML----------SSEQGVYIAEIVAAKNTKQSK 786
L V D + + + ++ S + YI ++ +
Sbjct: 519 ALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
++ + +G ++ ++ + + + + + T K
Sbjct: 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGS 638
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
+ +R + L+ L S L L+K L + ++ V
Sbjct: 639 PLKIDLRPVLGEGVPILASFLRKNQRALKLG---TLSALDILIKNYSDSLTAAMIDAVLD 695
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVH-VDSDLIPSVGEAAKNKESLCLFERI 965
E L L + M + A+ T L + + + ++ + ++
Sbjct: 696 E-LPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
+ + + + ++ + S H + K + L
Sbjct: 755 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 814
Query: 1026 ISVLYHVLGVVPSYQA----------AIGSALNELCLGLQPNEVASALHGVYTKDVHVRM 1075
+V+ + V + ++ ++G + + L Q + L + V+
Sbjct: 815 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKS 874
Query: 1076 ACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS-- 1133
A A + ++S +LPE + + + + + ++I Y
Sbjct: 875 A---ASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 931
Query: 1134 ---GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
L K + R AE L P+++ L L + A
Sbjct: 932 IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY---------LISGSSYAR 982
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+ + + I FL + L D + +VR L
Sbjct: 983 SSVVTAVKFTISDHPQPIDPLLKNCIGDFL--KTLEDPDLNVRRVALVTFNSAAHNKPSL 1040
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LL + + N+ +E L+RE
Sbjct: 1041 IRDLLDTVLPHLYNETKVRKE---LIRE 1065
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 283 bits (725), Expect = 2e-82
Identities = 120/672 (17%), Positives = 228/672 (33%), Gaps = 96/672 (14%)
Query: 1329 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ D++ ++ L+D+L +++ R + L+ + G+ + + L + +
Sbjct: 2 AADGDDSLYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSE-LLPFLTDTIY 59
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448
D + +G YV +LP L + + VR+ A + RA+
Sbjct: 60 DEDEV--LLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAIS 115
Query: 1449 SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508
+ S ++ L+K L W T ++S G + C P+ S ++ +
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA--CGLFSVCYPRVSSAVKAELRQYFRNLC 173
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568
+D P V+ A + L + V++ + S
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKS------------------------------- 202
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628
++P+ + + A + N+ L+ + L++P +++
Sbjct: 203 -------EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA 251
Query: 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688
D VR + A L + +G E + L D R+ A+ + E
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311
Query: 1689 LG-----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743
L V ILP I S V+ ++ L LG N ++ +LP L
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL 369
Query: 1744 DGLADENESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
L DE VR + + E L LLPA+ + + WR+R + +E + L
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVR 1861
LG + +E L +L M D ++R
Sbjct: 430 -------------------------------AGQLGVEFFDEKLNSLCMAWLVDHVYAIR 458
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-ERV 1920
+AA K +V K + ++ +++ + R + L G +
Sbjct: 459 EAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
++P + R DP A+ R V L ++ S L E+ P + D ++
Sbjct: 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKLTQDQDVD 573
Query: 1981 VRESAGLAFSTL 1992
V+ A A + L
Sbjct: 574 VKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-41
Identities = 96/665 (14%), Positives = 204/665 (30%), Gaps = 95/665 (14%)
Query: 1888 NTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
LI L + + R + + L + LG ER ++P L+ + D +
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-ALAEQ 71
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L G + + L+P + + VR+ A + + ++
Sbjct: 72 LGTFTTLVGGPEYV---HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066
L+ L + RT A G +
Sbjct: 129 PLVKRLAGGD-----------WFTSRT---------------------SACGLFSVCYPR 156
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES-LVSELLKGVGDNQ 2125
+ + + DD V+ A V++ + V+S ++ D Q
Sbjct: 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
S+R + + L D ++ TL D + + + +V
Sbjct: 217 DSVRLLAVEACVNIAQ--LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG 274
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
E+ + L+P F + AE+
Sbjct: 275 PEITKTD-------------------------------------LVPAFQNLMKDCEAEV 297
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305
R A+ + E E S + ++ P I+ + VKSA+ S + + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS---ALSTRVDPLVGDLLSSLQVSD 2362
+ L F+ L+D VR + L ++ + L+ ++ + +
Sbjct: 358 --DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG-IMSQC 2421
+R AI+ + + G ++ S+ + +R +A S L ++ +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 2422 MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2542 SVAKA 2546
++ A
Sbjct: 584 VLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-37
Identities = 106/656 (16%), Positives = 218/656 (33%), Gaps = 93/656 (14%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716
++ L+D L++++ + R + + LS + ALG L + + + V
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776
+G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126
Query: 1777 LPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
+ + +W R S+ L
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFS-------------------------------VCYP 155
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI--VANTPKTLKEIMPVLMNTLISS 1893
+ + E+ + SD + VR+AA V EI+P+ +
Sbjct: 156 RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFS----NL 211
Query: 1894 LASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
+ R +A A + + L E + ++P L + +D S R V +E+
Sbjct: 212 ASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK 271
Query: 1953 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAIDEIVPT 2007
+ G +L+P + + D EVR +A ++ + +I+P
Sbjct: 272 AVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328
Query: 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
+ + D V++ A + L+ + G
Sbjct: 329 IKELVSDANQH------------VKSAL------------------ASVIMGLSPILGK- 357
Query: 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGVGDNQA 2126
+ + +LP L+ + D+ +V+ + V VI + +SL+ +++ D +
Sbjct: 358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW 416
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV-LLSDSDSTTVAAAWEALSRVVASVP 2185
+R + + + V+ +++L + L D AA L ++V
Sbjct: 417 RVRLAIIEYMPLL---AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
KE + I A+S + R +L + +LP L+ A
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299
+R A L ++ + +L+ V PI L ++ D+ VK L+++
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPI---LEKLTQDQ-DVDVKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 4e-37
Identities = 90/624 (14%), Positives = 202/624 (32%), Gaps = 64/624 (10%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGL 2025
I + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED--------- 62
Query: 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085
V A LG + G ++ +LP L S
Sbjct: 63 ----EVLLAL------------------AEQLGTFTTLVGG--PEYVHCLLPPLESLATV 98
Query: 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSK 2144
++ V+ A E+ ++ +E+ L+K G + + R S+ L Y
Sbjct: 99 EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158
Query: 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204
+ E + L SD AA L + + S I + +++
Sbjct: 159 SAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 2205 DKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
R + + ++P Q S +R A EL +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IALKPFLPQLQTTFIK 2320
+ K ++P ++ D +V++A + + Q+ +
Sbjct: 276 EITKTDLVPA---FQNLMKDCEA-EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331
Query: 2321 CLQDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377
+ D+ + V+S+ A + LS + ++ L+ L+ L+ +R I++ L V
Sbjct: 332 LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391
Query: 2378 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL-N 2436
+ G + + + +L VR++ + +++ + + L L
Sbjct: 392 EVIG---IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA 448
Query: 2437 LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKAL 2496
+A R + + + + +I+ ++ + D + R + +
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFCI 504
Query: 2497 GRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 2556
L Q +L +V+ D + VR +L+ + ++ +
Sbjct: 505 NVLSEVCGQD-----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV 559
Query: 2557 LFGPALAECLKDGSTPVRLAAERC 2580
P L + +D V+ A+
Sbjct: 560 K--PILEKLTQDQDVDVKYFAQEA 581
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 73/434 (16%), Positives = 143/434 (32%), Gaps = 22/434 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVIRDAISTSRDKE 2207
D++ I+ LI L + D + + LS + ++ E + + + D I +
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 2208 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267
+ P+ + LLP +R++A L + S L+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 2268 FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTR 2327
+P+ L + +++ S+ + A+K +L+ F D T
Sbjct: 126 HFVPLVKRLA----GGDWFTSRTSACGLFSVCYPRVSSAVK---AELRQYFRNLCSDDTP 178
Query: 2328 TVRSSAALALGKLSALSTR---VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384
VR +AA LG+ + + ++ + +R + A + + +
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-DLLQELLNLASSPSW 2443
A V L+ VR A + + + DL+ NL
Sbjct: 239 LEA---LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
R + F + + + + IL +K + D ++ A + L
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563
+ + +L ++ L D+ EVR +S L V + + L PA+
Sbjct: 356 GKD-----NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL--PAIV 408
Query: 2564 ECLKDGSTPVRLAA 2577
E +D VRLA
Sbjct: 409 ELAEDAKWRVRLAI 422
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 7e-11
Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 17/235 (7%)
Query: 2354 LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAAS 2413
L+ L+ D +R + L + G + + L D + +D+D V ++ A
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALG---VERTRSELLPFLTDTI-YDEDEVLLALAE 70
Query: 2414 ILGIMSQCMEDGQLAD-LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472
LG + + + LL L +LA+ R +V + + + F+
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-LEAHFVP 129
Query: 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEV 2532
++ RL + F R ++ + V ++ + DD+ V
Sbjct: 130 LVKRL---AGGDWFTSRTSACGLFSVCYPRVSSA------VKAELRQYFRNLCSDDTPMV 180
Query: 2533 RRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
RR A S L AK + + P + D VRL A V+ QL
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEII--PMFSNLASDEQDSVRLLAVEACVNIAQL 233
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 4e-07
Identities = 78/548 (14%), Positives = 159/548 (29%), Gaps = 67/548 (12%)
Query: 859 VQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSR---- 914
V L+ L + + P + H LP L ++ +V D A E+L +S
Sbjct: 64 VLLALAEQLGTFTTL-VGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP 120
Query: 915 ----------CTAMPLCNWALDIATALRLIVTEEVHVDS----DLIPSVGEAAKNKESLC 960
+ +W +A L V S +L + +
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDPLL 1018
+ V S + P+ + + + L + + + +
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 1019 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTK-----DVHV 1073
+ M ++ + + EL + P + L + + V
Sbjct: 239 LEALV-MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1074 RMACLNAVKCIPAVSTRSLPENI---EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
R A + VK + EN+ ++ + V D + V A + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1131 DYS------GLFKALSHSNYNVRLAAAEALAT-----ALDEYPDSIQGSLSTLFSLYIRD 1179
D + L VRL L + + S+ ++ L
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE----- 412
Query: 1180 IGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA 1239
DA W R I + A L + + L L D +R +
Sbjct: 413 --------DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464
Query: 1240 GIMIIDKHGRDNV-SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 1298
+++K G++ + + P + L R + L++ +D
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSG------DPNYLHRMTTLFCINVLSEVCGQDITTK 518
Query: 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRG 1357
H ++ +L + P V+ V+ L + + + + V +L++L + +
Sbjct: 519 H-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577
Query: 1358 AAFGLAGV 1365
A L +
Sbjct: 578 AQEALTVL 585
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 4e-40
Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 2/214 (0%)
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPK 1514
+ + LE+K W ++ S+++L + P+ + +V L +V+T D++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574
+ + L + + ++ + L + K ++ L+ + SL
Sbjct: 73 LVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
+ L ++ K + A + + + LL + K L +P P
Sbjct: 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPT 191
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
VR +A A+G+LI+ MG++ L++ + +
Sbjct: 192 VRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 3e-20
Identities = 35/215 (16%), Positives = 83/215 (38%), Gaps = 9/215 (4%)
Query: 1334 EAPTLVSRL---LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG-IAATLREGLAD 1389
+ ++S++ ++ K+ R+ + L ++ +YG + + L++ +
Sbjct: 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
++ A L + L + F Y +P LL F ++ V A A A+ +
Sbjct: 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLS-QCLPKIVPKLTEV 1507
S + S+++ L +K K + + P L+ + L + L +
Sbjct: 128 STSLE---AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542
L + P V+ + AL + ++ + + L+ +
Sbjct: 185 LNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---LGTVYFEHILPDIIRNCSH- 1707
+ + D L+ R + + L ++L L + ++ + + +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWT-LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767
+ L + L +F NY +P++L+ ++ +V A A +
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREA---IDAI 125
Query: 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807
YA+TSL ++ + + N N ++ + + L +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 39/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPI 1632
L+ + + L E+ +K++ +++ + + PK G L+ +KKV+ D
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSN 70
Query: 1633 PEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
+ ++A + + L +G+ + V LL+ K NV L E + A+
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNV-----VTALREAIDAI 125
Query: 1690 -GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ--FQNYLQQVLPAILDGL 1746
+ E I+ + S++ SV+ + L+ + +++ L
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ + +VRD++ A L++ ++ LL V+
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 29/240 (12%), Positives = 81/240 (33%), Gaps = 34/240 (14%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVR---KLGERVLPSIIPILSRGLKDPSA 1937
+I+ + L R+ + L +L+ KL +++ L + + S
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ ++A + ++ +P++ + V + A ++ S
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
++ +++ +L + SV++ + L+ AL
Sbjct: 131 ---LEAQQESIVESLSNKNP------------SVKSETA------LFIARALTRTQPTAL 169
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
L + +L+ + + D V+ + EA T+ ++ ++ V L++++
Sbjct: 170 NK----------KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 10/195 (5%)
Query: 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 2364
L ++ F L++ T+R + L KL + LV L + S+
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+ L + K K S+ L + +V + + +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASA-CVPSLLEKFKEKKPNVVTALREAIDAI---YAS 128
Query: 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 2484
L + ++ S+ + + + + L A L L + L +L +
Sbjct: 129 TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP 188
Query: 2485 KFPLREASTKALGRL 2499
+R++S +ALG L
Sbjct: 189 DPTVRDSSAEALGTL 203
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 29/220 (13%), Positives = 74/220 (33%), Gaps = 21/220 (9%)
Query: 2407 VRVSAASILGIMSQC---MEDGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPS 2462
+R + +L + +E+G+ L+ L + + + A +
Sbjct: 31 LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
S + + L K++K + A +A+ + +T + S+V
Sbjct: 91 --RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI---------YASTSLEAQQESIV 139
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERC 2580
+L + + V+ + + + L +L + L + VR ++
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEA 199
Query: 2581 AVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSE 2620
+L G + + + +D +++K E + +E
Sbjct: 200 LGTLIKLM-GDKAV---TPLLADVDPLKMAKIKECQEKAE 235
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 13/207 (6%)
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFND-NWR 1790
L ++ D L ++ ++R +L L+ L+ A++ I D N
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1791 IRQSSVELLGDL-------LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + L L A +LLE + + A AI +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--LKEIMPVLMNTLISSLASSSSER 1901
++ S+ + SV+ + T T K+++ +L +L+ +L
Sbjct: 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPIL 1928
R + ALG L++ +G++ + ++ +
Sbjct: 193 RDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 20/235 (8%)
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY---IKVIRDAISTSR 2204
VD M L + T + E L +++ PK Y + ++ I+
Sbjct: 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS 69
Query: 2205 DKERRKKKGGPILIPGFCLPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVT 2260
+ G + + L K +P L+ + + + T
Sbjct: 70 NVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST 129
Query: 2261 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA--LKPFLPQLQTTF 2318
S ++ +E ++ + ++ VKS ++ + + K L L T+
Sbjct: 130 SLEAQQE-------SIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTA 2372
+K L + TVR S+A ALG L L D V LL+ + + A I+E A
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMG--DKAVTPLLADVDPLKMAKIKECQEKA 234
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 4e-07
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 40/206 (19%)
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSER 1901
+++ Y + ++R+ +L V + ++ + PK L++ L + S+
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 1902 RQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+AG+ L L + L +R + +P L K+ + + + + AS
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 1959 LL------------------------------------SFMDELIPTIRTALCDSILEVR 1982
+ L ++ L + VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTL 2008
+S+ A TL K G +A+ ++ +
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 12/202 (5%)
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ + D L+ +R+ L L+ +L K + V ++ K + +
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 2407 VRVSAASILGIMSQCMEDG---QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463
+ A L ++++ + + + LL
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 2464 ISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVS 2523
+ + + SL ++ ++ + + R L + Q N ++ + S+V
Sbjct: 133 --------AQQESIVESLSNKNPSVKSETALFIARAL-TRTQPTALNKKLLKLLTTSLVK 183
Query: 2524 ALHDDSSEVRRRALSALKSVAK 2545
L++ VR + AL ++ K
Sbjct: 184 TLNEPDPTVRDSSAEALGTLIK 205
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 5e-36
Identities = 136/970 (14%), Positives = 301/970 (31%), Gaps = 173/970 (17%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 65
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
++L K + + + D I
Sbjct: 66 SLSGLIL--------------------------------KNN--VKAHFQNFPNGVTDFI 91
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE 1674
E + D P +R+ I ++ +N+PDL+ L L S++ N
Sbjct: 92 ------KSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNT- 144
Query: 1675 RSGAAQGLSEVLAALGTVYFEH--------ILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726
GA L ++ + ++P ++ H +R + S
Sbjct: 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204
Query: 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---DG 1783
++ + + DE VR A +L+E LP + VE
Sbjct: 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264
Query: 1784 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + + E L A + + +G ++ +
Sbjct: 265 TQDQDENVALEACEFWLTL----AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903
+V + ++R+ + + E++P ++ L L ++
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKE 377
Query: 1904 VAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
LG + + + LP +IP L + L D A R C LS
Sbjct: 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHALEDDQT 2017
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A Q
Sbjct: 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 497
Query: 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN--FHLGTI 2075
+ L + A+G LA+ G LN ++ +
Sbjct: 498 KN-----LLILYD-------------------------AIGTLADSVGHHLNKPEYIQML 527
Query: 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135
+P L+ + + L E ++ V S + V ++
Sbjct: 528 MPPLIQKWNMLKDEDKDLFP-LLECLSSVATALQ--SGFLPYCEPVYQRCVNL------- 577
Query: 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195
+ + + D + A + LS + + ++
Sbjct: 578 ---------VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV--- 625
Query: 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGE 2255
A +L + Q + E+R+ + LG+
Sbjct: 626 ------------------------------ARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 2256 LIEVTSEQSLKEFVIPITGPLIRIIG---DRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312
L + + + V P + I+G + V + + I + GI ++P++P
Sbjct: 656 LTK-----ACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP 710
Query: 2313 QLQTTFIKCLQDST--RTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 2364
+ ++ + +T+ + A+ +G+L ++ + + +SL+ + D
Sbjct: 711 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE 770
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+++ + ++ V +V + DD +R IL + D
Sbjct: 771 EKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDD--LRDMFCKILHGFKNQVGD 828
Query: 2425 GQLADLLQEL 2434
+
Sbjct: 829 ENWRRFSDQF 838
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 126 bits (316), Expect = 6e-29
Identities = 92/650 (14%), Positives = 201/650 (30%), Gaps = 73/650 (11%)
Query: 2003 EIVPTLLHALEDDQTSDT-----ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN---- 2053
+ L+ L ++ D + LK + + + L+
Sbjct: 45 DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSP 104
Query: 2054 ---AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA----AETVTLVID 2106
A + +A G + +LP L S + +D + A A E ++D
Sbjct: 105 LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD 164
Query: 2107 EEGVE----SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
+ ++ ++ + L+ + IR + + F + L+ + I L L
Sbjct: 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA 224
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
D + AL ++ + P ++ + ++D++
Sbjct: 225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 284
Query: 2223 ----LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------------- 2262
L LP + L++G L G++ +
Sbjct: 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAA 344
Query: 2263 -----QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
++ ++P PL++ + W VK + + L I + P+LP+L
Sbjct: 345 LDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404
Query: 2318 FIKCLQDSTRTVRSSAALALGKLS------ALSTRVDPLVGDLLSSLQVSDAGIREAILT 2371
I+CL D VRS L + + T + PL+ +LL + S+ ++EA +
Sbjct: 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464
Query: 2372 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431
A + + A + + + +++ + ++ + +I + + +
Sbjct: 465 AFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 2432 QELLNL------ASSPSWAARHGSVLVFATFLRHNPSAIS--MSPLFLSILDRLKSSLKD 2483
Q L+ + ++ S P++ ++ ++ +L
Sbjct: 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ 584
Query: 2484 EKFP-------------LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530
+ L L + +IL + + D
Sbjct: 585 AMLNNAQPDQYEAPDKDFMIVALDLLSG-LAEGLGGNIEQLVARSNILTLMYQCMQDKMP 643
Query: 2531 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
EVR+ + + L + KA + +A F P L L V A
Sbjct: 644 EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWA 693
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 9e-29
Identities = 109/749 (14%), Positives = 225/749 (30%), Gaps = 98/749 (13%)
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK----LGERVLPSIIPILSRGLKDPSASR 1939
+ +++ L S R ++G L V+ V I + D S
Sbjct: 47 NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI 106
Query: 1940 RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-- 1997
R V I ++ + + +L+P + + L E A A + + +
Sbjct: 107 RATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 1998 ------MQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSVRTTAVLPHI---LPKLVH 2046
+ ++ ++P L + + A+ + Q + RT A++ HI + L
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA 222
Query: 2047 LPLS--------AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098
L AL L EV L H+ I+ +L D D +V A EA
Sbjct: 223 LAGDEEPEVRKNVCR--ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV---ALEAC 277
Query: 2099 ETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 2158
E + ++ + ++ L LI K +D
Sbjct: 278 EFWLTLAEQPICKDVLVRHLPK--------------LIPVLVNGMKYSDIDIILLKGDVE 323
Query: 2159 IVLLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
D SD + AL + E+ P + ++++ + E K+ G
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGI 380
Query: 2216 ILI------PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269
+++ + L L+P +Q L A +R L Q ++
Sbjct: 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 440
Query: 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
P+ L++ I D +V+ A S + + + L P+L + T +
Sbjct: 441 KPLMTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKN 499
Query: 2330 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVS--DAGIREAILTALKGVLKHA 2380
A+G L+ + L+ L+ + + +L L V
Sbjct: 500 LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL 559
Query: 2381 GKSVSSAVK----------------IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+ + + D D + A +L +++ +
Sbjct: 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG 619
Query: 2425 G-----QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+++L + R S + + + P + L +
Sbjct: 620 NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV--KPCIADFMPILGT 677
Query: 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH--DDSSEVRRRAL 2537
+L E + +T A+G + + G + +L +V ++ + +
Sbjct: 678 NLNPEFISVCNNATWAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA 734
Query: 2538 SALKSVAKANPSAIMVHVALFGPALAECL 2566
+ + P + + F L
Sbjct: 735 ITIGRLGYVCPQEVAPMLQQFIRPWCTSL 763
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 3e-22
Identities = 108/749 (14%), Positives = 233/749 (31%), Gaps = 76/749 (10%)
Query: 1105 AVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP 1162
P+ ++ + ++ DF + L + R + L + +
Sbjct: 21 ESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80
Query: 1163 DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 1222
+ ++ +I+ L D+ L R + + + + A ++ P ++ L S
Sbjct: 81 QNFPNGVTD----FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCS 135
Query: 1223 RALADTNADVRGRMLNAGIMIID---KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ G + D D + I + +R
Sbjct: 136 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK--IRSH 193
Query: 1280 VVIFTGALAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
V + + + ++ L + V++ V L L++ D
Sbjct: 194 AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ +++ +++ + + A +L + I + + G
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEF------WLTLAEQPICKDVLVRHLPKLIPVLVNG 307
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
+ + G + + +R+ + A + + + +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDD--------TISDWNLRKCSAAALDVLANVYRDELLPH 359
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 1519 GQTALQQ----VGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVD 1570
L + V S + + L+ LL + D N + + L + T
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE--ACTEL 477
Query: 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630
P LA ++ + + + +G + V + YI +L+P + +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 1631 ---------PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE------- 1674
P+ E S A A+ S E + V+ + L N
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597
Query: 1675 ------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
SG A+GL + L V +IL + + + VR L
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-------YATTSLPL 1775
L ++ + + +P + L E SV + A A + Y L
Sbjct: 656 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 715
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804
L+ + + +++ +G L +
Sbjct: 716 LVEIINRPNTPKT--LLENTAITIGRLGY 742
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 96.4 bits (239), Expect = 7e-20
Identities = 39/272 (14%), Positives = 99/272 (36%), Gaps = 10/272 (3%)
Query: 2312 PQLQTTFIKCLQDST---RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368
Q ++ L++S T++ + L +L+ + + +L+ L+ D R
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSL 67
Query: 2369 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA 2428
LK +K ++ + V + S + + +R + ++ ++ E
Sbjct: 68 SGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP 127
Query: 2429 DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEK 2485
DLL +L +L S + G+ + + L ++ + K
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187
Query: 2486 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545
+R + + + ++ + Q+ + + + ++ + D+ EVR+ AL + +
Sbjct: 188 PKIRSHAVACVNQFIISRTQALMLH---IDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244
Query: 2546 ANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
++ H+ + + +D V L A
Sbjct: 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 9e-32
Identities = 121/850 (14%), Positives = 253/850 (29%), Gaps = 169/850 (19%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS- 1683
LV P + + AA+ I ++ + +P+L+ ++D ++ + + L
Sbjct: 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161
Query: 1684 --EVLAALGTVYFEH---ILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQF--QNY 1734
E IL I++ + +VR L + +
Sbjct: 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE 221
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE----DGIFNDNWR 1790
++ + + E+ V+ AA G ++ Y T P + A+ + + N +
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
+ +VE ST I L +
Sbjct: 282 VASMTVEFW-------------------------STICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE---RRQVAGR 1907
S +K+++P L+N L + AG
Sbjct: 317 FALSS-----------------------IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967
L + G +L ++ + + + + R+ + +M K Q ++ + +
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413
Query: 1968 PTIRTALCDSILEVRESAGLAFSTLFKS-----AGMQAIDEIVPTLLHALEDDQ------ 2016
P+I + D L+V+E+ + S Q + +V L L+D
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473
Query: 2017 --TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH--------ALGALAEVAGP 2066
T ++ L + P ++ L+ N AL + E A
Sbjct: 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533
Query: 2067 GLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125
+ +I ++ +G +D L E D + ++ L S +L +
Sbjct: 534 TVAETSASISTFVMDKLGQTMSVDENQLTLE---------DAQSLQELQSNILTVL---A 581
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA-AAWEALSRVVASV 2184
A IR+S + + A ++ LL DS + + A+S + AS+
Sbjct: 582 AVIRKSPSSVEPV------------ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629
Query: 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244
K + L+ P L+ L +
Sbjct: 630 GKGFEK-----------------------------------YLETFSPYLLKALNQVDSP 654
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKG 2303
+ A+G I + E+ + + + L ++I + ++K A+LS I
Sbjct: 655 VS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363
G P+L + + D + +
Sbjct: 714 GADFIPYLNDIMALCVAAQNTKP------------------ENGTLEALDYQIKVLEAVL 755
Query: 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423
I+ L + V + + + V +D + +D +A ++G ++
Sbjct: 756 DAYVGIVAGLHDKPEALFPYVGTIFQF-IAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP 814
Query: 2424 DGQLADLLQE 2433
DG + +
Sbjct: 815 DGSIKQFYGQ 824
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 3e-21
Identities = 110/710 (15%), Positives = 234/710 (32%), Gaps = 92/710 (12%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+ NV+ A+ AL + Q +S+ ++ I + + + R
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAV-RLAALN 203
Query: 1200 ALHSAADVLRTKD-----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
AL + ++ +M + A + +V+ I+ K+ +
Sbjct: 204 ALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKIMSKY----YTF 258
Query: 1255 LFPIFENYLN--KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312
+ P E L A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF- 317
Query: 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 1370
+ S++D P L++ L Q + + A L + G
Sbjct: 318 --------------ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAF 1429
L+ + + + + N + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEP--VLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSS----VQ 1480
+DQ + V+E + ++ Q + V+ + L GL+D + + +
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIIN 479
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PE 1534
L+ +A P + P +V L + + A + ++++
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS-AFSALTTMVEYATDTVAET 538
Query: 1535 IASLVPTLLMGLTDPNDHTKYSLDIL-------LQTTFVNTVDA----------PSLALL 1577
AS+ ++ L + L + LQ+ + + A P +L
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 1578 VPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
+ + R L ++ SA + + + + + + Y+ P + K L V
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1637 SVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTV 1692
A I + + E+ +++ L + + N+ + ++ + +G
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA- 715
Query: 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES 1752
F L DI+ C + P + ++ +Y +VL A+LD
Sbjct: 716 DFIPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYV----G 760
Query: 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
+ L Y T + ED +++V L+GD+
Sbjct: 761 IVAGLHDKPEALFP-YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 1e-18
Identities = 107/890 (12%), Positives = 267/890 (30%), Gaps = 112/890 (12%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQS 1477
+ LL + +R +E + +LS + L E+ +
Sbjct: 5 EFAQLLENSILSPDQNIRLTSE----TQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 1478 SVQLL-----GAMAYCAPQQLSQCLPKIVP--------KLTEVLTDTHPKVQSAGQTALQ 1524
+ L + Q + + ++ P L P++ +A +
Sbjct: 61 AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120
Query: 1525 QVGSV-IKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFVNTVDAPSL-----AL 1576
+ + + + L+ ++ SL L + +L +
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180
Query: 1577 LVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635
L+ IV E S + A + + + + L+ V + EV
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695
++ A + ++ P + L + + A+ + F
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVE----------FW 290
Query: 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755
+ + + +++ A L + + S+ N L +L + D++ +V
Sbjct: 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN-LLNLLTRQNEDPEDDDWNVSM 349
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
+A + ++ L +L VE I DNWR R+++V G ++
Sbjct: 350 SAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM------------ 397
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+G + + L +L + +D SL V++ I +
Sbjct: 398 ------DGPDKVQRTYYVHQAL-----PSILNLM----NDQSLQVKETTAWCIGRIADSV 442
Query: 1876 PKTL--KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIP 1926
+++ ++ +P ++ + L + + LV +L E P+++
Sbjct: 443 AESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501
Query: 1927 ILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
L + M + + + L ++
Sbjct: 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + + + + + + + +D + ++L + +A +
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED----- 616
Query: 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV 2104
F +A+ ALA G G +L T P LL A+ D V A ++
Sbjct: 617 -----DVF--YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 2105 IDEEG---VESLVSELLKGVGDNQA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
++E+ +++++ L + + + A ++ + + G N + ++++ +
Sbjct: 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
+ Y + +A+ + P +
Sbjct: 730 AAQNTKPENGT----------------LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269
+ + Q + + + A +G++ + + S+K+F
Sbjct: 774 PY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 5e-15
Identities = 61/447 (13%), Positives = 141/447 (31%), Gaps = 60/447 (13%)
Query: 2105 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164
+ E + + L + + I ++A LI P ++ ++
Sbjct: 88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI--ELPHGAWPELMKIMVDNTGA 145
Query: 2165 SDSTTVA-AAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223
V A+ AL + S + Q L
Sbjct: 146 EQPENVKRASLLALGYMCESADPQSQA--------------------------------L 173
Query: 2224 PKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
+ +L +QG S S +R A L + + +E ++
Sbjct: 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT 233
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ----LQTTFIKCLQDSTRTVRSSAALAL 2337
+V++A L I+ K +KP++ Q L +K D + + +
Sbjct: 234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS------MTV 287
Query: 2338 GKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 2397
S + + + A ++ L + L V + + +
Sbjct: 288 EFWSTIC--------EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339
Query: 2398 DLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFL 2457
DD +V +SA + L + +Q + L +L+ + ++ +W R +V+ F + +
Sbjct: 340 PED--DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397
Query: 2458 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
P + + L + + + D+ ++E + +GR+ + + +
Sbjct: 398 -DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS-VAESIDPQQHLPGV 455
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVA 2544
+ + + L D +V + ++
Sbjct: 456 VQACLIGL-QDHPKVATNCSWTIINLV 481
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 2e-12
Identities = 91/733 (12%), Positives = 206/733 (28%), Gaps = 94/733 (12%)
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPL 1020
+ IV G + S + + + + + I + +R G + ++Q++ +
Sbjct: 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239
Query: 1021 PRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNA 1080
+ L ++ ++ + + + L + + + + V +
Sbjct: 240 VQAAAFGCLCKIMSKYYTF---MKPYMEQALYALT-------IATMKSPNDKVASMTVEF 289
Query: 1081 VKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALS 1140
I E + S + + S+ + ++ +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED------- 342
Query: 1141 HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
++NV ++A L + I + I W R+ +A
Sbjct: 343 -DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---------DNWRNREAAVMA 392
Query: 1201 LHSAAD----VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DNVSL 1254
S D V RT + + +++ + D + V+ I D D
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-----PKVHAVVDKLLDVL 1309
L + + D K V L + LA+ A+VD L+
Sbjct: 452 LPGVVQA-CLIGLQDHPK---VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507
Query: 1310 NTPS----------EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK-------- 1351
N A+ V + ++ + ++ +L + +
Sbjct: 508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567
Query: 1352 -YGERRGAAFGLAGVVKGFGISSLKKYG--IAATLREGLADRNSAKRREGALLAFECLCE 1408
E + + V SS++ + L ++SA + A L
Sbjct: 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL---VLPSLLK 1465
LG+ FE Y+ P LL A + V A + + L + ++ L +
Sbjct: 628 SLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687
Query: 1466 GLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
+ + R K + + + G +A L I+
Sbjct: 688 MISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQ 747
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
+V + ++ GL D + + + Q + +
Sbjct: 748 IKV-----LEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ-------------FIAQVAED 789
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPI--PEVRSV 1638
T + A ++G++ ++ P I ++ +K+ + +
Sbjct: 790 PQLYSEDATSRAAVGLIGDIAAMF--PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDT 847
Query: 1639 AARAIGSLIRGMG 1651
A A R +
Sbjct: 848 ARWAREQQKRQLS 860
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 59/395 (14%), Positives = 128/395 (32%), Gaps = 59/395 (14%)
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
L L+S + AA + + ++ ++ I ++ G P VK A L
Sbjct: 101 LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKI---MVDNTGAEQPENVKRASLL 157
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQ-----DSTRTVRSSAALALGKLSALSTR--- 2346
L + + + I +Q ++++ VR +A AL
Sbjct: 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217
Query: 2347 ----VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
+ L+ + + Q D ++ A L ++ + ++ +Y++ +
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277
Query: 2403 DDDHVRVSAASIL--------------------GIMSQCMEDGQLADLLQELLNLASSPS 2442
+D V + S + D++ LLNL + +
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337
Query: 2443 -------WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
W + F ++ + I +L+ ++ ++ + + REA+ A
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHI-----LEPVLEFVEQNITADNWRNREAAVMA 392
Query: 2496 LGRLLLHQIQSGPAN---TTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552
G I GP T V L S+++ ++D S +V+ + +A + +I
Sbjct: 393 FG-----SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447
Query: 2553 V--HVALFGPALAECLKDGSTPVRLAAERCAVHAF 2585
H+ A L+D + +
Sbjct: 448 PQQHLPGVVQACLIGLQDHPKVATNCS--WTIINL 480
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 14/266 (5%)
Query: 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ + + IR + A L + +++ LI LL D T V A +
Sbjct: 2 SMEEEEFDIREALANGEHL---EKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMV 58
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239
+ + +P +K + + S ++ P+ ++ ++P+
Sbjct: 59 IAKTREDLYEPM-LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYR 117
Query: 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299
G + + + L E+ + + I + ++ + + K L+ + +
Sbjct: 118 IGDEKTKINVSYALEEIAKAN-----PMLMASIVRDFMSMLSSK-NREDKLTALNFIEAM 171
Query: 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359
+ PFLP++ I L D VR+SA AL L+ L+ ++ +V L L
Sbjct: 172 GENSFKYVNPFLPRI----INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELN 227
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVS 2385
+ + + + + + +L G S S
Sbjct: 228 DTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 4e-16
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 46/271 (16%)
Query: 1828 AHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886
A+G + ++L K +E VL L + D +V + A+ + I + ++ L
Sbjct: 15 ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKL 74
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
+ L S + Q +A G++ ++ E V +IP+L + + V
Sbjct: 75 FSLLKK---SEAIPLTQEIAKAFGQMAKEKPELVKS-MIPVLFANYRIGDEKTKINVSYA 130
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L E+ + M ++ + L E + +A + ++ + ++ +P
Sbjct: 131 LEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNPFLP 184
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066
+++ L D VR +A AL LA
Sbjct: 185 RIINLLHDGDE------------IVRASA------------------VEALVHLAT---- 210
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
LN L ++ L + D V KE
Sbjct: 211 -LNDKLRKVVIKRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 7e-16
Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 15/265 (5%)
Query: 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486
++ ++ +REA + A+ + VL L++ L+D W ++++ ++ +A
Sbjct: 1 MSMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60
Query: 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 1546
L K+ L + A Q+ K + S++P L
Sbjct: 61 KTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKSMIPVLFANY 116
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
++ TK ++ L+ + + +A +V L ++ E K A + M
Sbjct: 117 RIGDEKTKINVSYALEE--IAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173
Query: 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666
K + P+ LP + +L D VR+ A A+ L + +V L+ L
Sbjct: 174 -NSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHL--ATLNDKLRKVVIKRLEEL 226
Query: 1667 KSDNSNVERSGAAQGLSEVLAALGT 1691
D S++ +G+S +L G
Sbjct: 227 N-DTSSLVNKTVKEGISRLLLLEGH 250
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 8e-16
Identities = 38/261 (14%), Positives = 85/261 (32%), Gaps = 25/261 (9%)
Query: 2322 LQDSTRTVRSSAALA--LGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379
+++ +R + A L K+ ++ + ++ L+ L + + ++ + + K
Sbjct: 3 MEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT 62
Query: 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 2439
+K + L + + A G M++ + + ++ L
Sbjct: 63 REDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL-VKSMIPVLFANYR 117
Query: 2440 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
+ + NP ++ SI+ S L + + + + +
Sbjct: 118 IGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSKNREDKLTALNFIEAM 171
Query: 2500 LLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFG 2559
G + V L +++ LHD VR A+ AL +A N V +
Sbjct: 172 -------GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI---- 220
Query: 2560 PALAECLKDGSTPVRLAAERC 2580
E L D S+ V +
Sbjct: 221 -KRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-15
Identities = 38/239 (15%), Positives = 94/239 (39%), Gaps = 26/239 (10%)
Query: 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDA-GI 2365
+ L +L I+ L D TV +A + ++ +P++ L S L+ S+A +
Sbjct: 31 ESVLKKL----IELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPL 86
Query: 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG 2425
+ I A + K + V S + + L D+ +++ + L +++
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPV-----LFANYRIGDEKTKINVSYALEEIAKANPML 141
Query: 2426 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 2485
+A ++++ +++ SS + + ++ ++ ++ L R+ + L D
Sbjct: 142 -MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN------PFLPRIINLLHDGD 194
Query: 2486 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544
+R ++ +AL L + ++ + L+D SS V + + +
Sbjct: 195 EIVRASAVEALVHL--------ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 44/262 (16%), Positives = 96/262 (36%), Gaps = 24/262 (9%)
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
++RE A G L ++ E V+ LI ++ D W V +S + +I +
Sbjct: 9 DIREALANGE-HLEKILIMAKYDESVLK---KLIELLDDDL-WTVVKNAISIIMVIAKTR 63
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRT-VRSSAALALGKLSALSTR-VDPLVGDLLSSLQVS 2361
+P L +L L+ S + A A G+++ V ++ L ++ ++
Sbjct: 64 EDLYEPMLKKL----FSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIG 119
Query: 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421
D + + AL+ + K ++S V+ ++ + +++A + + M +
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIVRD-----FMSMLSSKNREDKLTALNFIEAMGEN 174
Query: 2422 MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
+ L ++NL R +V N ++ + L
Sbjct: 175 SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK-------VVIKRLEEL 226
Query: 2482 KDEKFPLREASTKALGRLLLHQ 2503
D + + + + RLLL +
Sbjct: 227 NDTSSLVNKTVKEGISRLLLLE 248
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)
Query: 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793
Y + VL +++ L D+ +V A+ V+ + P+L ++ + Q
Sbjct: 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR------DKRNEVLA 1847
+ G + K K+++ + E + L ++
Sbjct: 89 EIAKAFG-QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907
+ S + + AL+ + + N+ K + +P ++N L R A
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL----LHDGDEIVRASAVE 203
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1957
AL L L +++ +I L L D S+ + V G+S ++ G S
Sbjct: 204 ALVHLA-TLNDKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLLLEGHS 251
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 1e-10
Identities = 41/292 (14%), Positives = 102/292 (34%), Gaps = 53/292 (18%)
Query: 1745 GLADENESVRDAALGAGH----VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+ +E +R+A H +++ Y + L L+ ++D D W + ++++ ++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDD----DLWTVVKNAISIIM 57
Query: 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1860
+ + E +++ L +++ ++ +
Sbjct: 58 VI--------------------AKTREDLYEPMLKKL-----------FSLLKKSEAIPL 86
Query: 1861 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920
Q + + P+ +K ++PVL + + + AL E+ + +
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPVLFA----NYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
I+ L + + + + ++ K +++ +P I L D
Sbjct: 143 AS-IVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEI 196
Query: 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED--DQTSDTALDGLKQILS 2030
VR SA A L + + ++V L L D + T +G+ ++L
Sbjct: 197 VRASAVEALVHL--ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 5e-10
Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 16/240 (6%)
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILS 2030
++ + ++RE+ + + ++ L+ L+DD + A+ + I
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---PGLNFHLGTILPALLSAMGDDD 2087
R P +L KL L + +A+ G + +++P L + D
Sbjct: 62 TREDLYEP-MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120
Query: 2088 MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147
+ A E + + + S+V + + + + ++ I +NS Y+
Sbjct: 121 EKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYV 179
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207
P +I LL D D A+A EAL + K KV+ + D
Sbjct: 180 NPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTS 230
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 18/236 (7%)
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
++ + L + K A I+ + T P + L +KK +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKK---SEAIPLT 87
Query: 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696
A+A G + + E ++ L + + + + L E+ A +
Sbjct: 88 QEIAKAFGQMAKEKPEL-VKSMIPVLFANYRIGDEKT-KINVSYALEEIAKANPML-MAS 144
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
I+ D + S + + L ++G Y+ LP I++ L D +E VR +
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI----EAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 1757 ALGA-GHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810
A+ A H+ + + L + D + + ++ E + LL +S
Sbjct: 201 AVEALVHLATLNDKLRKVVIKRLEELND----TSSLVNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 23/239 (9%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
L + L + V A + D + L LFSL + + +
Sbjct: 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS-----EAIPL----T 87
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
Q IA A A +I + + + A +++ + N L
Sbjct: 88 QEIAKAFGQMAKEKPELVKSMIPVLFA--NYRIGDEKTKINVSYA----LEEIAKANPML 141
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ I ++++ +S + + + F A+ ++ K V+ + +++++L+ E
Sbjct: 142 MASIVRDFMSMLSSKNRE---DKLTALNFIEAMGENSFKY---VNPFLPRIINLLHDGDE 195
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373
V+ + L L D+ +V + L++L + + G++ ++ G SS
Sbjct: 196 IVRASAVEALVHLATL-NDKLRKVVIKRLEELNDTSSL-VNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 29/276 (10%)
Query: 1224 ALADTNADVRGRMLNA----GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ + D+R + N I+I+ K+ + L + + D+ V +
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLD--------DDLWT--VVKN 51
Query: 1280 VVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ +AK ++ KL +L + + + ++ + + + ++
Sbjct: 52 AISIIMVIAKTREDL---YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSM 108
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ L D+ + ++ L + K + I L+ +N +
Sbjct: 109 IPVLFANYRIGDEK-TKINVSYALEEIAKANPMLMAS---IVRDFMSMLSSKNREDKLTA 164
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
E +G YV LP ++ D VR +A A ++ L+ + K+
Sbjct: 165 LNF-----IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA-VEALVHLATLNDKLRKV 218
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
V+ L+ L D + ++ + + + S
Sbjct: 219 VIK-RLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 94.1 bits (233), Expect = 5e-19
Identities = 107/661 (16%), Positives = 194/661 (29%), Gaps = 197/661 (29%)
Query: 1244 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 1303
+D + +FE+ ++ D+ + I + H+ V
Sbjct: 14 HQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGT-L 65
Query: 1304 KLLDVL-NTPSEAVQRAVSSCLSP----LMQSMQDE--APTLVSRL----LDQLMKS--- 1349
+L L + E VQ+ V L LM ++ E P++++R+ D+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1350 ---------DKYGERRGAAFGL---AGVV----KGFGISSLKKYGIAATLREGLADRNSA 1393
Y + R A L V+ G G + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLS-------- 173
Query: 1394 KRREGALLAFEC----LCEKLGRLFEP-YVIQMLPLLLVAF-------SDQVVAVR---E 1438
+ L L P V++ML LL SD ++
Sbjct: 174 ---YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498
+ + R ++ + LVL + + A C
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL--------LNVQ-----NAKAWNAFNL-------SC-- 266
Query: 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA--SLVPTLLMGLTDPNDHTKYS 1556
KI+ LT T +QV + SL M LT
Sbjct: 267 KIL------LT-----------TRFKQVTDFLSAATTTHISLDH-HSMTLTPDE-----V 303
Query: 1557 LDILLQTTFVNTVDAPSLA-----LLVPIVHRGLRERSA-------ETKKKAAQIVGNMC 1604
+LL+ D P + I+ +R+ A K I+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESS 362
Query: 1605 SLVTEPKDMIP-YIGL-LLPE-VK---KVLV----DPIP-EVRSVAARAIG-SLIRGMGE 1652
V EP + + L + P +L D I +V V + SL+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1653 EN---FPDLVSWLLD-ALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--C 1705
E+ P + L+ +K +N + RS + + T + ++P +
Sbjct: 423 ESTISIPSI---YLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1706 S----HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQQVL----------PAILDGLAD- 1748
S H + +TLF+ + F ++ L+Q + +IL+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1749 --------ENESVRDAALGA--------GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792
+N+ + + A L+ T L + L A ++ IF + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 1793 Q 1793
Q
Sbjct: 588 Q 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 1e-16
Identities = 110/721 (15%), Positives = 205/721 (28%), Gaps = 240/721 (33%)
Query: 723 MSITPKDTYVAF-EKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
KD F + + + DC D+Q P+ +LS E+ I I+ +K+
Sbjct: 14 HQYQYKDILSVFEDAFVDNF-DCK--------DVQDM--PKSILSKEE---IDHIIMSKD 59
Query: 782 TKQSKGR-FRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD---IGKSTKKADKGKTA 837
R F + + E + V + + + K + +
Sbjct: 60 AVSGTLRLFWTLLSK------------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 838 K----EEARELLLNEEASIREKVQGVQRNLSLML---SALGEMAIANPVFAHSQL----P 886
E R+ L N+ K V R L L AL E+ A V L
Sbjct: 108 MTRMYIEQRDRLYNDNQVFA-KYN-VSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 887 SLVKFV--DPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSD 944
+ V +Q + + + + L C + L++ L + SD
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSD 218
Query: 945 L---IPSVGEAAKNKESL---------CLF-------ERIVNGLTVSCKSGPLPVDSFTF 985
I + + + CL + N +SCK
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----------- 267
Query: 986 VFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGS 1045
ILL+ + + D + H+
Sbjct: 268 -------ILLTTRFKQVTDFLSAATTTHI------------------------------- 289
Query: 1046 ALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA 1105
+L+ + L P+EV S L + L+ + LP + + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLL-----------LKYLD-------CRPQDLPREVLTTNPRRLS 331
Query: 1106 VHDPEKSVAEAAED---IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAE--ALATALDE 1160
+ +AE+ D WD + + + L + S NV L AE + L
Sbjct: 332 I------IAESIRDGLATWDNWKH---VNCDKLTTIIESS-LNV-LEPAEYRKMFDRLSV 380
Query: 1161 YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL 1220
+P S L + W + D+ V++ L
Sbjct: 381 FPPSAHIPTILLSLI---------------WFD--------------VIKSDVMVVVNKL 411
Query: 1221 ISRALADTNA------------DVRGRMLNAGIM---IIDKH----GRDNVSLLFPIFEN 1261
+L + +++ ++ N + I+D + D+ L+ P +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1262 Y--------LNKKASDEEKYDLVR---------EGVVIFTGALA---------------- 1288
Y L K E+ L R E +
Sbjct: 472 YFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1289 -KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM 1347
++ +DPK +V+ +LD L E + + + L L ++ E + Q+
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIFEEAHKQVQ 588
Query: 1348 K 1348
+
Sbjct: 589 R 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-13
Identities = 92/610 (15%), Positives = 183/610 (30%), Gaps = 154/610 (25%)
Query: 143 HIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKS 202
HI+M + + F+ L S+ ++ + + +E+ + SP ++ +
Sbjct: 53 HIIMSKD-AVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQ 104
Query: 203 PSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKR 262
PS+ + +Y++ + ++ F ++SR + L ++ L+
Sbjct: 105 PSMMTR-------MYIEQR-----DRLYNDNQVFAKY--NVSRLQ-PYLKLRQALLELRP 149
Query: 263 NPEIILES---IGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKS 319
++++ G K+ + L V LS K L + +
Sbjct: 150 AKNVLIDGVLGSG---KTW---V------ALDVCLSYKVQCKMDFKIFWLNL-KNCNSPE 196
Query: 320 SNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK-YLNSL------- 371
+ + L+ + Y I + RI + EL + K Y N L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQ 254
Query: 372 -SLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDL-----LSFFASGLKEK 425
+ F LSC K IL + + K+ D + + L + L
Sbjct: 255 NAKAWNAFNLSC---------K--IL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 426 EALRRGHLRCLRVICTNTDA------VLQVSSLLGPL-IQLVKTGFTKAVQRLDGIYAFL 478
E L + + VL + P + ++ + D + +
Sbjct: 302 EVKS------LLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDN-WKHV 350
Query: 479 IVGKIAAADIKA-----EETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVV 533
K+ I++ E ++ L + +PT ++S + D + V ++V
Sbjct: 351 NCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 534 LLVEHS----HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITS--------- 580
L ++S T S + + L + H R I+
Sbjct: 410 KLHKYSLVEKQPKESTIS---IPSIYLELKVKL--ENEYALH---RSIVDHYNIPKTFDS 461
Query: 581 ---VP-------------HLSEALLLE----FSN-FLSL--VGEKIIISKT------SDT 611
+P HL E F FL + +KI T S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 612 DDFVDSQV--PFL----PSVEVQVKTL---LVIASVALARGPSAS-ARVIFCSHHPSIVG 661
+ + P++ P E V + L L R+ + +I
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 662 TGKRDAVWQR 671
+ QR
Sbjct: 582 EAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 6e-11
Identities = 63/416 (15%), Positives = 123/416 (29%), Gaps = 106/416 (25%)
Query: 2244 ELREQAALGLGELIEVTSEQSLKEF----VIPITGPLIR------IIGDRFPWQVKSAIL 2293
E E +++ V + + F V + ++ II + S L
Sbjct: 10 ETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK---DAVSGTL 65
Query: 2294 STLSIIIRKGGIALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVG 2352
++ K ++ F+ + L+ + K L +T + ++ + D L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSM---MTRMYIEQRDRLYN 121
Query: 2353 D--LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY-------SVLKDLVYHD 2403
D + + VS R L+ L + A + + + + V
Sbjct: 122 DNQVFAKYNVS----RLQPYLKLRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 2404 DDHVRVSAASILGI-MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
I + + C + ++LQ+LL P+W +R + S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRS-----------DHSS 221
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
I + SI L+ LK + + L L+L +Q+ A
Sbjct: 222 NIKLR--IHSIQAELRRLLKSKPYE------NCL--LVLLNVQN------------AKAW 259
Query: 2523 SALHDDSSEVRRRAL--SALKSVAKANPSAIMVHVAL------FGPA-----LAECLKDG 2569
+A + + L + K V +A H++L P L + L
Sbjct: 260 NAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--D 312
Query: 2570 STPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSEDSEND 2625
P L E + +L + A + D+ + D
Sbjct: 313 CRPQDLPREVLTTNPRRL---------------SIIAESIRDGLATWDNWKHVNCD 353
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 75/652 (11%), Positives = 176/652 (26%), Gaps = 172/652 (26%)
Query: 1964 DELIPTIRTALCDSILEV--RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD------ 2015
D + D I+ S L S + + + V L +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMS 96
Query: 2016 ----QTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LSAFNAHAL-GALAEV-AGPGL 2068
+ ++ I + K ++ L + L AL E+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPY--LKLRQALLELRPAKNV 153
Query: 2069 NFH--LG---TILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVS 2115
LG T + + + +L + L E ++ L+
Sbjct: 154 LIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLY 207
Query: 2116 EL---LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD-SDSTTVA 2171
++ D+ ++I+ + + L+ P L+ L + ++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLV--LLNVQNAKA-- 258
Query: 2172 AAWEAL---SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228
W A +++ + + +V D +S + +
Sbjct: 259 --WNAFNLSCKIL------LTTRFKQVT-DFLSAATTTHISLDH----HSMTLTPDEVKS 305
Query: 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP--- 2285
+ L+ L +L + + + +E S+++ L D +
Sbjct: 306 ----LLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDG-------LATW--DNWKHVN 351
Query: 2286 -WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC------------------LQDST 2326
++ + I S+L+ L+P + + F +
Sbjct: 352 CDKLTTIIESSLN--------VLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 2327 RTVRSSAALALGKLSALSTRVDPL---VGDLLSSLQVS---DAGIREAILTALKGVLKHA 2380
V L K S + + + + L+V + + +I+
Sbjct: 402 SDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 2381 GKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL-LNLAS 2439
+ + Y + +H + E + L + + L+
Sbjct: 461 SDDL-IPPYLDQY-FYSHIGHH---------------LKNI-EHPERMTLFRMVFLDF-- 500
Query: 2440 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF-----PLREASTK 2494
+ + +RH+ +A + S L+ L +LK + + P E
Sbjct: 501 --RFLEQK---------IRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYERLVN 546
Query: 2495 ALGRLLLHQIQSGPANTTVVVDILASVV-SALHDDSSEVRRRALSALKSVAK 2545
A+ L ++ ++ AL + + A K V +
Sbjct: 547 AILDFLPK------IEENLICSKYTDLLRIALMAEDEAI---FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-10
Identities = 119/771 (15%), Positives = 215/771 (27%), Gaps = 254/771 (32%)
Query: 1650 MGEEN--FPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
GE + D++S DA + +V+ +L+ +HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-----PKSILS---KEEIDHII------- 55
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL----PAILDGLADENESVRDAALGAG 1761
G L LF L Q ++++VL ++ + E R ++
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSM--- 107
Query: 1762 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV---ELLGDLLFKVAGTSGKALLEGG 1818
+ Y D ++NDN + +V + L +ALLE
Sbjct: 108 --MTRMYIEQ---------RDRLYNDNQVFAKYNVSRLQPYLKLR--------QALLE-- 146
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV-WKTI-VANTP 1876
+ G VLG K +A V + + + W + N+P
Sbjct: 147 -LRPAKNVLIDG-----VLGSGK--TWVAL--DVCLSYKV-QCKMDFKIFWLNLKNCNSP 195
Query: 1877 KTLKEIMPVLMNTL---ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933
+T+ E++ L+ + +S + SS + EL R L + L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCL- 247
Query: 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTL 1992
+ L V ++ AF+
Sbjct: 248 -----------LVLLNV------------------------QNAKAWN-------AFN-- 263
Query: 1993 FKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052
LL T KQ+ + A HI L H ++
Sbjct: 264 LSC----------KILL------TTRF------KQVTDFLSAATTTHI--SLDHHSMTLT 299
Query: 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES 2112
L + Q L +E T + S
Sbjct: 300 PDEVKSLLLKYLD----------------------CRPQDLPREVLTTNPRRL------S 331
Query: 2113 LVSELLKG-----------VGDNQASIRRSS-AYLIGYFYKNSKLY-----LVDEAPNMI 2155
+++E ++ D +I SS L Y+ K++ A
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPT 389
Query: 2156 STLIVLLSDSDSTTVAAAWEALSR--VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 2213
L ++ D + V L + +V PKE I I + + E +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR- 447
Query: 2214 GPILIPGFCLPKALQP--LLPIFLQGLISGSAELREQAALGLG-ELIEVTSEQSLKEFVI 2270
++ + +PK L+P +L +G L + + + F
Sbjct: 448 --SIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHIGHHLKNIEHPERMTLF-- 493
Query: 2271 PITGPLI---------RIIGDRFPWQVKSAILSTLS-IIIRKGGI------------ALK 2308
++ +I D W +IL+TL + K I A+
Sbjct: 494 ----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359
FLP+++ I T +R AL + + + +Q
Sbjct: 550 DFLPKIEENLICS--KYTDLLR----------IALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 3e-10
Identities = 96/677 (14%), Positives = 178/677 (26%), Gaps = 245/677 (36%)
Query: 32 DVTSLIRNTEMSPEIASFL--------VDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTF 83
DV + ++ EI + +F T + +K V++V+ F
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---F 93
Query: 84 MKT-FAAALVQAMEKQSKFQS---------------HVGCYRL-----LKWSCLL-LSKS 121
+ + Q + +V RL L+ LL L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR-QALLELRPA 150
Query: 122 QFATV------SKNALCRVAAAQASLLHIVMQR--------SFRERRACK------QTFF 161
+ + K + A L + V + + + + + Q
Sbjct: 151 KNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 162 HL----FSQSPDIYKTY---TDELKDA--RI----PYKHSPELICLLLEFLS--KSPSLF 206
+ ++ D ++ R+ PY++ CLL+ L ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLV--LLNVQNAKAW 259
Query: 207 E----KCRPIFL--DIYVKAVLNAK-------EKPMKGL----SESFLPLFTHMSREDFQ 249
C+ + V L+A + L +S L + +D
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-- 317
Query: 250 SIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGAL 309
LP +L NP L I ++ L +H + + T
Sbjct: 318 ---LPRE--VLTTNP-RRLSIIAESIRD-GLATWDN-----------WKHVNCDKLT--- 356
Query: 310 TIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLN 369
TII S P MF + +V FP ++
Sbjct: 357 TIIE-SSLNVLEPAEYRKMFDRL-SV---------FP-----------PSAHIPTI---- 390
Query: 370 SLSLTICKFLLSCYKDEGNEEV---KLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
+ L+ + + V KL S V K S I + L+ +
Sbjct: 391 ----LLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEY 443
Query: 427 ALRR---GHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDG-IYAFLIVGK 482
AL R H + ++ L P LD Y+ + G
Sbjct: 444 ALHRSIVDHYNIPKTFDSDD---------LIPP-------------YLDQYFYSHI--GH 479
Query: 483 -IAAADIKAEETVTKEKL-----WSLVSQNEPSLVPTAMISKLSVDD--CMACVELLVVL 534
+ + E + + + K+ D A +L L
Sbjct: 480 HLKNIE-HPERMTLFRMVFLDFRF--------------LEQKIRHDSTAWNASGSILNTL 524
Query: 535 LVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIIT-SVPHLSEALLLEFS 593
++ + I + P E L+
Sbjct: 525 Q-----------------------------QLKFY-----KPYICDNDPKY-ERLVNAIL 549
Query: 594 NFLSLVGEKIIISKTSD 610
+FL + E +I SK +D
Sbjct: 550 DFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-10
Identities = 84/528 (15%), Positives = 160/528 (30%), Gaps = 156/528 (29%)
Query: 1011 YKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKD 1070
+ HMD Y ++ ++ A + C +V + +K+
Sbjct: 4 HHHMD-------FETGEHQYQYKDILSVFEDAFVDNFD--C-----KDVQDMPKSILSKE 49
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-WIAVHDPEKSVAEAAEDIWDRYGYDF- 1128
+ I + + + L W + E+ V + E++ R Y F
Sbjct: 50 E---------IDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 1129 --------------GTDYSGLFKALSHSN-----YNV-RLAAAEALATALDEYPDSIQGS 1168
Y L + N YNV RL L AL E +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKN- 152
Query: 1169 LSTLFSLYIRDIGLGGDNVDAG--WLGRQGIALALHSAADVLRTKDLPVIMTFLI---SR 1223
+ G+ G +G W+ A DV + + M F I +
Sbjct: 153 ----VLID----GVLG----SGKTWV-----------ALDVCLSYKVQCKMDFKIFWLNL 189
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
++ V ML + ID + I L + E L++ +
Sbjct: 190 KNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKP--Y 243
Query: 1284 TGALAKHLAKDD---PKVHAVVD---KLLDVLNTPSEAVQRAVSS------CLSPLMQSM 1331
L L + K + K+L L T + V +S+ L ++
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 1332 -QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390
DE +L+ + LD + L V + + IA ++R+GLA
Sbjct: 299 TPDEVKSLLLKYLD--CRPQD----------LPREVL--TTNPRRLSIIAESIRDGLATW 344
Query: 1391 NSAKRREGALLAFECLCEKLGRLFE-------PYVIQMLPLLLVAFSD------QVVAV- 1436
++ K C+KL + E P + + L F ++++
Sbjct: 345 DNWKHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 1437 -REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1483
+ + ++++L SL++ + K+S++ +
Sbjct: 396 WFDVIKSDVMVVVNKLHKY-------SLVEK------QPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 3e-07
Identities = 80/552 (14%), Positives = 173/552 (31%), Gaps = 165/552 (29%)
Query: 1371 ISSLKKYGIAATLREGLADR------NSAKRREGALLAFECLCEKLGRLFEPYVIQML-- 1422
+ + + + L+ S G L F L K + + +V ++L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1423 --PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
L+ E +MM+++ + D+ + Q
Sbjct: 90 NYKFLMSPI---------KTEQRQPSMMTRMYIEQR------------DRLYN----DNQ 124
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKV-----QSAGQTALQQVGSVIKNP 1533
+ A +S+ + KL + L V +G+T + V +
Sbjct: 125 VF------AKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSY 174
Query: 1534 EIASLVPT----LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589
++ + L + N ++ ++ +LQ +D + + LR S
Sbjct: 175 KVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS 229
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ + + L+ PY LL VL + ++ A + I
Sbjct: 230 IQAELR---------RLLKSK----PYENCLL-----VL-LNVQNAKAWNAFNLSCKI-- 268
Query: 1650 MGEENFPDLV----SWLLDALKSDN-SNVERSGAAQGLSE-----VLA-ALGTVYFEHIL 1698
L+ + D L + +++ + L+ +L L + L
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--L 318
Query: 1699 PDIIRNCSHQR-----ASVRDGYLTL--FKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
P + + +R S+RDG T +K++ + L ++ + L+ L + E
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVL-EPAE 370
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL-GDLLFKVAGTS 1810
R + + L +F + I + L+ D++
Sbjct: 371 -YR-----------KMF--DRL---------SVFPPSAHIPTILLSLIWFDVIK------ 401
Query: 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWK 1869
SD + H +++E + E ++ + ++ + + + ALH +
Sbjct: 402 --------SDVMVVVNKLHKYSLVE---KQ-PKESTISIPSIYLELKVKLENEYALH--R 447
Query: 1870 TIVA--NTPKTL 1879
+IV N PKT
Sbjct: 448 SIVDHYNIPKTF 459
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 91.8 bits (227), Expect = 2e-18
Identities = 112/807 (13%), Positives = 243/807 (30%), Gaps = 142/807 (17%)
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVL 1686
V P A + + EN P + L L + ++ R
Sbjct: 10 TVSPDRLELEAAQKFLERAA----VENLPTFLVELSRVLANPGNSQVARV---------A 56
Query: 1687 AALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
A L I+N + + ++ Y + + N ++V +L
Sbjct: 57 AGL-----------QIKNSLTSKDPDIKAQYQQRWLAID-------ANARREVKNYVLHT 98
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQSSVELLGDLL 1803
L E A+ + P L+P + + N N +++S++E +G +
Sbjct: 99 LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158
Query: 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1863
D + + I+ + M + + S +V+ A
Sbjct: 159 ---------------QDIDPEQLQDKSNEILTAI----------IQGMRKEEPSNNVKLA 193
Query: 1864 ALHVWKTIVANTPKTLK--EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
A + + T +M + + + R A + L +++ + +
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
+ P L + S V + E ++ ++ +L A
Sbjct: 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-----DLAIEASEAAEQGRPPE 308
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---------TALDGLKQILSVR 2032
S A A+ +VP L L +D A L + +
Sbjct: 309 HTSKFYA---------KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359
Query: 2033 TTAVLPHILPKLVHLPLSAFNAH------ALGALAEVAGPG-LNFHLGTILPALLSAMGD 2085
++PH+LP + + + A G + E P L + +P L+ M D
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 2086 DDMDVQS-----LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-------------AS 2127
+ V+ + + I++ + L+ L++G+ A
Sbjct: 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE 479
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASV 2184
+A + + + L ++ L+ D + ++A+E+L +V +
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539
Query: 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244
K+ P+ K +++ L + LQ I +
Sbjct: 540 AKDCYPAVQKTT------------------LVIME--RLQQVLQMESHIQSTSDRIQFND 579
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKG 2303
L+ L ++ Q + + L+R+ V+ L +S ++
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRT-VRSSAALALGKLS-ALSTRVDPLVGDLLSSL--- 2358
G ++ + L++ V +A +G L AL + + P +++ L
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN 699
Query: 2359 ---QVSDAGIREAILTALKGVLKHAGK 2382
+ ++ IL+ + G
Sbjct: 700 LGNENVHRSVKPQILSVFGDIALAIGG 726
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 1e-15
Identities = 118/860 (13%), Positives = 242/860 (28%), Gaps = 120/860 (13%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L EAA+ + + + + + L L + L + + ++ +
Sbjct: 6 ILEKTVSPDRLELEAAQ----KFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 1483 ------------GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ ++ + L + SA Q + I
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI 121
Query: 1531 KNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRGL 1585
+ L+P L+ +T+PN H K S + ++ + +G+
Sbjct: 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181
Query: 1586 R--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
R E S K A + N D ++ V + P VR A + +
Sbjct: 182 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
++ + + L + A QG+ D+
Sbjct: 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN------VCDEEMDLAI 295
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
S R T Y +L L Q L + D++ + AA +
Sbjct: 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE------- 1816
L +P +LP +++ I N +WR R ++V G +L + K L+
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 1817 GGSDDE-----GASTEAHGR---AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868
D + GR + E D L + V +
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474
Query: 1869 KTIVANT--------------PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
++ L +++ L+ + + + A L+
Sbjct: 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534
Query: 1915 KLG----------ERVLPSIIP-----------ILSRGLKDPSASRRQGVCIGLSEVMAS 1953
+ ++ I+ I S + + +C L V+
Sbjct: 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSI--LEVRESAGLAFSTLFKSAG---MQAIDEIVPTL 2008
L D ++ ++ + V+E A +A STL + G ++ ++ P L
Sbjct: 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL 654
Query: 2009 LHALEDDQTSDT-----ALDG---------LKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054
L++ L G + +L ++ + VH +
Sbjct: 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQIL 714
Query: 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV 2114
G +A G +L +L L A + + E
Sbjct: 715 SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RESCLEAY 769
Query: 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST--TVAA 2172
+ +++G+ +Q ++ + ++S + + D D T VA
Sbjct: 770 TGIVQGLKGDQENVHPDVMLVQPR------------VEFILSFIDHIAGDEDHTDGVVAC 817
Query: 2173 AWEALSRVVASVPKEVQPSY 2192
A + + + K+V
Sbjct: 818 AAGLIGDLCTAFGKDVLKLV 837
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 7e-15
Identities = 103/774 (13%), Positives = 232/774 (29%), Gaps = 107/774 (13%)
Query: 1391 NSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDTH--------------------PKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW- 380
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ AA + EP + P + +P + +++ DP VR AA +G + +
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS 1706
E L+ L++ L V + +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLS-AEPRVASNVCW-----------------AFSSLAEAAY 482
Query: 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766
D L + Q L D ++R +A + +V+
Sbjct: 483 EAADVADDQEEPATYCL-----SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826
+ A P + + E L +L + + +D +
Sbjct: 538 NSAKDCYPAVQKTTLVIM------------ERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 1827 EAHGRAIIEVLGRDKR---NEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKE 1881
+ +V +D + V+A+L + S V++ AL T+V +
Sbjct: 586 ATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645
Query: 1882 IMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSA 1937
M L L + + A +G+L R L ++P ++ +L L + +
Sbjct: 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV 705
Query: 1938 SR--RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + + + +A A + +++ ++ T++ A + + + L
Sbjct: 706 HRSVKPQILSVFGD-IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL--- 761
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH 2055
++ E ++ L+ DQ + L Q +L I +
Sbjct: 762 --RESCLEAYTGIVQGLKGDQENVHPDVMLVQPR---VEFILSFIDHIAGDEDHTDGVVA 816
Query: 2056 A----LGALAEVAGPGL--NFHLGTILPALLS-AMGDDDMDVQSLAKEAAETVT 2102
+G L G + ++ LL+ ++LA+ A + +
Sbjct: 817 CAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELR 870
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 1e-14
Identities = 116/863 (13%), Positives = 272/863 (31%), Gaps = 159/863 (18%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-- 1265
++LP + L R LA+ R+ AG+ I +++++ P + +
Sbjct: 28 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGLQI-----KNSLTSKDPDIKAQYQQRW 80
Query: 1266 KASDEEKYDLVREGVV-----------IFTGALAKHLAKDDPKVH--AVVDKLLDVLNTP 1312
A D V+ V+ + +A + P ++ +L+ + P
Sbjct: 81 LAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140
Query: 1313 S--EAVQRAVSSCLSPLMQS-----MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGV 1365
+ E ++ + + + Q +QD++ +++ ++ + K + + AA
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200
Query: 1366 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECL---CEKLGRLFEPYVIQML 1422
F ++ K + + + + + A + L + E Y+ L
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260
Query: 1423 PLLLVAF--SDQVVAVREAAEC------AARAMMSQLSAQGVKLVLPSLLKGL------- 1467
+ + SD + E + + S + P
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320
Query: 1468 -----------------EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510
+D W +++ L +A C +P ++P + E + +
Sbjct: 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKN 377
Query: 1511 THPKVQSAGQTALQQVGSVIK----NPEIASLVPTLLMGLTDPNDHTKYS----LDILLQ 1562
+ + A A + + P + +PTL+ + DP+ + + + + +
Sbjct: 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD---------- 1612
++ LA L+ + GL ++ E D
Sbjct: 438 LLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496
Query: 1613 --MIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEENFP----------- 1656
+ L++ ++ + P +RS A ++ +++ ++ +P
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1657 ------DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR------N 1704
+ S + N +S L VL + I ++
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALG---- 1759
+ V++ L L LG +F Y++ P + GL + V AA+G
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1760 ---AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
A + + + LLL + + + + ++ + + GD+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHRS--VKPQILSVFGDIALAI---------- 724
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV---- 1872
G + + ++ L + + +V + Y + D +R++ L + IV
Sbjct: 725 ------GGEFKKYLEVVLNTLQQASQAQVDKSDYDMV-DYLNELRESCLEAYTGIVQGLK 777
Query: 1873 ---ANTPKTLKEIMPVLMN-----TLISSLASSSSERRQVAGRALGELVRKLGERVL--- 1921
N + + P + I+ + A +G+L G+ VL
Sbjct: 778 GDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837
Query: 1922 ---PSIIPILSRGLKDPSASRRQ 1941
P I +L+ G + + +
Sbjct: 838 EARPMIHELLTEGRRSKTNKAKT 860
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 9e-14
Identities = 97/704 (13%), Positives = 199/704 (28%), Gaps = 136/704 (19%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
+ +A + VR+AA + L + Y ++
Sbjct: 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYME---------------------------- 253
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
+ + + A+ +V +
Sbjct: 254 ----------------TYMGPALFAITIEAMKSDIDEVA---------------LQGIEF 282
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ + ++ E + R L P + + K + +
Sbjct: 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374
+A CL L +D+ V + + +K+ + R A +++G S L
Sbjct: 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402
Query: 1375 KKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--EPYVIQMLPLLLVAFS 1430
K TL E + D + R+ A +CE L + Y+ +L L+
Sbjct: 403 KPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL- 460
Query: 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
V C A SL + + + + A
Sbjct: 461 SAEPRVASNV-CWA---------------FSSLAEAAYE--------AADVADDQEEPAT 496
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PEIASLVPTLL- 1543
LS IV KL E + +A + + ++KN P + ++
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1544 -MGLTDPNDHTKYSLD-----ILLQTTFVNTVDAPSLALLVPIVHR-------------G 1584
+ + S LQ+ T+ + +
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAI 1643
S ++ A V + ++ + + Y+ P + L + +V A +
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV 674
Query: 1644 GSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYFEHILP 1699
G L R + +++ LL+ L ++N + + ++ A+G F+ L
Sbjct: 675 GDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFKKYLE 733
Query: 1700 DIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
++ +A V + YL + + + I+ GL + E+V +
Sbjct: 734 VVLNTLQQASQAQVDKSDYDMVDYL-----NELRESCLEAYTGIVQGLKGDQENVHPDVM 788
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LV+ L + D D + + L+GDL
Sbjct: 789 -----LVQPRVEFILSFIDHIAGDEDHTDG--VVACAAGLIGDL 825
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 6e-12
Identities = 80/555 (14%), Positives = 166/555 (29%), Gaps = 75/555 (13%)
Query: 1144 YNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203
+N AA L D I + +I++ W R +A
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---------PDWRYRDAAVMAFGC 392
Query: 1204 AADVLRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVS-----LL 1255
+ L ++ + + D + VR I + ++ L
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 1256 FPIFENYLNKKASDEEK--------YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
L+ + + E + +V KLL+
Sbjct: 453 LQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPT---LVSRLLDQLMK----------SDKYGE 1354
+ P SS LM+ +++ A V + +M+ +
Sbjct: 513 TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572
Query: 1355 RRGAAFGLAGVVKGFGISSLKKYG-----------IAATLREGLADRNSAKRREGALLAF 1403
R L ++ + L+K +A+ LR + S +E AL+A
Sbjct: 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQV-VAVREAAECA----ARAMMSQLSAQGVKL 1458
L E LG F Y+ P L + + V AA RA+ S +
Sbjct: 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDE 691
Query: 1459 VLPSLLKGLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
V+ LL+ L ++ K + + G +A + + L ++ L + K
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751
Query: 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576
L ++ ++ GL ++ + ++ L+
Sbjct: 752 YDMVDYLNELRE-----SCLEAYTGIVQGLKGDQENVHPDVMLVQP------RVEFILSF 800
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPIP 1633
+ I + + AA ++G++C+ KD++ + ++ + +
Sbjct: 801 IDHIAGD--EDHTDGVVACAAGLIGDLCTAF--GKDVLKLVEARPMIHELLTEGRRSKTN 856
Query: 1634 EVRSVAARAIGSLIR 1648
+ +++A A L +
Sbjct: 857 KAKTLARWATKELRK 871
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 104/733 (14%), Positives = 231/733 (31%), Gaps = 111/733 (15%)
Query: 1889 TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGL- 1947
T++ S + A + L + L + +L+ A R + +
Sbjct: 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--RVAAGLQIK 62
Query: 1948 ------SEVMASAGKSQLLSFMDELIPTIRT----ALCDSILEVRESAGLAFSTLFKSAG 1997
+ + + + L+ ++ L ++
Sbjct: 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIP 122
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
+ E++P L+ + + +++ + + + + P L
Sbjct: 123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-------------- 168
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AETVTLVIDEEGVE 2111
IL A++ M ++ +V+ A A E D+E
Sbjct: 169 -------------KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER 215
Query: 2112 SLVSELLKGVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166
+ +++ + R +A ++ +Y+ + Y+ + T+ + SD D
Sbjct: 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI--TIEAMKSDID 273
Query: 2167 STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226
+ E + D + + + + P F A
Sbjct: 274 EVALQGI-------------EFWSNVCDEEMDLAIEASEAAEQGRP--PEHTSKFYAKGA 318
Query: 2227 LQPLLPIFLQGLISGSAE-------LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
LQ L+PI Q L + A + L L + ++P P I+
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IVPHVLPFIKE 373
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIA-LKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 2338
W+ + A + I+ + LKP + Q T I+ ++D + VR +AA +G
Sbjct: 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433
Query: 2339 KLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398
++ +LL ++D + + ++G+ A V+S V +S L +
Sbjct: 434 RIC-----------ELLPEAAINDVYLAPLLQCLIEGL--SAEPRVASNV-CWAFSSLAE 479
Query: 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 2458
Y D +S E + L E + R + ++
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 2459 HNPSAIS--MSPLFLSILDRLKSSLK--------DEKFPLREASTKALGRLLLHQIQSGP 2508
++ + L I++RL+ L+ ++ + + L +
Sbjct: 538 NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 597
Query: 2509 ANTTVVVDILASVVSALH---DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC 2565
+ + D++ + + + S V+ AL A+ ++ + + ++ F P L
Sbjct: 598 QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 657
Query: 2566 LKDGSTP-VRLAA 2577
LK+ + V LAA
Sbjct: 658 LKNYAEYQVCLAA 670
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 46/255 (18%)
Query: 2325 STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384
S + A+ G + D + LL ++ R + L +
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDDELFRLLDD---HNSLKRISSARVL-QLRGGQ---- 53
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM--SQCMEDGQLADLLQELLNLASSPS 2442
+ + + R A ILG + + ED L LN S
Sbjct: 54 ------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKS 104
Query: 2443 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502
R ++ A + NP I+++ + + D+ +R A+ A+ +
Sbjct: 105 ACVRATAIESTAQRCKKNPIYS------PKIVEQSQITAFDKSTNVRRATAFAISVI--- 155
Query: 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 2562
N + +L ++ L D + +VR A A+ N
Sbjct: 156 -------NDKATIPLL---INLLKDPNGDVRNWAAFAININKYDNSDIR--------DCF 197
Query: 2563 AECLKDGSTPVRLAA 2577
E L+D + VR+ A
Sbjct: 198 VEMLQDKNEEVRIEA 212
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 44/336 (13%), Positives = 86/336 (25%), Gaps = 69/336 (20%)
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305
+ +A+ G K+ L R++ D + + L
Sbjct: 7 KRKASKEYGLY------NQCKKLNDD---ELFRLLDDHN-SLKRISSARVL------QLR 50
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAG 2364
+ + I+ D R A LG++ D + L + A
Sbjct: 51 GGQDAVRLA----IEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSAC 106
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+R + + K V+ + + +VR + A + + D
Sbjct: 107 VRATAIESTAQRCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAIS----VIND 157
Query: 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 2484
LL LL P+ R+ + N D L+D+
Sbjct: 158 KATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIR----------DCFVEMLQDK 204
Query: 2485 KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544
+R + L V+ +L L + V + A +
Sbjct: 205 NEEVRIEAIIGLSYR----------KDKRVLSVL---CDELKKN--TVYDDIIEAAGEL- 248
Query: 2545 KANPSAIMVHVALFGPALAECLKDGSTP-VRLAAER 2579
+ + + P L L + +A
Sbjct: 249 -GDKTLL--------PVLDTMLYKFDDNEIITSAID 275
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 44/306 (14%), Positives = 83/306 (27%), Gaps = 66/306 (21%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + L D N R ++ L ++ L + D N+ R
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARV---LQLRGGQDAVRLAIEFCSD----KNYIRRDIG 74
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+LG + + + +L M +D
Sbjct: 75 AFILGQI---------------------KICKKCEDNVFNIL-----------NNMALND 102
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
S VR A+ P +I+ + S+ R+ A+ +
Sbjct: 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQS----QITAFDKSTNVRRATAFAISVIND- 157
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
+ IP+L LKDP+ R ++ ++ L
Sbjct: 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ 202
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA 2035
D EVR A + S ++ L L+ + D ++ ++
Sbjct: 203 DKNEEVRIEAIIGLSYR-------KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLP 255
Query: 2036 VLPHIL 2041
VL +L
Sbjct: 256 VLDTML 261
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 48/310 (15%)
Query: 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
+QC +L +L D + + + LQ G V + +D N
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNY 68
Query: 1552 HTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
+ IL Q + +L + L ++SA + A + C
Sbjct: 69 IRRDIGAFILGQIKICKKCEDNVFNILN---NMALNDKSACVRATAIESTAQRCKKNPIY 125
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
++ + + D VR A AI + N + L++ LK N
Sbjct: 126 SP------KIVEQSQITAFDKSTNVRRATAFAISVI-------NDKATIPLLINLLKDPN 172
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
+V R+ AA ++ + I + + VR + L
Sbjct: 173 GDV-RNWAAFAIN--INKYDN---SDIRDCFVEMLQDKNEEVRIEAI-------IGLS-Y 218
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
++ ++VL + D L V D + A E T LP+L + D+
Sbjct: 219 RKD--KRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDNE 268
Query: 1791 IRQSSVELLG 1800
I S+++ L
Sbjct: 269 IITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 47/323 (14%), Positives = 99/323 (30%), Gaps = 53/323 (16%)
Query: 2095 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154
++A++ L + + EL + + D+ + R SSA ++ +
Sbjct: 8 RKASKEYGLYNQCK--KLNDDELFRLLDDHNSLKRISSARVLQLR----------GGQDA 55
Query: 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 2214
+ I SD + L ++ + K+ + + ++ + + R
Sbjct: 56 VRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNILNNMALNDKSACVRATAIE 113
Query: 2215 PILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG 2274
P ++ S +R A + + + IP
Sbjct: 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI--------NDKATIP--- 162
Query: 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAA 2334
LI ++ D V++ ++ I + ++ ++ LQD VR A
Sbjct: 163 LLINLLKDP-NGDVRNWAAFAIN-INKYDNSDIRDCF-------VEMLQDKNEEVRIEAI 213
Query: 2335 LALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS 2394
+ L + L +L + + I+ A G L +
Sbjct: 214 IGLSYRKDKRV-LSVLCDEL------KKNTVYDDIIEAA-GELGDK----------TLLP 255
Query: 2395 VLKDLVYHDDD-HVRVSAASILG 2416
VL ++Y DD + SA L
Sbjct: 256 VLDTMLYKFDDNEIITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 44/293 (15%)
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
L L +S +R + R L G + + D + RR L +
Sbjct: 28 LFRLLDDHNSLKRISSARVLQLR----GG---QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80
Query: 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 2009
+ + AL D VR +A + + K + + +IV
Sbjct: 81 IKICKKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-PKIVEQSQ 134
Query: 2010 HALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
D T+ + I T +L ++L K + + + A A+ + +
Sbjct: 135 ITAFDKSTNVRRATAFAISVINDKATIPLLINLL-KDPNGDVRNWAAFAIN-INKYDNS- 191
Query: 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
I + + D + +V+ EA ++ D+ + L EL + +
Sbjct: 192 ------DIRDCFVEMLQDKNEEVR---IEAIIGLSYRKDKRVLSVLCDEL------KKNT 236
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV-AAAWEALSR 2179
+ G ++ L +L D + +A + L R
Sbjct: 237 VYDDIIEAAGEL----------GDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 7e-07
Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 66/284 (23%)
Query: 1897 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956
S++ +++ A + G L + L R L D ++ +R L
Sbjct: 2 SNTYQKRKASKEYG-----LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG---- 52
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016
+ + D R+ + + D + L + +D+
Sbjct: 53 -------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE--DNVFNILNNMALNDK 103
Query: 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076
++ VR TA + + + I+
Sbjct: 104 SAC-----------VRATA------------------IESTAQRCKKNP----IYSPKIV 130
Query: 2077 PALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
D +V+ + A ++++ D+ + L+ LLK D +R +A+ I
Sbjct: 131 EQSQITAFDKSTNVR---RATAFAISVINDKATIPLLI-NLLK---DPNGDVRNWAAFAI 183
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 2180
++ ++ + +L D + A LS
Sbjct: 184 NINKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 67/335 (20%)
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
SN + A++ + L L D L R
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDD-ELFRLLD-------------DHNSLKR------- 40
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA--GIMIIDKHGRDNVSLLFPIF 1259
S+A VL+ + + I +D N R I I K + ++L +
Sbjct: 41 ISSARVLQLRGGQDAVRLAI-EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99
Query: 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRA 1319
N D+ VR + + A+ K+ +V++ S V+RA
Sbjct: 100 LN-------DKSAC--VRATAI---ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRA 147
Query: 1320 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ +S + + L+ L+K R AAF + I+ I
Sbjct: 148 TAFAISVI------NDKATIPLLI-NLLKDPNGDVRNWAAFAI-------NINKYDNSDI 193
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
E L D+N R E A++ L + ++L +L V
Sbjct: 194 RDCFVEMLQDKNEEVRIE-AIIG-------LSYRKDK---RVLSVLCDELKKNTVYDD-- 240
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
A +L + + VL ++L +D T
Sbjct: 241 ---IIEAAG-ELGDKTLLPVLDTMLYKFDDNEIIT 271
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 40/287 (13%), Positives = 84/287 (29%), Gaps = 53/287 (18%)
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115
+ L G + + D + + A + + + E V
Sbjct: 43 SARVLQLRGGQ-------DAVRLAIEFCSDKNYIRRD---IGAFILGQIKICKKCEDNVF 92
Query: 2116 ELLKGV--GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+L + D A +R ++ K + +Y +P ++ + D + A
Sbjct: 93 NILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRAT 148
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233
A+S + + I ++ + + + + R I I + +
Sbjct: 149 AFAISVIND-------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNSDIRDCFV-- 198
Query: 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAIL 2293
+ L + E+R +A +GL ++ L L + V I+
Sbjct: 199 --EMLQDKNEEVRIEAIIGLSYR---KDKRVLS--------VLCDELKKN---TVYDDII 242
Query: 2294 STLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGK 2339
G + K LP L L + +SA L +
Sbjct: 243 EAA------GELGDKTLLPVLD----TMLYKFDDNEIITSAIDKLKR 279
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-15
Identities = 82/551 (14%), Positives = 157/551 (28%), Gaps = 97/551 (17%)
Query: 2076 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 72
Query: 2128 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
R +A + + L + I L+ +L + + A L ++
Sbjct: 73 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 128
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
Q +R A GG L + L + +
Sbjct: 129 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 156
Query: 2246 REQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR- 2301
L L E L L+ I+ ++ L ++
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQ---ALVNIMRTYTYEKLLWTTSRVLKVLSVC 213
Query: 2302 ---KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV---DPLVGDLL 2355
K I + L L D ++ + + L LS +T+ + L+G L+
Sbjct: 214 SSNKPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 269
Query: 2356 SSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY--HDDDHVRVSAAS 2413
L D + L + + K+ ++ L V D + + A
Sbjct: 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329
Query: 2414 ILGIMSQCMEDGQL-------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
L ++ ++ ++ L ++ L PS + + L P+ +
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 389
Query: 2467 ------SPLFLSILDR------------LKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508
P + +L R E + E G LH +
Sbjct: 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG--ALHILARDV 447
Query: 2509 ANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECL 2566
N V+ + V L+ ++R A L +A+ +A + L E L
Sbjct: 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507
Query: 2567 KDGSTPVRLAA 2577
+ V A
Sbjct: 508 HSRNEGVATYA 518
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 7e-08
Identities = 68/541 (12%), Positives = 159/541 (29%), Gaps = 84/541 (15%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----AIDEIVPTLLHALEDDQTSDT-- 2020
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 2021 ----ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN----AHALGALAEVAGPGLNFHL 2072
L L +P LV + L + +A+ L + +
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKM-LGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 2073 GTI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKG 2120
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT 193
Query: 2121 VGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 194 --YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLR 249
Query: 2179 RVVASVPKEVQPS-YIKVIRDAISTSRDKERRK--------KKGGPILIPGFCLPKALQP 2229
+ + K+ + + + + C ++
Sbjct: 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309
Query: 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRIIGDRFPW 2286
L+ L+ ++ E A L L E + + + + +++++ W
Sbjct: 310 LVRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 2287 QVKSAILSTLSI----------IIRKGGIALKPFLPQLQTT---------------FIKC 2321
+ A + + + +G I P L QL
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAI---PRLVQLLVRAHQDTQRRTSMGGTQQQFV 424
Query: 2322 LQDSTRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKG 2375
+ AL L A ++ + L I+ L
Sbjct: 425 EGVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL-C 482
Query: 2376 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL 2435
L ++ + + L +L++ ++ V AA++L MS+ L EL
Sbjct: 483 ELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELT 542
Query: 2436 N 2436
+
Sbjct: 543 S 543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-05
Identities = 65/464 (14%), Positives = 130/464 (28%), Gaps = 84/464 (18%)
Query: 1284 TGALAKHLAKDDPKVHAV-----VDKLLDVLNTPSEAVQRAVSSCLS------------- 1325
L L + AV + K++ +LN + + CL
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 1326 -------PLMQ--------SMQDEAPTLVSRL------------------LDQLMKSDKY 1352
L+ + ++ L L +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 1353 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC----E 1408
+ + L + G+ TL + L + A L +
Sbjct: 239 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYK 296
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPS 1462
+ + I+ L ++ D+ A +R ++++ V+L LP
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 1463 LLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
++K L W +++V L+ +A C +P+L ++L H Q
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 1522 ALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579
Q V ++ EI L L + H + + ++ L V
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVI-----------RGLNTIPLFVQ 464
Query: 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+ L ++ AA ++ + E + I G + ++L V + A
Sbjct: 465 L----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYA 518
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683
A + + ++ L L +L A GL
Sbjct: 519 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLD 562
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-04
Identities = 72/547 (13%), Positives = 162/547 (29%), Gaps = 101/547 (18%)
Query: 1886 LMNTLISSLASSSS-ERRQVAGRALGEL---------VRKLGERVLPSIIPILSRGLKDP 1935
+++ ++ ++ +++ E + L L + K G IP L + L P
Sbjct: 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG------GIPALVKMLGSP 110
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL-FK 1994
S L ++ +++ + + + L + ++ L +
Sbjct: 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170
Query: 1995 SAGMQAI---DEIVPTLLHALEDDQTSD------TALDGLKQILSVRTTAVLPHILPKLV 2045
+ + I L++ + L L S + V + L
Sbjct: 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230
Query: 2046 HLPLSAFN----AHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQ--------S 2092
L+ + + L L ++ + +L L+ +G DD++V +
Sbjct: 231 LH-LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 2093 LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF----YKNSKLYLV 2148
L + +V G+E+LV +L+ ++ I + + + +
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNA 347
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA--------I 2200
+ ++ LL + A L R +A P+ +R+ +
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-----CPANHAPLREQGAIPRLVQL 402
Query: 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 2260
++ +++ F ++ E+ E L L
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRME---------------EIVEGCTGALHILARDV 447
Query: 2261 SEQSL--KEFVIPITGPLIRIIGDRFPWQVKSA--ILSTLS-------IIIRKGGIALKP 2309
+ + IP ++++ + A +L L+ I +G A
Sbjct: 448 HNRIVIRGLNTIP---LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP-- 502
Query: 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA--LSTRVDPLVGDLLSSLQVSD-AGIR 2366
+ L V + AA L ++S L +L SSL ++
Sbjct: 503 --------LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWN 554
Query: 2367 EAILTAL 2373
E L
Sbjct: 555 ETADLGL 561
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 4e-15
Identities = 94/622 (15%), Positives = 180/622 (28%), Gaps = 107/622 (17%)
Query: 2014 DDQTSDTALDGLKQILSVRTT---AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070
D Q + T ++ + T +P H A L +N+
Sbjct: 82 DGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINY 141
Query: 2071 HLGTI-----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 2117
+P L + D+D V L+K+ A ++ + V ++V +
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
N R ++ + + L + I L+ +L + + A
Sbjct: 202 QNT---NDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAIT 256
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235
L ++ Q +R A GG L +
Sbjct: 257 TLHNLLLH-----QEGAKMAVRLA-------------GG----------------LQKMV 282
Query: 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK---SAI 2292
L + + L L E L L+ I+ ++ S +
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342
Query: 2293 LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345
L LS+ I+ GG+ L L D ++ + + L LS +T
Sbjct: 343 LKVLSVCSSNKPAIVEAGGM---QALGLH-------LTDPSQRLVQNCLWTLRNLSDAAT 392
Query: 2346 RV---DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY- 2401
+ + L+G L+ L D + L + + K+ ++ L V
Sbjct: 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452
Query: 2402 -HDDDHVRVSAASILGIMSQCMEDGQLA-------DLLQELLNLASSPSWAARHGSVLVF 2453
D + + A L ++ +D ++A L ++ L PS + +
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512
Query: 2454 ATFLRHNPSAISM------SPLFLSILDR----------LKSSLKDEKFPLREASTKALG 2497
L P+ + P + +L R + + + +R
Sbjct: 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572
Query: 2498 RLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555
LH + N V+ + V L+ ++R A L +A+ +A +
Sbjct: 573 TGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632
Query: 2556 ALFGPALAECLKDGSTPVRLAA 2577
L E L + V A
Sbjct: 633 EGATAPLTELLHSRNEGVATYA 654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 6e-09
Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 43/287 (14%)
Query: 2318 FIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSDAGIRE 2367
K L D + V + AA+ + +LS V +V + ++ +D
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETAR 211
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYS-----VLKDLVYHDDDHVRVSAASILGIMSQCM 2422
L + S + ++ L +++ D V A + L +
Sbjct: 212 CTSGTLHNL------SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265
Query: 2423 EDGQL----ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS---AISMSPLFLSILD 2475
E ++ A LQ+++ L + + + N I S ++++
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 325
Query: 2476 RLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVR 2533
+++ ++ L +++ L L + +N +V+ + ++ L D S +
Sbjct: 326 IMRTYTYEK---LLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 2534 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ L L++++ A + L L + L V A
Sbjct: 378 QNCLWTLRNLSDAATKQEGMEGLL--GTLVQLLGSDDINVVTCAAGI 422
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-07
Identities = 89/601 (14%), Positives = 178/601 (29%), Gaps = 124/601 (20%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----DEIVPTLLHALEDDQTSDT-- 2020
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 2021 ----ALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGLNFHLG 2073
L L +P LV++ P+ + HA+ L + +
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271
Query: 2074 TI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGV 2121
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT- 329
Query: 2122 GDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 330 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRN 386
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239
+ + K+ ++ LL +Q L
Sbjct: 387 LSDAATKQE-------------------------------------GMEGLLGTLVQLLG 409
Query: 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITG--PLIRIIGDRFP-WQVKSAILSTL 2296
S + AA L L + K V + G L+R + + + L
Sbjct: 410 SDDINVVTCAAGILSNL--TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467
Query: 2297 SIIIRKGG--------IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-- 2346
+ + + L LP + +K L + A + L + AL
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVV----VKLLHPPSHWPLIKATVGLIRNLALCPANH 523
Query: 2347 --------VDPLVGDLLSS---------------LQVSDAGIREAILTALKGVLKHAGKS 2383
+ LV LL Q + E I+ A G L +
Sbjct: 524 APLREQGAIPRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582
Query: 2384 VSSAVKIR---VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL---ADLLQELLNL 2437
+ + + IR + L+Y ++++ AA +L ++Q E + L L
Sbjct: 583 IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642
Query: 2438 ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKAL 2496
S + + V P + L SSL + E E L
Sbjct: 643 LHSRNEGVATYAAAVLFRMSEDKPQDYKK-----RLSVELTSSLFRTEPMTWNETGDLGL 697
Query: 2497 G 2497
Sbjct: 698 D 698
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-04
Identities = 65/462 (14%), Positives = 138/462 (29%), Gaps = 82/462 (17%)
Query: 1284 TGALAKHLAKDDPK------VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
L +L + + K++ +LN + + CL L Q+
Sbjct: 255 ITTLH-NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313
Query: 1338 LVS----RLLDQLMKSDKYGERRGAAFGL----------------AGVVK---------- 1367
+++ + L +M++ Y + + AG ++
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 373
Query: 1368 -------GFGISSLKKYGIAATLREG-------LADRNSAKRREGALLAFECLC----EK 1409
+ + +L EG L + A L +
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPSL 1463
+ + I+ L ++ D+ A +R ++++ V+L LP +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493
Query: 1464 LKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQ 1520
+K L W +++V L+ +A C +P+L ++L H Q ++
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580
QQ ++ EI L L + H + + ++ L V +
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVI-----------RGLNTIPLFVQL 601
Query: 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++ AA ++ + E + I G + ++L V + AA
Sbjct: 602 ----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYAA 655
Query: 1641 RAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
+ + ++ L L +L GL
Sbjct: 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-14
Identities = 80/553 (14%), Positives = 155/553 (28%), Gaps = 101/553 (18%)
Query: 2076 LPALLSAMGDDDMDVQS--------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V + L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 75
Query: 2128 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
R +A + + L + I L+ +L + + A L ++
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 131
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
Q +R A GG L + L + +
Sbjct: 132 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 159
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR---- 2301
L L E L L+ I+ ++ L ++
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219
Query: 2302 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR---VDPLVGDLLSSL 2358
K I + L L D ++ + + L LS +T+ ++ L+G L+ L
Sbjct: 220 KPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275
Query: 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH--VRVSAASILG 2416
D + L + + K+ ++ L V D + A L
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Query: 2417 IMSQCMEDGQL-------ADLLQELLNLASSPS--------WAA---------------R 2446
++ ++ ++ L ++ L PS
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 2447 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS 2506
G++ L + ++ E+ + E T AL L
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE--IVEGCTGALHILARD---- 449
Query: 2507 GPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 2564
N V+ + V L+ ++R A L +A+ +A + L E
Sbjct: 450 -VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 508
Query: 2565 CLKDGSTPVRLAA 2577
L + V A
Sbjct: 509 LLHSRNEGVATYA 521
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 5e-14
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 12/210 (5%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATL 1383
+ +Q L + + + A L + +S+ TL
Sbjct: 35 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL 94
Query: 1384 REGLADRNSAKRREGALL---AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
R + N A + L E + + + + V +P LL+ + +R +
Sbjct: 95 R--FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+ + + P LL L+ K R + + ++ A + +
Sbjct: 153 RDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK-SLSV 208
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ + D V++A L
Sbjct: 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFE 238
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504
+SQL SL+ L K ++ +++ L +A +P+ L ++
Sbjct: 33 DEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWC 92
Query: 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDHTKYSL 1557
T +T+P + + +I++ E+++ VP LL+ + D+ + S+
Sbjct: 93 TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
+ D + P++ L+ ++A + + ++ +T
Sbjct: 153 ----RDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY---ITNAGISPLKS 205
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658
+ V + D VR+ A + + + G++ +
Sbjct: 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 5e-06
Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+ + + + Q + +P +L + +++R + +VL + + P
Sbjct: 114 IVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTP 170
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLL 1803
+ D + + N R R + ++ +
Sbjct: 171 MLLDALKSKNARQRSECLLVIEYYI 195
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 9e-05
Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 15/191 (7%)
Query: 1989 FSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHILPKLVHL 2047
F FK + A+D L+ + S + D L + ++R P L K++
Sbjct: 56 FHKDFKQ-HLAALDS----LVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE- 109
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
+ + + P + +P LL G+ ++++ ++ ++ V+
Sbjct: 110 ----LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-- 163
Query: 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS 2167
G + LL + A R +I Y+ N+ + + + T+ + D D
Sbjct: 164 -GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPFVGDKDV 221
Query: 2168 TTVAAAWEALS 2178
AA L
Sbjct: 222 NVRNAAINVLV 232
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 8/206 (3%)
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
D H ++ + LL+ E + K ++ + L
Sbjct: 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL 117
Query: 1607 VTEPKDMI--PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664
+ + + + + +P + + +R+ + L +G + LLD
Sbjct: 118 IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLD 174
Query: 1665 ALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
ALKS N+ RS + + G + + + + +VR+ + +
Sbjct: 175 ALKSKNARQ-RSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLAD 1748
+ G Q ++ + +
Sbjct: 234 CFKFEGDQMWKAAGRMADKDKSLVEE 259
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 3e-04
Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 25/246 (10%)
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSP 1326
+DE L +L L D K H A +D L+ + +T ++ L
Sbjct: 32 TDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKW 91
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA--TLR 1384
+ P + ++L+ + +++ ++ A L
Sbjct: 92 CTLRFFETNPAALIKVLELCK-------------VIVELIRDTETPMSQEEVSAFVPYLL 138
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444
+ R L + +G ++M P+LL A + R
Sbjct: 139 LKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVI 191
Query: 1445 RAMMSQ--LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
++ +S V ++ + DK + +++ +L A Q+ + ++
Sbjct: 192 EYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
Query: 1503 KLTEVL 1508
K ++
Sbjct: 252 KDKSLV 257
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 1e-13
Identities = 63/385 (16%), Positives = 143/385 (37%), Gaps = 37/385 (9%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRA 1710
++ +++L L ++ S A+Q ++ + A + + ++P ++ N ++ +
Sbjct: 85 ANARREVKNYVLQTLGTETYR--PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS 142
Query: 1711 SV--RDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENES--VRDAALGAGHVLV 1765
+ ++ L Y+ + + Q Q+ ++L AI+ G+ E S V+ AA A +
Sbjct: 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202
Query: 1766 EHYATTSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--------VAGTSGK 1812
E ++ V + + R+R ++++ L ++ +
Sbjct: 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262
Query: 1813 ALLEG-GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+E SD + + + IE E+ A+ + +
Sbjct: 263 ITIEAMKSDIDEVALQG-----IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK----- 312
Query: 1872 VANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928
L+ ++P+L TL + AG L L + ++P ++P +
Sbjct: 313 -FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
+K+P R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 1989 FSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + AI D + LL L
Sbjct: 432 VGRICELLPEAAINDVYLAPLLQCL 456
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 5e-12
Identities = 69/475 (14%), Positives = 147/475 (30%), Gaps = 38/475 (8%)
Query: 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 2131
L TIL +S D A++ E + + L L N R +
Sbjct: 3 LITILEKTVSP----DRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVA 56
Query: 2132 SAYLI------------GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ I + + + + + ++ L +A+
Sbjct: 57 AGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 116
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPI 2233
A +P P I + ++ E K+ + I L +L
Sbjct: 117 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176
Query: 2234 FLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
+QG+ S ++ A L +E T KE ++ +V+ A
Sbjct: 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236
Query: 2292 ILSTLSIIIRKGGIALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 2350
L L I+ ++ ++ L I+ ++ V + +
Sbjct: 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296
Query: 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 2410
+ + + + AL+ ++ + + + + DD + +
Sbjct: 297 ASEAAEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKA 347
Query: 2411 AASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF 2470
A L +++ C ED + +L + +P W R +V+ F L P + PL
Sbjct: 348 AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKPLV 406
Query: 2471 LSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 2525
+ + L +KD +R+ + +GR + + N + +L ++ L
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGR-ICELLPEAAINDVYLAPLLQCLIEGL 460
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-07
Identities = 79/457 (17%), Positives = 140/457 (30%), Gaps = 74/457 (16%)
Query: 1958 QLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
L E +PT L + R +AGL S + L
Sbjct: 24 FLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83
Query: 2012 LEDDQTS--DTALDGLKQILSVRTTAVL---------------PHILPKLVHLPLS---- 2050
+ + + L L ++A P ++P+LV +
Sbjct: 84 DANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 143
Query: 2051 -AFNAHALGALA----EVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AE 2099
L A+ ++ L IL A++ M ++ +V+ A A E
Sbjct: 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAY--LIGYFYKNSKLYLVDEAPNMIST 2157
D+E + +++ + R +A L+ + P + +
Sbjct: 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
I + E S V + AI S E+ + P
Sbjct: 264 TIEAMKSDIDEVALQGIEFWSNVCDEE-----------MDLAIEASEAAEQGRP---PEH 309
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQ-------AALGLGELIEVTSEQSLKEFVI 2270
F ALQ L+PI Q L + A + L L + ++
Sbjct: 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IV 364
Query: 2271 PITGPLI-RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
P P I I + +A+++ I+ LKP + Q T I+ ++D + V
Sbjct: 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424
Query: 2330 RSSAALALGKLSAL-------STRVDPLVGDLLSSLQ 2359
R +AA +G++ L + PL+ L+ L
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 7e-07
Identities = 55/452 (12%), Positives = 126/452 (27%), Gaps = 95/452 (21%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLK------------EIMPVLMNTLISSLASSS 1898
+ S R AA K + + +K + N ++ +L + +
Sbjct: 44 LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET 103
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS--RRQGVCIGLSEVMASAGK 1956
+ G ++ P +IP L + +P+++ ++ + +
Sbjct: 104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163
Query: 1957 SQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL-- 2012
QL +E++ I + V+ +A A + E + +
Sbjct: 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223
Query: 2013 -----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH-------ALGAL 2060
D + AL L +I+S+ + ++ P L + + A + +
Sbjct: 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283
Query: 2061 AEVAGPGL------------------------NFHLGTILPALLSAMGDDDMD------- 2089
+ V + L ++P L + D +
Sbjct: 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Query: 2090 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SKLYLV 2148
A + +++ V ++ + + + + R ++ G + L
Sbjct: 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208
+ TLI L+ D A + R+ +P+
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN------------------ 445
Query: 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQGLIS 2240
L PLL ++GL +
Sbjct: 446 ---------------DVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 60/490 (12%), Positives = 145/490 (29%), Gaps = 81/490 (16%)
Query: 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364
+L+ +P A L ++ + PT + L L R AA
Sbjct: 6 ILEKTVSPDRLELEAAQKFLE---RAAVENLPTFLVELSRVLANPGNSQVARVAA----- 57
Query: 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424
++ L ++ + + ++ + ++
Sbjct: 58 ---------------GLQIKNSLTSKDPDIKAQYQ--------QRWLAIDANARREVKNY 94
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L + A++C A +++ ++P L+ + + K+S+++ +
Sbjct: 95 VLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154
Query: 1483 G-AMAYCAPQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIK-NPEIASL 1538
G P+QL +I+ + + + P V+ A AL K N + S
Sbjct: 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD------APSLALLV-PIVHRGLRERSAE 1591
++ + + + + V + + + I ++ E
Sbjct: 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIP---------------YIGLLLPEVKKVLVDPIPE-- 1634
+ + N+C + Y L + +L + +
Sbjct: 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334
Query: 1635 ---------VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
A + L ++ P ++ ++ + +K+ + R A +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCI 393
Query: 1686 LAALGTVYFEH----ILPDIIRNCSHQRASVRDGYL----TLFKYLPRSLGVQFQNYLQQ 1737
L + +P +I VRD + + LP + YL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--AINDVYLAP 451
Query: 1738 VLPAILDGLA 1747
+L +++GL+
Sbjct: 452 LLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 45/322 (13%)
Query: 1391 NSAKRREGALLAFECLCEKL-GRLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDT--------------------HPKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ A G + P + P + +P + +++ DP VR AA +G + +
Sbjct: 382 YRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKS 1668
E L+ L++ L +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLSA 462
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 1e-13
Identities = 46/282 (16%), Positives = 86/282 (30%), Gaps = 35/282 (12%)
Query: 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 2369
F P + + L R + A L L V + S + + E
Sbjct: 59 FTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQF 118
Query: 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---Q 2426
A +R + L+ + + + A S I +++
Sbjct: 119 NVQ-------APSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIEN 171
Query: 2427 LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILD-RLKSSLKDEK 2485
+ D +++ + S W RHG+ L FA + + S L ++ L +K
Sbjct: 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDK 231
Query: 2486 F----------PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRR 2535
F P+R+A+ L R+ + DI+ +V L +V+
Sbjct: 232 FNDFVDDRTVAPVRDAAAYLLSRIYPLIGPN---------DIIEQLVGFLDSGDWQVQFS 282
Query: 2536 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L AL + + L L ++L +
Sbjct: 283 GLIALGYLK-----EFVEDKDGLCRKLVSLLSSPDEDIKLLS 319
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-05
Identities = 64/436 (14%), Positives = 125/436 (28%), Gaps = 69/436 (15%)
Query: 2093 LAKEAAETVTLVIDEEGVES--LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL--- 2147
L + + I E + ++ + + + + RR+ A ++ KL
Sbjct: 41 LKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFK 100
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207
++ + L + + + + + V+ +++ I + +
Sbjct: 101 IEYKESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIK 160
Query: 2208 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267
R K PI + + L+S R A L + +
Sbjct: 161 RHKVDERPI--------ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ 212
Query: 2268 FVIP--ITGPLIRIIG-DRF----------PWQVKSAILSTLSIIIRKGGIALKPFLPQL 2314
+ + + I+ D+F P V+ A LS I I + QL
Sbjct: 213 IRVDSKLFSKIYEILVTDKFNDFVDDRTVAP--VRDAAAYLLSRIYPL--IGPNDIIEQL 268
Query: 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALK 2374
L V+ S +ALG L D L L+S L D I+ L
Sbjct: 269 VGF----LDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLC 324
Query: 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434
+ V + ++ + VS S L ++++ + + E
Sbjct: 325 HFP-------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPELSIPPER 376
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS----------LKDE 2484
L + S L+++ L L +E
Sbjct: 377 LK---------------DIFPCFTSPVPEVRTS--ILNMVKNLSEESIDFLVAEVVLIEE 419
Query: 2485 KFPLREASTKALGRLL 2500
K +RE + K L +
Sbjct: 420 KDEIREMAIKLLKKRR 435
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-04
Identities = 56/458 (12%), Positives = 127/458 (27%), Gaps = 89/458 (19%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTK 1554
P I+ + +L + + G L+ + K + + L+ +
Sbjct: 60 TPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFN 119
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
+ + + A + + + + K ++ V +
Sbjct: 120 VQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLD----- 174
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKS 1668
++ L+ R A A ++ + L S + + L +
Sbjct: 175 -----FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVT 229
Query: 1669 DNSN----------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718
D N V R AA LS + +G I+ ++ V+ L
Sbjct: 230 DKFNDFVDDRTVAPV-RDAAAYLLSRIYPLIGP---NDIIEQLVGFLDSGDWQVQFSGLI 285
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
YL +F + ++ L+ +E ++ + L T SL L+L
Sbjct: 286 ALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL---LCHFPITDSLDLVLE 337
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
W + + + S ++ + ++
Sbjct: 338 KC--------W-------KNIESE-----------------ELISVSKTSNLSLLTKIYR 365
Query: 1839 RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS- 1893
+ E L ++ + VR + L +K + ++ L++
Sbjct: 366 ENPELSIPPERLKDIFPCFTSPVPEVRTSIL-----------NMVKNLSEESIDFLVAEV 414
Query: 1894 -LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930
L E R++A + L + +L + I
Sbjct: 415 VLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGS 452
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 48/230 (20%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 25 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 78
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR SAA LG + D + + L + L
Sbjct: 79 DE----------RAVEPLIKALKDEDGWVRQSAAVALG----QIGDERAVEPLIKALK-- 122
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 123 -DEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 169
Query: 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548
+ G + A++ + R+ A++ L++ N
Sbjct: 170 I------GGER-------VRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 48/239 (20%), Positives = 78/239 (32%), Gaps = 54/239 (22%)
Query: 2342 ALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400
A R DP V + +LQ +R A AL G + R L +
Sbjct: 11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------RAVEPLIKAL 59
Query: 2401 YHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHN 2460
+D VR +AA LG + ++ L+ R + + +
Sbjct: 60 KDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAVALGQI--GD 110
Query: 2461 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 2520
A+ + L +LKDE + +R A+ ALG + V+ L
Sbjct: 111 ERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GDERAVEPL-- 148
Query: 2521 VVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+ AL D+ VR+ A AL + A+ + + G+ R A
Sbjct: 149 -IKALKDEDGWVRQSAADALGEIG--GERVR--------AAMEKLAETGTGFARKVAVN 196
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 54/232 (23%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + + + D VR AA L G + + L+K L+D+ ++++
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKDEDAWVRRAAA 71
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539
LG + + V L + L D V+ + AL Q+G V
Sbjct: 72 DALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAV 114
Query: 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKK 1594
L+ L D + + + A +L + V + + L++ ++
Sbjct: 115 EPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
AA +G + ++K+ R VA + +
Sbjct: 162 SAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 46/213 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
P+ ++ + + L S +R AA LG++ E++++ PLI+ + D
Sbjct: 18 PEKVEMYI----KNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDE 62
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W V+ A L G I + + L IK L+D VR SAA+ALG++
Sbjct: 63 DAW-VRRAAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI--- 108
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
+ V L+ +L+ D +R A AL G + R L + +
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDE 155
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
D VR SAA LG + ++ +++L
Sbjct: 156 DGWVRQSAADALG----EIGGERVRAAMEKLAE 184
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 48/231 (20%)
Query: 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRG 1357
V+ + L S V+RA + L + DE L+ L D + RR
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRA 69
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
AA L + L + L D + R+ A +A LG++ +
Sbjct: 70 AADALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE- 111
Query: 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS
Sbjct: 112 --RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQS 162
Query: 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528
+ LG + ++ + ++ + L+ S
Sbjct: 163 AADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAA 70
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+ LG + + A + L++ D++G ++ LG+ + L D
Sbjct: 71 ADALGQIGDERA---VEPLIKALKDEDGWVR----QSAAVALGQIGDERAVEPLIKALKD 123
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
VR AA L EI + LI +L RQ A ALG
Sbjct: 124 EDWFVRIAAAFA-----------LGEIGDERAVEPLIKALKDEDGWVRQSAADALG---- 168
Query: 1915 KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
++G + + + + + R+ L
Sbjct: 169 EIGG---ERVRAAMEKLAETGTGFARKVAVNYLET 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
++ + ++ L DE+ VR AA A L + ++ L+ A++D ++ +RQS+
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADA---LGQIGDERAVEPLIKALKD----EDGWVRQSA 101
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
LG + + A L+ +D A LG + L D
Sbjct: 102 AVALGQIGDERAVEPLIKALK--DEDWFVRIAA-----AFALGEIGDERAVEPLIKALKD 154
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGEL 1912
VRQ+A L EI + + + + R+VA L
Sbjct: 155 EDGWVRQSAA-----------DALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 38/226 (16%)
Query: 1914 RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
R P + + + L+D S R+ L ++ + + + A
Sbjct: 10 AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKA 58
Query: 1974 LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSV 2031
L D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 59 LKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI--- 108
Query: 2032 RTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQ 2091
+ ++ L A AL E+ + L+ A+ D+D V+
Sbjct: 109 GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWVR 160
Query: 2092 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
A +A + E G E + + + K R+ + +
Sbjct: 161 QSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 199
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 33/134 (24%)
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
A H A LR +P + + +L+D+ + +R A+ ALG++
Sbjct: 1 AWSHPQFEKAAAPLRADPEKV----------EMYIKNLQDDSYYVRRAAAYALGKI---- 46
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563
V+ L + AL D+ + VRR A AL + + A+ L
Sbjct: 47 ------GDERAVEPL---IKALKDEDAWVRRAAADALGQI--GDERAV--------EPLI 87
Query: 2564 ECLKDGSTPVRLAA 2577
+ LKD VR +A
Sbjct: 88 KALKDEDGWVRQSA 101
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 45/193 (23%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 70
Query: 1558 DILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612
A +L + V + + L++ ++ AA +G +
Sbjct: 71 -------------ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113
Query: 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672
+ + K L D VR AA A+G + V L+ ALK ++
Sbjct: 114 --------VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGW 158
Query: 1673 VERSGAAQGLSEV 1685
V R AA L E+
Sbjct: 159 V-RQSAADALGEI 170
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 30/187 (16%)
Query: 1996 AGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 2053
A ++A E V + L+DD A L +I + ++ L +
Sbjct: 12 APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI---GDERAVEPLIKALKD-EDAWVR 67
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
A AL ++ + L+ A+ D+D V+ + AA + + DE VE L
Sbjct: 68 RAAADALGQIGDE-------RAVEPLIKALKDEDGWVR---QSAAVALGQIGDERAVEPL 117
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L D +R ++A+ +G + LI L D D +A
Sbjct: 118 IKAL----KDEDWFVRIAAAFALGEI----------GDERAVEPLIKALKDEDGWVRQSA 163
Query: 2174 WEALSRV 2180
+AL +
Sbjct: 164 ADALGEI 170
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 46/248 (18%), Positives = 78/248 (31%), Gaps = 60/248 (24%)
Query: 2333 AALALGKLSALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+ + DP V + +LQ +R A AL G + R
Sbjct: 3 GSHHHHHHT------DPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------R 45
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 2451
L + +D VR +AA LG + ++ L+ R + +
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511
+ A+ + L +LKDE + +R A+ ALG +
Sbjct: 99 ALGQI--GDERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GD 136
Query: 2512 TVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGST 2571
V+ L + AL D+ VR+ A AL + A+ + + G+
Sbjct: 137 ERAVEPL---IKALKDEDGWVRQSAADALGEI--GGERVR--------AAMEKLAETGTG 183
Query: 2572 PVRLAAER 2579
R A
Sbjct: 184 FARKVAVN 191
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 48/222 (21%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 20 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 73
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR SAA LG + D + + L + L
Sbjct: 74 DE----------RAVEPLIKALKDEDGWVRQSAAVALGQIG----DERAVEPLIKALK-- 117
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 118 -DEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 164
Query: 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 2540
+ G + A++ + R+ A++ L
Sbjct: 165 I------GGER-------VRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 57/242 (23%)
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED 1469
+P + + + + D VR AA L G + + L+K L+D
Sbjct: 7 HHHHTDP---EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKD 56
Query: 1470 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529
+ ++++ LG + + V L + L D V+ + AL Q+G
Sbjct: 57 EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD- 105
Query: 1530 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRG 1584
V L+ L D + + + A +L + V + +
Sbjct: 106 ------ERAVEPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKA 146
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644
L++ ++ AA +G + ++K+ R VA +
Sbjct: 147 LKDEDGWVRQSAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLE 194
Query: 1645 SL 1646
+
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 35/181 (19%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK L+D VR +AA ALG++ + V L+ +L+ D +R++ AL G +
Sbjct: 51 IKALKDEDAWVRRAAADALGQIGD-----ERAVEPLIKALKDEDGWVRQSAAVAL-GQIG 104
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR++AA LG + ++ L+
Sbjct: 105 DE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKAL 147
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
R + ++ + R+ + L
Sbjct: 148 KDEDGWVRQSAADALGEI--GGERVR----------AAMEKLAETGTGFARKVAVNYLET 195
Query: 2499 L 2499
Sbjct: 196 H 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 49/224 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
P+ ++ + + L S +R AA LG++ E++++ PLI+ + D
Sbjct: 13 PEKVEMYI----KNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDE 57
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W V+ A L G I + + L IK L+D VR SAA+ALG++
Sbjct: 58 DAW-VRRAAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI--- 103
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
+ V L+ +L+ D +R A AL G + R L + +
Sbjct: 104 --GDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDE 150
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 2447
D VR SAA LG + ++ +++L + + AR
Sbjct: 151 DGWVRQSAADALG----EIGGERVRAAMEKLAE---TGTGFARK 187
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 48/231 (20%)
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRGAA 1359
V+ + L S V+RA + L + DE L+ L D + RR AA
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRAAA 66
Query: 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419
L + L + L D + R+ A +A LG++ +
Sbjct: 67 DALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE--- 106
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS+
Sbjct: 107 RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQSAA 159
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
LG + ++ + ++ + L+ S+I
Sbjct: 160 DALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 33/214 (15%)
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1796
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAAA 66
Query: 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856
+ LG + + A L+ +D ++ LG+ + L D
Sbjct: 67 DALGQIGDERAVEPLIKALK--DEDGWVR-----QSAAVALGQIGDERAVEPLIKALKDE 119
Query: 1857 SLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
VR AA L EI + LI +L RQ A ALGE
Sbjct: 120 DWFVRIAAA-----------FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE---- 164
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
+G + + + + + R+ L
Sbjct: 165 IGG---ERVRAAMEKLAETGTGFARKVAVNYLET 195
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 32/182 (17%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+ + K L D VR AA A+G + V L+ ALK ++ V R AA
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWV-RQSAAV 98
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
ALG + E + +I+ + VR +LG + + ++ +
Sbjct: 99 -------ALGQIGDERAVEPLIKALKDEDWFVRIAAA-------FALG-EIGD--ERAVE 141
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L DE+ VR +A A L E + E R+ +V L
Sbjct: 142 PLIKALKDEDGWVRQSAADA---LGEIGGERVRAAMEKLAET----GTGFARKVAVNYLE 194
Query: 1801 DL 1802
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 54/289 (18%), Positives = 87/289 (30%), Gaps = 91/289 (31%)
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115
P + + + DD V+ AA + + DE VE L+
Sbjct: 3 GSHHHHHHTDPE-------KVEMYIKNLQDDSYYVRR---AAAYALGKIGDERAVEPLIK 52
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
L D A +RR++A +G + LI L D D +A
Sbjct: 53 AL----KDEDAWVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235
AL + I D +A++PL+
Sbjct: 99 ALGQ----------------IGD-------------------------ERAVEPLIKA-- 115
Query: 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295
L +R AA LGE+ E++++ PLI+ + D V+ +
Sbjct: 116 --LKDEDWFVRIAAAFALGEI---GDERAVE--------PLIKALKDE-DGWVRQSAADA 161
Query: 2296 LSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
L I GG ++ + K + T R A L +L
Sbjct: 162 LGEI---GGERVRAAM-------EKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 41/232 (17%)
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
+ H H + + + ++D D++ +R+++ LG + + A + L++
Sbjct: 1 MRGSHHHHHHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGDERAV---EPLIKA 53
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
D++ RA + LG+ + L D VRQ+A
Sbjct: 54 LKDEDAWVR----RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA-----------V 98
Query: 1878 TLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936
L +I + LI +L R A ALGE+ G+ + L + LKD
Sbjct: 99 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---ERAVEPLIKALKDED 151
Query: 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
RQ L E+ + + + R+ A
Sbjct: 152 GWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 38/227 (16%)
Query: 1913 VRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972
P + + + L+D S R+ L ++ + + +
Sbjct: 4 SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIK 52
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILS 2030
AL D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 53 ALKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI-- 103
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDV 2090
+ ++ L A AL E+ + L+ A+ D+D V
Sbjct: 104 -GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWV 154
Query: 2091 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
+ A +A + E G E + + + K R+ + +
Sbjct: 155 RQSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT-KYS 1556
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 65
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
D L D ++ L+ + L++ ++ AA +G +
Sbjct: 66 ADAL-----GQIGDERAVEPLI----KALKDEDGWVRQSAAVALGQIGDERA-------- 108
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676
+ + K L D VR AA A+G + V L+ ALK ++ V R
Sbjct: 109 ----VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGWV-RQ 156
Query: 1677 GAAQGLSEV 1685
AA L E+
Sbjct: 157 SAADALGEI 165
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 1e-11
Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 20/223 (8%)
Query: 2331 SSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390
SS + G A T + + I K + A S
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGE 70
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSV 2450
+ + D VR+ A + G +S+ L+ ++ +W +
Sbjct: 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYLSK-----DKEILIFMRDEVSKDNNWRVQEVLA 125
Query: 2451 LVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPAN 2510
F F + + L + LK R A+T+ L N
Sbjct: 126 KAFDEFCKK--------IEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKEN 175
Query: 2511 TTVVVDILASVVSALHDDSSE-VRRRALSALKSVAKANPSAIM 2552
+ +A L +D SE VR+ +AL+ ++K P +
Sbjct: 176 PNEAIRRIA----DLKEDVSEYVRKSVGNALRDISKKFPDLVK 214
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 4e-11
Identities = 83/697 (11%), Positives = 227/697 (32%), Gaps = 85/697 (12%)
Query: 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALG 1690
E+ + AI + I + + + + L+ + + ++ + + +
Sbjct: 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312
Query: 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI-LDGLADE 1749
E+ ++ H + F + ++ + G
Sbjct: 313 VALGENHSRALLDQVEHWQ--------------------SFLALVNMIMFCTGIPGHYPV 352
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
NE+ L + L + +L + R +L+ LL K
Sbjct: 353 NETTSSLTLTFWYTLQDD--------ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFP 404
Query: 1810 SGKALLEGGSDDEGASTEAHGR------AIIEVLGRDKRNEVLA----ALYMVRSDVSLS 1859
S + SD++ + E+LG + + + L S
Sbjct: 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQ 464
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
+A L+ +++I +++P L+ LI ++ S+ + +G L L +
Sbjct: 465 HTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH 523
Query: 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
++ S++P++ L +P S + + + K L + ++ + L
Sbjct: 524 PVMINSVLPLVLHALGNPELSVSSVSTL---KKICRECKYDLPPYAANIVAVSQDVLMKQ 580
Query: 1978 I------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE---DDQTSDTALDGLKQI 2028
I + + ++ G S L ++ + ++ + LE ++ + + + I
Sbjct: 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI 640
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
L + + + + + ++ +LS +D
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700
Query: 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148
V+++ ++V ++D+ +V +L + +G ++I ++
Sbjct: 701 VVEAVCAIFEKSVKTLLDD--FAPMVPQLCEMLGRMYSTIPQA----------------- 741
Query: 2149 DEAPNMISTLIVLLSDSDST--TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
A ++ L+ + + + + A + ++ V ++ ++ + ++ +
Sbjct: 742 -SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800
Query: 2207 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSL 2265
+RK P L C ++ + + L A + + EL+ E +S+
Sbjct: 801 LKRK----PDLF--LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESV 854
Query: 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302
+ V L+ + + Q +++ + I+
Sbjct: 855 GKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFA 891
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 22/222 (9%), Positives = 75/222 (33%), Gaps = 14/222 (6%)
Query: 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLPKIVPKLTEVLT-DTHPKVQ 1516
+ + W+ + +++ ++L SQ ++ ++ D + +
Sbjct: 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78
Query: 1517 SAGQTALQQVGSVIKNPEIAS-----LVPTLLMGLTDPNDHTKYSLDILLQTTFVN---T 1568
+ +++ + +K P + + LL + ++ L T
Sbjct: 79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKK 1626
+ ++ + ++ ++ + + + Q+ + + ++P V +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198
Query: 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
++ D P +R++ + LI+ G F + L + +
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 18/177 (10%)
Query: 1620 LLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNV 1673
LL ++ D + ++AA+++ + + F + + LLD K +V
Sbjct: 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSV 120
Query: 1674 ERSGAAQGLSEVL----AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL----PR 1725
+ L + + E +L DI+ + H+ +R LF
Sbjct: 121 -IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ +V+P ++ + D ++R + + + +E
Sbjct: 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES---FAILIKIFGMNTFVKTLEH 233
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 1343 LDQLMKSDKYGERRGA----AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ + S K+ +R A + K +S + + + +
Sbjct: 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80
Query: 1399 ALLAFECLCEKLGR--LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456
A + E +C+KL + YV + LL ++ +V EA A +
Sbjct: 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140
Query: 1457 KL----VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----QCLPKIVPKLTEVL 1508
+L +L+ ++ K + + QL A S ++VP + +++
Sbjct: 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 1509 TDTHPKVQSAGQTAL 1523
DT P +++ G +
Sbjct: 201 NDTQPAIRTIGFESF 215
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 11/199 (5%)
Query: 2424 DGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLK 2482
++LL + + + A + + + L K
Sbjct: 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTK 114
Query: 2483 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS---- 2538
++K + EA KAL L + + A++ D+L ++ + + ++R
Sbjct: 115 EKKPSVIEAIRKAL--LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172
Query: 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQ 2598
++K + P + + + D +R ++ G
Sbjct: 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF-GMNTF---V 228
Query: 2599 KFITGLDARRLSKFPEHSD 2617
K + LD + K E
Sbjct: 229 KTLEHLDNLKRKKIEETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+++ D ++ A + I K+ + ++ L+ + +A
Sbjct: 68 IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKA 127
Query: 1909 LGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLS 1961
L + + ++ + +K + R + M +
Sbjct: 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187
Query: 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008
DE++P + + D+ +R +F+ L K GM + + L
Sbjct: 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-10
Identities = 65/328 (19%), Positives = 111/328 (33%), Gaps = 28/328 (8%)
Query: 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR----R 1940
+M + +SS + + LG + G + I+
Sbjct: 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454
Query: 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF-KSAGMQ 1999
G +G+ G + + S E+ ++ L + E+A L + +
Sbjct: 455 HGASLGI-------GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507
Query: 2000 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL-PLSAFNAHALG 2058
AI ++ + T A+ GL I R I L L +
Sbjct: 508 AIHDMFTYSQETQHGNITRGLAV-GLALINYGRQELADDLITKMLASDESLLRYGGAFTI 566
Query: 2059 ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118
ALA AG G N + L A+ D + DV+ A A V L+ D V +V L
Sbjct: 567 ALAY-AGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFV-LLRDYTTVPRIVQLLS 621
Query: 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
K + A +R +A+ +G L + I L L D AA ALS
Sbjct: 622 K---SHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALS 672
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSRDK 2206
++ +++ P + ++ +S +K
Sbjct: 673 MILIQQTEKLNPQVADINKNFLSVITNK 700
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-07
Identities = 70/424 (16%), Positives = 130/424 (30%), Gaps = 75/424 (17%)
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168
S + L +G Q + ++ +G +K + + E +++ + S
Sbjct: 355 TDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGN----LLEGKKVMAPYLPGSRASSRF 410
Query: 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF-CLPKAL 2227
+ L + A ++ +I + TS D++ G L G + A
Sbjct: 411 IKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470
Query: 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 2287
+ + L + SA E AALG+G L + + + + +
Sbjct: 471 IEVYEALKEVLYNDSATSGEAAALGMG-LCMLGTGKP------EAIHDMFTYSQET---- 519
Query: 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSA-ALALGKLSALSTR 2346
R A LAL
Sbjct: 520 ------------------------------------QHGNITRGLAVGLALINYGR-QEL 542
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
D L+ +L ++ +R + L +AG +SAVK +L V +D
Sbjct: 543 ADDLITKML---ASDESLLRYGGAFTI--ALAYAGTGNNSAVK----RLLHVAVSDSNDD 593
Query: 2407 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
VR +A LG + + + + L+ S + R G+
Sbjct: 594 VRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--- 646
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
S +D L KD +R+A+ AL +L+ Q + + SV++ H
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701
Query: 2527 DDSS 2530
+
Sbjct: 702 QEGL 705
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-06
Identities = 53/374 (14%), Positives = 101/374 (27%), Gaps = 52/374 (13%)
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
G ++ LP L + A LG + + + K P +
Sbjct: 353 GTTDNSFIKANLPW----LGKAQNWAKFTATASLGVIHKGNLLEGKKVMA-----PYLPG 403
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
+ ++ I G + + + A+L +G
Sbjct: 404 SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG- 462
Query: 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399
L+A+ + + L L A EA + G+ + + YS
Sbjct: 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGM-GLCMLGTGKPEAIHDMFTYSQETQ- 520
Query: 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRH 2459
+ R A + I E AD L + + +S R+G A
Sbjct: 521 ---HGNITRGLAVGLALINYGRQEL---ADDL--ITKMLASDESLLRYGGAFTIALAYAG 572
Query: 2460 NPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALG-----------RLLLHQIQSGP 2508
+ ++ L ++ D +R A+ ALG R++ +S
Sbjct: 573 TGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHN 625
Query: 2509 ANTTVVV--------------DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
A+ + + D VR+ A+ AL + +
Sbjct: 626 AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685
Query: 2555 VALFGPALAECLKD 2568
VA + +
Sbjct: 686 VADINKNFLSVITN 699
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 4e-10
Identities = 76/480 (15%), Positives = 160/480 (33%), Gaps = 99/480 (20%)
Query: 2092 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151
++ A+ + + GV + S++++ + + S+ +DE
Sbjct: 2 AMGFHEAQINNMEMAPGGV--ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEV 59
Query: 2152 ---PNMISTLIVLLSDSDSTTV--AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
P +++ + L ++ T+ +AW L+ + + +++ A
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAW-VLTNIASG-----NSLQTRIVIQA------- 106
Query: 2207 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-- 2264
+PIF++ L S +++EQA LG + ++
Sbjct: 107 ----------------------GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 2265 -LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG-----IALKPFLPQLQTTF 2318
L ++P PL+++ + + + LS + R + P L L
Sbjct: 145 VLDCNILP---PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL---- 197
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
L S V + A AL LS +A++ A GV +
Sbjct: 198 SWLLFVSDTDVLADACWALSYLSD------------------GPNDKIQAVIDA--GVCR 237
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 2434
L +L+ H+D V A +G + + LQ L
Sbjct: 238 R----------------LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTK 2494
L+L SSP + + + + N + I + + +I L S L+ +F R+ +
Sbjct: 282 LHLLSSPKESIKKEACWTISNITAGNRAQI-QTVIDANIFPALISILQTAEFRTRKEAAW 340
Query: 2495 ALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
A+ V + + + L S++ + AL+ L+++ + +
Sbjct: 341 AITNATSGGSAE-QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-08
Identities = 65/422 (15%), Positives = 130/422 (30%), Gaps = 73/422 (17%)
Query: 2058 GALAEVAGPGLNF---HLGTILPALLSAMGDDDMDVQSLA---------KEAAETVTLVI 2105
GA+ N G I ++ + + Q A KE + VI
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 2106 DEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLL 2162
G V V L + +++ SA+++ + + +V +A + I LL
Sbjct: 61 STPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELL 116
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQ-----------------PSYIKVIRDAIST--- 2202
S A AL + + + + R+A+
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176
Query: 2203 -SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261
R K + + P L + L ++ A L L + +
Sbjct: 177 LCRGKSPPPEFA------------KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224
Query: 2262 EQSLKEFVI--PITGPLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQL 2314
++ + VI + L+ ++ +V S L + I+ + I L L
Sbjct: 225 DK--IQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREA 2368
+ L +++ A + ++A + V D L+S LQ ++ R+
Sbjct: 282 ----LHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337
Query: 2369 ILTALKGVLKHAG-KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
A+ + + V++ L DL+ D + A + L + + E
Sbjct: 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397
Query: 2428 AD 2429
+
Sbjct: 398 RN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 68/464 (14%), Positives = 147/464 (31%), Gaps = 98/464 (21%)
Query: 2004 IVPTLLHALEDDQTSD--TALDGLKQILS------VRTTAVLPHILPKLVHLPLSAFNAH 2055
I ++ + +A +++LS + P ++ + V N
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 2056 ----ALGALAEVAGPGLNFHL----GTILPALLSAMGDDDMDVQ--------SLAKEAAE 2099
+ L +A +P + + + DVQ ++A ++
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMIST 2157
V+D + L+ K N+ ++ R++ + + K+ +P ++
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAKVSP-CLNV 196
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
L LL SD+ +A A ALS + + I+ + DA
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLS-----DGPNDKIQAVIDA------------------ 233
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITG 2274
+ ++ L+ ++ A +G ++ Q+ L +
Sbjct: 234 -----------GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ--- 279
Query: 2275 PLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
L+ ++ K A T+S I + + P L I LQ +
Sbjct: 280 SLLHLLSSPKESIKKEACW-TISNITAGNRAQIQTVIDANIFPAL----ISILQTAEFRT 334
Query: 2330 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382
R AA A+ ++ + + L L V D+ I + L L+ +L+ +
Sbjct: 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394
Query: 2383 -SVSSAVKIRVYSV----------LKDLVYHDDDHVRVSAASIL 2415
+ + I Y ++ L H++ + A ++
Sbjct: 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 6e-06
Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 30/280 (10%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDP----------LVGDLLSSLQVSD-AGIRE 2367
I+ + + + SA KL LS +P +V + L+ + ++
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKL--LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF 83
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
L + ++ + +L+ + + V+ A LG ++ +
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 2428 ----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSS 2480
++L LL L S +V + R + + L++L L
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL--- 200
Query: 2481 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALS 2538
L + + AL L V+D + +V L + +V AL
Sbjct: 201 LFVSDTDVLADACWALSYLSDGP----NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 2539 ALKSVAKANPSAIMVHVALFG-PALAECLKDGSTPVRLAA 2577
A+ ++ + V + +L L ++ A
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-05
Identities = 69/397 (17%), Positives = 143/397 (36%), Gaps = 40/397 (10%)
Query: 1285 GALAKHLAKDD----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT--- 1337
GA+ H A+ + + +++++ + S Q + + L+ S + P
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLL-SKEPNPPIDEV 59
Query: 1338 -----LVSRLLDQLMKSDKYGERRGAAFGLAGVVKG--FGISSLKKYGIAATLREGLADR 1390
+V+R ++ L + + + +A+ L + G + + G E L
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSS 118
Query: 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---- 1443
+E A+ A + + YV+ + PLL + + + A A
Sbjct: 119 EFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
Query: 1444 ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVP 1502
R V L L L + L ++ ++ + +
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-K 1554
+L E+L KV S AL+ VG+++ +I S + +LL L+ P + K
Sbjct: 238 RLVELLMHNDYKVVSP---ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 1555 YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT-EPK 1611
+ + T N + A + P + L+ T+K+AA + N S + E
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
+ +G + P + +L ++ VA + +++R
Sbjct: 355 KYLVELGCIKP-LCDLLTVMDSKIVQVALNGLENILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 29/303 (9%)
Query: 1483 GAMAYCAPQQLSQCLPK---IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL- 1538
GAM + Q + + I + E++ P+ Q + +++ S NP I +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 1539 -----VPTL--LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERS 1589
V + + S +L N++ + A VPI L
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ +++A +GN+ T +D + +L P ++ + A A+ +L RG
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-----------TVYFEHIL 1698
VS L+ L S + L++ AL V +
Sbjct: 181 KSPPPEFAKVSPCLNVL----SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-VLPAILDGLADENESVRDAA 1757
++ H V L + +Q Q L L ++L L+ ES++ A
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
Query: 1758 LGA 1760
Sbjct: 297 CWT 299
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 55/372 (14%), Positives = 108/372 (29%), Gaps = 35/372 (9%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQV-AGR 1907
M+ S A K + + E++ ++ + L + Q +
Sbjct: 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87
Query: 1908 ALGELVRKLGERVLP----SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963
L + + +PI L ++ L + + +
Sbjct: 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 1964 DELIPTIRTALC-DSILEVRESAGLAFSTLFKS----AGMQAIDEIVPTLLHALE--DDQ 2016
++P + + L + +A A S L + + + L L D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 2017 TSDTALDGLKQILSV---RTTAVLPH-ILPKLVHL---PLSAFNAHALGALAE-VAGPGL 2068
A L + + AV+ + +LV L + AL A+ V G +
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Query: 2069 NFHLGT---ILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 2117
+ L +LL + ++ ++ + VID +L+S L
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
+ + YLV+ I L LL+ DS V A L
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL--GCIKPLCDLLTVMDSKIVQVALNGL 385
Query: 2178 SRVVASVPKEVQ 2189
++ +E +
Sbjct: 386 ENILRLGEQEAK 397
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 9e-09
Identities = 53/408 (12%), Positives = 129/408 (31%), Gaps = 67/408 (16%)
Query: 2076 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
+ ++ + ++++ Q L++E + +I + VS L K + +
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCS 115
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNM-ISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
I+ SA+ + + I I LL+ + A AL +
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175
Query: 2186 K---------------------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224
++ +R+ T + R K P+
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL-------- 227
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI--PITGPLIRIIGD 2282
A++ +LP ++ L E+ + + L + +E+ E V+ + L++++G
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER--IEMVVKKGVVPQLVKLLGA 285
Query: 2283 RFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
+ + L + I+ + + L L + ++ A +
Sbjct: 286 TEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF----PSLLTNPKTNIQKEATWTM 340
Query: 2338 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAG-KSVSSAVKI 2390
++A V + L+ L +D ++ A+ + + V
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DGQLADLLQEL 2434
+ L +L+ D + + + Q E +L+ +++E
Sbjct: 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 448
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 53/380 (13%), Positives = 124/380 (32%), Gaps = 37/380 (9%)
Query: 2230 LLPIFLQGLI-SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288
L+P F+ L + + ++ ++A L + TSEQ+ I ++
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 2289 KSAI--LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
+ A+ L ++ ++ K G A+ P L L + L + L
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACG---YLRNLTWTLSN 216
Query: 2340 L------SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 2393
L + V+ ++ L+ L +D + A+ + + + VK V
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPSWAARHGS 2449
L L+ + + A +G + ++ A L +L ++P + +
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 2450 VLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509
+ I + ++ L L F ++ + A+
Sbjct: 337 TWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG---GTVE 392
Query: 2510 NTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKA-------NPSAIMVHVALFGP 2560
+V I+ +++ L +++ + L A+ ++ +A +IM+
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452
Query: 2561 ALAECLKDGSTPVRLAAERC 2580
+ + + V A+
Sbjct: 453 KIEALQRHENESVYKASLNL 472
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-08
Identities = 61/403 (15%), Positives = 120/403 (29%), Gaps = 58/403 (14%)
Query: 2076 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
LP + + DDM Q L++E + +VI V LV + + +
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPE 145
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA--AAWEALSRVVASV 2184
++ +A+ + + L + L + S V A W AL V
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW-ALGNVAGDS 204
Query: 2185 P----------------KEVQPSYIKVIRDAIST----SRDKERRKKKGGPILIPGFCLP 2224
+ +IR A T R K+ +
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD------------W 252
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ LP + + S E A + L + E + I L+ ++
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
V++ L + I+ + + + + L ++ A + ++A
Sbjct: 313 T-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 2344 STRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKS---VSSAVKIRVYS 2394
+T V D L+ L+V++ ++ A+ + + V
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 2395 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437
L DL+ D+ + L + + E + A L N
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 474
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 63/472 (13%), Positives = 149/472 (31%), Gaps = 106/472 (22%)
Query: 2000 AIDEIVPTLLHALEDDQTSD--TALDGLKQILSVRT-----TAVLPHILPKLVHLPLSAF 2052
+ + +P + L D + +A +QILS + ++P+LV
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 2053 NA----HALGALAEVAGPGLNFHLGTI-----LPALLSAMGDDDMDVQ--------SLAK 2095
A AL +A G + + +P + + ++V+ ++A
Sbjct: 144 PEMLQLEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202
Query: 2096 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPN 2153
++ + V+ +E ++ N+ S+ R++ + + K + +
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ- 257
Query: 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 2213
+ TL L+ D+ T+ A A+S + ++ +
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDG-------------------PQEAIQAVIDV 298
Query: 2214 GPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273
+ ++ L S ++ A +G ++ Q+ +
Sbjct: 299 R---------------IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 2274 GPLIRIIGDRFPWQVKSA--ILSTLS--------IIIRKGGIALKPFLPQLQTTFIKCLQ 2323
L ++ K A +S ++ +I I +K L+
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP----------LVKLLE 393
Query: 2324 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS---------LQVSDAGIREAILTALK 2374
+ + A A+ S+ + ++ L+S L+++D I E L AL+
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453
Query: 2375 GVLKHAGKSVSSAVKIRVYSV-----------LKDLVYHDDDHVRVSAASIL 2415
+LK + + + + +++D + A I+
Sbjct: 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 66/383 (17%), Positives = 143/383 (37%), Gaps = 32/383 (8%)
Query: 1293 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT-------LVSRLLDQ 1345
+ ++ + ++ LN+ Q + + ++ S + P +V RL++
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL-SREHRPPIDVVIQAGVVPRLVEF 138
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
+ ++ + AA+ L + G + + L + + + A+ A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ-AIWAL 197
Query: 1404 ECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---ARAMMSQLSAQGVK 1457
+ + YV+Q M P+L + S++ +R A R Q V
Sbjct: 198 GNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
LP+L K + T + + ++ + +I +L E+L+ VQ
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316
Query: 1517 SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTV 1569
+ A+ + V N A ++P L + L+ P ++ K + + T NT
Sbjct: 317 TPALRAVGNI--VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 1570 DAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVK 1625
++ A L+P + + L +TKK+A + N S + D+I Y+ + +
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR 1648
+L + V A+ ++++
Sbjct: 435 DLLEIADNRIIEVTLDALENILK 457
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 5e-04
Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 27/266 (10%)
Query: 1284 TGALAKHLAKDDPKV------HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
AL +A D ++ +L + N+ ++ R + LS L + + +
Sbjct: 194 IWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 1338 LVSR----LLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSLKKYGIAATLREGLADRN 1391
V L +L+ S A + ++ + G I ++ I L E L
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSHE 311
Query: 1392 SAKRREGALLAFECLC----EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447
S + AL A + + + V+ L LLL + + + +EA +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNIT 369
Query: 1448 MS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL----PKI 1500
Q+ A ++P L+K LE ++TK+ + + + Q+
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQV 1526
+ L ++L ++ AL+ +
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-04
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 2426 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 2485
QL L ++ +S + + + F L + ++ RL +++ +
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 2486 FP-LREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKS 2542
L+ + AL + A T VVVD + + L+ S EV+ +A+ AL +
Sbjct: 144 PEMLQLEAAWALTNIASGT----SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 2543 VAKANPS---AIMVHVALFGPALAECLKDGSTPVRLAA 2577
VA + ++ A+ + + A
Sbjct: 200 VAGDSTDYRDYVLQCNAM--EPILGLFNSNKPSLIRTA 235
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 55/354 (15%), Positives = 104/354 (29%), Gaps = 127/354 (35%)
Query: 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSS 2132
G+ LP + + DDM Q A S++L + ++ +
Sbjct: 11 GSELPQMTQQLNSDDMQEQ---LSATRKF-------------SQILSDGNEQIQAVIDAG 54
Query: 2133 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192
A + L+ LLS + + A ALS + + +++Q
Sbjct: 55 A---------------------LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--- 90
Query: 2193 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALG 2252
+ DA G LP +Q L S + ++ ++A
Sbjct: 91 --AVIDA-------------GA----------------LPALVQLLSSPNEQILQEALWA 119
Query: 2253 LGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312
L + +EQ + +I G + P L
Sbjct: 120 LSNIASGGNEQ--------------------------------IQAVIDAGAL---PAL- 143
Query: 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSD 2362
++ L + A AL +++ + LV LLSS +
Sbjct: 144 ------VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSS---PN 193
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416
I + L AL + + + + L+ L H+++ ++ A L
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 36/235 (15%)
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 2287
LP Q L S + + A +++ +EQ + +P L++++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 2288 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 2338 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+++ V D L+ L + I + L AL + + + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPS 2442
L L+ ++ + A L ++ + + A L++L L S +
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 40/212 (18%)
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 2287
LP +Q L S + + A L ++ +EQ + +P L++++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 2288 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 2338 GKLSALSTR----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387
+++ + LV LLSS + I + L AL + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALV-QLLSS---PNEQILQEALWALSNIASGGNEQKQAV 176
Query: 2388 VKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
+ L+ L H+++ ++ A L +
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 4e-06
Identities = 47/267 (17%), Positives = 81/267 (30%), Gaps = 33/267 (12%)
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 2279
+ + LQ ++ S LR A + L L K + + G L+
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN--KATLCSMKGCMRALVAQ 251
Query: 2280 IGDRFPWQVKSAI-----LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRT-VRSSA 2333
+ + LS + + K + + L ++C + + S
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKSV 307
Query: 2334 ALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367
Query: 2383 SVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQLA----DLLQELL 2435
+ +R + L+ L+ + +A L +S Q A + L
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427
Query: 2436 NLASSPSWAARHGSVLVFATFLRHNPS 2462
NL S GS + + P+
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 5e-06
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626
N D L+ + +V R L +A + +AAQ++G V ++ + +G L ++
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 1627 VLVDPIPEVRSVAARAIGSLIRG--MGEENFPDL--VSWLLDALKSDNSNVERSGAAQGL 1682
+ D VR A AI L+R G F L S L+ A++ + + +A L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL-KVKSAFLL 191
Query: 1683 SEVLA----ALGTVYFEHILPDIIRNCSHQRASVRD 1714
+L GT+ ++ ++ + + +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 25/217 (11%)
Query: 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289
+ + + L +G+A LR +AA +G + + + + L+R++ V+
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 2290 SAILSTLSIIIRKGGIALKPF-----LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
L +S ++R+ L F L ++ +Q + ++ +A L L
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVL----MRAMQQQVQKLKVKSAFLLQNLLVGH 198
Query: 2345 TRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398
+ L++ ++ + E +L AL ++ + V + + L++
Sbjct: 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEE 256
Query: 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL 2435
L+ H +L + E+ + + L +
Sbjct: 257 LLRHRC--------QLLQQHEEYQEELEFCEKLLQTC 285
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 5e-06
Identities = 87/762 (11%), Positives = 221/762 (29%), Gaps = 126/762 (16%)
Query: 1896 SSSSERRQVAGRALGELVRKLG--ERVLPS-IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
++ ++R+ A L L ++ E + I ++ K + L +
Sbjct: 19 ATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALC 78
Query: 1953 SAGKSQLLSFMDEL-IPTIRTALCDSILEVRESAGLAFSTLFKS-AGMQAIDEIVPTLLH 2010
+ + EL +P L +A T+ + +G++ + P
Sbjct: 79 ENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKEL 138
Query: 2011 ALEDDQTSDTALDGLKQILSVRT----------TAVLPHILPKLVHLPLSAFNAHALGAL 2060
+++ DT L L ++ RT + ++ + L L
Sbjct: 139 CTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRL 198
Query: 2061 AEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120
+V ++ + + S+ + + + + + ++ + + L
Sbjct: 199 LDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLA 258
Query: 2121 VG--DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
+A L G +++ + ++ ++ + + D A E L
Sbjct: 259 PDMESKVRVTVAITALLNGPLDVGNQVVARE---GILQMILAMATTDDELQQRVACECLI 315
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL 2238
+ S K++ K L + +L
Sbjct: 316 ----------------------AASSKKDKAK-----------ALCEQGVDILKRLYH-- 340
Query: 2239 ISGSAELREQAALGLGEL---------IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289
S + +R +A +GL +L I + + + LI+ D+ +
Sbjct: 341 -SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399
Query: 2290 SAILSTLSI--IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV 2347
+ L+ L++ ++ I K + L + + ++ L +
Sbjct: 400 ADGLAYLTLDAECKEKLIEDKASIHAL----MDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455
Query: 2348 DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 2407
+ L +++ + + I E + K ++ + + L L + +
Sbjct: 456 EMLP-EMIELAKFAKQHIPE---EHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511
Query: 2408 RVSAASILGIMSQCMED-GQLADL--LQELLNLASSPSWAARHGSVLVFATFLRHNPSAI 2464
+ A +L + E G++ ++ LL +A + + + A +
Sbjct: 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571
Query: 2465 SMS--------PLFLSIL------------------------------------DRLKSS 2480
S S L++L +++
Sbjct: 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631
Query: 2481 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 2540
L ++ L A+ + L L++ + D + + D+ E AL
Sbjct: 632 LMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689
Query: 2541 KSVAKANPSA--IMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ + ++ +A + L + + S V+
Sbjct: 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 35/268 (13%)
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 2279
+ + LQ ++ S LR A + L L + + K + + G L+
Sbjct: 78 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQ 135
Query: 2280 IGDRFPWQVKSAILSTLSIIIR------KGGIALKPFLPQLQTTFIKCLQDSTR-TVRSS 2332
+ ++ I S L + K + + L ++C + + + S
Sbjct: 136 LKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKS 190
Query: 2333 AALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250
Query: 2382 KSVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 2434
+ +R + L+ L+ + +A L +S Q + L
Sbjct: 251 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPS 2462
NL S GS + + P+
Sbjct: 311 KNLIHSKHKMIAMGSAAALRNLMANRPA 338
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 32/150 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
L P + + +R + L + + PL+ + +
Sbjct: 11 SSGLVPRG----SHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE 54
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W+++ A + G + + L IK L+D + VRS AA +L ++
Sbjct: 55 D-WRIRGAAAWII------GNFQDERAVEPL----IKLLEDDSGFVRSGAARSLEQIG-- 101
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
RV + L + R+ + L
Sbjct: 102 GERVRAAMEKLAET---GTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
++ L + +R +AA +G V+PL+ L+ +R +L +
Sbjct: 48 LESLSNEDWRIRGAAAWIIGNFQDERA-VEPLI----KLLEDDSGFVRSGAARSL-EQIG 101
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416
RV + ++ L R A + L
Sbjct: 102 GE----------RVRAAMEKLAETGTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVR 2533
+ L SL +E + +R A+ +G Q A V+ L + L DDS VR
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWIIG-----NFQDERA-----VEPL---IKLLEDDSGFVR 90
Query: 2534 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
A +L+ + A+ + + G+ R A
Sbjct: 91 SGAARSLEQI--GGERVR--------AAMEKLAETGTGFARKVAVN 126
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 64/180 (35%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
L + D VR + A+ MG+E F L+ ++L +++ + R AA
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSR----MGDEAFEPLL----ESLSNEDWRI-RGAAA- 63
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
++ ++ +
Sbjct: 64 ---WIIGNFQD--------------------------------------------ERAVE 76
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L D++ VR A + L + + E R+ +V L
Sbjct: 77 PLIKLLEDDSGFVRSGAARS---LEQIGGERVRAAMEKLAET----GTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 33/147 (22%)
Query: 2396 LKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFAT 2455
+ ++ VR ++ L M + + LL S+ W R + +
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGD--------EAFEPLLESLSNEDWRIRGAAAWIIGN 68
Query: 2456 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515
F + A+ + L L+D+ +R + ++L ++ V
Sbjct: 69 F--QDERAV----------EPLIKLLEDDSGFVRSGAARSLEQI----------GGERVR 106
Query: 2516 DILASVVSALHDDSSEVRRRALSALKS 2542
+ + R+ A++ L++
Sbjct: 107 AAM---EKLAETGTGFARKVAVNYLET 130
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 29/141 (20%)
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
+AD N RR+ A L R+ + LL + S++ +R AA
Sbjct: 17 RGSHMADENKWVRRD-VSTA-------LSRMGDEAF----EPLLESLSNEDWRIRGAA-- 62
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
A + + + L+K LED + + + + L + ++
Sbjct: 63 -AWI----IGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRA 107
Query: 1503 KLTEVLTDTHPKVQSAGQTAL 1523
+ ++ + L
Sbjct: 108 AMEKLAETGTGFARKVAVNYL 128
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 4e-05
Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 42/353 (11%)
Query: 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142
+ VQ LA T+ + E L E+ K + + + +R+ +A + +
Sbjct: 116 LNHSTQFVQGLA---LCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172
Query: 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202
+ + LL++ + + + L+ + P ++ + K++ +
Sbjct: 173 VP----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP-DMLAHFRKLVPQLVRI 227
Query: 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
++ + G P +L L+ L + E L ++ T
Sbjct: 228 LKNLIMSGYS-PEHDVSGISDPFLQVRIL-RLLRILGRNDDDSSEAMNDILAQVATNTET 285
Query: 2263 QS------LKEFVIPITG------------PLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304
L E V+ I ++ ++ L++L ++
Sbjct: 286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH 345
Query: 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--STRVDPLVGDLLSSLQVSD 2362
A++ ++T + CL+D +++ A+ AL + ++ +LL L +
Sbjct: 346 NAVQRH----RSTIVDCLKDLDVSIKR---RAMELSFALVNGNNIRGMMKELLYFLDSCE 398
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASIL 2415
+ + + A K S + ++ +VR A L
Sbjct: 399 PEFKADCASG---IFLAAEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNL 446
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 42/251 (16%), Positives = 86/251 (34%), Gaps = 28/251 (11%)
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ L + SS + D R + ALK + K V + VL+ D +
Sbjct: 23 IQKLCDRVASSTLLDD---RRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQT-DRSDSEI 78
Query: 2407 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
+ + ++ I+S E+ + ++ +L F +
Sbjct: 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLG------------SQFTEIFIKQQENV-- 124
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
L LS+L+ + F +R K L LL V ++ ++ L
Sbjct: 125 -TLLLSLLE-------EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176
Query: 2527 DDSSEVRRRALSALKSVAKANPS--AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 2584
D +R + L+++ ++N + I+ F L ++G++ + E C +
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 2585 FQLTRGSEYIQ 2595
L + + Q
Sbjct: 237 QNLLKNNNSNQ 247
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 13/254 (5%)
Query: 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS---TRVDPLVGDLLSSLQ 2359
G I + L KCL+D VR +AA+ + KL ++ + L +
Sbjct: 111 GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
S+ + + AL + + S + + + L + + ++ L +
Sbjct: 171 DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN 230
Query: 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+D + + + + S + A +V V FL P + L L
Sbjct: 231 P-KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289
Query: 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSA 2539
+L + ++ + + + ++ + ++ V ++D V+ L
Sbjct: 290 TLLSGEPEVQYVALRNINLIVQKR--------PEILKQEIKVFFVKYNDPIYVKLEKLDI 341
Query: 2540 LKSVA-KANPSAIM 2552
+ +A +AN + ++
Sbjct: 342 MIRLASQANIAQVL 355
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-04
Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 23/250 (9%)
Query: 2317 TFIKCLQDSTRTVRSSAALALGKLSALSTR--VDPLVGDLLSSLQVSDAGIR-EAILTAL 2373
+F+K +D +R ALA+ + + + L L L+ D +R A +
Sbjct: 90 SFVKDCEDPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 146
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL--- 2430
K + + V + L+DL+ + V +A + L +S+ + L DL
Sbjct: 147 K-LHDINAQMVEDQGFL---DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202
Query: 2431 -LQELLNLASSPS-WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPL 2488
+ +LL + + W G + + +NP SI +R+ L +
Sbjct: 203 NINKLLTALNECTEW----GQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAV 255
Query: 2489 REASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548
++ K L L + +++ LA + L EV+ AL + + + P
Sbjct: 256 VLSAVKVL-MKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRP 314
Query: 2549 SAIMVHVALF 2558
+ + +F
Sbjct: 315 EILKQEIKVF 324
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2629 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.88 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.86 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.84 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.84 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.82 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.79 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.78 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.77 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.76 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.74 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.72 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.7 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.7 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.7 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.7 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.66 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.64 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.61 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.61 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.6 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.6 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.58 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.55 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.55 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.54 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.53 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.52 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.52 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.51 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.51 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.5 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.5 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.49 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.48 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.47 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.44 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.39 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.35 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.35 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.34 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.32 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.31 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.3 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.29 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.21 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.15 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.14 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.09 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.07 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.05 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.95 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.94 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.92 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.87 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.84 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.8 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.78 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.77 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.76 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.76 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.73 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.7 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.7 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.69 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.68 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.67 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.66 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.65 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.64 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.6 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.54 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.52 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.52 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.49 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.47 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.47 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.46 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.38 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.37 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.34 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.1 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.06 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.04 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.04 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.98 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.86 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.66 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.63 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.34 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 97.23 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.16 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.05 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.03 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.91 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 96.87 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 96.84 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.78 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.55 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.39 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 95.42 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 94.96 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 93.76 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 91.92 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 91.35 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 90.16 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 89.11 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 89.02 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 89.02 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 87.57 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 85.53 | |
| 3jxy_A | 232 | Alkylpurine DNA glycosylase ALKD; heat repeat, DNA | 83.79 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 83.16 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=581.69 Aligned_cols=1015 Identities=17% Similarity=0.189 Sum_probs=759.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
.-++.++..+.++++.+|..|...+...... +.+...+.+++.+++.+.+++|++|..|+.+|+.++...+. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3467788889999999999987776655431 22234578999999999999999999999999999987665 4
Q ss_pred hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhh
Q 000049 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2629)
+++.+++.++..+.|+++.||.+|+.+|+.++..++.+.. + +......+.
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~------------------~~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------G------------------SALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------------------------CCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------c------------------cchHHHHHH
Confidence 5678899999999999999999999999999877653210 0 000112355
Q ss_pred hHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000049 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2629)
Q Consensus 1576 ~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~ 1654 (2629)
.++|.+.+.+.+ .++.+|..+..+++.++...+ +.+.||++.+++.+...+.++++.||..|..+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 677777777774 678999999999999998654 46789999999999999999999999999999999999998888
Q ss_pred chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch
Q 000049 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f 1731 (2629)
++.+++.+++.+.++.+...|..++++++.++...|.. +++.++|.+++.+.+.++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 88999999999887654446888999999999988864 347889999999999999999999999999999999999
Q ss_pred HhhHHhHHHHHHhhcCCC-------------------------------------ChhHHHHHHHHHHHHHHHhhh---c
Q 000049 1732 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1771 (2629)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~-------------------------------------~~~VR~~al~al~~iv~~~~~---~ 1771 (2629)
.||++.++|.++..+.++ ...+|.+|..++..++...+. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999887521 013688888888877765442 2
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCC--CCcccHHHHHHHHHHHhchhhHHHHHHHH
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD--DEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~e--de~~~~~~~~~~l~~~Lg~e~~~~vl~~L 1849 (2629)
.++.++|.+...+.|.++.+|..+++.++.++.......+.. . +.. ....+. ...+. ...+.+++.+
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~--~-~~~~~~~~~~~---~~~~~-----~~l~~ll~~l 439 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL--C-DPDAMEQGETP---LTMLQ-----SQVPNIVKAL 439 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---------------CCCH---HHHHH-----HHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc--c-Cccccccccch---HHHHH-----HHhhHHHHHH
Confidence 345577888888888888899999888888876543210000 0 000 000000 01111 1234566666
Q ss_pred HhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhccc----hhhh
Q 000049 1850 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPS 1923 (2629)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~--~~R~~A~~~L~~lv~~~~~~----~l~~ 1923 (2629)
...+.|.++.+|.+++.+++.++...+..+.++++.+++.+...+.++++ .+|..++..++.++...++. +++.
T Consensus 440 ~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ 519 (1230)
T 1u6g_C 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQA 519 (1230)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTT
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHH
Confidence 66678999999999999999999988877888999999999999998764 89999999999998877665 5678
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch------hhHHHhHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHH
Q 000049 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKS 1995 (2629)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~al~~l~~~ 1995 (2629)
++|.+...+.++++.+|..++.+++.++..++. ..+.+|++.++|.+...+ .|.++++|..|..+++.+...
T Consensus 520 llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 520 LVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 899999899999999999999999998877664 367889999999999999 788999999999999999998
Q ss_pred hChhh---hhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHH-hCCChhhh
Q 000049 1996 AGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGPGLNFH 2071 (2629)
Q Consensus 1996 ~g~~~---~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~-~g~~l~~~ 2071 (2629)
.|... +..++|.|.+.+.++..+..++. +++.++.. .+.++.++
T Consensus 600 ~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~--------------------------------al~~i~~~~~~~~~~~~ 647 (1230)
T 1u6g_C 600 LGDNLGSDLPNTLQIFLERLKNEITRLTTVK--------------------------------ALTLIAGSPLKIDLRPV 647 (1230)
T ss_dssp TGGGCCTHHHHHHHHHHHHTTSSSHHHHHHH--------------------------------HHHHHTTCSSCCCCHHH
T ss_pred hCchhhhhHHHHHHHHHHHhccchhHHHHHH--------------------------------HHHHHHhCccccchHHH
Confidence 88643 34445555555554443333333 33333221 12357889
Q ss_pred HhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhh
Q 000049 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2072 l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
++.++|.+.+.+.+++..+|..+..+++.++...+. +.+.+++..++..+.++|+.++..+..++..+++..+..+
T Consensus 648 ~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~ 727 (1230)
T 1u6g_C 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 727 (1230)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhH
Confidence 999999999999999999999999999999987753 3355555555566778889999999999999998877777
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccc
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l 2227 (2629)
.++.+.+++.++..+.++. +...+..++..+++.. .. . + ++ +...
T Consensus 728 ~~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l---------------~~-~---------~-----~~---~~~~ 772 (1230)
T 1u6g_C 728 SKISGSILNELIGLVRSPL--LQGGALSAMLDFFQAL---------------VV-T---------G-----TN---NLGY 772 (1230)
T ss_dssp GGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHH---------------HT-T---------C-----CT---TCSH
T ss_pred HHhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHH---------------Hh-c---------C-----CC---CCCH
Confidence 7788888888888876543 1112222222222111 00 0 0 00 1122
Q ss_pred hhhHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHH
Q 000049 2228 QPLLPIFLQGLISG-----SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIR 2301 (2629)
Q Consensus 2228 ~~ilp~ll~~L~~~-----~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~ 2301 (2629)
..+++.+++.+..+ ....+..++.+++.++..+|+ .....+..+ +..+.+ ......+..++.+++.++.
T Consensus 773 ~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~ 847 (1230)
T 1u6g_C 773 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGH 847 (1230)
T ss_dssp HHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHHH----HHHhCCCCccHHHHHHHHHHHHHhcc
Confidence 23333333222211 234577889999999998874 233332322 333332 1356678888888998877
Q ss_pred hcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2302 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2629)
Q Consensus 2302 ~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2629)
..+ +.+ .|++++++++++.|+++.||..|+.+||.++. ++++.++|.++..+... ++.|+.++++|++++...+
T Consensus 848 ~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~ 921 (1230)
T 1u6g_C 848 HID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSAS 921 (1230)
T ss_dssp HSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSC
T ss_pred cCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCC
Confidence 543 344 48899999999999999999999999999974 45778999999999754 6779999999999999876
Q ss_pred CCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCC
Q 000049 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNP 2461 (2629)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p 2461 (2629)
.....++.+.|++.|...+.+.++.+|..+++|+|.++...++ .+++
T Consensus 922 ~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~----~l~p----------------------------- 968 (1230)
T 1u6g_C 922 VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----TLLP----------------------------- 968 (1230)
T ss_dssp STTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----GTHH-----------------------------
T ss_pred hhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH----HHHH-----------------------------
Confidence 6666899999999999999888899999999999999877542 1222
Q ss_pred ccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000049 2462 SAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541 (2629)
Q Consensus 2462 ~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~ 2541 (2629)
.+.+.+.++++.+|..++.++++++.... +..+.++..+++.++.+++|++.+||++|+.+++
T Consensus 969 --------------~l~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~ 1031 (1230)
T 1u6g_C 969 --------------RLKGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFN 1031 (1230)
T ss_dssp --------------HHTTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHH
T ss_pred --------------HHHHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 22233445556677777777777665433 2223467778888999999999999999999999
Q ss_pred HHHhhCchhhhhhHHHHHHHHHhhhcCC------------------cchhhhhHHHHHHHHhccccCchhHHHHHHHhhh
Q 000049 2542 SVAKANPSAIMVHVALFGPALAECLKDG------------------STPVRLAAERCAVHAFQLTRGSEYIQGAQKFITG 2603 (2629)
Q Consensus 2542 ~~a~~~~~~v~~~l~~l~p~l~~~~~~~------------------~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l~~ 2603 (2629)
++++++|+.+.+|++.++|.||++++.+ +..+|.+|..|+..+++...+. . .+.++
T Consensus 1032 ~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~--i-~~~~~--- 1105 (1230)
T 1u6g_C 1032 SAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR--L-DIFEF--- 1105 (1230)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSS--S-CHHHH---
T ss_pred HHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHh--C-CHHHH---
Confidence 9999999999999999999999998544 4489999999999999986542 2 13334
Q ss_pred hhhhhhccCCCC
Q 000049 2604 LDARRLSKFPEH 2615 (2629)
Q Consensus 2604 ~~~~~l~~~~~~ 2615 (2629)
..++++.++|+
T Consensus 1106 -~~~~~~gl~d~ 1116 (1230)
T 1u6g_C 1106 -LNHVEDGLKDH 1116 (1230)
T ss_dssp -HHHHHHTTSSC
T ss_pred -HHHHHcccCch
Confidence 45677777773
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=571.82 Aligned_cols=1074 Identities=17% Similarity=0.182 Sum_probs=786.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch--hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~--l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
..+..+++.+.+ .|.+.|..|...|....+...... .....+++.+.+.+.++ +|.+|.+|+.+++.+++.++.
T Consensus 6 ~~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 6 YHISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--
T ss_pred hHHHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--
Confidence 345667777654 457889988888877664321111 11125777888888876 899999999999999987764
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---------hHHhhHHHHHhhhc-cCChhhhHHHHHHHHH
Q 000049 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGA 1484 (2629)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---------~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ 1484 (2629)
+++..+++.++..+.|+++.||.++..+++.++..+.+. .+..++|.+++.+. +++|++|.+++.+++.
T Consensus 82 -~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 82 -YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 788899999999999999999999999999999988765 47899999999998 5889999999999999
Q ss_pred HHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCC-hhHH-HHHHHHHh
Q 000049 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQ 1562 (2629)
Q Consensus 1485 la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~-~~~r-~al~~L~~ 1562 (2629)
++...+..+.++++.+++.++..+.|+++.||..|+.+++.++...++..+..+++.++..+.+++ ...| .+++.+..
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 998888888888999999999999999999999999999999988876666677777777765432 2233 34444432
Q ss_pred c-cccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc------------
Q 000049 1563 T-TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------ 1629 (2629)
Q Consensus 1563 ~-~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~------------ 1629 (2629)
. ...+..-.+++..++|.+.+.+.+.++.+|..+..+++.++...+ +++.||++.++|.+...+.
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~ 318 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDE 318 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCccccc
Confidence 1 111222235678899999999999999999999999999998654 4788999999999877663
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhccCCChHHHHHHHHH
Q 000049 1630 -------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2629)
Q Consensus 1630 -------------------------d~~~~VR~~A~~aL~~l~~~~g~---~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~ 1681 (2629)
|..|.+|..|+.+++.++...++ .++..++|.+...+.+.. ..+|..++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~ 397 (1230)
T 1u6g_C 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE-ENVKADVFHA 397 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 12367899999999999987664 256677787777665443 5589899999
Q ss_pred HHHHHHhhCh------------------h----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHH
Q 000049 1682 LSEVLAALGT------------------V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2629)
Q Consensus 1682 L~~i~~~~g~------------------~----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii 1739 (2629)
+..++...|. . .++.++|.+.+.+.+.++.+|.+++.+++.++..++..+.+|++.++
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll 477 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 477 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHH
Confidence 9888876652 1 23555666666689999999999999999999998888889999999
Q ss_pred HHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccc
Q 000049 1740 PAILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2629)
Q Consensus 1740 ~~ll~~L~d~~~--~VR~~al~al~~iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~ 1813 (2629)
|.++..+.|... .+|..++.++..++..++.+ .++.++|.+...+.|.+|++|..++..++.++..+.....
T Consensus 478 ~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~-- 555 (1230)
T 1u6g_C 478 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ-- 555 (1230)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS--
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc--
Confidence 999999999864 88999999988888766555 4567899999999999999999999999998765432100
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc--cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHH
Q 000049 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2629)
Q Consensus 1814 ~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~ 1891 (2629)
...... . .+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+.
T Consensus 556 -----~~~~~~---------~-----~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~ 616 (1230)
T 1u6g_C 556 -----PSSFDA---------T-----PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 616 (1230)
T ss_dssp -----CCCCCC---------H-----HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHH
T ss_pred -----ccccch---------H-----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHH
Confidence 000000 0 13345666665555 78888999999999999999988888889999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHH
Q 000049 1892 SSLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2629)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll 1967 (2629)
..+.+. ..|..+..+++.++...+ ..+.+.++|.+...+.++++.+|.+++.+++.++...+.....+++..++
T Consensus 617 ~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l 694 (1230)
T 1u6g_C 617 ERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 694 (1230)
T ss_dssp HHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 888754 378889999998875432 23678899999999999999999999999999988776433233444444
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---hhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhh
Q 000049 1968 PTIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2629)
Q Consensus 1968 ~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2629)
..+...+.+.|..++..+..++..+++..+.. ..+.++|.++..+++....+.++.++..++
T Consensus 695 ~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~--------------- 759 (1230)
T 1u6g_C 695 DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF--------------- 759 (1230)
T ss_dssp TTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHH---------------
T ss_pred HHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHH---------------
Confidence 44445567888999999999999888665543 245667777766665443333333332221
Q ss_pred hcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHh
Q 000049 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119 (2629)
Q Consensus 2045 ~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~-----~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~ 2119 (2629)
..+... +. -.+.+..+++.+++.+.. .+...+..+..+++.++...++.. ..+++.+..
T Consensus 760 -------------~~l~~~-~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~~~ 823 (1230)
T 1u6g_C 760 -------------QALVVT-GT-NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-PAVVGQFIQ 823 (1230)
T ss_dssp -------------HHHHTT-CC-TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-HHHHTTTTT
T ss_pred -------------HHHHhc-CC-CCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-HHHHHHHHH
Confidence 111110 11 023456666666655432 234567777888888877665433 267777777
Q ss_pred hcCC--CChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHH
Q 000049 2120 GVGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2629)
Q Consensus 2120 ~l~d--~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~ 2197 (2629)
.+++ .+...+..++.+++.+... .++.+ .+++.+.++..+.|+++.||.+|+.||+.++..
T Consensus 824 ~~~~~~~~~~~~~~~l~~l~~~g~~--~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~-------------- 886 (1230)
T 1u6g_C 824 DVKNSRSTDSIRLLALLSLGEVGHH--IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG-------------- 886 (1230)
T ss_dssp TTTTTTCCHHHHHHHHHHHHHHHHH--SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--------------
T ss_pred HhCCCCccHHHHHHHHHHHHHhccc--CCCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc--------------
Confidence 7765 4567788888888887553 23333 366889999999999999999999999998521
Q ss_pred HHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHH
Q 000049 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2629)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li 2277 (2629)
++..++|.+++++.++ ++.|...+.+|.+++...+...+.||+..|++.|+
T Consensus 887 ----------------------------~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~ 937 (1230)
T 1u6g_C 887 ----------------------------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL 937 (1230)
T ss_dssp ----------------------------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHT
T ss_pred ----------------------------CHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHH
Confidence 1234567777777655 56688888888888876554555565555555444
Q ss_pred HHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHh
Q 000049 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357 (2629)
Q Consensus 2278 ~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~ 2357 (2629)
+ .+.+.++.+|..++.|+|.+....+ +.++|.|...
T Consensus 938 ~------------------------------------------~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~ 973 (1230)
T 1u6g_C 938 K------------------------------------------HCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGY 973 (1230)
T ss_dssp T------------------------------------------CCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTT
T ss_pred H------------------------------------------HhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHH
Confidence 4 4444455677777777777765543 5677777777
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChh---HHHHHHHHH
Q 000049 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQEL 2434 (2629)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~l 2434 (2629)
++++++.+|..++.+++.++...+... .++.+.++..+...++|++.++|.++..+++.+++..|+. .+..+++.+
T Consensus 974 l~~~~~~~R~~~~~~l~~~~~~~~~~~-~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l 1052 (1230)
T 1u6g_C 974 LISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1052 (1230)
T ss_dssp SSSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHccCchhh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 777777788888888877776666555 4677777777778889999999999999999999887752 233334333
Q ss_pred HhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhh
Q 000049 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV 2514 (2629)
Q Consensus 2435 l~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l 2514 (2629)
.+.......-.| .+..+| +++..+++.++|++|+.|+++++.++... ..+
T Consensus 1053 ~~~~~~~~~~~~---------~v~~gp----------------~k~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~ 1102 (1230)
T 1u6g_C 1053 YNETKVRKELIR---------EVEMGP----------------FKHTVDDGLDIRKAAFECMYTLLDSCLDR-----LDI 1102 (1230)
T ss_dssp HHTTSCCGGGEE---------EEEETT----------------EEEEEETHHHHHHHHHHHHHHHHHSSCSS-----SCH
T ss_pred HHHhcccHHhhe---------eeccCC----------------cccccCCcHHHHHHHHHHHHHHHHHHHHh-----CCH
Confidence 332111110000 011112 12455677799999999999999987543 358
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcC--Ccchhh----------hhHHHHHH
Q 000049 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPVR----------LAAERCAV 2582 (2629)
Q Consensus 2515 ~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~vk----------~aae~a~~ 2582 (2629)
.++++.++.++.|+ .|+|..+..+|.+++..+|..+.++++.++.++.+.+.. +...|| +++.||+.
T Consensus 1103 ~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~ 1181 (1230)
T 1u6g_C 1103 FEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVA 1181 (1230)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHH
Confidence 89999999999995 899999999999999999999999999999999887432 333454 45558999
Q ss_pred HHhccccCchhH
Q 000049 2583 HAFQLTRGSEYI 2594 (2629)
Q Consensus 2583 ~l~~~~~~~~~~ 2594 (2629)
++.++++.+...
T Consensus 1182 ~l~~~~~~~~~~ 1193 (1230)
T 1u6g_C 1182 ALLTIPEAEKSP 1193 (1230)
T ss_dssp HTTSSCSCSSSS
T ss_pred HHHhCCCcccCh
Confidence 999887765443
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=412.01 Aligned_cols=723 Identities=15% Similarity=0.151 Sum_probs=532.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHHH--------HHhhcCCCC
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~--------~w~~~~~~~ 1128 (2629)
+++.++|++++|||+.+|++|+++|++... .|....++..+.....+.+..+|.+|.. .|...+.+.
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~ 87 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH
Confidence 367889999999999999999999997642 1333334444444335667788888753 366544333
Q ss_pred CCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh
Q 000049 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2629)
Q Consensus 1129 ~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~ 1206 (2629)
++.+ ..+++.|.+++..+|+.++++++.++.. +++.|++++..+.+... ++++.+|+++..+++.+++
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~----------~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD----------SEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS----------CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHH
Confidence 3345 7788899999999999999999998763 56777777777776531 1345899999999999987
Q ss_pred hcCCC----C----hhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc---cchhhhHHHHHHHhcccCCChhhhhh
Q 000049 1207 VLRTK----D----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2629)
Q Consensus 1207 ~~~~~----~----~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~---~~~~~Ll~~~~~~l~~~~~~~~~~~~ 1275 (2629)
..+.. + .+.+++.+ .+++.|+++.||..++.++..++...+. ..+..+++.+...+.+ .+..
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l-~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d------~~~~ 230 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKF-LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGD------EEPE 230 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHH-TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTC------CCHH
T ss_pred HhHHHhchhhhcchHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCC------CCHH
Confidence 65432 2 34555555 3677899999999999998777654332 2345677766666643 2356
Q ss_pred HHHHHHHHHHHHHhhhcc-CCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhh------hccchHHHHHHHHHHhh-
Q 000049 1276 VREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------MQDEAPTLVSRLLDQLM- 1347 (2629)
Q Consensus 1276 vr~~~v~~~~~La~~l~~-~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~------~~~~~~~ll~~ll~~L~- 1347 (2629)
+|..++..++.++..... ..++++.+++.+++.++++++.|+..+.+++..+... .+.....+++.++..+.
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999876543 2567888999999999999999999999888776532 23334567777777762
Q ss_pred ---------cC-----------CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000049 1348 ---------KS-----------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407 (2629)
Q Consensus 1348 ---------~~-----------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La 1407 (2629)
.. .+|..|+.|+.+|+.++...|...+. .+++.+.+.+.+. +|..|++|+.+++.++
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~--~l~~~l~~~l~~~-~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIA 387 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 22 35778999999999999998866554 6899999999887 8999999999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHh
Q 000049 1408 EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1408 ~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2629)
++.++.+.+++..++|.++..+.|+++.||.++..+++.+...+.+
T Consensus 388 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---------------------------------- 433 (852)
T 4fdd_A 388 EGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS---------------------------------- 433 (852)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH----------------------------------
T ss_pred hcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------------------------
Confidence 9988878899999999999999999999999988887776432211
Q ss_pred hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000049 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2629)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2629)
.....++..+++.++..+.|+++.||.+|+.+|+.+++..+. |++..+++.|...+
T Consensus 434 ---~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l------------------ 492 (852)
T 4fdd_A 434 ---QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF------------------ 492 (852)
T ss_dssp ---SCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH------------------
T ss_pred ---chHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH------------------
Confidence 113445678889999999999999999999999999876653 34444444444443
Q ss_pred ccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHH---HhcCCCHHHHHHHHH
Q 000049 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAAR 1641 (2629)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~---~L~d~~~~VR~~A~~ 1641 (2629)
++.+......+.++++.++..++..-.-.+|++.++|.+.+ .+.|.++.+| .+.+
T Consensus 493 ---------------------~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~ 550 (852)
T 4fdd_A 493 ---------------------SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLE 550 (852)
T ss_dssp ---------------------HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHH
T ss_pred ---------------------HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHH
Confidence 22233444456677777776554422224589999999884 4567778886 7899
Q ss_pred HHHHHHhhhCCCC---chhhHHHHHHHhcc----------------CCChHHHHHHHHHHHHHHHhhChhH---H--HhH
Q 000049 1642 AIGSLIRGMGEEN---FPDLVSWLLDALKS----------------DNSNVERSGAAQGLSEVLAALGTVY---F--EHI 1697 (2629)
Q Consensus 1642 aL~~l~~~~g~~~---~~~ll~~Ll~~L~~----------------~~~~~~R~~a~~~L~~i~~~~g~~~---l--~~l 1697 (2629)
+++.++..+|... .+.+++.++..+.+ ......+..+...++.++..+|.+. + +.+
T Consensus 551 ~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~ 630 (852)
T 4fdd_A 551 CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI 630 (852)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCH
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcH
Confidence 9999999999752 34555544433321 1123356778888999999998663 2 467
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHH
Q 000049 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2629)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~ll 1777 (2629)
++.+++.+.++++.+|+.++.+++.++..+|..|.+|++.++|.+...+.+++..+|..|..+++.++...+....+
T Consensus 631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p--- 707 (852)
T 4fdd_A 631 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQP--- 707 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGG---
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHH---
Confidence 89999999999999999999999999999999999999999999999998888889998888888776655432100
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc--cC
Q 000049 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SD 1855 (2629)
Q Consensus 1778 p~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D 1855 (2629)
+...+++.++..+ .+
T Consensus 708 ---------------------------------------------------------------~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 708 ---------------------------------------------------------------YIPMVLHQLVEIINRPN 724 (852)
T ss_dssp ---------------------------------------------------------------GTHHHHHHHHHHHTCSS
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHhCCCC
Confidence 1111222222222 23
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhh--c
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--L 1932 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~--L 1932 (2629)
....+++.|+.+++.+....|..+.++++.+++..+..+.. .+.+.|..|..++..++..-+....+.+..++... .
T Consensus 725 ~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~ 804 (852)
T 4fdd_A 725 TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW 804 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhc
Confidence 35578999999999999999988889999999999999874 56678999999999999987776666665443332 3
Q ss_pred CCCChhHHHHHHHHH
Q 000049 1933 KDPSASRRQGVCIGL 1947 (2629)
Q Consensus 1933 ~d~~~~vR~~a~~aL 1947 (2629)
.++.++.+......|
T Consensus 805 ~~~~~~l~~~~~~~l 819 (852)
T 4fdd_A 805 INPKDDLRDMFCKIL 819 (852)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 445566555544443
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=407.43 Aligned_cols=742 Identities=13% Similarity=0.152 Sum_probs=564.7
Q ss_pred hHhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh---
Q 000049 1132 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--- 1206 (2629)
Q Consensus 1132 ~~~Ll~~l-~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~--- 1206 (2629)
+..+|..+ .++|+.+|+.|.+.+..+.+. .|+.+. .+.+.+. .. ..+..+|..++..|+....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~----~l~~il~----~~----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAG----LSSQVLI----DE----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHT----CT----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHH----HHHHHHh----CC----CCChHHHHHHHHHHHhhccCcC
Confidence 35677777 889999999999999876554 233333 3333321 10 1244789888888887642
Q ss_pred ------------h-cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHhcccCCChhh
Q 000049 1207 ------------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 1272 (2629)
Q Consensus 1207 ------------~-~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~-~~~~~Ll~~~~~~l~~~~~~~~~ 1272 (2629)
. ++++....+...++ .++.++++.+|..+..++..+....+. ..|++++|.+.+.+... .
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-----~ 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-----Q 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-----S
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-----C
Confidence 1 34344445555554 467788899999999998888777544 58999999888888642 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccC----CCcchhhHHHHHhhcCCC--cHHHHHHHHHhhhhhHhhhccch------HHHHH
Q 000049 1273 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA------PTLVS 1340 (2629)
Q Consensus 1273 ~~~vr~~~v~~~~~La~~l~~~----~~~l~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~l~~~~~~~~------~~ll~ 1340 (2629)
+..+|+.++..++.+.+.+... .+.+..+++.+...+.++ +++||..+.+|+..++..++... ..+++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 3468999999999999876533 356778888899999998 89999999999988765543221 23444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Q 000049 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 1411 (2629)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~------- 1411 (2629)
.+.+ +..++++..|..+..+|..++...+..... -. .+++.+...+.+. +...|..++..+..+++...
T Consensus 228 ~l~~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4443 345567999999999999999877643221 11 5666677777766 78999999999999887631
Q ss_pred ----------cCchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh
Q 000049 1412 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1412 ----------~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
..+.+++..++|.++..+.+ .+..+|.++..++..++..+++..+..++|.+.+.+.+.+|+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778899999998874 3468999999999999998887777889999999999999999
Q ss_pred hHHHHHHHHHHHhhCc-hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhH
Q 000049 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 1553 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~ 1553 (2629)
|.+++.+++.++..+. +.+.++++.++|.+...+.|+++.||.++++++++++..++..
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------------------- 445 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-------------------- 445 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG--------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh--------------------
Confidence 9999999999998764 7788889999999999999999999999999999998765410
Q ss_pred HHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC--CCcccchHhhhHHHHHHHhcC-
Q 000049 1554 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 1630 (2629)
Q Consensus 1554 r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d- 1630 (2629)
+ ...+.+..++|.+.+.+.+. +++|..++.++++++..+++ +..+.+|++.+++.+...+.+
T Consensus 446 -----------~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 446 -----------I---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp -----------S---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred -----------c---CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 0 01123445666666667665 78999999999999987652 356889999999999999984
Q ss_pred -CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccC--------------CChHHHHHHHHHHHHHHHhhChh
Q 000049 1631 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 1692 (2629)
Q Consensus 1631 -~~~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~--------------~~~~~R~~a~~~L~~i~~~~g~~ 1692 (2629)
.++.+|..++.+++.++...|++ ++..++|.+++.+.+. .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4567777777766532 11235667888999999988874
Q ss_pred ---HHHhHhHHHHHhhcCCCh-hhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000049 1693 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2629)
Q Consensus 1693 ---~l~~llp~l~~~l~~~~~-~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~ 1768 (2629)
+.+.++|.++..+.+.++ .+|+.++.+++.++..+|..|.||++.++|.+...+.+++..+|..++.++..++...
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 457788888888888777 8999999999999999999999999999999999998877788888777766665543
Q ss_pred hhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHH
Q 000049 1769 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2629)
Q Consensus 1769 ~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~ 1848 (2629)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 000 11122233
Q ss_pred HHhhccCc--cHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000049 1849 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1915 (2629)
Q Consensus 1849 L~~~~~D~--~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-----------~~~R~~A~~~L~~lv~~ 1915 (2629)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..+..+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 367999999999999998888999999999999999887432 45789999999999988
Q ss_pred hcc---c---hhhhHHHHHhhhcCCC----ChhHHHHHHHHHHHHHHhhchhhHHHhHH-HHHHHHHHHhc---CCcHHH
Q 000049 1916 LGE---R---VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1981 (2629)
Q Consensus 1916 ~~~---~---~l~~llp~L~~~L~d~----~~~vR~~a~~aL~~li~~~~~~~l~~~l~-~ll~~l~~~L~---d~d~~V 1981 (2629)
+++ . +.+.+++.+...+.|. +..+|..++.+++.++..+++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 2 4566777777777663 88999999999999988885556778888 88999888766 567899
Q ss_pred HHHHHHHHHHHHH
Q 000049 1982 RESAGLAFSTLFK 1994 (2629)
Q Consensus 1982 R~~A~~al~~l~~ 1994 (2629)
+..|.++.+.+..
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=385.51 Aligned_cols=745 Identities=12% Similarity=0.128 Sum_probs=562.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCC--ChhHHH-HHHHHHhc-cc------------ccc-CCh
Q 000049 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQT-TF------------VNT-VDA 1571 (2629)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~~r~-al~~L~~~-~~------------~~~-~~~ 1571 (2629)
.++++.+|..|.+.|.++.+. ....+.+.+...+.+. +..+|. |...+... .. ... ++.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~ 90 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH
Confidence 677889999999999887542 1234455566665543 456673 33333221 00 121 455
Q ss_pred hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhh
Q 000049 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1572 ~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l~~~~ 1650 (2629)
.....+.+.+...+.+.+..+|..++++++.++.... + ...++.++|.+...+.++ ++.+|..+..+++.+.+.+
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~-p---~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL-P---HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-G---GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC-c---ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 5666778888888999899999999999999987521 1 114678999999999988 9999999999999999877
Q ss_pred CCC------CchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChh-----HHHhHhHHHHHhhcCCChhhHHHHHH
Q 000049 1651 GEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLT 1718 (2629)
Q Consensus 1651 g~~------~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~a~~ 1718 (2629)
+++ +...+++.+...+.+++ +..+|..++.+++.++..++.. ....+++.+.+.+.+.++.+|..++.
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 654 34567777777777653 5668988988888875433321 12457777778888899999999999
Q ss_pred HHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh--------------------hchhhhHH
Q 000049 1719 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLLL 1777 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~--------------------~~~i~~ll 1777 (2629)
++..++...+..|.+|+. .+++.+...+.|.++.+|..+++.+..++.... ...+..++
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999888876531 11234466
Q ss_pred HHHhhccC-------CCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHH
Q 000049 1778 PAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2629)
Q Consensus 1778 p~l~~~l~-------d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~ 1850 (2629)
|.+...+. |++|.+|..+.+.++.+... +|.+....+++.+.
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l~ 375 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFVE 375 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHHH
Confidence 66655543 34577888777777766432 22223344555555
Q ss_pred hhccCccHHHHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----chhhhH
Q 000049 1851 MVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPSI 1924 (2629)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~-----~~l~~l 1924 (2629)
..+.+.++.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..+..+++.++...+. ...+.+
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 55678889999999999999998764 778889999999999999999999999999999999988764 357888
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhhc---hhhHHHhHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhChh
Q 000049 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQ 1999 (2629)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~aL~~li~~~~---~~~l~~~l~~ll~~l~~~L~--d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2629)
+|.+...+.++ +.+|..+|.+++.++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....|..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 99998888876 9999999999999988776 36678999999999999997 445889999999999999888764
Q ss_pred ---hhhhhHHHHHHhccCcCc------hhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhh
Q 000049 2000 ---AIDEIVPTLLHALEDDQT------SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070 (2629)
Q Consensus 2000 ---~~~~ilp~Ll~~L~~~~~------~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~ 2070 (2629)
.+..++|.+++.+.+... ....-+... .+......+++.+....|..+.+
T Consensus 535 ~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ---------------------ELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH---------------------HHHHHHHHHHHHHHHHCGGGTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHH---------------------HHHHHHHHHHHHHHHHhhhhhHH
Confidence 244556666655532100 000000000 01112456778888888888999
Q ss_pred hHhhhHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhh
Q 000049 2071 HLGTILPALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2629)
Q Consensus 2071 ~l~~il~~Ll~~L~~~~~-~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~ 2146 (2629)
|++.+++.++..+.+.+. .+|+.+..+++.++...+. +++..+++.+...++++++.+|..++.+++.++...+..
T Consensus 594 ~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh
Confidence 999999999999987766 8999999999988877654 457888999999998888999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccc---ccchHHHHHHHHhhhhhhhhhhhcCCcccccCC
Q 000049 2147 LVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221 (2629)
Q Consensus 2147 ~~~~~~~il~~Ll~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~---l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~ 2221 (2629)
+.+|.+.+++.++..+++++ ..+|..+..+++.++...+... ++.+++.+.+.+... ++.
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~---------------~~~ 738 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK---------------PEN 738 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC---------------CSS
T ss_pred ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC---------------CCC
Confidence 99999999999999998764 8899999999999988765543 222222222222110 000
Q ss_pred CCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC--hhhhhhchhhhhHHHHHHhcCC--C-CHhHHHHHHHHH
Q 000049 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR--F-PWQVKSAILSTL 2296 (2629)
Q Consensus 2222 ~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~~~--~-~~~vk~~al~~L 2296 (2629)
+ ..-.. .....+|..++.+++.++...+ +..+.||+..++..+.+.+.+. . ++.+|.+++.++
T Consensus 739 ----~-d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l 806 (861)
T 2bpt_A 739 ----G-TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLI 806 (861)
T ss_dssp ----S-SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHH
T ss_pred ----C-ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 0 00000 0013578899999999998887 3569999999999998888763 2 789999999999
Q ss_pred HHHHHhc-CCCccCchH-HHHHHHHHHcCC---CCHHHHHHHHHHHHHHH
Q 000049 2297 SIIIRKG-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2297 ~~L~~~~-~~~l~p~lp-~L~~~~~k~L~d---~~~~vR~~Aa~aLg~l~ 2341 (2629)
+.++..+ |..+.+|++ ++.+.+++.+.. .+..++..|..+++.+.
T Consensus 807 ~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 807 GDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 9999999 889999999 999999998873 47789999999998874
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=391.97 Aligned_cols=740 Identities=15% Similarity=0.162 Sum_probs=552.9
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCC--ChhHHH-HHHHHHh---c----------ccccc
Q 000049 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQ---T----------TFVNT 1568 (2629)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~~r~-al~~L~~---~----------~~~~~ 1568 (2629)
+..+.++++.+|..|...|.++... ....+.+.|+..+.++ +..+|. |...+.. . .....
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345677999999999999887642 2345666666666553 456673 2222211 0 01123
Q ss_pred CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000049 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l 1646 (2629)
+.......+.+.+.+.+.+.+..+ ..++++++.++.... ...+++.++|.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 555566677777888888877778 889999999987531 1245788999999999998 999999999999999
Q ss_pred HhhhCC----CCchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChhH----H-HhHhHHHHHhhcCCChhhHHHH
Q 000049 1647 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVY----F-EHILPDIIRNCSHQRASVRDGY 1716 (2629)
Q Consensus 1647 ~~~~g~----~~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~~----l-~~llp~l~~~l~~~~~~vR~~a 1716 (2629)
+..++. .+.+.+++.+...+.+++ +..+|..++.+++.++..++... + ..+++.+.+.+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987642 356778888888887663 46688899999988876554321 1 2467777777888899999999
Q ss_pred HHHHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh------------------------c
Q 000049 1717 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT------------------------T 1771 (2629)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~------------------------~ 1771 (2629)
+.++..++...+..|.||+. .+++.++..+.+.++.+|..+++.+..+++.... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999888877654210 0
Q ss_pred hhhhHHHHHhhccC-------CCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHH
Q 000049 1772 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~-------d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~ 1844 (2629)
.+..++|.+.+.+. |++|++|.++..+++.+... +|.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-------------------------------~~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-------------------------------CEDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-------------------------------HGGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-------------------------------CcHhhHHH
Confidence 12345555544432 45677777777777666432 22223344
Q ss_pred HHHHHHhhccCccHHHHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000049 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1918 (2629)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~----- 1918 (2629)
+++.+...+.|.++.+|.+|+.+++.++.+.+ ..+.++++.+++.++..+.++++.+|..|+.+++.++...+.
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 55655566788999999999999999998765 667789999999999999999999999999999999998764
Q ss_pred chhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc-------------hhhHHHhHHHHHHHHHHHhcCC---cHHHH
Q 000049 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1982 (2629)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~d~---d~~VR 1982 (2629)
..++.+++.+...+.++ +.+|..++.+++.++...+ ...+.+|++.++|.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 35778888888888885 8999999999999887654 1346789999999999998865 35789
Q ss_pred HHHHHHHHHHHHHhChhh---hhhhHHHHHHhccCc---------CchhHHHHHHHHHHhhhccCcCcccchhhhcCCCc
Q 000049 1983 ESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2629)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~---------~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2629)
..+.++++.+....|... ...++|.+++.+... +.+......+ .
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~------------------------~ 581 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDL------------------------Q 581 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHH------------------------H
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHH------------------------H
Confidence 999999999998887532 334555555444320 0000000000 0
Q ss_pred hhHHHHHHHHHHHhC-CChhhhHhhhHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhcCCC
Q 000049 2051 AFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN 2124 (2629)
Q Consensus 2051 ~~~~~aL~~La~~~g-~~l~~~l~~il~~Ll~~L~~~~--~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~d~ 2124 (2629)
.....+++.+....| ..+.+|++.++|.+++.+.+.. +.+|+.+..+++.++...+. +++..+++.+...+.+.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 123456677777778 8899999999999999997764 47899999999988876543 56788899998888776
Q ss_pred -ChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHh
Q 000049 2125 -QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2629)
Q Consensus 2125 -~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~ 2201 (2629)
++.+|..++.+++.++...+..+.+|.+.+++.++..+.+ .+..++..+..+++.++...+.+..+ +
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~-~--------- 731 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK-Y--------- 731 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG-G---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH-H---------
Confidence 8999999999999999888888999999999999999986 46789999999999998766544222 1
Q ss_pred hhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhhcCh--------
Q 000049 2202 TSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-----------SAELREQAALGLGELIEVTSE-------- 2262 (2629)
Q Consensus 2202 ~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~-----------~~~~r~~aa~~L~~l~~~~~~-------- 2262 (2629)
+..++|.+.+.+... ...+|..+..+++.++...+.
T Consensus 732 -------------------------l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~ 786 (876)
T 1qgr_A 732 -------------------------LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPD 786 (876)
T ss_dssp -------------------------HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGG
T ss_pred -------------------------HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccch
Confidence 122223332222211 126788888999988877653
Q ss_pred -hhhhhchhhhhHHHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCC-CccCc-hHHHHHHHHH-HcCCCCHHHHHHHHHHH
Q 000049 2263 -QSLKEFVIPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALAL 2337 (2629)
Q Consensus 2263 -~~l~p~v~~i~~~Li~~l~~~~-~~~vk~~al~~L~~L~~~~~~-~l~p~-lp~L~~~~~k-~L~d~~~~vR~~Aa~aL 2337 (2629)
..+.||++.+++.+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++
T Consensus 787 ~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 787 VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp GGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHH
Confidence 4688999999877766666543 679999999999999999988 78887 5678888888 89999999999999999
Q ss_pred HHHHhcc
Q 000049 2338 GKLSALS 2344 (2629)
Q Consensus 2338 g~l~~~~ 2344 (2629)
|.+..+.
T Consensus 867 ~~~~~~~ 873 (876)
T 1qgr_A 867 KELRKLK 873 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9997654
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=379.19 Aligned_cols=722 Identities=15% Similarity=0.166 Sum_probs=558.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHh--ccccccCChhhhhhHHHHHHHh
Q 000049 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQ--TTFVNTVDAPSLALLVPIVHRG 1584 (2629)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~--~~~~~~~~~~~l~~i~p~L~~~ 1584 (2629)
..++++.+|+.|.+.|.++-. +|.+...+-.++..+.+.+..+|. |.-.+-. ......+++.....+.+.+.+.
T Consensus 22 ~~s~d~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 22 SQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HTCSCHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HhCcCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 357799999999999987743 566655555555555566677884 3222221 0222345666777889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--------Cch
Q 000049 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFP 1656 (2629)
Q Consensus 1585 L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~--------~~~ 1656 (2629)
+.+.+..+|..++.+++.++... . ....+.+++.+...+.++++.+|..+..+++.+++..++. .+.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-C----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 99999999999999999998852 2 2357889999999999999999999999999999887643 256
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHh
Q 000049 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p 1733 (2629)
.++|.+++.+.+. +..+|..++.+++.++...+.. .++.+++.+.+.+.++++.+|..++.+|+.++...+..+.|
T Consensus 174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 7788888777654 5668999999998777654433 24678889999899999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----hhhchhhhHHHHHhhccC-----------C-----------
Q 000049 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N----------- 1786 (2629)
Q Consensus 1734 ~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~-----~~~~~i~~llp~l~~~l~-----------d----------- 1786 (2629)
|++.+++.++..+.|.++.||..|++.+..+++. +-...+..++|.+...+. |
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 9999999999999999999999999988877542 122345567777766552 2
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHH
Q 000049 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2629)
Q Consensus 1787 ~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~ 1866 (2629)
.+|.+|.++...++.+. ..+|.+....+++.+...+.|.++.+|.+|+.
T Consensus 333 ~~~~vr~~a~~~L~~la-------------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLA-------------------------------NVYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp CCCCHHHHHHHHHHHHH-------------------------------HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45666666666666554 22333334455565555667889999999999
Q ss_pred HHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCChhHHHH
Q 000049 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQG 1942 (2629)
Q Consensus 1867 ~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~ 1942 (2629)
+++.++.+.+..+.++++.+++.++..+.++++.+|..++.+++.+....+. .....+++.+...+.++++.+|..
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999988888899999999999999999999999999999999987653 356788888999999999999999
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----hhhhhHHHHHHhc---cC
Q 000049 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----AIDEIVPTLLHAL---ED 2014 (2629)
Q Consensus 1943 a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-----~~~~ilp~Ll~~L---~~ 2014 (2629)
++.+++.++..++.. +.+|++.+++.+...+.+.+......+..+++.+....|.. .++.++|.+++.+ .+
T Consensus 462 a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d 540 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 540 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccc
Confidence 999999998877654 78899999999999998887777777888999998877753 3445555555322 22
Q ss_pred cCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcC----------
Q 000049 2015 DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG---------- 2084 (2629)
Q Consensus 2015 ~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~---------- 2084 (2629)
++.. . .....+++.++...|..+.||++.+++.+++.+.
T Consensus 541 ~~~~------------------------------~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~ 589 (852)
T 4fdd_A 541 EDKD------------------------------L-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 589 (852)
T ss_dssp TCTT------------------------------H-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHH------------------------------H-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1110 0 0234677888888899999999998887665542
Q ss_pred -------CCCHHHHHHHHHHHHHHHhhccccc---H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHH
Q 000049 2085 -------DDDMDVQSLAKEAAETVTLVIDEEG---V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP 2152 (2629)
Q Consensus 2085 -------~~~~~vr~~a~~al~~l~~~~~~~~---~--~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~ 2152 (2629)
.++.+++..+..+++.++...+.+. + ..+++.++..+.+.++.+|..+..+++.++...+..+.+|++
T Consensus 590 ~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~ 669 (852)
T 4fdd_A 590 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA 669 (852)
T ss_dssp HCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred cCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2256688888899999988776432 2 457888899899989999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHH
Q 000049 2153 NMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232 (2629)
Q Consensus 2153 ~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp 2232 (2629)
.+++.+...+++.+..++.+|..+++.++...+.+.. .++..+++
T Consensus 670 ~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~-----------------------------------p~~~~il~ 714 (852)
T 4fdd_A 670 DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ-----------------------------------PYIPMVLH 714 (852)
T ss_dssp HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG-----------------------------------GGTHHHHH
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHH-----------------------------------HHHHHHHH
Confidence 9999999999888899999999999998765533211 23445666
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCc
Q 000049 2233 IFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310 (2629)
Q Consensus 2233 ~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~ 2310 (2629)
.+...+.+. ...+++.++.++|+++...+ +.+.||++++++++.+.+....+.+.|..++.+|+.++..-|..+.+.
T Consensus 715 ~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~-~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~ 793 (852)
T 4fdd_A 715 QLVEIINRPNTPKTLLENTAITIGRLGYVCP-QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD 793 (852)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHHhCH-HHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHH
Confidence 666666554 45789999999999998854 788999999999999999876677789999999999999988776666
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000049 2311 LPQLQTTFIKCLQDSTRTVRSSAALALG 2338 (2629)
Q Consensus 2311 lp~L~~~~~k~L~d~~~~vR~~Aa~aLg 2338 (2629)
+..+...+ ....+++++++......|.
T Consensus 794 ~~~~~~~~-~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 794 FIFFCDAV-ASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHHHHHHH-HTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCCCCHHHHHHHHHHHH
Confidence 66555543 3344556666655554443
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=389.65 Aligned_cols=733 Identities=16% Similarity=0.189 Sum_probs=559.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-----------
Q 000049 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM----------- 1650 (2629)
Q Consensus 1584 ~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~----------- 1650 (2629)
.+.+.+..+|+.|.+.+..+... ..+.+.+.+...+.+ ..+.+|..|+..|...+...
T Consensus 9 ~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 9 KTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34466789999999999886542 234566666676665 46899999999999876321
Q ss_pred ----CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh-hHHHhHhHHHHHhhcCC--ChhhHHHHHHHHHHh
Q 000049 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYL 1723 (2629)
Q Consensus 1651 ----g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~-~~l~~llp~l~~~l~~~--~~~vR~~a~~~l~~L 1723 (2629)
.++....+.+.+++.+.++... . ..+++.++.++...+. ..+++++|.+.+.+.++ ++.+|.+++.++..+
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~-~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSS-S-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHH-H-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 1112234455577777765544 4 7888999999887655 56889999999999988 899999999999999
Q ss_pred hhhh-ccchHhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc----h-hhhHHHHHhhccCCCchHHHHHH
Q 000049 1724 PRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQSS 1795 (2629)
Q Consensus 1724 ~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~iv~~~~~~----~-i~~llp~l~~~l~d~~~~vR~sa 1795 (2629)
+..+ ++.|.++++.+++.+.+.+.++ +..+|..+++++..++..++.. . .+.+++.+.+.+.+.++++|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9876 4567889999999999999987 6889999999998876543321 1 12467777777888899999999
Q ss_pred HHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcC
Q 000049 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2629)
Q Consensus 1796 ~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~ 1875 (2629)
+++++.++...+.. +...+. ..+++.+.....|.+..||..|++.|..++...
T Consensus 238 ~~~l~~l~~~~~~~-----------------------~~~~~~----~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~ 290 (876)
T 1qgr_A 238 LQNLVKIMSLYYQY-----------------------METYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (876)
T ss_dssp HHHHHHHHHHSGGG-----------------------CHHHHT----TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH-----------------------HHHHHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999987542210 111111 134555555557778899999999999987642
Q ss_pred h---------------------hhHhhhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 000049 1876 P---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2629)
Q Consensus 1876 ~---------------------~~l~~~l~~Ll~~L~~~L~-------~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1927 (2629)
. ...+++++.+++.++..+. +.++..|..|..+++.++...++.+.+.++|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~ 370 (876)
T 1qgr_A 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 370 (876)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHH
Confidence 1 1233456777888887775 34678999999999999999998888999999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-----hhhh
Q 000049 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAID 2002 (2629)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-----~~~~ 2002 (2629)
+...+.++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||..|+.+++.+....+. ..++
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 99999999999999999999998776665667789999999999999999999999999999999987654 3456
Q ss_pred hhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC--------------CCh
Q 000049 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG--------------PGL 2068 (2629)
Q Consensus 2003 ~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g--------------~~l 2068 (2629)
.++|.++..|.++. . +....+.+++.++..++ ..+
T Consensus 451 ~~l~~l~~~l~~~~-~------------------------------v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T 1qgr_A 451 PLLQCLIEGLSAEP-R------------------------------VASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp HHHHHHHHHTTSCH-H------------------------------HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred HHHHHHHHHHcCCH-H------------------------------HHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence 77777777775531 0 01123445555555443 358
Q ss_pred hhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhcC-----------CCC----hh
Q 000049 2069 NFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVG-----------DNQ----AS 2127 (2629)
Q Consensus 2069 ~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~-----------d~~----~~ 2127 (2629)
.||++.++|.|+..+.+. +..+|..+.++++.++...+. +++..+++.++..+. +++ +.
T Consensus 500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~ 579 (876)
T 1qgr_A 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 899999999999998654 467899999999999987764 335566666665543 222 45
Q ss_pred HHHHHHHHHHHHHHhch-hhhhhhHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhh
Q 000049 2128 IRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204 (2629)
Q Consensus 2128 vR~~a~~~L~~l~~~~~-~~~~~~~~~il~~Ll~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~ 2204 (2629)
+|..++.+++.++...+ .++.+|.+.+++.++..+++.. ..++..+..+++.++...+...
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~---------------- 643 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF---------------- 643 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGG----------------
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhH----------------
Confidence 68899999999999888 8899999999999999998764 4788888888888765432211
Q ss_pred hhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC
Q 000049 2205 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283 (2629)
Q Consensus 2205 ~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~ 2283 (2629)
..++..++|.+...+.+. ++++|..++.+++.++...| ..+.||+..+.+.++..+.+.
T Consensus 644 -------------------~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~ 703 (876)
T 1qgr_A 644 -------------------LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGNE 703 (876)
T ss_dssp -------------------GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCT
T ss_pred -------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCCc
Confidence 134556778888888886 88999999999999999988 679999999999999999762
Q ss_pred -CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHHHhc-c------
Q 000049 2284 -FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-----------RTVRSSAALALGKLSAL-S------ 2344 (2629)
Q Consensus 2284 -~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~-----------~~vR~~Aa~aLg~l~~~-~------ 2344 (2629)
.+.++|..++.+++.++..+|..+.+|+|.+.+.+.+.+.+.. ..+|..+..+++.++.. .
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred cccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3578999999999999999999999999999999999887542 27999999999877432 1
Q ss_pred ----CChhHHHHHHHHhh----hcC--CHHHHHHHHHHHHHHHhhcCC-CcChHH-HHHHHHHHHH-hhcCCCHHHHHHH
Q 000049 2345 ----TRVDPLVGDLLSSL----QVS--DAGIREAILTALKGVLKHAGK-SVSSAV-KIRVYSVLKD-LVYHDDDHVRVSA 2411 (2629)
Q Consensus 2345 ----~~~~~ll~~Ll~~l----~~~--d~~vr~~~l~AL~~vi~~~g~-~~~~~~-~~~i~~~L~~-~l~~~~~~vr~~a 2411 (2629)
+.+.++++.++..+ .++ +..+|..++.+|+.++...|. .+ .++ .+.++..+.. .+.++++.+|.+|
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 23556666666554 455 689999999999999998877 54 344 4455655555 8889999999999
Q ss_pred HHHHHHHHhcC
Q 000049 2412 ASILGIMSQCM 2422 (2629)
Q Consensus 2412 a~~Lg~L~~~~ 2422 (2629)
+.++|.+.+..
T Consensus 863 ~~a~~~~~~~~ 873 (876)
T 1qgr_A 863 RWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988643
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=370.17 Aligned_cols=565 Identities=18% Similarity=0.217 Sum_probs=443.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
..+..+++.+.+ +++..|..|+..|+.++..+|+.... ..+++.|.+.+ ++ ++.+|..+..+++.+....+. ..
T Consensus 10 ~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~-~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~ 83 (588)
T 1b3u_A 10 YPIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PE 83 (588)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GG
T ss_pred CcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HH
Confidence 346677777764 46899999999999999888765543 36888888776 43 788998888888776665543 24
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
+...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.+...+++|..|..++.+++.++...+..
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 5667888888888999999999999999999998887765 456666666666778899999999999988766543
Q ss_pred hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchh-HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhh
Q 000049 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2629)
..+.++|.+..+++|+++.||.+|+++|+.+++.++.+. ...+
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l------------------------------------ 204 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI------------------------------------ 204 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH------------------------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHH------------------------------------
Confidence 346788999999999999999999999999998766422 2333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~ 1654 (2629)
+|.+...+.|.++.+|..+..+++.++...+. ..+.+.++|.+...+.|++|.||..++.+++.++...|++.
T Consensus 205 ---~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~ 277 (588)
T 1b3u_A 205 ---IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI 277 (588)
T ss_dssp ---HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH
T ss_pred ---HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc
Confidence 44444555555667777777777777665432 12445677777777788888888888888888887776542
Q ss_pred -chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh-----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhc
Q 000049 1655 -FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2629)
Q Consensus 1655 -~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g 1728 (2629)
...++|.+...+.++ ...+|..++.+++.++..+|.+ +++.++|.+...+.++++.+|..++.+++.++..+|
T Consensus 278 ~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp HHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred chhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 356677777766544 3557777888888888777654 457788888888999999999999999999999988
Q ss_pred cchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhc
Q 000049 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807 (2629)
Q Consensus 1729 ~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~ 1807 (2629)
... +.+.++|.+...+.|++++||..+..++..+...++.. ..+.++|.+...+.|.+|++|..+++.++.+...+
T Consensus 357 ~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~- 433 (588)
T 1b3u_A 357 KDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL- 433 (588)
T ss_dssp HHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-
T ss_pred HhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHc-
Confidence 743 45678899999999999999999999999998877654 34668999999999999999999999998876432
Q ss_pred CCCccccccCCCCCCcccHHHHHHHHHHHhchhh-HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHH
Q 000049 1808 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886 (2629)
Q Consensus 1808 ~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~L 1886 (2629)
|.+. .+.+++.+...+.|.+..||..|+.+++.++...+.. .+++.+
T Consensus 434 ------------------------------~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~l 481 (588)
T 1b3u_A 434 ------------------------------GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATI 481 (588)
T ss_dssp ------------------------------CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHT
T ss_pred ------------------------------CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHH
Confidence 2211 1245666666788999999999999999998866543 346778
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHH
Q 000049 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2629)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2629)
+|.+...+.++++.+|..+..+++.++..+|.. +.+.++|.+...++|+++++|..++.+++.+....+.... .+.
T Consensus 482 lp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~ 558 (588)
T 1b3u_A 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSE 558 (588)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHH
Confidence 888888888999999999999999999988765 5788999999999999999999999999999877765432 257
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000049 1966 LIPTIRTALCDSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1966 ll~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2629)
++|.+...+.|+|++||..|..+++.+
T Consensus 559 ~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 559 VKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 788888888999999999999999865
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-29 Score=345.64 Aligned_cols=566 Identities=18% Similarity=0.223 Sum_probs=446.9
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
+..++..+.++++.+|..|.+++..++..++.. .... ++|
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~---------------------------------------l~~ 52 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSE---------------------------------------LLP 52 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHT---------------------------------------HHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHH---------------------------------------HHH
Confidence 456778889999999999999998887655421 1233 344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhh
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDL 1658 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-~~l 1658 (2629)
.+.... +.++++|..+...++.++..++. ..|...+++.+...+.|+++.||..|..+++.++...+++.. ..+
T Consensus 53 ~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l 127 (588)
T 1b3u_A 53 FLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127 (588)
T ss_dssp HHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH
T ss_pred HHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 444333 44567888888888877765443 246677888888888889999999999999999987775432 345
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~i 1738 (2629)
+|.+..... ++....|..++..++.+....+....+.++|.+.+.+.++++.+|..++.+++.++..+|.. .+.+.+
T Consensus 128 ~~~l~~l~~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l 204 (588)
T 1b3u_A 128 VPLVKRLAG-GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEI 204 (588)
T ss_dssp HHHHHHHHT-CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTH
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHH
Confidence 565544444 34566788888888888888877667888999999999999999999999999999988873 466789
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000049 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2629)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~ 1817 (2629)
+|.+...+.|++..||..|..++..+....+.. ..+.++|.+...+.|++|++|..+++.+|.+....
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----------- 273 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV----------- 273 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH-----------
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999988877654 34568888888889999999999999999886432
Q ss_pred CCCCCcccHHHHHHHHHHHhchh-hHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHh--hhHHHHHHHHHHHh
Q 000049 1818 GSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EIMPVLMNTLISSL 1894 (2629)
Q Consensus 1818 ~~ede~~~~~~~~~~l~~~Lg~e-~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~~l~~Ll~~L~~~L 1894 (2629)
|.+ ....+++.+...+.|.++.||..|...++.++...+.... .+++.+++.+...+
T Consensus 274 --------------------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 274 --------------------GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333 (588)
T ss_dssp --------------------CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred --------------------CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence 111 1223555565667899999999999999999987765432 57788889999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHH
Q 000049 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2629)
Q Consensus 1895 ~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2629)
.++++.+|..++.+++.++..+|.. ..+.++|.+...++|+++++|..++.+++.+....+.+. +.+.++|.+...
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~ 410 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVEL 410 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHH
Confidence 9999999999999999999988866 467889999999999999999999999999887766542 446788888899
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhh-hhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchh
Q 000049 1974 LCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052 (2629)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g~~~~-~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~ 2052 (2629)
+.|+++++|..++.+++.+...+|...+ +.++|.++..|.++... ++..
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~------------------------------Vr~~ 460 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA------------------------------IREA 460 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH------------------------------HHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH------------------------------HHHH
Confidence 9999999999999999999998887654 45678888777665421 1112
Q ss_pred HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHhhcCCCChhHHHH
Q 000049 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRS 2131 (2629)
Q Consensus 2053 ~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~d~~~~vR~~ 2131 (2629)
+..+++.++..+|.. .+++.++|.+.+.+.+++..+|..+..+++.+...++. .....+++.+...+.|+++.+|..
T Consensus 461 a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 345666666666653 35688999999888889999999999999999887654 346788999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000049 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2629)
Q Consensus 2132 a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~ 2181 (2629)
++.+++.++...+.++.. +.+++.+..+++|.|.+||..|..|++.+.
T Consensus 539 a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHGGGSCHHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhchhhhH--HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 999999999876654422 467777777889999999999999998763
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=269.77 Aligned_cols=311 Identities=26% Similarity=0.475 Sum_probs=281.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--cCc
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLF 1414 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~--~~~ 1414 (2629)
..++.+++.+..++ ...|+.++..++.++.+-+........+++.+.+.+.++++. ++|+.++..+++..+ ..+
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCc
Confidence 34455666665544 567899999999998865433332347889999999887655 999999999997665 468
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCchhh
Q 000049 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
+||+..++|.++..++|....||++|..++..++..++++.++.++|.++..|.+. .|+.|.+++.+++.++..+|+++
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999765 69999999999999999999999
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~ 1573 (2629)
..++|+++|.+.+++.|.+++|+.+|..++..++..+.|.++..++|.|++++.+| +.+.+|++.|..++|+..++.|.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHH
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999 45889999999999999999999
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCC
Q 000049 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
++.++|.|.++|.+++..+++.++-++.|||+++.+|.+..||++.++|.+.+.... .+|++|+.+.+++..+.+..+.
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999998764 6899999999999999886554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-18 Score=249.71 Aligned_cols=645 Identities=12% Similarity=0.121 Sum_probs=402.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcC--C
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~--~ 1126 (2629)
+++.++|.+++|||+.+| |+++|++... .|.....+..+.. ..+.+..+|.+|. ..|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-----~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLET-----QDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHT-----STTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhc-----CCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468889999999999999 9999987631 1333333334332 2334566777764 4586321 1
Q ss_pred CCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000049 1127 DFGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2629)
Q Consensus 1127 ~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 1200 (2629)
.++++ + ..+++.+.+++..+|++++++++.++. .||+.|++++..+.+.. .. .+...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SN------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CS------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CC------CCHHHHHHHHHH
Confidence 23322 4 678888888889999999999999876 58888888888887652 11 122578899999
Q ss_pred HHHhhhhcCC---C-Ch-h-----------HHHHHHH--hhhcCCCcH---HHH--HHHHHHHHHHHHhh---C-----c
Q 000049 1201 LHSAADVLRT---K-DL-P-----------VIMTFLI--SRALADTNA---DVR--GRMLNAGIMIIDKH---G-----R 1249 (2629)
Q Consensus 1201 l~~l~~~~~~---~-~~-~-----------~i~~~li--~~~l~d~~~---~Vr--~~~~~a~~~~i~~~---g-----~ 1249 (2629)
+..+++.+.. . +. . .++..+. .+++.+... .+| ..++.++..++... + .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999886542 1 10 1 1112221 122444322 244 12222222222211 1 1
Q ss_pred cchhhhHHHHHHHhcccCC--Ch-------hhhhhHHHHHHHHHHHHHhhh-ccCCCcchhhHHHHHhhcC-----CCcH
Q 000049 1250 DNVSLLFPIFENYLNKKAS--DE-------EKYDLVREGVVIFTGALAKHL-AKDDPKVHAVVDKLLDVLN-----TPSE 1314 (2629)
Q Consensus 1250 ~~~~~Ll~~~~~~l~~~~~--~~-------~~~~~vr~~~v~~~~~La~~l-~~~~~~l~~i~~~L~~~L~-----~~~~ 1314 (2629)
+++...++.|...+....+ .. .....+|..++..+..+...+ +.-.++++.+++.+++.+. ...+
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 3455667777777754211 00 122346666666666665432 2224566777777776664 3345
Q ss_pred HHHHHHHHhhhhhHhhhc--cch--HHHHHHHH-----HHhh----------------------cCCCHHHHHHHHHHHH
Q 000049 1315 AVQRAVSSCLSPLMQSMQ--DEA--PTLVSRLL-----DQLM----------------------KSDKYGERRGAAFGLA 1363 (2629)
Q Consensus 1315 ~Vq~~~~~~L~~l~~~~~--~~~--~~ll~~ll-----~~L~----------------------~~~~~~~R~~Aa~~L~ 1363 (2629)
.+...+.+.+..++..-. ... ...++.++ ..+. .++.+..|+.|..+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 666555555544432110 000 12222222 2221 1223578999999999
Q ss_pred HHHhhhCcchhhhhcHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHh-----c-c------CchhHHHHHHHHHH
Q 000049 1364 GVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKL-----G-R------LFEPYVIQMLPLLL 1426 (2629)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~l~-----~~~~~~~R~~Al~al~~La~~~-----~-~------~~~~~v~~ilp~ll 1426 (2629)
.++...|...+. .+++++.+.+. ...+|+.|++|+++++.++++. + . .+.+++ ...++
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l---~~~v~ 461 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF---TKEIA 461 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH---HHHTH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH---HHHhH
Confidence 999988854443 57788777775 1237999999999999998742 1 1 233332 23344
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhh-----------Cchh
Q 000049 1427 VAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQ 1492 (2629)
Q Consensus 1427 ~~l~D~---~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~-----------~p~~ 1492 (2629)
..+.|+ ++.||.+++.+++.+.+.+.+.....++|.++..|.+++.+++..|+.+|..+++. .+..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 455666 99999999999999999888777899999999999988899999999999998873 2456
Q ss_pred hhhhccchHHHHhhhhcCCC---HH--HHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000049 1493 LSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2629)
Q Consensus 1493 l~~~L~~ivp~L~~~L~D~~---~~--VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2629)
+.++++.+++.++.+++... +. ....+..|++.++...++ |++..+++.+...+.
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~----------------- 604 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT----------------- 604 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH-----------------
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------------
Confidence 88899999999999887641 12 346778888887776553 444445544443321
Q ss_pred ccccCChhhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
...+ ..+...+..++++++.++.. ..++.+.++.+.++|.+...+.....+....+...+
T Consensus 605 ------------------~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 605 ------------------IMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp ------------------HHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred ------------------HHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 1111 12445666788888888876 344567888999999999999877778888899999
Q ss_pred HHHHhhhC--CCCchhhHHHHH--HHhccCCChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHHHhhcCCChhhHHHHH
Q 000049 1644 GSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1644 ~~l~~~~g--~~~~~~ll~~Ll--~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
+.+..... .+++..++|.+. ..+.... ........+..++...+.... +.++..+.+.+.+.. .++.++
T Consensus 666 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~ 740 (960)
T 1wa5_C 666 AFVVEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGF 740 (960)
T ss_dssp HHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHH
Confidence 98887652 125566777776 4444332 112233344444433332211 222222223333333 358899
Q ss_pred HHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHHHH
Q 000049 1718 TLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1765 (2629)
Q Consensus 1718 ~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~-~~~VR~~al~al~~iv 1765 (2629)
.+++.++..+|.. |.||++.+++.+++.+... .+..+...+..+..++
T Consensus 741 ~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 741 DLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999999999988 9999999999999998765 3455544444444443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-16 Score=231.87 Aligned_cols=725 Identities=14% Similarity=0.156 Sum_probs=437.0
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCCC
Q 000049 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYD 1127 (2629)
Q Consensus 1057 ~~~~~ll~~-~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~~ 1127 (2629)
+++.++|++ ..++|+..|++|++.|++.... |....+...+ ...+.+..+|.+|. ..|...+.+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQL--LQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHH--hcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 457778888 4568999999999999876421 2222233332 22355666676654 347655433
Q ss_pred CCCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 000049 1128 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202 (2629)
Q Consensus 1128 ~~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~ 1202 (2629)
-++.+ ..+++.+.+ ....+|++.+.+++.++. .||+.|++.+..+.+... ...+. ..+...+......|.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~----~~~~~-~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQ----AEDSP-VDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHC----C-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHh----hhccC-CCcHHHHHHHHHHHH
Confidence 33335 667776654 368999999999999865 688888888888887642 10000 001135667777777
Q ss_pred HhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHH
Q 000049 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2629)
Q Consensus 1203 ~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~ 1282 (2629)
.+++.+..... ...|... ++..=....+.+++++...+..... ...++..++.
T Consensus 172 ~l~ee~~~~~~----------------~~~~r~~-------~~~~l~~~~~~i~~ll~~~l~~~~~----~~~~~~~~l~ 224 (963)
T 2x19_B 172 VLPEEFQTSRL----------------PQYRKGL-------VRTSLAVECGAVFPLLEQLLQQPSS----PSCVRQKVLK 224 (963)
T ss_dssp HHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTC----CHHHHHHHHH
T ss_pred hCHHHHhcccC----------------cHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCC----chHHHHHHHH
Confidence 77653321111 0001000 0100012455677777777754221 1225555544
Q ss_pred HHHHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhc-cchHHHHHHHHHHhh----------cCCC
Q 000049 1283 FTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSDK 1351 (2629)
Q Consensus 1283 ~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~-~~~~~ll~~ll~~L~----------~~~~ 1351 (2629)
.+....+ ++........+++.+.+.+. .++++..+.+|+..++.... ......+..++..+. ..+|
T Consensus 225 ~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 225 CFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 4433222 21111112567777777775 45688888899888875321 111222222222111 1123
Q ss_pred HHHHHHHHHHHHHHHhhhCc---------chhhhhcHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHh--------
Q 000049 1352 YGERRGAAFGLAGVVKGFGI---------SSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL-------- 1410 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~---------~~l~~~~i~~~L~~~l~~----~~~~~~R~~Al~al~~La~~~-------- 1410 (2629)
.......+..+..++..... ..+. .+++.+.++..+ ..+...+..++..+..+++..
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 379 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQ 379 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 33444444555544432111 1111 455556555553 123445556666666666532
Q ss_pred ---ccCchhHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhh----c
Q 000049 1411 ---GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----E 1468 (2629)
Q Consensus 1411 ---~~~~~~~v~~ilp~ll~~l~D~~~---------------~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L----~ 1468 (2629)
...+.|++.++++.++..+.-++. ..|.++.+++..+........+..+++.+.+.+ .
T Consensus 380 ~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 459 (963)
T 2x19_B 380 AVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEE 459 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCC
Confidence 134567888888888887743221 236677778888877777666666777666666 6
Q ss_pred cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCC
Q 000049 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTD 1548 (2629)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d 1548 (2629)
+.+|+.+.+++.+++.++++........++.+++.+.. +.++++.||..++++++++++.+...
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~--------------- 523 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADH--------------- 523 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHC---------------
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 67999999999999999998766555667777775544 34468999999999999998765311
Q ss_pred CChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHh
Q 000049 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2629)
Q Consensus 1549 ~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2629)
...+..+++.+..++.+ +.++..|+.++.+++.... +.+.||++.++..+...+
T Consensus 524 ----------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 524 ----------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp ----------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHh
Confidence 01233345555555544 5788889999999997543 468899999999999988
Q ss_pred cC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----cCCChHHHH---HHHHHHHHHHHhhCh----
Q 000049 1629 VD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SDNSNVERS---GAAQGLSEVLAALGT---- 1691 (2629)
Q Consensus 1629 ~d--~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~----~~~~~~~R~---~a~~~L~~i~~~~g~---- 1691 (2629)
.. -....|..+.+++|.++...+++ ++..+++.+...+. +..+...+. ....+++.+++.++.
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 657 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHE 657 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 85 35789999999999999877622 45566655555443 221222232 455667777777652
Q ss_pred -----------------h----HHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCC
Q 000049 1692 -----------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2629)
Q Consensus 1692 -----------------~----~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2629)
+ .++.++|.+.+.+.. .+..+.+.++.++..++..+|..|.||++.+++.++.....
T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 658 DDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST 737 (963)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence 1 235566666655432 46789999999999999999999999999999888776543
Q ss_pred CChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhc-------cCCCchHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000049 1749 ENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDG-------IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2629)
Q Consensus 1749 ~~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~-------l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~ 1816 (2629)
... ...+..+..++..++.. .+..++..+... ..++...+|.+...+++.++...+...
T Consensus 738 ~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~------ 808 (963)
T 2x19_B 738 IPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF------ 808 (963)
T ss_dssp SCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG------
T ss_pred CCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH------
Confidence 211 12445556666644332 222222222211 122356688889999988886654221
Q ss_pred CCCCCCcccHHHHHHHHHHHhchhh-HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh--hh----HhhhHHHHHHH
Q 000049 1817 GGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP--KT----LKEIMPVLMNT 1889 (2629)
Q Consensus 1817 ~~~ede~~~~~~~~~~l~~~Lg~e~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~--~~----l~~~l~~Ll~~ 1889 (2629)
+.... +..++..+..++...+..+..++++.|..++...+ .. +.++.+.++..
T Consensus 809 --------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 868 (963)
T 2x19_B 809 --------------------LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIA 868 (963)
T ss_dssp --------------------GCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHH
T ss_pred --------------------cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 00111 33445555555667778899999999999987543 12 23556677777
Q ss_pred HHHHhcC
Q 000049 1890 LISSLAS 1896 (2629)
Q Consensus 1890 L~~~L~~ 1896 (2629)
++..+.+
T Consensus 869 l~~~l~~ 875 (963)
T 2x19_B 869 VLEAIGG 875 (963)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 7666654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-17 Score=242.31 Aligned_cols=717 Identities=12% Similarity=0.125 Sum_probs=416.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCCCC
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~~~ 1128 (2629)
+++.++|+.+.+||+..|++|++.|++.... |....+...+ ...+.+..+|.+|. ..|...+.+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 4567788888999999999999999887521 2222233332 23355666776654 3476554333
Q ss_pred CCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000049 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2629)
Q Consensus 1129 ~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~ 1203 (2629)
++.+ ..+++.+.+ ....+|++.+++++.++. .|| .|++.+..+.+...... . +.. ++...+......+..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~--~-~~~-~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQR--M-PNV-SADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccc--c-ccC-CCHHHHHHHHHHHHH
Confidence 3335 667776654 368999999999999865 577 88888888877653210 0 000 112366777777777
Q ss_pred hhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCC--ChhhhhhHHHHHH
Q 000049 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2629)
Q Consensus 1204 l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~--~~~~~~~vr~~~v 1281 (2629)
+++.+... . -.++...++..+ ....+.++++|..++..... .+.....++..++
T Consensus 155 l~EEi~~~-----------~-~~~~r~~~~~~l------------~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEAQVI-----------H-TSVKRVVLRAEI------------AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHHHHC-----------C-CSSCHHHHHHHH------------HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHhcc-----------C-cHHHHHHHHHHH------------HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 76432100 0 011111222111 12345566666666643211 1111224666666
Q ss_pred HHHHHHHh--hhccCCCcchhhHHHHHhhc----------------CCCcHHHHHHHHHhhhhhHhhhc-cc----hHHH
Q 000049 1282 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2629)
Q Consensus 1282 ~~~~~La~--~l~~~~~~l~~i~~~L~~~L----------------~~~~~~Vq~~~~~~L~~l~~~~~-~~----~~~l 1338 (2629)
..++.... .++.. ....+++.+.. + .+++++++..+.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 66665555 23222 33456666665 4 12467899999999998886422 11 1233
Q ss_pred HHHHHHHhh------cCCCH---HHHHHHHHHHHHHHhhhCc--------------chhhhhcHHHHHHHHhcC----CC
Q 000049 1339 VSRLLDQLM------KSDKY---GERRGAAFGLAGVVKGFGI--------------SSLKKYGIAATLREGLAD----RN 1391 (2629)
Q Consensus 1339 l~~ll~~L~------~~~~~---~~R~~Aa~~L~~l~~~lg~--------------~~l~~~~i~~~L~~~l~~----~~ 1391 (2629)
++.+++... ..+|. ......+..+..+...... ..+ ..+++.+.++... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~ 365 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPV 365 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCc
Confidence 343333211 12232 4444455555555432110 111 1345555555433 22
Q ss_pred CHHHHHHHHHHHHHHHHHh---------c---cCchhHHHHHHHHHHHHcCCC--------C-------HHHHHHHHHHH
Q 000049 1392 SAKRREGALLAFECLCEKL---------G---RLFEPYVIQMLPLLLVAFSDQ--------V-------VAVREAAECAA 1444 (2629)
Q Consensus 1392 ~~~~R~~Al~al~~La~~~---------~---~~~~~~v~~ilp~ll~~l~D~--------~-------~~VR~aa~~al 1444 (2629)
+..++..++..+..+++.. . ..+.|++..+++.++..+.-+ + ...|.++.+++
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTF 445 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHH
Confidence 4566777777777776632 1 234677888888888876311 1 14677888888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhcc-----CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhh-cCCCHHHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSA 1518 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L-~D~~~~VR~a 1518 (2629)
..++..++...+..+++.+.+.+.+ .+|+.+.+++.+++.++++++......++.+++.+..+. .|+++.||..
T Consensus 446 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 446 MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence 8888877756667777776666654 789999999999999999877766677788888444443 2679999999
Q ss_pred HHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHH
Q 000049 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2629)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~ 1598 (2629)
++++++++++.+... ...+..++|.+..++ + +.++..|+.
T Consensus 526 a~~~l~~~~~~l~~~-------------------------------------~~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 526 ALETMGSYCNWLMEN-------------------------------------PAYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------------------------------HHHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 999999999776521 012233444444455 2 467888999
Q ss_pred HHHHHhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----c
Q 000049 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2629)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~----~ 1668 (2629)
++.++++..+ ..+.||++.++..+...+.. .....+..+.++++.++...+.+ ++..+++.++..+. +
T Consensus 566 al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997643 46889999999999999987 35789999999999999887633 34555555554333 2
Q ss_pred CC-ChHHHHH---HHHHHHHHHHhhCh----------------hHHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhh
Q 000049 1669 DN-SNVERSG---AAQGLSEVLAALGT----------------VYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRS 1726 (2629)
Q Consensus 1669 ~~-~~~~R~~---a~~~L~~i~~~~g~----------------~~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~ 1726 (2629)
.. +...+.. ....++.++..++. ..++.++|.+...+.. .+..+.+.++.+++.++..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 2222333 33445555555442 1245677776666543 3678999999999999999
Q ss_pred hccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhh
Q 000049 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2629)
Q Consensus 1727 ~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~ 1806 (2629)
+|.+|.||++.+++.++..+..... ..++..+..++..++.+. .++....+.+..+.
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~-----------------~~~~~l~~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE-----------------GCKPLMQQLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----------------------HHHHHHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc-----------------chHHHHHHHHHHHH---
Confidence 9999999999999999988765322 224455555554443310 00000000011100
Q ss_pred cCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhh---ccCccHHHHHHHHHHHHHHHhcChhhHh--h
Q 000049 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--E 1881 (2629)
Q Consensus 1807 ~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~---~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~ 1881 (2629)
..++..+..+ ..+..+.+++.....+..+..+.|..+. +
T Consensus 781 ------------------------------------~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~ 824 (971)
T 2x1g_F 781 ------------------------------------QHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT 824 (971)
T ss_dssp ------------------------------------HHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT
T ss_pred ------------------------------------HHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 0011111000 1122467899999999999998887765 6
Q ss_pred h-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000049 1882 I-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2629)
Q Consensus 1882 ~-l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~ 1915 (2629)
. ++.+++..+..+..++......+...+..++..
T Consensus 825 ~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 6 788888888888776666666777788776655
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-15 Score=222.39 Aligned_cols=711 Identities=10% Similarity=0.101 Sum_probs=417.1
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-cC--
Q 000049 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR-- 1209 (2629)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~-~~-- 1209 (2629)
..+|....++|+.+| |.+.+..+ +..|+.+..++..+.+ . ..+-++|..++..|+..... ..
T Consensus 8 ~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~-------~-----~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 8 AKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAS-------T-----NLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 345555567777777 55555444 5667665544433321 0 12236788888888877532 21
Q ss_pred -------CCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHH
Q 000049 1210 -------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2629)
Q Consensus 1210 -------~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~ 1282 (2629)
+++...+-..++ .++.+....||..+..++..+......+.|++++|.+.+.++..+ ...+++++.
T Consensus 73 ~~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL~ 145 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVLT 145 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 122223444443 333334588999999998888877656789999998887775422 235677888
Q ss_pred HHHHHHhhhcc--CCC----c----chhhHH-------HHHhhcCCCcH---HHH------HHHHHhhhhhHhh-hc---
Q 000049 1283 FTGALAKHLAK--DDP----K----VHAVVD-------KLLDVLNTPSE---AVQ------RAVSSCLSPLMQS-MQ--- 1332 (2629)
Q Consensus 1283 ~~~~La~~l~~--~~~----~----l~~i~~-------~L~~~L~~~~~---~Vq------~~~~~~L~~l~~~-~~--- 1332 (2629)
.+..+.+.+.. ..+ . +...++ .+...+.++.. .++ ..+.+++..+... ..
T Consensus 146 ~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 146 VAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 88888775532 111 1 112222 22223554422 122 2344444332210 01
Q ss_pred -cchHHHHHHHHHHhhcC--------C--C----HHHHHHHHHHHHHHHhhhCcchhh-hhcHHHHHHHHhc----CCCC
Q 000049 1333 -DEAPTLVSRLLDQLMKS--------D--K----YGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLA----DRNS 1392 (2629)
Q Consensus 1333 -~~~~~ll~~ll~~L~~~--------~--~----~~~R~~Aa~~L~~l~~~lg~~~l~-~~~i~~~L~~~l~----~~~~ 1392 (2629)
+.....++.++..+... + + +..|+.+..+|..++...+..... -..+++.+.+.+. ...+
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~ 305 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKY 305 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 11233444444444221 0 0 356778888888888655432210 0134444444443 1234
Q ss_pred HHHHHHHHHHHHHHHHHhc--cCch--hHHHHHH-HHHHHHcC-----------------------CCCHHHHHHHHHHH
Q 000049 1393 AKRREGALLAFECLCEKLG--RLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAECAA 1444 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~--~~~~--~~v~~il-p~ll~~l~-----------------------D~~~~VR~aa~~al 1444 (2629)
...+..++..+..+++.-. ..|. +++.+++ +.++..+. +....+|.+|...+
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 5667777777776664221 3444 7888888 66666542 11125788899999
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhc------cCChhhhHHHHHHHHHHHhhC--ch-hhhh--hccchHH----HHhhhhc
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ--CLPKIVP----KLTEVLT 1509 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~------~~~w~~r~~a~~~L~~la~~~--p~-~l~~--~L~~ivp----~L~~~L~ 1509 (2629)
..++...+...+..+++.+.+.+. +.+|+.|.+++.++|.++... +. .... .+.++.+ .+...+.
T Consensus 386 ~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~ 465 (960)
T 1wa5_C 386 KELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT 465 (960)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc
Confidence 999888876666677777766665 678999999999999998632 21 1111 1113322 3455567
Q ss_pred CC---CHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhc
Q 000049 1510 DT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2629)
Q Consensus 1510 D~---~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2629)
|+ ++.||..|+++++++++.+....+.. ++|.+.+++.
T Consensus 466 ~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~L~ 506 (960)
T 1wa5_C 466 SNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATFLQ 506 (960)
T ss_dssp CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHHTT
T ss_pred CCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHHhC
Confidence 77 99999999999999998653222333 3444455555
Q ss_pred CCCHHHHHHHHHHHHHHhhhcC---------CCCcccchHhhhHHHHHHHhcCCC---HH--HHHHHHHHHHHHHhhhCC
Q 000049 1587 ERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---PE--VRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~---------~~~~l~~~l~~ll~~L~~~L~d~~---~~--VR~~A~~aL~~l~~~~g~ 1652 (2629)
+.+..+|..|+.++.+++.... ....+.||++.+++.+..++.... +. ....+..+++.++...++
T Consensus 507 d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~ 586 (960)
T 1wa5_C 507 TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED 586 (960)
T ss_dssp CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH
Confidence 5567889999999999887432 124588999999999999988741 11 446889999999998887
Q ss_pred C---CchhhHHHHHHHhcc----CCChHHHHHHHHHHHHHHHhhChh----HHHhHhHHHHHhhcCCChhhHHHHHHHHH
Q 000049 1653 E---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2629)
Q Consensus 1653 ~---~~~~ll~~Ll~~L~~----~~~~~~R~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~a~~~l~ 1721 (2629)
+ ++..+++.+...+.. ......+...+.+++.++...+++ ..+.++|.+...+........+.++..+.
T Consensus 587 ~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~ 666 (960)
T 1wa5_C 587 SIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIA 666 (960)
T ss_dssp TTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 6 455666666655542 333345556788898888876654 33667788777777666778888888888
Q ss_pred HhhhhhccchHhhHHhHHHHHH--hhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHH
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll--~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll 1799 (2629)
.+.... ..|.+|+..++|.++ ..+.... .+ ....+.+..++...+.. +.. +
T Consensus 667 ~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~------------~~~--~---------- 719 (960)
T 1wa5_C 667 FVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI------------FPD--L---------- 719 (960)
T ss_dssp HHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG------------CSC--S----------
T ss_pred HHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH------------HHH--H----------
Confidence 888766 678889888998888 5555431 22 12223333222211110 000 0
Q ss_pred HHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhh-
Q 000049 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT- 1878 (2629)
Q Consensus 1800 ~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~- 1878 (2629)
+.++..+.....+.. .+..|..+++.++.+.|..
T Consensus 720 -------------------------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~ 754 (960)
T 1wa5_C 720 -------------------------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNR 754 (960)
T ss_dssp -------------------------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHH
T ss_pred -------------------------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHH
Confidence 000110111111221 2367888888889888877
Q ss_pred HhhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhccch-h--------hhHHH----HHhhhcCC-CChhHHHHH
Q 000049 1879 LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERV-L--------PSIIP----ILSRGLKD-PSASRRQGV 1943 (2629)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~-~~~~R~~A~~~L~~lv~~~~~~~-l--------~~llp----~L~~~L~d-~~~~vR~~a 1943 (2629)
+.+|++.+++.++..+... ....+......+..++-..++.. . ..+.. .+...+.. .+..-|.-+
T Consensus 755 ~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~ 834 (960)
T 1wa5_C 755 LRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIA 834 (960)
T ss_dssp HGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHH
Confidence 9999999999999998765 45555455555555444444321 1 11111 22222221 345667777
Q ss_pred HHHHHHHHHhh--chhhHHHhHHHHHHHHHHHhcC
Q 000049 1944 CIGLSEVMASA--GKSQLLSFMDELIPTIRTALCD 1976 (2629)
Q Consensus 1944 ~~aL~~li~~~--~~~~l~~~l~~ll~~l~~~L~d 1976 (2629)
+.+++.++... .+..+.+.+..++..+...+..
T Consensus 835 ~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 835 LIGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 88888776543 1223334555566665555443
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=220.69 Aligned_cols=391 Identities=16% Similarity=0.241 Sum_probs=298.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhh-----------
Q 000049 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRG----------- 1649 (2629)
Q Consensus 1583 ~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~~----------- 1649 (2629)
..+.+.+..+|+.|.+.+..+... + .+.+...+...+.+. .+.+|..|+..|..++..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 344566789999999999886541 1 233455555555543 689999999999998743
Q ss_pred ----hCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh-HHHhHhHHHHHhhcCC--ChhhHHHHHHHHHH
Q 000049 1650 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 1722 (2629)
Q Consensus 1650 ----~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~-~l~~llp~l~~~l~~~--~~~vR~~a~~~l~~ 1722 (2629)
++++....+...++..+.++... . ..++.+++.++...++. .+++++|.+++.+.+. ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 22223344566677777766544 4 77888999998887664 6789999999999888 89999999999999
Q ss_pred hhhhh-ccchHhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhccCCCchHHHHH
Q 000049 1723 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQS 1794 (2629)
Q Consensus 1723 L~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~l~d~~~~vR~s 1794 (2629)
++..+ +..+.+|++.+++.+..++.++ +..||..|++++..++..+... ..+.+++.+.+...+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99877 6667899999999999999998 6899999999998765432211 12346777777788889999999
Q ss_pred HHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHH-HHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1795 a~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~-~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
++++++.+....+... + ++.. .+++.+.....|.+..||..|++.|..++.
T Consensus 237 ~~~~l~~l~~~~~~~~---------------------------~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYM---------------------------E-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGGC---------------------------T-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999998875432110 0 1112 344444445577888999999999999886
Q ss_pred cC---------------------hhhHhhhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhccchhhhHH
Q 000049 1874 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1925 (2629)
Q Consensus 1874 ~~---------------------~~~l~~~l~~Ll~~L~~~L~~-------~~~~~R~~A~~~L~~lv~~~~~~~l~~ll 1925 (2629)
.. ...++++++.++|.++..+.+ .++..|..|..+|+.++...|..+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123345678888888888853 34678999999999999999987889999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----h
Q 000049 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 2000 (2629)
Q Consensus 1926 p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-----~ 2000 (2629)
|.+...++++++.+|.+++.+++.+...+.++.+.++++.++|.+...+.|+++.||..|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999988766555667788999999999999999999999999999999988763 3
Q ss_pred hhhhHHHHHHhc
Q 000049 2001 IDEIVPTLLHAL 2012 (2629)
Q Consensus 2001 ~~~ilp~Ll~~L 2012 (2629)
+++++|.|+..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 455555555444
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-14 Score=203.27 Aligned_cols=746 Identities=14% Similarity=0.121 Sum_probs=440.0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG---- 1649 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~---- 1649 (2629)
..+...+.......+++.|+.|.+.+..+-.. | ...+.+..++. +.++.+|..|+..|...+..
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p--------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS---P--------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T--------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H--------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHh
Confidence 33444444434456788999999999887552 1 12333334443 56789999999999887764
Q ss_pred hCCCCchhhHHHHHHHhccC--CChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC-----CChhhHHHHHHHHHH
Q 000049 1650 MGEENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFKY 1722 (2629)
Q Consensus 1650 ~g~~~~~~ll~~Ll~~L~~~--~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-----~~~~vR~~a~~~l~~ 1722 (2629)
+.++....+-..+++.+... .+..+|...+.+++.++....++.|+++++.+.+.+++ +++..++.++.+|..
T Consensus 93 l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Confidence 23333344445555555442 24668889999999999887666788999999988765 366688899999998
Q ss_pred hhhhh-------------ccchHhhHHhHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhchh--hhHHHHHhhccC
Q 000049 1723 LPRSL-------------GVQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIF 1785 (2629)
Q Consensus 1723 L~~~~-------------g~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~iv~~~~~~~i--~~llp~l~~~l~ 1785 (2629)
++... ...+..+++.+++.+...+.+... .++..+++++...+. .+.... ..+++.+.+.+.
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~ 251 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ 251 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT
T ss_pred CHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC
Confidence 88532 223456677788888777765432 377777777765444 322222 446776666663
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCC-ccc-------ccc-------CCCCCCcccHHHHHHHHHHH-------h-----c
Q 000049 1786 NDNWRIRQSSVELLGDLLFKVAGTS-GKA-------LLE-------GGSDDEGASTEAHGRAIIEV-------L-----G 1838 (2629)
Q Consensus 1786 d~~~~vR~sa~~ll~~ll~~~~~~~-~k~-------~~~-------~~~ede~~~~~~~~~~l~~~-------L-----g 1838 (2629)
+|..|..+++++..++..-.+.. .+. ... ...++|.+......+.+... + .
T Consensus 252 --~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 329 (963)
T 2x19_B 252 --DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEH 329 (963)
T ss_dssp --STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred --CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccc
Confidence 57888999999888874211000 000 000 00011111111222222111 1 1
Q ss_pred hhhHHHHHHHHHhhcc-----CccHHHHHHHHHHHHHHHhcC-----------hhhHhhhHHHHHHHHHHHhcCCCH---
Q 000049 1839 RDKRNEVLAALYMVRS-----DVSLSVRQAALHVWKTIVANT-----------PKTLKEIMPVLMNTLISSLASSSS--- 1899 (2629)
Q Consensus 1839 ~e~~~~vl~~L~~~~~-----D~~~~VR~aA~~~l~~l~~~~-----------~~~l~~~l~~Ll~~L~~~L~~~~~--- 1899 (2629)
.+....++..+..+.. +.+..++..++..|..++... ...+.++++.+++.++..+..++.
T Consensus 330 ~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~ 409 (963)
T 2x19_B 330 WQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEY 409 (963)
T ss_dssp HHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 1222334444443333 234567888999999887621 133567888888888887753322
Q ss_pred ------------HHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc----CCCChhHHHHHHHHHHHHHHhhchhhHHHhH
Q 000049 1900 ------------ERRQVAGRALGELVRKLGERVLPSIIPILSRGL----KDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2629)
Q Consensus 1900 ------------~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L----~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2629)
+.|..+..+|..++...+...++.+++.+...+ .+.++..+.+++.+++.+.+.+.. ...+++
T Consensus 410 ~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-~~~~~l 488 (963)
T 2x19_B 410 GFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-NYSDVV 488 (963)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-SCCSHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-hhhHHH
Confidence 236677788888888878777788888777776 567899999999999998766543 224566
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh--hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccc
Q 000049 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM--QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041 (2629)
Q Consensus 1964 ~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~--~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Li 2041 (2629)
+.+++.+. .+.++++.||..++.+++.+.+.++. ..+..+++.+++.|.++
T Consensus 489 ~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~-------------------------- 541 (963)
T 2x19_B 489 PGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNP-------------------------- 541 (963)
T ss_dssp HHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCG--------------------------
T ss_pred HHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCc--------------------------
Confidence 66776443 44556889999999999988765442 23444444444444321
Q ss_pred hhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHh
Q 000049 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119 (2629)
Q Consensus 2042 p~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~--~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~ 2119 (2629)
.+...++.++..+++.++..+.||++.++..+...+.. -+...+..+.++++.++...+.
T Consensus 542 ------~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~------------ 603 (963)
T 2x19_B 542 ------ELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV------------ 603 (963)
T ss_dssp ------GGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH------------
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH------------
Confidence 12223445555666555666667777666666665542 1334444444454444433221
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc-----CCChhHHH---HHHHHHHHHHhhcCcccccc
Q 000049 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----DSDSTTVA---AAWEALSRVVASVPKEVQPS 2191 (2629)
Q Consensus 2120 ~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~-----d~d~~V~~---~a~~aL~~l~~~~~~~~l~~ 2191 (2629)
.+..+|+..+++.+...+. ..+++.+. ...++++.+++......-..
T Consensus 604 -------------------------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~ 658 (963)
T 2x19_B 604 -------------------------EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED 658 (963)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 3344444444444443321 12333333 45566666665543211000
Q ss_pred hHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHhhcChhhhhhch
Q 000049 2192 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2629)
Q Consensus 2192 l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~--~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2629)
.-.. .......+. .. + -........++|.+.+.+.. .+.++.+.++.+++.++...| +.+.||+
T Consensus 659 ~~~~--~~~~~~~~~------~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~-~~~~~~l 724 (963)
T 2x19_B 659 DHEG--PELRKLPVP------QG----P-NPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL-DDFAPMV 724 (963)
T ss_dssp ----------------------C----C-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-STTGGGH
T ss_pred cccc--cccccCCCC------CC----C-CchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc-ccccccH
Confidence 0000 000000000 00 0 00012344567776666543 467899999999999999888 6789999
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH--hcCCCccCchHHHHHHHHHHc-----CC--CCHHHHHHHHHHHHHH
Q 000049 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIR--KGGIALKPFLPQLQTTFIKCL-----QD--STRTVRSSAALALGKL 2340 (2629)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~--~~~~~l~p~lp~L~~~~~k~L-----~d--~~~~vR~~Aa~aLg~l 2340 (2629)
+.+..+++....... ....+.+++.++. +.+..+.++++++...++.+. .+ ..+++|......++.+
T Consensus 725 ~~~~~~l~~~~~~~~----~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~ 800 (963)
T 2x19_B 725 PQLCEMLGRMYSTIP----QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800 (963)
T ss_dssp HHHHHHHHHHHHHSC----CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHH
Confidence 988888777654321 1356677888877 555456677777666555542 34 3699999999999998
Q ss_pred Hhcc-------CC-hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCC--c---ChHHHHHHHHHHHHhhcCC-CHH
Q 000049 2341 SALS-------TR-VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS--V---SSAVKIRVYSVLKDLVYHD-DDH 2406 (2629)
Q Consensus 2341 ~~~~-------~~-~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~--~---~~~~~~~i~~~L~~~l~~~-~~~ 2406 (2629)
.... +. +..+++.++..++..+..+..++++.+..++...+.. . -..+...++..+...+.+. ...
T Consensus 801 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 880 (963)
T 2x19_B 801 LKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRS 880 (963)
T ss_dssp HHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGG
T ss_pred HHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 6532 33 6778888888888888999999999999999765411 1 1233445554444444432 222
Q ss_pred HHHHHHHHHHHHHhcCC
Q 000049 2407 VRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2407 vr~~aa~~Lg~L~~~~~ 2423 (2629)
.....+.+|..+....+
T Consensus 881 ~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 881 LMDCFADILFALNKHCF 897 (963)
T ss_dssp GHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHCh
Confidence 22345555555554433
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-17 Score=216.82 Aligned_cols=395 Identities=13% Similarity=0.148 Sum_probs=291.7
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000049 1132 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2629)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~--- 1207 (2629)
+..+|..+.++|+.+|+.|.+.+..+... .|+.+.. |...... . ..+..+|..++..|+.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~----L~~il~~------~--~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVE----LSRVLAN------P--GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC------T--TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHH----HHHHHHc------C--CCChHHHHHHHHHHHHhccccch
Confidence 35677888899999999999999876543 3444433 3332221 0 13458999999999987532
Q ss_pred ------------cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHhcccCCChhhhh
Q 000049 1208 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2629)
Q Consensus 1208 ------------~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~-~~~~~Ll~~~~~~l~~~~~~~~~~~ 1274 (2629)
++++....+...++ ..+.++++.+ ..+..++..+....+. ..|++++|.+...+.... .+.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~----~~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN----STE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT----CCH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC----CCH
Confidence 22222334555553 4566777777 7777777777766544 489999998888776521 034
Q ss_pred hHHHHHHHHHHHHHhhhcc--CCCcchhhHHHHHhhcCCC--cHHHHHHHHHhhhhhHhhhccch-----HH-HHHHHHH
Q 000049 1275 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLD 1344 (2629)
Q Consensus 1275 ~vr~~~v~~~~~La~~l~~--~~~~l~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~l~~~~~~~~-----~~-ll~~ll~ 1344 (2629)
.+|++++..++.+++.+.. ..+++..+++.+...+.++ ++.||..+.+++..++..+.+.. .. +++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~- 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC- 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-
Confidence 6899999999999876522 2566778899999999998 79999999999988765443211 12 233333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------------
Q 000049 1345 QLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 1410 (2629)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~------------ 1410 (2629)
.+..+.+..+|..++.+|..++...+..... -. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445567899999999999999866532111 12 5777777777776 7889999999999988763
Q ss_pred ---------ccCchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh
Q 000049 1411 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
...+.+++..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456788999999988853 3457999999999999998886666888999999999999999
Q ss_pred hHHHHHHHHHHHhhCc-hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-----hhHHhHHHHHHhcc
Q 000049 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~lvp~Ll~~l 1546 (2629)
|.+++.+++.++.++. +.+..+++.++|.+...++|+++.||.+|+++|+++++.+++ +++..++|.++..+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999998654 667788999999999999999999999999999999987764 46677777777655
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-15 Score=215.92 Aligned_cols=752 Identities=11% Similarity=0.084 Sum_probs=420.4
Q ss_pred HHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HH
Q 000049 1049 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DI 1120 (2629)
Q Consensus 1049 ~~~~~~~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~ 1120 (2629)
++..-..-.++.++|+++++|++..|++|++.|++.... |.....+..+. ..+.+..+|.+|. ..
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 8 DFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhh
Confidence 344444556888999999999999999999999876421 22233333332 2245666676654 34
Q ss_pred HhhcCCCCCCCh-HhHHHhhcCC---------CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCC
Q 000049 1121 WDRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2629)
Q Consensus 1121 w~~~~~~~~~~~-~~Ll~~l~~~---------~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1189 (2629)
|...+.+.++.+ ..++..+.+. +..+|++.+++++.++. .||+.|++.+..+.+... .
T Consensus 81 W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~------- 149 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------- 149 (1049)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T-------
T ss_pred CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c-------
Confidence 765443333345 6677766542 47899999999999875 589889988888887641 0
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCC
Q 000049 1190 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269 (2629)
Q Consensus 1190 ~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~ 1269 (2629)
+...+.....+|..+++.+..-.. .+....-|....+. +. .....+++.+...+... .
T Consensus 150 ~~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk~~----l~----~~~~~i~~~~~~~l~~~-~- 207 (1049)
T 3m1i_C 150 SVNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLKNS----MS----KEFEQIFKLCFQVLEQG-S- 207 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHC-C-
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHHHH----HH----HHHHHHHHHHHHHHHhc-C-
Confidence 113567777778777754332100 00111111111111 11 12445666666666542 1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhh-ccc-------hHHHHHH
Q 000049 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSR 1341 (2629)
Q Consensus 1270 ~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~-~~~-------~~~ll~~ 1341 (2629)
...++..++..++....+.+.....-..+++.+.+.+. .+++++..+.+|+..++..- ++. ...+++.
T Consensus 208 ---~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~ 283 (1049)
T 3m1i_C 208 ---SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN 283 (1049)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence 23466666666655544443110001234444442221 26789999999998887552 111 1122233
Q ss_pred HHHHhhc-----------------CCCHHHHHHHHHHHHHHHhhhC-----cchhhh--hcHHHHHHHHhcCCCCHHHHH
Q 000049 1342 LLDQLMK-----------------SDKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRRE 1397 (2629)
Q Consensus 1342 ll~~L~~-----------------~~~~~~R~~Aa~~L~~l~~~lg-----~~~l~~--~~i~~~L~~~l~~~~~~~~R~ 1397 (2629)
+++.+.. ..+.......+..+..+..... ...... ..+++.+..+.... +...+.
T Consensus 284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~ 362 (1049)
T 3m1i_C 284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFK 362 (1049)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHH
T ss_pred HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHH
Confidence 3332211 1122333344444443332211 000110 13456666665555 677788
Q ss_pred HHHHHHHHHHHHh------ccCchhHHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHH
Q 000049 1398 GALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMS 1449 (2629)
Q Consensus 1398 ~Al~al~~La~~~------~~~~~~~v~~ilp~ll~~l~D~-------------------~---~~VR~aa~~al~~i~~ 1449 (2629)
.++..+..+++.+ ...+.+++.++++.++..+.-+ + ...|.++.+++..+..
T Consensus 363 ~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~ 442 (1049)
T 3m1i_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH 442 (1049)
T ss_dssp HHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc
Confidence 8888888887732 2456788899999998876311 1 1446677788888875
Q ss_pred hhcHHhHHhhHHHHHhhhc--cCChhhhHHHHHHHHHHHhhCchhhh-hhccchHHHHhhhhc-----CCCHHHHHHHHH
Q 000049 1450 QLSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQT 1521 (2629)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~-----D~~~~VR~aA~~ 1521 (2629)
..+...+..+++.+-+.+. +.+|+.+.+++.++|+++.+...... .+++.+++.+..+.. |+++.||..+++
T Consensus 443 ~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~ 522 (1049)
T 3m1i_C 443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMY 522 (1049)
T ss_dssp HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 5554455666666666664 36899999999999999877655433 347888888777543 567888888999
Q ss_pred HHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000049 1522 ALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2629)
Q Consensus 1522 aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~ 1601 (2629)
+++++++.+.+. ...+..+++.+..++.+.++.++..|+.++.
T Consensus 523 ~lgry~~~~~~~-------------------------------------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 523 VVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-------------------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999998654321 1123344555556666667788888888888
Q ss_pred HHhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhccCCChHH
Q 000049 1602 NMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVE 1674 (2629)
Q Consensus 1602 ~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~-~~~~~ll~~Ll~~L~~~~~~~~ 1674 (2629)
+++...+. +.++.||++.++..+..++.+...+-+....++++.++...++ +....++..++..+.
T Consensus 566 ~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~------- 638 (1049)
T 3m1i_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN------- 638 (1049)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH-------
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------
Confidence 88875432 1233599999999999999887777778889999999987763 222223322222111
Q ss_pred HHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCC-Chh-hHH--HHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC
Q 000049 1675 RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VRD--GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1675 R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~-vR~--~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2629)
+.+..+.. ...+...+. ++. ++. ..+.++..++..+|..|.|+++.+++.++..+..
T Consensus 639 -----~~~~~~~~------------~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~-- 699 (1049)
T 3m1i_C 639 -----MAWDTIVE------------QSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA-- 699 (1049)
T ss_dssp -----HHHHHHHH------------HHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH--
T ss_pred -----HHHHHHHH------------HHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--
Confidence 00111110 000000000 111 122 3356778888899999999988777765432211
Q ss_pred hhHHHHHHHHHHHHHHHhhhc--------hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCC
Q 000049 1751 ESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~--------~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede 1822 (2629)
. ...+...+...+.. ....+.|.+. .++.......
T Consensus 700 -----~-~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~---------------~ll~~~~~~~---------------- 742 (1049)
T 3m1i_C 700 -----V-SSMISAQVAAEGLIATKTPKVRGLRTIKKEIL---------------KLVETYISKA---------------- 742 (1049)
T ss_dssp -----H-HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHH---------------HHHHHHHHHC----------------
T ss_pred -----H-HHHHHHHHHccCchhhhhHHHHHHHHHHHHHH---------------HHHHHHHHhC----------------
Confidence 0 00000000000100 0011111111 1122211110
Q ss_pred cccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHH-HHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHh----c--
Q 000049 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSL----A-- 1895 (2629)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR-~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L----~-- 1895 (2629)
...+.. .. .+.+.++..+...........| ..++.+++.++...+..+.++++.+++.+..+. .
T Consensus 743 -~~l~~~----~~----~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~ 813 (1049)
T 3m1i_C 743 -RNLDDV----VK----VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD 813 (1049)
T ss_dssp -SCHHHH----HH----HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -CCHHHH----HH----HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 000000 00 0111122111111000000100 345667777777666667777777777766663 2
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000049 1896 -SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2629)
Q Consensus 1896 -~~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2629)
+..+++|......++.++......+ ...++.....++..+++.+...++..+.+++...
T Consensus 814 ~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 814 FTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 4679999999999999998765543 2334444455677778888888877777766543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-14 Score=189.38 Aligned_cols=675 Identities=13% Similarity=0.086 Sum_probs=420.0
Q ss_pred CChhhHHHHHHHHHHhhhh-hccchHhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhchh---hh-HHHHHh
Q 000049 1708 QRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSL---PL-LLPAVE 1781 (2629)
Q Consensus 1708 ~~~~vR~~a~~~l~~L~~~-~g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~iv~~~~~~~i---~~-llp~l~ 1781 (2629)
.+.+-|+.|+.-+..+++. .|.+. =|-..-+..+.+.+.. .++++.-+|++.+..+++....... .. =.|.+.
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~ 98 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAEL-LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFM 98 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred cCHHHHHHHHhhceeeeccccchHH-HHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHH
Confidence 3455666666666666643 22211 1122334555666665 6788999999999998876533321 11 245666
Q ss_pred hccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhcc--CccHH
Q 000049 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLS 1859 (2629)
Q Consensus 1782 ~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~--D~~~~ 1859 (2629)
+.+..++...-.++..++..++..++|...+.. .-.+ +.++..-. ...+.++..|..... -.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 99 RVLDQKHENCVSTAQFCLQTILNALSGLKNKPD----SKPD--------KELCTRNN-REIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT----CCCC--------HHHHHHTH-HHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhccccccc----cCCc--------HHHHhhhh-hHHHHHHHHHHHHhhccccChh
Confidence 777777888888888889888887765422110 0011 11221111 122334444443333 35678
Q ss_pred HHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhc------CC--------CHHHHHHHHHHHHHHHHHhc-----cc
Q 000049 1860 VRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLA------SS--------SSERRQVAGRALGELVRKLG-----ER 1919 (2629)
Q Consensus 1860 VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~------~~--------~~~~R~~A~~~L~~lv~~~~-----~~ 1919 (2629)
.|.++++.+-..+.... +....++. ...+.+.|. +. .++.|..+.-++..+...++ +.
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 99999998877664331 11111111 112222221 11 45799999999999998887 33
Q ss_pred hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 000049 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2629)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~-l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~ 1998 (2629)
+...+-..+...+...+.+.+..+++++..++.......-.-+ ....++.+...+..+++.++..|.++++..+..-..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~ 323 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK 323 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHH
Confidence 4455555566666677888888889999887654322111112 247889999999999999999999999986532111
Q ss_pred --hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC-----CChh-h
Q 000049 1999 --QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG-----PGLN-F 2070 (2629)
Q Consensus 1999 --~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g-----~~l~-~ 2070 (2629)
...+.-+|.|...+.+++.. ++.+++.+|..++...+ ..+. .
T Consensus 324 R~~I~~~gv~~L~~Ll~s~~~~------------------------------vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 324 AKALCEQGVDILKRLYHSKNDG------------------------------IRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHTTHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHHHHcCcHHHHHHHcCCCHH------------------------------HHHHHHHHHHHhccccccCccccchhhc
Confidence 01122246666666543311 01112223333322111 1111 1
Q ss_pred hHhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhccc-cc-H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhch
Q 000049 2071 HLGTILPALLSAMGDD--DMDVQSLAKEAAETVTLVIDE-EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2629)
Q Consensus 2071 ~l~~il~~Ll~~L~~~--~~~vr~~a~~al~~l~~~~~~-~~-~--~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~ 2144 (2629)
-+..+++.+.+.|.++ +++++..+.+++..+....+. .. . ..+++.|+..++++++.++..++.+|+++.....
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 2466788888888766 788999999999888653321 11 1 3578888888888899999999999999987431
Q ss_pred h-----------hh-------------hhhH---------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccc
Q 000049 2145 L-----------YL-------------VDEA---------PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191 (2629)
Q Consensus 2145 ~-----------~~-------------~~~~---------~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~ 2191 (2629)
. .+ .++. ...++.|+.++..+++.+++.|..+|..+.... +
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~--~---- 527 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK--E---- 527 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH--H----
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--H----
Confidence 0 00 0111 146788999999999999999999999996421 1
Q ss_pred hHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhh--ch
Q 000049 2192 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE--FV 2269 (2629)
Q Consensus 2192 l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p--~v 2269 (2629)
.++.+.. ...+|.++..+.++++..|+.|+.+|+.++....+...-+ .+
T Consensus 528 ----~r~~Vv~-------------------------~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 528 ----LRGKVVQ-------------------------EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp ----HHHHHHH-------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred ----HHHHHHH-------------------------CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 1111110 1246778888889999999999999999997765433211 12
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCc-h-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCC-
Q 000049 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF-L-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR- 2346 (2629)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~-l-p~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~- 2346 (2629)
...++||++.+....+...+..++.+|..|...-+. .+.. + ...++.+...+.++++.+|..|+.+++.++.....
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 457899999987432334456788888887653111 1100 0 12355667777788999999999999999653211
Q ss_pred ---h--hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000049 2347 ---V--DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK--IRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2629)
Q Consensus 2347 ---~--~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~--~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2629)
+ ...++.|+..+...+..+|..+++||..+........ .... ...++.|..++.+.++.++..++.+++.++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 1 2467788888888889999999999999986422211 2222 346678888999999999999999999988
Q ss_pred hcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcC---CChhHHHhHHHHh
Q 000049 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD---EKFPLREASTKAL 2496 (2629)
Q Consensus 2420 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~---~~~~ir~~a~~al 2496 (2629)
.. +++. ...+.. . .+++.|+..++. .+..+++.|..|+
T Consensus 737 ~~-s~e~----~~~l~e------------------------------~----G~i~~L~~LL~~~d~~~~~i~e~Al~aL 777 (810)
T 3now_A 737 NA-GEEI----AKKLFE------------------------------T----DIMELLSGLGQLPDDTRAKAREVATQCL 777 (810)
T ss_dssp TT-CHHH----HHHHHT------------------------------S----THHHHHTTSCCCTTSTTHHHHHHHHHHH
T ss_pred hC-CHHH----HHHHHH------------------------------C----CCHHHHHHHHhCcccCcHHHHHHHHHHH
Confidence 63 2211 111110 0 123344444432 3678889999999
Q ss_pred HHHHhhhh
Q 000049 2497 GRLLLHQI 2504 (2629)
Q Consensus 2497 g~ll~~~~ 2504 (2629)
..++.+..
T Consensus 778 ~~ll~~g~ 785 (810)
T 3now_A 778 AAAERYRI 785 (810)
T ss_dssp HHHHHHHT
T ss_pred HHHHhCCC
Confidence 99888764
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-14 Score=203.54 Aligned_cols=694 Identities=10% Similarity=0.049 Sum_probs=395.6
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHH
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWL 1662 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~----~g~~~~~~ll~~L 1662 (2629)
.+...|+.|.+.+..+-.. +...+.+..++. +.++.+|..|+..|...+.. +.++....+-..+
T Consensus 19 ~d~~~r~~A~~~L~~~~~~-----------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS-----------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp STTTC----CHHHHHTTTS-----------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 4456777787777765331 123333444443 46789999999999887763 3333334444455
Q ss_pred HHHhccC--CChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCC------ChhhHHHHHHHHHHhhhhhc-cc---
Q 000049 1663 LDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ------RASVRDGYLTLFKYLPRSLG-VQ--- 1730 (2629)
Q Consensus 1663 l~~L~~~--~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~------~~~vR~~a~~~l~~L~~~~g-~~--- 1730 (2629)
++.+... .+..+|...+.+++.++....+ .|+++++.+.+.++++ ++..++.++.+|..++.... ..
T Consensus 88 l~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 88 LESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 5544432 2456888999999999888766 7888999998887664 56678888888887775221 10
Q ss_pred --------hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhh-ccCCCchHHHHHHHHHHHH
Q 000049 1731 --------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGD 1801 (2629)
Q Consensus 1731 --------f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~-~l~d~~~~vR~sa~~ll~~ 1801 (2629)
+..+++.+++.+...+. .... ...+..|.++..++++++.
T Consensus 167 ~r~~~~~~l~~~~~~vl~ll~~~l~-------------------------------~~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 167 KRVVLRAEIAKRVQLVIHTVERYLK-------------------------------LQMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHH-------------------------------HHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------cccCCCCCccchhHHHHHHHHHHH
Confidence 00111111111111110 0000 0011135777777777777
Q ss_pred HHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHh---------------hccCccHHHHHHHHH
Q 000049 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM---------------VRSDVSLSVRQAALH 1866 (2629)
Q Consensus 1802 ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~---------------~~~D~~~~VR~aA~~ 1866 (2629)
++.. .... .+ . ...+++.++. +..+.+..+|..|++
T Consensus 216 ~~~~-~~ip-----------~~-~----------------~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 266 (971)
T 2x1g_F 216 WIKN-IGYT-----------IE-G----------------CVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLK 266 (971)
T ss_dssp HHHH-SCCC-----------GG-G----------------HHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHH
T ss_pred HHhh-CCcC-----------cc-c----------------cccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHH
Confidence 6542 0000 00 0 0112222221 012245679999999
Q ss_pred HHHHHHhcCh-----hhHhhhHHHHHHHHHH---HhcCCCH---HHHHHHHHHHHHHHHHhcc--------------chh
Q 000049 1867 VWKTIVANTP-----KTLKEIMPVLMNTLIS---SLASSSS---ERRQVAGRALGELVRKLGE--------------RVL 1921 (2629)
Q Consensus 1867 ~l~~l~~~~~-----~~l~~~l~~Ll~~L~~---~L~~~~~---~~R~~A~~~L~~lv~~~~~--------------~~l 1921 (2629)
++..++...+ ..+..+++.++...-. .+.+.+. +.....++.+..+...... ..+
T Consensus 267 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (971)
T 2x1g_F 267 TMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV 346 (971)
T ss_dssp HHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH
Confidence 9999987532 1233333433332211 2233332 4444455555555432111 123
Q ss_pred hhHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHhh-----------chhhHHHhHHHHHHHHHHHhcCC--------
Q 000049 1922 PSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASA-----------GKSQLLSFMDELIPTIRTALCDS-------- 1977 (2629)
Q Consensus 1922 ~~llp~L~~~L~-----d~~~~vR~~a~~aL~~li~~~-----------~~~~l~~~l~~ll~~l~~~L~d~-------- 1977 (2629)
..+++.+..... ..+.++...++.....+.... ....+.+++..+++.+...+.-+
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 344555554432 246778888887766654421 11344677788888887766311
Q ss_pred cH-------HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCC-
Q 000049 1978 IL-------EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL- 2049 (2629)
Q Consensus 1978 d~-------~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~- 2049 (2629)
++ ..|..+..++..++...|....+.+++.+-+.+.... .. .+..
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------~~-----------~~~w~ 479 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ----------------RH-----------PTHWT 479 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH----------------HC-----------TTCCH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CC-----------CCcHH
Confidence 11 3455666666666665554444444444333332100 00 0011
Q ss_pred -chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHhhcCCC
Q 000049 2050 -SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDN 2124 (2629)
Q Consensus 2050 -~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~--~~~~~vr~~a~~al~~l~~~~~--~~~~~~ll~~Ll~~l~d~ 2124 (2629)
......+++++++.......++++.+++ ++..+. +.++.+|..++++++.+...+. .+++..+++.++..+ +
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~- 556 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N- 556 (971)
T ss_dssp HHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C-
Confidence 1123445666655444444567888888 444444 4589999999999999987664 367899999999988 4
Q ss_pred ChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCcccc----cchHHHHHH
Q 000049 2125 QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEVQ----PSYIKVIRD 2198 (2629)
Q Consensus 2125 ~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~l----~~l~~~l~~ 2198 (2629)
+.++..|+.++..|++..+..+.+|++.++..+...++. .+...+..+.++++.++...+.+.. ..++.++.+
T Consensus 557 -~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 -SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp -SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999999899999999999999999986 4678899999999999887653221 122222222
Q ss_pred HHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC--CHHHHH---HHHHHHHHHHhhcC------------
Q 000049 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELRE---QAALGLGELIEVTS------------ 2261 (2629)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~--~~~~r~---~aa~~L~~l~~~~~------------ 2261 (2629)
.+.. .+.+. +++.+. .+..+|+.++...+
T Consensus 636 ~l~~----------------------------------~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~ 681 (971)
T 2x1g_F 636 ELQA----------------------------------ICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPI 681 (971)
T ss_dssp HHHH----------------------------------HHTC---CHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHH----------------------------------HHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccC
Confidence 2211 11111 122222 23344444444332
Q ss_pred hhhhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000049 2262 EQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340 (2629)
Q Consensus 2262 ~~~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l 2340 (2629)
++.+.++...+.+.+..++... .+.++...++.+++.++...|..+.||+|++.+.++..+..... ..+...++.+
T Consensus 682 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~ 758 (971)
T 2x1g_F 682 VQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTA 758 (971)
T ss_dssp --CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 2356778888888877777543 25689999999999999999999999999999999998877422 2356666666
Q ss_pred Hhc-cC------ChhHHHHHHHH----hhhc-------CCHHHHHHHHHHHHHHHhhcCCCcC-hHH-HHHHHHHHHHhh
Q 000049 2341 SAL-ST------RVDPLVGDLLS----SLQV-------SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLV 2400 (2629)
Q Consensus 2341 ~~~-~~------~~~~ll~~Ll~----~l~~-------~d~~vr~~~l~AL~~vi~~~g~~~~-~~~-~~~i~~~L~~~l 2400 (2629)
+.. +. .+..++..+.. .+.. .+++++.....-+..++......+. .+. .+.++......+
T Consensus 759 i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 759 IVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGM 838 (971)
T ss_dssp HTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc
Confidence 442 21 13344443332 2222 2588999999999998887665442 355 677888877777
Q ss_pred cCCCHHHHHHHHHHHHHHHhc
Q 000049 2401 YHDDDHVRVSAASILGIMSQC 2421 (2629)
Q Consensus 2401 ~~~~~~vr~~aa~~Lg~L~~~ 2421 (2629)
...+.....++..++..+...
T Consensus 839 ~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 839 TLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp TSSCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 766655666677777665544
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-13 Score=181.31 Aligned_cols=671 Identities=14% Similarity=0.110 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH-HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchh
Q 000049 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ 1492 (2629)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v-~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~ 1492 (2629)
-+.+++..++. ...+..=|+.|..-+-.++..-.+. -+ ..-+..+.+.+++ ++.....+++.+|..+++..+..
T Consensus 7 kv~~m~~i~~~--~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r 84 (810)
T 3now_A 7 KVKQMMDLTFD--LATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84 (810)
T ss_dssp HHHHHHHHHHS--SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcc--cccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHH
Confidence 35566666655 2333456667766666655431111 11 2224455555666 67888999999999999887665
Q ss_pred hhhhccch-HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc------------------hhHHhHHHHHHhccCCCCh--
Q 000049 1493 LSQCLPKI-VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------------------PEIASLVPTLLMGLTDPND-- 1551 (2629)
Q Consensus 1493 l~~~L~~i-vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~------------------~~i~~lvp~Ll~~l~d~~~-- 1551 (2629)
...-+..+ +|.+...+...++++-.+++.+++.+...+.. .+++.++..|+..+.+..-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (810)
T 3now_A 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG 164 (810)
T ss_dssp HHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh
Confidence 43333332 57788888888999999999999887765431 1345556666666665532
Q ss_pred hHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC
Q 000049 1552 HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630 (2629)
Q Consensus 1552 ~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d 1630 (2629)
..| .+++.+.+ .+++.+...... |..+.....++ .++..+.+ .+| +.-+ .
T Consensus 165 ~~r~~~~~~~~~--~~~~~~~~~~~~-------------~~~~~g~~~~l-~v~~~~~~----~~~-~~~~--------~ 215 (810)
T 3now_A 165 AARDGVIELITR--NVHYTALEWAER-------------LVEIRGLCRLL-DVCSELED----YKY-ESAM--------D 215 (810)
T ss_dssp HHHHHHHHHHHH--HTTCTTTTHHHH-------------HHHTTHHHHHH-HHHTCCSS----SCC-SSCC--------C
T ss_pred hhHHHHHHHHHH--hCCccccccccc-------------hhhHhhHHHHH-HHHhcCcc----ccc-cccC--------C
Confidence 234 34444432 111111000000 11111111111 12211111 011 0000 1
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh---hHH--HhHhHHH
Q 000049 1631 PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYF--EHILPDI 1701 (2629)
Q Consensus 1631 ~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~---~~l--~~llp~l 1701 (2629)
-.+++|..+.-++..+.+.++-+ .+.+.+..++..............++++++.++.+... ..+ +..+|.+
T Consensus 216 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~l 295 (810)
T 3now_A 216 ITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMI 295 (810)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHH
Confidence 25689999999999999988732 34444444444333344455566788888888764322 222 5788999
Q ss_pred HHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh---------hc
Q 000049 1702 IRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYA---------TT 1771 (2629)
Q Consensus 1702 ~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~---------~~ 1771 (2629)
+..+.+++..+++.+..+++.++.. .....++ ..-+|++...+..+++.+|.-|+.++..+..... ..
T Consensus 296 i~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 296 LAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc
Confidence 9999999999999999999987654 3233332 2234888888888888899988888877753221 12
Q ss_pred hhhhHHHHHhhccCCC--chHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHH
Q 000049 1772 SLPLLLPAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~--~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L 1849 (2629)
.+..++|.+.+.+.++ +..+|..+++.+..+... . .....+... ...++.|
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-----------------~----~vk~~lv~d------~g~Ip~L 426 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-----------------A----ECKEKLIED------KASIHAL 426 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-----------------H----HHHHHHHHC------HHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-----------------c----HHHHHHHHc------cchHHHH
Confidence 3556788888887776 677899999988887311 0 011112111 1245555
Q ss_pred HhhccCccHHHHHHHHHHHHHHHhcChh----------------------------hH----hhhHH-HHHHHHHHHhcC
Q 000049 1850 YMVRSDVSLSVRQAALHVWKTIVANTPK----------------------------TL----KEIMP-VLMNTLISSLAS 1896 (2629)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~~~----------------------------~l----~~~l~-~Ll~~L~~~L~~ 1896 (2629)
+..+...+..+...|..+++.++..... .. +.++. ..+|.++..+.+
T Consensus 427 V~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 5555555677889999999999874410 00 11111 357889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHH--HhHHHHHHHHH
Q 000049 1897 SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL--SFMDELIPTIR 1971 (2629)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~--~~l~~ll~~l~ 1971 (2629)
+++.+|..|+++|+.++...... +....+|.|...+.+.++..|..++.+|+.+.....+.... ......+|.+.
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv 586 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL 586 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH
Confidence 99999999999999997421111 22346777777777888899999999999987655443321 11235788888
Q ss_pred HHhcCC-cHHHHHHHHHHHHHHHHHhCh---hhh-hhhHHHHHHhccCcCc--hhHHHHHHHHHHhhhccCcCcccchhh
Q 000049 1972 TALCDS-ILEVRESAGLAFSTLFKSAGM---QAI-DEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILPKL 2044 (2629)
Q Consensus 1972 ~~L~d~-d~~VR~~A~~al~~l~~~~g~---~~~-~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2629)
..+... +...+..|+.++..+...... ..+ ...+|.|.+.|.++.. +..|+..+..++
T Consensus 587 ~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa--------------- 651 (810)
T 3now_A 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV--------------- 651 (810)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT---------------
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh---------------
Confidence 888643 455566788888877642110 111 1335555555544321 223333333332
Q ss_pred hcCCCchhHHHHHHHHHHHhCCC-hhhhH--hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc--cc-H--HHHHHH
Q 000049 2045 VHLPLSAFNAHALGALAEVAGPG-LNFHL--GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EG-V--ESLVSE 2116 (2629)
Q Consensus 2045 ~~~~~~~~~~~aL~~La~~~g~~-l~~~l--~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~-~--~~ll~~ 2116 (2629)
. +.. ...+. ...++.|+..+..++..+|..+.+++..+...... .. + ...++.
T Consensus 652 -----------------~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~ 712 (810)
T 3now_A 652 -----------------M--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI 712 (810)
T ss_dssp -----------------T--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred -----------------C--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 1 111 11122 25788999999889999999999999998763211 11 2 246778
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHh
Q 000049 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDS---DSTTVAAAWEALSRVVA 2182 (2629)
Q Consensus 2117 Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d~---d~~V~~~a~~aL~~l~~ 2182 (2629)
|...+.+++..+|..|+++++++....+ +...++ ...++.|..++.+. +..+++.|.++|..+.+
T Consensus 713 Lv~LL~s~d~~vq~~A~~aL~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIVIILNMINAGE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999987543 222222 25678888887654 68899999999999875
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-14 Score=195.16 Aligned_cols=469 Identities=13% Similarity=0.130 Sum_probs=297.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2629)
.+.+.+.++ +...|..+..++..+++..+ .....+++.+.+.+.|+++.+|..|..++..+ ..+.....++|
T Consensus 53 ~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l~~ 124 (591)
T 2vgl_B 53 DVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLCE 124 (591)
T ss_dssp HHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHHHH
Confidence 344456554 67777777776766665432 22334456666677778888887665554443 24444566777
Q ss_pred HHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch----hHHh
Q 000049 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIAS 1537 (2629)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~ 1537 (2629)
.+.+.+.+.++.+|+.|+.+++.+....|+.+.. ..++|.+..+++|+++.|+.+|+.+|+.++..-++. ....
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence 7777777777888888888888877766664432 357788888899999999999999999988654322 1234
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc-CCCCcccc
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDMIP 1615 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~-~~~~~l~~ 1615 (2629)
.++.+++.+.+.++..+ ..++.+.. +. ..+......+++.+...+++.++.++..|+.++..+...+ .+++.+..
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~ 279 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM 279 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 45566666655555444 34444432 22 1233445678888888889999999999999999886533 12233444
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHH
Q 000049 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2629)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~ 1695 (2629)
..+.+.+.+..++ ++++++|..|..+++.++...++ .+...+..++ .+.+++ ..+|..++..+..++. .+..+
T Consensus 280 ~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~~---~~nv~ 352 (591)
T 2vgl_B 280 LLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLAS---QANIA 352 (591)
T ss_dssp HHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTCC---SSTHH
T ss_pred HHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHCC---hhhHH
Confidence 4566777777655 47899999999999999886443 2222222111 222333 5678777766665543 23456
Q ss_pred hHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh
Q 000049 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2629)
Q Consensus 1696 ~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~ 1775 (2629)
.+++.+...+.+.++.+|..++..++.++..++ +....+++.++..+.+..+.++..+..++..++..++... ..
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~-~~ 427 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY-ES 427 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC-CT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH-HH
Confidence 778888888888899999999999988887654 3445667777778888888888777766666655443210 01
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccC
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D 1855 (2629)
.++.+.+.+. .+
T Consensus 428 ~v~~L~~~l~--------------------------------------------------------------------~~ 439 (591)
T 2vgl_B 428 IIATLCENLD--------------------------------------------------------------------SL 439 (591)
T ss_dssp THHHHHHTTT--------------------------------------------------------------------TC
T ss_pred HHHHHHHHHH--------------------------------------------------------------------hc
Confidence 1111111110 12
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCC-
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD- 1934 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d- 1934 (2629)
....+|..++.++|.+....+. .+.+++.+.+.+.+.+..+|..+..++..+....++...+.+...+.....|
T Consensus 440 ~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~ 514 (591)
T 2vgl_B 440 DEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDS 514 (591)
T ss_dssp CSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcC
Confidence 3455667777777766554432 2344555555666677888888888888887665543334444444444444
Q ss_pred CChhHHHHHHHHHH
Q 000049 1935 PSASRRQGVCIGLS 1948 (2629)
Q Consensus 1935 ~~~~vR~~a~~aL~ 1948 (2629)
.++++|..++..+.
T Consensus 515 ~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 515 DNPDLRDRGYIYWR 528 (591)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHH
Confidence 67899988876554
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.70 E-value=8.5e-13 Score=187.82 Aligned_cols=782 Identities=11% Similarity=0.084 Sum_probs=425.1
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------
Q 000049 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2629)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~-------- 1118 (2629)
+.++.+.++-+.+.++++.+.+|++..|.+|++.|++.... |....+...+.. .+.+..+|-+|.
T Consensus 6 ~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~ 78 (1023)
T 4hat_C 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQILQ--FSTNPQSKFIALSILDKLIT 78 (1023)
T ss_dssp GGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHH
Confidence 34455566778899999999999999999999999876421 222233333332 234456665553
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcC----C-----CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000049 1119 DIWDRYGYDFGTDY-SGLFKALSH----S-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2629)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~----~-----~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2629)
..|...+.+-++.+ ..+++.+.+ + ...+|++.+.+++.++. .||+.|++.+..+.+...
T Consensus 79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~---------- 148 (1023)
T 4hat_C 79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS---------- 148 (1023)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----------
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----------
Confidence 45875543333334 556654432 2 46789999999999865 789999998888887631
Q ss_pred CCCcchhhHHHHHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccC
Q 000049 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2629)
Q Consensus 1188 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~ 1267 (2629)
.+...+......+..+++.+..- . -.+-...-|....++... .++.+++++...+....
T Consensus 149 -~~~~~~~~~L~iL~~L~EEV~~~----------~--~~~l~~~r~~~lk~~l~~--------~~~~I~~ll~~iL~~~~ 207 (1023)
T 4hat_C 149 -SSVNVCENNMIVLKLLSEEVFDF----------S--AEQMTQAKALHLKNSMSK--------EFEQIFKLCFQVLEQGA 207 (1023)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHTS----------C--TTTSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCS
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHh----------h--hccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCC
Confidence 11134555566666665543210 0 001111212222222211 14456666666665421
Q ss_pred CChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHH-hhcCCCcHHHHHHHHHhhhhhHhh-h-cc--chH----HH
Q 000049 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQS-M-QD--EAP----TL 1338 (2629)
Q Consensus 1268 ~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~-~~L~~~~~~Vq~~~~~~L~~l~~~-~-~~--~~~----~l 1338 (2629)
...+...+...++....+++...-.-..+++.+. ..+. +++.+.++++|+..++.. . ++ ... .+
T Consensus 208 -----~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 208 -----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp -----SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 1234445555555555544321100134666666 6664 567999999999998863 2 22 122 22
Q ss_pred HHHHHHHh---------------hcCCCHHHHHHHHHHHHHHHhhhCcchhh------h-hcHHH----HHHHHhcCCCC
Q 000049 1339 VSRLLDQL---------------MKSDKYGERRGAAFGLAGVVKGFGISSLK------K-YGIAA----TLREGLADRNS 1392 (2629)
Q Consensus 1339 l~~ll~~L---------------~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~------~-~~i~~----~L~~~l~~~~~ 1392 (2629)
++..++.+ ...++.+ ..-..+++.+...+|..... . .+++. .|..+...+ +
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D--~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d 357 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGND--QSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-E 357 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTH--HHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-C
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-c
Confidence 23333322 1111100 11233344444333321110 0 12322 344443333 4
Q ss_pred HHHHHHHHHHHHHHHHHhc------cCchhHHHHHHHHHHHHcCCCC---------------------HHHH-HHHHHHH
Q 000049 1393 AKRREGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV---------------------VAVR-EAAECAA 1444 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~------~~~~~~v~~ilp~ll~~l~D~~---------------------~~VR-~aa~~al 1444 (2629)
...=..++.....+++.+- ..+.|++.++++.++..+.-|. .... +..-+++
T Consensus 358 ~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L 437 (1023)
T 4hat_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHH
Confidence 5443444444445655332 3478889999999998765332 0000 0112555
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCch-hhhhhccchHHHHhhhhc-----CCCHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQ 1516 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~-----D~~~~VR 1516 (2629)
..+.....++.+..+++.+.+.+.+ .+|+.+.+++.++|+++.+... ....+++.++|.|+.++. |+++.||
T Consensus 438 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~ 517 (1023)
T 4hat_C 438 VYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVA 517 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHH
Confidence 5554444555567777777766654 6899999999999999987544 467889999999999886 5677889
Q ss_pred HHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHH
Q 000049 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596 (2629)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a 1596 (2629)
..+++++|++++.+... ...+..++..+..++.+.++++...|
T Consensus 518 ~t~~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A 560 (1023)
T 4hat_C 518 SDIMYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMA 560 (1023)
T ss_dssp HHHHHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999998765411 11233344555566666667788888
Q ss_pred HHHHHHHhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhccC
Q 000049 1597 AQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSD 1669 (2629)
Q Consensus 1597 ~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-~~~ll~~Ll~~L~~~ 1669 (2629)
|.++.++|..... +.+..||++.++..+.....+-.+.-+..+..++|.++...+.+. ...++..|+..+..
T Consensus 561 ~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~- 639 (1023)
T 4hat_C 561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM- 639 (1023)
T ss_dssp HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH-
Confidence 8888888875432 234468999999999998887788888999999999999887542 33333333322110
Q ss_pred CChHHHHHHHHHHHHHHHh--hChhHHHhHhHHHHHhhcCCChhhH--HHHHHHHHHhhhhhccchHhhHHhHHHHHHhh
Q 000049 1670 NSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCSHQRASVR--DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1670 ~~~~~R~~a~~~L~~i~~~--~g~~~l~~llp~l~~~l~~~~~~vR--~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2629)
.+..+... -++..+ .++ ..++ -..+.++..++..+|..|.|++..+++.+++.
T Consensus 640 -----------~~~~l~~~~~~~~~~~-----------~d~-~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~ 696 (1023)
T 4hat_C 640 -----------AWDTIVEQSTANPTLL-----------LDS-ETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQL 696 (1023)
T ss_dssp -----------HHHHHHHHHHHCTTGG-----------GCH-HHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhcCchhh-----------cCH-HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 11111110 011110 000 0111 12345777888899999999999999888754
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCccc
Q 000049 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2629)
Q Consensus 1746 L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~ 1825 (2629)
..--.. .+...+..-|....+. | ..+++ -.+|.+.++++...+.+.. +
T Consensus 697 y~~~s~--------~i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~-------------~---- 744 (1023)
T 4hat_C 697 YRAVSS--------MISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKAR-------------N---- 744 (1023)
T ss_dssp HHHHHH--------HHHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCS-------------C----
T ss_pred HHHHHH--------HHHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCC-------------C----
Confidence 321111 1111111111110000 0 00000 0145556666666553311 0
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHhhccC-----ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CC
Q 000049 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSD-----VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SS 1897 (2629)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D-----~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~ 1897 (2629)
.+.....+ .+.++..+...-.. ....|-.....++..+.......+..++..+...-+..++ +.
T Consensus 745 ~~~~~~~~--------~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~ 816 (1023)
T 4hat_C 745 LDDVVKVL--------VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTE 816 (1023)
T ss_dssp HHHHHHHT--------HHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHh--------HHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccccc
Confidence 11111111 11111111111011 1233333333333333332223333344444444445555 36
Q ss_pred CHHHHHHHHHHHHHHHHHhccc-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchh--------hHHHh
Q 000049 1898 SSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS--------QLLSF 1962 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~--------~l~~~ 1962 (2629)
+++.|..-.+.+..+...+... ....++..+.-+++.+.+++-..++..+.+++.++... -+..|
T Consensus 817 ~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~ 896 (1023)
T 4hat_C 817 YPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNY 896 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 7999999999999988776543 23445566666778888888777777777776544321 11334
Q ss_pred HHHHHHHHHHHhcCC
Q 000049 1963 MDELIPTIRTALCDS 1977 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~ 1977 (2629)
+-.++..+...+.|.
T Consensus 897 ~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 897 FFIFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCc
Confidence 444444455555554
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-12 Score=184.56 Aligned_cols=739 Identities=12% Similarity=0.105 Sum_probs=409.1
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHHHHHhhcCCCCCCC--
Q 000049 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTD-- 1131 (2629)
Q Consensus 1056 ~~~~~~ll~~~~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~w~~~~~~~~~~-- 1131 (2629)
.+++.+.++.+++| |+..|.+|.+.|++.... |....+...+.......+...+-+|....+..=-.++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 34666677667777 789999999999876521 212222222221111125666766654443210022222
Q ss_pred ------h-HhHHHhhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH
Q 000049 1132 ------Y-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2629)
Q Consensus 1132 ------~-~~Ll~~l~-----~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2629)
+ ..++..+. .....+|++.+.+++.++. .||+.|++.+..+.+..... +....-....
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~~L 150 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNFYL 150 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHHHH
Confidence 3 45555544 2467899999999999864 68888888888888765321 1001122233
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC-ccchhhhHHHHHHHhcccCCChhhhhhHH
Q 000049 1199 LALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEKYDLVR 1277 (2629)
Q Consensus 1199 ~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g-~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr 1277 (2629)
+.+..+.+.+....... ......++..++..+ .... ....+..+.++..+... ....++
T Consensus 151 riL~~i~EEv~~~~~~~------~~~~~~r~~~lkd~m--------~~~~~~~i~~~~~~iL~~~~~~------~~~~l~ 210 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLK------TDVQIQKDNLVKDAI--------RANDMSDIVSFVYEMMLAYSNA------KNYGTV 210 (980)
T ss_dssp HHHHHHHHHHCCCCSCC------CHHHHHHHHHHHHHH--------HHHTHHHHHHHHHHHHHHHHHT------TCHHHH
T ss_pred HHHHHhHHHHHhccccc------CHHHHhhhHHHHHHH--------HhccHHHHHHHHHHHHHHHhcc------CCHHHH
Confidence 33333334332221100 000000111112211 1110 00112223333333321 122344
Q ss_pred HHHHHHHHHHHhhhccCCCc---chhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc--hHHHHHHH--HHHh---h
Q 000049 1278 EGVVIFTGALAKHLAKDDPK---VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRL--LDQL---M 1347 (2629)
Q Consensus 1278 ~~~v~~~~~La~~l~~~~~~---l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~--~~~ll~~l--l~~L---~ 1347 (2629)
..+ +.++..++.-.+.. -..+++.+.+.+.+ ++++.++++|+..++....+. ..+++..+ .+.+ .
T Consensus 211 ~~~---L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~ 285 (980)
T 3ibv_A 211 GLC---LQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQ 285 (980)
T ss_dssp HHH---HHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC--
T ss_pred HHH---HHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHh
Confidence 444 44444444321111 14677778888876 789999999999988664321 11222221 1111 1
Q ss_pred c-CCCHHHHHHHHHHHHHHHhh-----hCc------------chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000049 1348 K-SDKYGERRGAAFGLAGVVKG-----FGI------------SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2629)
Q Consensus 1348 ~-~~~~~~R~~Aa~~L~~l~~~-----lg~------------~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~ 1409 (2629)
. .+|.+.+.+-++.+..+... ..+ ..+ ..+++.+..+..++ +..+-..++..+..+.+.
T Consensus 286 ~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~ 362 (980)
T 3ibv_A 286 EQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVS 362 (980)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHH
Confidence 1 24445443333333222111 011 111 25677777777776 454444444444433332
Q ss_pred h---------ccCchhHHHHHHHHHHHHcCCC-----------C-----HHHHHHHHHHHHHHHHhhcHHhH-H----hh
Q 000049 1410 L---------GRLFEPYVIQMLPLLLVAFSDQ-----------V-----VAVREAAECAARAMMSQLSAQGV-K----LV 1459 (2629)
Q Consensus 1410 ~---------~~~~~~~v~~ilp~ll~~l~D~-----------~-----~~VR~aa~~al~~i~~~l~~~~v-~----~i 1459 (2629)
. ...+.+++..+++.++..+.-+ + ...|+... .+..+...+.+..+ . .+
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 363 LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence 1 2235678888898888866421 1 13566555 55555555555543 3 34
Q ss_pred HHHHHhhhc---cCChhhhHHHHHHHHHHHhhCchhh------hhhccchHHHHhhhhc-----CCCHHHHHHHHHHHHH
Q 000049 1460 LPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1460 lp~Ll~~L~---~~~w~~r~~a~~~L~~la~~~p~~l------~~~L~~ivp~L~~~L~-----D~~~~VR~aA~~aL~~ 1525 (2629)
.+.+-+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++||.||..+++++++
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 444444452 4579999999999999999876532 2567888888888866 8999999999999999
Q ss_pred HhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHH--hhcCCCHHHHHHHHHHHHHH
Q 000049 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVGNM 1603 (2629)
Q Consensus 1526 l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~--~L~d~~~~vr~~a~~~l~~l 1603 (2629)
.++.+... +..+..+++.+.. ++.+++.++|..|+.++.++
T Consensus 522 ys~~~~~~-------------------------------------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 522 YASFFDYE-------------------------------------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp TGGGGGTC-------------------------------------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHhcC-------------------------------------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 99877521 0112223333444 55666678899999999999
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcC---C------------------CHHHHHHHHHHHHHHHhhhCCC------Cch
Q 000049 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGEE------NFP 1656 (2629)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d---~------------------~~~VR~~A~~aL~~l~~~~g~~------~~~ 1656 (2629)
|+... ..+.||++.++..+..++.- + ..+-+-...+++|.++...+.. ++.
T Consensus 565 ~~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~ 642 (980)
T 3ibv_A 565 VKSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD 642 (980)
T ss_dssp HHHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 98754 36789999999888887762 1 1124667899999999877631 455
Q ss_pred hhHHHHHHHhc----cCCCh-HHH---HHHHHHHHHHHHhhCh---------hHHHhHhHHHHHhhc--CCChhhHHHHH
Q 000049 1657 DLVSWLLDALK----SDNSN-VER---SGAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDGYL 1717 (2629)
Q Consensus 1657 ~ll~~Ll~~L~----~~~~~-~~R---~~a~~~L~~i~~~~g~---------~~l~~llp~l~~~l~--~~~~~vR~~a~ 1717 (2629)
.+++.+++.+. ..... ..+ .....+++.+++++.. ..+.+.++.++..+. ..+..+|+.+.
T Consensus 643 ~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~ 722 (980)
T 3ibv_A 643 SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVR 722 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55555544432 22111 111 1345567777776631 244566777766665 46789999999
Q ss_pred HHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh---hHHHHHhhccCCCchHHHHH
Q 000049 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP---LLLPAVEDGIFNDNWRIRQS 1794 (2629)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~---~llp~l~~~l~d~~~~vR~s 1794 (2629)
.+|..+..++|.++.|+++.++..++..+.-.+ . ...+..++.++..|+.+..+ .+++.+...
T Consensus 723 ~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e--~-~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~----------- 788 (980)
T 3ibv_A 723 FTSGRIINVVGPDMLPKVPQLISILLNSIDMNE--L-VDVLSFISQLIHIYKDNMMEITNRMLPTLLMR----------- 788 (980)
T ss_dssp HHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT--H-HHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999999996554221 2 23566777788777765222 122222110
Q ss_pred HHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhc
Q 000049 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2629)
Q Consensus 1795 a~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~ 1874 (2629)
+-.++.. ...++ + +. + | ...+|++-...+..++.+
T Consensus 789 ----if~~l~~-----------~~~~t--d---~~------------r------------~-~~~l~r~~~~fl~~i~~~ 823 (980)
T 3ibv_A 789 ----IFSSLSA-----------APQGT--D---DA------------V------------K-QNDLRKSYISFILQLLNK 823 (980)
T ss_dssp ----HHHHTTC---------------C--C---HH------------H------------H-HHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHhcC-----------CCCCc--H---HH------------H------------H-HHHHHHHHHHHHHHHHhC
Confidence 0011100 00000 0 00 0 0 012455555556655553
Q ss_pred C-hhhH-----hhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc---------hhhhHHHHHhhhcCCCC
Q 000049 1875 T-PKTL-----KEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER---------VLPSIIPILSRGLKDPS 1936 (2629)
Q Consensus 1875 ~-~~~l-----~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~---------~l~~llp~L~~~L~d~~ 1936 (2629)
. +..+ +.+++.++..++.+..+ ++...+..|...+.+++...|+. +.. ++|.......+++
T Consensus 824 ~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~ 900 (980)
T 3ibv_A 824 GFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPN 900 (980)
T ss_dssp TCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC--
T ss_pred CchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCC
Confidence 2 2222 35677777777765443 66778999999999999876531 234 6666655554443
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-13 Score=188.61 Aligned_cols=501 Identities=15% Similarity=0.148 Sum_probs=342.7
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCc-chhh
Q 000049 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAV 1301 (2629)
Q Consensus 1223 ~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~-l~~i 1301 (2629)
..+.+++...|..++.-.. .+...|.+.-..++.++ +.+.++ +..+|..+...+..+++. ++. ..-+
T Consensus 20 ~~L~~~~~~~k~~~~~kli-~~~~~G~d~~~~~~~vi-~l~~s~------~~~~Krl~yl~l~~~~~~----~~e~~~l~ 87 (591)
T 2vgl_B 20 AELNNEKKEKRKEAVKKVI-AAMTVGKDVSSLFPDVV-NCMQTD------NLELKKLVYLYLMNYAKS----QPDMAIMA 87 (591)
T ss_dssp HHTTSSCHHHHHHHHHHHH-HHHHTTCCCGGGHHHHH-HTTSSS------CHHHHHHHHHHHHHHHHH----SHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHH-HHHHCCCChHHHHHHHH-HHhCCC------CHHHHHHHHHHHHHHccc----CchHHHHH
Confidence 4456666666655444333 23345665444444444 455432 244666665555555442 222 2445
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2629)
+..+.+.+.++++.+|..+..+++.+. ..+-.+.+++.+...+. +.+..+|+.|+.++..+... +++.+....+++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~ 163 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLD 163 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhh-ChhhcccccHHH
Confidence 788889999999999999988887663 22223455666665554 56789999999999999984 344444346889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~-~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2629)
.+.+.+.++ ++.+|.+|+.+++.++..-+.. +.+.....++.++..+.+.++..+-....++..+... .+.....++
T Consensus 164 ~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~~l 241 (591)
T 2vgl_B 164 SLRDLIADS-NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQSIC 241 (591)
T ss_dssp HHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHHHH
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 999999876 8999999999999988754432 2334456677777777778888776655554433211 223457889
Q ss_pred HHHHhhhccCChhhhHHHHHHHHHHHhh---CchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYC---APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~---~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
+.+...+.+.++.++..++.++..+... .|+.+......+.+.+..++ ++++.||..|+.+|+.++...++ .+..
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~ 319 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQ 319 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHH
Confidence 9999999999999999999999987642 34444444566777777655 47899999999999999876432 1222
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
.+..++...+|| ..+| .+++.+... . .......+++.+...+.+.++++|..+...++.++... .+.
T Consensus 320 ~~~~~~~~~~d~-~~Ir~~al~~L~~l--~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~------~~~ 387 (591)
T 2vgl_B 320 EIKVFFVKYNDP-IYVKLEKLDIMIRL--A---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV------EQS 387 (591)
T ss_dssp CTTTTSCCTTSC-HHHHHHHHHHHHHT--C---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC------HHH
T ss_pred HHHhheeccCCh-HHHHHHHHHHHHHH--C---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC------hhH
Confidence 222233233455 6666 788877542 1 22345678888999999999999999999999998743 244
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHh
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ 1696 (2629)
.+..++.+...+.+....++..+..+++.++...++ .....++.|.+.+.+......|..+++.+|+.+..... ...
T Consensus 388 ~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~ 464 (591)
T 2vgl_B 388 AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADE 464 (591)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHH
Confidence 567888899999999999999999999999876554 34667788888887666666787888888887655432 245
Q ss_pred HhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhh-cCC-CChhHHHHHHHHHH
Q 000049 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LAD-ENESVRDAALGAGH 1762 (2629)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~-L~d-~~~~VR~~al~al~ 1762 (2629)
++..+.+.+.+.++.+|..++.++..+....+....+ .+..+++. ..| .+.+||+.|...++
T Consensus 465 ~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 465 LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 5566666666778899999999999988876654323 33334443 345 56799998865543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-11 Score=180.95 Aligned_cols=695 Identities=12% Similarity=0.086 Sum_probs=405.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHHH
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWLL 1663 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~----~g~~~~~~ll~~Ll 1663 (2629)
.+...|+.|.+.+..+-.. + + ++..+...+. .+.++.+|..|+..|...+.. ++++....+-..++
T Consensus 28 p~~~~r~~Ae~~L~~~~~~---p-~---~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQDN---P-D---AWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHS---T-T---GGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC---c-h---HHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 3456899999999887542 1 2 2222222222 256789999999999887763 22222233444444
Q ss_pred HHhccCC--------ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhc-------
Q 000049 1664 DALKSDN--------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG------- 1728 (2629)
Q Consensus 1664 ~~L~~~~--------~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g------- 1728 (2629)
..+.+.. ....|...++.++.++....++.|+++++.+++.++ .++..++.++.++..++....
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 4443321 245788888999999888767778899999999886 566678888888888885443
Q ss_pred ---------cchHhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhch--hhhHHHHHhhccCCCchHHHHHHH
Q 000049 1729 ---------VQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS--LPLLLPAVEDGIFNDNWRIRQSSV 1796 (2629)
Q Consensus 1729 ---------~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~iv~~~~~~~--i~~llp~l~~~l~d~~~~vR~sa~ 1796 (2629)
..|..+++.+++.+...+.+ .+..++..+++++..++...+... .+.+++.+.+.+. .+..+|..++
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~ 255 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITL 255 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHH
Confidence 23556677777777777654 346788888888876654332111 0123333332111 1455677777
Q ss_pred HHHHHHHHhhcCCC-----c-------------------c-----ccccCCCCCCcccHHHHHHHHHH-------Hhc--
Q 000049 1797 ELLGDLLFKVAGTS-----G-------------------K-----ALLEGGSDDEGASTEAHGRAIIE-------VLG-- 1838 (2629)
Q Consensus 1797 ~ll~~ll~~~~~~~-----~-------------------k-----~~~~~~~ede~~~~~~~~~~l~~-------~Lg-- 1838 (2629)
+++..++..-.+.. . . .......+++.+-.....+.+.. .+.
T Consensus 256 ~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (1049)
T 3m1i_C 256 KCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESD 335 (1049)
T ss_dssp HHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77766654310000 0 0 00000011111111111111111 110
Q ss_pred ---hhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh------cChhhHhhhHHHHHHHHHHHhcCC------------
Q 000049 1839 ---RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA------NTPKTLKEIMPVLMNTLISSLASS------------ 1897 (2629)
Q Consensus 1839 ---~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~------~~~~~l~~~l~~Ll~~L~~~L~~~------------ 1897 (2629)
.+....++..+..+....+..|+..+++.|..++. .....+.++++.+++.++..+.-+
T Consensus 336 ~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 336 ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 11222344444444444577899999999999987 233556788899999888877421
Q ss_pred -------C---HHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhchhhHHHhHHH
Q 000049 1898 -------S---SERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2629)
Q Consensus 1898 -------~---~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2629)
+ +..|..+..+|..++...+..+++.+.+.+...+. ..+|..+.+++.++|.+...+....-.++++.
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~ 495 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT 495 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH
Confidence 1 13466778888888876666678888888887775 36789999999999987665544433455777
Q ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhCh--hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCc
Q 000049 1966 LIPTIRTALC-----DSILEVRESAGLAFSTLFKSAGM--QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2629)
Q Consensus 1966 ll~~l~~~L~-----d~d~~VR~~A~~al~~l~~~~g~--~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp 2038 (2629)
+++.+..... |+++.+|..++.+++++.+.+.. ..+..+++.+++.+.++..
T Consensus 496 v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~--------------------- 554 (1049)
T 3m1i_C 496 VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHE--------------------- 554 (1049)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCH---------------------
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH---------------------
Confidence 8887776432 35677777788888887765443 3455556666655544321
Q ss_pred ccchhhhcCCCchhHHHHHHHHHHHhCCChh--------hhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc-cc
Q 000049 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLN--------FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EG 2109 (2629)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~--------~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~ 2109 (2629)
++...++.++..+++.++..+. ||++.++..+...+..-+........++++.++...+. +.
T Consensus 555 ---------~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~ 625 (1049)
T 3m1i_C 555 ---------GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1049)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 1222355666666665555553 89999999888888766666667788899988876652 22
Q ss_pred ----HHHHHHHHHhhcC--------C----CChh-HHH--HHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHH
Q 000049 2110 ----VESLVSELLKGVG--------D----NQAS-IRR--SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2629)
Q Consensus 2110 ----~~~ll~~Ll~~l~--------d----~~~~-vR~--~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~ 2170 (2629)
+..+++.+...+. + .++. .+. ..+.++..++...+..+.++...++..++..+..
T Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~------ 699 (1049)
T 3m1i_C 626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA------ 699 (1049)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------
Confidence 3444443332211 0 0221 222 3345667777777888888887777666544421
Q ss_pred HHHHHHHHHHHhhcCc--------ccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCC
Q 000049 2171 AAAWEALSRVVASVPK--------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS 2242 (2629)
Q Consensus 2171 ~~a~~aL~~l~~~~~~--------~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~ 2242 (2629)
....+.......+. ..+....+.+.+.+...... ... +.. .....+.+++..++....+..
T Consensus 700 --~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~-----~~~---l~~-~~~~~~~~~l~~ll~~~~~~~ 768 (1049)
T 3m1i_C 700 --VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISK-----ARN---LDD-VVKVLVEPLLNAVLEDYMNNV 768 (1049)
T ss_dssp --HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHH-----CSC---HHH-HHHHTHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHh-----CCC---HHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 11111111111110 11112222222222221110 000 000 000112223333333332221
Q ss_pred HHHH-HHHHHHHHHHHhhcChhhhhhchhhhhHHHHHH----hcC--CCCHhHHHHHHHHHHHHHHhcCCCccCc----h
Q 000049 2243 AELR-EQAALGLGELIEVTSEQSLKEFVIPITGPLIRI----IGD--RFPWQVKSAILSTLSIIIRKGGIALKPF----L 2311 (2629)
Q Consensus 2243 ~~~r-~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~----l~~--~~~~~vk~~al~~L~~L~~~~~~~l~p~----l 2311 (2629)
+..| ..++.+++.++...| +.+.||++.+...+... +.+ ...++++...+..++.++.+++..+.+. +
T Consensus 769 ~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~ 847 (1049)
T 3m1i_C 769 PDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAF 847 (1049)
T ss_dssp GGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHH
T ss_pred cccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHH
Confidence 2111 357888999998888 67888888887666654 322 2468899999999999999887755331 3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 000049 2312 PQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2629)
Q Consensus 2312 p~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~ 2342 (2629)
..+....+.++..+++.+...+...+-.+..
T Consensus 848 ~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~ 878 (1049)
T 3m1i_C 848 KLFVDAICWAFKHNNRDVEVNGLQIALDLVK 878 (1049)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 4455666778888888888888888877643
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=183.09 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=266.7
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHH
Q 000049 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2629)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2629)
+|.+++.++++++.+|..|+.+|..+...-.++.++.++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 788888899999999999999999886532232221100 0 0135666
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--C--
Q 000049 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--N-- 1654 (2629)
Q Consensus 1581 L~~~L~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~--~-- 1654 (2629)
+.+.+.+. ++.+|..++.++.+++.. .++....+ -..++|.+..++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 67777766 788999999999998762 11111111 2468999999999999999999999999998743211 1
Q ss_pred chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhC----hhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g----~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
-...++.++..+.++.+...|..++.+++.++...+ .......+|.+++.+.+.++.+|..++.++..++......
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 135788888888865567789999999999986542 2234678999999999999999999999999988643221
Q ss_pred hHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCC
Q 000049 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2629)
Q Consensus 1731 f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~ 1809 (2629)
..... ..++|.++..+.+++..+|..+..++..+......
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 11111 23555666666555555555555554443221000
Q ss_pred CccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH-HHHHH
Q 000049 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2629)
Q Consensus 1810 ~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~ 1888 (2629)
..+.+.+ ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000000 01334444445667788999999999998876665544444 35777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhh-----
Q 000049 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2629)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~----- 1958 (2629)
.++..+.++++.+|..|+.+|+.++....+. +...++|.|...+.++++++|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 8888888889999999999999998753222 124578888889999999999999999998876433211
Q ss_pred -HHHhHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000049 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1959 -l~~~l~~l-----l~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2629)
..+|...+ ++.+...+.+++.++++.|..++..++
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12344333 566777777788889998888777665
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-10 Score=165.17 Aligned_cols=817 Identities=12% Similarity=0.106 Sum_probs=431.5
Q ss_pred hHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhC
Q 000049 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1576 ~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~l~~~~g 1651 (2629)
.+...+...+.. .++..|+.|.+.+..+-+. + ........++.++ ++.+|-.|+..|...+..++
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s---p--------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~ 75 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRSS---S--------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWN 75 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS---T--------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC---h--------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 344444333432 3678899999999887653 1 1333444555443 68999999999988887666
Q ss_pred CC----CchhhHHHHHHHhcc----CCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCCh-hhHHHHHHHHHH
Q 000049 1652 EE----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFKY 1722 (2629)
Q Consensus 1652 ~~----~~~~ll~~Ll~~L~~----~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~-~vR~~a~~~l~~ 1722 (2629)
++ ....+-..++..+.. ..+...|...+..++.++....++.|+.+++.+++.++..+. ..-...+..+..
T Consensus 76 ~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 76 NESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLS 155 (980)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 55 444455555555543 223457778888888888877666777777777776654322 111122222222
Q ss_pred hhhhhccchHhhHHhHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHH
Q 000049 1723 LPRSLGVQFQNYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2629)
Q Consensus 1723 L~~~~g~~f~p~l~~ii~~ll~~L~d~~~-~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ 1801 (2629)
+....... .+....+ .-|...+ ... +|... +..
T Consensus 156 i~EEv~~~--------------~~~~~~~~~~r~~~l---kd~--------------------------m~~~~---~~~ 189 (980)
T 3ibv_A 156 IGDEIADS--------------LVLKTDVQIQKDNLV---KDA--------------------------IRAND---MSD 189 (980)
T ss_dssp HHHHHCCC--------------CSCCCHHHHHHHHHH---HHH--------------------------HHHHT---HHH
T ss_pred hHHHHHhc--------------ccccCHHHHhhhHHH---HHH--------------------------HHhcc---HHH
Confidence 22211110 0000000 0010000 000 00000 000
Q ss_pred HHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhh
Q 000049 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2629)
Q Consensus 1802 ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~ 1881 (2629)
+ . +.++..+..+....+..++..++++++..+.-.|-.+-
T Consensus 190 i-------------------------------~--------~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i- 229 (980)
T 3ibv_A 190 I-------------------------------V--------SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLI- 229 (980)
T ss_dssp H-------------------------------H--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHH-
T ss_pred H-------------------------------H--------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhh-
Confidence 0 0 00111111111224557889999999998875543221
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-h-hh-----hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHh
Q 000049 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-V-LP-----SIIPILSRGLK-DPSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1882 ~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~-l~-----~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~ 1953 (2629)
.-+.+++.+...+.+ +..|..|+.||.+++.+.... . .+ .+.+.+..... +.|.+...+.|..+.++...
T Consensus 230 ~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 230 VNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 115677888888865 789999999999999875432 1 11 11122222222 46677665555444332211
Q ss_pred ---h--ch--------hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---C-----hhhhhhhHHHHHHh-
Q 000049 1954 ---A--GK--------SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA---G-----MQAIDEIVPTLLHA- 2011 (2629)
Q Consensus 1954 ---~--~~--------~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~---g-----~~~~~~ilp~Ll~~- 2011 (2629)
. .+ ....+++..+++.+..++.+++.+|-..+...+..+.... . .....++++.|++.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~l 387 (980)
T 3ibv_A 308 LVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAI 387 (980)
T ss_dssp HHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHH
Confidence 1 11 0223667789999999999998888877766665554321 1 12233444444433
Q ss_pred ---ccCcC----------chhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCC-ChhhhHh-hhH
Q 000049 2012 ---LEDDQ----------TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP-GLNFHLG-TIL 2076 (2629)
Q Consensus 2012 ---L~~~~----------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~-~l~~~l~-~il 2076 (2629)
+.-++ +.+..+..++.-+ ...+..++ +.|. .+..++- .+.
T Consensus 388 i~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l------------------------~~l~d~~~-~l~~~~~l~~~~~~i~ 442 (980)
T 3ibv_A 388 IKKMKYDESQEWDDDPDSEEEAEFQEMRKKL------------------------KIFQDTIN-SIDSSLFSSYMYSAIT 442 (980)
T ss_dssp HHTTSCCTTCCCCCCSSSSTHHHHHHHHHHH------------------------HHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred HHHccCCCccccccccchhHHHHHHHHHHHH------------------------HHHHHHHH-hcChHHHHHHHHHHHH
Confidence 32111 1111111111111 11122222 2332 2233222 333
Q ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHHHhhccc---------ccHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHH
Q 000049 2077 PALLSAMG---DDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKGVG-----DNQASIRRSSAYLIGYF 2139 (2629)
Q Consensus 2077 ~~Ll~~L~---~~~~~vr~~a~~al~~l~~~~~~---------~~~~~ll~~Ll~~l~-----d~~~~vR~~a~~~L~~l 2139 (2629)
+.+-+.+. +.++..++.+.-++..+...+.. ++++.+++.+...+. +..+.+|..++++++.+
T Consensus 443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 34444443 24577889999998888776532 234455555555433 67899999999999998
Q ss_pred HHhchhhhhhhHHHHHHHHHH--HhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCccc
Q 000049 2140 YKNSKLYLVDEAPNMISTLIV--LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217 (2629)
Q Consensus 2140 ~~~~~~~~~~~~~~il~~Ll~--ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 2217 (2629)
.+.... -..|++.+++.++. .+.+++..|+.+|+.++.++++.+++...+ +++.+.+.+...-.. . .
T Consensus 523 s~~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~~~~il~~l~~lL~~------~---~ 591 (980)
T 3ibv_A 523 ASFFDY-ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-YTESSLAMLGDLLNI------S---V 591 (980)
T ss_dssp GGGGGT-CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-SHHHHHHHTTGGGCC------C---C
T ss_pred HHHHhc-CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-HHHHHHHHHHHhhcC------c---C
Confidence 776532 23678888888888 788889999999999999999988765433 333333333221000 0 0
Q ss_pred ccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC--hhhhhhchhhhhHHHHHHhc----CCCCH-hHHH
Q 000049 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIG----DRFPW-QVKS 2290 (2629)
Q Consensus 2218 l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~----~~~~~-~vk~ 2290 (2629)
.+.-. +.+....+..+ ..++..+.+....+++|.++...+ ++.-..++..+.+|+++.+. ..... +-+.
T Consensus 592 ~~~~~-~~~~~~~~~~~---~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~ 667 (980)
T 3ibv_A 592 SPVTD-MDAPVPTLNSS---IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII 667 (980)
T ss_dssp CCCCC---CSSCCHHHH---HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH
T ss_pred CCCCc-ccccccchhhh---cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH
Confidence 01000 00111111111 122345567778999999997754 44566788888888776553 11111 1111
Q ss_pred ---HHHHHHHHHHHhcCCC---ccC---chHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHh-ccCChhHHHHHHHHhh
Q 000049 2291 ---AILSTLSIIIRKGGIA---LKP---FLPQLQTTFIKCLQD--STRTVRSSAALALGKLSA-LSTRVDPLVGDLLSSL 2358 (2629)
Q Consensus 2291 ---~al~~L~~L~~~~~~~---l~p---~lp~L~~~~~k~L~d--~~~~vR~~Aa~aLg~l~~-~~~~~~~ll~~Ll~~l 2358 (2629)
..+.+++.+.+..+.. ..| .+.+..+.++..+.. .+..||.++..++.+++. +++.+.|++|.+++.+
T Consensus 668 ~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~l 747 (980)
T 3ibv_A 668 SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISIL 747 (980)
T ss_dssp HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 3455667777654321 122 233566667666663 489999999999999954 4455666666666665
Q ss_pred h-cCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHH----HHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000049 2359 Q-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVL----KDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2629)
Q Consensus 2359 ~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L----~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2629)
- .-+..--...+..++.++...|..+ .+....++..+ ...+..+.. | .+.+.. ..
T Consensus 748 l~~~~~~e~~~fL~l~~qli~~f~~~~-~~~l~~ll~~l~~~if~~l~~~~~----------~-------td~~r~--~~ 807 (980)
T 3ibv_A 748 LNSIDMNELVDVLSFISQLIHIYKDNM-MEITNRMLPTLLMRIFSSLSAAPQ----------G-------TDDAVK--QN 807 (980)
T ss_dssp HHHCCTTTHHHHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTC---------------------CCHHHH--HH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCC----------C-------cHHHHH--HH
Confidence 3 2233335567889999999998875 33333333333 223332210 0 011110 00
Q ss_pred HHhhcCCCCchhhHhHHHHHHHHHhhCCcccc-C---ChhHHHHHHHHHhhhcC-CChhHHHhHHHHhHHHHhhhhh-c-
Q 000049 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAIS-M---SPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQ-S- 2506 (2629)
Q Consensus 2434 ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~-~---~~~~~~i~~~l~~~~~~-~~~~ir~~a~~alg~ll~~~~~-~- 2506 (2629)
..++..+..+..++..+-..++ . .+..+.++..+.....+ .++..++.|+..+.+++...+. .
T Consensus 808 ----------~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~ 877 (980)
T 3ibv_A 808 ----------DLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDG 877 (980)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC------
T ss_pred ----------HHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCc
Confidence 0122233344455554433333 1 23456677777755444 6788999999999999888643 2
Q ss_pred CCCCchhhHHHHHHHHhhcCCCCHHHHHH--------HHHHHHHHHhhCchhhhhhH-HHHHHH
Q 000049 2507 GPANTTVVVDILASVVSALHDDSSEVRRR--------ALSALKSVAKANPSAIMVHV-ALFGPA 2561 (2629)
Q Consensus 2507 ~~~~~~~l~~~l~~l~~~l~~~~~~vr~~--------al~~l~~~a~~~~~~v~~~l-~~l~p~ 2561 (2629)
-|+....+-++++.....+.+++.|.+-+ ....++.+..+.++....|| ..++|.
T Consensus 878 ~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~ 941 (980)
T 3ibv_A 878 IAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFPT 941 (980)
T ss_dssp -CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCc
Confidence 35555666557777777777777776655 33444445445555544555 334443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=183.47 Aligned_cols=350 Identities=13% Similarity=0.097 Sum_probs=253.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-Cc--chhhhh-cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GI--SSLKKY-GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1339 l~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l-g~--~~l~~~-~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
++.+++.+. +++...|..|+.+|..++... .+ ...... .+++.+.+.+.+..++..|..|+.++..++.+.....
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 445555553 445677888888887776421 11 111122 6788888888776578999999999998886332211
Q ss_pred hhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhh
Q 000049 1415 EPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYC 1488 (2629)
Q Consensus 1415 ~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~ 1488 (2629)
...+ ...+|.++..+.++++.||+.|..++..+....+.. .+ ..++|.++..+.+ .++.++..++.+|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 2222 358999999999999999999999999987653222 11 3578999999985 7899999999999999976
Q ss_pred C-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccc
Q 000049 1489 A-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2629)
Q Consensus 1489 ~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2629)
. |..-......++|.+..++.+.++.||..++++|..++.... +... .+
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~----------------------~~------- 230 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-DKIQ----------------------AV------- 230 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-HHHH----------------------HH-------
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-HHHH----------------------HH-------
Confidence 4 443333457899999999999999999999999999985321 0000 00
Q ss_pred cCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000049 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~l 1646 (2629)
....++|.+...+.+.++.+|..++.++++++.. .+....... ..+++.+..++.++++.+|..|+.+|+.+
T Consensus 231 -----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 231 -----IDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp -----HHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----HHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0113566777777788889999999999998763 211111111 25889999999999999999999999999
Q ss_pred HhhhCCC---Cc-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHHH
Q 000049 1647 IRGMGEE---NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1647 ~~~~g~~---~~-~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
+....+. .. ..++|.++..+.+.. ..+|..++.+++.++.....+.. ..++|.+++.+.+.++.+|..++
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 382 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAE-FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 8632211 11 367888888887654 55888999999999876443322 35789999999999999999999
Q ss_pred HHHHHhhhhh
Q 000049 1718 TLFKYLPRSL 1727 (2629)
Q Consensus 1718 ~~l~~L~~~~ 1727 (2629)
.++..++...
T Consensus 383 ~aL~~l~~~~ 392 (450)
T 2jdq_A 383 NGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988744
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-11 Score=167.13 Aligned_cols=761 Identities=9% Similarity=0.071 Sum_probs=402.0
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------
Q 000049 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2629)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~-------- 1118 (2629)
+.++.+.++-..+++++..+.+|++..|.+|++.|++.... |........+. ..+.+..++-+|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~iL--~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTIL--EFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 34455555667899999999999999999999999887521 22222222222 2234556665553
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcC---------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000049 1119 DIWDRYGYDFGTDY-SGLFKALSH---------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2629)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~---------~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2629)
..|...+.+-+..+ ..+++.+.+ .++.++++.+++++.++. .||+.|++.+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 34765543332334 556655432 367899999999999865 6888888888888876531
Q ss_pred CCCcchhhHHHHHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccC
Q 000049 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2629)
Q Consensus 1188 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~ 1267 (2629)
+...+......|..+++.+..-... . + ...-|....++. . +.++.+++++...+...
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~~~--------~-l---~~~r~~~lk~~L----~----~~~~~Il~ll~~iL~~~- 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFSSG--------Q-I---TQVKAKHLKDSM----C----NEFSQIFQLCQFVMENS- 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSHHH--------H-B---CHHHHHHHHHHH----H----HTCHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcccc--------c-c---cHHHHHHHHHHH----H----HHHHHHHHHHHHHhccc-
Confidence 1134566667777776554321100 0 0 011112222221 1 12566777777777542
Q ss_pred CChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHH-HhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHH-
Q 000049 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ- 1345 (2629)
Q Consensus 1268 ~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L-~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~- 1345 (2629)
. ...+...+...+++...+++...-.-..+++.+ ...+. +++++.++++|+..++..-.+...+.+..+++.
T Consensus 219 ~----~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 Q----NAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp C----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 233445556677777766643211113456666 35554 568999999999998865222222333333322
Q ss_pred ---h---h-cCCCHHH--------HHHHHHHHHHHHhhhCcchhh---h--------hcHHHHHHHHhcCCCCHHHHHHH
Q 000049 1346 ---L---M-KSDKYGE--------RRGAAFGLAGVVKGFGISSLK---K--------YGIAATLREGLADRNSAKRREGA 1399 (2629)
Q Consensus 1346 ---L---~-~~~~~~~--------R~~Aa~~L~~l~~~lg~~~l~---~--------~~i~~~L~~~l~~~~~~~~R~~A 1399 (2629)
+ . ...+... -..-..+++.+...+|..... . ...+..+..+.... +...=...
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 1 1 1101100 012334444444433322111 0 01223334444443 44433334
Q ss_pred HHHHHHHHHHhc-------------------------cCchhHHHHHHHHHHHHcCCCCH--------------------
Q 000049 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQVV-------------------- 1434 (2629)
Q Consensus 1400 l~al~~La~~~~-------------------------~~~~~~v~~ilp~ll~~l~D~~~-------------------- 1434 (2629)
+.....+.+.+- ..+.|++.++...++..+.-|+.
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 333333443221 12566777777777776543211
Q ss_pred --HHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCch-hhhhhccchHHHHhhhh
Q 000049 1435 --AVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2629)
Q Consensus 1435 --~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L 1508 (2629)
.+++..-+++..+. .+. .+....+++.+-+.+.. .+|+...+.|.++|+++.+... .-...++.+++.|+.+.
T Consensus 452 ~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 12333334443332 333 33445566666555543 4699999999999999866543 44578999999999888
Q ss_pred cCC-----CHHHHHHHHHHHHHHhhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHH
Q 000049 1509 TDT-----HPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2629)
Q Consensus 1509 ~D~-----~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2629)
..+ .+.|+...+..+|+..+.+.+ + .++.++..+
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L--------------------------------------- 571 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL--------------------------------------- 571 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH---------------------------------------
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHH---------------------------------------
Confidence 654 456777777889888776542 2 224444444
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-
Q 000049 1582 HRGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2629)
Q Consensus 1582 ~~~L~d~~~~vr~~a~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~- 1654 (2629)
.+.+.+.+..++.+|+.++..+|..+.. +.+..||++.++..+.....+=.++-...-..++|.++...+.+.
T Consensus 572 ~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 572 FEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp HHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 4444555557777788888777765432 123468999999888888877778888889999999999888642
Q ss_pred chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh--ChhHHHhHhHHHHHhhcCCChhhHH--HHHHHHHHhhhhhccc
Q 000049 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVRD--GYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~--g~~~l~~llp~l~~~l~~~~~~vR~--~a~~~l~~L~~~~g~~ 1730 (2629)
.+.++..|+.... +.+..+.... +.+.+ .+++ .++. ..+.+...++..+|..
T Consensus 652 ~~~~i~~Lm~~~~------------~~w~~l~~~~~~~~~~~-----------~d~~-~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 652 QEHLIEKYMLLPN------------QVWDSIIQQATKNVDIL-----------KDPE-TVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp HHHHHHHHTHHHH------------HHHHHHHHHHHHCGGGG-----------GCHH-HHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHhhcCchhc-----------cChH-HHHHHHHHHhhhHHHHhhcchh
Confidence 2333333332211 0111121110 11100 0110 0111 2344666788899999
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCC
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~ 1810 (2629)
|.|++..+.+-+++.-+ ..-..+...+..-|....+. ...+++ -.+|.+.+.++...+.+
T Consensus 708 f~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~----- 767 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR----- 767 (1073)
T ss_dssp GHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc-----
Confidence 99999998887664321 11111111111111110000 000000 01455666666655422
Q ss_pred ccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc-cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHH
Q 000049 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889 (2629)
Q Consensus 1811 ~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~-~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~ 1889 (2629)
.++ .+. +.+.+-..-.+.++...-... .-.+++|-.....++..+....+..+..++..+...
T Consensus 768 --------~~~----~~~----v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~ 831 (1073)
T 3gjx_A 768 --------SND----PQM----VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 831 (1073)
T ss_dssp --------CSC----HHH----HHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHH
T ss_pred --------CCC----HHH----HHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 010 111 111111111111111111100 012234444444444444443444444444444444
Q ss_pred HHHHhc---CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000049 1890 LISSLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1890 L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2629)
-+..++ +..++.|..-.+.+..+...+.... ...++..+.-+++.+.+++-..+...+.+++.+
T Consensus 832 Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 832 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 455565 5689999999999999988865432 233555555566777766666555555555544
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-12 Score=183.57 Aligned_cols=506 Identities=11% Similarity=0.063 Sum_probs=322.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchh-hhhhccc
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPK 1499 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ 1499 (2629)
-+|.++..+.+++..+|.++...++..-.. ......+|.++..|.+.+..+|..|+.+|+.++...+.. .....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 366778888888889998887776644211 112567888999888889999999999999998643222 1112356
Q ss_pred hHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000049 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1500 ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
+++.|+..|.+ .++.+|..|+.+|..++..-.+ +. .+. -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~---------------------~~---~i~------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG---------------------LL---AIF------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH---------------------HH---HHH------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh---------------------HH---HHH------------HcCCH
Confidence 88999988875 4899999999999998753110 00 000 01346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 1653 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~---- 1653 (2629)
|.|.+.+.+.+..+|..|+.++.+++..... ....+ -...++.+..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777778777889999999999999875211 11112 1468899999999999999999999999887521110
Q ss_pred CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh-hHH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~-~~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
.-...++.|+..+++......+..++..+..++..-.. ..+ ...+|.++..+.+.+..++..++.++..++......
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 11356778888887665443344455556655532111 111 346788888888889999999999999998765431
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc--h-h-hhHHHHHhhccCC-Cch-HHHHHHHHHHHHHHH
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--S-L-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1804 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~--~-i-~~llp~l~~~l~d-~~~-~vR~sa~~ll~~ll~ 1804 (2629)
.....++|.+.+.+.+++..+|..|..++..+....... . + ...+|.+.+.+.+ .++ .+|..++.+++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 123568999999999999999999999988775421110 0 0 1145555555543 233 788999888888731
Q ss_pred hhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCcc-HHHHHHHHHHHHHHHhcChhhHhhhH
Q 000049 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM 1883 (2629)
Q Consensus 1805 ~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2629)
. ..+ .+.....+... ..++.+...+.+.+ +.+|..|+.+++.++.+... ...+.
T Consensus 473 ~--------------~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~ 527 (780)
T 2z6g_A 473 R--------------HQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLR 527 (780)
T ss_dssp S--------------STT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHH
T ss_pred c--------------Cch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 1 001 00011112111 12344444444443 58999999999999864322 12111
Q ss_pred -HHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCCh
Q 000049 1884 -PVLMNTLISSLASSS----------------------SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1937 (2629)
Q Consensus 1884 -~~Ll~~L~~~L~~~~----------------------~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1937 (2629)
..+++.++..+.+.+ .+++..++.+|+.++...... .....+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 123444444443322 456667777887765311100 124567888888999999
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHhHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000049 1938 SRRQGVCIGLSEVMASAGKSQLLSFMD--ELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1938 ~vR~~a~~aL~~li~~~~~~~l~~~l~--~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
+++..++.+|+.+... ......+. ..++.+...+.+++++||..|..++..+....+
T Consensus 608 ~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999887532 22222332 367888899999999999999999999876544
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-13 Score=180.06 Aligned_cols=383 Identities=13% Similarity=0.091 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH--HhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCch
Q 000049 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v--~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
....++.++..+.++++.+|..|..+++.++...... .+ ..++|.+++.|.++ ++.++..++.+|+.++...+.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3345778888888889999999999998886542111 11 46899999999987 899999999999999986654
Q ss_pred hhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h-h-H-HhHHHHHHhccCCCChhHH-HHHHHHHhcc-
Q 000049 1492 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTT- 1564 (2629)
Q Consensus 1492 ~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~-i-~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~- 1564 (2629)
..... -.+++|.++.++.++++.||..|+++|+.++..-.. . . + ...+|.|+..+.+++..++ .++.++....
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 43222 257899999999999999999999999999864211 1 1 1 4688999999988777766 5666554321
Q ss_pred cc-ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1565 FV-NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 1642 (2629)
Q Consensus 1565 ~~-~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2629)
.. ..........++|.|.+.+.+.++.++..++.++++++.. .+....... ..+++.+..++.++++.+|..|+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 11 2223344567899999999999999999999999999863 211122222 2688999999999999999999999
Q ss_pred HHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-HhHhHHHHHhhcCCChhhHH
Q 000049 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 1714 (2629)
Q Consensus 1643 L~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~ 1714 (2629)
|+.++...+.. .-..++|.|+..+.+. ...+|..++.+++.++...... .+ ..++|.++..+.++++.+|.
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 99998643221 1136788888888766 4668889999999987632211 11 45788999988889999999
Q ss_pred HHHHHHHHhhhhhcc--chHhhHH--hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc----------hhh-----h
Q 000049 1715 GYLTLFKYLPRSLGV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----L 1775 (2629)
Q Consensus 1715 ~a~~~l~~L~~~~g~--~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~----------~i~-----~ 1775 (2629)
.++.+++.++...+. ....++- .++|.+...+.+.++.+|..++.++..++...... ... .
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 999999999886544 4444443 38999999999999999999999999887654321 111 1
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
.++.+.....+.+..++..+..++..++
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 3666777778888889888888887764
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-12 Score=176.84 Aligned_cols=387 Identities=14% Similarity=0.107 Sum_probs=278.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
-++.+++.|. ++++..|..|+..|..++.+.. ...+...++++.|.+.+.+..++..|..|+.+++.++.+.+...
T Consensus 75 ~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3566666664 4467899999999999887543 12223347889999999877459999999999999987433211
Q ss_pred hhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhh-ccCChhhhHHHHHHHHHHHhh
Q 000049 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2629)
Q Consensus 1415 ~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~r~~a~~~L~~la~~ 1488 (2629)
...+. ..+|.++..+.++++.||+.|..++..+...-+.. .+ ...+|.++..+ .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 12222 58999999999999999999999999997643321 11 24789999999 667899999999999999987
Q ss_pred CchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcccccc
Q 000049 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2629)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2629)
.|.........++|.|..++.+.++.|+..|+++|..++.... ...+. +.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~----------------------~~------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQA----------------------VI------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHH----------------------HH-------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHH----------------------HH-------
Confidence 5554444568899999999999999999999999999985321 11110 00
Q ss_pred CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000049 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l 1646 (2629)
-..++|.|...+.+.++.++..++.++++++.. .+...... -..++|.+..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 013566777777778889999999999999863 21111111 135788899999988 999999999999999
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHHH
Q 000049 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1647 ~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
+....+. .-..++|.|+..+.+. +...|..++.+++.++.....+.. ...++.++..+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632211 1136788888888776 456888899999999876444422 35788999999999999999999
Q ss_pred HHHHHhhhhhcc-------c---hHhhHHh--HHHHHHhhcCCCChhHHHHHHHHHHH
Q 000049 1718 TLFKYLPRSLGV-------Q---FQNYLQQ--VLPAILDGLADENESVRDAALGAGHV 1763 (2629)
Q Consensus 1718 ~~l~~L~~~~g~-------~---f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2629)
.++..+...... . +...+.. .++.+.....+++++++..|...+..
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~ 493 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 493 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999865433 1 2222221 35556666667777777766555444
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-12 Score=179.47 Aligned_cols=492 Identities=12% Similarity=0.071 Sum_probs=325.5
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch-hh-hhcH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS-LK-KYGI 1379 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~-l~-~~~i 1379 (2629)
++.+++.|.++++++|..++..+...-.. .-....++.+...|. +++..+|..|+.+|..+........ +. ...+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~--~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH--HHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56778888889999998888776543111 112456777777665 4567899999999999987432211 11 1256
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000049 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2629)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2629)
++.|.+.+.+..++..|..|+.+|..++..... ...+ ...+|.++..+.++++.||..|..++..++...... .
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 777777776544788999999999887753211 1111 158999999999999999999999999997753322 1
Q ss_pred H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh-hccchHHHHhhhhcCCCHH-HHHHHHHHHHHHhhhcC
Q 000049 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPK-VQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~-~L~~ivp~L~~~L~D~~~~-VR~aA~~aL~~l~~~~~ 1531 (2629)
+ ...+|.+++.+.+.+++++..++.+|..++...++.... .-...++.|+.++.+.+++ ++..++.+|..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 468999999999999999999999999888654432111 1135678888888876554 56688889998885322
Q ss_pred ch-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000049 1532 NP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2629)
Q Consensus 1532 ~~-~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~ 1607 (2629)
+. .+ ...+|.|+..+.+++..++ .++..+....... ........++|.|.+.+.+.++++|..++.++++++..
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~- 429 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 429 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC-TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc-hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-
Confidence 21 22 3568999999988776654 5555544311000 01112356889999999999999999999999999763
Q ss_pred CCCCccc-chHhhhHHHHHHHhcC-CC-HHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCChHHHHH
Q 000049 1608 TEPKDMI-PYIGLLLPEVKKVLVD-PI-PEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2629)
Q Consensus 1608 ~~~~~l~-~~l~~ll~~L~~~L~d-~~-~~VR~~A~~aL~~l~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~R~~ 1677 (2629)
.++... -.-...++.+..++.+ .+ ..+|..|+.+|+.++...++. .-...+|.|.+.+.+.....+|..
T Consensus 430 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~ 508 (780)
T 2z6g_A 430 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508 (780)
T ss_dssp -CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHH
Confidence 111100 0112466777777765 23 489999999999987533321 013457888888887765568888
Q ss_pred HHHHHHHHHHhhChh-HH--HhHhHHHHHhhcCCC----------------------hhhHHHHHHHHHHhhhhhccchH
Q 000049 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQR----------------------ASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1678 a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~~----------------------~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
++.+|+.++..-... .+ ..++|.+++.+.+.+ ..+++.++.++..++..- ...
T Consensus 509 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~~ 586 (780)
T 2z6g_A 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HNR 586 (780)
T ss_dssp HHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hhH
Confidence 999999887522111 11 245666666554322 456777788888776421 111
Q ss_pred hhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchhhh--HHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSLPL--LLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1733 p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i~~--llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
..+ ...+|.+...+.+.++.++..+..++..+...-. ...+.. .++.+.+.+.+.+..+|..+..++..+.
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 112 3478999999999999999999988887753210 111111 4667778888999999999999998875
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=175.18 Aligned_cols=382 Identities=14% Similarity=0.109 Sum_probs=282.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-H--HhH--HhhHHHHHhhhccCC-hhhhHHHHHHHHHHHhhCchhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-A--QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~--~~v--~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
.-+|.++..+.++++.+|..|..+++.++..-. + ..+ ..++|.+++.|.+++ +.++..++.+|+.++...+...
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 457888888888899999999999988876443 1 111 468999999998876 9999999999999998766543
Q ss_pred hhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhH--HhHHHHHHhcc-CCCChhHH-HHHHHHHhcccc
Q 000049 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 1566 (2629)
Q Consensus 1494 ~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l-~d~~~~~r-~al~~L~~~~~~ 1566 (2629)
.... .+.+|.|+.++.++++.||..|+++|+.++..-.. ..+ ...+|.|+..+ .+++..++ .++.++......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3222 36899999999999999999999999999864221 112 35788999999 56666665 555555432111
Q ss_pred -ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1567 -~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
..........++|.|.+.+.+.++.++..++.++++++.. ....... .-..+++.+..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2222344567899999999999999999999999999853 2111111 12357899999999999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHH
Q 000049 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGY 1716 (2629)
Q Consensus 1645 ~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a 1716 (2629)
.++...... .-..++|.|...+.+.....+|..++.+++.++...... . + ..++|.+++.+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998733211 114578888888876635668889999999998642221 1 1 3678999999988899999999
Q ss_pred HHHHHHhhhhhccchHhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc----------hhh-----hHHHH
Q 000049 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----LLLPA 1779 (2629)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~----------~i~-----~llp~ 1779 (2629)
+.+++.++.........++ ..+++.+...+.+.++.++..++.++..++...... ... ..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987555555665 358999999999999999999999999887644220 111 13455
Q ss_pred HhhccCCCchHHHHHHHHHHHHHH
Q 000049 1780 VEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1780 l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
+.....+.+..++..+..++..+.
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHC
Confidence 666667778888888888777653
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=163.84 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=169.0
Q ss_pred cCCCHHHHHHHHHHHHH-HHhhhCcc---hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCch-hHHHHH
Q 000049 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2629)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~-l~~~lg~~---~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~-~~~~-~~v~~i 1421 (2629)
.+.+|..|+.|...|.. ++.+.+.- ......+++.|.+.+.++.|..+|.+|+.+++.++++++ ..|. +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 56789999999999999 88653221 111236788899999433489999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---h-HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc---hhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~ 1494 (2629)
+|.++..++|..+.||+++..++..++..+++. . ...+++.++..|++++|++|.+++.+|+.++...+ ..+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 999999999999999999999999999987543 2 56899999999999999999999999999998766 6688
Q ss_pred hhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHH
Q 000049 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2629)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2629)
.++ +.++|.+.+++.|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987777666665
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-12 Score=173.53 Aligned_cols=391 Identities=14% Similarity=0.106 Sum_probs=283.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc-hHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCC
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
...+|.+...+.+.++.+|..|+..+..++..-..+ .... .-..++|.+...+.++ ++.+|..|+.+|+.++....+
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~-~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP-PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC-SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 345778888888888999999999999987642121 1111 1246889999999987 899999999999999873221
Q ss_pred C--C--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh--hH-H-HhHhHHHHHhhcCCChhhHHHHHHHHHHhh
Q 000049 1653 E--N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2629)
Q Consensus 1653 ~--~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~--~~-l-~~llp~l~~~l~~~~~~vR~~a~~~l~~L~ 1724 (2629)
. . -...+|.|+..+.+. +..+|..++.+|+.++..... +. . ...+|.+++.+.+.++.+|..++.++..++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 1 146788888888765 456888899999998754211 11 1 467899999999999999999999999999
Q ss_pred hhh-ccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh---chhh-hHHHHHhhccCCCchHHHHHHHHHH
Q 000049 1725 RSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP-LLLPAVEDGIFNDNWRIRQSSVELL 1799 (2629)
Q Consensus 1725 ~~~-g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~---~~i~-~llp~l~~~l~d~~~~vR~sa~~ll 1799 (2629)
... +..-......++|.+...+.++++.+|..+..++..+...... ..++ .++|.+...+.+.+|.+|..++.++
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 754 2222345577999999999999999999999999887743221 1111 3678888888899999999999999
Q ss_pred HHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhH
Q 000049 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2629)
Q Consensus 1800 ~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l 1879 (2629)
+.+... . + .....+.+ ..+++.+...+.+.+..+|..|+.+++.++...+...
T Consensus 324 ~~l~~~-------------~---~----~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 376 (530)
T 1wa5_B 324 GNIVTG-------------N---D----LQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376 (530)
T ss_dssp HHHTTS-------------C---H----HHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHcC-------------C---H----HHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 987421 0 0 01111111 1245556666777889999999999999998766555
Q ss_pred hhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 000049 1880 KEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2629)
Q Consensus 1880 ~~~l-~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~--~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li 1951 (2629)
..++ ..+++.++..+.++++.+|..|+.+|+.++...+. . ....++|.|...+.++++.++..++.+|..++
T Consensus 377 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 377 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4444 24677788888888999999999999999876443 2 12347788888899999999999999999887
Q ss_pred Hhhchhh------HHHhHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1952 ASAGKSQ------LLSFMD-----ELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1952 ~~~~~~~------l~~~l~-----~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
....... ..++.. ..++.+...+.++++++++.|..++..++.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 6543210 112222 246777778889999999998888776653
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-11 Score=171.84 Aligned_cols=461 Identities=11% Similarity=0.075 Sum_probs=316.8
Q ss_pred hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC-cch
Q 000049 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISS 1373 (2629)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-----~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~~ 1373 (2629)
..++.++..|+++++.+|..++.+|..+....... ....++.++..|..+++...|..|+.+|..+..... ...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 45788888899999999999999998887543211 236788888888776678899999999998775422 122
Q ss_pred hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000049 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
+.....++.|.+.+++. ++..|..|+.++..++.........+. ...+|.++..+.++++.++..+..++..+.....
T Consensus 94 i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 22336788898999876 789999999999999976543222332 3689999999999999999988888888764222
Q ss_pred HH--hH--HhhHHHHHhhhccCC-hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1453 AQ--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1453 ~~--~v--~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.. .+ ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..++
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 11 11 345778888877654 45566788888888764322111111357899999999999999999999999998
Q ss_pred hhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000049 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2629)
Q Consensus 1528 ~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~ 1607 (2629)
....+.. ....++|.|.+.+.+.++++|..++.++++++..
T Consensus 253 ~~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~- 293 (644)
T 2z6h_A 253 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 293 (644)
T ss_dssp GGCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-
T ss_pred hcchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 6432100 0123566666677777788888899999888763
Q ss_pred CCCCccc-chHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCChHHHHH
Q 000049 1608 TEPKDMI-PYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2629)
Q Consensus 1608 ~~~~~l~-~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~R~~ 1677 (2629)
.+.... -.-...++.|..++.+. .+.+|..|+.+|+.++...++. .....+|.|.+.+.++....+|..
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~ 372 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHH
Confidence 111000 01123677777777653 3799999999999997643321 013568888888887655567888
Q ss_pred HHHHHHHHHHhhChh-HH--HhHhHHHHHhhcCC----------------------ChhhHHHHHHHHHHhhhhhccchH
Q 000049 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1678 a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~----------------------~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
++..++.+...-... .+ ...+|.+++.+.+. +..+++.++.++..++..-.. .
T Consensus 373 a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~ 450 (644)
T 2z6h_A 373 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--R 450 (644)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--H
T ss_pred HHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--H
Confidence 888888876532111 11 34566666655442 345666777777777653321 2
Q ss_pred hhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchhh--hHHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1733 p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i~--~llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
..+ ...+|++...+.+.+++++..+..++..+...-. ...+. ..++.+.+.+.+++..+|..+..+++.+.
T Consensus 451 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 451 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 223 2478999999999999999999888877653200 01111 14567777888999999999999988874
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-08 Score=145.71 Aligned_cols=755 Identities=12% Similarity=0.093 Sum_probs=399.5
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhc--cccccCChhhhh----hH
Q 000049 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQT--TFVNTVDAPSLA----LL 1577 (2629)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~--~~~~~~~~~~l~----~i 1577 (2629)
+..+.++++..|..|.+-|.++-+. |+.-.++..++.. +.+..+| .|+..+-.. ...+.+...... .+
T Consensus 22 v~~ly~p~~~~r~~A~~~L~~~q~s---p~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~L 96 (1023)
T 4hat_C 22 VSTFYQGSGVQQKQAQEILTKFQDN---PDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFV 96 (1023)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHC---TTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHcC---ccHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 3334445555777777777777543 3222222223222 2234566 343333220 111223332222 23
Q ss_pred HHHHHHhhcCC-----CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1578 VPIVHRGLRER-----SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1578 ~p~L~~~L~d~-----~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
+..+.+...+. ..-++.+.+.++..++... .|. ..+.+++-+...+.. .+.........+..+.+.+.+
T Consensus 97 l~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~-~p~----~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~ 170 (1023)
T 4hat_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE-WPQ----NWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFD 170 (1023)
T ss_dssp HHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHH-TTT----TCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh-Chh----hchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence 33333322221 3567888999999988763 332 356677777777754 345566667777777665432
Q ss_pred ---C----------------CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHH-HhhcCCCh
Q 000049 1653 ---E----------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDII-RNCSHQRA 1710 (2629)
Q Consensus 1653 ---~----------------~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~-~~l~~~~~ 1710 (2629)
+ .++.+++.+...+.+.........+..++...+.-.....+ .++++.+. ..+. ++
T Consensus 171 ~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~ 248 (1023)
T 4hat_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SP 248 (1023)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SH
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CH
Confidence 1 12334444445554443343445566667766665555433 46777777 5553 57
Q ss_pred hhHHHHHHHHHHhhh-hh-cc--chHhhHHhHHHHHHhhc----CCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhh
Q 000049 1711 SVRDGYLTLFKYLPR-SL-GV--QFQNYLQQVLPAILDGL----ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782 (2629)
Q Consensus 1711 ~vR~~a~~~l~~L~~-~~-g~--~f~p~l~~ii~~ll~~L----~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~ 1782 (2629)
.+|..++.++..+.. .. ++ .+...+..+++.++..+ -.....++ +.+..
T Consensus 249 ~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~-----------------------~~~~~ 305 (1023)
T 4hat_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLK-----------------------ATYAN 305 (1023)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHH-----------------------HHHhc
Confidence 799999999998875 22 23 23333333333332211 11111111 11111
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHH
Q 000049 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862 (2629)
Q Consensus 1783 ~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~ 1862 (2629)
+. +++......-..++..+....... .+ .. ++ ... +. ...+..+..+-...+.++-.
T Consensus 306 ~~-~~D~e~~~~l~~l~~~~~e~~~~l-----i~--~~-~~-----~~~-~l--------~~~l~~Ll~~~~~~d~ei~~ 362 (1023)
T 4hat_C 306 AN-GNDQSFLQDLAMFLTTYLARNRAL-----LE--SD-ES-----LRE-LL--------LNAHQYLIQLSKIEERELFK 362 (1023)
T ss_dssp TC-TTHHHHHHHHHHHHHHHHHHHGGG-----GT--SC-GG-----GHH-HH--------HHHHHHHHHHTTSSCHHHHH
T ss_pred cc-cchHHHHHHHHHHHHHHHHHHHHH-----Hh--CC-cc-----hhH-HH--------HHHHHHHHHhhCCCcHHHHH
Confidence 10 111111111112222222111100 00 00 00 000 00 01111222222233556667
Q ss_pred HHHHHHHHHHhc------ChhhHhhhHHHHHHHHHHHhcCCC-------H------------H--HHH-HHHHHHHHHHH
Q 000049 1863 AALHVWKTIVAN------TPKTLKEIMPVLMNTLISSLASSS-------S------------E--RRQ-VAGRALGELVR 1914 (2629)
Q Consensus 1863 aA~~~l~~l~~~------~~~~l~~~l~~Ll~~L~~~L~~~~-------~------------~--~R~-~A~~~L~~lv~ 1914 (2629)
.+++.|..+... ....+++++..+++.++..+.-|. . + ... ....+|..+..
T Consensus 363 ~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~ 442 (1023)
T 4hat_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH 442 (1023)
T ss_dssp HHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc
Confidence 777888777652 234577888899999998877543 0 1 111 11256666655
Q ss_pred HhccchhhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhc-----CCcHHHHHHHHH
Q 000049 1915 KLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC-----DSILEVRESAGL 1987 (2629)
Q Consensus 1915 ~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~-----d~d~~VR~~A~~ 1987 (2629)
-.+....+.+++.+.+.+.+ .+|..|.++|.++|.+.....++...++++++++.+...+. |+...||..++.
T Consensus 443 l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~ 522 (1023)
T 4hat_C 443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMY 522 (1023)
T ss_dssp HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHH
Confidence 55666777788888776654 68999999999999998877766677899999999888775 356678888889
Q ss_pred HHHHHHHHhC--hhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC
Q 000049 1988 AFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065 (2629)
Q Consensus 1988 al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g 2065 (2629)
++|.+.+.+. +..+..++..+++.+.++..+ +...++.|+..|++.++
T Consensus 523 ~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~------------------------------v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 523 VVGQYPRFLKAHWNFLRTVILKLFEFMHETHEG------------------------------VQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHH------------------------------HHHHHHHHHHHHHHHHH
Confidence 9998877654 344556666666666433210 11123455555555444
Q ss_pred CCh--------hhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccc-HHHHHHHHHhhcCCC------------
Q 000049 2066 PGL--------NFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG-VESLVSELLKGVGDN------------ 2124 (2629)
Q Consensus 2066 ~~l--------~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~-~~~ll~~Ll~~l~d~------------ 2124 (2629)
..+ .||++.++..+......-++.-+..+.++++.++...+... ...++..|+..+...
T Consensus 573 ~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~ 652 (1023)
T 4hat_C 573 YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANP 652 (1023)
T ss_dssp HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCT
T ss_pred HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence 333 57888888888887776667777889999999998775422 333443333222110
Q ss_pred ----Ch--hHH-HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHH
Q 000049 2125 ----QA--SIR-RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2629)
Q Consensus 2125 ----~~--~vR-~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~ 2197 (2629)
++ ..+ ...+.++..++...+..+.+++..+++.++...+- ..+.+.
T Consensus 653 ~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~--------~s~~i~------------------- 705 (1023)
T 4hat_C 653 TLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA--------VSSMIS------------------- 705 (1023)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH--------HHHHHH-------------------
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH--------HHHHHH-------------------
Confidence 00 001 11223333333333344444444444333332210 000000
Q ss_pred HHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHH
Q 000049 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2629)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li 2277 (2629)
+.+.. +|. ...+ . | ...++ ..+|....+.+...+..... .......+++||+
T Consensus 706 ~~~~~----------~g~------~~~~--~---~-~~r~~----r~ik~~il~l~~~~i~~~~~--~~~~~~~~~~~l~ 757 (1023)
T 4hat_C 706 AQVAA----------EGL------IATK--T---P-KVRGL----RTIKKEILKLVETYISKARN--LDDVVKVLVEPLL 757 (1023)
T ss_dssp HHHHH----------HCG------GGGG--S---H-HHHHH----HHHHHHHHHHHHHHHHHCSC--HHHHHHHTHHHHH
T ss_pred HHHHh----------CCc------hhhc--c---H-HHHHH----HHHHHHHHHHHHHHHhcCCC--HHHHHHHhHHHHH
Confidence 00000 000 0000 0 0 00011 13455556666666655531 1222233444444
Q ss_pred HHh-cCC--CCHhHH-HHHHHHHHHHHHhcCCCccCchHHHHHHHHH----HcCC---CCHHHHHHHHHHHHHHHhcc--
Q 000049 2278 RII-GDR--FPWQVK-SAILSTLSIIIRKGGIALKPFLPQLQTTFIK----CLQD---STRTVRSSAALALGKLSALS-- 2344 (2629)
Q Consensus 2278 ~~l-~~~--~~~~vk-~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k----~L~d---~~~~vR~~Aa~aLg~l~~~~-- 2344 (2629)
..+ .|. ..+..| ...|.+.+.++.++|..+.+.+|.+...+.. .+++ ..++.|..-.+-+..+....
T Consensus 758 ~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~ 837 (1023)
T 4hat_C 758 NAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFA 837 (1023)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChH
Confidence 332 210 122222 5678888899999998888888887776543 3444 27999999888888874322
Q ss_pred -----C--ChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCC----cC----hHHHHHHHHHHHHhhcCC
Q 000049 2345 -----T--RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS----VS----SAVKIRVYSVLKDLVYHD 2403 (2629)
Q Consensus 2345 -----~--~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~----~~----~~~~~~i~~~L~~~l~~~ 2403 (2629)
| .+..++.-++.+++.+..++-.+.++.+.+++.+.... .. ..|...++.-++..+.|.
T Consensus 838 ~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 838 AFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDS 911 (1023)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2 34556777778888888999999999999998765431 11 244455555555556665
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-11 Score=168.05 Aligned_cols=471 Identities=12% Similarity=0.062 Sum_probs=302.9
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
.+|.++..|.++++.+|..++.+|+.++...+... ....+.+++.++..|.+. ++.+|..|+.+|..++..- +.
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~---~~- 90 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR---EG- 90 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH---HH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---hh-
Confidence 45666666666666666677777777766443221 111246788888888764 8999999999999887531 10
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
+ ..+. -...+|.|.+.+.+.+..++..++.++.+++... + .....+
T Consensus 91 -----------------~---~~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~-~~~~~v 136 (644)
T 2z6h_A 91 -----------------L---LAIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-E-GAKMAV 136 (644)
T ss_dssp -----------------H---HHHH------------TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-T-THHHHH
T ss_pred -----------------H---HHHH------------HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-c-hhHHHH
Confidence 0 0000 0135677777787788899999999999998752 1 111122
Q ss_pred -HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh
Q 000049 1617 -IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2629)
Q Consensus 1617 -l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~ 1691 (2629)
-...+|.+..++.++++.++..++.+|..++...++. .-...++.|+..+.+......+..++..+..++..-..
T Consensus 137 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~ 216 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216 (644)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTH
T ss_pred HHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCccc
Confidence 2568999999999999999999999999988632211 11356788888887765544555566666655432111
Q ss_pred -hHH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000049 1692 -VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2629)
Q Consensus 1692 -~~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~ 1768 (2629)
..+ ...+|.+++.+.+.+..+++.++.++..++..... + .....++|.+++.+.++++.+|..+..++..+...-
T Consensus 217 ~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-Q-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT-C-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh-h-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 111 35688899989888999999999999999876433 1 234578999999999999999999999988776431
Q ss_pred hh--ch-h-hhHHHHHhhccCC--CchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhH
Q 000049 1769 AT--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2629)
Q Consensus 1769 ~~--~~-i-~~llp~l~~~l~d--~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~ 1842 (2629)
.. .. . ...+|.+.+.+.+ +.+.++..++.+++.+... ..++ +.....+.+ .
T Consensus 295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~--------------~~~~---~~~q~~v~~-~----- 351 (644)
T 2z6h_A 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQEA---EMAQNAVRL-H----- 351 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STTH---HHHHHHHHH-T-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC--------------CchH---HHHHHHHHH-c-----
Confidence 11 10 1 1145555555543 2378999999998887411 0010 001011111 1
Q ss_pred HHHHHHHHhhccCc-cHHHHHHHHHHHHHHHhcChhhHhhhH-HHHHHHHHHHhcCC----------------------C
Q 000049 1843 NEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS----------------------S 1898 (2629)
Q Consensus 1843 ~~vl~~L~~~~~D~-~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~~L~~~L~~~----------------------~ 1898 (2629)
..++.+...+.+. +..+|..|+.+++.++.+.... ..+. ..+++.++..+.+. +
T Consensus 352 -~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~ 429 (644)
T 2z6h_A 352 -YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429 (644)
T ss_dssp -THHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCH
T ss_pred -cChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccH
Confidence 1344454455544 4689999999999988653321 2211 12444455544432 2
Q ss_pred HHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHH
Q 000049 1899 SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTA 1973 (2629)
Q Consensus 1899 ~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~ 1973 (2629)
.+++..+..+|..++...... .....+|.+...+.+.+++++..++.+|+.+... ......+ ...++.+...
T Consensus 430 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 430 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---HHHHHHHHHcCChhHHHHH
Confidence 455666777777665322111 1235678888888999999999999999887532 1122222 2457788889
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhC
Q 000049 1974 LCDSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
+.++++++|..|+.+++.+....+
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999998876543
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=162.33 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=164.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhccCchhHHH
Q 000049 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2629)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~l~-~~~~~~~R~~Al~al~~La~~~~~~~~~~v~ 1419 (2629)
+++.+ ++.+|..|++|+.+|..++.+.+. ..-....+++.+.+.+. +. +..+|.+|+.+++.++..++..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444 466899999999999999987432 11112368888888885 65 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhC-ch-hhhhhc
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~-~l~~~L 1497 (2629)
.++|.++..++|+++.||+++..++..++...+ +..++|.+...+.+++|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999988764 5789999999999999999999999999977654 55 357789
Q ss_pred cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHH
Q 000049 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2629)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2629)
+.++|.+..+++|++++||.+|..+++.++..+++..+..++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999999999999999999998864454433
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-11 Score=167.23 Aligned_cols=460 Identities=11% Similarity=0.074 Sum_probs=304.9
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC-cc
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-IS 1372 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-----~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~ 1372 (2629)
...++.+++.++++++.+|..++.++..+....... ....++.++..|..++++..|..|+.+|..+..... ..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 346788888899999999999999998876432211 235788888888777678999999999999875422 12
Q ss_pred hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000049 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1373 ~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2629)
.+...+.++.|.+.+.+. ++..|..|+.++..++...+.. ...+ ...+|.++..+.++++.+|..+..++..+...
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTH-HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcch-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 222346788888999876 7899999999999998764432 2222 36899999999999999999998888877542
Q ss_pred hcHH--h-H-HhhHHHHHhhhccCC-hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000049 1451 LSAQ--G-V-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1451 l~~~--~-v-~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2629)
-... . . ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-.+.+|.+..++.+.++.++..++++|..
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 1111 1 1 245777777777654 344556777888887532211111114688999999999999999999999999
Q ss_pred HhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1526 l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
++....... ....++|.+.+.+.+.++++|..++.++++++.
T Consensus 254 l~~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 254 LSDAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHTTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhcCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 986432110 012356666677777778888889888888865
Q ss_pred hcCCCCcccch-HhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC-----C--chhhHHHHHHHhccCCChHHH
Q 000049 1606 LVTEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-----N--FPDLVSWLLDALKSDNSNVER 1675 (2629)
Q Consensus 1606 ~~~~~~~l~~~-l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~g~~-----~--~~~ll~~Ll~~L~~~~~~~~R 1675 (2629)
. .++..... -...++.+...+.+ .++.+|..|..+|+.++...++. . -...+|.|.+.+.++.....|
T Consensus 296 ~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~ 373 (529)
T 1jdh_A 296 N--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373 (529)
T ss_dssp T--CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred C--CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHH
Confidence 2 11010001 12356777777764 34899999999999997643321 0 124578888888876655678
Q ss_pred HHHHHHHHHHHHhhChh-HH--HhHhHHHHHhhcCCChhhHHHHH----------------------HHHHHhhhhhccc
Q 000049 1676 SGAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYL----------------------TLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~~~~vR~~a~----------------------~~l~~L~~~~g~~ 1730 (2629)
..++..++.++..-... .+ ..++|.+++.+.+.++.+|..+. .++..++... .
T Consensus 374 ~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~ 451 (529)
T 1jdh_A 374 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--H 451 (529)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--H
T ss_pred HHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--h
Confidence 88888888887532211 11 35678888777766666665444 3444443321 1
Q ss_pred hHhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchh--hhHHHHHhhccCCCchHHHHHHHHHHHHH
Q 000049 1731 FQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2629)
Q Consensus 1731 f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i--~~llp~l~~~l~d~~~~vR~sa~~ll~~l 1802 (2629)
....+ ...++.+...+.+.+++++..+..++..+...-. ...+ ...++.+.+.+.+.+..+|..+...+..+
T Consensus 452 ~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 11111 2367899999999999999999888877652100 0011 12456777777888888888877766543
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-11 Score=168.97 Aligned_cols=480 Identities=14% Similarity=0.083 Sum_probs=301.9
Q ss_pred cHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1452 ~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
.++.+....+.+++.+.+++...|+-+-..+..++...|+.. .-++..+.+-++|+++.||..|.++|+.++
T Consensus 64 ~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---- 135 (618)
T 1w63_A 64 LGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMG---- 135 (618)
T ss_dssp TTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----
T ss_pred cCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----
Confidence 344455667777788888888888877777777665544422 235667777889999999999999999887
Q ss_pred chh-HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000049 1532 NPE-IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2629)
Q Consensus 1532 ~~~-i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~ 1609 (2629)
.++ .+.++|.+.+.+.|++..+| .|+.++... .. ..+.....+++.+...+.|+++.++..|..++..++.. +
T Consensus 136 ~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l--~~-~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--~ 210 (618)
T 1w63_A 136 SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV--IR-KVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--S 210 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--HH-HCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--H
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HH-HChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--C
Confidence 344 37788889999999999988 455555431 00 12233446677788888999999999999999988753 2
Q ss_pred CCcccchHhhhHHHHHHHhc---------------CCCHHHHHHHHHHHHHHHhhhCC--CCchhhHHHHHHHhccCC--
Q 000049 1610 PKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDN-- 1670 (2629)
Q Consensus 1610 ~~~l~~~l~~ll~~L~~~L~---------------d~~~~VR~~A~~aL~~l~~~~g~--~~~~~ll~~Ll~~L~~~~-- 1670 (2629)
++ ...++..++|.+...|. .+++-.+....++++.+...-.+ +.+.++++.+........
T Consensus 211 ~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 211 PD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence 11 12233445555554443 24788888899999888753211 122333433332211111
Q ss_pred ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC
Q 000049 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1671 ~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2629)
+..+...++.++..+.. ........++.+...+.+.++.+|..++..++.++...+..|.+|. +.++.++.|++
T Consensus 290 ~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l~d~d 363 (618)
T 1w63_A 290 GNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCLKDLD 363 (618)
T ss_dssp HHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGGGSSC
T ss_pred HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHccCCC
Confidence 12344445554443211 1112234556667778888999999999999999987766555554 55667788999
Q ss_pred hhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHH
Q 000049 1751 ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~ 1830 (2629)
.+||..+++.+..++. ...++.+++++...+.+.+..+|..++..++.+....++ ....+.
T Consensus 364 ~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~----------------~~~~~v 424 (618)
T 1w63_A 364 VSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP----------------SKRWHI 424 (618)
T ss_dssp HHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC----------------CHHHHH
T ss_pred hhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc----------------cHHHHH
Confidence 9999999888776643 334566778888887778888999999999988643210 011111
Q ss_pred HHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910 (2629)
Q Consensus 1831 ~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~ 1910 (2629)
..+.+ .+.+....++..++..+..++...|......++.+...+.... ..... ...+++++|
T Consensus 425 ~~ll~----------------lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~-~~~~~-~~~~~wilG 486 (618)
T 1w63_A 425 DTIMR----------------VLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY-SQQPL-VQVAAWCIG 486 (618)
T ss_dssp HHHHH----------------HHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC-SCSHH-HHHHHHHHH
T ss_pred HHHHH----------------HHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc-ccHHH-HHHHHHHHh
Confidence 12221 2222223455556666777777666543445555544443211 12333 446899999
Q ss_pred HHHHHhccc---------hh-hhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCc
Q 000049 1911 ELVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2629)
Q Consensus 1911 ~lv~~~~~~---------~l-~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2629)
+....+... +. ..+.+.+...+. ..++.+|..+..++..+....+. ..+.+...+.....|.|
T Consensus 487 Ey~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-----~~~~l~~~L~~~~~~~d 561 (618)
T 1w63_A 487 EYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-----TVNRIKKVVSIYGSSID 561 (618)
T ss_dssp HHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-----CHHHHHHHHHHHTTCSC
T ss_pred hhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHhcCCCC
Confidence 998765321 11 123444444443 56889999999999887654432 12334444555677889
Q ss_pred HHHHHHHHHHHHHHH
Q 000049 1979 LEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1979 ~~VR~~A~~al~~l~ 1993 (2629)
.+||+.|...+..+.
T Consensus 562 ~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 562 VELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999988666543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-11 Score=164.85 Aligned_cols=465 Identities=12% Similarity=0.069 Sum_probs=285.4
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
+|.+++.|.++++.+|..++..|+.++...+... ....++.++.+...+.+ +++.+|..|+.+|..++.. ++.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~-- 93 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG-- 93 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chh--
Confidence 3444444444444444444555555543222110 00123567888888864 4899999999999998653 111
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-
Q 000049 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2629)
+.. +. -...+|.+.+.+.+.++.++..++.++.+++..... .....
T Consensus 94 ----------------~~~---i~------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~ 140 (529)
T 1jdh_A 94 ----------------LLA---IF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVR 140 (529)
T ss_dssp ----------------HHH---HH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred ----------------HHH---HH------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 000 00 013566777777777888999999999999874211 11111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh-
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT- 1691 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~- 1691 (2629)
-...+|.+..++.++++.+|..+..++..++....+. .-.+.++.++..+.+......+..++..+..+...-..
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 220 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccH
Confidence 2468899999999999999999999999887521110 11245777888787765554444455555555432111
Q ss_pred hHH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000049 1692 VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1692 ~~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~ 1769 (2629)
..+ ...+|.+++.+.+.++.++..++.++..++...+.. .....++|.+.+.+.++++++|..+..++..+...-.
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 111 357888999998889999999999999998764431 2345789999999999999999999999888754211
Q ss_pred h--ch-h-hhHHHHHhhccCC--CchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHH
Q 000049 1770 T--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2629)
Q Consensus 1770 ~--~~-i-~~llp~l~~~l~d--~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~ 1843 (2629)
. .. . ...+|.+.+.+.+ +++.++..++..++.+... +.+ .+.....+.+. |
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--------------~~~---~~~~~~~i~~~-~----- 355 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQE---AEMAQNAVRLH-Y----- 355 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STT---HHHHHHHHHHT-T-----
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--------------Cch---HHHHHHHHHHc-C-----
Confidence 0 00 0 1144555555533 4578999999999887411 011 11111122211 1
Q ss_pred HHHHHHHhhccCcc-HHHHHHHHHHHHHHHhcChhhHhhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHH-----------
Q 000049 1844 EVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGRALG----------- 1910 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~~L~~~L~~~~~~~R~~A~~~L~----------- 1910 (2629)
.++.+...+.+.. ..+|..++.+++.++.+... ...+. ..+++.++..+.+.++++|..|.++++
T Consensus 356 -~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~ 433 (529)
T 1jdh_A 356 -GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433 (529)
T ss_dssp -CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH
T ss_pred -ChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH
Confidence 2344444455544 68999999999999864332 22222 245667777777666666665554443
Q ss_pred -----------HHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHHh
Q 000049 1911 -----------ELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTAL 1974 (2629)
Q Consensus 1911 -----------~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L 1974 (2629)
.++...... .....+|.+...+.+++++++..++.+++.+... +. ....+ ...++.+...+
T Consensus 434 ~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~-~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HH-HHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HH-HHHHHHHcCChHHHHHHh
Confidence 332211000 1234567888888999999999999999886421 11 11112 35678888999
Q ss_pred cCCcHHHHHHHHHHHHHH
Q 000049 1975 CDSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1975 ~d~d~~VR~~A~~al~~l 1992 (2629)
.+++++|+..|..++..+
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999888764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-10 Score=158.29 Aligned_cols=476 Identities=14% Similarity=0.107 Sum_probs=310.1
Q ss_pred ccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 000049 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2629)
Q Consensus 1332 ~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~ 1411 (2629)
+.+........++.+. ++++..|+.+...+..++..- ++... -+++.+.+-+++. |+..|..|+.+++.+..
T Consensus 65 G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~-~e~~~--l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDER-QDVHL--LMTNCIKNDLNHS-TQFVQGLALCTLGCMGS--- 136 (618)
T ss_dssp TCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCC-HHHHH--HHHHHHHHHHSCS-SSHHHHHHHHHHHHHCC---
T ss_pred CCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCC-cHHHH--HHHHHHHHhcCCC-CHhHHHHHHHHHHhcCC---
Confidence 4444444445555554 567888888888777776532 22111 4667788888876 78899888888877752
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCch
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
......++|.+..++.|+++.||++|..++..+.... ++.++.+++.+.+.+.+.+..++.+|+.+|+.++...|+
T Consensus 137 ---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 ---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 2345678899999999999999999999999998743 455667888888888899999999999999999876554
Q ss_pred hhhhhccchHHHHhhhhcC---------------CCHHHHHHHHHHHHHHhhhcCchhH-HhHHHHHHhcc---C---CC
Q 000049 1492 QLSQCLPKIVPKLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGL---T---DP 1549 (2629)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l---~---d~ 1549 (2629)
. ...+..++|.++..|.+ +++..+....++|+.++.. +|.. +.+.+.|...+ . +.
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccch
Confidence 2 22344566666665543 4789999999999988753 3432 33333333332 1 11
Q ss_pred ChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHh
Q 000049 1550 NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2629)
Q Consensus 1550 ~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2629)
+..+. +|+.++.... . ........++.+.+.+.+.++++|..+..+++.++.. .+..+.+ ..+.+..++
T Consensus 290 ~~aV~~ea~~~i~~l~--~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~~----~~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDIK--S--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQR----HRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHSC--C--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHGG----GHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHHH----HHHHHHHHc
Confidence 22233 5666655311 1 1222334677777888888889999999999999874 2223333 345667788
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCC
Q 000049 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ 1708 (2629)
Q Consensus 1629 ~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~ 1708 (2629)
.|++..+|..|+.++..++. +..+..+++.++..+.+.+ ...|..++.+++.++..+... ...+++.+++.+.+.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCE-PEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTA 434 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHT
T ss_pred cCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhc
Confidence 89999999999999988865 3456788888888887654 557889999999998876543 455667777777666
Q ss_pred ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCC--CChhHHHHHHHHHHHHHHHhhhc----------hhhhH
Q 000049 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2629)
Q Consensus 1709 ~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d--~~~~VR~~al~al~~iv~~~~~~----------~i~~l 1776 (2629)
...++..+...+..+....++. .. .+++.+...+.+ ..+.+...++..++......... ....+
T Consensus 435 ~~~v~~~~~~~l~~ii~~~p~l-~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~ 510 (618)
T 1w63_A 435 GSYVRDDAVPNLIQLITNSVEM-HA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEV 510 (618)
T ss_dssp GGGSCSSHHHHHHHHHHHSCST-HH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHH
T ss_pred cchhHHHHHHHHHHHHhcChhH-HH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHH
Confidence 6667766677777776654432 22 234444444432 23344445666666665443210 01123
Q ss_pred HHHHhhccC--CCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhcc
Q 000049 1777 LPAVEDGIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2629)
Q Consensus 1777 lp~l~~~l~--d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2629)
.+.+...+. .++..+|..++.++..+....+ +. . ..+. .+ +-.+..
T Consensus 511 ~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~--------------~~--~----~~l~---------~~---L~~~~~ 558 (618)
T 1w63_A 511 LDILESVLISNMSTSVTRGYALTAIMKLSTRFT--------------CT--V----NRIK---------KV---VSIYGS 558 (618)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS--------------SC--H----HHHH---------HH---HHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc--------------ch--H----HHHH---------HH---HHHhcC
Confidence 333333221 4677789888888877753321 00 0 1111 11 222357
Q ss_pred CccHHHHHHHHHHHHHHHh
Q 000049 1855 DVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~ 1873 (2629)
|.+.+||+.|...|.-+..
T Consensus 559 ~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 559 SIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 8889999999999987654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-11 Score=157.79 Aligned_cols=393 Identities=15% Similarity=0.157 Sum_probs=269.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
++-++..+...++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.+++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56667788888899999999999888653221 122 3479999999975 45788999999999999877665433
Q ss_pred hc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH------HhHHHHHHhccCCCChhHHHHHHHHHhcccccc
Q 000049 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2629)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2629)
-. .+.+|.|+.+|.++++.||+.|+++|++++..- ++. ...++.|+..+.+++..
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~---------------- 200 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLS---------------- 200 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGG----------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccch----------------
Confidence 22 367999999999999999999999999998532 221 22344455544433211
Q ss_pred CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
.......+.++.++.+++..- .+..-......++|.|..++.+++++++..|+.+|+.++.
T Consensus 201 ------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 201 ------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp ------------------GSCHHHHHHHHHHHHHHHCCC-SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred ------------------hhhHHHHHHHHHHHHHHhhcc-cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 012345667778888888642 2222223456789999999999999999999999999886
Q ss_pred hhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHHHHHH
Q 000049 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2629)
Q Consensus 1649 ~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a~~~l 1720 (2629)
.-.+. .-..++|.|.+.+.+.. ..++..++.+++.++...... . . ...++.+...+.++++.+|..++.++
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 32211 12457788888887654 557778888888876533221 1 1 34567777788889999999999999
Q ss_pred HHhhhhhccchHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh-----hHHHHHhhccCCCchHHHHH
Q 000049 1721 KYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQS 1794 (2629)
Q Consensus 1721 ~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~-----~llp~l~~~l~d~~~~vR~s 1794 (2629)
..++........... ..++|.+...+.+.+..+|..|..++..+......+.+. -.+|.|.+.+...+.+++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999864433222222 248899999999999999999999998877643333222 25778888888899999999
Q ss_pred HHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1795 a~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
+++.+..++...... . ..+.. ..+.+..| .+..+.....+.+..|++.|..++..++.
T Consensus 421 ~L~aL~nil~~~~~~---------~-----~~~~~-~~~iee~g------gl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKL---------G-----ETEKL-SIMIEECG------GLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTT---------T-----CHHHH-HHHHHHTT------HHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhc---------c-----chHHH-HHHHHHcC------cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999998887542110 0 01111 12222222 12233333466788899999999887764
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-10 Score=154.14 Aligned_cols=395 Identities=15% Similarity=0.161 Sum_probs=271.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
..++.++..+..+++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.. ++...+..|+.+|..++.+.+.+.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3466777788888889998888888877643221 112 4579999999965 557899999999999998776653
Q ss_pred hhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH------HhHHHHHHhccCCCChhHHHHHHHHHhcccc
Q 000049 1494 SQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2629)
Q Consensus 1494 ~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2629)
... -.+.+|.|+.++.++++.||+.|+++|+.++.. +++. ...++.|+..+.+++..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--~~~~r~~i~~~g~i~~Ll~lL~~~~~~-------------- 219 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--GSAFRDLVIKHGAIDPLLALLAVPDLS-------------- 219 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHTTCSSCGG--------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHcCCcHHHHHHHhccchh--------------
Confidence 322 246899999999999999999999999999853 2222 23445555555433211
Q ss_pred ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000049 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l 1646 (2629)
.......+.++.++.+++..- .+..-......++|.|..++.+++++++..|+.+|+.+
T Consensus 220 --------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 220 --------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp --------------------GSCHHHHHHHHHHHHHHHCCC-TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred --------------------HhHHHHHHHHHHHHHHHHhcc-cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 012345667778888887642 22222234567899999999999999999999999998
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHHHH
Q 000049 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLT 1718 (2629)
Q Consensus 1647 ~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a~~ 1718 (2629)
+....+. ....++|.|+..+.+.. ..++..++.+++.++...... . . ...++.+...+.++++.+|..++.
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 8643221 12457888888887654 557778888888876432221 1 1 456788888999999999999999
Q ss_pred HHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-----HHHHHhhccCCCchHHH
Q 000049 1719 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-----LLPAVEDGIFNDNWRIR 1792 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~-----llp~l~~~l~d~~~~vR 1792 (2629)
+++.++..-.......+. .++|.+...+.+.+..+|..|..++..+......+.+.. .+|.|.+.+...+.+++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~ 437 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 437 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence 999998643332222222 488999999999999999999999988776443332221 57788888888999999
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHH
Q 000049 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2629)
Q Consensus 1793 ~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2629)
..+++.+..++...... . ..+.... +++..|. +..+.....+.+..|++.|..++..++
T Consensus 438 ~~~L~aL~nil~~~~~~---------~-----~~~~~~~-~iee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKL---------G-----ETEKLSI-MIEECGG------LDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHTT---------T-----CHHHHHH-HHHHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhc---------c-----ChHHHHH-HHHHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999998887532100 0 0111112 2222221 222333346678889999999988776
Q ss_pred h
Q 000049 1873 A 1873 (2629)
Q Consensus 1873 ~ 1873 (2629)
.
T Consensus 497 ~ 497 (529)
T 3tpo_A 497 S 497 (529)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-10 Score=153.93 Aligned_cols=479 Identities=13% Similarity=0.105 Sum_probs=300.2
Q ss_pred HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
++.+....+.+++.+.+++...|+.+-..+..++...|+.+ --++..+.+-++|+++.+|..|..+|+.+. .
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----~ 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVG----S 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----C
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccC----C
Confidence 34455677888888889999999988888888777666543 234566777889999999999999999985 3
Q ss_pred hhH-HhHHHHHHhcc--CCCChhHH-HHHHHHHhccccccCChhhhh--hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1533 PEI-ASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1533 ~~i-~~lvp~Ll~~l--~d~~~~~r-~al~~L~~~~~~~~~~~~~l~--~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
|++ +.++|.+.+.+ .|++.++| .|+-++... .. .++.... .+++.+.+.+.|+++.++..|..++..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl--~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRL--YR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH--HH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--HH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 544 78889999999 89999998 444444321 11 1122222 6788899999999999999999999998874
Q ss_pred cCCCCcccchHhhhHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCC
Q 000049 1607 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2629)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~-------------~~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~ 1670 (2629)
+++.+.++.+.++..+.+++.++ +|-.+....+.++.+...-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 33445667777777777776432 4667777777776654321111 12234444443332111
Q ss_pred ---C-------hHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1671 ---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1671 ---~-------~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
. ..+...++.++-.+. -..+.....+..+...+.+.++.+|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0 012222222222211 11233455666777777888999999999999999876542 134455566
Q ss_pred HHHhhcC-CCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000049 1741 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2629)
Q Consensus 1741 ~ll~~L~-d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ 1819 (2629)
.++.++. |++..||..+++.+..++ ....++.++.++.+.+.+.+...|..++..++.+....+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 6777788 899999998888766654 34456778888888877777788888888888876443210
Q ss_pred CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC-
Q 000049 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1898 (2629)
Q Consensus 1820 ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~- 1898 (2629)
.+.+...+.+.+. +....+...+...+..++.+.|.. +. ..+..+...+.++.
T Consensus 439 ------~~~~v~~Ll~ll~----------------~~~~~v~~ev~~~l~~ii~~~~~~-~~---~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLIR----------------IAGDYVSEEVWYRVIQIVINRDDV-QG---YAAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHHH----------------HHGGGSCSHHHHHHHHHHGGGCSC-HH---HHHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHHH----------------hhcccchHHHHHHHHHHHhCChhH-HH---HHHHHHHHHHcCccc
Confidence 0111122222111 111113333444445555444432 22 12334455566543
Q ss_pred -HHHHHHHHHHHHHHHHHhccc--hhh-hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHh
Q 000049 1899 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2629)
Q Consensus 1899 -~~~R~~A~~~L~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2629)
...-..+++++|+........ ..| .++..+...+.+.++.+|..+..++..+....+ + . .+.+...+..+.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHHHh
Confidence 334456678999887665432 222 455666666677889999999988888755432 1 1 123333444455
Q ss_pred c--CCcHHHHHHHHHHHHHH
Q 000049 1975 C--DSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1975 ~--d~d~~VR~~A~~al~~l 1992 (2629)
. |.|++||+.|...+.-+
T Consensus 568 ~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 5 89999999997655443
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-12 Score=151.63 Aligned_cols=199 Identities=19% Similarity=0.283 Sum_probs=162.5
Q ss_pred HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCc---
Q 000049 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN--- 1532 (2629)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2629)
..+-|.+.+.+.+++|+.|++++..|..++..+|......+.++++.+...+. |++..||..|+.+++.++..++.
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445678888999999999999999999988766555567889999999995 99999999999999999988775
Q ss_pred hhHHhHHHHHHhccCCCChhHHHH-HHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000049 1533 PEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2629)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~~r~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~ 1611 (2629)
+++..++|.+++.+.|++..+|++ ..++.. +... ..+..++|.+...+.+++|.+|..+..+++.+....+...
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~--~~~~---~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDA--IYAS---TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHH--HHTT---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHc---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 677899999999999999988843 233221 1111 1356789999999999999999999999999776532212
Q ss_pred cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHH
Q 000049 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2629)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~ 1660 (2629)
.+.+|++.++|.+...+.|+.++||..|..+++.++..+|++.+..+++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999764444443
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-10 Score=155.09 Aligned_cols=347 Identities=14% Similarity=0.128 Sum_probs=238.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhH
Q 000049 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2629)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~ 1417 (2629)
.+++.+ ++++...+..|...+..+...- +.+.+...+++|.|.+++.+..++..+..|..+|..++.+-...-...
T Consensus 61 ~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 61 DIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 333443 3344566666666666655321 223333457889999999766578889899999999986543222222
Q ss_pred HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCCh-----hhhHHHHHHHHHHHh
Q 000049 1418 VI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1418 v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la~ 1487 (2629)
+. ..+|.++..+.++++.||+.|..++..++..-+.. .+ ...++.++..+...+. ...+.++.++..++.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 22 47999999999999999999999999987643322 11 3467888888876543 345667788888876
Q ss_pred hC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcccc
Q 000049 1488 CA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2629)
Q Consensus 1488 ~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2629)
.. +.........++|.|..++.+.+++|+..|+++|..++..-. +.. +.+
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~---------------------~~i------ 270 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMV------ 270 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHH---------------------HHH------
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhH---------------------HHH------
Confidence 43 222223346788999999999999999999999999975321 100 000
Q ss_pred ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc-chHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
.-..++|.|...+.+.+..++..++.++++++.. +..... -.-...++.+..++.++++.+|..|+.+|+.
T Consensus 271 ------~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 271 ------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342 (510)
T ss_dssp ------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred ------HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0113466677777778888999999999998753 211100 0112456667778889999999999999999
Q ss_pred HHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHH
Q 000049 1646 LIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGY 1716 (2629)
Q Consensus 1646 l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a 1716 (2629)
++....+. .-..++|.|+..+.+.+ ..+|..++.+++.++.....+.. ...++.+.+.+.++++.++..+
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~ 421 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 421 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 97632221 11357888888887654 56888999999998876544432 3568899999999999999999
Q ss_pred HHHHHHhhhh
Q 000049 1717 LTLFKYLPRS 1726 (2629)
Q Consensus 1717 ~~~l~~L~~~ 1726 (2629)
+.++..+...
T Consensus 422 L~aL~nil~~ 431 (510)
T 3ul1_B 422 LDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-09 Score=145.73 Aligned_cols=514 Identities=13% Similarity=0.072 Sum_probs=306.1
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC
Q 000049 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~ 1977 (2629)
+...|..+..-+-.+ ...|.++. ...+.+.+.+.+++...|..+..++..+.... .+.+--+++.+.+-+.|+
T Consensus 51 ~~~~k~~~l~Kli~l-~~~G~d~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-----~e~~~L~iN~l~kDl~~~ 123 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFI-FLLGHDID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-----SELIRLINNAIKNDLASR 123 (621)
T ss_dssp CHHHHHHHHHHHHHH-HHHSCCCC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-----HHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHH-HHcCCCCc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-----cHHHHHHHHHHHHhcCCC
Confidence 344444443333222 22455543 33444555778888888888877776543221 123344567778888888
Q ss_pred cHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHH
Q 000049 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057 (2629)
Q Consensus 1978 d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL 2057 (2629)
++.+|..|..+++.+.. +
T Consensus 124 n~~ir~lALr~L~~i~~---~----------------------------------------------------------- 141 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGS---R----------------------------------------------------------- 141 (621)
T ss_dssp CHHHHHHHHHHHHHHCC---H-----------------------------------------------------------
T ss_pred CHHHHHHHHHHhhccCC---H-----------------------------------------------------------
Confidence 88888888777766521 1
Q ss_pred HHHHHHhCCChhhhHhhhHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhcccccHH--HHHHHHHhhcCCCChhHHHHHH
Q 000049 2058 GALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLKGVGDNQASIRRSSA 2133 (2629)
Q Consensus 2058 ~~La~~~g~~l~~~l~~il~~Ll~~L--~~~~~~vr~~a~~al~~l~~~~~~~~~~--~ll~~Ll~~l~d~~~~vR~~a~ 2133 (2629)
...+.++|.+.+.+ .+.++.||..|.-|+..+.... ++.+. .+++.+.+.+.|.|+.++.+|+
T Consensus 142 ------------e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~ 208 (621)
T 2vgl_A 142 ------------EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAAT 208 (621)
T ss_dssp ------------HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHH
Confidence 12334556667777 7889999999999998888743 33333 6777788888899999999999
Q ss_pred HHHHHHHHhchhhhhhhHHHHHHHHHHHhcCC-------------ChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHH
Q 000049 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS-------------DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200 (2629)
Q Consensus 2134 ~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~-------------d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l 2200 (2629)
.++..++...+..+.++++.+++.|..++.+. ++-.+-.....+..+......+....+.+.+.+.+
T Consensus 209 ~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il 288 (621)
T 2vgl_A 209 SLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETIL 288 (621)
T ss_dssp HHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999998877777777777777776665432 23333333333333221100000001111111111
Q ss_pred hhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCC--HHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHH
Q 000049 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS--AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2629)
Q Consensus 2201 ~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~--~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~ 2278 (2629)
....+ .|+.- .+.+.+ ..+-..++.++-.+ .+ ..++......+|.+
T Consensus 289 ~~~~~-----------------~~ks~---------~l~~~n~~~aVl~ea~~~i~~l---~~---~~~~~~~~~~~L~~ 336 (621)
T 2vgl_A 289 NKAQE-----------------PPKSK---------KVQHSNAKNAVLFEAISLIIHH---DS---EPNLLVRACNQLGQ 336 (621)
T ss_dssp HHHHS-----------------CCSCS---------SHHHHHHHHHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHH
T ss_pred Hhhcc-----------------Ccccc---------cccccchHHHHHHHHHHHHHhc---CC---cHHHHHHHHHHHHH
Confidence 11000 00000 000111 13333444444333 22 22344556677777
Q ss_pred HhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHh
Q 000049 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357 (2629)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~-d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~ 2357 (2629)
.+... +.++|..++.+|..++...+. .+++......|+.++. |++..+|..+...|..++. ..+++.++.+|...
T Consensus 337 ~L~~~-~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~y 412 (621)
T 2vgl_A 337 FLQHR-ETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSY 412 (621)
T ss_dssp HSSCS-CHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HhcCC-CcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHH
Confidence 77654 789999999999999765431 1234455678888999 9999999999999888854 34688999999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000049 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2629)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2629)
+...|.+.|..++.+++.+..+..... .-+.+.++.++... .+.+...+...+..+....|+-. ...+..+...
T Consensus 413 l~~~d~~~~~~~v~~I~~la~k~~~~~-~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii~~~~~~~-~~~~~~l~~~ 486 (621)
T 2vgl_A 413 LETADYSIREEIVLKVAILAEKYAVDY-TWYVDTILNLIRIA----GDYVSEEVWYRVIQIVINRDDVQ-GYAAKTVFEA 486 (621)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHH----GGGSCSHHHHHHHHHHGGGCSCH-HHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhh----cccchHHHHHHHHHHHhCChhHH-HHHHHHHHHH
Confidence 998999999999999999988776544 45555555555432 22222333444455555555321 1123333333
Q ss_pred cCCCCchhhHhHHHHHHHHHhhCCccccCChh--HHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhH
Q 000049 2438 ASSPSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2629)
Q Consensus 2438 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~--~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2629)
+.++.. +...+.....++.+.++.+.+.+. ..+++..+.+......+.+|..++.|+.++.... | ...
T Consensus 487 l~~~~~--~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~----p----~~~ 556 (621)
T 2vgl_A 487 LQAPAC--HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF----P----EVK 556 (621)
T ss_dssp HTSSSC--CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC----G----GGH
T ss_pred HcCccc--hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC----h----HHH
Confidence 333332 222222222444444433332211 1356677777777888999999999999986653 2 233
Q ss_pred HHHHHHHhh-cC--CCCHHHHHHHHHHHHHHHh
Q 000049 2516 DILASVVSA-LH--DDSSEVRRRALSALKSVAK 2545 (2629)
Q Consensus 2516 ~~l~~l~~~-l~--~~~~~vr~~al~~l~~~a~ 2545 (2629)
+.+..++.. .. |.+.|+|.-|..-.+-+..
T Consensus 557 ~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 557 ATIQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 444444432 33 8999999999888776643
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-10 Score=152.04 Aligned_cols=348 Identities=14% Similarity=0.125 Sum_probs=241.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
+.+++.+. +++...+..|...+..+...- +...+...++++.|.+++....++..+..|..+|..++.+-......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444443 344566677777776665321 12233345788999999976657888989999999998654321122
Q ss_pred HHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCCh-----hhhHHHHHHHHHHH
Q 000049 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2629)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la 1486 (2629)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. .+ ...+|.++..+...+. ...+.++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 48999999999999999999999999987543222 11 3468888888876543 34566778888887
Q ss_pred hhC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccc
Q 000049 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2629)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2629)
... +.........++|.|..++.+.+++|+..|+++|..++..-. +.. +.+
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---------------------~~v----- 289 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMV----- 289 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---------------------HHH-----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---------------------HHH-----
Confidence 653 222223346788999999999999999999999999885321 100 000
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc-cchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM-IPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l-~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
....++|.|...+.+.+..++..++.++++++.. +.... .-.-...++.|..++.++++.+|..|+.+|+
T Consensus 290 -------~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 290 -------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp -------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred -------HhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0123566777777888889999999999998753 21110 0112346778888999999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHH
Q 000049 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1645 ~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
.++....+. .-..++|.|+..+.+.. ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++..
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~ 439 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHH
Confidence 998632211 11357888888887654 55788899999998876544432 356889999999999999999
Q ss_pred HHHHHHHhhhh
Q 000049 1716 YLTLFKYLPRS 1726 (2629)
Q Consensus 1716 a~~~l~~L~~~ 1726 (2629)
++.++..+...
T Consensus 440 ~L~aL~nil~~ 450 (529)
T 3tpo_A 440 ILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887653
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=145.18 Aligned_cols=198 Identities=10% Similarity=0.201 Sum_probs=162.7
Q ss_pred HHhhhccCChhhhHHHHHHHHH-HHhhCchhh--hhhccchHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcC-c----h
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N----P 1533 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~-la~~~p~~l--~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~-~----~ 1533 (2629)
+.+.+.+++|+.|+.+++.|.. ++.++|+.. ...+.+++..+.+.+ +|+|..||..|+++|+.+++.++ . +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566789999999999999999 987777765 455678899999999 89999999999999999999887 2 5
Q ss_pred hHHhHHHHHHhccCCCChhHHH----HHHHHHhccccccCCh-hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1534 EIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2629)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2629)
+...++|.++..+.|....+++ |++.+... ...... +++..+++.+...+.+.+|.+|..+..+++.++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 7788999999999998887763 44444321 111111 2377899999999999999999999999999998644
Q ss_pred CC-CcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHH
Q 000049 1609 EP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2629)
Q Consensus 1609 ~~-~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~L 1662 (2629)
.. ..+.+|+ +.++|.+.+.+.|++++||..|..+++.++..+|++.+..+++.|
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 32 4577899 999999999999999999999999999999999987666666644
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-05 Score=110.51 Aligned_cols=420 Identities=10% Similarity=0.046 Sum_probs=223.9
Q ss_pred HhhhHHHHHHHHHHHhcCCCH----------------------HHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC--C
Q 000049 1879 LKEIMPVLMNTLISSLASSSS----------------------ERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--D 1934 (2629)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~~~----------------------~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~--d 1934 (2629)
+.+++..+...++..+.-|.+ ..+..-..+|..+..-.+......+++.+.+.+. .
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~ 490 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTE 490 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 567788888888888774421 1122223344444332334456666777765544 3
Q ss_pred CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHhC--hhhhhhhHHH
Q 000049 1935 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-----ILEVRESAGLAFSTLFKSAG--MQAIDEIVPT 2007 (2629)
Q Consensus 1935 ~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-----d~~VR~~A~~al~~l~~~~g--~~~~~~ilp~ 2007 (2629)
.+|..+.+.|+++|.+.....++.-.++++++++.+......+ .+.++...+..+|++.+... ...++.++..
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~ 570 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNK 570 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHH
Confidence 5689999999999998655554445578888888888766443 23455555567777666543 3456666777
Q ss_pred HHHhccCcC--chhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC
Q 000049 2008 LLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085 (2629)
Q Consensus 2008 Ll~~L~~~~--~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~ 2085 (2629)
+++.+.+.. ..+.|-+++..++..+...+... ......||+..|+..+.....+
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~------------------------~~~e~~p~i~~il~~~~~~~~~ 626 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQV------------------------QVGEVMPFIDEILNNINTIICD 626 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSC------------------------CTTCSSCHHHHHHTSHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhc------------------------cccccchHHHHHHHHHHHHHHh
Confidence 776665432 23334444444443222211110 0011245666666666655555
Q ss_pred CCHHHHHHHHHHHHHHHhhccccc-----HHHHHHHHHhhcCC------------CChh-HH--HHHHHHHHHHHHhchh
Q 000049 2086 DDMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGD------------NQAS-IR--RSSAYLIGYFYKNSKL 2145 (2629)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~~~~-----~~~ll~~Ll~~l~d------------~~~~-vR--~~a~~~L~~l~~~~~~ 2145 (2629)
=.+.-.....++++.++...+.+. +..+|+........ .|+. ++ ...+.+....|...+.
T Consensus 627 l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~ 706 (1073)
T 3gjx_A 627 LQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGH 706 (1073)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcch
Confidence 455555666777888877665422 23333222211100 1222 12 1334455566777777
Q ss_pred hhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccc----ccchHHHHHHHHhhhhhhhhhhhcCCcccccCC
Q 000049 2146 YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV----QPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221 (2629)
Q Consensus 2146 ~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~----l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~ 2221 (2629)
.+.+++..+++.++...+ ...+.++..+...+... ....+..++..+-..-.. . +...
T Consensus 707 ~f~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~----~------i~~~ 768 (1073)
T 3gjx_A 707 PFVIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISG----W------VSRS 768 (1073)
T ss_dssp GGHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHH----H------HTTC
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHH----H------HhcC
Confidence 888888888777765442 11112211111111110 001111122111111000 0 0000
Q ss_pred CCcc-cchhhHHHHHHHH----hcCCHHHHH-HHHHHHHHHHhhcChhhhhhchhhhhHHH----HHHhcC--CCCHhHH
Q 000049 2222 CLPK-ALQPLLPIFLQGL----ISGSAELRE-QAALGLGELIEVTSEQSLKEFVIPITGPL----IRIIGD--RFPWQVK 2289 (2629)
Q Consensus 2222 ~l~k-~l~~ilp~ll~~L----~~~~~~~r~-~aa~~L~~l~~~~~~~~l~p~v~~i~~~L----i~~l~~--~~~~~vk 2289 (2629)
..++ -...++|.+++.+ ....++.|. ..+.+.+.+++..| ..+.|.++.|...+ +..+.+ ..-++.|
T Consensus 769 ~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~-~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r 847 (1073)
T 3gjx_A 769 NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLG-GHITAEIPQIFDAVFECTLNMINKDFEEYPEHR 847 (1073)
T ss_dssp SCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHG-GGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred CCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHhCCcccCcHHH
Confidence 0000 0122333333332 223344443 45778888888887 57778777776543 344443 2368899
Q ss_pred HHHHHHHHHHHHhcCCCccCchH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 2290 SAILSTLSIIIRKGGIALKPFLP----QLQTTFIKCLQDSTRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~lp----~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~ 2341 (2629)
..-+..+..+..++...+-..-+ .++..++-++.++++++-..+...+-.+.
T Consensus 848 ~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll 903 (1073)
T 3gjx_A 848 TNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLL 903 (1073)
T ss_dssp HHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 99999999999887664443323 35556667788888888888887777663
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-09 Score=132.95 Aligned_cols=241 Identities=17% Similarity=0.121 Sum_probs=159.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2629)
.++.|.+.+.++ ++.+|..|+.+++.+. + ...++.++..+.|+++.||..+..++..+.. .+..+..
T Consensus 24 ~i~~L~~~L~~~-~~~vr~~A~~~L~~~~---~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDDH-NSLKRISSARVLQLRG---G-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTCS-SHHHHHHHHHHHHHHC---C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHcC-CHHHHHHHHHHHHccC---C-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 355666777765 7888888888777654 1 2567778888889999999988888876632 1223444
Q ss_pred hHHHHHh-hhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1459 VLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1459 ilp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
+++.+.+ .+.++++.+|..++.+|+.+....|.. -+.+++.+...++|+++.||..|+.+|+.++. ..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~ 159 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KA 159 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HH
Confidence 5555553 356778888888888888887544322 24567788888888888999888888887764 13
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
.+|.|...+.|++..+| .++..+.... . .-..++|.+...+.|.++.+|..++.+++.+..
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININK---Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhc---c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence 56777777777777776 4555554310 0 013456677777777777788777777776541
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCC
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 1671 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~ 1671 (2629)
+..++.+...+.|++ ||..++.+++.+.. +..+|.|.+.+.++..
T Consensus 222 -~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 222 -KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp -GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSC
T ss_pred -HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCC
Confidence 135566666666643 77777777776532 3566777666655443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-06 Score=113.92 Aligned_cols=333 Identities=16% Similarity=0.136 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhc
Q 000049 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 1667 (2629)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~---d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~ 1667 (2629)
..+-.|...+|.+.. ++.++ .+..+.+.+. ..++.+|..|+.++|.+....+. +.+..|...+.
T Consensus 373 ~~k~sA~aSLGlIh~--g~~~~-------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~~~~lL~~~L~ 439 (963)
T 4ady_A 373 WAKFTATASLGVIHK--GNLLE-------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----DTTDYLKNIIV 439 (963)
T ss_dssp HHHHHHHHHHHHHTS--SCTTT-------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcc--CchHH-------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHc
Confidence 345666667776654 33222 3334444443 56789999999999999877664 35555666665
Q ss_pred cCC-------ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1668 SDN-------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1668 ~~~-------~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
++. ...+|.+++.+||.+..+.+.+. +++.+...+.+.+..+|+.+..+++.+-.-.|. ...+..++.
T Consensus 440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee---v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--~~ai~~LL~ 514 (963)
T 4ady_A 440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE---VYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--PEAIHDMFT 514 (963)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH---HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--HHHHHHHHH
T ss_pred CccccccccccHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--HHHHHHHHH
Confidence 543 24588899999998776666542 333344444455667788887777766433333 233444444
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000049 1741 AILDGLADENESVRDAALGAGHVLVEHYA-TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2629)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ 1819 (2629)
.+. .+.++.+|..+.-+++.+. ++ ++.++.++..+. .+.+|-+|.+++-++|--. .|. ++
T Consensus 515 ~~~---e~~~e~vrR~aalgLGll~--~g~~e~~~~li~~L~---~~~dp~vRygaa~alglAy---aGT--------Gn 575 (963)
T 4ady_A 515 YSQ---ETQHGNITRGLAVGLALIN--YGRQELADDLITKML---ASDESLLRYGGAFTIALAY---AGT--------GN 575 (963)
T ss_dssp HHH---HCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHT---TTS--------CC
T ss_pred HHh---ccCcHHHHHHHHHHHHhhh--CCChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHh---cCC--------CC
Confidence 433 3567888888877776552 22 234555555443 3578889998877666421 111 00
Q ss_pred CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCH
Q 000049 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899 (2629)
Q Consensus 1820 ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~ 1899 (2629)
....+. .|..+.+|.+..||+.|+..++.+.-..+.. .+.++.. ...+.++
T Consensus 576 -------~~aIq~---------------LL~~~~~d~~d~VRraAViaLGlI~~g~~e~----v~rlv~~---L~~~~d~ 626 (963)
T 4ady_A 576 -------NSAVKR---------------LLHVAVSDSNDDVRRAAVIALGFVLLRDYTT----VPRIVQL---LSKSHNA 626 (963)
T ss_dssp -------HHHHHH---------------HHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS----HHHHTTT---GGGCSCH
T ss_pred -------HHHHHH---------------HHHHhccCCcHHHHHHHHHHHHhhccCCHHH----HHHHHHH---HHhcCCH
Confidence 001111 1223346778889999999999876555432 3333222 2357889
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcC--C
Q 000049 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--S 1977 (2629)
Q Consensus 1900 ~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d--~ 1977 (2629)
.+|..|..+||.+....+ .+.++..|.....|++..||++++.+||.+..... +...+.+.+++..+.+...| .
T Consensus 627 ~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn-na~~~rva~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT-EKLNPQVADINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC-TTTCTTHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc-cccchHHHHHHHHHHHHHhcccc
Confidence 999999999998764332 25667778888899999999999999998755432 23334556666666677765 5
Q ss_pred cHHHHHHHHHHHHHHH
Q 000049 1978 ILEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1978 d~~VR~~A~~al~~l~ 1993 (2629)
|+.+|..+.-|.|.+.
T Consensus 703 d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 703 EGLAKFGACVAQGIMN 718 (963)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7888988888888775
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-09 Score=131.39 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=186.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
.++.++..+.|+++.||..|..++..+. -...+|.+++.+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 4677888899999999999988888773 2457888999999999999999999998875321 123445
Q ss_pred HHHHh-hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000049 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1501 vp~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
++.+. .+++|+++.||..|+++|+.++.... ......++.|...+.|++..+| .++..+.... . ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------~---~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------D---KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC------C---HHHH
Confidence 56555 35789999999999999999985432 2345778999999999999988 5677765421 1 2367
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
|.|...+.+.++.+|..++..++.+.. . -+..++.+...+.|+++.||..|+.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY--D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC--C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc--C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 888889999999999999999988742 1 1357788889999999999999999999865 2467
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC-CChhhHHHHHHHH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 1720 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~vR~~a~~~l 1720 (2629)
++.|...+.++. +|..++.+++.+. . +..+|.+.+.+.+ .++.++..++..+
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i~----~---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhcC----c---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 788888877643 6777777777653 2 2566777777654 4555555444433
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-09 Score=145.73 Aligned_cols=286 Identities=16% Similarity=0.277 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHhhChhH-H-HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc--chHhhHHhHHHHHHhhcCCC
Q 000049 1674 ERSGAAQGLSEVLAALGTVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2629)
Q Consensus 1674 ~R~~a~~~L~~i~~~~g~~~-l-~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~--~f~p~l~~ii~~ll~~L~d~ 1749 (2629)
.+..++..++.+...-+... . ..++..+.+.+.+.... ++++.++..++...+. .++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45667777777766432221 1 35666777777765444 9999999999987764 78999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCC-chHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHH
Q 000049 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2629)
Q Consensus 1750 ~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~-~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~ 1828 (2629)
...||.+|..+...++..++..++..++|.+..++.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999999655 69999999999999874321
Q ss_pred HHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000049 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2629)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~ 1907 (2629)
..+. ..+.++++.+..+.+|.-.+|..+|..++..++.... ..+.+++|. |++++.+++. .-.
T Consensus 167 --~~~~-----~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~----~~~~~~~p~~-----~~~ 230 (986)
T 2iw3_A 167 --DQVA-----LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS----LIQCIADPTE-----VPE 230 (986)
T ss_dssp --HHHH-----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH----HHHHHHCTTH-----HHH
T ss_pred --HHHH-----HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH----HHHHhcChhh-----hHH
Confidence 1111 1445688888888999999999999999999887433 445566555 5556677754 122
Q ss_pred HHHHHH-----HHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc-hhhHHHhHHHHHHHHHHHhc-CCcHH
Q 000049 1908 ALGELV-----RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALC-DSILE 1980 (2629)
Q Consensus 1908 ~L~~lv-----~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-~~~l~~~l~~ll~~l~~~L~-d~d~~ 1980 (2629)
|+..+. ..+....+.-+.|.|.++|+++...+++.++..+.+++.-+. +....+|++.++|.+.+... -.+|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 222221 222334577899999999999988888888877777766543 45678999999999998765 46999
Q ss_pred HHHHHHHHHHHHHHHhCh
Q 000049 1981 VRESAGLAFSTLFKSAGM 1998 (2629)
Q Consensus 1981 VR~~A~~al~~l~~~~g~ 1998 (2629)
+|+.|.+|+..+.+..+.
T Consensus 311 ~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999876443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-05 Score=109.11 Aligned_cols=261 Identities=19% Similarity=0.174 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccC
Q 000049 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2629)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~ 1669 (2629)
..+|..|+-.+|-+.-..++ +.+++.|...+.+.+..+|..|+.++|.+.-..|. .+.+..|+..+.++
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---~~ai~~LL~~~~e~ 519 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---PEAIHDMFTYSQET 519 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---HHHHHHHHHHHhcc
Confidence 46777888888876432122 34677778888888888899999999988654443 24444555555455
Q ss_pred CChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhc-CCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCC
Q 000049 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2629)
Q Consensus 1670 ~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~-~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2629)
.....|+.++.+|+.+.- |.. +..+.+++.+. +.++.+|.+++.+++.-....|. ...++.++..+ ..|
T Consensus 520 ~~e~vrR~aalgLGll~~--g~~---e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~---~~d 589 (963)
T 4ady_A 520 QHGNITRGLAVGLALINY--GRQ---ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVA---VSD 589 (963)
T ss_dssp SCHHHHHHHHHHHHHHTT--TCG---GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHH---HHC
T ss_pred CcHHHHHHHHHHHHhhhC--CCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHh---ccC
Confidence 556688888888887643 332 22344444433 57899999999888866555555 22333333333 347
Q ss_pred CChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhh-ccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHH
Q 000049 1749 ENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2629)
Q Consensus 1749 ~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~-~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~ 1827 (2629)
.+++||.+|.-+++.+.-. .++ ..|.+.. ...+.++.+|.++...+|.+- .|.
T Consensus 590 ~~d~VRraAViaLGlI~~g-~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~---aGn------------------ 643 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLR-DYT----TVPRIVQLLSKSHNAHVRCGTAFALGIAC---AGK------------------ 643 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSS-SCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHT---SSS------------------
T ss_pred CcHHHHHHHHHHHHhhccC-CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhc---cCC------------------
Confidence 7889999998888765321 112 2333333 445778999999999998762 000
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC--CCHHHHHHH
Q 000049 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS--SSSERRQVA 1905 (2629)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~--~~~~~R~~A 1905 (2629)
...+++..|.....|.+..||+.|+..++.+...+.....+.+..++..+.+...+ .+...|..+
T Consensus 644 -------------~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 644 -------------GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp -------------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred -------------CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 00123333334468999999999999999998766655444555555555555543 344455555
Q ss_pred HHHHH
Q 000049 1906 GRALG 1910 (2629)
Q Consensus 1906 ~~~L~ 1910 (2629)
.-+.|
T Consensus 711 ~iAqG 715 (963)
T 4ady_A 711 CVAQG 715 (963)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-07 Score=134.58 Aligned_cols=533 Identities=13% Similarity=0.103 Sum_probs=293.0
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCC
Q 000049 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~ 1126 (2629)
.++.++|..+++| |+.+|.+|++.|++.... |........+. ...+.+..+|.+|. ..|...+.
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3578889899998 778899999999876421 11111121211 22344566666654 34765543
Q ss_pred CCCCCh-HhHHHhhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000049 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2629)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~-------~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2629)
+.++.+ ..+++.+.+ ....+|++++++++.++. .||+.|++++..+.+.... +...+.+.
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHH
Confidence 333345 667776643 468999999999999865 6888888888888876431 11457888
Q ss_pred HHHHHHhhhhc-CCCChhHHHHHHHhhhcCCCcHHHHHH-HHHHHHHHHHhhCccchhhhHHHHHHHhccc---------
Q 000049 1198 ALALHSAADVL-RTKDLPVIMTFLISRALADTNADVRGR-MLNAGIMIIDKHGRDNVSLLFPIFENYLNKK--------- 1266 (2629)
Q Consensus 1198 ~~~l~~l~~~~-~~~~~~~i~~~li~~~l~d~~~~Vr~~-~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~--------- 1266 (2629)
..+|..+++.+ ..++ ... .|.. ..++. . ++++.+++.+...+...
T Consensus 154 L~iL~~L~Eev~~~~~---------------~~~-~r~~~l~~~l----~----~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQT---------------LPP-QRRRDIQQTL----T----QNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp HHHHHHHHHHHHTSCC---------------SCH-HHHHHHHHHH----H----HTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccccc---------------hHH-HHHHHHHHHH----H----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888887642 2111 111 1111 11111 1 11333444433333210
Q ss_pred -CCC---hhhhhhHHHHHHHHHHHHHhhhccCCC-cc----hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhcc--c-
Q 000049 1267 -ASD---EEKYDLVREGVVIFTGALAKHLAKDDP-KV----HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E- 1334 (2629)
Q Consensus 1267 -~~~---~~~~~~vr~~~v~~~~~La~~l~~~~~-~l----~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~--~- 1334 (2629)
..+ ++....++..+ +..+..++.-.+. .+ ..+++.+...+.+ ++++.++.+||..++..-.. .
T Consensus 210 ~~~~~~~~~~~~~l~~~a---L~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~ 284 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAA---LNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR 284 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHH---HHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH
T ss_pred cccchhhhhhhHHHHHHH---HHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH
Confidence 000 01122233333 3344333321111 00 1366666666654 57899999999988854321 1
Q ss_pred --h-----HHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHhhh-----------CcchhhhhcHHHHHHHHhcC
Q 000049 1335 --A-----PTLVSRLLDQLMK-------SDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLAD 1389 (2629)
Q Consensus 1335 --~-----~~ll~~ll~~L~~-------~~~~~~R~~Aa~~L~~l~~~l-----------g~~~l~~~~i~~~L~~~l~~ 1389 (2629)
. ...+..++..+.. .+++..++.-+..+..+...+ ....+ ..+++.+..+..+
T Consensus 285 ~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~ 362 (1204)
T 3a6p_A 285 KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTH 362 (1204)
T ss_dssp GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTS
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhC
Confidence 0 1122344444321 112334444444433333111 11112 2577777777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHh----ccCchhHHHHHHHHH---HHHcCCCC------------------------HHHHH
Q 000049 1390 RNSAKRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVRE 1438 (2629)
Q Consensus 1390 ~~~~~~R~~Al~al~~La~~~----~~~~~~~v~~ilp~l---l~~l~D~~------------------------~~VR~ 1438 (2629)
. +...-..++.....+.+.. ...+.+++..+++.+ +..+.-+. ...|+
T Consensus 363 ~-~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk 441 (1204)
T 3a6p_A 363 P-SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRA 441 (1204)
T ss_dssp S-CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred c-cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHH
Confidence 5 4444444444334344322 123567788888888 44432111 13466
Q ss_pred HHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc-------------------------CChhhhHHHHHHHHHHHhhCchhh
Q 000049 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLED-------------------------KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1439 aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~-------------------------~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
...+.++.++...+..++..+.+.+.+.+.+ ..|....+....+.++++......
T Consensus 442 ~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~ 521 (1204)
T 3a6p_A 442 QQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTL 521 (1204)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6677777777766666666666666443321 235555555556666665432211
Q ss_pred -hhhcc-chHHHHhhhh---cCCCHHHHHHHHHHHHHHhhhcCc-h-hHHhHHHHHHhccCCCCh-hHHHHHHHHHhccc
Q 000049 1494 -SQCLP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTF 1565 (2629)
Q Consensus 1494 -~~~L~-~ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~-~~r~al~~L~~~~~ 1565 (2629)
..+++ .++|.+++.+ +..+|.+|..++.+++.+...+.. | .+..+++.++..+.++.. ..+
T Consensus 522 e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~----------- 590 (1204)
T 3a6p_A 522 NREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK----------- 590 (1204)
T ss_dssp CTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT-----------
T ss_pred ccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc-----------
Confidence 13333 2455555543 446899999999999998887652 3 345555555555433100 000
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCC---HHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARA 1642 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~---~~VR~~A~~a 1642 (2629)
.. ..+.+.++|..|+.++..++..+. +.+.||++.+...+..++.... ..-+..-..+
T Consensus 591 ----~~-------------~~~~~k~vr~~a~~al~~L~~~~~--~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~ea 651 (1204)
T 3a6p_A 591 ----AP-------------RTRAVRNVRRHACSSIIKMCRDYP--QLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEA 651 (1204)
T ss_dssp ----SC-------------CCHHHHHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHH
T ss_pred ----cc-------------ccHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHH
Confidence 00 000124789999999999998653 4789999999999998887443 5566677788
Q ss_pred HHHHHhhhCCC-----CchhhHHHHHHHhcc
Q 000049 1643 IGSLIRGMGEE-----NFPDLVSWLLDALKS 1668 (2629)
Q Consensus 1643 L~~l~~~~g~~-----~~~~ll~~Ll~~L~~ 1668 (2629)
++.++..+++. ++..+++.+.+.+.+
T Consensus 652 l~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 652 LVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 88886655543 355666666666554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-08 Score=118.06 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=154.0
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
+.++-....+.++..+.|+++.||..|..++..+.. ...+|.+++.+.+++|.+|..++..|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 334455778899999999999999999999887632 3568889999999999999999999988742
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~ 1572 (2629)
+..++.+...++|+++.||..|+++|+.++. + ..++.+.+.+.|++..+| .++..+....
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E---RAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 3567888999999999999999999999864 2 466778888899998888 5666665421
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
-...++.|...+.+.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+-
T Consensus 136 -~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 -DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 13467888899999999999999999998732 347788888889999999999999998754
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-06 Score=111.89 Aligned_cols=477 Identities=12% Similarity=0.084 Sum_probs=284.7
Q ss_pred HhhcCCCCCCChHhHHHhhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH
Q 000049 1121 WDRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2629)
Q Consensus 1121 w~~~~~~~~~~~~~Ll~~l~--~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2629)
.....+.+++ +.-|+.++. .....+|..+.-+++...+.+++.+.+.+...++.......... .-.....+.
T Consensus 160 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~-----~~~~~~~~~ 233 (778)
T 3opb_A 160 LNKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDV-----GNDPLSIIV 233 (778)
T ss_dssp HHHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----SSCHHHHHH
T ss_pred HHHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCC-----CCccHHHHH
Confidence 3445566654 666777554 57889999999999988888888887777777764331111100 012223334
Q ss_pred HHHHHhhhh--------cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchh-hhHHHHHHHhcccCCC
Q 000049 1199 LALHSAADV--------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVS-LLFPIFENYLNKKASD 1269 (2629)
Q Consensus 1199 ~~l~~l~~~--------~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~-~Ll~~~~~~l~~~~~~ 1269 (2629)
.++..+.+. |-.+. +.+.+.......++..+..++++.+... +..+..+ .+...+..|+...-+.
T Consensus 234 ~~l~~lfPi~p~~~s~lfl~e~---~~~~l~~~~~~~~~~~~~~a~L~lLsaA---Ci~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 234 KTLSELYPSLTTLCSEIFLTKG---LSKLFKKRVFEEQDLQFTKELLRLLSSA---CIDETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHTTTTHHHHHHHHSTTT---HHHHHHHHHHSSCCHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCHHHHHHHHcccc---HHHHHHHHHhcccchHHHHHHHHHHHHH---hCCcHHHHHHHHhHHHHHHHHhcc
Confidence 444444332 22222 2222322222345566666665554322 2222222 2223333444331111
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhh--hccc---hHHHHHHHHH
Q 000049 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--MQDE---APTLVSRLLD 1344 (2629)
Q Consensus 1270 ~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~--~~~~---~~~ll~~ll~ 1344 (2629)
+.+|..+...+..+...-...+..+..+.+.+.+.+.++..+.+..+.+.|.-+-.. +++. ....+..|++
T Consensus 308 ----~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ 383 (778)
T 3opb_A 308 ----EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLT 383 (778)
T ss_dssp ----GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHH
Confidence 346665555555555433333456678889999999987765577777777655321 1221 2455667777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCc----------------------------------------chhhhhcHHHHHH
Q 000049 1345 QLMKSDKYGERRGAAFGLAGVVKGFGI----------------------------------------SSLKKYGIAATLR 1384 (2629)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~----------------------------------------~~l~~~~i~~~L~ 1384 (2629)
.+...++...-.+++..|..+...... ..+...++++.|.
T Consensus 384 llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv 463 (778)
T 3opb_A 384 MIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLK 463 (778)
T ss_dssp HHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHH
Confidence 776434445666666666666653221 0011225677777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhhcHHh----
Q 000049 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQG---- 1455 (2629)
Q Consensus 1385 ~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~---VR~aa~~al~~i~~~l~~~~---- 1455 (2629)
..+.+. ++..|+.++.++..++... .....+. ..++.++..+.+.... +|..|..++..+.-...+..
T Consensus 464 ~Ll~S~-s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~ 540 (778)
T 3opb_A 464 REMHNL-SPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKK 540 (778)
T ss_dssp HHGGGS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSS
T ss_pred HHHcCC-CHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCC
Confidence 777766 7899999999999998542 1223332 4788899988776544 89889888888875444332
Q ss_pred --HHhhHHHHHhhhcc-CCh-------------hhhHHHHHHHHHHHhhCc---hhhhh-hcc--chHHHHhhhhcCCCH
Q 000049 1456 --VKLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLTDTHP 1513 (2629)
Q Consensus 1456 --v~~ilp~Ll~~L~~-~~w-------------~~r~~a~~~L~~la~~~p---~~l~~-~L~--~ivp~L~~~L~D~~~ 1513 (2629)
....+|+|++.|.. ..- ..+..|+.+|.+++.... +.... -+. +.+|.+..++.+.+.
T Consensus 541 ~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~ 620 (778)
T 3opb_A 541 YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENV 620 (778)
T ss_dssp SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSH
T ss_pred CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCH
Confidence 13678999988872 211 227789999999998642 22222 232 478999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCchhH--HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHH
Q 000049 1514 KVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2629)
Q Consensus 1514 ~VR~aA~~aL~~l~~~~~~~~i--~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~ 1591 (2629)
.||.+|++++.+++.. ++. +. .....+ +.-..-++.+...++..+.+
T Consensus 621 ~VrrAA~elI~NL~~~---~e~i~~k-------~~~~~~---------------------~~~~~rL~lLV~Ll~s~D~~ 669 (778)
T 3opb_A 621 PLQRSTLELISNMMSH---PLTIAAK-------FFNLEN---------------------PQSLRNFNILVKLLQLSDVE 669 (778)
T ss_dssp HHHHHHHHHHHHHHTS---GGGTGGG-------TSCCSS---------------------HHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHH-------HHhhcC---------------------chhhccHHHHHHHHcCCCHH
Confidence 9999999999999852 210 00 000000 11111245666777778899
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccchH--hhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 000049 1592 TKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~ 1649 (2629)
+|++|+.++.++... .+......+ ...++.+..++.+ +++++|..++.++..++..
T Consensus 670 ~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 670 SQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 999999999998642 211111111 2466777777777 8999999999999999973
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-08 Score=117.44 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=134.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
..++.++..+.|+++.||..+..++..+.. ...+|.+++.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 457778888899999999999888877632 3567888888888899999999999988742 45
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
.++.+...++|+++.||..|+.+|+.++. ...++.|.+.+.|++..+| .++..|.... -...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---------DERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------CGGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------CHHHH
Confidence 67888888999999999999999988864 2356677777777777776 4555554311 02356
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
+.|.+.+.|.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 667777777777788887777777632 345666777777777788888887777765543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-09 Score=143.36 Aligned_cols=219 Identities=14% Similarity=0.068 Sum_probs=116.5
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000049 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2629)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2629)
..++|.+.. |++++++.|..+|.+|++++.......+..+.+.+.+.+...+.|++.+||.+|+.+|..++...|.+..
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 356676654 7889999999999999998753322222222234555667789999999999999999999988887665
Q ss_pred hh-----hHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhH-hhh
Q 000049 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTI 2075 (2629)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l-~~i 2075 (2629)
+. ++|.|+..|+........+..............++.+. .....++.+|++.....+.... ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDIT---------GSLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHH---------HHHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHhccc
Confidence 44 67777766643211000000000000000000000000 0112344445543222222211 245
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH-Hhch
Q 000049 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVI-------DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFY-KNSK 2144 (2629)
Q Consensus 2076 l~~Ll~~L~---~~~~~vr~~a~~al~~l~~~~-------~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~-~~~~ 2144 (2629)
+|.++..+. ....+++..+..|+..+...- ..++...++..++...++.++. |..++..+.+++ ....
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~~~~ 262 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTSLQW 262 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhhhhh
Confidence 566666552 234678888888888776532 1122233445555544444444 555555555554 3333
Q ss_pred hhhhhhH
Q 000049 2145 LYLVDEA 2151 (2629)
Q Consensus 2145 ~~~~~~~ 2151 (2629)
.+++.+.
T Consensus 263 ~d~s~~~ 269 (684)
T 4gmo_A 263 MDHSPGK 269 (684)
T ss_dssp BTTBCCG
T ss_pred hhcchhh
Confidence 4444443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-05 Score=102.19 Aligned_cols=553 Identities=13% Similarity=0.112 Sum_probs=290.9
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
.++..|+..+...++.+.+ --+-++-.+...++-.|.. +.-++..+ ++.-..++||..+.-+...+.+..+.. +.
T Consensus 132 ~ll~~~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~-~~ 206 (778)
T 3opb_A 132 ALLNELQIRIHYGEDTHVT-YLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKD-FD 206 (778)
T ss_dssp HHHHHHHHHHHHTCSSCHH-HHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhhcCCCcchh-HHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchH-HH
Confidence 5666666666533344322 3444444555555544433 22222222 224566788887766666665544433 33
Q ss_pred hhHHHHHh-hh----ccCChhhhHHHHHHHHHHHhhCchhhhhh-c-cchHHHHhhhh-cCCCHHHHHHHHHHHHHHhhh
Q 000049 1458 LVLPSLLK-GL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQC-L-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1458 ~ilp~Ll~-~L----~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L-~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
..+-.+++ .+ .+..-..-..++.++..+.-..|.....- + .+..+.+.+.+ ......+..++.+.|...+..
T Consensus 207 ~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~ 286 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID 286 (778)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC
Confidence 33333333 22 11111222233444444333344432221 1 34556666555 344566667776666665532
Q ss_pred cCchh--HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1530 IKNPE--IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1530 ~~~~~--i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
-...+ .+.+++.|...+.+ +.+| .|.-.|.+..........+...+.+.+.+.+.+.+.+.++.|.+.+..+.-.
T Consensus 287 ~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~ 364 (778)
T 3opb_A 287 ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 22222 26677788777765 3455 3444444321111222345567888899999887666688888888776431
Q ss_pred cCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHhc-cCCChHHHHHHH
Q 000049 1607 VTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALK-SDNSNVERSGAA 1679 (2629)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~~-----~~~~ll~~Ll~~L~-~~~~~~~R~~a~ 1679 (2629)
.+.++....-+.++..|...+.+ .+..+-..+...|..+....... .+..+.++.-.... .+...... ...
T Consensus 365 -~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~ 442 (778)
T 3opb_A 365 -ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAK 442 (778)
T ss_dssp -SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHH
T ss_pred -HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cch
Confidence 11111111224567777788874 56677788888888887754421 11122211111000 00000000 000
Q ss_pred HHHHH-HHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhh-H-HhHHHHHHhhcCCCChh---H
Q 000049 1680 QGLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-L-QQVLPAILDGLADENES---V 1753 (2629)
Q Consensus 1680 ~~L~~-i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~-l-~~ii~~ll~~L~d~~~~---V 1753 (2629)
..+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..- ..... + ...+++++..+....+. +
T Consensus 443 ~~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~ 517 (778)
T 3opb_A 443 EDILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPI 517 (778)
T ss_dssp HHHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHH
T ss_pred HHHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHH
Confidence 11111 1111110 347888899898999999999999999998542 22222 2 24788899888766543 7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHH
Q 000049 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2629)
Q Consensus 1754 R~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l 1833 (2629)
|..|..++..+.-...+. +. +.. ... ..++.-+-.++.. +. +.+...
T Consensus 518 k~~AA~ALArLlis~np~--------~~---f~~-~~~-~~aI~pLv~LL~~--~~--------~~~~~~---------- 564 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPG--------LI---FKK-YSA-LNAIPFLFELLPR--ST--------PVDDNP---------- 564 (778)
T ss_dssp HHHHHHHHHHHHHTSCHH--------HH---SSS-SCS-TTHHHHHHHTSCC--SS--------SCSSCC----------
T ss_pred HHHHHHHHHHHHhcCCHH--------HH---cCC-Ccc-ccchHHHHHHcCC--CC--------Cccccc----------
Confidence 888888888776432211 10 000 000 0122222222210 00 000000
Q ss_pred HHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh---hhH-hhhHH--HHHHHHHHHhcCCCHHHHHHHHH
Q 000049 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGR 1907 (2629)
Q Consensus 1834 ~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~---~~l-~~~l~--~Ll~~L~~~L~~~~~~~R~~A~~ 1907 (2629)
++ ........-+..|+.++..++.... +.. ..++. ..++.+...+.+.+..+|..|++
T Consensus 565 ---------------l~-~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~e 628 (778)
T 3opb_A 565 ---------------LH-NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE 628 (778)
T ss_dssp -------------------CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred ---------------cc-ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHH
Confidence 00 0000111224456667777776541 222 23444 47888888999999999999999
Q ss_pred HHHHHHHHhcc---chh----hh---HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHHhc
Q 000049 1908 ALGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALC 1975 (2629)
Q Consensus 1908 ~L~~lv~~~~~---~~l----~~---llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~ 1975 (2629)
++..++..... .+. +. =++.|...+...+.++|.+++.+|+.+..... ......+ ...++.+...+.
T Consensus 629 lI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~-~ia~~ll~~~~gi~~Ll~lL~ 707 (778)
T 3opb_A 629 LISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP-LIAKELLTKKELIENAIQVFA 707 (778)
T ss_dssp HHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHccccHHHHHHHHh
Confidence 99999863321 121 11 16778888888999999999999987643221 1111111 346667777777
Q ss_pred C--CcHHHHHHHHHHHHHHHH
Q 000049 1976 D--SILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1976 d--~d~~VR~~A~~al~~l~~ 1994 (2629)
+ .++++|..++.++..+..
T Consensus 708 ~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 708 DQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HTTTCHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHH
Confidence 7 899999999999998886
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-07 Score=121.68 Aligned_cols=337 Identities=14% Similarity=0.124 Sum_probs=221.6
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchh---
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE--- 1534 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~--- 1534 (2629)
.+|.++..|.++++..+..|+.+|..++...+..- .-.-.+.+|.|+++|.++++.++..|+++|..++.. +++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 36788888888888899999999999886544321 222357899999999999999999999999999874 232
Q ss_pred -H--HhHHHHHHhccC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhh--------cC--------CCHHHH
Q 000049 1535 -I--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETK 1593 (2629)
Q Consensus 1535 -i--~~lvp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L--------~d--------~~~~vr 1593 (2629)
+ ...+|.|.+.+. +++..++ .+..+|.................+|.|.+.+ .+ .+..+.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 356899999998 6666665 5555554322222211222236778888877 22 235666
Q ss_pred HHHHHHHHHHhhhcCCCCcccchH--hhhHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhh---------------
Q 000049 1594 KKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM--------------- 1650 (2629)
Q Consensus 1594 ~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d------~~~~VR~~A~~aL~~l~~~~--------------- 1650 (2629)
+.++.++.+++.. ++...... +..++.|..++.+ ++..++..+..++..+....
T Consensus 161 ~~a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 161 FNATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 7999999999863 11111111 2466666666653 34456666666665553110
Q ss_pred -------------------------------------CCC--CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh
Q 000049 1651 -------------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2629)
Q Consensus 1651 -------------------------------------g~~--~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~ 1691 (2629)
|-+ ...+.++.|+..+.+......+..++.+|+.++.+-+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 000 12356777778787766566677788889988764432
Q ss_pred h-------HH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH-HhHHHHHHhhcCCCC------hhHHH
Q 000049 1692 V-------YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADEN------ESVRD 1755 (2629)
Q Consensus 1692 ~-------~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~------~~VR~ 1755 (2629)
. .+ ...+|.+++.+.+++..+|..++.++..++.. ......+ ...+|++.+.|...+ +++..
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 1 12 35689999999999999999999999999863 3333333 358999999998653 35666
Q ss_pred HHHHHHHHHHHHhhhc--hh--hhHHHHHhhccCCC-chHHHHHHHHHHHHH
Q 000049 1756 AALGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2629)
Q Consensus 1756 ~al~al~~iv~~~~~~--~i--~~llp~l~~~l~d~-~~~vR~sa~~ll~~l 1802 (2629)
.++.++..++..-+.. .+ .-.+|.+.+.+.+. +.+++..+..++..+
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7777777766422211 11 12567777777777 788888887777654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=111.81 Aligned_cols=185 Identities=22% Similarity=0.200 Sum_probs=147.3
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
..++.|.+.+.+. ++.+|..|+.+++.+.. ...+|.++..+.|+++.||..+..++..+.. .
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4567788888876 89999999888776532 2457788889999999999999988887732 3
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
..+|.+++.|.++++.+|..++.+|+.+.. +..++.+..+++|+++.||..|+.+|+.++. ..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 143 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 143 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------HH
Confidence 567888899999999999999999998753 4567888999999999999999999999864 24
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
.++.|...+.|++..+| .++..|.... -...++.|...+.+.++.+|..|..+++.+...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 67888888999999888 5666665421 145678888888999999999999999887654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.6e-07 Score=94.83 Aligned_cols=215 Identities=17% Similarity=0.285 Sum_probs=164.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCcccc
Q 000049 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2629)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2629)
..++..++..+.|+-|.+|.+|+..+..+.+..+.-+ ..++..|+.++. +..-...+....+++.+..-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 4677888888999999999999999999987655433 455666666654 434444444555555554321
Q ss_pred cchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch
Q 000049 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2629)
Q Consensus 2190 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2629)
|+-+.+++|.+.....-|++..|.....+|+++....| ..+.
T Consensus 102 ----------------------------------Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~--- 143 (253)
T 2db0_A 102 ----------------------------------PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMA--- 143 (253)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHH---
T ss_pred ----------------------------------HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHH---
Confidence 34566788888888888999999999999999997765 3333
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhH
Q 000049 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP 2349 (2629)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ 2349 (2629)
.+..-+...+.++ +..-|.++|.+++.++......+.||+|.|.. .|.|.++-||.+|..+|++++...|.+.+
T Consensus 144 -~v~rdi~smltsk-d~~Dkl~aLnFi~alGen~~~yv~PfLprL~a----LL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 144 -SIVRDFMSMLSSK-NREDKLTALNFIEAMGENSFKYVNPFLPRIIN----LLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp -HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHG----GGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred -HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccCccccCcchHHHHH----HHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 3334445566654 67889999999998887766677888887654 67899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 000049 2350 LVGDLLSSLQVSDAGIREAILTALKGVLK 2378 (2629)
Q Consensus 2350 ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~ 2378 (2629)
.+...++.++++...++..+-.+|..+.-
T Consensus 218 ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888876653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=113.59 Aligned_cols=237 Identities=19% Similarity=0.125 Sum_probs=174.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--- 1454 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--- 1454 (2629)
.++.+.+.+.+. ++..|..|+.++..++...+......+. ..+|.++..+.++++.+|..+..++..+...-...
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 456777788776 6889999999999988654422222222 58999999999999999999999999886542221
Q ss_pred hH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
.+ ...+|.++..+.++++.++..++.+|+.++...+...... -.+.+|.+.+++.++++.||..|+.+|+.++..-
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 11 3578999999999999999999999999997555432211 2468999999999999999999999999998532
Q ss_pred hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000049 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2629)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2629)
+... +.+. -..++|.+...+.+.++.+|..++.++++++.. .+..
T Consensus 160 ~~~~---------------------~~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 204 (252)
T 4hxt_A 160 DEAI---------------------KAIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSA 204 (252)
T ss_dssp HHHH---------------------HHHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHH
T ss_pred HHHH---------------------HHHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence 1110 0000 023566777777777889999999999998862 2111
Q ss_pred ccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1613 l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
.... -..+++.+..++.++++.+|..|..+|+.+....+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 2457899999999999999999999999999865543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=109.70 Aligned_cols=184 Identities=22% Similarity=0.198 Sum_probs=147.6
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
...+.+.+.+.+. ++.+|..|+.+++.+.. ...++.++..+.|+++.||..+..++..+.. .
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------~ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 75 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------G
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4566777888877 89999999988876532 1456778888999999999999988877632 3
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
..+|.+.+.|.++++.+|..++.+|+.+.. +..++.+...++|+++.||..|+.+|+.++. ..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 138 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 138 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HH
Confidence 567888899999999999999999998743 4577888899999999999999999999864 24
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
.++.|...+.|++..+| .++..|.... -...++.|...+.+.++.+|..+..+++.+..
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 67888888999988888 5666665421 13467888888889999999999999987643
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.6e-08 Score=115.61 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=163.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2629)
.+.+...+.++++.+|..|..++..+... ..... ...+|.+++.|.++++.++..++.+|+.++...+......
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45556667778889999999999766554 22221 3578999999999999999999999999998655543222
Q ss_pred c-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch--hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccC-
Q 000049 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 1569 (2629)
Q Consensus 1497 L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~- 1569 (2629)
. .+.+|.+..+++++++.||..|+.+|++++..-.+. .+ ...+|.|.+.+.+++..++ .++.++.........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 2 368999999999999999999999999998653322 11 3588999999999888776 566665532111100
Q ss_pred -ChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1570 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1570 -~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
..-.-..++|.+.+.+.+.++.++..++.++++++.. .+.....+ -...++.+..++.++++.+|..|..+|+.++
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 0011145789999999999999999999999999852 22111111 2347888999999999999999999998775
Q ss_pred h
Q 000049 1648 R 1648 (2629)
Q Consensus 1648 ~ 1648 (2629)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-06 Score=111.86 Aligned_cols=346 Identities=13% Similarity=0.064 Sum_probs=228.1
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc---h--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh---hC
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG---FG 1370 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~---~--~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~---lg 1370 (2629)
..-++.+++.|..+++++|..++.+|..+.....+. . ...++.|++.|. +.+...+..|+.+|..++.+ -.
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHH
Confidence 456788899999999999999999887776422111 1 235677777765 45679999999999999864 12
Q ss_pred cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc------------------CCC
Q 000049 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQ 1432 (2629)
Q Consensus 1371 ~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l------------------~D~ 1432 (2629)
...+.....++.|.+.+.+..+...++.+..++..|+.. ...-...+...+|.|+..+ ..+
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 233334567888888887644677788888888888752 2111122234566666644 123
Q ss_pred CHHHHHHHHHHHHHHHHhhcH--HhH---HhhHHHHHhhhcc------CChhhhHHHHHHHHHHHhhCchhh--------
Q 000049 1433 VVAVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQL-------- 1493 (2629)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~la~~~p~~l-------- 1493 (2629)
++.|++.|..+++.+...-.. ..+ ..+++.|+..+.+ .+.+....++.+|.++++......
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 578999999999888653221 111 2356677766643 355778889999998887531111
Q ss_pred -----------------hh-hccchHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcC--ch----hH--HhHHHHHHhcc
Q 000049 1494 -----------------SQ-CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIK--NP----EI--ASLVPTLLMGL 1546 (2629)
Q Consensus 1494 -----------------~~-~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~--~~----~i--~~lvp~Ll~~l 1546 (2629)
.. ..+..++.++.++.+ .++.++++|+.||..++..-. .. .+ ...+|.|.+.+
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 00 123557788888864 589999999999999975311 01 12 45689999999
Q ss_pred CCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHhhhcCCCCcccc-h
Q 000049 1547 TDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIP-Y 1616 (2629)
Q Consensus 1547 ~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~--------~~~vr~~a~~~l~~l~~~~~~~~~l~~-~ 1616 (2629)
..++..++ .++.+|.............-...+|.|.+.|.+. +.++...++.++++++.. +++.... .
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~ 442 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLR 442 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence 98887765 4555554322222222223356788898888764 467888999999998752 2211111 1
Q ss_pred HhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000049 1617 IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~ 1648 (2629)
-...+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 443 ~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 235778888888875 78889999998888875
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-06 Score=114.62 Aligned_cols=342 Identities=13% Similarity=0.098 Sum_probs=221.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000049 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2629)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2629)
++.+.+.+.+. ++..|..|+.++..++..-.. ....+. ..+|.++.++.++++.++..|..++..+...-++. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45666677666 678888999999888743221 221222 57999999999999999999999999997642222 1
Q ss_pred H--HhhHHHHHhhhc-cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhh--------cCC--------CHHHH
Q 000049 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2629)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L--------~D~--------~~~VR 1516 (2629)
+ ...+|.+++.|. +.+..++..++.+|..++.+ +..-.....+.+|.|+.++ .++ ++.|+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 346899999998 77899999999999999987 3221111237888899988 322 45666
Q ss_pred HHHHHHHHHHhhhcCch-hH---HhHHHHHHhccCC------CChh-HHHHHHHHHhccc--------------------
Q 000049 1517 SAGQTALQQVGSVIKNP-EI---ASLVPTLLMGLTD------PNDH-TKYSLDILLQTTF-------------------- 1565 (2629)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~-~i---~~lvp~Ll~~l~d------~~~~-~r~al~~L~~~~~-------------------- 1565 (2629)
..|+++|.+++..-.+. .+ ...+|.|...+.+ ++.. +..|+..+....+
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999751111 12 1577777776653 3322 2233332211000
Q ss_pred ----------cc----------------------cCChhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCC-C
Q 000049 1566 ----------VN----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 1611 (2629)
Q Consensus 1566 ----------~~----------------------~~~~~~l~~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~-~ 1611 (2629)
.. ....-....+++.+...+.+ .++.++..++.++++++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 00 00000112345666666654 46899999999999998631110 0
Q ss_pred cc-cchH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--CchhhHHHHHHHhccCCC-----hHHHHHHHHH
Q 000049 1612 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 1681 (2629)
Q Consensus 1612 ~l-~~~l--~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~--~~~~ll~~Ll~~L~~~~~-----~~~R~~a~~~ 1681 (2629)
.+ .... ...+|.+.+++.+++.++|..|+.+|+.++..-.-. .-...+|.|.+.|...++ ..+...++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1111 357899999999999999999999999998732111 124578888888876533 2234456666
Q ss_pred HHHHHHhhChh--HH--HhHhHHHHHhhcCC-ChhhHHHHHHHHHHhh
Q 000049 1682 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2629)
Q Consensus 1682 L~~i~~~~g~~--~l--~~llp~l~~~l~~~-~~~vR~~a~~~l~~L~ 1724 (2629)
++.++..-... .+ ...++.+.+.+.+. +..+++.+..++..+.
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77776543322 12 35678888888888 8999999998887665
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-07 Score=109.63 Aligned_cols=230 Identities=18% Similarity=0.160 Sum_probs=174.1
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC--cch
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 1373 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~ 1373 (2629)
.++.+++.|.++++++|..++.++..+.....+.. ...++.+++.+... +...|..|+.+|..++.... ...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence 36788889999999999999999988865433211 24567777766554 57899999999999986421 122
Q ss_pred hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000049 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
+...+.++.+.+.+.+. ++..|..|+.++..++...+......+ ...+|.++..+.++++.+|..+..++..+...-.
T Consensus 82 ~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 22346788888889876 799999999999999853322111111 1579999999999999999999999998876432
Q ss_pred HH--hH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1453 AQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1453 ~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.. .+ ...+|.+++.+.++++.++..++.+|+.++...+...... -.++++.+.+++++.++.||..|+++|.+++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 22 11 4588999999999999999999999999997655533222 2568899999999999999999999999999
Q ss_pred hhcCc
Q 000049 1528 SVIKN 1532 (2629)
Q Consensus 1528 ~~~~~ 1532 (2629)
....+
T Consensus 241 ~~~~~ 245 (252)
T 4hxt_A 241 SGGWL 245 (252)
T ss_dssp HTCBC
T ss_pred cCCCc
Confidence 76543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-06 Score=112.76 Aligned_cols=342 Identities=13% Similarity=0.094 Sum_probs=204.9
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh--cCch-hH
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-EI 1535 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~-~i 1535 (2629)
+|.+++.|.+.+...+..|+..|..++...+..- .-.-...+|.|+.+|.+.++.||..|+++|.+++.. -.+. .+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3344444444444444444444444443222210 011135679999999999999999999999999863 2222 22
Q ss_pred --HhHHHHHHhccCC-CChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhh------------------cCCCHHHH
Q 000049 1536 --ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAETK 1593 (2629)
Q Consensus 1536 --~~lvp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L------------------~d~~~~vr 1593 (2629)
...+|.|+..+.+ ++..++ .+..+|.................+|.|.+.+ ...+.+++
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 4568888888875 444544 3333332211111111112223456665543 11246899
Q ss_pred HHHHHHHHHHhhhcCC-CCcccchHhhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCC--------------
Q 000049 1594 KKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMGE-------------- 1652 (2629)
Q Consensus 1594 ~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~VR~~A~~aL~~l~~~~g~-------------- 1652 (2629)
..++.+|.+++..-.+ .+.+.. ...+++.|...+. +++....+.|..+|..+......
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 9999999999863111 011111 1234445555443 34567778888888777654210
Q ss_pred ----------C-----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh------HH--HhHhHHHHHhhcCCC
Q 000049 1653 ----------E-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNCSHQR 1709 (2629)
Q Consensus 1653 ----------~-----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~------~l--~~llp~l~~~l~~~~ 1709 (2629)
. .-...++.|+..+........+..++.+|..++.+-+.. .+ ...+|.+.+.+.+++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 0 013456777888876555667778888898887643221 12 356899999999999
Q ss_pred hhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCC--------ChhHHHHHHHHHHHHHHHhhh--chh-h-hHH
Q 000049 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYAT--TSL-P-LLL 1777 (2629)
Q Consensus 1710 ~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~--------~~~VR~~al~al~~iv~~~~~--~~i-~-~ll 1777 (2629)
..+++.++.++.+|+...... ...-...+|.+.+.|.+. .+++...++.++..++..-.. ..+ + -.+
T Consensus 369 ~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I 447 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Confidence 999999999999999754432 122345899999999865 356777788888776632111 111 1 256
Q ss_pred HHHhhccCCC--chHHHHHHHHHHHHHH
Q 000049 1778 PAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1778 p~l~~~l~d~--~~~vR~sa~~ll~~ll 1803 (2629)
|.+...+.+. ..+++..|..++..+.
T Consensus 448 ~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 448 EKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 6776666654 5677777777777664
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-07 Score=114.82 Aligned_cols=227 Identities=18% Similarity=0.179 Sum_probs=170.6
Q ss_pred hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC--cc
Q 000049 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--IS 1372 (2629)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~ 1372 (2629)
.-++.+.+.|.++++++|..++.++..++....+.. ...++.+++.|... +...|..|+.+|..++.+.. ..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 346777888888899999999999976665422111 23566777766554 47899999999999986422 12
Q ss_pred hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000049 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1373 ~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2629)
.+...+.++.|.+.+.+. ++..|..|+.+++.++..........+. ..+|.++..+.++++.||..+..++..+...-
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 222346788999999886 7999999999999997643321112222 58999999999999999999999999887543
Q ss_pred cHHh---H-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1452 SAQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1452 ~~~~---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
.... + ...+|.+++.+.+++..++..++.+|+.++...+....... .++++.+..++.+.+++||..|+++|.++
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2221 1 46789999999999999999999999999976665433222 46889999999999999999999999988
Q ss_pred hh
Q 000049 1527 GS 1528 (2629)
Q Consensus 1527 ~~ 1528 (2629)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 64
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-06 Score=119.95 Aligned_cols=770 Identities=12% Similarity=0.068 Sum_probs=376.2
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc----CChhhhHHHHHHHH--HH
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED----KAWRTKQSSVQLLG--AM 1485 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~----~~w~~r~~a~~~L~--~l 1485 (2629)
+.+.+.-..++..++......-+.||..|..++..++..+. .....++|.+++.|+. .+...-+||+.+|. .+
T Consensus 125 r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~-gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 125 RKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLV-GSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp BCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBT-THHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred cCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 34666667888888888888899999999999999998774 3457788888887754 46677788888764 33
Q ss_pred HhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH-----HhHHHHHHhccCCCChhHHHHHHHH
Q 000049 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2629)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~lvp~Ll~~l~d~~~~~r~al~~L 1560 (2629)
....-. --.+++.+++.++++....+|.|+..+..+...+...+..|.. ..++ ..+..|++.+..+++..
T Consensus 204 ~~~~~~-d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 204 HRKLMT-DYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHHGGG-CHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHH
T ss_pred hhHHhc-ChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHH
Confidence 332221 1234678888888888777889988888777777665543311 1111 12222221111111110
Q ss_pred Hhc--cccccCChhhhhhHHHHHHHhh-cCCC--HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHH
Q 000049 1561 LQT--TFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2629)
Q Consensus 1561 ~~~--~~~~~~~~~~l~~i~p~L~~~L-~d~~--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~V 1635 (2629)
-.. .-... -...+..+...+.... ++.. |+....++..+-++..... .|+-+.++..+.+.+.++.|.+
T Consensus 279 ~~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d-----~~~~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 279 KLAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE-----SKPDKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS-----CCCCHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHhhcCCCHHH
Confidence 000 00000 0001112222222322 2235 7777766666544443211 3445677777777777777888
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHH
Q 000049 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1636 R~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
|..|..++..+....... - ....+ .. + ..+. ...|.-++...++++...+.
T Consensus 353 R~~a~~~l~~il~~~k~~--------~---~~~~d-~~-~------------~~~~----~~~p~~~~l~~~~~~~~~~~ 403 (997)
T 1vsy_5 353 IHLVVKSLLSTCNKIISL--------S---DYEYD-IT-R------------AYKN----EFNPSFVEILDTSTTSFPKT 403 (997)
T ss_dssp HHHHHHHHTHHHHHHHHH--------H---HHTTC-GG-G------------GSSS----SCCCTTEEEEESCSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhh--------h---cCCCc-HH-H------------hhcc----ccCCCCceecCCCCccHHHH
Confidence 888877777666543210 0 00000 00 0 0000 00000000000001111111
Q ss_pred HHHHHHH------hh--h-hh-----ccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHh
Q 000049 1716 YLTLFKY------LP--R-SL-----GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2629)
Q Consensus 1716 a~~~l~~------L~--~-~~-----g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~ 1781 (2629)
....+.. +. . .. |..+.-|-+.- ..+ +-+ +.-..+.+.++ +...++-++.+...+.
T Consensus 404 ~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~-----~~l-~~~-~~e~~i~~~f~---~~~~~~~~~~l~~~l~ 473 (997)
T 1vsy_5 404 FTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKA-----LKL-NLR-ENELEVLKTAG---HLLTREFLRDVTMNLV 473 (997)
T ss_dssp HHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTC-----CCC-CCC-HHHHHHHHHHH---TTCCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCC-----CCC-CCC-HHHHHHHHHHH---hhcCHHHHHHHHHHHH
Confidence 1111000 00 0 00 11111110100 111 111 11111222211 1111222222222222
Q ss_pred hccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHH
Q 000049 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2629)
Q Consensus 1782 ~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR 1861 (2629)
+. .+.+.+.+..-+.++..+..-+. ...|...++.+.+.+-....|.+..-.
T Consensus 474 qe-~~~~~~F~~~~v~l~k~lf~l~~---------------------------rn~~~~~l~~l~~~~e~L~~~~dk~~q 525 (997)
T 1vsy_5 474 QD-NETRGVFSSGNVSFFSLVILLIS---------------------------SGFCELNMSDLFELCESYYNKDDKASM 525 (997)
T ss_dssp HT-TTTTCCCCHHHHHHHHHHHHHHT---------------------------TTTCCCCGGGHHHHHHHTCCSSCHHHH
T ss_pred hh-ccccCccccchHHHHHHHHHHHh---------------------------cccchhhHHHHHHHHHHHhccccHHHH
Confidence 11 11111111222222222221000 111222223333333233455666678
Q ss_pred HHHHHHHHHHHhcCh----hhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhh---c-
Q 000049 1862 QAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG---L- 1932 (2629)
Q Consensus 1862 ~aA~~~l~~l~~~~~----~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~---L- 1932 (2629)
.+|++++..++.+.. ........-+.|.+-+.+. +-+++....-..|+.-+....++.-.+.++..+... +
T Consensus 526 r~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~ 605 (997)
T 1vsy_5 526 IMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFD 605 (997)
T ss_dssp HHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccC
Confidence 888999998887533 3344566677777878887 456655555555666666665655556666655321 1
Q ss_pred -CCCCh---hHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHH
Q 000049 1933 -KDPSA---SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008 (2629)
Q Consensus 1933 -~d~~~---~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~L 2008 (2629)
.+... ..|.... ..++...+-. ... ...++..+. +..+...||++....+..++...-...+.. +..+
T Consensus 606 ~~~~ssf~~~~rl~ll---~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~-~~~~ 677 (997)
T 1vsy_5 606 RESDAATHQTSKIYML---RSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD-PTTL 677 (997)
T ss_dssp CCSSCCCCCCSSHHHH---HHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC-HHHH
T ss_pred CCCCcHHHHHHHHHHH---HHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC-HHHH
Confidence 11111 1233222 2222222211 111 233344434 788899999999998888876531111111 1223
Q ss_pred HHhccCc---------CchhHHHHHHHHHHhh---hccCcCcccchhhhcCCCchh----HHHHHHHHHHHhCCC----h
Q 000049 2009 LHALEDD---------QTSDTALDGLKQILSV---RTTAVLPHILPKLVHLPLSAF----NAHALGALAEVAGPG----L 2068 (2629)
Q Consensus 2009 l~~L~~~---------~~~~~aL~~L~~il~~---~~~~ilp~Lip~L~~~~~~~~----~~~aL~~La~~~g~~----l 2068 (2629)
++.-... .........+..++.. -...+- ...|. ...... ....+..|...++.. +
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~~~~~---~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l 753 (997)
T 1vsy_5 678 LEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-GLNPQ---QFIKTDYFYRTSTIFYWIKEMARGPNKVLL 753 (997)
T ss_dssp HHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-SCCST---TTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred HHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-ccCcc---ccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 3221111 0011222223222210 000000 00000 000111 123444555555554 7
Q ss_pred hhhHhh-hHHHHHHhcCCCCH-HHHHH-HHHHHHHHHhhc-ccccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHH-Hh
Q 000049 2069 NFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLVI-DEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFY-KN 2142 (2629)
Q Consensus 2069 ~~~l~~-il~~Ll~~L~~~~~-~vr~~-a~~al~~l~~~~-~~~~~~~ll~~Ll~~l~-d~~~~vR~~a~~~L~~l~-~~ 2142 (2629)
.++++. ++|.++.....++. ++... +..++..+.... ..+.++.++..+....+ +.+| .|.+++..+..|. .+
T Consensus 754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 788887 88888887765554 44444 444555543222 34557777777766665 5789 9999999887764 33
Q ss_pred chhhhhhhHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc-CcccccchHHHHHHHHhhhhhhhhhhhcCCcccccC
Q 000049 2143 SKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2629)
Q Consensus 2143 ~~~~~~~~~~~il~~Ll~ll~d~d-~~V~~~a~~aL~~l~~~~-~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2629)
.-.--......++..++.++.|+. .+||+.|..+|+.++.+. +......++..++.....
T Consensus 833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~------------------ 894 (997)
T 1vsy_5 833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV------------------ 894 (997)
T ss_dssp TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT------------------
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh------------------
Confidence 321112233577888888999999 999999999999998775 422222222221111000
Q ss_pred CCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhh--hhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHH
Q 000049 2221 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL--KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2629)
Q Consensus 2221 ~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l--~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~ 2298 (2629)
.+.... ++- .. ..+...|..|..+|+.++...| -.+ .++++.++..|.+...+ +..++.++=.+|++
T Consensus 895 ---~~~~~~-~~~---~~-~~~~~~rH~aVLgL~AlV~a~P-y~vP~P~w~P~~l~~La~~~~~--~~~i~~tvk~tlse 963 (997)
T 1vsy_5 895 ---NKYTSK-ERQ---KL-SKTDIKIHGNVLGLGAIISAFP-YVFPLPPWIPKNLSNLSSWART--SGMTGNAAKNTISE 963 (997)
T ss_dssp ---TSSCHH-HHH---HH-HHHCHHHHHHHHHHHHHHTTCS-CCSSCCTHHHHHHHHHHTTSSS--CSSHHHHTHHHHHH
T ss_pred ---cccccc-ccc---cc-chHHHHHHHHHHHHHHHHhhCC-CCCCCCcccHHHHHHHHHHhCC--CCchHHHHHHHHHH
Confidence 000100 111 10 1112567789999999998887 444 67888887777666666 45588888888888
Q ss_pred HHHh
Q 000049 2299 IIRK 2302 (2629)
Q Consensus 2299 L~~~ 2302 (2629)
+-+.
T Consensus 964 FkrT 967 (997)
T 1vsy_5 964 FKKV 967 (997)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-05 Score=111.96 Aligned_cols=423 Identities=15% Similarity=0.087 Sum_probs=239.5
Q ss_pred hhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH----hhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhch
Q 000049 2069 NFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT----LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2629)
Q Consensus 2069 ~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~----~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~ 2144 (2629)
..++.+++..+.+.-.+ +..-+..-...+..++ .++++..++.+.+.+-..+.+++.....+|++.++.+....+
T Consensus 462 ~~~~~~l~~~l~qe~~~-~~~F~~~~v~l~k~lf~l~~rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK 540 (997)
T 1vsy_5 462 REFLRDVTMNLVQDNET-RGVFSSGNVSFFSLVILLISSGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSK 540 (997)
T ss_dssp HHHHHHHHHHHHHTTTT-TCCCCHHHHHHHHHHHHHHTTTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cCccccchHHHHHHHHHHHhcccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccC
Confidence 45667776666543211 1111222222333333 355666677788888887888888889999999999876654
Q ss_pred h----hhhhhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhh---h-hhhhhcCCc
Q 000049 2145 L----YLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRD---K-ERRKKKGGP 2215 (2629)
Q Consensus 2145 ~----~~~~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~---~-~~~~~~~~~ 2215 (2629)
. .......-+.+.|-..++ +-.++.......++..+....+....+.+++ .+..... . .........
T Consensus 541 ~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e----~l~~~~~~l~~~~~ssf~~~~ 616 (997)
T 1vsy_5 541 FMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFC----HFINADGMFDRESDAATHQTS 616 (997)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHH----HHTCCCCCCCCCSSCCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHH----HHHHhhcccCCCCCcHHHHHH
Confidence 2 222333345555556676 5677777766666666666555443333333 2211110 0 000000000
Q ss_pred --cc------ccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChh-------------------hhhh-
Q 000049 2216 --IL------IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ-------------------SLKE- 2267 (2629)
Q Consensus 2216 --~~------l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~-------------------~l~p- 2267 (2629)
.. -.+...+. ...++..++ +.++...+|+..+..|+.+....-.. .+.+
T Consensus 617 rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 693 (997)
T 1vsy_5 617 KIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLK 693 (997)
T ss_dssp SHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSS
T ss_pred HHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccc
Confidence 00 01222232 455666666 77778999999999998888664100 0000
Q ss_pred ----chhhhhHHHHHHhc-------CCCCH-hHH---HHHHHHHHH-HHHhcCCC----ccCchHH-HHHHHHHHcCCCC
Q 000049 2268 ----FVIPITGPLIRIIG-------DRFPW-QVK---SAILSTLSI-IIRKGGIA----LKPFLPQ-LQTTFIKCLQDST 2326 (2629)
Q Consensus 2268 ----~v~~i~~~Li~~l~-------~~~~~-~vk---~~al~~L~~-L~~~~~~~----l~p~lp~-L~~~~~k~L~d~~ 2326 (2629)
.+...+.-+...+. ++.+. ..+ ...+.|+-. +...++.. +.||++. +.+.++....+.+
T Consensus 694 ~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d 773 (997)
T 1vsy_5 694 SVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKD 773 (997)
T ss_dssp CCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSH
T ss_pred cCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCc
Confidence 00000000111111 11110 011 111222222 11222222 3344444 4444444444443
Q ss_pred H-HHHHH-HHHHHHHHHhccCChhHHHHHHHHhhh-----cCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHh
Q 000049 2327 R-TVRSS-AALALGKLSALSTRVDPLVGDLLSSLQ-----VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2629)
Q Consensus 2327 ~-~vR~~-Aa~aLg~l~~~~~~~~~ll~~Ll~~l~-----~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2629)
. ++... |..++..+.. .+.....++.++..+. ++.. .|..++.-+..++-..--.++......|++.+..+
T Consensus 774 ~~eL~~~~a~~~l~~ls~-~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~ 851 (997)
T 1vsy_5 774 VCALASLDPVRLYAGLGY-MPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSN 851 (997)
T ss_dssp HHHHTTCCSHHHHHHTSS-SCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTT
T ss_pred HHHHHhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3 55555 5555555532 2334556666666653 2346 89888888776665433334455668999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhcCC------------CCchhhHhHHHHHHHHHhhCCcccc
Q 000049 2400 VYHDD-DHVRVSAASILGIMSQCM-EDGQLADLLQELLNLASS------------PSWAARHGSVLVFATFLRHNPSAIS 2465 (2629)
Q Consensus 2400 l~~~~-~~vr~~aa~~Lg~L~~~~-~~~~~~~~l~~ll~~~~~------------~~~~~~~~~~~~l~~~l~~~p~~~~ 2465 (2629)
+.|+. -+||.+||.+|+.+.+.. +......++..+..+... .+...+|+++++|++++...|-.+-
T Consensus 852 L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP 931 (997)
T 1vsy_5 852 LYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFP 931 (997)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSS
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 99999 999999999999999887 634445566555444322 1114689999999999999996653
Q ss_pred CChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhh
Q 000049 2466 MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2629)
Q Consensus 2466 ~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2629)
-+++..+++..|..+..+.+ +++.++-.+++..-..
T Consensus 932 ~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 932 LPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKKV 967 (997)
T ss_dssp CCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHhc
Confidence 36788899999999988855 4999998888876544
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=116.39 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=169.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhH
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~ 1417 (2629)
+.+.++..|.+. .|.+|.||+.+|..+++..|...-. . ...++ ..|+..+..++ + +.|.+|
T Consensus 175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR--~-------~~~N~------DLAvRLLCVLA--L-DRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDI--Q-------IRVDS------KLFSKIYEILV--T-DKFNDF 235 (800)
T ss_dssp TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----C--C-------CCCCT------THHHHHHHHHH--H-BCCBBC
T ss_pred HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCce--e-------ccccH------HHHHHHHHHHH--h-cccccc
Confidence 666777777755 5999999999999999877643221 1 01111 33444343333 2 224444
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh
Q 000049 1418 VIQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2629)
Q Consensus 1418 v~~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2629)
+ +|. ..-||++|+++++.+ ..+++. ..++-.++..+..+.|.+|++++..|..+ .+.+. .
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~-~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVE-D 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCC-C
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHH-H
Confidence 3 343 457999999999999 888776 45666667777888999999999999877 22222 2
Q ss_pred ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCCh---hHHHHHHHHHhc-cccccCChh
Q 000049 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND---HTKYSLDILLQT-TFVNTVDAP 1572 (2629)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~---~~r~al~~L~~~-~~~~~~~~~ 1572 (2629)
++.+++.++.+|.|.+.+||..|+.+|..++ ....+..++..++..+.+-++ .+..-++.|..- .+.. ...
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~ 371 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELS 371 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccc
Confidence 8999999999999999999999999999988 335688888888888765432 222223332220 1111 111
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHH-HHHHhcCCCHHHHHHHHHHHH
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE-VKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~-L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
..+.++|.|...+.+.-..||.++.+++..+. ...++.. +..++-++++++|..+.+.+.
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11277888888888888999999888876654 1123333 344566888999988888775
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=0.0003 Score=103.39 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=88.7
Q ss_pred cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHHhccchh
Q 000049 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS------------SSSERRQVAGRALGELVRKLGERVL 1921 (2629)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~------------~~~~~R~~A~~~L~~lv~~~~~~~l 1921 (2629)
+..++.+|..++.+|+.+...... -.++++.+++.++..+.+ .+.++|..|+.++..++..++....
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345678999999999988764332 135778888877777655 2347899999999999998877654
Q ss_pred h---hHHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhch-hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1922 P---SIIPILSRGLKDP---SASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1922 ~---~llp~L~~~L~d~---~~~vR~~a~~aL~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
| .+...+...+... +..-+.....+++.+....++ +....|+..+++.+.....+++ .+. +......++.
T Consensus 621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~~s~~~~f~~ 697 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-VLSDVDAFIA 697 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-HHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-hhcCHHHHHH
Confidence 4 4444444444422 245566666777665333333 3445668888888888776543 333 3333344444
Q ss_pred HhCh
Q 000049 1995 SAGM 1998 (2629)
Q Consensus 1995 ~~g~ 1998 (2629)
.+|-
T Consensus 698 ~~G~ 701 (1204)
T 3a6p_A 698 YVGT 701 (1204)
T ss_dssp HHTS
T ss_pred HhCC
Confidence 4443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.7e-06 Score=105.73 Aligned_cols=339 Identities=12% Similarity=0.068 Sum_probs=205.1
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC------------CHHHHHHHHHHHHHHh
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT------------HPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~------------~~~VR~aA~~aL~~l~ 1527 (2629)
+|.++..+.+.+.. .....|..+....|.-..-.=.+.+|.|+++|++. ++++|..|.+||.+++
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 34444555443333 13445555555444311111257788888888753 2699999999999999
Q ss_pred hhcCch--------------hHHhHHHHHHhccCCCC--hh-----HH--------HHHHHHHhccccccCChh-hhhhH
Q 000049 1528 SVIKNP--------------EIASLVPTLLMGLTDPN--DH-----TK--------YSLDILLQTTFVNTVDAP-SLALL 1577 (2629)
Q Consensus 1528 ~~~~~~--------------~i~~lvp~Ll~~l~d~~--~~-----~r--------~al~~L~~~~~~~~~~~~-~l~~i 1577 (2629)
..-++. .+....+.+++.+..+. +. ++ .|+.+|.+..+....... .-...
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 765431 11222345555554431 00 21 455555542221110000 01234
Q ss_pred HHHHHHhhc-----------CCCHHHHHHHHHHHHHHhhhcCCCCcccch---HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1578 VPIVHRGLR-----------ERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1578 ~p~L~~~L~-----------d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~---l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
++.|.+.+. ..+..++..|+.++.+++.. +. ..... ....+|.|..+|.+++++++..|+.+|
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~--~~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG--DV-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT--CH-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC--Cc-ccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555555552 12467899999999999863 21 11111 245689999999999999999999999
Q ss_pred HHHHhhhCCC---C--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-C--hhHH--HhHhHHHHHhhcCCCh---
Q 000049 1644 GSLIRGMGEE---N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-G--TVYF--EHILPDIIRNCSHQRA--- 1710 (2629)
Q Consensus 1644 ~~l~~~~g~~---~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~-g--~~~l--~~llp~l~~~l~~~~~--- 1710 (2629)
+.++..-+++ . -...+|.|++.|....+...+..++.++..+.... + .... ...+|.+.+.+.+.+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 9997531111 1 13568888887655444556667777777776522 1 1122 4578888888876544
Q ss_pred -hhHHHHHHHHHHhhhh--hccchHhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh--ch-hh-hHHHHHh
Q 000049 1711 -SVRDGYLTLFKYLPRS--LGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT--TS-LP-LLLPAVE 1781 (2629)
Q Consensus 1711 -~vR~~a~~~l~~L~~~--~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~--~~-i~-~llp~l~ 1781 (2629)
.+++.++.++..++.. -+......+ ...+|.+...|.+.+..++..|..++..+...-.. .. ++ -.+|.|.
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 4899999999988863 122222222 24789999999999999999999999887631111 11 12 2688888
Q ss_pred hccCCCchHHHHHHHHHHHHHHH
Q 000049 1782 DGIFNDNWRIRQSSVELLGDLLF 1804 (2629)
Q Consensus 1782 ~~l~d~~~~vR~sa~~ll~~ll~ 1804 (2629)
+.+.+.+.+++..+...+..++.
T Consensus 428 ~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 428 NLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHc
Confidence 98988899999999999988864
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=107.76 Aligned_cols=195 Identities=14% Similarity=0.181 Sum_probs=143.0
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHH
Q 000049 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2629)
Q Consensus 1780 l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2629)
+.+.+.+++|+.|..+++-+..++....... .+++. ... +......+.....|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~~-----~~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQI-----YWRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CC-----TTSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HHH-----HHHHHHHHHHHhccchHH
Confidence 5678899999999999998888775421110 00000 000 111222333456899999
Q ss_pred HHHHHHHHHHHHHhcCh------hhHhhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc
Q 000049 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2629)
Q Consensus 1860 VR~aA~~~l~~l~~~~~------~~l~~~l~~Ll~~L~~~-L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1932 (2629)
|...+++++..++...+ ..+..++..+++.++.. +.+....+|..+..++..++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677888888865 7899999999999999888865443 244567777888
Q ss_pred CCCChhHHHHHHHHHHHHHHhhchhh--HHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000049 1933 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2629)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~--l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2629)
...+|.+|.+++.+|..++..+|... ..+.++.+++.+..++.|.++.||.+|..+++.++..+|..
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999998877643 35567788888899999999999999999999999998863
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-06 Score=106.74 Aligned_cols=315 Identities=13% Similarity=0.020 Sum_probs=197.7
Q ss_pred hcHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHHHHhccCchhHHH-----------HHHHHHHHHcCCCC-
Q 000049 1377 YGIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI-----------QMLPLLLVAFSDQV- 1433 (2629)
Q Consensus 1377 ~~i~~~L~~~l~~~~-----------~~~~R~~Al~al~~La~~~~~~~~~~v~-----------~ilp~ll~~l~D~~- 1433 (2629)
.+.+|.|.+++.... ++..|..|..++..++.+-++....... ...+.+++++..+.
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 366777777776432 3788999999999999877654332111 11233444443221
Q ss_pred -HH-----HHH-------HHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhcc-----------CChhhhHHHHHHHHHH
Q 000049 1434 -VA-----VRE-------AAECAARAMMSQLSAQ--GV--KLVLPSLLKGLED-----------KAWRTKQSSVQLLGAM 1485 (2629)
Q Consensus 1434 -~~-----VR~-------aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~-----------~~w~~r~~a~~~L~~l 1485 (2629)
.. ||+ .|..++..+... ... .+ ...+|.|+..|.. .+...+..++.+|..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 554 555566555322 111 11 2456666666631 2345688899999999
Q ss_pred HhhCchh--hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhc
Q 000049 1486 AYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 1563 (2629)
Q Consensus 1486 a~~~p~~--l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~ 1563 (2629)
+...+.. ........+|.|+.+|.+.+++|+..|+++|..++.. .++.. +.++-
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~------------------k~~I~----- 283 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNS------------------KKTLR----- 283 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHH------------------HHHHH-----
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHH------------------HHHHH-----
Confidence 9865432 1112456799999999999999999999999999742 11111 10000
Q ss_pred cccccCChhhhhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhhcCCCCcccch--HhhhHHHHHHHhcCCCH----HHH
Q 000049 1564 TFVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVR 1636 (2629)
Q Consensus 1564 ~~~~~~~~~~l~~i~p~L~~~-L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~L~d~~~----~VR 1636 (2629)
-...+|.|.+. +...+..+++.+..++.+++....+.+ ... ....+|.|..++.++.. +++
T Consensus 284 ----------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 284 ----------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp ----------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred ----------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 01234555554 344566788888888888876211100 111 24578888888886544 489
Q ss_pred HHHHHHHHHHHhh--hCCCC-----chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh--hHH--HhHhHHHHHhh
Q 000049 1637 SVAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNC 1705 (2629)
Q Consensus 1637 ~~A~~aL~~l~~~--~g~~~-----~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~--~~l--~~llp~l~~~l 1705 (2629)
..|+.+|..++.. .+++. -...+|.|++.|.+.. ...+..++.+|+.++..... ..+ ...+|.+.+.+
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998852 12221 1356888988887654 45788888899888742111 122 45689999999
Q ss_pred cCCChhhHHHHHHHHHHhhhhhcc
Q 000049 1706 SHQRASVRDGYLTLFKYLPRSLGV 1729 (2629)
Q Consensus 1706 ~~~~~~vR~~a~~~l~~L~~~~g~ 1729 (2629)
.+.+..+|+.+..++..|+..-+.
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred hCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999999999999999999876543
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=108.05 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=160.8
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhcc-------chHHHHHHHHHHhhc-------CC--CHHHHHHHHHHHHH
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-------EAPTLVSRLLDQLMK-------SD--KYGERRGAAFGLAG 1364 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~-------~~~~ll~~ll~~L~~-------~~--~~~~R~~Aa~~L~~ 1364 (2629)
+.+.|..-|-++.+++|..++-+|..+++..+. ...++.-.++..+.- ++ -..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 889999999999999999999999999987642 122555566655542 12 14799999999999
Q ss_pred HHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000049 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2629)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2629)
+ ..++.+ ..++..+...+... .|.+|++++.++.++.+.+. . +..+++.++.+++|++.+||..|..++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~DLL~----~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYLKEFVE----D-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTGGGCC----C-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHHHHHHH----H-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777766 25555555555555 79999999999999922222 2 678899999999999999999999888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhcc-CChhhhHHH-HHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLED-KAWRTKQSS-VQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w~~r~~a-~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~a 1522 (2629)
.-++ .+..+..++..+++.|.+ ++-..-.++ +.+|..+....+. ....+.++|.|...+.++-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 7776 455678888888888765 334444444 5577777765442 22346899999999999999999999999
Q ss_pred HHHHh
Q 000049 1523 LQQVG 1527 (2629)
Q Consensus 1523 L~~l~ 1527 (2629)
|..|.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 97775
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=102.34 Aligned_cols=192 Identities=16% Similarity=0.126 Sum_probs=142.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
...|.+...+.++++.+|..|..++..+...-... .+ ...+|.+++.|.++++.++..++.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34567777889999999999999999987533222 11 357899999999999999999999999999765544222
Q ss_pred h-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhh
Q 000049 1496 C-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1496 ~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2629)
. -.+.+|.++.+++++++.||..|+++|.+++..- +... +.+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 2 2468899999999999999999999999998531 1110 0000 1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc-chHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
...+|.+.+.+.+.+.++|..++.++++++.. .+.... -.-...++.+..++.++++.+|..|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 23567777777777889999999999999863 111111 1123578899999999999999999999998864
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=7e-06 Score=96.43 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=133.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHhcc---Cch
Q 000049 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFE 1415 (2629)
Q Consensus 1343 l~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l----~~~~~~~~R~~Al~al~~La~~~~~---~~~ 1415 (2629)
...|+. .+|..|..|...|...+...+...+ ..++.+.+++ .++ |..+-..++..+..+...+++ .+.
T Consensus 52 ~~~lfs-~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 52 MSQLFH-KDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHTC-SCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccch
Confidence 334443 4688888888887776654332222 2233333333 354 788888888888888776653 366
Q ss_pred hH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1416 PY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1416 ~~-v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
+| ...++|.++..+||+++.||+.+..++..+....++ ..+++.+.+++.+++||+|.+++..++.+....+-..
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~- 202 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP- 202 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-
Confidence 66 478999999999999999999999999888765443 4677888899999999999999999999876422222
Q ss_pred hhccchH---HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch
Q 000049 1495 QCLPKIV---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2629)
Q Consensus 1495 ~~L~~iv---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2629)
...+ |.+.+++.|++..||.+|..|+..+-...++.
T Consensus 203 ---~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 203 ---LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp ---GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ---cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 3356 88999999999999999999999888777743
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-06 Score=101.37 Aligned_cols=186 Identities=19% Similarity=0.168 Sum_probs=140.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH-
Q 000049 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV- 1418 (2629)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v- 1418 (2629)
.+..|.++++...|..|+.+|..++.+... ..+...+.++.|.+.+.+. ++..|..|+.+++.++.+.+......+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344444566788999999999998854321 2222346788899999887 799999999999998753322111111
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
...+|.++..+.++++.+|..+..++..+...-.... + ...+|.+++.+.+++..++..++.+|+.++...+....
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 1478999999999999999999999999875332221 1 45789999999999999999999999999987555432
Q ss_pred hh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
.. -.+.++.+.+++.+.+++||+.|+.+|..+++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 24688999999999999999999999999874
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=94.38 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=141.3
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCcc
Q 000049 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2629)
Q Consensus 1778 p~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~ 1857 (2629)
+.+...+++.+|+.|..+++.+...+...+ ..+...+ +-++.-+.....|.+
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-----------------------~~~~~~l-----Dll~kw~~lr~~d~N 100 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-----------------------RSLLSNS-----DLLLKWCTLRFFETN 100 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-----------------------HHHHHTH-----HHHHHHHHHHTTSCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------HHHHHHH-----HHHHHHHHHHHhCCC
Confidence 355667788999999999888877653210 1111111 112222222346889
Q ss_pred HHHHHHHHHHHHHHHhcChh---hHhhh-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC
Q 000049 1858 LSVRQAALHVWKTIVANTPK---TLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~---~l~~~-l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2629)
..|-..+++.+..++....+ .+.++ ...++|.++..+.++...+|..+...+..+....++ ..+.+.+..+++
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~k 177 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHc
Confidence 99999999999988764332 23333 578899999999999999999999998777765443 346677777899
Q ss_pred CCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI---PTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll---~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
+.++.+|.+++..++.++..+|... ...+ |.+.+++.|+|..||++|..++..++.+.|.....
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999888652 2345 88889999999999999999999999999986544
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-06 Score=102.54 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=137.5
Q ss_pred HHhhhccCChhhhHHHHHHHHHHHhhCchh-----hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-----
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-----l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2629)
+-+.|.+++|..|..+++-|..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999998877654432 2223556677788889999999999999999999876542
Q ss_pred ----hhHHhHHHHHHhc-cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1533 ----~~i~~lvp~Ll~~-l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
..+..++|.++.. +.++...++ .+++.+.. ++... .....+++.+..++...++.+|..+..++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~--~~~~~--~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILS--LCGLD--TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH--HHHTS--SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH--HHHhc--CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346778888865 788887776 45555432 11111 12234677888899999999999999999998887
Q ss_pred cCCCC-cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1607 VTEPK-DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1607 ~~~~~-~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
++... ...+.++.+++.+..++.|+++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 65421 234567778888999999999999999999999999999864
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00013 Score=76.78 Aligned_cols=215 Identities=20% Similarity=0.173 Sum_probs=163.0
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhc
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2629)
+.+++.++..|.|+-+.||..+...+..+....++-...++..++-.+.+++....-..-+.+++.++... ++.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-HHHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-HHHHH--h
Confidence 56789999999999999999988888888777777777888888888888877777677888888888643 34443 5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2629)
++|.+.....-. ++..|..-..+++.++...|.. ...++.-+...+.+++..=|-++..-+..+..+ +...+..
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-CccccCc
Confidence 777777776655 7889998889999998876643 345555666777888866666665544444322 2234567
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.+|.++..|.+++--+|..+++.|+.+|...|+ +..++...++-++|++..|......+|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 889999999999988999999999999987766 3445556667789999999999888888775
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00027 Score=78.40 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=160.7
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh----hhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcc
Q 000049 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2629)
Q Consensus 1737 ~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~----~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k 1812 (2629)
..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.++...|+++++.++...+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp----- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP----- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-----
Confidence 46677788889999999999999999998873 344677899999999999999999999999999984321
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHH
Q 000049 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2629)
Q Consensus 1813 ~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~ 1892 (2629)
++++.+..+..++.....+.+...+..|.+.++.+-. ....+.++..+..
T Consensus 108 ------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~s 157 (265)
T 3b2a_A 108 ------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINE 157 (265)
T ss_dssp ------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHH
Confidence 1122333455555555567788899999999998821 2345677888888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHH
Q 000049 1893 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2629)
Q Consensus 1893 ~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2629)
.+.|.+..++.+|.+++.++....++. ++..++.-+...++.+|+.++.-+...+.+++..--.+...+-+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 889999999999999999998877654 5666666677778888999999999988887654322333333344444444
Q ss_pred HHh-cCCcHHHHHHHHHHH
Q 000049 1972 TAL-CDSILEVRESAGLAF 1989 (2629)
Q Consensus 1972 ~~L-~d~d~~VR~~A~~al 1989 (2629)
... -...|.+|..|...-
T Consensus 238 ~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HGGGCSSCHHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHH
Confidence 444 456788888775433
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=89.47 Aligned_cols=135 Identities=18% Similarity=0.157 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhh
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGL 1467 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v-~~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L 1467 (2629)
..|..|+..|..+++.... -..++ ...+|.++. ++.++++.||..|..+++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 5677788877777764331 11122 246888999 999999999999999999998653322 12 35789999999
Q ss_pred cc-CChhhhHHHHHHHHHHHhhCchhhhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1468 ~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
.+ .+..++..++.+|+.++.+.+....... .+.+|.|..+++++++.||..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 85 4678899999999999987665433222 36899999999999999999999999999865
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00015 Score=91.05 Aligned_cols=256 Identities=11% Similarity=0.028 Sum_probs=168.8
Q ss_pred hhHHHHHHHHHHHhhCchhhhhh--ccchHHHHhhhhc-----------CCCHHHHHHHHHHHHHHhhhcCchhHHhHHH
Q 000049 1474 TKQSSVQLLGAMAYCAPQQLSQC--LPKIVPKLTEVLT-----------DTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2629)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~--L~~ivp~L~~~L~-----------D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2629)
....|+.+|+.++.. ++ .+.. =.+.++.|..++. ..++.+|..|+++|..++..-. ..
T Consensus 48 ~~~~A~~aL~nls~d-~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~--~~----- 118 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--AN----- 118 (354)
T ss_dssp THHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH--HH-----
T ss_pred HHHHHHHHHHHHcCC-HH-HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH--HH-----
Confidence 344677888888865 22 1211 1356677777763 1247899999999999974311 10
Q ss_pred HHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch--Hh
Q 000049 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IG 1618 (2629)
Q Consensus 1541 ~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~ 1618 (2629)
+..+. ....++|.|.+.+.+.+.+++..++.++.+++.. .+. +.... -.
T Consensus 119 -------------k~~i~--------------~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~-~~k~~i~~~ 169 (354)
T 3nmw_A 119 -------------KATLC--------------SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADV-NSKKTLREV 169 (354)
T ss_dssp -------------HHHHH--------------HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCH-HHHHHHHHT
T ss_pred -------------HHHHH--------------HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCH-HHHHHHHHC
Confidence 00000 0123466777777777788888899999888753 111 11111 12
Q ss_pred hhHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhCC---CC--chhhHHHHHHHhccCCCh---HHHHHHHHHHHHHHHh-
Q 000049 1619 LLLPEVKKV-LVDPIPEVRSVAARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA- 1688 (2629)
Q Consensus 1619 ~ll~~L~~~-L~d~~~~VR~~A~~aL~~l~~~~g~---~~--~~~ll~~Ll~~L~~~~~~---~~R~~a~~~L~~i~~~- 1688 (2629)
..+|.|..+ +...++.+++.|+.++..++....+ .. ....+|.|.+.+.+..+. ..+..++.+|..+...
T Consensus 170 G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 467778886 4567889999999999999873211 11 356788898888765432 3566677777777642
Q ss_pred -hChh---HH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH--HhHHHHHHhhcCCCChhHHHHHHHH
Q 000049 1689 -LGTV---YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGA 1760 (2629)
Q Consensus 1689 -~g~~---~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~a 1760 (2629)
.+.+ .+ ...+|.+++.+.+.+..+++.++.++..++..... ....+ ...+|++...+...++.+|+.|..+
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a 328 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 1222 12 34689999999999999999999999999743222 22233 2478999999999999999999999
Q ss_pred HHHHHHHh
Q 000049 1761 GHVLVEHY 1768 (2629)
Q Consensus 1761 l~~iv~~~ 1768 (2629)
+..+...-
T Consensus 329 L~nL~~~~ 336 (354)
T 3nmw_A 329 LRNLMANR 336 (354)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 98887653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.04 E-value=7.7e-05 Score=93.56 Aligned_cols=218 Identities=16% Similarity=0.105 Sum_probs=155.4
Q ss_pred cHHHHHHHHHhhhhhHhhhc---cc---hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHH
Q 000049 1313 SEAVQRAVSSCLSPLMQSMQ---DE---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 1383 (2629)
Q Consensus 1313 ~~~Vq~~~~~~L~~l~~~~~---~~---~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L 1383 (2629)
++++|..++.+|..+...-. .. ....++.|+..|. +++...+..|+.+|..++.+-. ...+...+.++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 46799999999988863321 11 1345777887775 4557899999999999986411 1233334678888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHh--hcHHh
Q 000049 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQ--LSAQG 1455 (2629)
Q Consensus 1384 ~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~----~VR~aa~~al~~i~~~--l~~~~ 1455 (2629)
.+.+....+...++.|+.++..|+....+.-...+ ...+|.|...+.++++ .+++.+..++..+... -.+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88653333678888888899888863322112222 2588999999876544 4888888888887652 12222
Q ss_pred ---H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
+ ...+|.+++.|.+.+..++..|+.+|..++...+++...-. ...+|.|.+++.+.++++|+.|+.+|..++..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 24689999999999999999999999999976555432222 46789999999999999999999999999976
Q ss_pred cC
Q 000049 1530 IK 1531 (2629)
Q Consensus 1530 ~~ 1531 (2629)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 33
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.9e-05 Score=91.37 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHH
Q 000049 1353 GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2629)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~-~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~ 1428 (2629)
..|..|...|..++..... ..+...+.++.+.. .+.+. ++..|..|+.+++.++..-+. ....+. ..+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 4677777778777764421 11222355677777 88776 799999999999999865332 223333 588999998
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc-cchHH
Q 000049 1429 FS-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2629)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp 1502 (2629)
+. +++..+|..|..++..+....++. .+ ...+|.|+..|.+++..++..++.+|+.++.+.++...... .+++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 568999999999999887654332 22 35789999999999999999999999999987665432221 47899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
.|+.+|.++++.||+.|+.+|++++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0054 Score=68.34 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=154.7
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--hcHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ--LSAQ 1454 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~-~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~--l~~~ 1454 (2629)
..+..+...+.++ |...+..++++++.+....++.+. ..+..++|.++..+.+++..|--.|..+++.+... +++.
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3556677777666 899999999999999998764343 45678999999999999999999999999999885 5677
Q ss_pred hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchh
Q 000049 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2629)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2629)
++..+...+.+-+.+++--.+..+.+.+|.+ .+ ....+.++..+..++...+++|+.+|..++..++..-++++
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 8888888888888888777777888888876 11 12236677778888888899999999999999987655443
Q ss_pred H-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000049 1535 I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2629)
Q Consensus 1535 i-~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2629)
+ ..++.- +...++..++.++..|.+.+..+.+. .-++.+
T Consensus 186 i~~~I~~e---------------------------------------I~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~ 225 (265)
T 3b2a_A 186 HLTLILDE---------------------------------------IPSLLQNDNEFIVELALDVLEKALSF-PLLENV 225 (265)
T ss_dssp CGGGTTTT---------------------------------------HHHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCC
T ss_pred HHHHHHHH---------------------------------------HHHHHcCCCHHHHHHHHHHHHHHHcC-cccHhH
Confidence 2 222222 22334445567777777777777654 222333
Q ss_pred cchHhhhHHHHHHHh-cCCCHHHHHHHHHH
Q 000049 1614 IPYIGLLLPEVKKVL-VDPIPEVRSVAARA 1642 (2629)
Q Consensus 1614 ~~~l~~ll~~L~~~L-~d~~~~VR~~A~~a 1642 (2629)
.+-+-.+......+. -...|.+|..|-..
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 333444444444444 45667777776543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0016 Score=80.44 Aligned_cols=269 Identities=12% Similarity=0.109 Sum_probs=144.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 000049 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2629)
Q Consensus 1346 L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~l 1425 (2629)
+..+++...|+.....+..+.+. ..+.+ -+...+.+-++++ |+..|-.|+.+++.+. .. ..+..+.+.+
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~-~~e~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~---~~---~m~~~l~~~l 144 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCI-AEDVI---IVTSSLTKDMTGK-EDSYRGPAVRALCQIT---DS---TMLQAIERYM 144 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTT-SSCGG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHC---CT---TTHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCC-HHHHH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCC---CH---HHHHHHHHHH
Confidence 44567789999988888887765 33333 4677888888887 7899987777666653 22 3455678888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
-+++.|.++.||.+|.-+...+... .++.++..++.+-+.+.+.+..+...|+.+|..+....+.. +..+++.+.
T Consensus 145 k~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a----~~kLv~~l~ 219 (355)
T 3tjz_B 145 KQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA----VSKMISKFT 219 (355)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH----HHHHHHHHh
Confidence 9999999999999998887777644 45567888888888899999888888888888887654322 233444433
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcC-c-hh-HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHH
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIK-N-PE-IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~-~-~~-i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2629)
+. .-.++..+ +.-+..+..... + +. -..+++.+...+.+.++.+- +|..++... .+ .....+...++.+
T Consensus 220 ~~-~l~~~~~q---~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l--~~-~~~~~~~~a~~~L 292 (355)
T 3tjz_B 220 RH-GLKSPFAY---CMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL--PG-CSAKELAPAVSVL 292 (355)
T ss_dssp SS-CCSCHHHH---HHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------CCCTH
T ss_pred cC-CCcChHHH---HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--cC-CCHHHHHHHHHHH
Confidence 31 11133333 333333333332 2 22 36788888888888777776 677776542 11 1222334445666
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1582 HRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1582 ~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
...+.++++++|-.|...+..+... .|..+.. .-.-+..++.|++..++..|+..+
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~--~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMK--HPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHH--CcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 6777778889999998888877763 3334333 334456677788877766665544
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00026 Score=87.40 Aligned_cols=279 Identities=14% Similarity=0.120 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh
Q 000049 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2629)
...++..+++.+.+++...|....-.+..+... .+.++ -+...+.+-++++++-+|..+..+++.+.. .+.
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-------~~m 136 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-------STM 136 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------TTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-------HHH
Confidence 345667778889999999999988888776655 34444 566778888889999999999999887632 224
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc--hhHHHHHHHHHHhhhccCcCccc
Q 000049 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHI 2040 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~~~~~ilp~L 2040 (2629)
++.+.+.+.+++.|.++-||..|+-+...++.. .++.+..+++.+-+.+.+.+. ...|+..+.++... ....+..+
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kL 214 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKM 214 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHH
Confidence 567888899999999999999999888887754 344556677777777766542 24566666665532 22244556
Q ss_pred chhhhcCCCc-hh-HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Q 000049 2041 LPKLVHLPLS-AF-NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2629)
Q Consensus 2041 ip~L~~~~~~-~~-~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll 2118 (2629)
++.+....+. .+ ....+..++.....+-...-..+++.+...++..++.|.-.+..++-.+-. .+..........+.
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~ 293 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQ 293 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHH
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHH
Confidence 6666554331 22 222333222211111112235566677777788888887666665543322 11222223334444
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000049 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2629)
Q Consensus 2119 ~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL 2177 (2629)
..+.+.++.+|..|+..+..+....+.-+..+ -..+..++.|+|..+..-|..+|
T Consensus 294 ~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 294 LFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 45567888999999999999887666554443 34456677899988876665543
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.34 E-value=5.6e-05 Score=80.61 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=72.2
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
..++.+...|.+++|.+|..++..|+.+.. +. ++.|...++|+++.||..|+++|+.++. +
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----------~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----~---- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD----------EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD----E---- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS----------TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----H----
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----------hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----H----
Confidence 345555666666666666666666554321 11 3666666777777777777777766542 1
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH
Q 000049 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2629)
..++.|...+.|.++.+|..++.+++.+..
T Consensus 73 --------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------------ 102 (131)
T 1te4_A 73 --------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ 102 (131)
T ss_dssp --------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------
T ss_pred --------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------
Confidence 123444455556677888888888887642
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
+..++.|...+.|+++.||..|..+|+.
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2357778888888889999998888764
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.59 Score=64.28 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=59.4
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchH-HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch---
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--- 1533 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--- 1533 (2629)
.++| +++.|.+.+...|.+||.+|+.++......-.-.-.+++ +.+..++.|++..||.+|..+|++++..-+..
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 556788889999999999999998642221111123444 45667899999999999999999998653311
Q ss_pred hH--HhHHHHHHhcc
Q 000049 1534 EI--ASLVPTLLMGL 1546 (2629)
Q Consensus 1534 ~i--~~lvp~Ll~~l 1546 (2629)
++ ..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 11 34566665554
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.48 Score=62.01 Aligned_cols=211 Identities=17% Similarity=0.137 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcc-
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-RNSAKRREGALLAFECLCEKLGR- 1412 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~-~~~~~~R~~Al~al~~La~~~~~- 1412 (2629)
..+.++.|.+.+.++.-.+.|+.|..+|..+.+........ .-++.+...+++ ..|...-..++..+..+...-+.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 46778888888888777789999999999998766543332 224444444433 23444444455544333221110
Q ss_pred ---------------CchhHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H---HhhHHHHHhhhc
Q 000049 1413 ---------------LFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V---KLVLPSLLKGLE 1468 (2629)
Q Consensus 1413 ---------------~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v---~~ilp~Ll~~L~ 1468 (2629)
.+...+ .+-++.++.++...+..+|..+...+..+...-+... + ..-+|.|++.|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 011111 1468889999999999999999999999887554422 2 246788999999
Q ss_pred cCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCCCH----HHHHHHHHHHHHHhhhcC-c-hhH--HhHH
Q 000049 1469 DKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-N-PEI--ASLV 1539 (2629)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~~-~-~~i--~~lv 1539 (2629)
++.-..|..++.+|..++.+.++.. .-.+.+.++.++.++..... .|..-|...|..+.+.-. | ..+ ...+
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 9888889999999999998776532 22356778888888766443 677778888888876521 1 122 2345
Q ss_pred HHHHhccC
Q 000049 1540 PTLLMGLT 1547 (2629)
Q Consensus 1540 p~Ll~~l~ 1547 (2629)
|.|...+.
T Consensus 257 ~~L~~LL~ 264 (651)
T 3grl_A 257 QRMKPWFE 264 (651)
T ss_dssp GGGGGGGC
T ss_pred HHHHHHhC
Confidence 55555554
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.05 E-value=8.9e-05 Score=86.94 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=110.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Q 000049 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 1423 (2629)
Q Consensus 1344 ~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp 1423 (2629)
..+...+++.+|..++..| ++. .+...++++ ++.+|..+... ++. +
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~-------L~~----------~ 101 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYR-------LPR----------E 101 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTT-------SCS----------G
T ss_pred HHHhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHH-------CCH----------H
Confidence 3444556678888877743 211 234445565 78888777653 221 2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHH
Q 000049 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2629)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~ 1503 (2629)
.+...++|+++.||.++...+ +.. .+...+.+++|.+|..+..-+ + + +.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~ 150 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL-------PLE-------QLEQMAADRDYLVRAYVVQRI-------P-------P---GR 150 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CTG-------GGGGGTTCSSHHHHHHHHHHS-------C-------G---GG
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CHH-------HHHHHHcCCCHHHHHHHHHhc-------C-------H---HH
Confidence 345567888888888765532 211 123335677888887766521 1 1 12
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHH
Q 000049 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2629)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2629)
+..+++|+++.||.++...+ .. +.+...+.|++..+|. +...+ . .+.+.
T Consensus 151 l~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l---------~-------~~~L~ 200 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRL---------R-------GDDLL 200 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHC---------C-------GGGGG
T ss_pred HHHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhC---------C-------HHHHH
Confidence 44567888888888887651 11 2344566788888773 33221 0 13445
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1583 ~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
..+.|.+|.||..+...++ .+.+..+ .|+++.||..+...||
T Consensus 201 ~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 201 ELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 5678888888888776532 1334444 8888888888876654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00065 Score=72.24 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=87.2
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
.-.+.+...++++ ++.+|..|+.+++.+ +. + . ++.++..+.|+++.||..+..++..+. -.
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~-------~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ-------DE 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC-------SH
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC-------CH
Confidence 3455677777776 788888887766543 22 1 1 477888899999999999988887663 24
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2629)
..+|.++..+.+++|.+|..++.+|+.+.. +..+|.|...++|+++.||..|..+|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 567888888999999999999999998752 3467888889999999999999999865
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00027 Score=82.83 Aligned_cols=185 Identities=16% Similarity=0.078 Sum_probs=122.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHHHh
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2629)
.+++|+++.||..+...+. + ..+...+.|++..+|. +...+ . .+.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------~------~~l~~L~~D~~~~VR~~aA~~L---------~-------~~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------V------EALTPLIRDSDEVVRRAVAYRL---------P-------REQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------G------GGGGGGTTCSSHHHHHHHHTTS---------C-------SGGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------H------HHHHHHccCcCHHHHHHHHHHC---------C-------HHHHHHH
Confidence 4579999999999988541 1 1355667899999984 33221 1 1345667
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH
Q 000049 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2629)
Q Consensus 1585 L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~ 1664 (2629)
++|.++.||..+...+ .. +.+..++.|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~l-------~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL------------EQLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT------------GGGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHhC-------CH------------HHHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 8899999999887632 11 1234557899999999998732 211 223
Q ss_pred HhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHh
Q 000049 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2629)
Q Consensus 1665 ~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~ 1744 (2629)
.+.++.+..+|..++.. ++.. .+...+.+++|.||..+...+ +. +.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~~----------~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------RG----------DDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------CG----------GGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHH
Confidence 34456667788877664 2322 233566889999999888642 11 34566
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHH
Q 000049 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2629)
Q Consensus 1745 ~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~ 1800 (2629)
.+.|++..||..+...+. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 688999999998877643 2344445 8999999998765443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.5 Score=58.94 Aligned_cols=297 Identities=12% Similarity=0.098 Sum_probs=181.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000049 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~ 2319 (2629)
.|+...+.-|+..|....+..+ .....-+..++.+..|. +..+|..|+..|..+++. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4678899999999999987765 22233445567777775 788999999998887753 57999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCc-ChHHHHHHHHHHHH
Q 000049 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKD 2398 (2629)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~ 2398 (2629)
+.|+..+..-+...-.+|-.+...+| ...+..++..+..+++.+|+.++..|..-+...+... ....-.-|...+..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888888888899888877654 3456666777666789999999999998888776654 45555667788888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCChhH---HHHHHHHHHhh---cCCCCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000049 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQ---LADLLQELLNL---ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2629)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---~~~~l~~ll~~---~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2629)
.+.|-...--.....+|+.+-..-.... +.+++.+.... ....+.......+.++...+-.....+-...+..-
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 8888766655666677766544333222 33333332211 12223222223444555444333322222223222
Q ss_pred HHHHHHhhhcCCC-----hhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCH-----------------
Q 000049 2473 ILDRLKSSLKDEK-----FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS----------------- 2530 (2629)
Q Consensus 2473 i~~~l~~~~~~~~-----~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~----------------- 2530 (2629)
+...+...+..=. +..+-.-..+++.+..+++... .....+..+...|..-+.-...
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e-~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDME-KLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccc-hHHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 3333333332211 1245556667777666665221 0112233333344433321111
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000049 2531 EVRRRALSALKSVAKANPSAI 2551 (2629)
Q Consensus 2531 ~vr~~al~~l~~~a~~~~~~v 2551 (2629)
.--...++++.+++++.|+..
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 122678899999999999765
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.15 Score=66.68 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhcChhhhhhch-----------hhhhHHHHHHhcCCCCHhHHHHHHHHH
Q 000049 2230 LLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFV-----------IPITGPLIRIIGDRFPWQVKSAILSTL 2296 (2629)
Q Consensus 2230 ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v-----------~~i~~~Li~~l~~~~~~~vk~~al~~L 2296 (2629)
+++.+++-+... ...++..|+.+++++++..+ ..+.++ +.++..|+..+.++...++|.+++.++
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566656554 67889999999999986543 223222 223333445566667789999999999
Q ss_pred HHHHH
Q 000049 2297 SIIIR 2301 (2629)
Q Consensus 2297 ~~L~~ 2301 (2629)
..++.
T Consensus 390 ~ay~~ 394 (651)
T 3grl_A 390 QCFLY 394 (651)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87765
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.013 Score=66.30 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=125.5
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2345 ~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
+....|+..|++.+..-+.+.+.- .++-..+.... ..+.++.+...+.+++.+.+|-.|+..||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~~-~~~a~~~~~~~-------~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKEE-EQRALTDYKSN-------DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CHH-HHHHHHHHHHS-------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHhC-------CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 456778888877765433222221 12222333321 2567778888888899999999999999988 3 32
Q ss_pred hHHHHHHHHHHh-hcCCCCchhhHhHHHHHHHHHh-hCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhh
Q 000049 2425 GQLADLLQELLN-LASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2629)
Q Consensus 2425 ~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~l~-~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2629)
.++-++++ . ...++.|.++.....++..++. ..|+. .++.+..-+.++++.+|..|..+..-....
T Consensus 102 ~~~L~~ir---~~va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~ 169 (240)
T 3l9t_A 102 KEILIFMR---DEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIWTNR 169 (240)
T ss_dssp HHHHHHHH---HTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred HHHHHHHH---HHhCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence 33333333 4 2457789888877778888875 66653 345566778899999999998886432111
Q ss_pred hhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHH
Q 000049 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2629)
Q Consensus 2503 ~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~ 2557 (2629)
|....+...+++.+-....|++.=||+.....|+-+++.+|+.|+.++..
T Consensus 170 -----~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 170 -----PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp -----TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred -----chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 21223456677777777889999999999999999999999999887653
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.014 Score=67.94 Aligned_cols=191 Identities=16% Similarity=0.096 Sum_probs=113.9
Q ss_pred hhHHHHHhhhccCCh--hhhHHHHHHHHHHHhhCchhhh-hhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc-Cch
Q 000049 1458 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNP 1533 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w--~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~-~~~ 1533 (2629)
..+|.+++.|.+++. ..+..++..+..+++..+..-. -.-.+.+|.|+++|...++++|..|+++|..++..- .+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 457888888888777 7777788888888876543221 112456799999999999999999999999998631 122
Q ss_pred -hH--HhHHHHHHhccC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhh-------c---------CCCHHH
Q 000049 1534 -EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAET 1592 (2629)
Q Consensus 1534 -~i--~~lvp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L-------~---------d~~~~v 1592 (2629)
.+ ..-+|.|++.+. .++..++ .+..+|..-...+.........-+|.|...+ . ..+.++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22 457888888886 4566665 3433332211111111112223345544422 1 125689
Q ss_pred HHHHHHHHHHHhhhcCC-CCcccchHhhhHHHHHHHhc----C--CCHHHHHHHHHHHHHHHhh
Q 000049 1593 KKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV----D--PIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1593 r~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~----d--~~~~VR~~A~~aL~~l~~~ 1649 (2629)
+..+..++.+++..-.+ .+.+.. .+.+++.|..+++ + .+...++-+..+|..+...
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999763101 011211 1234444444433 2 3456777777777766543
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.03 Score=63.52 Aligned_cols=143 Identities=18% Similarity=0.165 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
+.+..+...|.+++.+.+|..|+..|+.+ . .. ..+++.+...+.++++|.+|+.+..+|+.++...+.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~--~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KD--KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TS--HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----Cc--HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 44456777788888789999999977766 2 22 267888888444344899999999999998864332
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
...++.+.....|++..||..|.+..+....... ......++|.+-....++++.+|++....|..++...|+-+
T Consensus 138 --e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 138 --KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 1256778888999999999999888754222111 11235677777777788999999999999999988776643
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=95.42 E-value=3.1 Score=52.04 Aligned_cols=269 Identities=16% Similarity=0.154 Sum_probs=149.1
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHH
Q 000049 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2629)
Q Consensus 2115 ~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~ 2194 (2629)
..++...+. +...++.|+..+..+++..+ ..-...+..++.+++|.|..||..|...|..+++. +.++.+..
T Consensus 32 ~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaD 103 (507)
T 3u0r_A 32 QVILDGVKG-GTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVAD 103 (507)
T ss_dssp HHHHHGGGS-CHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHH
Confidence 334444443 47888888888888887543 34456777888888888888888888888887765 55666666
Q ss_pred HHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhh-h
Q 000049 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI-T 2273 (2629)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i-~ 2273 (2629)
.+.|.+......+...-... .+.-+ .......+..+...+.++++.+|+.++..|..-+...+.+.+.+-+..+ +
T Consensus 104 vL~QlLqtdd~~E~~~V~~s--L~sll--k~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 104 ILTQLLQTDDSAEFNLVNNA--LLSIF--KMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HHHHHTTCCCHHHHHHHHHH--HHHHH--HHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHH--HHHHH--hcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 66666654322111100000 00000 0112234455566666788899999888888877777755555444333 3
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC--CccCchHHHHHHHHHH--c----CCCCHHHHHHHHHHHHHHHhc--
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI--ALKPFLPQLQTTFIKC--L----QDSTRTVRSSAALALGKLSAL-- 2343 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~--~l~p~lp~L~~~~~k~--L----~d~~~~vR~~Aa~aLg~l~~~-- 2343 (2629)
..+-.++.|- ..+--...+. ++..+.. .. +...+|...+..- | ...+.+.-.....|+-.-.-+
T Consensus 180 ~~ikK~L~DV-T~~EF~L~m~----lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 180 TESKKVLEDV-TGEEFVLFMK----ILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHTTSC-CHHHHHHHHH----HHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHhccc-cHHHHHHHHH----HHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 3344555443 2222122222 2222211 11 1123444444432 1 112444444555555543221
Q ss_pred -cCChhHHHHHHHHh----hhcC-C----HHHHHHHHHHHHHHHhhcC-CCcChHHHHHHHHHHHHhhc
Q 000049 2344 -STRVDPLVGDLLSS----LQVS-D----AGIREAILTALKGVLKHAG-KSVSSAVKIRVYSVLKDLVY 2401 (2629)
Q Consensus 2344 -~~~~~~ll~~Ll~~----l~~~-d----~~vr~~~l~AL~~vi~~~g-~~~~~~~~~~i~~~L~~~l~ 2401 (2629)
+.+-.+++..++.. +..- + .+.|-..++++.++...+| ..-.....+.|++.|...+=
T Consensus 254 ~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 254 KNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322 (507)
T ss_dssp TTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSC
T ss_pred cCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCC
Confidence 22334555555444 3321 1 2378899999999999888 44446788888888876554
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.3 Score=56.67 Aligned_cols=175 Identities=10% Similarity=0.020 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHhhhC--cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHH
Q 000049 1353 GERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2629)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~ 1428 (2629)
..+..|+..|..++.+.. ...+...+.++.|.+.+.+. +...|+.|..++..++..-.+ -...+. ..+|.++..
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~-nk~~I~~~GaI~~Lv~l 102 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDND-NKLEVAELNGVPRLLQV 102 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCHHHHHHH
Confidence 344444455554443221 11222235678888888876 789999999999999853221 112222 478889998
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhc--HHhHHhhHHHHHhhhc-------c---------CChhhhHHHHHHHHHHHhhC
Q 000049 1429 FS-DQVVAVREAAECAARAMMSQLS--AQGVKLVLPSLLKGLE-------D---------KAWRTKQSSVQLLGAMAYCA 1489 (2629)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp~Ll~~L~-------~---------~~w~~r~~a~~~L~~la~~~ 1489 (2629)
+. .++..+++.+..++..+...-. ..-++.-+|.|.+.+. + .+..++..+..+|..++...
T Consensus 103 L~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~ 182 (233)
T 3tt9_A 103 LKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182 (233)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC
T ss_pred HccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC
Confidence 87 4688999999888888764321 1223445677765432 0 13367888889999988644
Q ss_pred ch---hhhhhccchHHHHhhhhcC------CCHHHHHHHHHHHHHHhhhc
Q 000049 1490 PQ---QLSQCLPKIVPKLTEVLTD------THPKVQSAGQTALQQVGSVI 1530 (2629)
Q Consensus 1490 p~---~l~~~L~~ivp~L~~~L~D------~~~~VR~aA~~aL~~l~~~~ 1530 (2629)
++ .+.. -+.+++.|+.+++. .+.+.++.|+.+|.++...+
T Consensus 183 ~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 183 ADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 33 2322 35677888777653 35578889999999887543
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=8.5 Score=47.65 Aligned_cols=131 Identities=14% Similarity=0.124 Sum_probs=79.8
Q ss_pred HHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhc--CC----------------CCc---------hhhHHHHHHHHhh
Q 000049 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GP----------------ANT---------TVVVDILASVVSA 2524 (2629)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~~----------------~~~---------~~l~~~l~~l~~~ 2524 (2629)
.+-..+.....+++..+|-+++..+-.++..+.+. ++ .+. ..-..++..++..
T Consensus 154 ~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~ 233 (386)
T 3o2t_A 154 AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKF 233 (386)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34455556667778888888888888777655322 11 011 1122355666666
Q ss_pred cCC--CCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhh--------hcCCcchhhhhHHHHHHHHhccccCchhH
Q 000049 2525 LHD--DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC--------LKDGSTPVRLAAERCAVHAFQLTRGSEYI 2594 (2629)
Q Consensus 2525 l~~--~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~--------~~~~~~~vk~aae~a~~~l~~~~~~~~~~ 2594 (2629)
+.+ .++-.=.+++.+|..+++..|... ..++|.+..- .+-..-.|+...-..|+++++-+...+..
T Consensus 234 l~~~~iss~~l~a~lnsLa~Iak~RP~~~----~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~ 309 (386)
T 3o2t_A 234 MVHPAISSINLTTALGSLANIARQRPMFM----SEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQ 309 (386)
T ss_dssp TTC--CCHHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGH
T ss_pred HcccccccHHHHHHHHHHHHHHHhcHHHH----HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhH
Confidence 553 233344678899999999988753 3333333221 01112236777778999999988877777
Q ss_pred HHHHHHhhhhhh
Q 000049 2595 QGAQKFITGLDA 2606 (2629)
Q Consensus 2595 ~~~~~~l~~~~~ 2606 (2629)
..+..+|+.+-+
T Consensus 310 ~~I~~~L~~Lg~ 321 (386)
T 3o2t_A 310 AQITTLLVDLGT 321 (386)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHcc
Confidence 788888755543
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.92 E-value=16 Score=42.71 Aligned_cols=143 Identities=14% Similarity=0.132 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChh
Q 000049 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168 (2629)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~ 2168 (2629)
+.+-....-...++..-+...++.+++.++....+.+..+|...+..+...|... ..+.+.+++.|..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 3444444444454444345668899999999888888999999999988888542 356778899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhh--hhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHH
Q 000049 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK--ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 2246 (2629)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~--~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r 2246 (2629)
|.+.+..+.+.+.+..- +......... ....| ..+..+-..++..+.+++..+|
T Consensus 106 V~K~~I~~~~~iY~~~l-----------~~i~~~~~~~~~~~~~W-------------~~m~~lK~~Il~~~~s~n~gvk 161 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNGL-----------QYLCSLMEPGDSAEQAW-------------NILSLIKAQILDMIDNENDGIR 161 (257)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHTTSSSCCHHHHHHH-------------HHHHHHHHHHHHGGGSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHhcCCCCcchHHHHH-------------HHHHHHHHHHHHHHccCCcchH
Confidence 99999988888754321 1111110000 00000 0111222334455667788899
Q ss_pred HHHHHHHHHHHhh
Q 000049 2247 EQAALGLGELIEV 2259 (2629)
Q Consensus 2247 ~~aa~~L~~l~~~ 2259 (2629)
..+.+.+..++..
T Consensus 162 l~~iKF~e~vIl~ 174 (257)
T 3gs3_A 162 TNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888843
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=91.35 E-value=3.9 Score=58.87 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHHHHhh-------cHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHH
Q 000049 1432 QVVAVREAAECAARAMMSQL-------SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l-------~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L 1504 (2629)
.++.+|+.+..+++.++... +.+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 45778888888887776632 222345566666666777777778888999998864 3445555
Q ss_pred hhhhc-------CCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCC--ChhHH-HHHHHHHhccccccCChhhh
Q 000049 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~~r-~al~~L~~~~~~~~~~~~~l 1574 (2629)
.+++. +...+||.+|++||..++... | +.+-+.+++...|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55553 225689999999999998532 2 22334455555333 34567 566665431 1223
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
..+..+....-.|++..|+......+.+++..
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 22333333333557778888777777777653
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=90.16 E-value=13 Score=41.36 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHH
Q 000049 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2629)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll 1663 (2629)
...-....+....+... ..-.+.||+.+++|.+..++-.. ...+|..|+..++.++...|..+ .+.++..+.
T Consensus 60 l~~L~~lm~~~~ALl~N--~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 60 AEVLKTCIALYFSLIKN--KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 34334444555555542 22357899999999999987532 22799999999999999998753 244555555
Q ss_pred HHhccC-CChHHHHHHHHHHHHHHHhhChhHHHhH-hHHHH
Q 000049 1664 DALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHI-LPDII 1702 (2629)
Q Consensus 1664 ~~L~~~-~~~~~R~~a~~~L~~i~~~~g~~~l~~l-lp~l~ 1702 (2629)
+.+.++ .+.....||..++.. +|.+..+.+ +|.+-
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l~ 174 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHAE 174 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCHH
Confidence 555554 345566788777764 455555443 35443
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=89.11 E-value=13 Score=51.19 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHhhcC
Q 000049 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD---SDSTTVAAAWEALSRVVASVP 2185 (2629)
Q Consensus 2110 ~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d---~d~~V~~~a~~aL~~l~~~~~ 2185 (2629)
+..++|.+..++-+.+..+...+..++..++.-.|....-.+|.++..+...++. ....-..++..+|..++..+.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 4456677777788888888888999999998766644445567888888888876 444445667777777765443
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=52 Score=40.69 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHc
Q 000049 2243 AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322 (2629)
Q Consensus 2243 ~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L 2322 (2629)
.+.|...+.-+.+++-+..+.-+ +++++.++....+. +.++|..+.+++.+.+.+- ..+++.+.+++...+
T Consensus 39 ~~~Kl~~L~q~~EL~l~~dpsLl----~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL 109 (386)
T 3o2t_A 39 NDSKITVLKQVQELIINKDPTLL----DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLL 109 (386)
T ss_dssp STHHHHHHHHHHHHHHTTCGGGG----GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 35677788888887655444433 45555667776665 7899999999999988753 346788899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-------ccCCh----h-------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC--C
Q 000049 2323 QDSTRTVRSSAALALGKLSA-------LSTRV----D-------PLVGDLLSSLQVSDAGIREAILTALKGVLKHAG--K 2382 (2629)
Q Consensus 2323 ~d~~~~vR~~Aa~aLg~l~~-------~~~~~----~-------~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g--~ 2382 (2629)
.|.+..|-..+..|.+.+-. ..+.. . .+-..++..+...+.++|..+++.+..+|.... .
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~ 189 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRM 189 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCC
Confidence 99999999999998888721 12322 1 222345555566679999999999999884211 0
Q ss_pred -----------Cc----------------ChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000049 2383 -----------SV----------------SSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2629)
Q Consensus 2383 -----------~~----------------~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2629)
.+ .+.-...+++.|...+.++ +...-.+...||+.+++.-|. ....+++.
T Consensus 190 ~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~-~~~rIl~a 268 (386)
T 3o2t_A 190 ADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM-FMSEVIQA 268 (386)
T ss_dssp TTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG-GHHHHHHH
T ss_pred CCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH-HHHHHHHH
Confidence 11 0234567777777777753 444555677788888887774 55566665
Q ss_pred HHh
Q 000049 2434 LLN 2436 (2629)
Q Consensus 2434 ll~ 2436 (2629)
++.
T Consensus 269 L~~ 271 (386)
T 3o2t_A 269 YET 271 (386)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=89.02 E-value=4.1 Score=45.18 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=84.9
Q ss_pred ccchhhHHHHHHHHhcC------CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC--CCHhHHHHHHHHH
Q 000049 2225 KALQPLLPIFLQGLISG------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR--FPWQVKSAILSTL 2296 (2629)
Q Consensus 2225 k~l~~ilp~ll~~L~~~------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~--~~~~vk~~al~~L 2296 (2629)
.|+++++|-|.+-+.++ +...-.........+...-. -.+.||+-+++++++..+-.+ .+..+|..|...+
T Consensus 36 ~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL 114 (196)
T 4atg_A 36 SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIV 114 (196)
T ss_dssp SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 46777888776555432 34444555666777776544 468999999999988776432 1237999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Q 000049 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2629)
Q Consensus 2297 ~~L~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l 2340 (2629)
+.++++.+......-|.+.+++.+.+.|+ +....--|..+|..+
T Consensus 115 ~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 115 KYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 99999999887777899999999999997 566666666666655
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=87.57 E-value=29 Score=43.04 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccCchHHHHHHH
Q 000049 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 2318 (2629)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~lp~L~~~~ 2318 (2629)
+++.-...-+.-+..+.+.+++..+.+....+..-+.+.+... +..|-..|+.... .++.-+...-...+|-+.+.+
T Consensus 263 tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 263 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 4433333445668889999988888888888877777777764 6677777776653 222222222223456666666
Q ss_pred HHHcCCC-CHHHHHHHHHHHHHHHhccCC
Q 000049 2319 IKCLQDS-TRTVRSSAALALGKLSALSTR 2346 (2629)
Q Consensus 2319 ~k~L~d~-~~~vR~~Aa~aLg~l~~~~~~ 2346 (2629)
.+..... |.+||..+..++..++.+++.
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 6665555 999999999999998877653
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=85.53 E-value=41 Score=46.17 Aligned_cols=276 Identities=13% Similarity=0.146 Sum_probs=142.5
Q ss_pred HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcC---CCHHHHHHHHHHHHHHhhhcCc
Q 000049 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
++.++|.++.++.+++-.+...+..+|..+++..|......+|.++..+...|.. ..+.=-.+|+++|..++..+-.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667788888888888888888889999999988833333456666666666655 3444445677788777755432
Q ss_pred -----hhHHhHHHHHHhccCCCChhHH--HHHHHHHhccccccC-----Ch--hhh---hhHHHHHHHhh---c------
Q 000049 1533 -----PEIASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTV-----DA--PSL---ALLVPIVHRGL---R------ 1586 (2629)
Q Consensus 1533 -----~~i~~lvp~Ll~~l~d~~~~~r--~al~~L~~~~~~~~~-----~~--~~l---~~i~p~L~~~L---~------ 1586 (2629)
.++..++..++..+ |+++-.+ .+++.+.. +...+ .. ..+ ....|.+..-+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~--i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVS--IAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSK 493 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHH--HHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSS
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHH--HHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccc
Confidence 23334444444444 4443222 23333321 21111 00 000 00111111111 0
Q ss_pred ----CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCCCchhhHHH
Q 000049 1587 ----ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661 (2629)
Q Consensus 1587 ----d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~ 1661 (2629)
|.+.+.+ .++.. + ..+..++..++..+..++.+ .+..+-.....++..+...+.++.++.++..
T Consensus 494 ~~~~d~~~~~~--------~~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k 562 (799)
T 1vsy_4 494 TFRVDDELLNN--------AFKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASL 562 (799)
T ss_dssp SCCCCTTHHHH--------HHHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred cccccHHHHHH--------HHHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0111100 01111 1 13444556666667777663 3344445555666777777777777777777
Q ss_pred HHHHhccCCChHHHHHHHHH----HHHHHHhhChhHHHhHhHHHHHhhc----CC------Chhh--HH----HHHHHHH
Q 000049 1662 LLDALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCS----HQ------RASV--RD----GYLTLFK 1721 (2629)
Q Consensus 1662 Ll~~L~~~~~~~~R~~a~~~----L~~i~~~~g~~~l~~llp~l~~~l~----~~------~~~v--R~----~a~~~l~ 1721 (2629)
+.+...+............- +..++..-+. .+..++|.+...+. +. ..++ ++ -.+.++.
T Consensus 563 ~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~ 641 (799)
T 1vsy_4 563 LNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALN 641 (799)
T ss_dssp HHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHH
Confidence 77655543211111111111 3444444444 66777776664322 11 1111 22 3456677
Q ss_pred HhhhhhccchHhhHHhHHHHHHhhc
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAILDGL 1746 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2629)
.+....|..+.+|-++++..+...+
T Consensus 642 ~~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 642 DVLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHccHHHHHHHHHHHH
Confidence 7777778888888887777665554
|
| >3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* | Back alignment and structure |
|---|
Probab=83.79 E-value=13 Score=43.06 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=93.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhH-HHHHHHHHhhCCccccCChhHHH
Q 000049 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSPLFLS 2472 (2629)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2629)
.++..+..+...+.|-.|...+....+...++.+. .+..++. .-+.|..-... ...+..+++.+|...
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~-~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~~~-------- 132 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIP-FLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPELI-------- 132 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHH-HHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGGGG--------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHHHH--------
Confidence 35555666676778888877776655545444333 3444443 34567654322 234456666666532
Q ss_pred HHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000049 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2629)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~ 2552 (2629)
.+.+..-+.|+++.+|..|+.++ +.+... .....++..+...+.|++.=||.+...+|+.+++++|+.|.
T Consensus 133 -~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 133 -SAYIPKWIASDNIWLQRAAILFQ---LKYKQK------MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp -GGTHHHHHHSSCHHHHHHHHHTT---TTCGGG------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHH---HHHHhC------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 23456677889999999887764 222111 12344555556678899999999999999999999999999
Q ss_pred hhHHH
Q 000049 2553 VHVAL 2557 (2629)
Q Consensus 2553 ~~l~~ 2557 (2629)
+++..
T Consensus 203 ~fl~~ 207 (232)
T 3jxy_A 203 EYVQN 207 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=83.16 E-value=76 Score=36.97 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCc
Q 000049 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 2443 (2629)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~ 2443 (2629)
+.+-..+.-.++++-... +.+.+++++-+.....+++..+|.-.++.|+..+...+ +.+...++.+...+.+++.
T Consensus 30 ~~kl~~L~qa~el~~~~d----p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC----AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-ELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT----GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccC----HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCH
Confidence 345555555555443321 22344444444444445556666666666666554433 2333333333332333333
Q ss_pred hhhHhHHHHHHHHHh-------hCCcc-ccCChhH---HHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcC-----
Q 000049 2444 AARHGSVLVFATFLR-------HNPSA-ISMSPLF---LSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG----- 2507 (2629)
Q Consensus 2444 ~~~~~~~~~l~~~l~-------~~p~~-~~~~~~~---~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~----- 2507 (2629)
.+...++.+...++. .+|.. -.....| ..+-..+.+...+++..+|-+++.-+-.++..+....
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 333334443333321 11110 0001122 2345556666777888899888888888776543211
Q ss_pred ----------CCCch---------hhHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCchh
Q 000049 2508 ----------PANTT---------VVVDILASVVSALHDD--SSEVRRRALSALKSVAKANPSA 2550 (2629)
Q Consensus 2508 ----------~~~~~---------~l~~~l~~l~~~l~~~--~~~vr~~al~~l~~~a~~~~~~ 2550 (2629)
|.+++ .-..++..++..+.++ +.-.=.+++.++..++++.|..
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~ 248 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIF 248 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHH
Confidence 11111 1122444444444332 3334468888899999988875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2629 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-76 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-67 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-40 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-24 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-19 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 8e-38 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 7e-26 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-23 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-15 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 4e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-33 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-17 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 8e-05 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 6e-31 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 4e-18 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 7e-04 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-22 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 6e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-17 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-09 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 9e-19 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 9e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 2e-10 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-07 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 6e-16 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-13 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-09 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 7e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 4e-11 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 5e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 7e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 5e-10 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 8e-09 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-08 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 9e-05 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 0.001 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.001 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 4e-05 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 1e-04 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 0.002 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (704), Expect = 8e-76
Identities = 154/1100 (14%), Positives = 362/1100 (32%), Gaps = 77/1100 (7%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+ +LL+ + + + L+ + + + K+V + ++L D + +VQ+
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
L + S +K ++ ++V TL + + + I L+T A S + L
Sbjct: 65 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 1579 PIVHRGL---------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
V + + ++ + +A I+ +M S + ++ + +L + L
Sbjct: 125 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS--RQGGLLVNFHPSILTCLLPQLT 182
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
P VR A+G L+ G F DL+ LL L ++S Q ++ +
Sbjct: 183 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242
Query: 1690 GTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746
G Y E I+P +++ C+ +R+ + F+ R + ++ ++ L L
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 302
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806
+ D + + + +W++R+++ + L ++
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGG-DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361
Query: 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ E + + +V A +
Sbjct: 362 HEMLPEFYKTVSPALISRFKERE---------ENVKADVFHAYLSLLKQTRPVQSWLCDP 412
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---S 1923
L+ +P ++ L + S + RQ L ELV L +
Sbjct: 413 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472
Query: 1924 IIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
++P + L D S++ + L ++ + + L+P + + D ++
Sbjct: 473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 532
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
A L L K D +S A +K + T + +
Sbjct: 533 TSEALLVTQQLVKVIRPL--------------DQPSSFDATPYIKDLF----TCTIKRLK 574
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK--EAAE 2099
+ + +G + G L L L L + ++ + ++ A
Sbjct: 575 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAG 634
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
+ + + V L + NQ +++ + + KN L + + +
Sbjct: 635 SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 694
Query: 2160 VLLSDSDSTTVAAAW--------EALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK 2211
L V+ + ++ + + I ++R +
Sbjct: 695 PPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 754
Query: 2212 KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP 2271
+++ G + L + +A +Q+ + + + + KE
Sbjct: 755 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAV 814
Query: 2272 ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRS 2331
+ + + R ++ L +L + + +L++ ++ + V+S
Sbjct: 815 VGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKS 871
Query: 2332 SAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+A+ ALG +S + + + +L + S + +L +LK ++ A
Sbjct: 872 AASYALGSISVGN--LPEYLPFVLQEIT-SQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 2451
++++L ++ R A LG ++ LL L S S AR V
Sbjct: 929 IWALLLKHCECAEEGTRNVVAECLGKLTL----IDPETLLPRLKGYLISGSSYARSSVVT 984
Query: 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511
+ +P I PL + + +L+D +R + ++
Sbjct: 985 AVKFTISDHPQPI--DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK-------P 1035
Query: 2512 TVVVDILASVVSALHDDSSE 2531
+++ D+L +V+ L++++
Sbjct: 1036 SLIRDLLDTVLPHLYNETKV 1055
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 250 bits (637), Expect = 1e-67
Identities = 156/1107 (14%), Positives = 358/1107 (32%), Gaps = 92/1107 (8%)
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
L +K + +K D L K K DD VV +L +L + VQ
Sbjct: 8 LLEKMTSSDK-DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66
Query: 1322 SCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK---- 1376
CL PL+ + + + T+V L M SDK R ++ GL V+ +S
Sbjct: 67 KCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 1377 ---YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQV 1433
I L +A + + AL + + G L + +L LL +
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR 185
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ 1492
+AVR+ A ++ ++ LL L ++ + T ++ +Q + A++ A +
Sbjct: 186 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245
Query: 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTD- 1548
+ + L KI+P + + +++ A + P +++++ L LT
Sbjct: 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305
Query: 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608
PN + + D + + + S + ++ AA+ + + + T
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGS---DDEYSDDDDMSWKVRRAAAKCLDAV--VST 360
Query: 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
+ + + + P + + V++ A SL++ ++ ++
Sbjct: 361 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 420
Query: 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
+ ++ +I+ + + + R + L L
Sbjct: 421 PLTMLQS-----------------QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463
Query: 1729 VQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLP----AVED 1782
++ ++P I+ L D + +++ AL +V++ +++ + V
Sbjct: 464 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842
+ + ++I ++ + L+ + + + + T
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK------------ 571
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1902
+ +D+ V++ A+ I+ N L +P + + L + +
Sbjct: 572 -------RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 1903 QVA--GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
V G ++ VL +PIL+ L+ + + G L ++ + S
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQT 2017
+ +D ++ + + +S + V + A +TL K + I+ L+ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 2018 SDTALDGLKQIL-----SVRTTAVLPHILPKLVHLPLSAFNA-------HALGALAEVAG 2065
AL + + +L L S A +++
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 2066 PGLNFHLGTILPALLSAMGDDDMD--VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
++ + + + ++ LA + V ID G L S +L+
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
++ +++Y +G + ++ S +L +++S
Sbjct: 865 PSEEVKSAASYALG--------SISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS 916
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
Y++ I + + + G + LLP LISGS+
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSS 976
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
R + I + + + G ++ + D V+ L T +
Sbjct: 977 YARSSVVTAVKFTISDHPQ-PIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSAAHNK 1034
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVR 2330
++ L + + +R
Sbjct: 1035 PSLIRDLLDTVLPHLYNETKVRKELIR 1061
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (407), Expect = 4e-40
Identities = 140/999 (14%), Positives = 305/999 (30%), Gaps = 103/999 (10%)
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++ + K+L D EV+++A + +G L+ + E +V L + SD + R ++
Sbjct: 46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL-RDISS 104
Query: 1680 QGLSEVLAAL-----GTVYFEHILPDIIRNCSHQRA-----SVRDGYLTLFKYLPRSLGV 1729
GL V+ L G+ ++ I + A SV+ L + + G
Sbjct: 105 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDN 1788
N+ +L +L L +VR + A LV L+ + + ND+
Sbjct: 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 224
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
++ ++ + + + G+ L +++
Sbjct: 225 MSTTRTYIQCIAAISRQAGHRIGEYL----------------------------EKIIPL 256
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+ + +R+ + +++ V PK + + ++N + L +
Sbjct: 257 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 316
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
+ G+ S RR + V L F + P
Sbjct: 317 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR--HEMLPEFYKTVSP 374
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
+ + + V+ A+ +L K P + E T L+
Sbjct: 375 ALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT------MLQSQ 428
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
+ A+ + K + + L L V L H+ ++P ++ ++ D
Sbjct: 429 VPNIVKALHKQMKEK--SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 2089 DVQSLAKEAAETVTLVIDEEG------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142
+ ++ + V++LV ++ VGD I + + K
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV 546
Query: 2143 SKLYLVDEAPNMISTLIVLLS---------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
+ + + + L + D D A + +++ ++ +
Sbjct: 547 IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLP 606
Query: 2194 KVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLLPIFLQGLI----SGSAELREQ 2248
++ + +++ R + I G L L+P+L + L L+
Sbjct: 607 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLG 666
Query: 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
L LI+ S+ I + + V +S L+ + + +L
Sbjct: 667 TLSALDILIKNYSDSLTAAM-IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 2309 PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSL--------- 2358
+ I ++ + SA L + ++ + DLL L
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM 2418
++ +I + + + K + V + V D +R+ A LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNS---RSTDSIRLLALLSLGEV 842
Query: 2419 SQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK 2478
++ +L +L SSPS + + + N P L +
Sbjct: 843 GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--EYLPFVLQEIT--- 897
Query: 2479 SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS 2538
+ + +L ++ G V +I A ++ R
Sbjct: 898 -----SQPKRQYLLLHSLKEIISSASVVGLKP--YVENIWALLLKHCECAEEGTRNVVAE 950
Query: 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L + +P ++ P L L GS+ R +
Sbjct: 951 CLGKLTLIDPETLL-------PRLKGYLISGSSYARSSV 982
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (274), Expect = 2e-24
Identities = 127/948 (13%), Positives = 281/948 (29%), Gaps = 91/948 (9%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ L +DP + + ED
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 317
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 377
Query: 1178 RDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRML 1237
+NV A L + L ++ +
Sbjct: 378 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 437
Query: 1238 NAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297
+ +K + + E + + ++ + L
Sbjct: 438 K---QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP-------GIIFSLNDKSSS 487
Query: 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRG 1357
+ +D L + + + L+ + + ++ ++
Sbjct: 488 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV---ACVGDPFYKITSEALLVTQQLV 544
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
F + K T++ A + +E A+ + LG
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 1418 VIQMLPLLLVAFSD---QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
+ L + L + ++ V+ A + L + +P L L
Sbjct: 605 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRAL 663
Query: 1475 KQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
K ++ L + + + +P L ++ + T L +V
Sbjct: 664 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSS 723
Query: 1531 KNPEIASLVPTLLMGLTDP--NDHTKYSLDILLQTTFVNTVDAPSLALLVP-IVHRGLRE 1587
+ S++ L+ + P ++ Q V + L+ + +
Sbjct: 724 LSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ 783
Query: 1588 RSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+A T K++ + + +T PK+ +G + +VK +R +A ++G
Sbjct: 784 STALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--SIRLLALLSLGE 841
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
+ + +L S +L+A S + V +S A+ L + LP +++
Sbjct: 842 VGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYALGS----ISVGNLPEYLPFVLQEI 896
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
+ Q +L + + + V + Y++ + +L E R+ L
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT 956
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
T LP L + G + R S V + + D
Sbjct: 957 LIDPETLLPRLKGYLISG----SSYARSSVVTAVKFTI----------------SDHPQP 996
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
+ + I L L D L+VR+ AL + + N P +++++
Sbjct: 997 IDPLLKNCIGDF--------LKTL----EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1044
Query: 1886 LMNTLISSLASSSSERRQVA------GRALGELVRK-------------LGERVLPSIIP 1926
++ L + R+V G +RK L + +
Sbjct: 1045 VLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLN 1104
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974
+ GLKD + + L +++ S +L +D L+ +R
Sbjct: 1105 HVEDGLKDHYDIKMLT-FLMLVR-LSTLCPSAVLQRLDRLVEPLRATC 1150
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.5 bits (228), Expect = 5e-19
Identities = 162/1207 (13%), Positives = 327/1207 (27%), Gaps = 110/1207 (9%)
Query: 354 NALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSD 413
N L K + + K +L +D+ N EV+ + + + +
Sbjct: 25 NDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQVET 83
Query: 414 LLSFFASGLKE-KEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLD 472
++ + + KE LR L+ + S+L + + + T A+ + +
Sbjct: 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE 143
Query: 473 GIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCM--ACVEL 530
+ ++ A DI A+ + L+ PS++ + S + +
Sbjct: 144 DVSV-----QLEALDIMADML---SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195
Query: 531 LVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLL 590
L L++ + V L+ L+ + + S + I H L
Sbjct: 196 LGHLVMSCGNIVFV----DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Query: 591 EFSNF-LSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASAR 649
+ + + F V V T++ I L P+ +
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311
Query: 650 VIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANL 709
DA ++ + +S V L ++ +
Sbjct: 312 DEDED-------ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 364
Query: 710 LEQ--QAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSS 767
L + + +L + ++ L D E L+
Sbjct: 365 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 424
Query: 768 EQGV------YIAEIVAAKNTKQSKGRFRMYEE------QDGVDHVGSNHSAKRESANRE 815
Q + + + K+ K + F M E H+ S N +
Sbjct: 425 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 484
Query: 816 VSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSL-MLSALGEMA 874
S + K S + + + + V ++ L ++
Sbjct: 485 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 544
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++ L I A + ++ + ++ L
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 935 VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERIL 994
+ + + + L I TV + + P++
Sbjct: 605 LPNTLQIFLE---------------RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEG- 648
Query: 995 LSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGL 1054
+L + L L L + +L S AA+ A+ + L
Sbjct: 649 ---------VPILASFLRKNQRALKLGTLSALDILIKNYS--DSLTAAMIDAVLDELPPL 697
Query: 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVA 1114
+ + +++ I L + S L
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR-SPLLQGGALSAMLDFF 756
Query: 1115 EAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFS 1174
+A S S + ++A + + +
Sbjct: 757 QALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVG 816
Query: 1175 LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRG 1234
+I+D+ N + R L+L + + + ++ A + + +V+
Sbjct: 817 QFIQDV----KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL-EAFSSPSEEVKS 871
Query: 1235 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294
A I + + + + + + +Y L+ I + A L
Sbjct: 872 AASYALGSISVGNLPEYLPFVLQEITS------QPKRQYLLLHSLKEIISSASVVGL--- 922
Query: 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354
P V + LL E + V+ CL L + L + S
Sbjct: 923 KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR----LKGYLISGSSYA 978
Query: 1355 RRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412
R + + I L K I L+ L D + RR AL+ F
Sbjct: 979 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT-LEDPDLNVRR-VALVTFNSAAHNKPS 1036
Query: 1413 LFEPYVIQMLPLLL------------VAFS------DQVVAVREAA-ECAARAMMSQLSA 1453
L + +LP L V D + +R+AA EC + S L
Sbjct: 1037 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR 1096
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
+ L + GL+D + K + +L ++ P + Q L ++V L T T
Sbjct: 1097 LDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCT-TKV 1154
Query: 1514 KVQSAGQ 1520
K S Q
Sbjct: 1155 KANSVKQ 1161
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 153 bits (386), Expect = 8e-38
Identities = 117/915 (12%), Positives = 278/915 (30%), Gaps = 101/915 (11%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 63
Query: 1555 YSLDILLQTTFV---NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
++L+ + + + S + ++ + S K
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIAS-----K 118
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD--------LVSWLL 1663
+ LLP++ +L A A+ + E D ++ L
Sbjct: 119 GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 178
Query: 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEH---ILPDIIRNCSHQRASVRDGYLTLF 1720
K + + RS A +++ + + H ++ + VR
Sbjct: 179 QFFKHSSPKI-RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL 237
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPL 1775
L + ++ ++ +L D++E+V A L E LP
Sbjct: 238 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 297
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
L+P + +G+ + I ++ D + + E +
Sbjct: 298 LIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDD 357
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895
++ ++R+ + + L + L+ L+
Sbjct: 358 DDDEIDDDDT---------ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 408
Query: 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955
E + A+ E + LP +IP L + L D A R C LS
Sbjct: 409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468
Query: 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL 2012
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A
Sbjct: 469 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 528
Query: 2013 EDDQTSD--TALDGLKQI-LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN 2069
Q + D + + SV P + L+ + +N +
Sbjct: 529 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE----------D 578
Query: 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-NQASI 2128
L +L L S + + ++ + +++++ +
Sbjct: 579 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 638
Query: 2129 RRSSAYLIGYFYKNSKLYLVD--EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186
+ L+ + + N+++ + + D +++ L + + +
Sbjct: 639 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ 698
Query: 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 2246
V+P + +PI L +
Sbjct: 699 HVKP-----------------------------------CIADFMPILGTNLNPEFISVC 723
Query: 2247 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKGGI 2305
A +GE+ + ++ ++ + L+ II P + T+ +
Sbjct: 724 NNATWAIGEISIQMGIE-MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 782
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTV-RSSAALALGKLSALSTRVDPLVGDLLSSLQV--SD 2362
+ P L Q + L++ + SA + + +S ++ D + S
Sbjct: 783 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTM--ISVNPSGVIQDFIFFCDAVASW 840
Query: 2363 AGIREAILTALKGVL 2377
++ + +L
Sbjct: 841 INPKDDLRDMFCKIL 855
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (285), Expect = 7e-26
Identities = 119/816 (14%), Positives = 246/816 (30%), Gaps = 78/816 (9%)
Query: 1292 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQLM 1347
P + + +L L + E + L + Q+ + + +
Sbjct: 38 LNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 97
Query: 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407
R + + + + + L L EGA A + +C
Sbjct: 98 GDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDS-EDYNTCEGAFGALQKIC 154
Query: 1408 EKLGRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAM---MSQLSAQGVKLV 1459
E + + V+ M+P L F +R A +Q +
Sbjct: 155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 214
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+L D+ +++ + L + +L + IV + + D V
Sbjct: 215 TENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 274
Query: 1520 QTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+ ++ +P L+ L + ++ + +L + S +
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
P HR + +D I E+ +R
Sbjct: 335 PRFHR------------------SRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKC 376
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS--GAAQGLSEVLAALGTVYFEH 1696
+A A+ L +E P ++ L + L V+ S ++E Y
Sbjct: 377 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 436
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVLPAILDGLADENESVRD 1755
++P +I+ S ++A VR + Q + YL+ ++ +L + D N+ V++
Sbjct: 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 496
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
AA A L E T +P L + D + + + ++ +L D + +A + G L
Sbjct: 497 AACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN 555
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+ + + +L L V + + V++ V
Sbjct: 556 KPEYIQMLMPPLIQ-KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 614
Query: 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP-----SIIPILSR 1930
KTL + M + VA L L LG + +I+ ++ +
Sbjct: 615 QKTLAQAMLNNAQPDQYEAP--DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 672
Query: 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
++D RQ L + A + + + +P + T L + V +A A
Sbjct: 673 CMQDKMPEVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIG 731
Query: 1991 TLFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
+ G++ I ++ L+ + T T L+
Sbjct: 732 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT---------------------- 769
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 2083
A +G L V + L + +++
Sbjct: 770 ------AITIGRLGYVCPQEVAPMLQQFIRPWCTSL 799
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (266), Expect = 2e-23
Identities = 109/780 (13%), Positives = 246/780 (31%), Gaps = 78/780 (10%)
Query: 1093 PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAA 1150
+ ++ L P+ ++ + ++ DF + L + R +
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66
Query: 1151 AEALATALDEYPDSI-QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR 1209
L + + + G + S + +IG + R + + + + A
Sbjct: 67 GLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI------RATVGILITTIASKGE 120
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFEN 1261
++ P ++ L S L + + A I + ++++ P F
Sbjct: 121 LQNWPDLLPKLCS-LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 179
Query: 1262 YLNKKASD-------------EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-D 1307
+ + + + + FT L ++P+V V + L
Sbjct: 180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM 239
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL-MKSDKYGERRGAAFGLAGVV 1366
+L + + + + + ++Q QD+ + + +++ + L ++
Sbjct: 240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 299
Query: 1367 KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426
L+ + + + E + + + + I+
Sbjct: 300 PVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDD 359
Query: 1427 VAF----SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1482
+ +R+ + A + + + + +LP L + L W K+S + +L
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419
Query: 1483 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASL 1538
GA+A Q + LP+++P L + L+D V+S L + + + + L
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
+ LL + D N + + T T P LA ++ + + +
Sbjct: 480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLIL 539
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL---------VDPIPEVRSVAARAIGSLI 1647
+G + V + YI +L+P + + + P+ E S A A+ S
Sbjct: 540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599
Query: 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSG------------AAQGLSEVLAALGT---- 1691
E + V+ + L N + A LS + LG
Sbjct: 600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 659
Query: 1692 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750
V +IL + + + VR L L ++ + + +P + L E
Sbjct: 660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
Query: 1751 ESVRDAALGAGHVLVEH-------YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
SV + A A + Y L L+ + + +++ +G L
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKT--LLENTAITIGRLG 777
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/288 (14%), Positives = 102/288 (35%), Gaps = 8/288 (2%)
Query: 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAIL 2370
L Q+ +K Q T++ + L +L+ + L+ +L+ L+ D R
Sbjct: 10 LQQI-LQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLI-FVLTKLKSEDEPTRSLSG 67
Query: 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL 2430
LK +K ++ + V + S + + +R + ++ ++ E DL
Sbjct: 68 LILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL 127
Query: 2431 LQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEKFP 2487
L +L +L S + G+ + + L ++ + K
Sbjct: 128 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 187
Query: 2488 LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547
+R + + + ++ + Q+ + + ++ + D+ EVR+ AL + +
Sbjct: 188 IRSHAVACVNQFIISRTQALMLH---IDSFTENLFALAGDEEPEVRKNVCRALVMLLEVR 244
Query: 2548 PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQ 2595
++ H+ + + +D V L A + + + +
Sbjct: 245 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 292
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.2 bits (178), Expect = 4e-13
Identities = 109/796 (13%), Positives = 239/796 (30%), Gaps = 97/796 (12%)
Query: 1037 PSYQAAIGSALNELCLGLQPNEVASALHGVYTK----DVHVRMACLNAVKCIPAVSTRSL 1092
P +A +G + + + L + + D + A++ I S L
Sbjct: 102 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 161
Query: 1093 PENI------EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYD--------FGTDYSGLFKA 1138
++ + + A +++ + LF
Sbjct: 162 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFAL 221
Query: 1139 LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198
VR AL L+ D + + + ++ +NV A +
Sbjct: 222 AGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV-ALEACEFWLT 280
Query: 1199 LALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPI 1258
LA + + LP ++ L+ + ++ D+ +L G + D+ D+ + P
Sbjct: 281 LAEQPICKDVLVRHLPKLIPVLV-NGMKYSDIDI---ILLKGDVEEDETIPDSEQDIRPR 336
Query: 1259 FENYLNK---------KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL 1309
F + D++ ++ + + A D + D+LL +
Sbjct: 337 FHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHI 396
Query: 1310 ----------------NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
+ + C+ ++ + + P L+ Q + K
Sbjct: 397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI-----QCLSDKKAL 451
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAA--TLREGLADRNSAKRREGALLAFECLCEKLG 1411
R + L+ Y L + + D N + +E A AF L E+
Sbjct: 452 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEAC 510
Query: 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471
PY+ +L L+ AFS A + + K +L +
Sbjct: 511 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 570
Query: 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD----------------THPKV 1515
W + + L + C + +P V P
Sbjct: 571 WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 630
Query: 1516 QSAGQTALQQV-------------GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
A V G++ + ++++ + + D + S LL
Sbjct: 631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 690
Query: 1563 TTFVNTVD--APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
P +A +PI+ L A +G + + +M PYI ++
Sbjct: 691 DLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS--IQMGIEMQPYIPMV 748
Query: 1621 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVER 1675
L ++ +++ P + A IG L +E + +L++ N E+
Sbjct: 749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 808
Query: 1676 SGAAQGLSEVLAALGTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQ 1732
A +G+ +++ + + + D + + + + +RD + + +G ++
Sbjct: 809 DSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWR 868
Query: 1733 NYLQQVLPAILDGLAD 1748
+ Q + + LA
Sbjct: 869 RFSDQFPLPLKERLAA 884
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 139 bits (349), Expect = 1e-33
Identities = 126/962 (13%), Positives = 286/962 (29%), Gaps = 165/962 (17%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556
+ L + ++ +T L++ + N L D N +
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKK----LSNDNFLQFAGLSSQVLIDENTKLEGR 58
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
+ L T N + + R + + S E K QI N +
Sbjct: 59 ILAAL--TLKNELVSKDSVKTQQFAQRWITQVSPEAK---NQIKTNALTA---------- 103
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVER 1675
LV P + + AA+ I ++ + +P+L+ ++D ++ +
Sbjct: 104 -----------LVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 1676 SGAAQGLSEVLAALGTVY------FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSL 1727
+ L + + +IL I++ S VR L +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212
Query: 1728 GVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---- 1781
+ + ++ + + E+ V+ AA G ++ Y T P + A+
Sbjct: 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTI 272
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
+ + N ++ +VE + + + +
Sbjct: 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-------------------------- 306
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSS 1898
Q+ L + + ++K+++P L+N L
Sbjct: 307 ------------------FPQSPLQSYNFAL----SSIKDVVPNLLNLLTRQNEDPEDDD 344
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
AG L + G +L ++ + + + + R+ + +M K Q
Sbjct: 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
++ + +P+I + D L+V+E+ + D + ++
Sbjct: 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI--------ADSVAESIDPQQHLPGVV 456
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
L GL+ V T I + + LAE + ++
Sbjct: 457 QACLIGLQDHPKVATNCSWTII--------------NLVEQLAEATPSPIYNFYPALVDG 502
Query: 2079 LLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGY 2138
L+ A D + + + +A + + E +++ + ++ +
Sbjct: 503 LIGAANRIDNEFNA--RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 2139 FYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198
L + N+++ L ++ S S+ A + + +++
Sbjct: 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM------------GLFFRLLEK 608
Query: 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIE 2258
S + + G K L+ P L+ L + + A+G I
Sbjct: 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS-ITAVGFIADIS 667
Query: 2259 VTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
+ E+ + + + L ++I + ++K A+LS I G P+L +
Sbjct: 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727
Query: 2318 FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV- 2376
+ A K+ EA+L A G+
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKV-------------------------LEAVLDAYVGIV 762
Query: 2377 --LKHAGKSVSSAVKI---RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431
L +++ V + V +D + +D +A ++G ++ DG +
Sbjct: 763 AGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
Query: 2432 QE 2433
+
Sbjct: 823 GQ 824
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.6 bits (215), Expect = 1e-17
Identities = 91/786 (11%), Positives = 214/786 (27%), Gaps = 76/786 (9%)
Query: 1265 KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL 1324
+ S+ + L + + F G ++ L ++ K+ + L + N
Sbjct: 22 RLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81
Query: 1325 SPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384
+ + EA + + S + AA +A + + + +
Sbjct: 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD-IELPHGAWPELMKIMV 140
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-----VAFSDQVVAVREA 1439
+ + +LLA +CE + V +L+ ++ AVR A
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200
Query: 1440 AECAARAMMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
A A + + ++ + + + + + ++ L + +
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260
Query: 1495 QCLPKIVPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKN--------------------P 1533
+ + + LT + + KV S + +
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320
Query: 1534 EIASLVPTLLMGLTDPN-----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588
I +VP LL LT N D S+ + V
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
++AA + + Y+ LP + ++ D +V+ A IG +
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440
Query: 1649 GMGE-----ENFPDLVSWLLDALKSDNSNVERSGA-----AQGLSEVLAALGTVYFEHIL 1698
+ E ++ P +V L L+ + L+E + ++ ++
Sbjct: 441 SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500
Query: 1699 PDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
+I + R + + + ++D L +
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
+ +L + I + + L+G + + +
Sbjct: 561 LT----LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED 616
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876
A + G+ + L L + V V A+ I +
Sbjct: 617 DVFYAISALAASLGKGFEKYL-----ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671
Query: 1877 KTLKEIMPVLMNTLISSLASSSSER--RQVAGRALGELVRKLGE---RVLPSIIPILSRG 1931
+ + +MN L +++ ++ R + G++ +G L I+ +
Sbjct: 672 EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731
Query: 1932 LKDPSASR-----------RQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALCDSI 1978
+ + V ++A L ++ + I D
Sbjct: 732 QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ 791
Query: 1979 LEVRES 1984
L ++
Sbjct: 792 LYSEDA 797
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.1 bits (180), Expect = 2e-13
Identities = 97/708 (13%), Positives = 218/708 (30%), Gaps = 77/708 (10%)
Query: 1135 LFKALSHSN-YNVRLAAAEALATALDEYP---DSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
+ NV+ A+ AL + ++ S + + ++ +
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+A +L + + + + ++ A + +V+ I+ K+
Sbjct: 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
+ A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTI--ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
+++ V + L+ L + +D + D + A L + G
Sbjct: 317 FALSSIKDVVPNLLNLLTRQNEDP-------------EDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAF 1429
L+ E ++ + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEPVL---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
+DQ + V+E + ++ Q + V+ + L GL+D S ++
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQVGSVIKN------- 1532
+ A S + ++ D +++ +AL + +
Sbjct: 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540
Query: 1533 -------PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL-------ALLV 1578
++ + LT + + L + T + L+
Sbjct: 541 SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
++ SA + + + + + K Y+ P + K L V
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASL--GKGFEKYLETFSPYLLKALNQVDSPVSIT 658
Query: 1639 AARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYF 1694
A I + + E+ +++ L + + N+ E + ++ + +G F
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-F 717
Query: 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754
L DI+ C + P + ++ +Y +VL A+LD +
Sbjct: 718 IPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
Query: 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
D + Y T + ED +++V L+GD+
Sbjct: 767 DK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 8e-05
Identities = 83/688 (12%), Positives = 193/688 (28%), Gaps = 64/688 (9%)
Query: 883 SQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVD 942
Q +LV + +L + + G + E + L + + I + E +
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM------EREGE 221
Query: 943 SDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF--TFVFPIIERIL--LSPK 998
+ + V A E + + L + + ++ + + + K
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 999 RTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNE 1058
+ + + + + S L + S + + + LN L + E
Sbjct: 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341
Query: 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE 1118
+ A + V + A S+ + +
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401
Query: 1119 DIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIR 1178
+ Y ++ + V+ A + D +SI L +
Sbjct: 402 KVQRTYYVHQALPSI--LNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQA 458
Query: 1179 DIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM----TFLISRALADTNADVRG 1234
+ D+ I + A+ + + + D + R
Sbjct: 459 CLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518
Query: 1235 RMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL------VREGVVIFTG 1285
+A +++ + + + L + S +E ++E
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578
Query: 1286 ALAKHLAKDDPKVHAVVDKLLDV-----LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVS 1340
LA + K V V D L+ + S ++ V +S L S+ +
Sbjct: 579 VLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638
Query: 1341 RLLDQLMKS--DKYGERRGAAFGLAGVVKGFGISSLKKY--GIAATLREGLADRNSAKR- 1395
L+K+ A G + ++Y + L + +++ N+ +
Sbjct: 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698
Query: 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455
+ L F + +G F PY+ ++ L + A + + A ++ +
Sbjct: 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVL-----EA 753
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPK 1514
V ++ GL DK P+ L + I + +V D
Sbjct: 754 VLDAYVGIVAGLHDK-------------------PEALFPYVGTIFQFIAQVAEDPQLYS 794
Query: 1515 VQSAGQTALQQVG---SVIKNPEIASLV 1539
+ + A+ +G ++ + I
Sbjct: 795 EDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 131 bits (328), Expect = 6e-31
Identities = 125/904 (13%), Positives = 272/904 (30%), Gaps = 107/904 (11%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 1165 IQGSLSTLFSL-------YIRDI---GLGGDNVDAGWLGRQGIALALHSAADV-LRTKDL 1213
I+ + +++ LG + + + A +
Sbjct: 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYR-----PSSASQCVAGIACAEIPVNQW 126
Query: 1214 PVIMTFLISRALA-DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
P ++ L++ ++ ++ L A I + + + + EE
Sbjct: 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
Query: 1273 YDLVREGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ V+ + + + H ++ + + P V+ A L +M
Sbjct: 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246
Query: 1330 SMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ L +++ K A G+ + + ++ +A E
Sbjct: 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGI----EFWSNVCDEEMDLAIEASEAAE 302
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV----AVREAAECAA 1444
E + + Y++ +L L + +AA
Sbjct: 303 Q----------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPKIVPK 1503
+ + V VLP + + +++ WR + ++V G + P QL + + +P
Sbjct: 353 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412
Query: 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLD 1558
L E++ D V+ + ++ ++ I A L+ L+ GL+
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW 472
Query: 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618
A L +K + +
Sbjct: 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR--PDGHQNNLRSSAYE 530
Query: 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 1678
L+ VK D P V+ + L + + S + N +S
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERL------QQVLQMESHIQSTSDRIQFNDLQSLL 584
Query: 1679 AQGLSEVLAALGTVYFEHILPDIIRNC------SHQRASVRDGYLTLFKYLPRSLGVQFQ 1732
L VL + I ++ + + V++ L L LG +F
Sbjct: 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644
Query: 1733 NYLQQVLPAILDGLADENES-VRDAALG-------AGHVLVEHYATTSLPLLLPAVEDGI 1784
Y++ P + GL + E V AA+G A + + + LLL + +
Sbjct: 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-- 702
Query: 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844
N + ++ + + GD+ + G + + ++ L + + +
Sbjct: 703 ENVHRSVKPQILSVFGDIALAI----------------GGEFKKYLEVVLNTLQQASQAQ 746
Query: 1845 VLAALYMVRSDVSLSVRQAALHVWKTIV-------ANTPKTLKEIMPVLMN-----TLIS 1892
V + Y D +R++ L + IV N + + P + I+
Sbjct: 747 VDKSDY-DMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805
Query: 1893 SLASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQGVCIG 1946
+ A +G+L G+ VL P I +L+ G + + +
Sbjct: 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865
Query: 1947 LSEV 1950
E+
Sbjct: 866 TKEL 869
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.4 bits (220), Expect = 4e-18
Identities = 103/830 (12%), Positives = 259/830 (31%), Gaps = 106/830 (12%)
Query: 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQL 1481
+L + A++C A +++ ++P L+ + + K+S+++
Sbjct: 94 YVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 1482 LGAMA-YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--------N 1532
+G + P+QL +I+ + + + P A + + ++
Sbjct: 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA-ATNALLNSLEFTKANFDKE 212
Query: 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRERS 1589
E ++ + P+ + + L + ++ L I ++
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
E + + N+C D + + E + P + A A+ L+
Sbjct: 273 DEVALQGIEFWSNVC-------DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV-- 323
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR 1709
++ + D+ N A L + H+LP I + +
Sbjct: 324 ---PILTQTLTKQDENDDDDDWNP-CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD 379
Query: 1710 ASVRDGYLTLFK-YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768
RD + F L Q + + Q +P +++ + D + VRD A + E
Sbjct: 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 1769 ATTSLP-LLLPAVEDGIFN---DNWRIRQSSVELLGDLLFKV--AGTSGKALLEGGSDDE 1822
++ + L + + R+ + L A E +
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499
Query: 1823 GASTEAHGRAIIEVLGR--DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880
+S E + ++E R +N + ++ Y ++ + + + + L+
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG--------ERVLPSIIPILSRGL 1932
+++ + + +S ++ + + L ++RK+ + V+ S++ +
Sbjct: 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFST 1991
+ + + + L +M+ P + L + + +V +A
Sbjct: 620 GSGGVQEDALMAVS---TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1992 LFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048
L ++ DE++ LL L ++ SV+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHR----------SVKPQIL------------ 714
Query: 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 2108
G +A G +L +L L A + + E
Sbjct: 715 ------SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RE 763
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168
+ +++G+ +Q ++ + ++S + + D D T
Sbjct: 764 SCLEAYTGIVQGLKGDQENVHPDVMLVQPRV------------EFILSFIDHIAGDEDHT 811
Query: 2169 --TVAAAWEALSRVVASVPKEV------QPSYIKVIRDAISTSRDKERRK 2210
VA A + + + K+V +P +++ + S+ + +
Sbjct: 812 DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRR-SKTNKAKT 860
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 7e-04
Identities = 42/354 (11%), Positives = 96/354 (27%), Gaps = 86/354 (24%)
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
L+ +S E A ++ L+ + + L
Sbjct: 7 LEKTVSPDRLELEAA------------QKFLERAAV----------------ENLPTFLV 38
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK-LSALSTRVDPLVGD 2353
LS ++ G + R +A L + L++ +
Sbjct: 39 ELSRVLANPGNSQ--------------------VARVAAGLQIKNSLTSKDPDIKAQYQQ 78
Query: 2354 LLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAA 2412
++ + ++ +L L + + SA+
Sbjct: 79 RWLAIDANARREVKNYVLHTL----------------------------GTETYRPSSAS 110
Query: 2413 SILG-IMSQCMEDGQLADLLQELLNLASSP--SWAARHGSVLVFATFLRHNPSAISMSPL 2469
+ I + Q +L+ +L+ ++P + + ++ + +
Sbjct: 111 QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ-LQDK 169
Query: 2470 FLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 2527
IL + ++ E ++ A+T AL L ++ + I+ V A
Sbjct: 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLN-SLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 2528 DSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECLKDGSTPVRLAAERC 2580
+ VR AL L + + ++ E +K V L
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 4e-22
Identities = 97/665 (14%), Positives = 206/665 (30%), Gaps = 110/665 (16%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+ L+ L ++ + + +S++ L +A + + +++P LT+ + D V A
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDE-VLLAL 68
Query: 1520 QTALQQVGSVIKNPEIA-SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSL 1574
L +++ PE L+P L T + SL + + ++A
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA--- 125
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
VP+V R ++ A + P+ L + + D P
Sbjct: 126 -HFVPLVKRLAGGDWFTSRTSACGLFSVCY-----PRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 1635 VRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
VR AA +G + + +N +++ + + +V ++
Sbjct: 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239
Query: 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 1753
++P + + + S R Y+ K+ V + ++PA + + D V
Sbjct: 240 EALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1754 RDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1800
R AA E+ + + +LP +++ + + N ++ + ++
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1801 -DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
+ + + L + + + R +L A+ + D
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-E 1918
VR A + + + L + ++ L R+ A L +LV K G E
Sbjct: 418 VRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475
Query: 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978
+IIP + DP+ R ++ + G+
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT------------------ 517
Query: 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038
++PT+L D + +VR
Sbjct: 518 -----------------------KHMLPTVLRMAGD------------PVANVRFNV--- 539
Query: 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098
A +L + + + P L D D+DV+ A+EA
Sbjct: 540 ---------------AKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Query: 2099 ETVTL 2103
++L
Sbjct: 583 TVLSL 587
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (239), Expect = 1e-20
Identities = 102/619 (16%), Positives = 201/619 (32%), Gaps = 53/619 (8%)
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
A L + L + + R ++ + LG E ++LP L D+ + A
Sbjct: 13 AVLIDELRNEDVQLRLN-SIKKLSTIALALG--VERTRSELLPFLTDTIYDEDEVLLALA 69
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPK 1499
E + V +LP L + + +V+ L A++ +P L
Sbjct: 70 EQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV- 128
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
P + + +++ + + A L +D + +
Sbjct: 129 --PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L + ++P+ + + A + N+ L+ + L
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEAL 242
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++P +++ D VR + A L + +G E + L D R+ A+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 1680 QGLSEVLAALGTVYFEHILPDIIRNCSHQRA---SVRDGYLTLFKYLPRSLGVQFQNYLQ 1736
+ E L E+++ I C + + + S + N ++
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSS 1795
+LP L L DE VR + + E LLPA+ + + WR+R +
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RS 1854
+E + L LG + +E L +L M
Sbjct: 423 IEYMPLL-------------------------------AGQLGVEFFDEKLNSLCMAWLV 451
Query: 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
D ++R+AA K +V K + ++ +++ + R + L
Sbjct: 452 DHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509
Query: 1915 KLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
G+ + ++P + R DP A+ R V L ++ S L E+ P +
Sbjct: 510 VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKL 566
Query: 1974 LCDSILEVRESAGLAFSTL 1992
D ++V+ A A + L
Sbjct: 567 TQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.9 bits (234), Expect = 4e-20
Identities = 101/665 (15%), Positives = 205/665 (30%), Gaps = 93/665 (13%)
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ LI L + + R + + L + LG ER ++P L+ + D V +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-----VLL 66
Query: 1946 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005
L+E QL +F + G + + ++
Sbjct: 67 ALAE--------QLGTFTTLVG-----------------------------GPEYVHCLL 89
Query: 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065
P L ++T VR AV +L A++
Sbjct: 90 PPLESLATVEETV------------VRDKAV------------------ESLRAISHEHS 119
Query: 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125
P +P + G D ++ A + L D+
Sbjct: 120 PSDL--EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 177
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
+RR++A +G F K +L V +I L SD + A EA + +P
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
+E + + + + R L L+P F + A
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRK 2302
E+R A+ + E E S + ++ P I+ + D + + +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD 2362
G L L +K R S + ++ + L+ ++ + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM 2422
+R AI+ + + G ++ S+ + +R +A S L + +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 2423 -EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2542 SVAKA 2546
++ A
Sbjct: 584 VLSLA 588
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 4e-18
Identities = 74/545 (13%), Positives = 155/545 (28%), Gaps = 21/545 (3%)
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
L +A G +LP L + D+D + +LA++ TLV E V L
Sbjct: 31 IKKLSTIALALGVERT--RSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L + +R + + ++ + + L T+ +A
Sbjct: 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSA 146
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK-KGGPILIPGFCLPKALQPLLP 2232
S V V+ + R+ S RR L ++P
Sbjct: 147 CGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIP 206
Query: 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 2292
+F +R A + ++ ++ L+ V+P R + V
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 2293 LSTLSIIIRKGGIALK-PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLV 2351
+ + P L ++ + L + + ++
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326
Query: 2352 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSA 2411
+ + ++ ++ A+ + + G+ GK + + ++ + +S
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 2412 ASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFL 2471
+ LL ++ LA W R + F
Sbjct: 387 LDC--VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-----FD 439
Query: 2472 SILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530
L+ L + D + +REA+T L +L+ I+ V++ D +
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLV-----EKFGKEWAHATIIPKVLAMSGDPNY 494
Query: 2531 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
R L + +++ I L P + D VR + +
Sbjct: 495 LHRMTTLFCINVLSEVCGQDITTKHML--PTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552
Query: 2591 SEYIQ 2595
S
Sbjct: 553 STLQS 557
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 6e-18
Identities = 94/632 (14%), Positives = 188/632 (29%), Gaps = 67/632 (10%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192
+ L L + + +RL + + L+T
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLST------------------------------------ 36
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA-GIMIIDKHGRDN 1251
IALAL + R++ LP + + +V + G G +
Sbjct: 37 ----IALAL--GVERTRSELLPFLTDTI------YDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT 1311
V L P E+ + EE VR+ V A++ + D + H V + +
Sbjct: 85 VHCLLPPLESLA----TVEETV--VRDKAVESLRAISHEHSPSDLEAH-FVPLVKRLAGG 137
Query: 1312 PSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371
+ + S + + + L D RR AA L K +
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197
Query: 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS- 1430
++K I +D + R E V+ L S
Sbjct: 198 DNVKSE-IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
V + +A+ +++ + +L+K + R S A
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSAD 315
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+ + + +I+P + E+++D + V+SA + + + ++ + L +
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
I + L+ + L E + + A + +
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSD 1669
+ L LVD + +R A + L+ G+E ++ +L
Sbjct: 436 EFFDEK---LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
N R ++ + G +H+LP ++R A+VR + + L
Sbjct: 493 NYLH-RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGA 1760
+V P + D++ V+ A A
Sbjct: 552 NS--TLQSEVKPILEKLTQDQDVDVKYFAQEA 581
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.8 bits (213), Expect = 2e-17
Identities = 89/624 (14%), Positives = 195/624 (31%), Gaps = 58/624 (9%)
Query: 1964 DELIP--TIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDT 2020
D L P + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 7 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 66
Query: 2021 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 2080
AL A LG + G ++ +LP L
Sbjct: 67 AL-------------------------------AEQLGTFTTLVG--GPEYVHCLLPPLE 93
Query: 2081 SAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYF 2139
S ++ V+ A E+ ++ +E+ L+K + G + + R S+ L
Sbjct: 94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC 153
Query: 2140 YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199
Y + E + L SD AA L + + S I +
Sbjct: 154 YPRVSSAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210
Query: 2200 ISTSRDKERRKKKGGPILIPGFCLPKA--LQPLLPIFLQGLISGSAELREQAALGLGELI 2257
+++ R + LP+ ++P Q S +R A EL
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII-IRKGGIALKPFLPQLQT 2316
+ + K ++P ++ D +A + Q+
Sbjct: 271 KAVGPEITKTDLVPA---FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327
Query: 2317 TFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376
+ + D+ + V+S+ A + LS + + + + L L E L + +
Sbjct: 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL 387
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
+ + + +L VR++ + +++ + + L L
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447
Query: 2437 -LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
+A R + + + + +I+ ++ + D + R +
Sbjct: 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFC 503
Query: 2496 LGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555
+ L +L +V+ D + VR +L+ + ++
Sbjct: 504 INVLS-----EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQ 556
Query: 2556 ALFGPALAECLKDGSTPVRLAAER 2579
+ P L + +D V+ A+
Sbjct: 557 SEVKPILEKLTQDQDVDVKYFAQE 580
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 2e-12
Identities = 83/574 (14%), Positives = 197/574 (34%), Gaps = 29/574 (5%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDG 1715
++ L+D L++++ + R + + LS + ALG +LP + + +
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775
L + G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA-----LLEGGSDDEGASTEAHG 1830
+ + +W ++S L + + ++ KA SDD A
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSL--SVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888
+ E + + V + + + S+++ L V + +++ ++M
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 1889 TLISSLASSSSERRQVAGRALGELVR-KLGERVLPSIIPILSRGLKDPSASRRQGVCIGL 1947
TL + S R + EL + E ++P +KD A R +
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 1948 SEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
E + + + +++P I+ + D+ V+ + L G E +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN----------AHA 2056
L A D+ + L+ + + V + + L+ +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 2057 LGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGVESLVS 2115
+ LA G F + ++ + D ++ A + + E +++
Sbjct: 426 MPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
++L GD R ++ + I + + +M+ T++ + D + +
Sbjct: 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT--TKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209
+L ++ + S +K I + ++ +D + +
Sbjct: 542 SLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 3e-12
Identities = 86/550 (15%), Positives = 170/550 (30%), Gaps = 38/550 (6%)
Query: 1146 VRLAAAEALATALD-----EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
V LA AE L T EY + L +L ++ + R +
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV-------------RDKAVES 110
Query: 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFE 1260
L + + DL L+ R R + + + L F
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1261 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAV 1320
N + VR G AK L + D ++ ++ + ++V+
Sbjct: 171 NLCSDDTPM------VRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 1321 SSCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ Q + Q++ LV L Q + + R A + K G K +
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
A A+ R A + CE L V ++ +L + V +
Sbjct: 284 PAFQNL--MKDCEAEVRAAASHKVKEFCENLSADCRENV--IMSQILPCIKELVSDANQH 339
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY---CAPQQLSQC 1496
+ A +++ LS K L L + + V+L + Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY 1555
++P + E+ D +V+ A + + + + +L M D +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ L+ + A ++P V + + + ++++E
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC----INVLSEVCGQDI 515
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675
+LP V ++ DP+ VR A+++ + + V +L+ L D +
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Query: 1676 SGAAQGLSEV 1685
A + L+ +
Sbjct: 576 YFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 5e-12
Identities = 93/591 (15%), Positives = 193/591 (32%), Gaps = 40/591 (6%)
Query: 1069 KDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYGY 1126
+DV +R LN++K + ++ E E+ L ++D ++ + AE +
Sbjct: 22 EDVQLR---LNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL 78
Query: 1127 DFGTDYSG-----LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIG 1181
G +Y L + VR A E+L E+ S + L R
Sbjct: 79 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH--SPSDLEAHFVPLVKRLA- 135
Query: 1182 LGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGI 1241
W + A L S + + + +D VR +
Sbjct: 136 ------GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
DNV + ASDE+ + + L + V
Sbjct: 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLA---VEACVNIAQLLPQEDLEALV 243
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAF 1360
+ L S V+ V+ + L +++ E T + LMK + R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASH 303
Query: 1361 GLAGVVKGFGISSLKKYGIAATL--REGLADRNSAKRREGALLAFECLCEKLGR--LFEP 1416
+ + + ++ L + L + + L LG+ E
Sbjct: 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363
Query: 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
+ L L + + + +C + + Q + +LP++++ ED WR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL 420
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNPEI 1535
+ ++ + +A + K+ L D ++ A + L+++ K
Sbjct: 421 AIIEYMPLLAGQLGVEFFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595
A+++P +L DPN + + + + ++P V R + A +
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
A+ + + ++ + P ++K+ D +V+ A A+ L
Sbjct: 539 VAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 3e-09
Identities = 74/540 (13%), Positives = 149/540 (27%), Gaps = 31/540 (5%)
Query: 1004 DDVLQMLYKHMDPLLPL-----PRLRMISVLYHVLGV-VPSYQAAIGSALNELCLGLQPN 1057
D+VL L + + L ++ L + V + +L + P+
Sbjct: 62 DEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 1058 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENI-EVSTSLWIAVHDPEKSVA 1114
++ + + + + +A R E+ D V
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVR 181
Query: 1115 EAAEDIWDRYGYDFGTDY------SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGS 1168
AA + D S +VRL A EA P
Sbjct: 182 RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---D 238
Query: 1169 LSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADT 1228
L L +R + + L ++ +T +P +
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 1229 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288
A + D +S + P + ++ + + L+
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA------LASVIMGLS 352
Query: 1289 KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK 1348
L KD+ H + L + + E +S+ + + + +L +
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408
K+ R + + G+ + +L + RE A + L E
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGL 1467
K G+ E ++P +L D R + K +LP++L+
Sbjct: 471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
Query: 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527
D + + + L + Q ++ P L ++ D V+ Q AL +
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 8e-07
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 10/192 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKE 2207
D++ I+ LI L + D + + LS + ++ + + + + D I D+
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEV 64
Query: 2208 RRK-KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 2266
+ P+ + LLP +R++A L + S L+
Sbjct: 65 LLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLE 124
Query: 2267 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST 2326
+ PL++ + + +++ S+ + A+K L Q F D T
Sbjct: 125 AHFV----PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQY---FRNLCSDDT 177
Query: 2327 RTVRSSAALALG 2338
VR +AA LG
Sbjct: 178 PMVRRAAASKLG 189
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 7e-05
Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 12/190 (6%)
Query: 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVF 2453
+VL D + ++D +R+++ L ++ + + L L
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQL 72
Query: 2454 ATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV 2513
TF + L L L+S E+ +R+ + ++L + + +
Sbjct: 73 GTFTTLVGGPEYVHCL----LPPLESLATVEETVVRDKAVESLRAISHE------HSPSD 122
Query: 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPV 2573
+ +V L R + L + P A D + V
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGL--FSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 2574 RLAAERCAVH 2583
R AA
Sbjct: 181 RRAAASKLGE 190
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 9e-19
Identities = 60/414 (14%), Positives = 131/414 (31%), Gaps = 42/414 (10%)
Query: 1633 PEVRSVAARAIGSLIR---------------GMGEENFPDLVSWLLDALKSDNSNVERSG 1677
R A I + + + ++ +++L L ++ S
Sbjct: 50 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--RPSS 107
Query: 1678 AAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733
A+Q ++ + A V L + N + + Q Q+
Sbjct: 108 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 167
Query: 1734 YLQQVLPAILDGLADENES--VRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFN 1786
++L AI+ G+ E S V+ AA A +E + V +
Sbjct: 168 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 227
Query: 1787 DNWRIRQSSVELLGD-------LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839
+ R+R ++++ L + G + A+ + G +
Sbjct: 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287
Query: 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899
++ + + + + + H K + L I+ + +
Sbjct: 288 EEMDLAI------EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341
Query: 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959
+ AG L L + ++P ++P + +K+P R + ++ SQL
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401
Query: 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + +PT+ + D + VR++A + + AI D + LL L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 1e-16
Identities = 61/461 (13%), Positives = 141/461 (30%), Gaps = 34/461 (7%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 11 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 70
Query: 1165 IQGSLSTLFS-------LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 1217
I+ + +++ L + A + P ++
Sbjct: 71 IKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELI 129
Query: 1218 TFLISRALAD-TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276
L++ + ++ L A I + + + + EE + V
Sbjct: 130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 189
Query: 1277 REGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--- 1330
+ + + + H ++ + + P V+ A L +M
Sbjct: 190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249
Query: 1331 -MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
M+ + + + MKSD + V + +
Sbjct: 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-------------MDLAIEA 296
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
+A++ + + + P + Q L D +AA + +
Sbjct: 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVL 1508
V VLP + + +++ WR + ++V G + P QL + + +P L E++
Sbjct: 357 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTD 1548
D V+ + ++ ++ I + LL L +
Sbjct: 417 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 9e-16
Identities = 63/452 (13%), Positives = 144/452 (31%), Gaps = 33/452 (7%)
Query: 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135
L +L D A++ E + + L L N R ++
Sbjct: 2 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVAAGLQ 59
Query: 2136 IGYF-----------YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS- 2183
I Y+ L + A + ++ +++ ++A + ++ + +
Sbjct: 60 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 119
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPIFLQG 2237
+P P I + ++ E K+ + I L +L +QG
Sbjct: 120 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQG 179
Query: 2238 LIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295
+ S ++ A L +E T KE ++ +V+ A L
Sbjct: 180 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 239
Query: 2296 LSIIIRKGGIALKPFLPQLQTT-FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354
L I+ ++ ++ I+ ++ V + + +
Sbjct: 240 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 299
Query: 2355 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 2414
+ + + AL+ ++ + + + + DD + +A
Sbjct: 300 AEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKAAGVC 350
Query: 2415 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 2474
L +++ C ED + +L + +P W R +V+ F L P + PL + +
Sbjct: 351 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAM 409
Query: 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQS 2506
L +KD +R+ + +GR+ ++
Sbjct: 410 PTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 2e-10
Identities = 65/492 (13%), Positives = 133/492 (27%), Gaps = 53/492 (10%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRR 1940
E++ +L T+ S + A + L + L + +L+ A R
Sbjct: 1 ELITILEKTV-----SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--R 53
Query: 1941 QGVCIGLSEVMA---SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ + + K+Q + R + + +L+ +
Sbjct: 54 VAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE--------TYRP 105
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
A + + +Q + + + + P+ + L A
Sbjct: 106 SSASQCVAGIACAEIPVNQWPELIPQLVANVTN-------PNSTEHMKESTLEAIGYICQ 158
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
E N L I+ + +++ + + + + +
Sbjct: 159 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 218
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST----LIVLLSDSDSTTVAAA 2173
Q R + K LY M I +
Sbjct: 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 278
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233
E S V E ++ P F ALQ L+PI
Sbjct: 279 IEFWSNVCDEEMDLAI--------------EASEAAEQGRPPEHTSKFYAKGALQYLVPI 324
Query: 2234 FLQGLISGSAELREQ--AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
Q L + + + ++ ++P P I+ W+ + A
Sbjct: 325 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 384
Query: 2292 ILSTLSIIIRK-GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-------AL 2343
+ I+ LKP + Q T I+ ++D + VR +AA +G++
Sbjct: 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 444
Query: 2344 STRVDPLVGDLL 2355
+ PL+ L+
Sbjct: 445 DVYLAPLLQCLI 456
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 3e-07
Identities = 57/474 (12%), Positives = 130/474 (27%), Gaps = 60/474 (12%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267
++LP + L R LA+ R+ AG+ +N L K
Sbjct: 27 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGL----------------QIKNSLTSKD 68
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPL 1327
D + + D V + + S C++ +
Sbjct: 69 PDIK-------------AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 115
Query: 1328 MQS------MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+ + P LV+ + + A + + + + A
Sbjct: 116 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 175
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
++ + S + A A E E ++ ++ A VR A
Sbjct: 176 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235
Query: 1440 AECAARAMMS----QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495
A +MS + + ++ ++ ++ + +
Sbjct: 236 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 295
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
+ + ALQ + P + + D + +
Sbjct: 296 ASEAAEQGRPPEH-----TSKFYAKGALQYL-----VPILTQTLTKQDENDDDDDWNPCK 345
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ + + + ++P + ++ + A G + EP + P
Sbjct: 346 AAG-VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKP 403
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-----LVSWLLD 1664
+ +P + +++ DP VR AA +G + + E D L+ L++
Sbjct: 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (151), Expect = 5e-10
Identities = 98/806 (12%), Positives = 238/806 (29%), Gaps = 107/806 (13%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
+++ ++ AI S+ + +P L+S L L +D+ G +
Sbjct: 92 PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVT-NKGVLTVAHSI 150
Query: 1686 LAALGTVY---------------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
++ F ++++ Q + + ++
Sbjct: 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN---------NKASLNI 201
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
+ L ++ D + + + G + Y + S PLL E + +
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIK 261
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
++ S EL+ + G + V +L
Sbjct: 262 VKSSIQELVQLYTTRYEDVFGPMI-------NEFIQITWNLLTSISNQPKYDILVSKSLS 314
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS------------SLASSS 1898
+ + + + + T + + + + + S +
Sbjct: 315 FLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDT 374
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIP----ILSRGLKDPSASRRQGVCIGLSEVMASA 1954
RR+ L EL K V + + + + DPS + + +
Sbjct: 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAI 434
Query: 1955 GKS-------------QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001
+ ++ F + I T+ + +R A T +
Sbjct: 435 NGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL 494
Query: 2002 DEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGA 2059
E++P L L+ D+ A +++IL++R + P + + ++
Sbjct: 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNL 553
Query: 2060 LAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119
+A + G + L+ ++ V ++++ + + + + + +
Sbjct: 554 IALILKHGSSPEKLAENEFLMRSI----FRVLQTSEDSIQPLFPQL----LAQFIEIVTI 605
Query: 2120 GVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAW 2174
+ + ++ Y + + LVD T+ V
Sbjct: 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665
Query: 2175 EALSRVVASVPKEVQPSYIKVIRDAISTSRDK-------ERRKKKGGPILIPGFCLPKAL 2227
+ A++P+ ++P ++ + + + K + P L
Sbjct: 666 AFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------L 719
Query: 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI-RIIGDRFPW 2286
P+L IF Q LI+ A L L ++ + L+ ++ I L+ R+ +
Sbjct: 720 VPVLGIF-QRLIASKAYEVHGFDL-LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTER 777
Query: 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQ---------TTFIKCLQDSTRTV-RSSAALA 2336
VK + I + G L F+ ++Q I L + R A +
Sbjct: 778 YVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIG 837
Query: 2337 LGKL----SALSTRVDPLVGDLLSSL 2358
+ + ++ L+ ++S+
Sbjct: 838 VLNMVINGQFFQSKYPTLISSTMNSI 863
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.2 bits (142), Expect = 8e-09
Identities = 86/839 (10%), Positives = 228/839 (27%), Gaps = 92/839 (10%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + I+ + +++ A + + P LL + + ND+ +
Sbjct: 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGV 143
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+ + +FK + SD+ + + +
Sbjct: 144 LTVAHS-IFKRWRPLFR------SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196
Query: 1856 VSLSVRQAALHVWKTIV-----ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910
SL++ L V + + P+ ++ + V M L+ S+
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHA 256
Query: 1911 ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-------SQLLSFM 1963
++ K+ + + +R + + I + + + + + S+ LSF+
Sbjct: 257 SVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316
Query: 1964 DELIPTIRT-------ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016
+ + + ++I E + E + L + D
Sbjct: 317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDT 376
Query: 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076
D LK++ V L + + +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK--------------FK 422
Query: 2077 PALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
+ ++ + T L+ + ++ L +R + I
Sbjct: 423 DLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI 482
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
F + ++ L L + A + +++ ++ +
Sbjct: 483 YTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKIL-TIRESNTSPAFIFH 538
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 2256
++ IS L+ L+ + L+ S + +
Sbjct: 539 KEDISN-------------------STEILLKNLIALILKHGSSPEKLAENEFLMRSIFR 579
Query: 2257 IEVTSEQSLKEFVIPITGPLIRIIG----DRFPWQVKSAILSTLSIIIRKGGIALKP-FL 2311
+ TSE S++ + I I+ + + ++ I+ P +
Sbjct: 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV 639
Query: 2312 PQLQTTFIKCLQDSTRTVRSSAALALGKL----SALSTRVDPLVGDLLSSLQVSDAGIRE 2367
+ TF+ + + + + + + + PL LL+ G
Sbjct: 640 DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIP 699
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
A+ LK +K V + + + L+ V +L + ++ +L
Sbjct: 700 AVTRLLKSFIKTDSSIFPDLVPV--LGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRL 755
Query: 2428 ADLLQELL-----NLASSPSWAARHGSVLVFATF-LRHNPSAISM------SPLFLSILD 2475
++++ L +S + + F + + LF I
Sbjct: 756 RPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWG 815
Query: 2476 RLKSSLKDEKFP---LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSE 2531
+ R+ + + ++++ T++ + S++ S
Sbjct: 816 NFIIT-TLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIA 873
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (140), Expect = 1e-08
Identities = 70/670 (10%), Positives = 174/670 (25%), Gaps = 81/670 (12%)
Query: 1854 SDVSLSVRQAALHVWKTIVAN-------TPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906
+++ LS R A +K + + ++ ++ + S + + G
Sbjct: 47 TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIG 106
Query: 1907 RALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966
A+ + P+++ L+ L + +GV + +
Sbjct: 107 EAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166
Query: 1967 IPTIRTALCDSILEVRESA-GLAFSTLFKSAGMQAIDEIVPT---LLHALEDDQTSDTAL 2022
I + L + ++ + A + + +++ L + +
Sbjct: 167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226
Query: 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082
D ++ + + L L L +V + ++ +
Sbjct: 227 DNIQVGMGI-----FHKYLSYSNPLLEDPDETEHASVLIKVKS-----SIQELVQLYTTR 276
Query: 2083 MGDDDMD-VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141
D + + +T + ++ + LVS+ L + +
Sbjct: 277 YEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL-----------TAVTRIPKY 325
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201
N+ +I+ V +E + ++++ S R A +
Sbjct: 326 FEIFNNESAMNNITEQIILPNVTLREEDVEL-FEDDPIEY--IRRDLEGSDTDTRRRACT 382
Query: 2202 TSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE--LREQAALGLGELIEV 2259
+ + K + L + Q + S ++ L
Sbjct: 383 DFLKELKEKNEV-------LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN 435
Query: 2260 TSEQS-----------LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
+ + + +F P + AI I K
Sbjct: 436 GNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK----YIYTFRNQLTK 491
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368
L +L LQ V + AA+ + K+ + + E
Sbjct: 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST---EI 548
Query: 2369 ILTALKGVLKHAGKSVSSA-VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
+L L ++ G S + + ++ +D ++ +L Q
Sbjct: 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL---------AQF 599
Query: 2428 ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMS------PLFLSILDRLKSSL 2481
+++ + S+P H + L + P FL++
Sbjct: 600 IEIVTIMAKNPSNPR--FTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF 657
Query: 2482 KDEKFPLREA 2491
F +
Sbjct: 658 IPYVFQIIAF 667
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (107), Expect = 9e-05
Identities = 53/506 (10%), Positives = 147/506 (29%), Gaps = 52/506 (10%)
Query: 1232 VRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL 1291
R + + +K+ ++ + ++++ SD K ++ + ALA +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436
Query: 1292 AKDDPKVHAVVDKL-------------LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ V + + L L N P ++ + +
Sbjct: 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE 496
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVK----------GFGISSLKKY------GIAAT 1382
+ +L +++D+Y AA + ++ F + + A
Sbjct: 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---------SDQV 1433
+ + + E + + + + +P Q+L +
Sbjct: 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493
E+ Q V ++P+ L + Q++ + +
Sbjct: 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIP 676
Query: 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQ--TALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
P P L + + + + + + + S I + L + + +
Sbjct: 677 ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYE 736
Query: 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
+ L + P + + ++ + L+ E K + + S
Sbjct: 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796
Query: 1612 DMIPYI-----GLLLPEVKKVLVDPIPEV-----RSVAARAIGSLIRGMGE--ENFPDLV 1659
+I +I GL ++ +P + R +A + +++ +P L+
Sbjct: 797 FLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLI 856
Query: 1660 SWLLDALKSDNSNVERSGAAQGLSEV 1685
S ++++ S+ + ++
Sbjct: 857 SSTMNSIIETASSQSIANLKNDYVDL 882
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 0.001
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 9/164 (5%)
Query: 2317 TFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375
T K L +S + ++ L +L L+ +++S + R A K
Sbjct: 6 TVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLL-HVIASTNL-PLSTRLAGALFFKN 63
Query: 2376 VLKHAGKS------VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 2429
+K + + + + L+ ++++V + ++ +
Sbjct: 64 FIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPT 123
Query: 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 2473
LL +L + S+ G + V + + LFL I
Sbjct: 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI 167
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (132), Expect = 6e-08
Identities = 69/540 (12%), Positives = 145/540 (26%), Gaps = 75/540 (13%)
Query: 2076 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVE 75
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187
R +A + + + L I L+ +L + + A L +
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL------- 128
Query: 2188 VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELRE 2247
+ G + L L + L + +
Sbjct: 129 ---------------------------LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 2248 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307
L L E L L+ I+ ++ L ++
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIRE 2367
L D ++ + + L LS +T+ + + G L + +Q+ +
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 281
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV------------YHDDDHVRVSAASIL 2415
+ A + + + + + ++ LV S
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 2416 GIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR---HNPSAISMSPLFLS 2472
+L L ++ L PS + + L N + +
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401
Query: 2473 ILDRLKSSLKDEKF-------------PLREASTKALGRLLLHQIQSGPANTTVVV--DI 2517
++ L + +D + +R LH + N V+ +
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 461
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
+ V L+ ++R A L +A+ +A + L E L + V A
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 0.001
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 2477 LKSSLKDEKFPLREASTKALGRLLLHQ-IQSGPANTTVVVDILASVVSALHDDSSEVRRR 2535
L L DE + + + +L + + + +V + + + + E R
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARC 79
Query: 2536 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586
L +++ + + + PAL + L V A +
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 4e-05
Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 34/271 (12%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
L D R ++ AR L +G + + ++ DK + + +LG
Sbjct: 24 LFRLLDDHNSLKRISS---ARV----LQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544
+ + + L D V++ + Q +V +
Sbjct: 77 I-KICKKCEDNVFNILNNMA---LNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQI 131
Query: 1545 GLTDPNDHTKYS-------------LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
D + + + + + +L+ D + A +++ +
Sbjct: 132 TAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD 191
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ Q + +L + L V A G L
Sbjct: 192 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELGD--- 246
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
L+ L L + N + A L
Sbjct: 247 ----KTLLPVLDTMLYKFDDNEIITSAIDKL 273
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 44.1 bits (102), Expect = 1e-04
Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 48/311 (15%)
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QC +L +L D + + + LQ G V + +D N
Sbjct: 11 GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN 63
Query: 1551 DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ IL Q + +L + L ++SA + A + C
Sbjct: 64 YIRRDIGAFILGQIKICKKCEDNVFNIL---NNMALNDKSACVRATAIESTAQRCKKNPI 120
Query: 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669
I + D VR A A + N + L++ LK
Sbjct: 121 YSPKIVEQ------SQITAFDKSTNVRRATAFA-------ISVINDKATIPLLINLLKDP 167
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729
N +V I + N + V + ++
Sbjct: 168 NGDVRN----------------WAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG 211
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789
++VL + D L V D + A E T LP+L + D+
Sbjct: 212 LSYRKDKRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDN 263
Query: 1790 RIRQSSVELLG 1800
I S+++ L
Sbjct: 264 EIITSAIDKLK 274
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.002
Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 29/270 (10%)
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
EL + + D+ + R SSA ++ + + I SD +
Sbjct: 23 ELFRLLDDHNSLKRISSARVLQLR----------GGQDAVRLAIEFCSDKNYIRRDIGAF 72
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK---------KKGGPILIPG--FCLP 2224
L ++ + K+ + + ++ + + R K PI P
Sbjct: 73 ILGQIK--ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQ 130
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ + + ++A + L + ++ + D
Sbjct: 131 ITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR 190
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
V+ + I ++ + L+ + TV A G+L
Sbjct: 191 DCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELG--D 246
Query: 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALK 2374
+ P++ +L D I + + LK
Sbjct: 247 KTLLPVLDTMLYKFD--DNEIITSAIDKLK 274
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2629 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.97 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.96 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.96 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.6 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.59 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.41 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.3 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.21 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.16 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.97 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.95 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.74 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.72 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.71 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.59 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.79 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.78 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.72 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.29 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.5 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.47 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.09 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.12 | |
| d2b6ca1 | 213 | Hypothetical protein EF3068 {Enterococcus faecalis | 83.6 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-40 Score=500.79 Aligned_cols=1016 Identities=16% Similarity=0.189 Sum_probs=724.7
Q ss_pred ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH----HHHHHHhcc----cccc
Q 000049 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTT----FVNT 1568 (2629)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~----al~~L~~~~----~~~~ 1568 (2629)
...+++.++..|+|++++||..|++||+.++..++++.+..+++.|+..+.+++...|. ++..+...- ....
T Consensus 43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~ 122 (1207)
T d1u6gc_ 43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122 (1207)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccch
Confidence 35689999999999999999999999999999998888899999999988888777663 344433211 1111
Q ss_pred CChhhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1569 VDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
........+++.+...+. ..++.+|..+.++++.+....+. .+.++.+.+++.+...+.++.+.||..|+.+++.++
T Consensus 123 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~--~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~ 200 (1207)
T d1u6gc_ 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 200 (1207)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH--hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 223344555666665554 45788999999999999987654 678899999999999999999999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhh
Q 000049 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2629)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~ 1724 (2629)
..++++.+..+++.+++.+..+.....|..++++++.++...|.. +++.++|.+++.+.+.+..+|+.++.++..+.
T Consensus 201 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~ 280 (1207)
T d1u6gc_ 201 MSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 280 (1207)
T ss_dssp TTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999988889999999988877665657788899999999988865 34788999999999999999999999999999
Q ss_pred hhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHH
Q 000049 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2629)
Q Consensus 1725 ~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~ 1804 (2629)
..++..+.||+..+++.++.++.++.................. .........+.......|..|++|..++++++.++.
T Consensus 281 ~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~ 359 (1207)
T d1u6gc_ 281 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD-GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 359 (1207)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC-------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhh-ccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHH
Confidence 9999999999999999999998865443332222222211111 111122233444455678899999999999998874
Q ss_pred hhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh--------
Q 000049 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-------- 1876 (2629)
Q Consensus 1805 ~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-------- 1876 (2629)
..+. . +. +....+++.+...+.|.+..||..+..++..+....+
T Consensus 360 ~~~~--------------~---------l~-----~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 411 (1207)
T d1u6gc_ 360 TRHE--------------M---------LP-----EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411 (1207)
T ss_dssp TCCT--------------T---------HH-----HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHH--------------H---------HH-----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 3210 0 00 1223355666666788889999999999988765321
Q ss_pred -----------hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCC--ChhHH
Q 000049 1877 -----------KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP--SASRR 1940 (2629)
Q Consensus 1877 -----------~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~--~~~vR 1940 (2629)
..+..+++.+++.+...+.+.+..+|..+..++..++...+.. ..+.+++.+...+.+. ...+|
T Consensus 412 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~ 491 (1207)
T d1u6gc_ 412 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLK 491 (1207)
T ss_dssp ------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHH
T ss_pred hHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHH
Confidence 2245677888899999999999999999999999999887764 4556666676777654 45678
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----------hhhhhHHHHHH
Q 000049 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----------AIDEIVPTLLH 2010 (2629)
Q Consensus 1941 ~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~----------~~~~ilp~Ll~ 2010 (2629)
..++..++.++..+.+..+.++...+.+.+...+.|+.+.++..|..+++.+....++. .+..+++.++.
T Consensus 492 ~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 571 (1207)
T d1u6gc_ 492 IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 571 (1207)
T ss_dssp HHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHH
Confidence 88999999999888888889999999999999999999999999999998888766531 12333444444
Q ss_pred hccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHH
Q 000049 2011 ALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDV 2090 (2629)
Q Consensus 2011 ~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~v 2090 (2629)
.+.+.+.+.. .......+++.+....|..+.++++.+++.+.+.+.++. .
T Consensus 572 ~l~~~~~~~e----------------------------~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~ 621 (1207)
T d1u6gc_ 572 RLKAADIDQE----------------------------VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--T 621 (1207)
T ss_dssp HHSCSSSCHH----------------------------HHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--H
T ss_pred HHHhcccchH----------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchh--h
Confidence 4433221100 011233456666666788888899999999999887654 5
Q ss_pred HHHHHHHHHHHHhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHhcCC
Q 000049 2091 QSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDS 2165 (2629)
Q Consensus 2091 r~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~-~~~~il~~Ll~ll~d~ 2165 (2629)
|..+..++..+...... +.+..+++.+...+.+.++.+|..++.+++.++...+....+ ....++..+..++.+.
T Consensus 622 r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~ 701 (1207)
T d1u6gc_ 622 RLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 701 (1207)
T ss_dssp HHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccc
Confidence 66677777777654332 346778888888899999999999999999998876655443 3456667777788899
Q ss_pred ChhHHHHHHHHHHHHHhhcCcc---cccchHHHHHHHHhhhhhh-hhhhhcCCc-ccccCCCCc-ccchhhHHHHHHHHh
Q 000049 2166 DSTTVAAAWEALSRVVASVPKE---VQPSYIKVIRDAISTSRDK-ERRKKKGGP-ILIPGFCLP-KALQPLLPIFLQGLI 2239 (2629)
Q Consensus 2166 d~~V~~~a~~aL~~l~~~~~~~---~l~~l~~~l~~~l~~~~~~-~~~~~~~~~-~~l~g~~l~-k~l~~ilp~ll~~L~ 2239 (2629)
+..++..+..++..+.+..+.. ....+++.+...+...... ......... ..+.....+ .....+++.+...+.
T Consensus 702 d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~ 781 (1207)
T d1u6gc_ 702 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVY 781 (1207)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTT
T ss_pred cHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Confidence 9999999999999998766542 2333444333333221000 000000000 000000001 111222332222222
Q ss_pred cC-----CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHh-cCCCCHhHHHHHHHHHHHHHHhcCCCccCchHH
Q 000049 2240 SG-----SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII-GDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2629)
Q Consensus 2240 ~~-----~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l-~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~ 2313 (2629)
+. ........+.+++.+....+ ....+.+..+ +... .....+..+..++.+++.++...+. .+.+.
T Consensus 782 ~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~l~~~----l~~~~~~~~~~~~~~~al~~Lge~~~~~~~---~~~~~ 853 (1207)
T d1u6gc_ 782 SQSTALTHKQSYYSIAKCVAALTRACP-KEGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGHHIDL---SGQLE 853 (1207)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSC-CCSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHHHSCC---CSCTH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH----HHHHhcccchHHHHHHHHHHHHHHHHhccc---cchHH
Confidence 21 23344456778888777666 3333333222 2222 2334577889999999999988775 34567
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHH
Q 000049 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 2393 (2629)
Q Consensus 2314 L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~ 2393 (2629)
+...+++.+.++++++|..|+.+||.++. .+.+.++|.++..+.. ++..+...++++++++...+.....++.+.+|
T Consensus 854 l~~~l~~~l~~~~~~vr~aAa~aLg~l~~--~~~~~~lp~il~~l~~-~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~ 930 (1207)
T d1u6gc_ 854 LKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVGLKPYVENIW 930 (1207)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH--hhHHHHhHHHHHHHhc-CchHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 88899999999999999999999999865 4567889999888865 45678889999999999888776789999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhH---------------------------------HHHHHH----HHHh
Q 000049 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ---------------------------------LADLLQ----ELLN 2436 (2629)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---------------------------------~~~~l~----~ll~ 2436 (2629)
..+...+.+.++.+|..+++|+|+|+...|..- +.++++ .++.
T Consensus 931 ~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~ 1010 (1207)
T d1u6gc_ 931 ALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLK 1010 (1207)
T ss_dssp HHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999976554321 122222 2344
Q ss_pred hcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhh------------------hcCCChhHHHhHHHHhHH
Q 000049 2437 LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS------------------LKDEKFPLREASTKALGR 2498 (2629)
Q Consensus 2437 ~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~------------------~~~~~~~ir~~a~~alg~ 2498 (2629)
.+.+++...|..++.+++.++...|..+. ++.+.+++.+... ..|++.++|++|..+++.
T Consensus 1011 ~l~d~~~~vR~~al~~l~~~~~~~p~li~--~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~ 1088 (1207)
T d1u6gc_ 1011 TLEDPDLNVRRVALVTFNSAAHNKPSLIR--DLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYT 1088 (1207)
T ss_dssp HHSSSSTHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHH
Confidence 55677888888888899999888876543 5677888888743 345778899999999999
Q ss_pred HHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcC--Ccch----
Q 000049 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTP---- 2572 (2629)
Q Consensus 2499 ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~---- 2572 (2629)
++..+..+ .++.+++..++.|+.| +.|+|.++..++..++..+|..+.++++.++|++.+.+.. +...
T Consensus 1089 ~l~~~~~~-----~~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~ 1162 (1207)
T d1u6gc_ 1089 LLDSCLDR-----LDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQE 1162 (1207)
T ss_dssp HHHSSCSS-----SCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHH
T ss_pred HHHHhhhh-----cCHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccCcchhhhh
Confidence 99887643 3578899999999998 5799999999999999999999999999999999888633 2222
Q ss_pred ------hhhhHHHHHHHHhccccCch
Q 000049 2573 ------VRLAAERCAVHAFQLTRGSE 2592 (2629)
Q Consensus 2573 ------vk~aae~a~~~l~~~~~~~~ 2592 (2629)
.++++.||+.+|.+++..+.
T Consensus 1163 ~e~~~e~~~~~~~~~~~l~~~~~~~~ 1188 (1207)
T d1u6gc_ 1163 FEKQDELKRSAMRAVAALLTIPEAEK 1188 (1207)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCSS
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 45566688888988866543
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-36 Score=456.18 Aligned_cols=1114 Identities=16% Similarity=0.179 Sum_probs=762.7
Q ss_pred hHHHHHHH-HHHHHHhh-hccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-hHHHHHHHHHHhhcCCC
Q 000049 1275 LVREGVVI-FTGALAKH-LAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDK 1351 (2629)
Q Consensus 1275 ~vr~~~v~-~~~~La~~-l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-~~~ll~~ll~~L~~~~~ 1351 (2629)
.+|-.|.. +...+.+. +..++...+.+++.+++.|.|++++||..+.+|+++++...++. ...+++.++..+... +
T Consensus 18 d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~-~ 96 (1207)
T d1u6gc_ 18 DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSD-K 96 (1207)
T ss_dssp HHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCS-S
T ss_pred hHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCC-c
Confidence 37765543 33333221 11223446689999999999999999999999999999887654 356777777777654 4
Q ss_pred HHHHHHHHHHHHHHHhhhCcchh----h---hhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Q 000049 1352 YGERRGAAFGLAGVVKGFGISSL----K---KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~l----~---~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ 1424 (2629)
+..|..++.+|..++..++.... . ...+++.+...+.+.+++..|..++.+++.+...+|..+.++...+++.
T Consensus 97 ~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~ 176 (1207)
T d1u6gc_ 97 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTC 176 (1207)
T ss_dssp SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Confidence 68899999999999987754221 1 1246666777777777899999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhc-cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHH
Q 000049 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2629)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~ 1503 (2629)
++..+.++++.||+.|..++..++..++...+..+++.+++.+. +.++..++.++.+++.++...|..+.++++.++|.
T Consensus 177 l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 256 (1207)
T d1u6gc_ 177 LLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL 256 (1207)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHH
Confidence 99999999999999999999999998888877888999988875 45678888999999999999999999999999999
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccC-CCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~-d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
++..+++.++++|+.+..++..++..+++ +++..+++.+++.+. ||+............ .............+
T Consensus 257 l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 333 (1207)
T d1u6gc_ 257 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA---MDADGGDDDDQGSD 333 (1207)
T ss_dssp HHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------------------
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhh---hhhhccchhhhhHH
Confidence 99999999999999999999999988764 567788888877775 443322211111110 00001111122233
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll 1659 (2629)
.......+.+|.+|+.++++++.++.. .++.+.+++..++|.+...+.|+++.||..+..+++.+....+........
T Consensus 334 ~~~~~~~d~s~~vR~~a~~~L~~l~~~--~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 411 (1207)
T d1u6gc_ 334 DEYSDDDDMSWKVRRAAAKCLDAVVST--RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411 (1207)
T ss_dssp --------CTTHHHHHHHHHHHHHHTT--CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHhhhhhhhHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 333445678999999999999999874 445778889999999999999999999999999999998876543211111
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHH
Q 000049 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2629)
Q Consensus 1660 ~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii 1739 (2629)
+.... ..... +. ...+..+.+++.+.+.+.+.++.+|..++.++..+...++..+.+|+..++
T Consensus 412 ~~~~~---~~~~~--~~------------~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~ 474 (1207)
T d1u6gc_ 412 PDAME---QGETP--LT------------MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 474 (1207)
T ss_dssp ---------CCCH--HH------------HHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred hHHHH---hhcch--HH------------HHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhH
Confidence 11111 00101 00 001123455666777778889999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--hhHHHHHHHHHHHHHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccc
Q 000049 1740 PAILDGLADEN--ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2629)
Q Consensus 1740 ~~ll~~L~d~~--~~VR~~al~al~~iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~ 1813 (2629)
+.+...+.+.. ..+|..++..+..++...... .+..+.|.+...+.+..++++..++..++.+...+.......
T Consensus 475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~ 554 (1207)
T d1u6gc_ 475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS 554 (1207)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccch
Confidence 99999998754 457888888888887766544 334577888888899999999999999988876654321100
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhh--ccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHH
Q 000049 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2629)
Q Consensus 1814 ~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~ 1891 (2629)
...... ....++..+... ..|.+.++|..|+.+++.+..+.+..+.+.++.+++.+.
T Consensus 555 ---------~~~~~~------------~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~ 613 (1207)
T d1u6gc_ 555 ---------SFDATP------------YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613 (1207)
T ss_dssp ---------CCCCHH------------HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHH
T ss_pred ---------hhhhHH------------HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 000000 111222222222 356778899999999999999888888888999999998
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHH
Q 000049 1892 SSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2629)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll 1967 (2629)
..+.+.. .|..+..++..+...... ..++.+++.+...+.+.++.+|..++.++..++...++.........++
T Consensus 614 ~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l 691 (1207)
T d1u6gc_ 614 ERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 691 (1207)
T ss_dssp HHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHhcchh--hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHH
Confidence 8887644 678888888877654332 2456778888888999999999999999999988876654455667777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhh
Q 000049 1968 PTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2629)
Q Consensus 1968 ~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2629)
+.+...+.+.+..++..+...++.+....+. .....+++.++..+.++.....++..+..++..
T Consensus 692 ~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~------------- 758 (1207)
T d1u6gc_ 692 DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA------------- 758 (1207)
T ss_dssp TTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHH-------------
T ss_pred HhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH-------------
Confidence 7778888999999999999888887665433 234556777776666554444443333332210
Q ss_pred hcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCC-----CHHHHHHHHHHHHHHHhhcccccHHHHHHHHHh
Q 000049 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-----DMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119 (2629)
Q Consensus 2045 ~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~-----~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~ 2119 (2629)
+.. .+. -......+++.+.....+. ..........+++.+....+. .....+..++.
T Consensus 759 ---------------l~~-~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~l~~~l~ 820 (1207)
T d1u6gc_ 759 ---------------LVV-TGT-NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQFIQ 820 (1207)
T ss_dssp ---------------HHT-TCC-TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTTTTT
T ss_pred ---------------HHh-ccc-cccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHH
Confidence 000 000 0111222333333333221 122233344455555444333 23344444444
Q ss_pred hcC--CCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHH
Q 000049 2120 GVG--DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2629)
Q Consensus 2120 ~l~--d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~ 2197 (2629)
... +..+..|..++.++|.+....+... .+++...++..+++++++||.+|..+++.+......
T Consensus 821 ~~~~~~~~~~~~~~al~~Lge~~~~~~~~~---~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~----------- 886 (1207)
T d1u6gc_ 821 DVKNSRSTDSIRLLALLSLGEVGHHIDLSG---QLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP----------- 886 (1207)
T ss_dssp TTTTTTCCHHHHHHHHHHHHHHHHHSCCCS---CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH-----------
T ss_pred HHhcccchHHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHH-----------
Confidence 443 2446788899999999887655433 235667778889999999999999999987643322
Q ss_pred HHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHH
Q 000049 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2629)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li 2277 (2629)
..+|.+++.+.+. +..+...+.++..++...+...+.+
T Consensus 887 -------------------------------~~lp~il~~l~~~-~~~~~~ll~al~ei~~~~~~~~~~~---------- 924 (1207)
T d1u6gc_ 887 -------------------------------EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKP---------- 924 (1207)
T ss_dssp -------------------------------HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHH----------
T ss_pred -------------------------------HHhHHHHHHHhcC-chHHHHHHHHHHHHHHhcchhhhHH----------
Confidence 2334444444322 2334445556666655544333333
Q ss_pred HHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHh
Q 000049 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357 (2629)
Q Consensus 2278 ~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~ 2357 (2629)
+.+++++.+.+.+.++++.+|..++.|||+++...| ..++|.|...
T Consensus 925 --------------------------------~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~--~~~lp~L~~~ 970 (1207)
T d1u6gc_ 925 --------------------------------YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGY 970 (1207)
T ss_dssp --------------------------------HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTT
T ss_pred --------------------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHHH
Confidence 344455555556667778899999999999976543 5688888888
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChh---HHHHHHHHH
Q 000049 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQEL 2434 (2629)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~l 2434 (2629)
+.++++.+|..++.+++.++...+..+ .++...++..+...+.|++..+|..|..+++.+++..|.- .+..+++.+
T Consensus 971 l~~~~~~~r~~ai~~l~~~~~~~~~~~-~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l 1049 (1207)
T d1u6gc_ 971 LISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049 (1207)
T ss_dssp SSSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 888899999999999999988777665 6788888888888999999999999999999999887742 344455554
Q ss_pred HhhcC------------------CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHh
Q 000049 2435 LNLAS------------------SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKAL 2496 (2629)
Q Consensus 2435 l~~~~------------------~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~al 2496 (2629)
.+... ++.-..|..++.+++.++..+.+.+. ..++.+.+..++.|+ ..||.-+...+
T Consensus 1050 ~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~----~~~~~~~~~~gl~d~-~di~~~~~~~l 1124 (1207)
T d1u6gc_ 1050 YNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD----IFEFLNHVEDGLKDH-YDIKMLTFLML 1124 (1207)
T ss_dssp HHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC----HHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred HHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcC----HHHHHHHHHhcccch-HHHHHHHHHHH
Confidence 43211 12334677888899999987776542 346778888888885 58999999999
Q ss_pred HHHHhhhhhcCCCCchhhHHHHHHHHhh----cCCCC--------HHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHh
Q 000049 2497 GRLLLHQIQSGPANTTVVVDILASVVSA----LHDDS--------SEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 2564 (2629)
Q Consensus 2497 g~ll~~~~~~~~~~~~~l~~~l~~l~~~----l~~~~--------~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~ 2564 (2629)
.+++..+... ....+..++++|-.- ++++. .|.+|.++.++..+.+..+....|+++.++..+.+
T Consensus 1125 ~~l~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1201 (1207)
T d1u6gc_ 1125 VRLSTLCPSA---VLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISS 1201 (1207)
T ss_dssp HHHHHSCCHH---HHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCCCHHHHH
T ss_pred HHHHHhCcHH---HHHHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHHcCCCcccChHHHHHHHHHHh
Confidence 9887765421 012344455544443 45544 77889999999999764344456666666655443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.1e-29 Score=343.15 Aligned_cols=566 Identities=19% Similarity=0.236 Sum_probs=432.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
..+..+++.|.+ ++..+|..|+..|+.++..+|++... ..++|++.+.++++ ..++.++...++.+....|. ..
T Consensus 10 ~~i~~l~~~l~~-~~~~~R~~a~~~l~~ia~~lg~~~~~-~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~--~~ 83 (588)
T d1b3ua_ 10 YPIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGG--PE 83 (588)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTS--GG
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCC--hh
Confidence 345566677654 56899999999999999999987764 37999999988764 34554444444443332221 23
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCCh-hhhHHHHHHHHHHHhhCchhhhh
Q 000049 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w-~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
++..++|.+...+.++++.||++|..++..+....+++.+...+.+++..|.+++| ..|..++.+++.++.......
T Consensus 84 ~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~-- 161 (588)
T d1b3ua_ 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-- 161 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH--
Confidence 56678898889999999999999999999999999988887666667777766666 557777777777765443332
Q ss_pred hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhh
Q 000049 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2629)
...+++.+..+++|.++.||.+|+.+++.+++.++.+... .
T Consensus 162 -~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~--------------------------------------~ 202 (588)
T d1b3ua_ 162 -KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK--------------------------------------S 202 (588)
T ss_dssp -HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------------H
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHH--------------------------------------H
Confidence 3557788888999999999999999999999877643321 2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-
Q 000049 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2629)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~- 1654 (2629)
.++|.+...++|.++.+|..+..+++.++...+. ..+...++|.+...+.|+++.||..++.+++.++..++.+.
T Consensus 203 ~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~ 278 (588)
T d1b3ua_ 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT 278 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhh
Confidence 2344455555566667777777777777665432 22345577888888888888888888888888887777553
Q ss_pred chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh-----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc
Q 000049 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2629)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~ 1729 (2629)
...++|.+...+.+. ...+|..++..++.++..++.. .++.++|.+...+.+.++.+|..+..++..++..+|.
T Consensus 279 ~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~ 357 (588)
T d1b3ua_ 279 KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357 (588)
T ss_dssp HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH
T ss_pred hhhhhHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch
Confidence 345667666666544 3557888888888887776643 3467888888899999999999999999988888876
Q ss_pred chHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcC
Q 000049 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2629)
Q Consensus 1730 ~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~ 1808 (2629)
..+.+.++|.+...+.|+++++|..+..++..+...++.. ..+.++|.+.+.+.|.+|++|.++++.++.+....
T Consensus 358 --~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~-- 433 (588)
T d1b3ua_ 358 --DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL-- 433 (588)
T ss_dssp --HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--
T ss_pred --hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc--
Confidence 3567788999999999999999999999998888877654 34668999999999999999999999988875432
Q ss_pred CCccccccCCCCCCcccHHHHHHHHHHHhchhhH-HHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHH
Q 000049 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2629)
Q Consensus 1809 ~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~-~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll 1887 (2629)
|.+.+ +.+.+.+...+.|....||.+|+.+++.++...+.. ...+.++
T Consensus 434 -----------------------------~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~--~~~~~i~ 482 (588)
T d1b3ua_ 434 -----------------------------GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATII 482 (588)
T ss_dssp -----------------------------CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTH
T ss_pred -----------------------------ChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH--HHHHHHH
Confidence 22211 233444555678999999999999999998865542 3456677
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHH
Q 000049 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2629)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2629)
+.+...+.++++..|..+..+++.+...++.. +.+.++|.+.+.+.|+.++||.+++.+++.+....+... +...+
T Consensus 483 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---~~~~i 559 (588)
T d1b3ua_ 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEV 559 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---HHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---HHHHH
Confidence 88888899999999999999999999887765 567899999999999999999999999998866655433 33567
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000049 1967 IPTIRTALCDSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1967 l~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2629)
.|.+...+.|+|.+||..|.+|++.+
T Consensus 560 ~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 560 KPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88888889999999999999999865
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-30 Score=374.14 Aligned_cols=743 Identities=14% Similarity=0.144 Sum_probs=504.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCCCC
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~~~ 1128 (2629)
+++.++|++++|||+++|++|+++|++.... |....++..+.....+.+..+|.+|. ..|...+.+.
T Consensus 11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~-----p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~ 85 (888)
T d1qbkb_ 11 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY-----PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85 (888)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTSTTTSTTS-----TTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 4677889999999999999999999986421 22334455555554556666777753 5798777666
Q ss_pred CCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh
Q 000049 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2629)
Q Consensus 1129 ~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~ 1206 (2629)
++.+ ..++..|.+++..+|+.++.+++.++. .+|+.|++++..+.+... ..++..|+++..+++.+++
T Consensus 86 ~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~----------s~~~~~~~~al~~L~~i~e 155 (888)
T d1qbkb_ 86 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD----------SEDYNTCEGAFGALQKICE 155 (888)
T ss_dssp CHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSST----------GGGSSCSSSSSTTTHHHHG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHHHH
Confidence 6666 888999999999999999999999875 345556665555553311 1234678888888888876
Q ss_pred hc----CCC----ChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc---cchhhhHHHHHHHhcccCCChhhhhh
Q 000049 1207 VL----RTK----DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2629)
Q Consensus 1207 ~~----~~~----~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~---~~~~~Ll~~~~~~l~~~~~~~~~~~~ 1275 (2629)
.. ..+ ..+.+++.++ .++.++++.+|..++.+...++...+. ..+..+++.+...... .+..
T Consensus 156 ~~~~~~~~~~~~~~~~~ll~~ll-~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~ 228 (888)
T d1qbkb_ 156 DSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGD------EEPE 228 (888)
T ss_dssp GGHHHHHTC---CCSTTTTHHHH-TGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSC------CCSS
T ss_pred HhHHHhhHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCC------cchH
Confidence 32 222 2233444443 566788888999999887776654432 2334555544333322 2345
Q ss_pred HHHHHHHHHHHHHhhh-ccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhh------ccchHHHHHHH------
Q 000049 1276 VREGVVIFTGALAKHL-AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM------QDEAPTLVSRL------ 1342 (2629)
Q Consensus 1276 vr~~~v~~~~~La~~l-~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~------~~~~~~ll~~l------ 1342 (2629)
+|..++..++.+.... +...+++..+++.++..+++++++|+..+.+.+..+.... ....+.+++.+
T Consensus 229 vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~ 308 (888)
T d1qbkb_ 229 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308 (888)
T ss_dssp STTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 7888877777766533 3336788889999999999999999988876543332110 00000000000
Q ss_pred -----------------------------------------------HHHhhc------CCCHHHHHHHHHHHHHHHhhh
Q 000049 1343 -----------------------------------------------LDQLMK------SDKYGERRGAAFGLAGVVKGF 1369 (2629)
Q Consensus 1343 -----------------------------------------------l~~L~~------~~~~~~R~~Aa~~L~~l~~~l 1369 (2629)
.....+ ..+|..|+.++.+|..++...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~ 388 (888)
T d1qbkb_ 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY 388 (888)
T ss_dssp SSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC
T ss_pred chHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh
Confidence 000000 124678999999999998888
Q ss_pred CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000049 1370 GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2629)
Q Consensus 1370 g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~ 1449 (2629)
|...+. .+++.+.+.+.+. +|..|++|+++|+.+++++.+.+.+++.+++|.++..+.|+++.||.++..+++.++.
T Consensus 389 ~~~il~--~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 465 (888)
T d1qbkb_ 389 RDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465 (888)
T ss_dssp CSSSHH--HHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHH--HHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 877664 6889999999877 8999999999999999998888899999999999999999999999998777766633
Q ss_pred hhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
... +.....++..+++.++..+.|+++.||.+|+.||..+.+.
T Consensus 466 ~~~-------------------------------------~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~ 508 (888)
T d1qbkb_ 466 WVV-------------------------------------SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 508 (888)
T ss_dssp HHH-------------------------------------SSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred Hhh-------------------------------------hhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 211 1222345678889999999999999999999999999876
Q ss_pred cCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1530 IKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1530 ~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
.++ |++..+++.+...+.+.+ .+.+..+.++++.++..
T Consensus 509 ~~~~l~p~~~~il~~l~~~l~~~~---------------------------------------~~~~~~~~~al~~l~~~ 549 (888)
T d1qbkb_ 509 ACTELVPYLAYILDTLVFAFSKYQ---------------------------------------HKNLLILYDAIGTLADS 549 (888)
T ss_dssp HTTSSGGGHHHHHHHHHHHTTTCC---------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhh---------------------------------------HHHHHHHHHHHHHHHHh
Confidence 553 455555555555554433 34444455555555554
Q ss_pred cCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCCCch---hhHHHHHHHhc------------c-
Q 000049 1607 VTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALK------------S- 1668 (2629)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~g~~~~~---~ll~~Ll~~L~------------~- 1668 (2629)
++..-.-.+|.+.+++.+...... .+...+.....+++.++...|+...+ .+++.++..+. .
T Consensus 550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 629 (888)
T d1qbkb_ 550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 629 (888)
T ss_dssp HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 433222245677777777766541 22234456788899998888876322 22222222111 0
Q ss_pred ---CCChHHHHHHHHHHHHHHHhhChhH---H--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1669 ---DNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1669 ---~~~~~~R~~a~~~L~~i~~~~g~~~---l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
.........+...++.++..+|... . ..+++.+...+.+.++.+|+.++.+++.++..++..+.||++.+++
T Consensus 630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~ 709 (888)
T d1qbkb_ 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMP 709 (888)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1112223345566777887777642 2 2467788888999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCC
Q 000049 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2629)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~e 1820 (2629)
.+...+.++...++.++..+++.++..++... ..
T Consensus 710 ~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~-~p--------------------------------------------- 743 (888)
T d1qbkb_ 710 ILGTNLNPEFISVCNNATWAIGEISIQMGIEM-QP--------------------------------------------- 743 (888)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGG-GG---------------------------------------------
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHh-hh---------------------------------------------
Confidence 99999998888888888888777766554321 00
Q ss_pred CCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc--cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC-C
Q 000049 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-S 1897 (2629)
Q Consensus 1821 de~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~ 1897 (2629)
+.+.+++.+...+ .+....|++.++.+++.+....|..+.++++.+++..+..+.. .
T Consensus 744 --------------------y~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~ 803 (888)
T d1qbkb_ 744 --------------------YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR 803 (888)
T ss_dssp --------------------GSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC
T ss_pred --------------------hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC
Confidence 1111222222111 2344568888999999999999999999999999998888875 4
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc--CCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHH
Q 000049 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL--KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L--~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2629)
+.+.+..|...+..+++.-+..+.+.+..++.... .++.++++...+..|.......+++.+..++.++
T Consensus 804 d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~ 874 (888)
T d1qbkb_ 804 DNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQF 874 (888)
T ss_dssp CSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcC
Confidence 55668889999999998777666666554444333 3456788888877777665555554444444333
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2e-28 Score=353.03 Aligned_cols=758 Identities=14% Similarity=0.140 Sum_probs=537.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhc---cccccCChhhhhhHHHHHHHhhc
Q 000049 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLR 1586 (2629)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~---~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2629)
+++..+|+.|.+.|.++.. .|++..++..++....+++..+|.+...+.+. .....++......+.+.+.+++.
T Consensus 22 s~d~~~r~~A~~~L~~~~~---~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik~~ll~~l~ 98 (888)
T d1qbkb_ 22 SPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG 98 (888)
T ss_dssp HHHHHHHHHHTTSTTTSTT---STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHc
Confidence 3457899999988887743 35555555555555566666677432222221 12234556677788899999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC--------CCCchhh
Q 000049 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--------EENFPDL 1658 (2629)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g--------~~~~~~l 1658 (2629)
+.+..+|..++.+++.++.. .. ...++.++|.+.+.+.++++.+|..+..+++.+++..+ ......+
T Consensus 99 ~~~~~vr~~~~~~i~~i~~~-~~----~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~l 173 (888)
T d1qbkb_ 99 DSSPLIRATVGILITTIASK-GE----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 173 (888)
T ss_dssp CCCSSTTTTTTTTTHHHHTT-TS----SCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHH-hC----ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 99999999999999999874 22 23467788888888888888889999999998876432 1245678
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l 1735 (2629)
+|.+++.+.++.. .+|..++.++..++...+.. .++.+++.+.....++++.+|..++.++..+....++.+.||+
T Consensus 174 l~~ll~~~~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l 252 (888)
T d1qbkb_ 174 IPKFLQFFKHSSP-KIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 252 (888)
T ss_dssp THHHHTGGGSSSS-CSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTT
T ss_pred HHHHHHHhhCCCH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999888876553 46778888887776554432 4678889999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-----hhchhhhHHHHHhhccCCCchHHHHHHHHHHHH-----HHHh
Q 000049 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD-----LLFK 1805 (2629)
Q Consensus 1736 ~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~-----~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~-----ll~~ 1805 (2629)
+.+++.++..+.|+++++|..|++.+..+++.. -...++.++|.+...+....+.+.......... ....
T Consensus 253 ~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (888)
T d1qbkb_ 253 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQD 332 (888)
T ss_dssp TTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGG
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHH
Confidence 999999999999999999988877665544321 112344566666666655555443211100000 0000
Q ss_pred hcCCCccc----------ccc-------CCCCCC---cccHHHHHH----HHHHHhchhhHHHHHHHHHhhccCccHHHH
Q 000049 1806 VAGTSGKA----------LLE-------GGSDDE---GASTEAHGR----AIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2629)
Q Consensus 1806 ~~~~~~k~----------~~~-------~~~ede---~~~~~~~~~----~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR 1861 (2629)
+.+..... ... +..+++ ......... .+....|.+....+++.+...+.+.++.+|
T Consensus 333 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~r 412 (888)
T d1qbkb_ 333 IRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 412 (888)
T ss_dssp CCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHH
Confidence 00000000 000 000000 011111111 112233444556667777677888999999
Q ss_pred HHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCCh
Q 000049 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSA 1937 (2629)
Q Consensus 1862 ~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~ 1937 (2629)
++|+.+++.++.+.++.+.++++.+++.++..+.++++.+|..+++++++++....+. ....+++.+...+.|+++
T Consensus 413 eaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~ 492 (888)
T d1qbkb_ 413 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 492 (888)
T ss_dssp HHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCH
T ss_pred HHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCH
Confidence 9999999999998888899999999999999999999999999999999998766443 456788888888999999
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-----hhhhHHHHHHhc
Q 000049 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHAL 2012 (2629)
Q Consensus 1938 ~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~-----~~~ilp~Ll~~L 2012 (2629)
.++.++|.++..++...+ ..+.+|++.+++.+...+.+.+...+..+..+++.+....|... .+.++|.+++..
T Consensus 493 ~V~~~a~~al~~l~~~~~-~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 571 (888)
T d1qbkb_ 493 RVQEAACSAFATLEEEAC-TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 571 (888)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 999999999999887665 45788999999999999999988888888899999988776533 333444444433
Q ss_pred cCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhc---------
Q 000049 2013 EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM--------- 2083 (2629)
Q Consensus 2013 ~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L--------- 2083 (2629)
..-.... +.......+++.++...|..+.+|...+++.+++.+
T Consensus 572 ~~~~~~~----------------------------~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 623 (888)
T d1qbkb_ 572 NMLKDED----------------------------KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML 623 (888)
T ss_dssp TTSCTTC----------------------------TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcccch----------------------------HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2111000 000011234445555556666666555444433321
Q ss_pred --------CCCCHHHHHHHHHHHHHHHhhccccc---H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhh
Q 000049 2084 --------GDDDMDVQSLAKEAAETVTLVIDEEG---V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE 2150 (2629)
Q Consensus 2084 --------~~~~~~vr~~a~~al~~l~~~~~~~~---~--~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~ 2150 (2629)
...+......+...++.++...+... + ..+++.+...+.+.++.+|+.|..++|.++...+..+.+|
T Consensus 624 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~ 703 (888)
T d1qbkb_ 624 NNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC 703 (888)
T ss_dssp HHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 12334555556666666665554321 1 2367778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhh
Q 000049 2151 APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPL 2230 (2629)
Q Consensus 2151 ~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~i 2230 (2629)
++.+++.+...+++++..|+.++..+++.++...+.+.. .++..+
T Consensus 704 l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~-----------------------------------py~~~i 748 (888)
T d1qbkb_ 704 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ-----------------------------------PYIPMV 748 (888)
T ss_dssp HHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGG-----------------------------------GGSHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhh-----------------------------------hhHHHH
Confidence 999999999999999999999999999998766543321 244556
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCcc
Q 000049 2231 LPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308 (2629)
Q Consensus 2231 lp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~ 2308 (2629)
++.++..+.++ ...+++.++.+||+++...| +.+.||++++++++.+.+....+.+.|..++..++.++..-|..+.
T Consensus 749 l~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p-~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~ 827 (888)
T d1qbkb_ 749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCP-QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 827 (888)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH-HHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH-HHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH
Confidence 66666666554 35688999999999998876 8899999999999999998866777899999999999998888777
Q ss_pred CchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 000049 2309 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2629)
Q Consensus 2309 p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~ 2342 (2629)
+.++.+...+.+ ..++.++++......|+.+..
T Consensus 828 ~~l~~~~~~i~~-~~~~~~~~~~~~~~~l~~~~~ 860 (888)
T d1qbkb_ 828 QDFIFFCDAVAS-WINPKDDLRDMFCKILHGFKN 860 (888)
T ss_dssp GGHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHH
Confidence 777777666643 344578888888887777643
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.5e-26 Score=311.67 Aligned_cols=557 Identities=17% Similarity=0.213 Sum_probs=438.8
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhCccc-hhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhh
Q 000049 1223 RALADTNADVRGRMLNAGIMIIDKHGRDN-VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301 (2629)
Q Consensus 1223 ~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~-~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i 1301 (2629)
..+.+.++.+|..+++....+....|.+. .++++|.+.+.+.. .+.++..++.-++.+..... ...++..+
T Consensus 17 ~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~-------~~ev~~~~~~~l~~~~~~~~-~~~~~~~l 88 (588)
T d1b3ua_ 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD-------EDEVLLALAEQLGTFTTLVG-GPEYVHCL 88 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC-------CHHHHHHHHHHHTTCSGGGT-SGGGGGGG
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHcC-ChhHHHHH
Confidence 66888999999999998888878888765 47899998887753 23455555444444444332 23467788
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~ 1380 (2629)
++.+...+.+++..||..+++++..+....... ....+..++..|.+++.+..|..|+..++.+....+..... .++
T Consensus 89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~--~l~ 166 (588)
T d1b3ua_ 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA--ELR 166 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH--HHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHH--HHH
Confidence 888888999999999999999998887665432 33444556777777766677888877777777665554433 577
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-Hhh
Q 000049 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLV 1459 (2629)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~i 1459 (2629)
+.+.+.++++ ++.+|..+..+++.+++..+. ......++|.+...+.|+++.||..+..++..+...++.... ..+
T Consensus 167 ~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i 243 (588)
T d1b3ua_ 167 QYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888887 899999999999999987763 122356889999999999999999999999999988877654 678
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-----hh
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PE 1534 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~ 1534 (2629)
+|.+...+.+.+|++|..+++.|+.++...+.... ...++|.+..+++|++++||..|+.+++.++..+.. ..
T Consensus 244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~ 321 (588)
T d1b3ua_ 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhh--hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 89888889999999999999999999875443322 256889999999999999999999999999987653 24
Q ss_pred HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCC-hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000049 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2629)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~-~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2629)
++.++|.+...+.|++..+|.++..... .+....+ ......++|.+...+.|.++++|..+...++.+....+ .
T Consensus 322 ~~~i~~~l~~~~~d~~~~vr~~~~~~l~-~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~----~ 396 (588)
T d1b3ua_ 322 MSQILPCIKELVSDANQHVKSALASVIM-GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG----I 396 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGG-GGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC----H
T ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHh-hhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc----h
Confidence 5789999999999999988854432221 1111112 23456788999999999999999999998888877543 2
Q ss_pred cchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh
Q 000049 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2629)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~ 1692 (2629)
....+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.+.+.++..+.+ ....+|..++.+++.++..+|.+
T Consensus 397 ~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D-~~~~VR~~A~~~L~~l~~~~~~~ 475 (588)
T d1b3ua_ 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHhCcH
Confidence 345677899999999999999999999999999999987754 4566666666654 45678999999999999999987
Q ss_pred H-HHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000049 1693 Y-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2629)
Q Consensus 1693 ~-l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~ 1771 (2629)
. ...++|.+.+...++++..|..++.+++.+...++..+ +.+.++|.+++.+.|+.++||.++.+++..+...++..
T Consensus 476 ~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~ 553 (588)
T d1b3ua_ 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 4 46788999999999999999999999999998887643 45679999999999999999999999999887766554
Q ss_pred hh-hhHHHHHhhccCCCchHHHHHHHHHHHHH
Q 000049 1772 SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2629)
Q Consensus 1772 ~i-~~llp~l~~~l~d~~~~vR~sa~~ll~~l 1802 (2629)
.. ..+.|.+.....|++-.+|..|.+++..+
T Consensus 554 ~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 43 34778888888888888999888877664
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.4e-22 Score=290.89 Aligned_cols=766 Identities=14% Similarity=0.159 Sum_probs=515.6
Q ss_pred chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCCh--hHHH-HHHHHHhccccccCChhhhh
Q 000049 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKY-SLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~--~~r~-al~~L~~~~~~~~~~~~~l~ 1575 (2629)
++...|...+.++++.+|+.|-+.|..+.+. ....+++.+...+.+.+. .+|. |.-.+
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~A~i~l--------------- 65 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTL--------------- 65 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc----CchHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------
Confidence 3455566667888999999999999988753 223456666776655432 3442 21111
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHH-HHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-CC
Q 000049 1576 LLVPIVHRGLRERSAETKKKAAQ-IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG-EE 1653 (2629)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vr~~a~~-~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g-~~ 1653 (2629)
.+.+............. ++..+ .. .....+-..+.+.+.++++.+|..++.+++.++..-. ..
T Consensus 66 ------kn~i~~~~~~~~~~~~~~~~~~i----~~-----~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~ 130 (861)
T d2bpta1 66 ------KNELVSKDSVKTQQFAQRWITQV----SP-----EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG 130 (861)
T ss_dssp ------HTTTCCSSHHHHHHHHHHHHHHS----CH-----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT
T ss_pred ------HHHhhcccchhhhhHHhhhHhcC----CH-----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC
Confidence 11121111111111111 11111 10 1223355666677788999999999999999988644 44
Q ss_pred CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh------HHHhHhHHHHHhhc--CCChhhHHHHHHHHHHhhh
Q 000049 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YFEHILPDIIRNCS--HQRASVRDGYLTLFKYLPR 1725 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~------~l~~llp~l~~~l~--~~~~~vR~~a~~~l~~L~~ 1725 (2629)
.|+++++.|++.+.++.+...|.++..+++.++...+.. .+..+++.+++.+. +.+..+|..++.++..+..
T Consensus 131 ~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~ 210 (861)
T d2bpta1 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 799999999999988777777888999999998877653 23556666766654 3568899999999999888
Q ss_pred hhccchHh--hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh---hHH-HHHhhccCCCchHHHHHHHHHH
Q 000049 1726 SLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP---LLL-PAVEDGIFNDNWRIRQSSVELL 1799 (2629)
Q Consensus 1726 ~~g~~f~p--~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~---~ll-p~l~~~l~d~~~~vR~sa~~ll 1799 (2629)
.++..+.. ....+++.+...+.++++.+|..+.+++..++..++....+ .++ +.+.....+.++.+|..+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l 290 (861)
T d2bpta1 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 87765543 34567888888999999999999999999998877654222 222 2233445566666777666655
Q ss_pred HHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhH
Q 000049 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2629)
Q Consensus 1800 ~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l 1879 (2629)
..+..... ..... ...... .........
T Consensus 291 ~~l~~~~~------------------------~~~~~-------------~~~~~~---------------~~~~~~~~~ 318 (861)
T d2bpta1 291 STICEEEI------------------------DIAYE-------------LAQFPQ---------------SPLQSYNFA 318 (861)
T ss_dssp HHHHHHHH------------------------HHHHH-------------HHHCTT---------------CSCCCCCHH
T ss_pred HHHHHHHH------------------------HHHHH-------------HHhhhh---------------hHHHHHHHH
Confidence 55431100 00000 000000 000011222
Q ss_pred hhhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1880 KEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2629)
Q Consensus 1880 ~~~l~~Ll~~L~~~L~~-------~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2629)
..+++.+++.+...+.. ..+..|..+..++..+....+..+.+.+.+.+...+.+.++..|.+++.+++.+..
T Consensus 319 ~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~ 398 (861)
T d2bpta1 319 LSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 34455555656555542 34578899999999999999999999999999999999999999999999999887
Q ss_pred hhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-----hhhhHHHHHHhccCcCchhHHHHHHHH
Q 000049 1953 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHALEDDQTSDTALDGLKQ 2027 (2629)
Q Consensus 1953 ~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~-----~~~ilp~Ll~~L~~~~~~~~aL~~L~~ 2027 (2629)
..+.....++++.+++.+...+.|+++.||..+..+++.+...++... ...+++.++..+.++..
T Consensus 399 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~---------- 468 (861)
T d2bpta1 399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPK---------- 468 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHH----------
T ss_pred hcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChH----------
Confidence 777777888999999999999999999999999999999998877533 22233333333222110
Q ss_pred HHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC----CChhhhHhhhHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 000049 2028 ILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG----PGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETV 2101 (2629)
Q Consensus 2028 il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g----~~l~~~l~~il~~Ll~~L~--~~~~~vr~~a~~al~~l 2101 (2629)
.....+.++..+..... ..+.+++..++..++.... +.+..++..+..++..+
T Consensus 469 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~ 527 (861)
T d2bpta1 469 ---------------------VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 00012223333333322 3355666677777776653 34567888888899888
Q ss_pred Hhhcccc---cHHHHHHHHH----hhcCCCC-----------hhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc
Q 000049 2102 TLVIDEE---GVESLVSELL----KGVGDNQ-----------ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 2163 (2629)
Q Consensus 2102 ~~~~~~~---~~~~ll~~Ll----~~l~d~~-----------~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~ 2163 (2629)
+...+.. +...+++.+. ..+.... ...+..++.+++.++...+.++.++.+.++..++..+.
T Consensus 528 i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~ 607 (861)
T d2bpta1 528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLE 607 (861)
T ss_dssp HHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcc
Confidence 8766542 2333333322 2221111 23455666777888888888899999999999999887
Q ss_pred CC-ChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCC
Q 000049 2164 DS-DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS 2242 (2629)
Q Consensus 2164 d~-d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~ 2242 (2629)
+. +..+++.+..+++.++...+... .+++..++|.+..++.+.+
T Consensus 608 ~~~~~~v~~~~l~~l~~l~~~~~~~~-----------------------------------~~~l~~i~p~l~~~l~~~~ 652 (861)
T d2bpta1 608 KKDSAFIEDDVFYAISALAASLGKGF-----------------------------------EKYLETFSPYLLKALNQVD 652 (861)
T ss_dssp STTGGGTHHHHHHHHHHHHHHHGGGG-----------------------------------HHHHHHHHHHHHHHHHCTT
T ss_pred cCCchhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHhhHHHHHhCCCC
Confidence 54 46688888888888876543221 2456678899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000049 2243 AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2629)
Q Consensus 2243 ~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~ 2321 (2629)
+.+|..|+.+++.+++..+ ..+.||++.+++.|++.+++. .+.++|..++.+++.++..+|..+.||+|++++.+.+.
T Consensus 653 ~~v~~~a~~~l~~i~~~~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~ 731 (861)
T d2bpta1 653 SPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH-HHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887 789999999999999999864 45689999999999999999999999999999999998
Q ss_pred cCCCC-----------HHHHHHHHHHHHHHHh-c-------cCChhHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHh
Q 000049 2322 LQDST-----------RTVRSSAALALGKLSA-L-------STRVDPLVGDLLSSLQV----SDAGIREAILTALKGVLK 2378 (2629)
Q Consensus 2322 L~d~~-----------~~vR~~Aa~aLg~l~~-~-------~~~~~~ll~~Ll~~l~~----~d~~vr~~~l~AL~~vi~ 2378 (2629)
+.... .++|..+..++..++. + .|.++.+++.+...+.+ .+.+++.+++..++.++.
T Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 811 (861)
T d2bpta1 732 QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHH
Confidence 87641 3478888888877743 1 23344444433333433 357788888888998888
Q ss_pred hcCCCcChHHH--HHHHHHHHHhhcCC--CHHHHHHHHHHHHH
Q 000049 2379 HAGKSVSSAVK--IRVYSVLKDLVYHD--DDHVRVSAASILGI 2417 (2629)
Q Consensus 2379 ~~g~~~~~~~~--~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~ 2417 (2629)
..|.....++. +.+..++.....+. +...|..|..+...
T Consensus 812 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 854 (861)
T d2bpta1 812 MFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQ 854 (861)
T ss_dssp HCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 88764323222 33444455554444 56677766555433
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.9e-23 Score=295.67 Aligned_cols=760 Identities=16% Similarity=0.189 Sum_probs=490.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH------------------
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE------------------ 1118 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~------------------ 1118 (2629)
||+.++|++++|||+.+|++|+++|+..... +.|.+...+..+. ...+.+...|.+|.
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~f~~~L~~i~-~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~ 76 (876)
T d1qgra_ 1 MELITILEKTVSPDRLELEAAQKFLERAAVE---NLPTFLVELSRVL-ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CCHHHHHHHHhCcCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence 5789999999999999999999999875421 1122223333332 22334556666653
Q ss_pred -HHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000049 1119 -DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2629)
Q Consensus 1119 -~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 1194 (2629)
..|...+.+.++.+ ..+++.+.+++. +|+.+|.+++.++. .+| +.|++++..+.+.... .+.+...|
T Consensus 77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~--------~~~~~~~~ 147 (876)
T d1qgra_ 77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN--------PNSTEHMK 147 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC--------TTCCHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcC--------CCCcHHHH
Confidence 23554444444445 778888888764 67778999998864 344 3455555555554321 12334689
Q ss_pred hHHHHHHHHhhhhcCCCC----hhHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHhhCc----cc-hhhhHHHHHHHhc
Q 000049 1195 QGIALALHSAADVLRTKD----LPVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHGR----DN-VSLLFPIFENYLN 1264 (2629)
Q Consensus 1195 ~~~~~~l~~l~~~~~~~~----~~~i~~~li~~~l-~d~~~~Vr~~~~~a~~~~i~~~g~----~~-~~~Ll~~~~~~l~ 1264 (2629)
.++..+|.++++.+.++. .+.+++.+++... .+++..+|..++.+....+..... .. ...+++.+...+.
T Consensus 148 ~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 227 (876)
T d1qgra_ 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999987665432 3456666644333 456789999998887766544322 11 2345566655554
Q ss_pred ccCCChhhhhhHHHHHHHHHHHHHhhhcc-CCCcch-hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhc----------
Q 000049 1265 KKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ---------- 1332 (2629)
Q Consensus 1265 ~~~~~~~~~~~vr~~~v~~~~~La~~l~~-~~~~l~-~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~---------- 1332 (2629)
.+ +..++..++..+..+...+.. ..+++. .+...+...+.+..++++..+...+..+.....
T Consensus 228 ~~------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 301 (876)
T d1qgra_ 228 CP------DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (876)
T ss_dssp CS------SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 32 245788888888888875533 234443 455667778888888888776665444332100
Q ss_pred -----c----------chHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCC
Q 000049 1333 -----D----------EAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391 (2629)
Q Consensus 1333 -----~----------~~~~ll~~ll~~L~~------~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~ 1391 (2629)
. ....+++.+.+.+.. .++|..|..|..++..+....+...+. .+++++.+.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~i~~~l~~~- 378 (876)
T d1qgra_ 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP--HVLPFIKEHIKNP- 378 (876)
T ss_dssp HHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHTTCS-
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHhhccc-
Confidence 0 012334444444432 235678999999999999988877664 6788999998876
Q ss_pred CHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----hHHhhHHHHHh
Q 000049 1392 SAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLLK 1465 (2629)
Q Consensus 1392 ~~~~R~~Al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll~ 1465 (2629)
+|..|+++..+++.+.++.. ..+.+++.++++.+...+.|+++.||.++..+++.+++.++.. .+..+++.++.
T Consensus 379 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (876)
T d1qgra_ 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHH
Confidence 89999999999999887665 4567889999999999999999999999999999998876543 34667777777
Q ss_pred hhccCChhhhHHHHHHHHHHHhhC--------------chhhhhhccchHHHHhhhhcCC---CHHHHHHHHHHHHHHhh
Q 000049 1466 GLEDKAWRTKQSSVQLLGAMAYCA--------------PQQLSQCLPKIVPKLTEVLTDT---HPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1466 ~L~~~~w~~r~~a~~~L~~la~~~--------------p~~l~~~L~~ivp~L~~~L~D~---~~~VR~aA~~aL~~l~~ 1528 (2629)
.+.+ +++++..++..+..+.... ...+.++++.+++.+...+.+. +..++..+..++..+..
T Consensus 459 ~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 537 (876)
T d1qgra_ 459 GLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 (876)
T ss_dssp HTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred HhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhh
Confidence 6754 6778888888887776531 1224556777888888877653 56788889988888876
Q ss_pred hcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1529 VIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1529 ~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
...+ +.+..+++.++..+. .... .......... +. ...+.+...+..+..+..
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~-----------~~l~--~~~~~~~~~~----~~-------~~~~~~~~l~~~l~~~~~ 593 (876)
T d1qgra_ 538 NSAKDCYPAVQKTTLVIMERLQ-----------QVLQ--MESHIQSTSD----RI-------QFNDLQSLLCATLQNVLR 593 (876)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHH-----------HHHT--TTTSCCSTTH----HH-------HHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHHH-----------HHHH--Hhhhhcchhh----hH-------HHHHHHHHHHHHHHHHHH
Confidence 5543 233333333333221 0000 0000000000 00 001233344455555554
Q ss_pred hcCCCCcccchHhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCChHHHHHHHH
Q 000049 1606 LVTEPKDMIPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2629)
Q Consensus 1606 ~~~~~~~l~~~l~~ll~~L~~~L~--d~~~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~R~~a~~ 1680 (2629)
..+. ....++.+.+++.+...+. +++..++..+..+++.++...|+. +++.++|.++..+.+.....+|..++.
T Consensus 594 ~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~ 672 (876)
T d1qgra_ 594 KVQH-QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVG 672 (876)
T ss_dssp TSCH-HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred Hcch-hhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4322 3455677889999888876 356789999999999999998875 568899999999988776778888888
Q ss_pred HHHHHHHhhChh---HHHhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHH
Q 000049 1681 GLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755 (2629)
Q Consensus 1681 ~L~~i~~~~g~~---~l~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~ 1755 (2629)
.++.+....+.. +.+.+++.+++.+++. ++.+|..++.+++.++..+|..|.||++.++|.+.+.+....+....
T Consensus 673 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~ 752 (876)
T d1qgra_ 673 LVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDY 752 (876)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCH
T ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccch
Confidence 888888877654 4577888888888764 57899999999999999999999999999999988776532211111
Q ss_pred HHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHH
Q 000049 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2629)
Q Consensus 1756 ~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~ 1835 (2629)
...+.... +|.+++++.+.++....+..
T Consensus 753 ~~~~~~~~---------------------------l~~~~~~~~~~i~~~~~~~~------------------------- 780 (876)
T d1qgra_ 753 DMVDYLNE---------------------------LRESCLEAYTGIVQGLKGDQ------------------------- 780 (876)
T ss_dssp HHHHHHHH---------------------------HHHHHHHHHHHHHHHHHCSS-------------------------
T ss_pred hHHHHHHH---------------------------HHHHHHHHHHHHHHHhcccc-------------------------
Confidence 11111000 12222233333221111000
Q ss_pred HhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHH
Q 000049 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL--ASSSSERRQVAGRALGELV 1913 (2629)
Q Consensus 1836 ~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L--~~~~~~~R~~A~~~L~~lv 1913 (2629)
.. .......+.++++.++..+.... .+.+..++..+..++++++
T Consensus 781 ------------------~~----------------~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~ 826 (876)
T d1qgra_ 781 ------------------EN----------------VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp ------------------SS----------------CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred ------------------cc----------------chhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 00 00011223345555555443322 2456788888999999999
Q ss_pred HHhccchh------hhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000049 1914 RKLGERVL------PSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1914 ~~~~~~~l------~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
..+|.... |.+.+.+....++++++.|..+.++..++
T Consensus 827 ~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~ 869 (876)
T d1qgra_ 827 TAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99988743 56677787788889999998887765543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.8e-21 Score=277.13 Aligned_cols=746 Identities=13% Similarity=0.152 Sum_probs=489.5
Q ss_pred hHhHH-HhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000049 1132 YSGLF-KALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2629)
Q Consensus 1132 ~~~Ll-~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~--- 1207 (2629)
+.++| ..+.++|+.+|+.|.+.+-.+.+..+. ..+..+.+... +. ..+-..|..++..|+.....
T Consensus 6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~---~~~~~l~~il~----~~----~~~~~~r~~A~i~lkn~i~~~~~ 74 (861)
T d2bpta1 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFL---QFAGLSSQVLI----DE----NTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHT----CT----TSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHH----cC----CCCHHHHHHHHHHHHHHhhcccc
Confidence 43444 567899999999999999877665432 23333333321 11 12346888888888765421
Q ss_pred -------------cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhh-CccchhhhHHHHHHHhcccCCChhhh
Q 000049 1208 -------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKH-GRDNVSLLFPIFENYLNKKASDEEKY 1273 (2629)
Q Consensus 1208 -------------~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~-g~~~~~~Ll~~~~~~l~~~~~~~~~~ 1273 (2629)
++++....+...+ ..++.++++.||..+..++..+.... +...|++++|.+.+.+... ..
T Consensus 75 ~~~~~~~~~~~~~i~~~~~~~ik~~l-l~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~-----~~ 148 (861)
T d2bpta1 75 VKTQQFAQRWITQVSPEAKNQIKTNA-LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-----QP 148 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-----SC
T ss_pred hhhhhHHhhhHhcCCHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCC-----Cc
Confidence 2222222344444 35678899999999988887777653 4457999999777666542 12
Q ss_pred hhHHHHHHHHHHHHHhhhccC-CC---cchhhHHHHHhhc--CCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHH
Q 000049 1274 DLVREGVVIFTGALAKHLAKD-DP---KVHAVVDKLLDVL--NTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRL 1342 (2629)
Q Consensus 1274 ~~vr~~~v~~~~~La~~l~~~-~~---~l~~i~~~L~~~L--~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~l 1342 (2629)
..+|.+++.+++.++..++.. ++ .+..++..++..+ .+++..|+..+..++..++....... ...+..+
T Consensus 149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (861)
T d2bpta1 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence 457888888899888766543 22 2344555555555 35678999999999988876654321 1222223
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhh-hcHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHhcc--------
Q 000049 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK-YGIAAT-LREGLADRNSAKRREGALLAFECLCEKLGR-------- 1412 (2629)
Q Consensus 1343 l~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~-~~i~~~-L~~~l~~~~~~~~R~~Al~al~~La~~~~~-------- 1412 (2629)
+....+.+++..|..+..++..++...+...... ..++.. +.....+. ++..|..++..+..+++....
T Consensus 229 l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T d2bpta1 229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333455678999999999999998765432210 022222 33334444 788999998888877754211
Q ss_pred ---------CchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhH
Q 000049 1413 ---------LFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2629)
Q Consensus 1413 ---------~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~ 1476 (2629)
...+.+..++|.++..+.+ .+..+|..+..++..++..++...+..+++.+...+.+.+|+.|.
T Consensus 308 ~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (861)
T d2bpta1 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHH
Confidence 1234566778888877643 245788999999999988888777777888878888899999999
Q ss_pred HHHHHHHHHHhhC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH
Q 000049 1477 SSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555 (2629)
Q Consensus 1477 ~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~ 1555 (2629)
+++..++.++... +.....+++.+++.+.+.+.|+++.||.+++++++.+++.++.... +
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------------~------ 448 (861)
T d2bpta1 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID-------------P------ 448 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-------------T------
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhh-------------h------
Confidence 9999999998754 4556778899999999999999999999999999999876542100 0
Q ss_pred HHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC--CCcccchHhhhHHHHHHHhc--CC
Q 000049 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLV--DP 1631 (2629)
Q Consensus 1556 al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~--d~ 1631 (2629)
...+..+++.+...+.+ ++.++..++.++..++....+ .....++...++..+..... +.
T Consensus 449 ---------------~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (861)
T d2bpta1 449 ---------------QQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN 512 (861)
T ss_dssp ---------------TTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC
T ss_pred ---------------HHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhh
Confidence 00111222222222222 345566666666666554332 12345666667777666654 45
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhcc----CC---Ch-------HHHHHHHHHHHHHHHhhChh--
Q 000049 1632 IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKS----DN---SN-------VERSGAAQGLSEVLAALGTV-- 1692 (2629)
Q Consensus 1632 ~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll~~L~~----~~---~~-------~~R~~a~~~L~~i~~~~g~~-- 1692 (2629)
...+|..+..+++.++...++.. ...+.+.+...+.. .. .. ..+......++.+....+..
T Consensus 513 ~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 592 (861)
T d2bpta1 513 EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 67899999999999999887652 33444443333321 11 11 11223334455555544433
Q ss_pred -HHHhHhHHHHHhhcC-CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh
Q 000049 1693 -YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2629)
Q Consensus 1693 -~l~~llp~l~~~l~~-~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~ 1770 (2629)
+.+.+++.+++.+.+ .++.+|+.++.+++.++..+|..|.||++.++|.++.++.+.++.+|..+...+..++...+.
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~ 672 (861)
T d2bpta1 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 345667777766654 467799999999999999999999999999999999999999889998888777776654433
Q ss_pred chhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHH
Q 000049 1771 TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2629)
Q Consensus 1771 ~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~ 1850 (2629)
.. .|. .++++..+.
T Consensus 673 ~~----~~~--------------------------------------------------------------~~~i~~~L~ 686 (861)
T d2bpta1 673 DF----RRY--------------------------------------------------------------SDAMMNVLA 686 (861)
T ss_dssp GG----HHH--------------------------------------------------------------HHHHHHHHH
T ss_pred Hh----Hhh--------------------------------------------------------------HHHHHHHHH
Confidence 21 110 011122222
Q ss_pred hhc--cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHHhc
Q 000049 1851 MVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRKLG 1917 (2629)
Q Consensus 1851 ~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-----------~~~R~~A~~~L~~lv~~~~ 1917 (2629)
..+ .+.+..+|..++.+++.++.+.+..+.+|++.+++.+.+.+.... ..+|..+..++..++....
T Consensus 687 ~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 766 (861)
T d2bpta1 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 223456889999999999998888899999999999988876432 2357788888888877554
Q ss_pred cc------hhhhHHHHHhhhcCC----CChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHHhcC--CcHHHHH
Q 000049 1918 ER------VLPSIIPILSRGLKD----PSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD--SILEVRE 1983 (2629)
Q Consensus 1918 ~~------~l~~llp~L~~~L~d----~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~d--~d~~VR~ 1983 (2629)
.. +.+.+++.+...+.+ .+.+++..++..+|.+...++.....+++ +.+...+.....+ .+...|+
T Consensus 767 ~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 846 (861)
T d2bpta1 767 DKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKD 846 (861)
T ss_dssp TCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHHH
Confidence 32 345555555555554 35677788888899988887765444443 3344445555443 4677888
Q ss_pred HHHHHHHHHHHHh
Q 000049 1984 SAGLAFSTLFKSA 1996 (2629)
Q Consensus 1984 ~A~~al~~l~~~~ 1996 (2629)
.|.+|...+-+.+
T Consensus 847 ~~~~~~~~~~~~~ 859 (861)
T d2bpta1 847 TARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888877765544
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.6e-20 Score=269.85 Aligned_cols=747 Identities=16% Similarity=0.203 Sum_probs=505.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhh------
Q 000049 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRG------ 1649 (2629)
Q Consensus 1578 ~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~~------ 1649 (2629)
++.|... -+.+..+|+.|.+.+..+... + .+..+..+...+.+. +..+|..|+-.|......
T Consensus 4 ~~~L~~~-~s~d~~~r~~Ae~~L~~~~~~--~-------~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~ 73 (876)
T d1qgra_ 4 ITILEKT-VSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp HHHHHGG-GCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHH-hCcCHHHHHHHHHHHHHHHhc--C-------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchh
Confidence 3444443 456789999999999887653 1 234555666666543 467999999998876642
Q ss_pred ---------hCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh-hChhHHHhHhHHHHHhhcCC--ChhhHHHHH
Q 000049 1650 ---------MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQ--RASVRDGYL 1717 (2629)
Q Consensus 1650 ---------~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~-~g~~~l~~llp~l~~~l~~~--~~~vR~~a~ 1717 (2629)
++++....+...++..+.++.. .|..++..++.++.. ++.+.|++++|.+.+.+.++ ...+|++++
T Consensus 74 ~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~--~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l 151 (876)
T d1qgra_ 74 AQYQQRWLAIDANARREVKNYVLHTLGTETY--RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS--SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhhhcccccCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 2222234455667777776543 466778888888775 34456889999999987654 467899999
Q ss_pred HHHHHhhhhhc-cchHhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhccCCCch
Q 000049 1718 TLFKYLPRSLG-VQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNW 1789 (2629)
Q Consensus 1718 ~~l~~L~~~~g-~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~l~d~~~ 1789 (2629)
.++..++..++ ..+.++.+.+++.+.+.+.++ ...+|..++.++.......... ..+.+++.+.....++++
T Consensus 152 ~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 231 (876)
T d1qgra_ 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCH
Confidence 99999988765 457788999999999998654 4678988888877665433221 223466677777888999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHH
Q 000049 1790 RIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869 (2629)
Q Consensus 1790 ~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~ 1869 (2629)
++|..+++.+..+....+.. +...+.. .+...+.....+....++..++..|.
T Consensus 232 ~v~~~~~~~l~~l~~~~~~~-----------------------~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 232 RVRVAALQNLVKIMSLYYQY-----------------------METYMGP----ALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGG-----------------------CHHHHTT----THHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH-----------------------HHHHHHH----HHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999998887543210 0111110 11222223345566778888888887
Q ss_pred HHHhcCh---------------------hhHhhhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhccchh
Q 000049 1870 TIVANTP---------------------KTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVL 1921 (2629)
Q Consensus 1870 ~l~~~~~---------------------~~l~~~l~~Ll~~L~~~L~~-------~~~~~R~~A~~~L~~lv~~~~~~~l 1921 (2629)
.++.... .....+.+.+++.+...+.. ..+..|..|..++..+....+....
T Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 364 (876)
T d1qgra_ 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh
Confidence 7764211 11234455666666665542 2345899999999999999998899
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-
Q 000049 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA- 2000 (2629)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~- 2000 (2629)
+.+++.+...+.++++..|.+++..++.+........+.++...+++.+...+.|+++.||..|..+++.+++..+...
T Consensus 365 ~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T d1qgra_ 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhh
Confidence 9999999999999999999999999998877777777889999999999999999999999999999999998776432
Q ss_pred ----hhhhHHHHHHhccCcCc-hhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhh
Q 000049 2001 ----IDEIVPTLLHALEDDQT-SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTI 2075 (2629)
Q Consensus 2001 ----~~~ilp~Ll~~L~~~~~-~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~i 2075 (2629)
...+++.+++.+.+... ...+...+..++..... ..+.+. .. .......+.+|++.+
T Consensus 445 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~-~~~~~~-~~----------------~~~~~~~l~~~~~~i 506 (876)
T d1qgra_ 445 NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYE-AADVAD-DQ----------------EEPATYCLSSSFELI 506 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-TTSCTT-SC----------------CCCCCCSSTTTHHHH
T ss_pred hHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHH-HH----------------HhhhHHHHHHHHHHH
Confidence 45566666666654321 22233333332211000 000000 00 001134467788888
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHHHhhccc---ccHHH----HHHHHHhhcCCC----Ch-------hHHHHHHH
Q 000049 2076 LPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE---EGVES----LVSELLKGVGDN----QA-------SIRRSSAY 2134 (2629)
Q Consensus 2076 l~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~~---~~~~~----ll~~Ll~~l~d~----~~-------~vR~~a~~ 2134 (2629)
++.++..+... ...++..+..++..++..... +.+.. +++.+...+... +. ..+...+.
T Consensus 507 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 586 (876)
T d1qgra_ 507 VQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCA 586 (876)
T ss_dssp HHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHH
Confidence 88888887543 356777777777777665433 22333 333333222211 11 12233444
Q ss_pred HHHHHHHhch-hhhhhhHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhh
Q 000049 2135 LIGYFYKNSK-LYLVDEAPNMISTLIVLLS--DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK 2211 (2629)
Q Consensus 2135 ~L~~l~~~~~-~~~~~~~~~il~~Ll~ll~--d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~ 2211 (2629)
.+..+....+ ....++.+.++..+...+. +++..++..+..+++.++...+..
T Consensus 587 ~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~------------------------ 642 (876)
T d1qgra_ 587 TLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE------------------------ 642 (876)
T ss_dssp HHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG------------------------
T ss_pred HHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchh------------------------
Confidence 4555554433 3455667788888888776 345678888888888776543221
Q ss_pred cCCcccccCCCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC-CCHhHH
Q 000049 2212 KGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVK 2289 (2629)
Q Consensus 2212 ~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~-~~~~vk 2289 (2629)
..+++..++|.+..++.+. .+++|..|..+++.++...+ ..+.||++.+++.++..+++. .+.++|
T Consensus 643 -----------~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~k 710 (876)
T d1qgra_ 643 -----------FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGNENVHRSVK 710 (876)
T ss_dssp -----------GGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCTTSCGGGH
T ss_pred -----------hHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhH-HhhhhhHHHHHHHHHHHhCCccCCHHHH
Confidence 1245667888888888776 47799999999999998877 789999999999999999764 457899
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC----CH-------HHHHHHHHHHHHHHh-cc----------CCh
Q 000049 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS----TR-------TVRSSAALALGKLSA-LS----------TRV 2347 (2629)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~----~~-------~vR~~Aa~aLg~l~~-~~----------~~~ 2347 (2629)
..++.+++.++..+|..+.+|++.+.+.+.+.++.. +. .+|.....+++.+.. +. ..+
T Consensus 711 ~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 790 (876)
T d1qgra_ 711 PQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLV 790 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGS
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 999999999999999999999999999998876632 22 357778888777632 10 112
Q ss_pred hHHHHHHHHhh----h--cCCHHHHHHHHHHHHHHHhhcCCCcChHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000049 2348 DPLVGDLLSSL----Q--VSDAGIREAILTALKGVLKHAGKSVSSAV--KIRVYSVLKDLVYHDDDHVRVSAASILGI 2417 (2629)
Q Consensus 2348 ~~ll~~Ll~~l----~--~~d~~vr~~~l~AL~~vi~~~g~~~~~~~--~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~ 2417 (2629)
.++++.++..+ . ..+.+++..++..++.++...|..+...+ .+.+..++.....+.++..|..|..+.-.
T Consensus 791 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~ 868 (876)
T d1qgra_ 791 QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKE 868 (876)
T ss_dssp GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33344433322 2 23588898999999999999988663322 26667788888888899999887655433
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.8e-13 Score=177.24 Aligned_cols=383 Identities=13% Similarity=0.163 Sum_probs=262.8
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhcC-
Q 000049 1132 YSGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR- 1209 (2629)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~~~- 1209 (2629)
+..+++.+.++|+.+|+.|.+.+..+.++. |+.+ ..+.+.... . ..+-..|..++..|+.......
T Consensus 2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~----~~l~~il~~---~-----~~~~~~R~~A~i~lk~~l~~~~~ 69 (458)
T d1ibrb_ 2 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFL----VELSRVLAN---P-----GNSQVARVAAGLQIKNSLTSKDP 69 (458)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHC---T-----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHH----HHHHHHHhc---C-----CCCHHHHHHHHHHHHHHhhccCc
Confidence 346778888999999999999998887654 3333 333332211 1 1233688888888876653211
Q ss_pred --------------CCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHH-HHhhCccchhhhHHHHHHHhcccCCChhhhh
Q 000049 1210 --------------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMI-IDKHGRDNVSLLFPIFENYLNKKASDEEKYD 1274 (2629)
Q Consensus 1210 --------------~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~-i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~ 1274 (2629)
.+....+...++ .++.+.++.+|.. ..+...+ ....+...|+++++.+...+..... ..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~i~~~ll-~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~----~~ 143 (458)
T d1ibrb_ 70 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRPSSA-SQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TE 143 (458)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSSCSH-HHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CH
T ss_pred hhhhHHhhhhccCCHHHHHHHHHHHH-hccCCCcHHHHHH-HHHHHHHHHHhCCcccCcchhHHHHHHHHhhcc----hH
Confidence 111123333332 4555666555544 3443333 3345667888999877777754322 34
Q ss_pred hHHHHHHHHHHHHHhhhccC--CCcchhhHHHHHhhcCC--CcHHHHHHHHHhhhhhHhhhccc-----hHHHHHHHHHH
Q 000049 1275 LVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQ 1345 (2629)
Q Consensus 1275 ~vr~~~v~~~~~La~~l~~~--~~~l~~i~~~L~~~L~~--~~~~Vq~~~~~~L~~l~~~~~~~-----~~~ll~~ll~~ 1345 (2629)
..++.++..++.+....... .+....+++.+...+.+ ++.+|+..+.+++..++...... ....+...+..
T Consensus 144 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (458)
T d1ibrb_ 144 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 223 (458)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHH
Confidence 46677777777777655332 34566788888888865 56789999999988777544321 12233344445
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-----------
Q 000049 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR----------- 1412 (2629)
Q Consensus 1346 L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~----------- 1412 (2629)
+.+.+++..|..+..+|..++...+..... ...+...+.....+. +...|..++..+..+++....
T Consensus 224 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 302 (458)
T d1ibrb_ 224 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 302 (458)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 556667899999999999999876532211 112344455555555 678888888888888764311
Q ss_pred ----------CchhHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhh
Q 000049 1413 ----------LFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 1475 (2629)
Q Consensus 1413 ----------~~~~~v~~ilp~ll~~l~-------D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r 1475 (2629)
........+.|.+...+. |.+..+|.++..++..++..+++..+..++|.+.+.+.+++|+.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r 382 (458)
T d1ibrb_ 303 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 382 (458)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHH
Confidence 112334566676666553 334569999999999999988888888899999999999999999
Q ss_pred HHHHHHHHHHHhh-CchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch
Q 000049 1476 QSSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2629)
Q Consensus 1476 ~~a~~~L~~la~~-~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2629)
.+++.+|+.+++. .++.+.++++.++|.+...++|+++.||.+|+++|+++++.++++
T Consensus 383 ~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 383 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999975 456778899999999999999999999999999999999887643
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.7e-13 Score=173.58 Aligned_cols=392 Identities=17% Similarity=0.244 Sum_probs=279.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhC---------
Q 000049 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMG--------- 1651 (2629)
Q Consensus 1583 ~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~~~g--------- 1651 (2629)
..+.+.+.++|..|.+.+..+... + .+..+..+...+.+. ...+|..|+..+........
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~--~-------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhc--C-------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 344466789999999999888763 1 234555566666543 56899999888877665322
Q ss_pred ------CCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhC-hhHHHhHhHHHHHhhcC--CChhhHHHHHHHHHH
Q 000049 1652 ------EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSH--QRASVRDGYLTLFKY 1722 (2629)
Q Consensus 1652 ------~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g-~~~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~ 1722 (2629)
++....+.+.+++.+.++.. .+..++..++.++.... ...++++++.+.+.+.+ ..+.++.+++.++..
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 155 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETY--RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 155 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCS--SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 11233455566676665543 35566777777766543 44567888888888765 467789999999999
Q ss_pred hhhhhc-cchHhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhccCCCchHHHHH
Q 000049 1723 LPRSLG-VQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQS 1794 (2629)
Q Consensus 1723 L~~~~g-~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~l~d~~~~vR~s 1794 (2629)
+....+ ..+.++...+++.+.+.+.+. ...+|..++.++..++...... ....+.+.+.....+.++.+|..
T Consensus 156 ~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (458)
T d1ibrb_ 156 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235 (458)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHH
Confidence 987765 456678899999999998754 4679999998888776533221 22346677777788999999999
Q ss_pred HHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhc
Q 000049 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2629)
Q Consensus 1795 a~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~ 1874 (2629)
+++.++.++...+.... ..+. +.+...+.....+....++..|++.|..++..
T Consensus 236 ~~~~l~~i~~~~~~~~~-----------------------~~l~----~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~ 288 (458)
T d1ibrb_ 236 ALQNLVKIMSLYYQYME-----------------------TYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDE 288 (458)
T ss_dssp HHHHHHHHHHHCGGGCT-----------------------TTTT----TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH-----------------------HHHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 99999988755321110 0000 00111112234566678888899888887642
Q ss_pred Ch---------------------hhHhhhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHH
Q 000049 1875 TP---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2629)
Q Consensus 1875 ~~---------------------~~l~~~l~~Ll~~L~~~L~-------~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp 1926 (2629)
.. ......++.+.+.+...+. +.++..|..+..+++.+....|..+++.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ 368 (458)
T d1ibrb_ 289 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 368 (458)
T ss_dssp HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHH
Confidence 11 1123455666666666654 2344689999999999999999889999999
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-hhhhH
Q 000049 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-IDEIV 2005 (2629)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~-~~~il 2005 (2629)
.+.+.++++++.+|.+++.+|+.++..+.+..+.++++.++|.+...+.|+++.||.+|+.+++.+.+.++... .+.++
T Consensus 369 ~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l 448 (458)
T d1ibrb_ 369 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 448 (458)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHH
Confidence 99999999999999999999999877666677788999999999999999999999999999999998877543 34556
Q ss_pred HHHHHhc
Q 000049 2006 PTLLHAL 2012 (2629)
Q Consensus 2006 p~Ll~~L 2012 (2629)
|.++..|
T Consensus 449 ~~ll~~l 455 (458)
T d1ibrb_ 449 APLLQCL 455 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=3.3e-10 Score=162.93 Aligned_cols=633 Identities=12% Similarity=0.115 Sum_probs=354.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcC--C
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~--~ 1126 (2629)
+.+.++|++.++|+ .|++|+++|++... .|.....+..+.. ..+.+..+|.+|. +.|.... .
T Consensus 5 ~~l~~ll~~s~~~~--~~k~Ae~~L~~~~~-----~p~f~~~L~~i~~-~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~ 76 (959)
T d1wa5c_ 5 ETVAKFLAESVIAS--TAKTSERNLRQLET-----QDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (959)
T ss_dssp HHHHHHHHHTTSGG--GHHHHHHHHHHHHT-----STTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHCCChH--HHHHHHHHHHHHHc-----CCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcccccccC
Confidence 46778888877665 79999999987531 1333333333322 2334556777653 5686432 1
Q ss_pred CCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000049 1127 DFGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2629)
Q Consensus 1127 ~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 1200 (2629)
.++++ + ..+++.|.+++..+|+..+.+++.++. .||+.|++++..+.+.. +. ++...+.++..+
T Consensus 77 ~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l----~s------~~~~~~~~~L~~ 146 (959)
T d1wa5c_ 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SN------DDMVTNKGVLTV 146 (959)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CS------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHh----CC------CCHHHHHHHHHH
Confidence 23322 4 678888989999999999999999876 68899998888887652 11 234678888999
Q ss_pred HHHhhhhcCCCC----h--------hHHHHHH---Hh---hhc-CCC-cH---HHHHHHHHHHHHHHHhh-C-------c
Q 000049 1201 LHSAADVLRTKD----L--------PVIMTFL---IS---RAL-ADT-NA---DVRGRMLNAGIMIIDKH-G-------R 1249 (2629)
Q Consensus 1201 l~~l~~~~~~~~----~--------~~i~~~l---i~---~~l-~d~-~~---~Vr~~~~~a~~~~i~~~-g-------~ 1249 (2629)
+..+++.+.... . +.+...+ +. ... ... +. ......+.....++... . .
T Consensus 147 l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (959)
T d1wa5c_ 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (959)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 999987654321 0 1111111 11 111 111 11 11111122222222211 1 1
Q ss_pred cchhhhHHHHHHHhcccCCCh---------hhhhhHHHHHHHHHHHHHhhhcc-CCCcchhhHHHHHhhcC----C-CcH
Q 000049 1250 DNVSLLFPIFENYLNKKASDE---------EKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLN----T-PSE 1314 (2629)
Q Consensus 1250 ~~~~~Ll~~~~~~l~~~~~~~---------~~~~~vr~~~v~~~~~La~~l~~-~~~~l~~i~~~L~~~L~----~-~~~ 1314 (2629)
+++..+++.|...+....... .....++......+..+...+.. ..+.++.+++.+.+.+. . ..+
T Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (959)
T d1wa5c_ 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (959)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 234556666777665421110 01123444444444444433221 12333344443333221 1 223
Q ss_pred HHHHHHHHhhhhhHhhhc--------cchHHHHHHHH-----------------------HHhhcCCCHHHHHHHHHHHH
Q 000049 1315 AVQRAVSSCLSPLMQSMQ--------DEAPTLVSRLL-----------------------DQLMKSDKYGERRGAAFGLA 1363 (2629)
Q Consensus 1315 ~Vq~~~~~~L~~l~~~~~--------~~~~~ll~~ll-----------------------~~L~~~~~~~~R~~Aa~~L~ 1363 (2629)
.+...+.+.+..++.... +....++..++ +.....+.+..|..|...+.
T Consensus 307 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~ 386 (959)
T d1wa5c_ 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (959)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHH
Confidence 333333333332221110 00111221111 11111223466888888888
Q ss_pred HHHhhhCcchhhhhcHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHhc------------cCchhHHHHHHHHHH
Q 000049 1364 GVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLG------------RLFEPYVIQMLPLLL 1426 (2629)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~l~-----~~~~~~~R~~Al~al~~La~~~~------------~~~~~~v~~ilp~ll 1426 (2629)
.+....+..... .+.+.+.+.+. ...+|..|++++.+++.+....+ ..+.+++...+...+
T Consensus 387 ~l~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l 464 (959)
T d1wa5c_ 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (959)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHhccccchH--HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 888776654432 34444444332 23479999999999999875321 013344444444445
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhC-----------chhhhh
Q 000049 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-----------PQQLSQ 1495 (2629)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~-----------p~~l~~ 1495 (2629)
....++.+.+|..+...+........+.....+++.++..|.+++..++..|+.++..+.... .+.+.+
T Consensus 465 ~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p 544 (959)
T d1wa5c_ 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (959)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred ccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHh
Confidence 555677889999998888888888877778899999999999999999999999999887632 234667
Q ss_pred hccchHHHHhhhhcCCCHHH-----HHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccc
Q 000049 1496 CLPKIVPKLTEVLTDTHPKV-----QSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~V-----R~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2629)
+++.++..++..+.+..... ......++..+.+.+++ |+...+++.+...+
T Consensus 545 ~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~--------------------- 603 (959)
T d1wa5c_ 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV--------------------- 603 (959)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 78888888888776544332 23466777777665543 33344444433321
Q ss_pred cCChhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000049 1568 TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l 1646 (2629)
.+..++ .+........++++.+.... .+.....+...++|.+...+..........+...++.+
T Consensus 604 --------------~~~~~~~~~~~~~~~~~e~l~~l~~~~-~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~ 668 (959)
T d1wa5c_ 604 --------------TIMAKNPSNPRFTHYTFESIGAILNYT-QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (959)
T ss_dssp --------------HHHTTSCCCHHHHHHHHHHHHHHHHTS-CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred --------------HHHhcCccchHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 111111 23455566677777776643 33455667788899998888877777788888888888
Q ss_pred HhhhCC--CCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH---HhHhHHHHHhhcCCChhhHHHHHHHHH
Q 000049 1647 IRGMGE--ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF---EHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2629)
Q Consensus 1647 ~~~~g~--~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l---~~llp~l~~~l~~~~~~vR~~a~~~l~ 1721 (2629)
....+. +.+..+++.++......... ........+..++.. |.+.+ ..++..+...+... ..+..++..+.
T Consensus 669 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~ll~ 744 (959)
T d1wa5c_ 669 VEQSATIPESIKPLAQPLLAPNVWELKG-NIPAVTRLLKSFIKT-DSSIFPDLVPVLGIFQRLIASK--AYEVHGFDLLE 744 (959)
T ss_dssp HHHCSSCCTTTGGGHHHHTSGGGGCCTT-THHHHHHHHHHHHHH-HGGGCSCSHHHHHHHHHHHTCT--TTHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHhhHHHHHHhh-hHHHHHHHHHHHHHh-CHHhhcchHHHHHHHHHHHCCC--cchHHHHHHHH
Confidence 776542 23455566554433322222 111222223333222 22211 23333333333332 23466788888
Q ss_pred Hhhhhhcc-chHhhHHhHHHHHHhhcCCC
Q 000049 1722 YLPRSLGV-QFQNYLQQVLPAILDGLADE 1749 (2629)
Q Consensus 1722 ~L~~~~g~-~f~p~l~~ii~~ll~~L~d~ 1749 (2629)
.+...++. .+.+|++.++..+++.+...
T Consensus 745 ~ii~~~~~~~~~~~l~~i~~~~~~~l~~~ 773 (959)
T d1wa5c_ 745 HIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (959)
T ss_dssp HHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHCchhhhHhHHHHHHHHHHHHHHhc
Confidence 88888875 46789999999999988754
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=3.9e-07 Score=130.14 Aligned_cols=699 Identities=12% Similarity=0.089 Sum_probs=364.5
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhh-CCC----Cc-----h
Q 000049 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGM-GEE----NF-----P 1656 (2629)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~~~-g~~----~~-----~ 1656 (2629)
++++|+.|.+.+..+... | .....|...+.++ ...+|..|+-.+...+... .+. .+ .
T Consensus 16 ~~~~~k~Ae~~L~~~~~~---p--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~ 84 (959)
T d1wa5c_ 16 IASTAKTSERNLRQLETQ---D--------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (959)
T ss_dssp SGGGHHHHHHHHHHHHTS---T--------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred ChHHHHHHHHHHHHHHcC---C--------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHH
Confidence 456899999999887542 1 2444455555443 4679999999998877653 211 12 2
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc------
Q 000049 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ------ 1730 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~------ 1730 (2629)
.+-..++..+.+. +...|...+.+++.++..-+++.|++++|.+.+.++++++..+.+++.++..+++.+...
T Consensus 85 ~Ik~~ll~~l~~~-~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~ 163 (959)
T d1wa5c_ 85 LIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDEL 163 (959)
T ss_dssp HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHH
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 2445566666544 356888899999999988777889999999999999999999999999999998754321
Q ss_pred ---hHhhHHhHHHHHHhh-------cCCCChhHHHHHH----HHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHH
Q 000049 1731 ---FQNYLQQVLPAILDG-------LADENESVRDAAL----GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1796 (2629)
Q Consensus 1731 ---f~p~l~~ii~~ll~~-------L~d~~~~VR~~al----~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~ 1796 (2629)
+...++.+.+.+... +.... ....+. ..+..+.+.+.......+.+.+.+ .-..-.
T Consensus 164 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 233 (959)
T d1wa5c_ 164 FLEIKLVLDVFTAPFLNLLKTVDEQITANE--NNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED--------NIQVGM 233 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH--------THHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH--------HHHHHH
Confidence 111222233333222 22111 111111 111111111100000000000000 000111
Q ss_pred HHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh
Q 000049 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876 (2629)
Q Consensus 1797 ~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~ 1876 (2629)
+.+..++...... . ..+++.. ..+....++......+..+....+
T Consensus 234 ~~~~~~l~~~~~~-----~--~~~~~~~----------------------------~~~~~~~~~~~i~~~l~~~~~~~~ 278 (959)
T d1wa5c_ 234 GIFHKYLSYSNPL-----L--EDPDETE----------------------------HASVLIKVKSSIQELVQLYTTRYE 278 (959)
T ss_dssp HHHHHHHSCCSCC-----C--C----------------------------------CCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhccccc-----c--cCchhhh----------------------------hhhHHHHHHHHHHHHHHHHHHHhH
Confidence 1122222110000 0 0000000 011123456666777777777777
Q ss_pred hhHhhhHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHH-HHHHHH
Q 000049 1877 KTLKEIMPVLMNTLISSLAS-----SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVC-IGLSEV 1950 (2629)
Q Consensus 1877 ~~l~~~l~~Ll~~L~~~L~~-----~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~-~aL~~l 1950 (2629)
..+.++++.+++.+...+.. ........+...+..+++..... .... +...-...+ ..+...
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----------~~~~--~~~~l~~i~~~li~~~ 346 (959)
T d1wa5c_ 279 DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYF----------EIFN--NESAMNNITEQIILPN 346 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHH----------GGGC--SHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHH----------HHHh--hhhHHHHHHHHHHHHH
Confidence 77788888877776655531 22334444444444433221100 0000 000000000 000000
Q ss_pred HHhhchhhHHHhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccC---c-CchhHHHHHH
Q 000049 1951 MASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED---D-QTSDTALDGL 2025 (2629)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~---~-~~~~~aL~~L 2025 (2629)
+ ...++....+...-...+..-..+. ....|.+|...+..+....+......+++.+.+.+.. . .......+
T Consensus 347 ~-~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e-- 423 (959)
T d1wa5c_ 347 V-TLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKD-- 423 (959)
T ss_dssp H-SCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHH--
T ss_pred h-cCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHH--
Confidence 0 1111111111111111111211111 2345777777888877766655444444443333311 1 00000000
Q ss_pred HHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHh------------CCChhhhHhhhHHHHHHhcCCCCHHHHHH
Q 000049 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA------------GPGLNFHLGTILPALLSAMGDDDMDVQSL 2093 (2629)
Q Consensus 2026 ~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~------------g~~l~~~l~~il~~Ll~~L~~~~~~vr~~ 2093 (2629)
....++++++... ...+.+++...+...+....+..+.+|..
T Consensus 424 --------------------------~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~ 477 (959)
T d1wa5c_ 424 --------------------------LYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD 477 (959)
T ss_dssp --------------------------HHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHH
T ss_pred --------------------------HHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHH
Confidence 0112223322110 11233444444444444445566889999
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhch-----------hhhhhhHHHHHHHHHHHh
Q 000049 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-----------LYLVDEAPNMISTLIVLL 2162 (2629)
Q Consensus 2094 a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~-----------~~~~~~~~~il~~Ll~ll 2162 (2629)
+.++++........+....+++.++..+.+++..+|..|+.++..++.... ..+.+|++.++..++..+
T Consensus 478 ~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l 557 (959)
T d1wa5c_ 478 AIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI 557 (959)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHH
Confidence 999999887766667788999999999999999999999999999986432 457789999999999988
Q ss_pred cCCChhH-----HHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHH
Q 000049 2163 SDSDSTT-----VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237 (2629)
Q Consensus 2163 ~d~d~~V-----~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~ 2237 (2629)
.+..... ......++..++...+....+. ...+++.+.+.
T Consensus 558 ~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~-----------------------------------~~~i~~~l~~~ 602 (959)
T d1wa5c_ 558 LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL-----------------------------------FPQLLAQFIEI 602 (959)
T ss_dssp HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG-----------------------------------HHHHHHHHHHH
T ss_pred HhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHH
Confidence 6554322 2335566666655443322221 11222222222
Q ss_pred H----hc-CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH
Q 000049 2238 L----IS-GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312 (2629)
Q Consensus 2238 L----~~-~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp 2312 (2629)
+ .+ .++.......++++.++...+++.+..+...+.+.+..++... ..+....++..+..+....+. +.+.+.
T Consensus 603 ~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 680 (959)
T d1wa5c_ 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQSAT-IPESIK 680 (959)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHHCSS-CCTTTG
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhCCC-ccHHHH
Confidence 2 12 2355666788999999988877777777777777777777653 445667788888888877654 333333
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHhcc----CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChH
Q 000049 2313 QLQTTFIK-CLQDSTRTVRSSAALALGKLSALS----TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387 (2629)
Q Consensus 2313 ~L~~~~~k-~L~d~~~~vR~~Aa~aLg~l~~~~----~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~ 2387 (2629)
++...++. .+.+.... -......+..++... .....++.-+...+...+ ....+..-+..++...+.....+
T Consensus 681 ~l~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~ 757 (959)
T d1wa5c_ 681 PLAQPLLAPNVWELKGN-IPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRP 757 (959)
T ss_dssp GGHHHHTSGGGGCCTTT-HHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGG
T ss_pred HHHHHHhhHHHHHHhhh-HHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHh
Confidence 34444433 22222222 223333443333322 223344444433343322 12345566777777776554467
Q ss_pred HHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhcCChh
Q 000049 2388 VKIRVYSVLKDLVYHD-DDHVRVSAASILGIMSQCMEDG 2425 (2629)
Q Consensus 2388 ~~~~i~~~L~~~l~~~-~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2629)
+.+.++..+...+... ...+......+++.++...+++
T Consensus 758 ~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (959)
T d1wa5c_ 758 YIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796 (959)
T ss_dssp GHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHH
Confidence 8899998888887664 5666667777777777654443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.8e-10 Score=148.41 Aligned_cols=464 Identities=15% Similarity=0.126 Sum_probs=287.8
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhchhhh
Q 000049 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE----GVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2073 ~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~----~~~~ll~~Ll~~l~-d~~~~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
...+|.|++.|++++..+|..+..++..+...-... .-..+++.++..+. ..++.++..++.++..++.+.....
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 456789999999999999999999998886432111 11346777777774 4568899999999999875432211
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccc
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l 2227 (2629)
.-.-...++.|+.++.++++.++..|..+|..++...+.. ++.+..
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~---------~~~~~~------------------------- 141 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA---------KMAVRL------------------------- 141 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH---------HHHHHH-------------------------
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchh---------hhHHHh-------------------------
Confidence 1111246889999999999999999999999987654321 011100
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
...+|.++..+.+++++++..++.+++.++.........-.-....++|++.+.......++..+..++..+... + ..
T Consensus 142 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~-~~ 219 (529)
T d1jdha_ 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-S-SN 219 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-T-TH
T ss_pred cCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-c-cc
Confidence 124566777778889999999999999998653322122222345678888887665677888888888776431 1 11
Q ss_pred cC-ch-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc---CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC
Q 000049 2308 KP-FL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALS---TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2629)
Q Consensus 2308 ~p-~l-p~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~---~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2629)
++ +. ....+.+.+.+.+++..++..++.++..+.... ......++.|+..++..+..++..++.+|..+......
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~ 299 (529)
T d1jdha_ 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred cchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhH
Confidence 11 11 124567778888889999999999999885432 23467899999999988999999999999887643111
Q ss_pred CcChHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhcCChhH-HHHH------HHHHHhhcCC-CCchhhHhHHHH
Q 000049 2383 SVSSAVKIRVYSVLKDLV--YHDDDHVRVSAASILGIMSQCMEDGQ-LADL------LQELLNLASS-PSWAARHGSVLV 2452 (2629)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l--~~~~~~vr~~aa~~Lg~L~~~~~~~~-~~~~------l~~ll~~~~~-~~~~~~~~~~~~ 2452 (2629)
..........+..+...+ ....+.++..++.+++.++...+..+ .... ++.+...+.. .++.....+..+
T Consensus 300 ~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~ 379 (529)
T d1jdha_ 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHH
Confidence 100011122233333333 24567888889999999886655332 1111 2223333332 333333333334
Q ss_pred HHHHHhhCCcc---ccCChhHHHHHHHHHhhhcCCCh----------------------hHHHhHHHHhHHHHhhhhhcC
Q 000049 2453 FATFLRHNPSA---ISMSPLFLSILDRLKSSLKDEKF----------------------PLREASTKALGRLLLHQIQSG 2507 (2629)
Q Consensus 2453 l~~~l~~~p~~---~~~~~~~~~i~~~l~~~~~~~~~----------------------~ir~~a~~alg~ll~~~~~~~ 2507 (2629)
+..+.. ++.. +.+.. .++.+.+.+.+... .+++.+..+++.+......+
T Consensus 380 l~~l~~-~~~~~~~l~~~g----~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r- 453 (529)
T d1jdha_ 380 IRNLAL-CPANHAPLREQG----AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR- 453 (529)
T ss_dssp HHHHTT-SGGGHHHHHHTT----HHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHH-
T ss_pred Hhhcch-hhhhhhhhhhcc----cHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHH-
Confidence 433322 2221 11222 33344433332222 33344444444332221110
Q ss_pred CCCchhh--HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--HHHHHHHHhhhcCCcchhhhhHHHHHHH
Q 000049 2508 PANTTVV--VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVH 2583 (2629)
Q Consensus 2508 ~~~~~~l--~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~a~~~ 2583 (2629)
..+ ...++.|+..+.+++.++|+.++.++..+++. ++ .+..+ ...++.|.+.+.+.|..|+.++-.|+..
T Consensus 454 ----~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~-~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ 527 (529)
T d1jdha_ 454 ----IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527 (529)
T ss_dssp ----HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HH-HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred ----HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-hh-hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 111 23677889989899999999999999999864 22 22222 3368888889999998898777766654
Q ss_pred H
Q 000049 2584 A 2584 (2629)
Q Consensus 2584 l 2584 (2629)
|
T Consensus 528 l 528 (529)
T d1jdha_ 528 M 528 (529)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.8e-09 Score=143.52 Aligned_cols=460 Identities=12% Similarity=0.083 Sum_probs=293.3
Q ss_pred hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhcc-----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC-cch
Q 000049 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISS 1373 (2629)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~-----~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~~ 1373 (2629)
..++.|++.|++.+..++..++..+..+...-.. .....++.++..|.+.++...+..|+.+|..+...-. ...
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 4478899999999999999999999887643211 1246788888888777778899999999998875322 122
Q ss_pred hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000049 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~-v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
+...+.++.|.+.+.+. +...+..|+.++..++...+..-... -...+|.++..++++++.++..+..++..+...-.
T Consensus 97 i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 175 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence 22346788888888876 78899999999999887654311111 23578999999999999999999999988865422
Q ss_pred HHh---H-HhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1453 AQG---V-KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1453 ~~~---v-~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
... . ...++.++..+.+. ....+..++.++..++........-.-.+.++.+...+.+.+++++..++.++..+.
T Consensus 176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls 255 (529)
T d1jdha_ 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence 221 1 34577777777654 457778888888888754322211112467888999999999999999999998886
Q ss_pred hhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000049 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2629)
Q Consensus 1528 ~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~ 1607 (2629)
....... .....++.+.+.+.+.+..++..++.++++++..
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~- 296 (529)
T d1jdha_ 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred ccccchh--------------------------------------hhhhcchhhhhhcccccHHHHHHHHHHHHhhccc-
Confidence 4332110 0112345555556666667777888888877642
Q ss_pred CCCCc-ccchHhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCChHHHHH
Q 000049 1608 TEPKD-MIPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2629)
Q Consensus 1608 ~~~~~-l~~~l~~ll~~L~~~L~--d~~~~VR~~A~~aL~~l~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~R~~ 1677 (2629)
+++. ..-.-...++.+...+. .+.++++..+..+++.++...... .....++.++..+..+........
T Consensus 297 -~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~ 375 (529)
T d1jdha_ 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -hhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHH
Confidence 2110 00011234555555543 456789999999999887533221 012346677777766555544555
Q ss_pred HHHHHHHHHHhhChh-HH--HhHhHHHHHhhcCC----------------------ChhhHHHHHHHHHHhhhhhccchH
Q 000049 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1678 a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~----------------------~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
++..+..+...-... .+ ...+|.+++.+.+. .+.+.+.++.++..++......
T Consensus 376 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r-- 453 (529)
T d1jdha_ 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-- 453 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHH--
T ss_pred HHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHH--
Confidence 555565554322111 11 22344444433221 1345555666665555432211
Q ss_pred hhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchh--hhHHHHHhhccCCCchHHHHHHHHHHHHH
Q 000049 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2629)
Q Consensus 1733 p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i--~~llp~l~~~l~d~~~~vR~sa~~ll~~l 1802 (2629)
..+ ...++++.+.+.++++++|..+..++..+...-. .+.+ .-.++.+.+.+.+.++.+|..+..++..+
T Consensus 454 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 112 2467889999999999999999988877643210 1111 11567788888899999999888776653
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=2e-09 Score=139.03 Aligned_cols=393 Identities=15% Similarity=0.160 Sum_probs=259.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
+..+++.+..+++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.+ +++.++..++.+|..++...++....
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 94 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence 44456678888999999999999877653332 222 3589999999965 45788999999999999776654322
Q ss_pred h-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhH--HhHHHHHHhccCCCChhHHHHHHHHHhccccccCC
Q 000049 1496 C-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2629)
Q Consensus 1496 ~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~ 1570 (2629)
. -.+++|.+..++.++++++++.|+++|+.++..-.+ ..+ ...++.++..+..++...
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~----------------- 157 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST----------------- 157 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG-----------------
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhccccc-----------------
Confidence 2 256899999999999999999999999999853211 011 233444444443332110
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
........+...+.+++... .......+...+++.+..++.+++++++..++.+++.++...
T Consensus 158 -----------------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 219 (434)
T d1q1sc_ 158 -----------------LACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 219 (434)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTCCC-TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred -----------------chHHHHHHHHHHHHHHhhcc-cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh
Confidence 01123334455666666532 112223356678899999999999999999999999987642
Q ss_pred CCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHHHHHHHH
Q 000049 1651 GEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2629)
Q Consensus 1651 g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a~~~l~~ 1722 (2629)
.+. ....++|.+.+.+.++. ...+..++..+..++...... . + ...++.+...+.++++.+|..++.++..
T Consensus 220 ~~~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~ 298 (434)
T d1q1sc_ 220 NERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 298 (434)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhHHHHhhcccchhcccccccch-hhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhh
Confidence 221 13457788888777654 456777777887776432211 1 1 4567778888899999999999999999
Q ss_pred hhhhhccchHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-----HHHHHhhccCCCchHHHHHHH
Q 000049 1723 LPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-----LLPAVEDGIFNDNWRIRQSSV 1796 (2629)
Q Consensus 1723 L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~-----llp~l~~~l~d~~~~vR~sa~ 1796 (2629)
++........... ..++|.+...+.+.+..+|..+..++..+......+.... +++.+.+.+.+.+++++..++
T Consensus 299 l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l 378 (434)
T d1q1sc_ 299 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378 (434)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred hccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence 9864333222222 2478899999998899999999999988876554443322 477788888888999999999
Q ss_pred HHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHH
Q 000049 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2629)
Q Consensus 1797 ~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2629)
..+..++...... . ..+.... ..+..| .+..+....++.+.+|++.|..++..+
T Consensus 379 ~~l~~ll~~~~~~-------------~-~~~~~~~-~~~~~~------~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 379 DAISNIFQAAEKL-------------G-ETEKLSI-MIEECG------GLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHHHHHHHHHTT-------------T-CHHHHHH-HHHHTT------SHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------------C-CcHHHHH-HHHHcC------CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9998887542111 0 0111111 122222 111222224667888999998888654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=4e-09 Score=136.07 Aligned_cols=391 Identities=16% Similarity=0.144 Sum_probs=247.3
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
-++.+++.+++.+++++..|+.++..+...-.++.++.++ -..++|
T Consensus 14 ~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~----------------------------------~~g~i~ 59 (434)
T d1q1sc_ 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII----------------------------------RAGLIP 59 (434)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHH----------------------------------HTTCHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH----------------------------------HCCCHH
Confidence 3555677889899999999999999887644433221100 012456
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCccc-chHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--C--
Q 000049 1580 IVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--E-- 1653 (2629)
Q Consensus 1580 ~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~--~-- 1653 (2629)
.|.+.+.+ .++++|..++.++.+++.. .++... -.-...+|.+...+.+++++++..|+.+|+.++..-.+ .
T Consensus 60 ~Lv~lL~~~~~~~v~~~a~~~L~~la~~--~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 137 (434)
T d1q1sc_ 60 KFVSFLGKTDCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137 (434)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHhcC--ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHH
Confidence 66666643 3467888899999998753 211111 11245788899999999999999999999998753221 1
Q ss_pred CchhhHHHHHHHhccCCCh----HHHHHHHHHHHHHHHhhCh----hHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 000049 1654 NFPDLVSWLLDALKSDNSN----VERSGAAQGLSEVLAALGT----VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~----~~R~~a~~~L~~i~~~~g~----~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~ 1725 (2629)
.-...++.++..+...... ......+..++.++..... .....++|.+...+.+.++.++..++.++..++.
T Consensus 138 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~ 217 (434)
T d1q1sc_ 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 217 (434)
T ss_dssp HHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccch
Confidence 1134566677776654322 1122334445555443221 2346788888888999999999999999988875
Q ss_pred hhccchHhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1726 SLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1726 ~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
..... .+.+ ..++|.+.+.+.+++..++..++.++..++.... ..+
T Consensus 218 ~~~~~-~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~--------------------~~~----------- 265 (434)
T d1q1sc_ 218 GPNER-IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD--------------------EQT----------- 265 (434)
T ss_dssp SCHHH-HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH--------------------HHH-----------
T ss_pred hhhhh-HHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhh--------------------HHH-----------
Confidence 42221 1111 2356666666666666666666555444321100 000
Q ss_pred HhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH
Q 000049 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883 (2629)
Q Consensus 1804 ~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2629)
..+.+ . .++..+...+.+.+..+|..|+.++..++.+.+.....+.
T Consensus 266 ---------------------------~~~~~-~------~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 311 (434)
T d1q1sc_ 266 ---------------------------QKVID-A------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 311 (434)
T ss_dssp ---------------------------HHHHH-T------TGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ---------------------------HHHHh-c------cccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHh
Confidence 00000 0 0112222334566778999999999999876654433333
Q ss_pred H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch-----hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch-
Q 000049 1884 P-VLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK- 1956 (2629)
Q Consensus 1884 ~-~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~-----l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~- 1956 (2629)
. .+++.++..+.+++..+|..|..+++.++....... -..+++.|...+.+++++++..++.++..++.....
T Consensus 312 ~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~ 391 (434)
T d1q1sc_ 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 391 (434)
T ss_dssp HTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 2 367788888899999999999999999987654432 234578888889999999999999999888753321
Q ss_pred ---hhHHHhHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000049 1957 ---SQLLSFMD--ELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1957 ---~~l~~~l~--~ll~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2629)
..+...+. .+++.+.....+++++++..|.+.+...
T Consensus 392 ~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 392 GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp TCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11222222 2456666666778999999988777553
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=9e-08 Score=125.81 Aligned_cols=347 Identities=14% Similarity=0.132 Sum_probs=236.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCchhHH-HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHh-
Q 000049 1380 AATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG- 1455 (2629)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~-~~~~~~v-~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~- 1455 (2629)
++.+.+.+.+. +...+..|+..+..+...-. ......+ ..++|.++..+. +.++.++..|..++..++...+...
T Consensus 78 l~~~~~~~~s~-~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 78 LPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp HHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44455556555 66667667666655432111 1111122 246889998886 5678899988888888765433321
Q ss_pred -H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1456 -V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1456 -v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
+ ..++|.++..|.+++..++..++.+|+.++...+..-... -..+++.+..++.+.++.++..++++|..++....
T Consensus 157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~ 236 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 236 (503)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence 1 3578889999999999999999999999997665432111 24678889999999999999999999999986432
Q ss_pred c-hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC
Q 000049 1532 N-PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2629)
Q Consensus 1532 ~-~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2629)
. +.. .....++|.+...+.+.+++++..++.++..++.. ..
T Consensus 237 ~~~~~------------------------------------~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~--~~ 278 (503)
T d1wa5b_ 237 PQPDW------------------------------------SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQ 278 (503)
T ss_dssp SCCCH------------------------------------HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CH
T ss_pred cchHH------------------------------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC--Cc
Confidence 1 110 01123445555555556667777777777777642 11
Q ss_pred Ccccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000049 1611 KDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2629)
Q Consensus 1611 ~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i 1685 (2629)
+.... .-..+++.+...+.++++.++..++.+++.++...+.. .-..+++.+...+.+.. ...|..++.+++.+
T Consensus 279 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~i~~~~~~~l~nl 357 (503)
T d1wa5b_ 279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNI 357 (503)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 11111 12357888899999999999999999999998643221 11356777777776554 55788888999888
Q ss_pred HHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc--chHhhH--HhHHHHHHhhcCCCChhHHHHH
Q 000049 1686 LAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYL--QQVLPAILDGLADENESVRDAA 1757 (2629)
Q Consensus 1686 ~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~--~f~p~l--~~ii~~ll~~L~d~~~~VR~~a 1757 (2629)
+...... . . ..++|.+++.+.+.+..+|..++.++..++..... ....++ ..+++++...|...+.++...+
T Consensus 358 ~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~ 437 (503)
T d1wa5b_ 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 437 (503)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred hhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence 6532211 1 1 46788899999999999999999999998865432 222333 2478889999988888888888
Q ss_pred HHHHHHHHH
Q 000049 1758 LGAGHVLVE 1766 (2629)
Q Consensus 1758 l~al~~iv~ 1766 (2629)
++++..++.
T Consensus 438 L~~l~~ll~ 446 (503)
T d1wa5b_ 438 LDALENILK 446 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=8.3e-08 Score=126.17 Aligned_cols=393 Identities=17% Similarity=0.138 Sum_probs=246.6
Q ss_pred ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhh
Q 000049 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2629)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~ 1576 (2629)
....++.+...++..+...+..|+..+..+...-.++.++.+ .-..
T Consensus 74 ~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~i----------------------------------i~~g 119 (503)
T d1wa5b_ 74 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVV----------------------------------IQAG 119 (503)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHH----------------------------------HHTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHH----------------------------------HHCC
Confidence 344566677778888888888888877766543222222110 0012
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCCcccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--
Q 000049 1577 LVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-- 1652 (2629)
Q Consensus 1577 i~p~L~~~L~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~-- 1652 (2629)
++|.|...+. +.+..++..++.++.+++.. ++..... .-..+++.+...+.+++.+++..|+.+|+.++....+
T Consensus 120 ~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~--~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r 197 (503)
T d1wa5b_ 120 VVPRLVEFMRENQPEMLQLEAAWALTNIASG--TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197 (503)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence 4555555554 34567888888888888763 2111111 1234788888999999999999999999998863221
Q ss_pred CC--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh----hHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhh
Q 000049 1653 EN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT----VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2629)
Q Consensus 1653 ~~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~----~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~ 1726 (2629)
+. -...++.++..+.+.. ...+..++..+..++..... .....++|.+...+.+.++.++..++.++..++..
T Consensus 198 ~~l~~~~~~~~L~~ll~~~~-~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~ 276 (503)
T d1wa5b_ 198 DYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 276 (503)
T ss_dssp HHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhcccccchhhcccCC-HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC
Confidence 11 2346777777776554 44666777888888764322 13467889999999999999999999999988764
Q ss_pred hccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHh
Q 000049 1727 LGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2629)
Q Consensus 1727 ~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~ 1805 (2629)
........+. .+++.+...+.+++..++..++.++..+......
T Consensus 277 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~----------------------------------- 321 (503)
T d1wa5b_ 277 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL----------------------------------- 321 (503)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-----------------------------------
T ss_pred CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHH-----------------------------------
Confidence 3332222332 3566666666666666666655555443211000
Q ss_pred hcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH-H
Q 000049 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-P 1884 (2629)
Q Consensus 1806 ~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~ 1884 (2629)
....+.+ . .+++.+...+.+.+..+|..++.++..++.+.+.....++ .
T Consensus 322 -----------------------~~~~~~~-~------~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~ 371 (503)
T d1wa5b_ 322 -----------------------QTQVVIN-A------GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 371 (503)
T ss_dssp -----------------------HHHHHHH-T------THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred -----------------------HHHhhhc-c------chHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHc
Confidence 0000000 0 1333344445666778999999999998877665444433 3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc--h-----hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch-
Q 000049 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGER--V-----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK- 1956 (2629)
Q Consensus 1885 ~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~--~-----l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~- 1956 (2629)
.+++.++..+.+.+..++..|++++..++...... . -..+++.+...+...++++...++.+|..++.....
T Consensus 372 ~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~ 451 (503)
T d1wa5b_ 372 NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 451 (503)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888889999999999999988754321 1 244667788888888899888888888777642211
Q ss_pred --------hhHHHhH--HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000049 1957 --------SQLLSFM--DELIPTIRTALCDSILEVRESAGLAFST 1991 (2629)
Q Consensus 1957 --------~~l~~~l--~~ll~~l~~~L~d~d~~VR~~A~~al~~ 1991 (2629)
......+ ...+..+.....+++.++++.|...+..
T Consensus 452 ~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~ 496 (503)
T d1wa5b_ 452 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 496 (503)
T ss_dssp HHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0011111 1234444445556788888887665544
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=3.4e-07 Score=109.37 Aligned_cols=250 Identities=13% Similarity=0.058 Sum_probs=180.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchH
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv 1501 (2629)
.+.++.++.|+++.||..|..++..+. -...+|.+++.+.+++|.+|..++.+|+.+...... .+.++
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~-------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~ 88 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-----EDNVF 88 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-----HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-----ccchH
Confidence 345678899999999999999887762 246788899999999999999999999887543221 12223
Q ss_pred HHHh-hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHH
Q 000049 1502 PKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1502 p~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
+.+. ..++|+++.||..|+.+|+.++.... .....+++.+...+.|++..+| .++..+... . -...++
T Consensus 89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~------~---~~~~~~ 158 (276)
T d1oyza_ 89 NILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVI------N---DKATIP 158 (276)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHccccc-hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhc------c---hHHHHH
Confidence 3333 35789999999999999999986432 2346788889999999988887 455555421 1 123467
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll 1659 (2629)
.+...+.+.++.++..+...++.+... .....+.+...+.++++.+|..+..+++.+. ....+
T Consensus 159 ~l~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-------~~~~~ 221 (276)
T d1oyza_ 159 LLINLLKDPNGDVRNWAAFAININKYD----------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRVL 221 (276)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGGH
T ss_pred HHHHhcccccchhhhhHHHHHHhhhcc----------ccccchhhhhhhhhhhhhhhhhhccccchhh-------hhhhH
Confidence 777888888899998888777765431 1345667778889999999999999887643 24567
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC-CChhhHHHHHHHH
Q 000049 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 1720 (2629)
Q Consensus 1660 ~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~vR~~a~~~l 1720 (2629)
|.+++.+.++. +|..++.+|+++. . +..+|.+.+.+.+ .+..+|..++..+
T Consensus 222 ~~L~~~l~d~~---vr~~a~~aL~~ig----~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 222 SVLCDELKKNT---VYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HHHHHHHTSSS---CCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHhCChH---HHHHHHHHHHHcC----C---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 88888877542 6778888887763 2 2456667666655 4788998887765
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=4e-07 Score=108.68 Aligned_cols=253 Identities=17% Similarity=0.111 Sum_probs=176.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2629)
..+.|.+.+++. ++.+|..|+.+|+.+. . ...+|.++..+.|+++.||..|..++..+.... ..-..
T Consensus 20 ~~~~L~~~L~d~-~~~vR~~A~~~L~~~~----~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~--~~~~~ 86 (276)
T d1oyza_ 20 NDDELFRLLDDH-NSLKRISSARVLQLRG----G------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCEDN 86 (276)
T ss_dssp CHHHHHHHTTCS-SHHHHHHHHHHHHHHC----C------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTHHH
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHhhC----C------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccccc
Confidence 345667788876 8999999999877653 2 357888899999999999999988887663211 11233
Q ss_pred hHHHHHh-hhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1459 VLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1459 ilp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
+++.++. .+.+++|.+|..++..|+.+....+. ..+.+++.+...+.|+++.||..++.+++.+... .
T Consensus 87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~-------~ 155 (276)
T d1oyza_ 87 VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------A 155 (276)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchH-------H
Confidence 4444444 35678999999999999998765433 2356788888899999999999999888776532 2
Q ss_pred HHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1538 LVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
.++.+...+.+.+..++. +...+..... ......+.+...+.+.++.+|..+...++.+. .
T Consensus 156 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~------- 217 (276)
T d1oyza_ 156 TIPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D------- 217 (276)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C-------
T ss_pred HHHHHHHhcccccchhhhhHHHHHHhhhc-------cccccchhhhhhhhhhhhhhhhhhccccchhh----h-------
Confidence 345566666677666652 2222221000 11335566777888999999999988887653 2
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHH
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~ 1683 (2629)
+..++.+...+.|+ .||..++.+||.+.. +..+|.|...+.++++..+|..++..|.
T Consensus 218 -~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~-------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 218 -KRVLSVLCDELKKN--TVYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp -GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC-------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 23566777777764 699999999998642 4578888888877655667888777653
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=0.00012 Score=92.82 Aligned_cols=398 Identities=12% Similarity=0.097 Sum_probs=201.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc--hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-
Q 000049 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE- 1653 (2629)
Q Consensus 1577 i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~--~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~- 1653 (2629)
.+|.+.+.|++.+++++..++.+++++|.. + ++... .-...+|.|.+++.++++++|..|+.+|+.++....+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~--~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--D-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--C-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcC--C-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 478999999999999999999999999863 2 12222 22346889999999999999999999999998532211
Q ss_pred ---CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--HHHhHhHHHHHhh----------------cCCChhh
Q 000049 1654 ---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNC----------------SHQRASV 1712 (2629)
Q Consensus 1654 ---~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~l~~llp~l~~~l----------------~~~~~~v 1712 (2629)
.-...++.++..+.+..+...|..++..+..+....... .....++.+...+ ...+..+
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 112347788888877666667888888888887643322 1122223332221 2236678
Q ss_pred HHHHHHHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCC------ChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccC
Q 000049 1713 RDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE------NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785 (2629)
Q Consensus 1713 R~~a~~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~------~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~ 1785 (2629)
+..++.++..+....... ..-....+++.+...+... ...........+......... .....+..+.....
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA-EVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH-HSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHhhhh
Confidence 888888777666432110 0000112334443333211 001111111111110000000 00000111100000
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHH-hhccCccHHHHHHH
Q 000049 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVRQAA 1864 (2629)
Q Consensus 1786 d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~-~~~~D~~~~VR~aA 1864 (2629)
+. .........++........................ . ..+ .....++.+. ......+..++..+
T Consensus 239 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~---~~~~~i~~l~~l~~~~~~~~~~~~~ 304 (457)
T d1xm9a1 239 NA--YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG-S--------GWL---YHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp -----------------------------CCCCCSSCCG-G--------GGG---GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hh--hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHH-H--------HHH---HhhcHHHHHHHHHhcccchHHHHHH
Confidence 00 00000000111000000000000000000000000 0 000 0111222221 12234456677777
Q ss_pred HHHHHHHHhcChhhHhhhH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc--hhhhHHHHHhhhcCC--
Q 000049 1865 LHVWKTIVANTPKTLKEIM------PVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPILSRGLKD-- 1934 (2629)
Q Consensus 1865 ~~~l~~l~~~~~~~l~~~l------~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~--~l~~llp~L~~~L~d-- 1934 (2629)
...+..+..+......... ...++.++..+.++++.+|..++.+++.+....... +....+|.+...+..
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~ 384 (457)
T d1xm9a1 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccc
Confidence 7777777654432211111 134677888899999999999999999987532211 223344555544432
Q ss_pred ----CChhHHHHHHHHHHHHHHhhchhhHHHhH-HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHH
Q 000049 1935 ----PSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD-SILEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1935 ----~~~~vR~~a~~aL~~li~~~~~~~l~~~l-~~ll~~l~~~L~d-~d~~VR~~A~~al~~l~ 1993 (2629)
.+++++..+|.+|..+..... +...... ...++.+...+.+ .++.++++|+.++..+.
T Consensus 385 ~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 385 GNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred cCcCCcHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 346789999999998764332 2222222 3467788887765 46889999988887764
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00024 Score=89.98 Aligned_cols=400 Identities=15% Similarity=0.064 Sum_probs=198.3
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCc--ch
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SS 1373 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~ 1373 (2629)
.++.+++.|++++++||..++.+|..+...-.+.. ...++.|.+.|. +++...|..|+.+|..++..... ..
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46889999999999999999999998864322211 234667776664 55678999999999999853322 12
Q ss_pred hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc----------------CCCCHHHH
Q 000049 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF----------------SDQVVAVR 1437 (2629)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l----------------~D~~~~VR 1437 (2629)
+...+.++.+.+.+.+..+...|..+..++..++...... ......-++.++..+ ...+..++
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 2233456677777766668889999999999988654321 112222233333222 22345566
Q ss_pred HHHHHHHHHHHHhhcHHh----HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCH
Q 000049 1438 EAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513 (2629)
Q Consensus 1438 ~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~ 1513 (2629)
..+..++..+...-.... ...++|.++..+.+...... ........+...+.+...
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~ 220 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR--------------------CDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTC--------------------TTCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhh--------------------hHHHHHHHHHHHHhhhhh
Confidence 655555544432211110 01122322222211000000 000000001111111111
Q ss_pred HHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhc--cccccCChhhhhhHHHHHHHhhc-CCC
Q 000049 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQT--TFVNTVDAPSLALLVPIVHRGLR-ERS 1589 (2629)
Q Consensus 1514 ~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~--~~~~~~~~~~l~~i~p~L~~~L~-d~~ 1589 (2629)
.++......+..+.....+.......... +........ ......... .............+++.+...+. ..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~ 297 (457)
T d1xm9a1 221 RLDAEVPTRYRQLEYNARNAYTEKSSTGC---FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297 (457)
T ss_dssp THHHHSCCHHHHHHHTC-------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHhhhh---hhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccc
Confidence 11221111121111111111000000000 000000000 000000000 00000111112234555554443 346
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCc----ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--CchhhHHHHH
Q 000049 1590 AETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLL 1663 (2629)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~----l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~--~~~~ll~~Ll 1663 (2629)
..++..+..++..++........ ..-.....++.+...+.++++.+|..++.+++.++..-... .....++.++
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li 377 (457)
T d1xm9a1 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHH
Confidence 77888888888877653111000 00012357889999999999999999999999998632211 1234566676
Q ss_pred HHhccCC-----ChHHHHHHHHHHHHHHHhhChh--HH--HhHhHHHHHhhcCC-ChhhHHHHHHHHHHhhh
Q 000049 1664 DALKSDN-----SNVERSGAAQGLSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPR 1725 (2629)
Q Consensus 1664 ~~L~~~~-----~~~~R~~a~~~L~~i~~~~g~~--~l--~~llp~l~~~l~~~-~~~vR~~a~~~l~~L~~ 1725 (2629)
..+.... +..++..++..+..++...... .+ ...++.+++.+.+. ++.+++++..++..|..
T Consensus 378 ~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~ 449 (457)
T d1xm9a1 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence 6665322 2345666777787776543322 12 34578888877654 67899999999988753
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00019 Score=84.17 Aligned_cols=177 Identities=18% Similarity=0.151 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHhhhCc-chhhhh-cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHH
Q 000049 1352 YGERRGAAFGLAGVVKGFGI-SSLKKY-GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVA 1428 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~-~~l~~~-~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v-~~ilp~ll~~ 1428 (2629)
...|..|...|..++..... ..+... .+.+.+..++++. ++..|..|+.+++.++..-+..-...+ ...+|.++..
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 34566666666666643211 111111 2333344455555 799999999999999975442111122 2578899998
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcHHh--H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc-cchHH
Q 000049 1429 FS-DQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2629)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~~~~--v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp 1502 (2629)
+. +.++.+|..+..++..++...++.. + ...++.++..+.+.+..++..++.+|+.++...|....... .+.+|
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~ 189 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence 85 7789999999999999876554332 1 34688889999999999999999999999887766433322 35789
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
.+..+++++++.+|..|+.+|..++..
T Consensus 190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 190 QLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999864
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00018 Score=84.35 Aligned_cols=179 Identities=14% Similarity=0.050 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHhhcHH-hH--HhhHHHHHh-hhccCChhhhHHHHHHHHHHHhhCchhhh-hhccchHHHHhhhh
Q 000049 1434 VAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVL 1508 (2629)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~-~v--~~ilp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L 1508 (2629)
..+|..|..++..+++..... .+ ..-++.++. .+.+++..+|..++.+|+.++...|.... -.-.+.+|.++.++
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL 110 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 110 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence 456666777776666533211 11 122455554 57788899999999999999987664322 22357889999988
Q ss_pred c-CCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcC
Q 000049 1509 T-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2629)
Q Consensus 1509 ~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d 1587 (2629)
. ++++.||..|+.+|..++....+.. ..+ .....++.+.+.+.+
T Consensus 111 ~~~~~~~v~~~a~~aL~~l~~~~~~~~-----------------------~~~------------~~~~gi~~L~~lL~~ 155 (264)
T d1xqra1 111 DRDACDTVRVKALFAISCLVREQEAGL-----------------------LQF------------LRLDGFSVLMRAMQQ 155 (264)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHH-----------------------HHH------------HHTTHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHhccchhhH-----------------------HHH------------HHhhhhhHHHHHHhc
Confidence 5 6789999999999999986432110 000 011245666677777
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
.+..++..++.++.+++.. .+.....+. ...+|.+..++.++++++|..|..+|+.++..
T Consensus 156 ~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 156 QVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhc--cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 8889999999999999864 222222222 34789999999999999999999999999864
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.72 E-value=1.9e-06 Score=86.56 Aligned_cols=107 Identities=20% Similarity=0.327 Sum_probs=79.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhh
Q 000049 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2629)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L 1508 (2629)
|+|+++.||..|..+++.+ ++ ..++.+++.|.+++|.+|..++.+|+.+.. +..+|.+..++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l 62 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLL 62 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----CH----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhh
Confidence 5788888898887776544 22 345678888999999999999999876532 34678888899
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHH
Q 000049 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDIL 1560 (2629)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L 1560 (2629)
+|+++.||.+|+.+|+.++. ...+|.+...+.|++..+| .|+.+|
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999998853 2445666677777777776 344443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.29 E-value=0.00016 Score=71.95 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCC
Q 000049 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2629)
Q Consensus 1392 ~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2629)
|+.+|..|+.+|+.+ |. ..++.++..+.|+++.||..+..+++.+ .....+|.+.+.|.+++
T Consensus 5 ~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~-------~~~~~~~~L~~~l~d~~ 66 (111)
T d1te4a_ 5 NKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNF-------QDERAVEPLIKLLEDDS 66 (111)
T ss_dssp CCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGG-------CSHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhc-------chhhhHHHHHhhhccch
Confidence 567777777765542 22 2356677889999999999998887544 23457788899999999
Q ss_pred hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHH
Q 000049 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2629)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2629)
|.+|..++.+|+.+.. +..+|.|..+++|+++.||.+|..+|.
T Consensus 67 ~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 67 GFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp THHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998742 456788888999999999999999875
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.50 E-value=0.00035 Score=78.48 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=98.0
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHH-HHHHHhccccccCChhhhhhHHHHH
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIV 1581 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~a-l~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2629)
.|..+++|+++.||.+|.+.|+ . +.+...+.|++..+|.+ ...+. .+.|
T Consensus 70 ~L~~Ll~D~d~~VR~~AA~~Lp-------~-------~~L~~L~~D~d~~VR~~aa~~l~----------------~~~L 119 (233)
T d1lrva_ 70 ALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSALMFDEDREVRITVADRLP----------------LEQL 119 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGGTTTCSCHHHHHHHHHHSC----------------TGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHcC-------H-------HHHHHHhcCCChhHHHHHHhccC----------------HHHH
Confidence 4567889999999999876542 1 23556677888888743 22210 1234
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHH
Q 000049 1582 HRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661 (2629)
Q Consensus 1582 ~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~ 1661 (2629)
...+.|.++.+|..+...+ .. +.+..++.|+++.||..++.. .+.+ .
T Consensus 120 ~~Ll~D~d~~VR~~aa~~~-------~~------------~~L~~L~~D~d~~VR~~aA~~-------~~~~-------~ 166 (233)
T d1lrva_ 120 EQMAADRDYLVRAYVVQRI-------PP------------GRLFRFMRDEDRQVRKLVAKR-------LPEE-------S 166 (233)
T ss_dssp GGGTTCSSHHHHHHHHHHS-------CG------------GGGGGTTTCSCHHHHHHHHHH-------SCGG-------G
T ss_pred HHHhcCCCHHHHHHHHhcc-------ch------------hHHHHHhcCCCHHHHHHHHHh-------cCHH-------H
Confidence 4567888899998876431 10 122345678899999877653 2221 2
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHH
Q 000049 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2629)
Q Consensus 1662 Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ 1741 (2629)
+.. +.++....+|..++..+ |. +.+...+.+++|.||..+..- +-+.
T Consensus 167 L~~-l~~D~d~~VR~~aa~~L-------~~-------~~L~~l~~D~d~~VR~aaae~------------------~~~~ 213 (233)
T d1lrva_ 167 LGL-MTQDPEPEVRRIVASRL-------RG-------DDLLELLHDPDWTVRLAAVEH------------------ASLE 213 (233)
T ss_dssp GGG-STTCSSHHHHHHHHHHC-------CG-------GGGGGGGGCSSHHHHHHHHHH------------------SCHH
T ss_pred HHH-HccCCCHHHHHHHHHhc-------Cc-------HHHHHHHhCCCHHHHHHHHHh------------------ccHH
Confidence 222 22344566777766543 32 244556778899998766421 1234
Q ss_pred HHhhcCCCChhHHHHHH
Q 000049 1742 ILDGLADENESVRDAAL 1758 (2629)
Q Consensus 1742 ll~~L~d~~~~VR~~al 1758 (2629)
++..|.|+++.||.++.
T Consensus 214 ll~~L~D~d~~VR~aA~ 230 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIA 230 (233)
T ss_dssp HHHHCCCCCHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHH
Confidence 56678888888988765
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.47 E-value=0.00052 Score=77.01 Aligned_cols=159 Identities=23% Similarity=0.180 Sum_probs=96.2
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2629)
+..|...++|+++.||..++..|+. ..+..|.+.+++.+|..++..+ +...
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~--------------~~L~~L~~D~d~~VR~~aa~~l-------~~~~-------- 118 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYRLPR--------------EQLSALMFDEDREVRITVADRL-------PLEQ-------- 118 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCS--------------GGGGGTTTCSCHHHHHHHHHHS-------CTGG--------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCH--------------HHHHHHhcCCChhHHHHHHhcc-------CHHH--------
Confidence 3566778899999999999887652 1233444566788888777643 2222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2629)
|..++.++ +|.+|.++... .+. +.+...+.|+++.||.++... ++ .+
T Consensus 119 -L~~Ll~D~-d~~VR~~aa~~-------~~~----------~~L~~L~~D~d~~VR~~aA~~-------~~-------~~ 165 (233)
T d1lrva_ 119 -LEQMAADR-DYLVRAYVVQR-------IPP----------GRLFRFMRDEDRQVRKLVAKR-------LP-------EE 165 (233)
T ss_dssp -GGGGTTCS-SHHHHHHHHHH-------SCG----------GGGGGTTTCSCHHHHHHHHHH-------SC-------GG
T ss_pred -HHHHhcCC-CHHHHHHHHhc-------cch----------hHHHHHhcCCCHHHHHHHHHh-------cC-------HH
Confidence 23345565 78888776542 221 123345688899999876432 11 12
Q ss_pred HHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHH
Q 000049 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2629)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2629)
.+...+.++++.+|..++..++ .+.+..+++|+++.||.++.+.+ . +.
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L~-----------------~~~L~~l~~D~d~~VR~aaae~~-------~--------~~ 213 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRLR-----------------GDDLLELLHDPDWTVRLAAVEHA-------S--------LE 213 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHCC-----------------GGGGGGGGGCSSHHHHHHHHHHS-------C--------HH
T ss_pred HHHHHccCCCHHHHHHHHHhcC-----------------cHHHHHHHhCCCHHHHHHHHHhc-------c--------HH
Confidence 3445566777888777665432 13455677888888887776422 1 23
Q ss_pred HHhccCCCChhHH
Q 000049 1542 LLMGLTDPNDHTK 1554 (2629)
Q Consensus 1542 Ll~~l~d~~~~~r 1554 (2629)
++..+.|++..+|
T Consensus 214 ll~~L~D~d~~VR 226 (233)
T d1lrva_ 214 ALRELDEPDPEVR 226 (233)
T ss_dssp HHHHCCCCCHHHH
T ss_pred HHHHhCCCCHHHH
Confidence 4455666666665
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.09 E-value=0.081 Score=62.53 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhhc--
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD----QVVAVREAAECAARAMMSQLS-- 1452 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D----~~~~VR~aa~~al~~i~~~l~-- 1452 (2629)
-+.++.+.+.+++-. .-+ |...+..++... +--..+ +..++..+.+ .++.+|..++-+++.++...-
T Consensus 89 a~~~i~~~I~~~~ls-~~e-a~~~l~~l~~~~-~Pt~~~----l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~ 161 (336)
T d1lsha1 89 ALLFLKRTLASEQLT-SAE-ATQIVASTLSNQ-QATRES----LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 161 (336)
T ss_dssp HHHHHHHHHHTTCSC-HHH-HHHHHHHHHHTC-CCCHHH----HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCC-HHH-HHHHHHHHhccC-CCCHHH----HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC
Confidence 345666666555322 222 333444454322 212233 3333333333 467888888888888776431
Q ss_pred -----HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcC-------CCHHHHHHHH
Q 000049 1453 -----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-------THPKVQSAGQ 1520 (2629)
Q Consensus 1453 -----~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D-------~~~~VR~aA~ 1520 (2629)
...++.+...+.+....++-..+..++.+||++.. +..++.+..++.+ ....||.+|.
T Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi 231 (336)
T d1lsha1 162 TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAI 231 (336)
T ss_dssp CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHH
Confidence 12234444444455555666667778889998752 4556666666643 3678999999
Q ss_pred HHHHHHhhhcCchhH-HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhh-cCCCHHHHHHHH
Q 000049 1521 TALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-RERSAETKKKAA 1597 (2629)
Q Consensus 1521 ~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L-~d~~~~vr~~a~ 1597 (2629)
+||..+..... ..+ +.+++.+.+. +.+..+| .|+..+..+ .|... ++..+...+ .+++..|+....
T Consensus 232 ~Alr~~~~~~p-~~v~~~l~~i~~n~--~e~~EvRiaA~~~lm~t-------~P~~~-~l~~i~~~l~~E~~~QV~sfv~ 300 (336)
T d1lsha1 232 MALRNIAKRDP-RKVQEIVLPIFLNV--AIKSELRIRSCIVFFES-------KPSVA-LVSMVAVRLRREPNLQVASFVY 300 (336)
T ss_dssp HTTTTGGGTCH-HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHT-------CCCHH-HHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhhhcCc-HHHHHHHHHHHcCC--CCChHHHHHHHHHHHhc-------CCCHH-HHHHHHHHHHhCcHHHHHHHHH
Confidence 99999876432 122 3344444332 2224567 566665432 12222 222333333 566778877777
Q ss_pred HHHHHHhh
Q 000049 1598 QIVGNMCS 1605 (2629)
Q Consensus 1598 ~~l~~l~~ 1605 (2629)
..+.++..
T Consensus 301 S~l~~la~ 308 (336)
T d1lsha1 301 SQMRSLSR 308 (336)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 77777665
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=92.12 E-value=2.1 Score=49.80 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=89.0
Q ss_pred CChhhhHHHHHHHHHHHhhCchhh----hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhc
Q 000049 1470 KAWRTKQSSVQLLGAMAYCAPQQL----SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2629)
Q Consensus 1470 ~~w~~r~~a~~~L~~la~~~p~~l----~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~ 1545 (2629)
+++..+..+...+|.+++.....- ...++.+...+.+..+..+.+-+-.+.++||+++. | ..++.+...
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p---~~i~~l~~~ 211 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P---NSIKKIQRF 211 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G---GGHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----H---hHHHHHHHH
Confidence 578888999999999987421111 12223344444455566677777788999999873 2 345556555
Q ss_pred cCCC-------ChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH
Q 000049 1546 LTDP-------NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2629)
Q Consensus 1546 l~d~-------~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2629)
+.+. ...+| .|+.++.. +...........+++++.+ ...+.++|..|+..+-. ..|. .
T Consensus 212 l~~~~~~~~~~~~~vR~aAi~Alr~--~~~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~-----t~P~-----~ 277 (336)
T d1lsha1 212 LPGQGKSLDEYSTRVQAEAIMALRN--IAKRDPRKVQEIVLPIFLN--VAIKSELRIRSCIVFFE-----SKPS-----V 277 (336)
T ss_dssp STTSSSCCCCSCHHHHHHHHHTTTT--GGGTCHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHH-----TCCC-----H
T ss_pred hcccccccccccHHHHHHHHHHHHH--hhhcCcHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh-----cCCC-----H
Confidence 5432 23455 56665532 1111111112223333332 23467888888877643 1221 1
Q ss_pred hhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhhC
Q 000049 1618 GLLLPEVKKVL-VDPIPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1618 ~~ll~~L~~~L-~d~~~~VR~~A~~aL~~l~~~~g 1651 (2629)
.++..+...+ .+++..|+......|.++++.-.
T Consensus 278 -~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~ 311 (336)
T d1lsha1 278 -ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 311 (336)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred -HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence 1333444433 47788888888888877776433
|
| >d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: BC3264-like domain: Hypothetical protein EF3068 species: Enterococcus faecalis [TaxId: 1351]
Probab=83.60 E-value=3.8 Score=44.08 Aligned_cols=148 Identities=9% Similarity=0.043 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCCh
Q 000049 2389 KIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSP 2468 (2629)
Q Consensus 2389 ~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 2468 (2629)
.+.+...+..+..++.-+.|-.+...++.......++.+ +++..++. ..+.|+.-......+...+..++.
T Consensus 48 ~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~~l-~~~~~~~~--~~~~Wd~vD~~~~~i~~~~~~~~~------ 118 (213)
T d2b6ca1 48 KEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLEEV-VAFKAYVP--QKAWWDSVDAWRKFFGSWVALHLT------ 118 (213)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHH-HHGGGGTT--TTCSHHHHHHHHHHHHHHHHHSGG------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHHHH-HHHHHHHc--cCccHHHHHHHHHHHHHHHHHhhh------
Confidence 345556666677777778888888888888776665332 33333332 234566554333333232333332
Q ss_pred hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000049 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2629)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~ 2548 (2629)
++.+.+..-..|++...|..|+.+.- .. ... .+...++..+...+.|+..=||.+...+|+.++++.|
T Consensus 119 ---~~~~~l~~w~~s~~~w~rR~aiv~~l---~~-~~~-----~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~p 186 (213)
T d2b6ca1 119 ---ELPTIFALFYGAENFWNRRVALNLQL---ML-KEK-----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP 186 (213)
T ss_dssp ---GHHHHHHHHTTCSSHHHHHHHHHTTT---TC-GGG-----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHHHH---HH-HHc-----ccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHCH
Confidence 34566777789999999998765432 11 111 1234455555667789999999999999999999999
Q ss_pred hhhhhhHHH
Q 000049 2549 SAIMVHVAL 2557 (2629)
Q Consensus 2549 ~~v~~~l~~ 2557 (2629)
+.|.+++..
T Consensus 187 ~~v~~fl~~ 195 (213)
T d2b6ca1 187 QWVEELMKE 195 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887754
|