Citrus Sinensis ID: 000051
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2612 | 2.2.26 [Sep-21-2011] | |||||||
| Q92616 | 2671 | Translational activator G | yes | no | 0.963 | 0.942 | 0.338 | 0.0 | |
| Q54WR2 | 2667 | Translational activator g | yes | no | 0.867 | 0.850 | 0.330 | 0.0 | |
| Q10105 | 2670 | Translational activator g | yes | no | 0.685 | 0.670 | 0.338 | 0.0 | |
| P33892 | 2672 | Translational activator G | yes | no | 0.591 | 0.577 | 0.354 | 0.0 | |
| O94489 | 1047 | Elongation factor 3 OS=Sc | no | no | 0.101 | 0.254 | 0.340 | 6e-36 | |
| O14134 | 1057 | mRNA export factor elf1 O | no | no | 0.104 | 0.258 | 0.316 | 5e-32 | |
| P29551 | 1042 | Elongation factor 3 OS=Pn | N/A | no | 0.105 | 0.263 | 0.304 | 5e-32 | |
| P25997 | 1050 | Elongation factor 3 OS=Ca | N/A | no | 0.118 | 0.294 | 0.282 | 3e-27 | |
| P53978 | 1044 | Elongation factor 3B OS=S | no | no | 0.090 | 0.227 | 0.313 | 2e-26 | |
| P16521 | 1044 | Elongation factor 3A OS=S | no | no | 0.090 | 0.227 | 0.296 | 3e-26 |
| >sp|Q92616|GCN1L_HUMAN Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6 | Back alignment and function desciption |
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Score = 1326 bits (3431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 910/2685 (33%), Positives = 1442/2685 (53%), Gaps = 168/2685 (6%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S+TL A V+T+S K R+ I ++ + ++ L + T Y D S
Sbjct: 8 SETLKRFAGKVTTASVKERREIL-SELGKCVAGKDLPEGAVKGLCKLFCLTLHRYRDAAS 66
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVG---------CYRLLKWSCLL 117
R+A+ I++ L E T A L+ +++ S S G L W+CLL
Sbjct: 67 RRALQAAIQQ-LAEAQPEAT-AKNLLHSLQS-SGIGSKAGVPSKSSGSAALLALTWTCLL 123
Query: 118 LSKSQFATVSK---NALCRVAAAQASLLHIVMQRSFRER-RACKQTFFHLFSQSPDIYKT 173
+ + F + +K + ++ Q LL V+ S + + L+ ++P + +
Sbjct: 124 V-RIVFPSRAKRQGDIWNKLVEVQCLLLLEVLGGSHKHAVDGAVKKLTKLWKENPGLVEQ 182
Query: 174 YTDELKDARIPYKHSPELICLLLEFLS--KSPSLFEKCRPIFLDIYVKAVLNAKEKPMKG 231
Y + P ++ ++ LL++F + K + + + LD Y+K +L +K KP K
Sbjct: 183 YLSAILSLE-PNQNYAGMLGLLVQFCTSHKEMDVVSQHKSALLDFYMKNILMSKVKPPKY 241
Query: 232 LSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILS 291
L +S PL ++S +F+ ++LP K L R+PE ++E+I LL SV LDLS+YA +I+
Sbjct: 242 LLDSCAPLLRYLSHSEFKDLILPTIQKSLLRSPENVIETISSLLASVTLDLSQYAMDIVK 301
Query: 292 VVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIG 351
+ ++ A+ + L+ + S+ A+E++ + A++GGSEG+L Q++
Sbjct: 302 GLAGHLKSNSPRLMDEAVLALRNLARQCSDSSAMESLTKHLFAILGGSEGKLTVVAQKMS 361
Query: 352 MVNALQELS-NATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADII 410
+++ + +S + G L+ + + + + E +E + +S +A W R +
Sbjct: 362 VLSGIGSVSHHVVSGPSSQVLNGIVAELFIPFLQQEVHEGTLVHAVSVLALWCNRFTMEV 421
Query: 411 QSDLLSFFASGLKEK---EALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKA 467
L +F K A+R +L+C+ + D +LQ LL LIQ V+ +++
Sbjct: 422 PKKLTEWFKKAFSLKTSTSAVRHAYLQCM-LASYRGDTLLQALDLLPLLIQTVEKAASQS 480
Query: 468 VQR---LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDC 524
Q +G+ A L++ K++ AD +AE ++ W L+ + + + ++ +D
Sbjct: 481 TQVPTITEGVAAALLLLKLSVADSQAEAKLS--SFWQLIVDEKKQVFTSEKFLVMASEDA 538
Query: 525 MACV-ELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVP- 582
+ V L L ++H HR L V+ + ++ +W +R+ A RK+++S+
Sbjct: 539 LCTVLHLTERLFLDHPHR-LTGNKVQQYHRALVAVLLSRTWHVRRQAQQTVRKLLSSLGG 597
Query: 583 -HLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA 641
L+ LL E LS + + +D + ++ ++P +Q + L VI+ V
Sbjct: 598 FKLAHGLLEELKTVLSSHKVLPLEALVTDAGEVTEAGKAYVPPRVLQ-EALCVISGVPGL 656
Query: 642 RG-----PSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCK 696
+G + ++ SHHPS+V + +W L L + + ++ + +
Sbjct: 657 KGDVTDTEQLAQEMLIISHHPSLVAV--QSGLWPAL---LARMKIDPEAFITRHLDQI-- 709
Query: 697 VLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQ 756
+ M+ Q+++N++ +L ++P + ++ +
Sbjct: 710 -----IPRMTTQSPLNQSSMNAMGSLSVLSPDRVLPQLISTITASVQNPALRLVTREEFA 764
Query: 757 VFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREV 816
+ TP G L Y I+ + +QD + K S ++
Sbjct: 765 IMQTPAGEL------YDKSIIQSA-------------QQDSIKKANMKRENKAYSFKEQI 805
Query: 817 SGAGKKDIGKSTKKADKGKTAKEEARELL---LNEEASIREKVQGVQRNLSLMLSALGEM 873
K+ K K + + +E+L L+ EA +R ++Q + L L L +
Sbjct: 806 IELELKEEIKKKKGIKEEVQLTSKQKEMLQAQLDREAQVRRRLQELDGELEAALGLLDII 865
Query: 874 AIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATA--- 930
NP +P LV PLL+SP+ + L+ C MP AL +
Sbjct: 866 LAKNPSGLTQYIPVLVDSFLPLLKSPLAAPRIKNPFLSLAACV-MPSRLKALGTLVSHVT 924
Query: 931 LRLI----VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFV 986
LRL+ V ++ +L +V A + + R+ G + PL +F+ V
Sbjct: 925 LRLLKPECVLDKSWCQEELSVAVKRAVMLLHTHTITSRVGKG---EPGAAPLSAPAFSLV 981
Query: 987 FPIIERILLS-PKRTGLHDD----VLQMLYKHMD----PLLP-----------LPRLRMI 1026
FP ++ +L P + ++ +LQ+L P P LPR+ M+
Sbjct: 982 FPFLKMVLTEMPHHSEEEEEWMAQILQILTVQAQLRASPNTPPGRVDENGPELLPRVAML 1041
Query: 1027 SVLYHVLGV-VPSYQAAIGSALNELCLG---------LQPNEVASALHGVYTKDVHVRMA 1076
+L V+G P Q L LC + EV L + + VR
Sbjct: 1042 RLLTWVIGTGSPRLQVLASDTLTTLCASSSGDDGCAFAEQEEVDVLLCALQSPCASVRET 1101
Query: 1077 CLNAV----KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY 1132
L + +PA T + + LW+ D E+ + + AE +W G D D
Sbjct: 1102 VLRGLMELHMVLPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDL 1160
Query: 1133 -SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA-- 1189
S L + + VR A AEAL+ A+ Y + L +Y + +DA
Sbjct: 1161 CSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLDALG 1220
Query: 1190 ---------GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAG 1240
W R G+ALAL+ + L + + + F + AL D + DVR ML+A
Sbjct: 1221 RVISESPPDQWEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAA 1280
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ ++ HG++NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV
Sbjct: 1281 LATLNTHGKENVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKP 1339
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
+V KL+ L+TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+
Sbjct: 1340 IVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAY 1399
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+
Sbjct: 1400 GLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVH 1459
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LP LL+ F D VREAA+ A+A+MS LSA GVKLVLPSLL LE+++WRTK SV+
Sbjct: 1460 VLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVE 1519
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P
Sbjct: 1520 LLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAP 1579
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+
Sbjct: 1580 VLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQII 1639
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+
Sbjct: 1640 GNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLP 1698
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLT 1718
WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+
Sbjct: 1699 WLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIM 1758
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP
Sbjct: 1759 MFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLP 1818
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
+E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG
Sbjct: 1819 QLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALG 1878
Query: 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS 1898
++RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ LAS+
Sbjct: 1879 VERRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTC 1938
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S +
Sbjct: 1939 ADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDA 1998
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
+L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S
Sbjct: 1999 VLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVS 2058
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA
Sbjct: 2059 EFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPA 2115
Query: 2079 LLSAMGDD--DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
++ A+ + D Q + V D+ G ++ LL+ + +R+++A ++
Sbjct: 2116 VMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIIL 2175
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
+ SK +++S LI L +DS + +W+AL+ + + Q + I+ +
Sbjct: 2176 NIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEEL 2235
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGE 2255
I ++ + + +PGFCLP K + +LP+ +G+++GS E +E+AA LG
Sbjct: 2236 HKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGL 2289
Query: 2256 LIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQ 2315
+I +TS +L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQ
Sbjct: 2290 VIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQ 2349
Query: 2316 TTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ-VSDAGIREAILTALK 2374
TTF K LQDS R VR AA ALGKL ++ +VDPL +LL+ ++ + D G+R+ +L AL+
Sbjct: 2350 TTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALR 2409
Query: 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE- 2433
V++ AG V + ++ + S+L ++ HD+D+ R+S+A LG + + + +L+ +LQ+
Sbjct: 2410 FVIQGAGAKVDAVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQC 2469
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
LL S W RHG L + + P + + + + SS ++ P+ +
Sbjct: 2470 LLADVSGIDWMVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGV 2529
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN------ 2547
+ +G L+ H I++G + L V L + SS++R L A K + AN
Sbjct: 2530 RGMGFLMRHHIETGGGQLPAKLSSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPP 2584
Query: 2548 --PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
P AI + AL + KD +T VR +++ V+ ++ +G
Sbjct: 2585 LDPQAIKPILK----ALLDNTKDKNTVVRAYSDQAIVNLLKMRQG 2625
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Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating GCN2 protein kinase (EIF2AK1-4) activity. Homo sapiens (taxid: 9606) |
| >sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/2475 (33%), Positives = 1304/2475 (52%), Gaps = 208/2475 (8%)
Query: 213 FLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIG 272
L+IY K V+ + ++ ++ + F LF ++ ED QSI+LP + +KR+ + + + +
Sbjct: 260 LLNIYNKTVIGSSQQKIEE-HKFFKRLFNQLTNEDLQSIILPPLSRHIKRDQDQVFKILI 318
Query: 273 ILLKSVNLDLS---------KYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPD 323
+L++++ D + +L V+ +E RK T + E+S +
Sbjct: 319 FILENLSSDFNVIDLSSLLKSMLLPMLLPVIQSTISIEENRKLLKKT-FTLIIERSKDTK 377
Query: 324 ALEAM----FYAIKAVIGGSEGRLAFPYQRIGMV---NALQELSNATE-----GKYLNSL 371
+ +M +V G +L ++ N ++ LS TE + L S+
Sbjct: 378 LISSMITDDLLKTLSVAGNPSQKLIIISIISSIISTKNFIERLSLTTEKLQLSKQILQSI 437
Query: 372 SLTICKFLLSCYKDEGNEEVKL--AILSAVASWAKRSADIIQSDLLSFFASGLKEKEALR 429
S+ + K L KD N+ KL ++ V +++ II + LK + +
Sbjct: 438 SIYLEKEL---NKDNRNKGFKLLGKVMKMVEELPEQTIKII--------TNSLKNDDDII 486
Query: 430 RGHLRCLRVICTNTDAVLQVSSLLGP--------LIQLVKTGFTKAVQ------------ 469
+G + +L +S LGP +IQ++ GFT+ +
Sbjct: 487 KGQV------------ILSLSKSLGPEANGTNKKVIQII-NGFTETINTILKNVKNAKTC 533
Query: 470 -------RLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVD 522
L + + + + DI + + K + +L + L I + S
Sbjct: 534 DPSTTTASLHYMLSLITTTGVPKNDIFTKYSTDKTTISNLYASTS-FLHTDGFIQRTSKK 592
Query: 523 DCMACVELLVVLLVEHSHRVLETFSVKL-----LLQLVLLFTCHPSWDIRKMAHDATRKI 577
D ++LL+ L + RV S+KL L VL H W + K + R I
Sbjct: 593 D--HAIDLLLTLFL----RVKSFPSIKLNDKSPLYSSVLNCLLHSQWSVSKHSAIKIRSI 646
Query: 578 IT-------SVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQV- 629
++ P LS LL+EFS L + +II T ++S V + +
Sbjct: 647 LSRNDSVDIDYPLLSNQLLIEFSTI--LFDDSLII-----TPQIINSNVESTTTTTTTIS 699
Query: 630 --KTLLVIASVALARGPSASARVIFC--SHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIE 685
K L+ L++ + + +HP I + W+R+ ++ +V
Sbjct: 700 NKKNYLIAFRSILSKNIKSELYPMLSLICYHPFI------NYNWKRVSSLIQN---DVNT 750
Query: 686 IVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCY 745
+S++ + K + N QQA +++ LM+ + + E+ +K +
Sbjct: 751 TLSSNAIEISKYIFEKGLNQKKNKSYQQAFQQAINGLMNY---NVPLLNEELVKLMVKAL 807
Query: 746 VHD---SLSENDIQVFYT-PEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHV 801
++ ++++ +++T P + +Q ++V ++N ++ K + EEQ
Sbjct: 808 SYEPVLAITQQQWSIYHTLPTELFVEKQ----EQLVESRNDRKVKP--KTAEEQ------ 855
Query: 802 GSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA-RELLLNEEASIREKVQGVQ 860
+ E + + + + KK G+ K+E R+ L +A IR+ VQ V
Sbjct: 856 ------RDEESRKRI---------EEKKKIQSGELEKQEKERQKQLAAQAVIRKDVQDVI 900
Query: 861 RNLSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAM 918
L L + MA +NP F + ++ + L++ I + KL C
Sbjct: 901 DRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVFEKLICCVP- 959
Query: 919 PLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPL 978
+ LD + A I P++ E + L ++I+ + S L
Sbjct: 960 --SRFKLDRSFARHYIYIINNIYYR---PTLSEI----QILGFIQKILTHIRESIAKEAL 1010
Query: 979 PVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPS 1038
+F + +PII+ L + + + ++++ KH PR MIS L V+
Sbjct: 1011 SGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISSLIIVVSTNSR 1070
Query: 1039 YQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEV 1098
+A + + +L G++ +++ + G+ +K V VR CL A++ IP++ + S +
Sbjct: 1071 LEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIYSPSFVWEDKY 1130
Query: 1099 STSLWIAVHDPEKSVAEA-AEDIW--DRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALA 1155
SLW A D + A AE IW D+ K LS S +NV + A
Sbjct: 1131 IGSLWFARFDNHDANTSALAEKIWLATNQPTQLPEDF---MKLLSDSTFNVNSETRKINA 1187
Query: 1156 TALDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD-VLRT 1210
A+ E + I + LF +Y ++ R +A AL + ++
Sbjct: 1188 LAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALSGLGNAIVEP 1247
Query: 1211 KDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDE 1270
+ L + T +I R L D +V ++ G+ II++ G L FE +L + +
Sbjct: 1248 EVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEAFLARPDNGT 1307
Query: 1271 EKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330
+ D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S C++ L+ S
Sbjct: 1308 GEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGISKCIAQLIPS 1367
Query: 1331 MQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
+ + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I TL+ + D
Sbjct: 1368 FKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSILDTLQSYIED 1427
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D V VR+A A+A+MS
Sbjct: 1428 KKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDATADTAKAIMS 1487
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509
QLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP IVPKLT VL
Sbjct: 1488 QLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTIVPKLTYVLN 1547
Query: 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569
DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ LL T +V+T+
Sbjct: 1548 DTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENLLSTNYVHTI 1607
Query: 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L+P +K VL+
Sbjct: 1608 DPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNILMPVMKTVLL 1666
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQGLSEVLA+L
Sbjct: 1667 DPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQGLSEVLASL 1726
Query: 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749
F ++ +++ + R VR+G L++F + P SLG F YL +VLP +L GLAD+
Sbjct: 1727 DISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLPQVLKGLADD 1786
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L GDLLFK+AGT
Sbjct: 1787 SDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFGDLLFKLAGT 1846
Query: 1810 SGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAA 1864
+ + + S DD+ + G I ++LG+++ +L++LYM+R D + SVRQ
Sbjct: 1847 TAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFDNNSSVRQKV 1906
Query: 1865 LHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI 1924
L +WK IV+NTPKTL+EI+P L+ +ISS+ S++ E+RQ++ + LG++V KL +R+LP I
Sbjct: 1907 LLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSKLSDRILPEI 1966
Query: 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRES 1984
+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALCD +++VRE+
Sbjct: 1967 LPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALCDPLIDVREA 2025
Query: 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHIL 2041
A AF L+ + G +A +EI+P L+ L++ D ALDGL+Q++ VR++ VLP ++
Sbjct: 2026 AAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVRSSIVLPVLI 2085
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAET 2100
PKL+ P+S N AL +LA AG GL HL TI+P+L+ + + + + KEAA +
Sbjct: 2086 PKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNAKEIKEAAVS 2145
Query: 2101 VTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP-NMISTLI 2159
+ IDE+G ++L+ L++ +IR + LIG FY + +V E P ++ +L+
Sbjct: 2146 ICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNT--MVTEYPEELLLSLL 2203
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
L +D D+ AA AL + S+ K+ +Y+ V + I ++ + IP
Sbjct: 2204 SLFNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEEVST----IP 2258
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
GFCLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+ ITGPLI +
Sbjct: 2259 GFCLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVMQITGPLILV 2318
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
IGD+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR++AA ALG
Sbjct: 2319 IGDKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVRTNAASALGL 2378
Query: 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399
L LS+ VD LV L++ + +D+ +E+ L AL+ + + K V A + + + D
Sbjct: 2379 LMTLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLDKAIATIVDF 2437
Query: 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWA--ARHGSVLVFATFL 2457
+Y D +R A +G S+C L +L Q + SPS + +R+G L
Sbjct: 2438 LYQPSDDLRSMVAQTIGASSKCF--TSLTELNQFIKTNLISPSQSVLSRYGKSLALGEIF 2495
Query: 2458 RHNPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515
+ + + S SP +I+ +++ +DEK P+RE+S +L+ + P T
Sbjct: 2496 KASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----ASPL--TYAK 2549
Query: 2516 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLKDGSTPVR 2574
D++ S+ + D SS V AL+ +K K+N ++ + P + + + P++
Sbjct: 2550 DLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLKERTNLPLK 2609
Query: 2575 LAAERCAVHAFQLTR 2589
LAAER VH+ Q+ +
Sbjct: 2610 LAAERTLVHSLQIFK 2624
|
Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating gcn2 kinase activity. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/1915 (33%), Positives = 1061/1915 (55%), Gaps = 124/1915 (6%)
Query: 711 EQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQG 770
++ AAI S+S ++ + P+++ F ++ S+S D++++ TPEG+L
Sbjct: 743 KETAAIASISMIVFVAPEESIPLFVNVFRNQLLHLNISSVSSTDLEIWKTPEGVLWDN-- 800
Query: 771 VYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKK 830
++ K++K+ + YE + V + SAK+ + K
Sbjct: 801 -----VLEKKSSKKLDKNTKDYETKRWEAEVRAKQSAKKPA------------------K 837
Query: 831 ADKGKTAKEEARELLLNEEASIREKVQ----GVQRNLSLMLSALGEMAIANPVFAHSQLP 886
K + A +A+ L+ EA IR +V ++R L ++ S LGE P
Sbjct: 838 LSKDQQALVDAQ---LDAEAKIRSRVNLIALSLERGLGIIRS-LGEAVQLAPALWVEDAI 893
Query: 887 SLVKFVDPLLQS-PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDL 945
++ F + L S P + ++AY+ + + + +++L I+ V+S
Sbjct: 894 DVLLFHNVLKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNSS- 952
Query: 946 IPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD 1005
++ E K+ I+ L + + F +FP++ + + + D+
Sbjct: 953 -ENIKELTKS---------ILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNSDEEDE 1002
Query: 1006 V-LQMLYKHMDPLLPLP-------RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN 1057
LQ+L + L R ++I L H+L + P+ ++L LC GL
Sbjct: 1003 AELQLLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHST 1062
Query: 1058 EVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ + + H +R A L A++ E +++ ++D ++
Sbjct: 1063 YTDEELNLLLSNLFHPESSIRSAVLQALQAFDL-------SRFEFIKEIFLELYDDNETN 1115
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTL 1172
A A I + G D T + L + + ++ ++L LDE+ + Q L
Sbjct: 1116 ASIAHQISTQNGLDATETSFFELQIFFTQDSDYLQQIIGKSLIDLLDEFEELGQFIPKEL 1175
Query: 1173 FSLY----------------IRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVI 1216
Y I+ +G D G + R+ +A++ + L + L
Sbjct: 1176 MRTYRENALPSAPEYDEYGIIKKETIGRD---LGRIARESVAVSFFHISKYLSSNLLLPF 1232
Query: 1217 MTFLISRALA-------DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ FL++ + A D + V +ML AG + I + G V L +FE LN +
Sbjct: 1233 LEFLLTASEAEAQIPVTDASQKVSSKMLEAGKLAIFQSGAHQVEALMELFEQKLNVDSLP 1292
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ D +RE V+ G +A+HL +DP++ V+D LL VL+TPSE+VQ AV+ CL PL++
Sbjct: 1293 TDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLSTPSESVQLAVAVCLPPLVK 1352
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
++ L ++LM S +++GAA+GLAG+VKG+GI + + + I +L E +++
Sbjct: 1353 KSLGKSKEYYELLSNKLMNSTSLADQKGAAYGLAGLVKGYGIKAFQDFNILDSLSELISN 1412
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
R +A R+ AL A E LG FEPY+ +LPLLL +F D VREA A + +MS
Sbjct: 1413 RQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVREATMDAVKQIMS 1472
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509
QLSA GVKL+LP+LL GL + WR+K++SV++LG M+Y AP+QLS LP I+PKL+EVLT
Sbjct: 1473 QLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLT 1532
Query: 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569
D+H +V++ +L + G VI NPEI +LVPTLL L+D +T +L+ LL+T+FV+ +
Sbjct: 1533 DSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYL 1592
Query: 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
D PSLAL++PI+ GLRER+A TK+++A+I G M SL TEP+++ Y+ L+P +++VL+
Sbjct: 1593 DPPSLALVIPILKYGLRERNAGTKRQSAKIFGLMASL-TEPENLAVYLESLMPRLREVLI 1651
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
DP+P+ R+ AA+A+GSLI +GE+ FP L+ L + L+S+ S V+R GAAQGLSE+LA L
Sbjct: 1652 DPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILAGL 1711
Query: 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749
G E +LP+I++N S +R+ +++L YLP + G +FQ YL + +P IL GLAD+
Sbjct: 1712 GLARLEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADD 1771
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
+E V+ A+L A ++V +YAT S+ LLLP +E G+F++ WRIR SSV+L+GDL+FK+AG
Sbjct: 1772 SELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFDNAWRIRLSSVQLVGDLVFKLAGI 1831
Query: 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869
+ KAL E ++EG ++ +A+++++G+++ + +L+ LY+VR D++ VR A+ +WK
Sbjct: 1832 NRKALQE-DEEEEGTHSDVSRKALLDIIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWK 1890
Query: 1870 TIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929
IV NTP+T++EI+P L + ++S+L SSS++RR + ++LG+L++K G VLP ++P+L
Sbjct: 1891 AIVVNTPRTVREILPTLTSIIVSNLNSSSNDRRTMCVKSLGDLLKKAGFDVLPQLLPVLK 1950
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
+GL+ ++ R GVCI L E++ SA QL + D+ + +R AL D LEVRE+A AF
Sbjct: 1951 QGLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAEAF 2010
Query: 1990 STLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049
+L G +A+D+++P LL LE + S+ AL L++I+S R++ + P ++P L+ P+
Sbjct: 2011 DSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPV 2070
Query: 2050 SAFNAHALGALAEVAGPGLNFHLGTILPAL----LSAMGDDDMDVQSLAKEAAETVTL-V 2104
SAFNA AL +LA+VAG LN L +IL AL L++ GDD + + A + V L V
Sbjct: 2071 SAFNARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNG----AIDKVNLSV 2126
Query: 2105 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164
D+EG++ L++ R +A + F++N KL + + I L D
Sbjct: 2127 KDQEGLQILMAHFYSFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLFED 2186
Query: 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224
V AA A + +V+++ K+ S + + ++ R + +P F +
Sbjct: 2187 KSQDVVVAAVAAQNTLVSALRKDQLDSLVSIAYHSL--------RDVGSQGVNLPAFEVA 2238
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ + +LPIFL GL+ G+ + REQ+ALG+ +++ T L+ FV ITGPLIRIIG+RF
Sbjct: 2239 QGVNSILPIFLYGLMHGTMDQREQSALGIADIVLKTEPSKLRPFVTQITGPLIRIIGERF 2298
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSAL 2343
P +VK AIL TL+II+ K L+PFLPQLQ TF KCL D S+ +RS AA ALG L L
Sbjct: 2299 PVEVKCAILYTLNIILSKISTFLRPFLPQLQRTFAKCLGDPSSEVIRSRAATALGTLITL 2358
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
TR+ P++ +L+S + DAG+R+A+L AL V+ +G++++ A + +L ++
Sbjct: 2359 QTRLAPIITELVSGARTPDAGVRKAMLNALFAVVSKSGQNMNEASAEAIEQLLDEISAES 2418
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQ-ELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+H+ V A + G + + D Q LL+ ++L+L + SVL+ ++
Sbjct: 2419 SEHM-VICAKLYGALFSHLPDAQAKQLLESKVLSLEIQSEF-----SVLILNAAVKFGSQ 2472
Query: 2463 AI---SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILA 2519
I +S + SI+ +SL+ E + E ALG+ LL I N +V+ L
Sbjct: 2473 KIIELKLSDIVCSIIS--TASLQKE-VTIAENGILALGKALLADIPQSFGNAKNLVEALK 2529
Query: 2520 SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVR 2574
+ A S + RR AL ++ V+K N S I H+++ PA+ C++ PV+
Sbjct: 2530 VNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPVK 2584
|
Acts as a translation activator that mediates translational control by regulating gcn2 kinase activity. Translational activator of gcn4. May be involved in sensing charged tRNA and stimulating the kinase activity of gcn2 in amino acid-starved cells. Required for the phosphorylation of eIF-2-alpha by the protein kinase gcn2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/1624 (35%), Positives = 917/1624 (56%), Gaps = 80/1624 (4%)
Query: 1015 DPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELC--LGLQPNE--VASALHGVYTKD 1070
DP +PR+ ++ VL +L +PS N LC + + PN+ + L + + +
Sbjct: 991 DP--SIPRISIVEVLLSLL-SLPSKAKIAKDCFNALCQSISVAPNQEDLDMILSNLLSPN 1047
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
VR L + + L ++ S ++I D + S E A+ IW+ +
Sbjct: 1048 QFVRSTILETLD-----NEFELEPFMKYSPEVFICRFDSDPSNREIADFIWEFNKFVVND 1102
Query: 1131 DY-SGLFKALSHSNYNVRLAAAEALA----TALDEYPDSIQGSLSTLFSLY--------- 1176
+ LF + + +RL AA A A + +S + L+ L + Y
Sbjct: 1103 ELLKSLFPLFNQDDSGLRLFAANAYAFGAVSLFTSEENSSKDYLNDLLNFYKEKAKPLEP 1162
Query: 1177 -IRDIGL---GGDNVDAGWLGRQGIALALHSAADVLRTKDLPV--IMTFLISRA-LADTN 1229
+ GL W GR +A+ L A +D V I+ FL+ L D
Sbjct: 1163 ILDQFGLVLVSASEQKDPWQGRSTVAITLKIMAKAFSAEDDTVVNIIKFLVDDGGLVDRE 1222
Query: 1230 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289
VR M AG+ +I HG N L PIFE L+ ++E V+I G LA+
Sbjct: 1223 PIVRQEMKEAGVELITLHGSQNSKDLIPIFEEALSSSTDSA-----LKENVIILYGTLAR 1277
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQ 1345
HL + D ++H ++++LL L+TPS +Q+AVS+C++PL+ Q + D L+ +LL+
Sbjct: 1278 HLQQSDARIHTIIERLLSTLDTPSADIQQAVSACIAPLVFQFKQKVGDYLGILMEKLLNP 1337
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405
+ S R+GAA+G+AG+VKG+GIS+L ++ I L E D+ KRRE F+
Sbjct: 1338 TVASSM---RKGAAWGIAGLVKGYGISALSEFDIIRNLIEAAEDKKEPKRRESVGFCFQY 1394
Query: 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465
L E LG+ FEPYVI++LP +L D V VR+A A +A+M+ + GVK ++P +
Sbjct: 1395 LSESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAIMAHTTGYGVKKLIPVAVS 1454
Query: 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525
L++ AWRTK+ SVQLLG MAY P QLS L IVP++ VL D+H +V+ A +L++
Sbjct: 1455 NLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGVLNDSHKEVRKAADESLKR 1514
Query: 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585
G VI+NPEI LVP LL + DP +T+ +LD L+QT FV+ +D PSLAL++ I+HRG+
Sbjct: 1515 FGEVIRNPEIQKLVPVLLQAIGDPTKYTEEALDSLIQTQFVHYIDGPSLALIIHIIHRGM 1574
Query: 1586 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+RSA K+KA +IVGNM LV + KD+IPY+ L+ EV+ +VDP+P R+ AARA+G+
Sbjct: 1575 HDRSANIKRKACKIVGNMAILV-DTKDLIPYLQQLIDEVEIAMVDPVPNTRATAARALGA 1633
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
L+ +GEE FPDL+ LLD L ++ + +R G+AQ L+EV++ LG + +LP I+
Sbjct: 1634 LVERLGEEQFPDLIPRLLDTLSDESKSGDRLGSAQALAEVISGLGLTKLDEMLPTILAGV 1693
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
++ RA +R+G++ L +LP G QF Y+ Q++ IL GLAD +E++RD AL AG ++V
Sbjct: 1694 TNFRAYIREGFMPLLLFLPVCFGSQFAPYINQIIQPILSGLADNDENIRDTALKAGKLIV 1753
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
++YAT ++ LLLP +E G+F++N RIR SSV+L G+LLF+V G S + E +D +
Sbjct: 1754 KNYATKAVDLLLPELERGMFDENDRIRLSSVQLTGELLFQVTGISSRN--EFSEEDGDHN 1811
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
E G+ +++VLG+D+R+ +LAAL++ R+D S VR + +WK +V NTP+ +KEI+P
Sbjct: 1812 GEFSGK-LVDVLGQDRRDRILAALFVCRNDTSGIVRATTVDIWKALVPNTPRAVKEILPT 1870
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS-RRQGVC 1944
L +++ LASSS+ R +A + LG+LVR++G L ++P L L + S S RQGVC
Sbjct: 1871 LTGMIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPSLEESLIETSNSDSRQGVC 1930
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
I L E++ SA + F ++ IRTAL D VRE+A L+F G A+DE+
Sbjct: 1931 IALYELIESASTETISQFQSTIVNIIRTALIDESATVREAAALSFDVFQDVVGKTAVDEV 1990
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
+P LLH LE SD AL GL++I+S ++ + P ++P L+ P+ AF A ALG+LAEVA
Sbjct: 1991 LPYLLHMLESSDNSDFALLGLQEIMSKKSDVIFPILIPTLLAPPIDAFRASALGSLAEVA 2050
Query: 2065 GPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTL-VIDEEGVESLVSELLKGV 2121
G L L I+ AL+ A+ +D + + A + V L V D+EG+ L+ +++ +
Sbjct: 2051 GSALYKRLSIIINALVDAIIGTSEDESTKGALELALDRVFLSVNDDEGLHPLLQQIMSLL 2110
Query: 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
+ R + + F+ + L PN +S I+ L D D V + ALS ++
Sbjct: 2111 KSDNIEKRIAVLERLPNFFDKTVLDFDVYIPNFVSHAILSLDDEDQRVVNGNFNALSTLL 2170
Query: 2182 ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 2241
V K P+ K+++ A + R+ + + F LP+ +LPIFL GL+ G
Sbjct: 2171 KKVDK---PTLEKLVKPAKQSLALTGRQGQD-----VAAFKLPRGPNCVLPIFLHGLMYG 2222
Query: 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301
S + RE++AL + +++ T +LK FV ITGPLIR++G+RF +K+AIL L+++
Sbjct: 2223 SNDEREESALAIADVVSKTPAANLKPFVSVITGPLIRVVGERFSSDIKAAILFALNVLFI 2282
Query: 2302 KGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLS-SLQ 2359
K + L+PF+PQLQ TF+K L D+T T+R AA ALG L RVDPLV +L++ + Q
Sbjct: 2283 KIPMFLRPFIPQLQRTFVKSLSDATNETLRLRAAKALGALIEHQPRVDPLVIELVTGAKQ 2342
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
+D G++ A+L AL V+ AG ++ K + +++++ + +D + V+ A ++G +S
Sbjct: 2343 ATDEGVKTAMLKALLEVIMKAGSKLNENSKTNIVNLVEEEMLGSNDKLAVAYAKLIGSLS 2402
Query: 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+ + + + +LQ+ + L + ++L +FL+ P+ I + L + + +
Sbjct: 2403 EILSNDEAHKILQDKV-LNADLDGETGKFAILTLNSFLKDAPTHIFNTGLIDEFVSYILN 2461
Query: 2480 SLKDEKFPLREASTKALGRLLLHQ---------------IQSGPANTTVVVDILASVVSA 2524
+++ E T A G+LLL + + G N ++++ L+ V
Sbjct: 2462 AIRSPDVYFGENGTIAAGKLLLLEGEKRSPFVKKDAAEPFKIGDENINLLINELSKAVLQ 2521
Query: 2525 LHDDSSEVRRRALSALKSVAKAN-PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVH 2583
+S++VRR AL ++++A+ I + + GP++ CL+D P++LAAE+ +
Sbjct: 2522 PASNSTDVRRLALVVIRTLARFKFDECIKQYFDVVGPSVFSCLRDPVIPIKLAAEKAYLA 2581
Query: 2584 AFQL 2587
F+L
Sbjct: 2582 LFKL 2585
|
Acts as a translation activator that mediates translational control by regulating GCN2 kinase activity. Translational activator of GCN4. May be involved in sensing charged tRNA and stimulating the kinase activity of GCN2 in amino acid-starved cells. Required in vivo for the phosphorylation of eIF-2-alpha on 'Ser-52' by the protein kinase GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 158/276 (57%), Gaps = 10/276 (3%)
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAV 1436
+ + + + L D+N A RE L E + + EPY++++LP ++ +D+ AV
Sbjct: 53 VFSAISKQLNDKN-ATARERVLKGLEAVANHGSVAADVEPYLVELLPAVIAKVADKQNAV 111
Query: 1437 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ 1495
R+AA A++A++ + VK ++PS+L+ + W K +S+QLL + AP QLS
Sbjct: 112 RDAAIAASKAIVRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSY 171
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
LP+I+P ++E + DT +V+ + + +V ++I N +I +P L+ + P +
Sbjct: 172 SLPQIIPVVSESMWDTKAEVKKQSKETMTKVCTLIANADIDRFIPELINCIAHP-EEVPE 230
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
++ L TTFV V AP+L+++VP++ RGL ERS K+K A I+ NM LV +P+ + P
Sbjct: 231 TIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSKLVEDPQVVAP 290
Query: 1616 YIGLLLP---EVKKVLVDPIPEVRSVAARAIGSLIR 1648
++ LLP +K + D PE RSV RAI +L R
Sbjct: 291 FLPKLLPGLYHIKDTIGD--PECRSVVQRAITTLER 324
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14134|ELF1_SCHPO mRNA export factor elf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 161/278 (57%), Gaps = 5/278 (1%)
Query: 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ 1432
+LK G L ++ S RE A++ F + + LG E + LP +L +FSD+
Sbjct: 50 TLKTTGFLDGLERAARNKKSGFHREAAMIGFATVIKNLGTPSEVVFLPYLPTILDSFSDR 109
Query: 1433 VVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKA--WRTKQSSVQLLGAMAYCA 1489
VR+AA+ AA+A++ L A V+ ++PSL+ L+D + W +K +++QLLG++A +
Sbjct: 110 GEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDDSSIKWPSKVAALQLLGSLASSS 169
Query: 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549
P+ ++ + ++P + E + DT P++ A T + + SV++N +I +P L+ + P
Sbjct: 170 PKAVADYMAALIPCIKERMHDTKPEISRAAITCMLNLCSVVENNDIIPHIPKLVDCMAHP 229
Query: 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ + + L TTFV TV++ +LA+LVPI+ R L +RS + I N+C LV +
Sbjct: 230 -ETLEACIKDLSATTFVATVESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288
Query: 1610 PKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSL 1646
P + ++ L+P+V+++ +PEVR++A+ A+ +L
Sbjct: 289 PAEASDFLPELIPDVERIAQTAAMPEVRALASHALTTL 326
|
Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P29551|EF3_PNECA Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAA 1440
TL E + +++ R E AL A + + EPY++++LP +L ++V AVR A
Sbjct: 53 TLEEQIESKDTLAR-EQALKALLLTLDATNKRVEPYLVRLLPRVLKQVGLEKVAAVRTQA 111
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499
A ++ ++ VK +L + ++ W K + +LL + AP Q+S LP+
Sbjct: 112 STVAEDIIKTMNPYAVKTILSHVTNSIKTSGKWMEKMCAFRLLDMLVEKAPCQMSYRLPE 171
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
++P L+E + DT +++ + + V ++I NP+I +P L+ + P + ++
Sbjct: 172 LIPILSESMWDTRTDIKNQARKTMTSVCTLISNPDIDKFIPVLIDCIAQP-EKVPETIHT 230
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L TTFV V A +L+++VP+++RGL ER K+K+A I+ NMC LV +P + P++
Sbjct: 231 LGATTFVQEVHASTLSIMVPLLYRGLNERETTIKRKSAVIIDNMCKLVEDPYIIAPFLPK 290
Query: 1620 LLP---EVKKVLVDPIPEVRSVAARAIGSLIR--GMGEENFPDLVS 1660
L+P +K+ + D PE RSV R++ +LIR + E P++++
Sbjct: 291 LIPTLEHIKETIGD--PECRSVVNRSLATLIRVGNVKEGKIPEVLN 334
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Pneumocystis carinii (taxid: 4754) |
| >sp|P25997|EF3_CANAL Elongation factor 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 17/326 (5%)
Query: 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRRE 1397
++S LL +L +D E A + F SS+ ++ + E L + +K +
Sbjct: 13 VLSELLSKLQVADNKDE-------AASNISTFLNSSIVEHDVPVEFFEDLKKQIQSKDAK 65
Query: 1398 GALLAFECL-----CEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452
+L A + L EPYV+ ++ + V D+ V+ AA A A+ S ++
Sbjct: 66 VSLAALDAYKHIASTNGLSPSVEPYVVDLVSEVAVKAGDKNKDVQTAASDALLAIASAIT 125
Query: 1453 AQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
VK +LP L+ L + W K + ++ + + A Q++ +P+++P L+E + DT
Sbjct: 126 PTAVKAILPKLIDNLTNTNKWTEKVAILRAVSQLVDTAKAQIALRMPELIPVLSESMWDT 185
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
+V+ A + + I N +I +P L+ + P + ++ +L TTFV+ V
Sbjct: 186 KKEVKEAATATMTKSTETIDNKDIEKFIPQLISCIAKPTE-VPETVHLLGATTFVSEVTM 244
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD- 1630
+L+++ P++ RGL ER K+KAA IV NMC LV +P+ + P++ LLP +K +
Sbjct: 245 ATLSIMAPLLSRGLAERDTAIKRKAAVIVDNMCKLVEDPQIVAPFMDKLLPGLKNNFANM 304
Query: 1631 PIPEVRSVAARAIGSLIR--GMGEEN 1654
PE R V RA+ +L R +GE +
Sbjct: 305 ADPEAREVTQRALNTLRRVGAVGEND 330
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|P53978|EF3B_YEAST Elongation factor 3B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 1473
EPY++ +P + + V+ AA A +A+ S ++ VK +LP L+ LE W+
Sbjct: 85 EPYIVATVPSVCSKAGSKDNDVQLAATKALKAIASAVNPVAVKALLPHLIHSLETSNKWK 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + ++++ + A +Q++ +P+++P L+E + DT V+ A T + + + N
Sbjct: 145 EKVAVLEVISVLVDAAKEQIALRMPELIPVLSESMWDTKKGVKEAATTTITKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P L+ + +PN+ ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPKLIECIANPNE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLAERETSIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+KAA I+ NMC LV +P+ + P++G LLP +K + D PE R V +A+ +L R
Sbjct: 264 RKAAVIIDNMCKLVEDPQVVAPFLGKLLPGLKNNFATIAD--PEAREVTLKALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Weakly expressed functional homolog of translation elongation factor 3A (YEF3), not required for survival. Can complement loss of YEF3 when expressed from the YEF3 or ADH1 promoters. Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWR 1473
EPY++Q++P + ++ ++ A ++++ ++ +K +LP L + E W+
Sbjct: 85 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 145 EKIAILAAISAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 264 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2612 | ||||||
| 296085156 | 2636 | unnamed protein product [Vitis vinifera] | 0.989 | 0.980 | 0.833 | 0.0 | |
| 359476554 | 2613 | PREDICTED: translational activator GCN1 | 0.983 | 0.983 | 0.832 | 0.0 | |
| 359476556 | 2461 | PREDICTED: translational activator GCN1 | 0.926 | 0.983 | 0.821 | 0.0 | |
| 356506010 | 2616 | PREDICTED: translational activator GCN1 | 0.985 | 0.983 | 0.782 | 0.0 | |
| 255562017 | 2459 | Translational activator GCN1, putative [ | 0.926 | 0.983 | 0.804 | 0.0 | |
| 449477742 | 2611 | PREDICTED: LOW QUALITY PROTEIN: translat | 0.983 | 0.984 | 0.775 | 0.0 | |
| 449470206 | 2611 | PREDICTED: translational activator GCN1- | 0.983 | 0.984 | 0.776 | 0.0 | |
| 240254318 | 2610 | protein ILITYHIA [Arabidopsis thaliana] | 0.975 | 0.976 | 0.750 | 0.0 | |
| 357512395 | 2751 | Translational activator GCN1 [Medicago t | 0.990 | 0.940 | 0.738 | 0.0 | |
| 334183637 | 2696 | protein ILITYHIA [Arabidopsis thaliana] | 0.960 | 0.931 | 0.736 | 0.0 |
| >gi|296085156|emb|CBI28651.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4388 bits (11382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2162/2593 (83%), Positives = 2370/2593 (91%), Gaps = 9/2593 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSN--------HSAKRESANREVSGAGKKDIGKSTKKADKGKTAK 838
GRFRMY++QD D V SN HS ++E+A+REV+G GKKDIGKSTKKADKGKTAK
Sbjct: 785 GRFRMYDDQDDGDDVNSNLSVKRETNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAK 844
Query: 839 EEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQS 898
EEARELLL EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+S
Sbjct: 845 EEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRS 904
Query: 899 PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KE 957
P+V +VAYE +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N +
Sbjct: 905 PVVSEVAYETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERP 964
Query: 958 SLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPL 1017
SL LFERI++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+
Sbjct: 965 SLGLFERIISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPI 1024
Query: 1018 LPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMAC 1077
LPLPRLRM+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMAC
Sbjct: 1025 LPLPRLRMLSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMAC 1084
Query: 1078 LNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFK 1137
LNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFK
Sbjct: 1085 LNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFK 1144
Query: 1138 ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197
ALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGI
Sbjct: 1145 ALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGI 1204
Query: 1198 ALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFP 1257
ALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFP
Sbjct: 1205 ALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFP 1264
Query: 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQ 1317
IFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQ
Sbjct: 1265 IFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQ 1324
Query: 1318 RAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 1377
RAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+
Sbjct: 1325 RAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKF 1384
Query: 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437
GIA LREGLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR
Sbjct: 1385 GIATVLREGLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVR 1444
Query: 1438 EAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497
+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL
Sbjct: 1445 DGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1504
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
PKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSL
Sbjct: 1505 PKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSL 1564
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
DILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI
Sbjct: 1565 DILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1624
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677
GLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSG
Sbjct: 1625 GLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSG 1684
Query: 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737
AAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQ
Sbjct: 1685 AAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQ 1744
Query: 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1797
VLPAILDGLADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE
Sbjct: 1745 VLPAILDGLADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1804
Query: 1798 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857
LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS
Sbjct: 1805 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVS 1864
Query: 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917
+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLG
Sbjct: 1865 ISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLG 1924
Query: 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
ERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS
Sbjct: 1925 ERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1984
Query: 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037
EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVL
Sbjct: 1985 TPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVL 2044
Query: 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
PHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+A
Sbjct: 2045 PHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKA 2104
Query: 2098 AETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST 2157
AETV LVIDEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+T
Sbjct: 2105 AETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITT 2164
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
LIVLLSDSDS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+L
Sbjct: 2165 LIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVL 2224
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277
IPGFCLPKALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSEQ+LKEFVIPITGPLI
Sbjct: 2225 IPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSEQALKEFVIPITGPLI 2284
Query: 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD+TRTVRSSAALAL
Sbjct: 2285 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALAL 2344
Query: 2338 GKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 2397
GKLSALSTRVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGKSVS AV+ RVY +LK
Sbjct: 2345 GKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGKSVSVAVRTRVYVLLK 2404
Query: 2398 DLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFL 2457
D V+HDDD VR SAASILGI+SQ MEDGQL+DLLQEL +L SS SW+ARHGS+L ++ L
Sbjct: 2405 DFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLSWSARHGSILTISSML 2464
Query: 2458 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
RH+PS+I SP+F S++ LK +LKDEKFP+RE STKALGRLLLH++QS P+NT +D+
Sbjct: 2465 RHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLHRVQSDPSNTAAHLDV 2524
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPALAECLKDG+TPVRLAA
Sbjct: 2525 LSPMVSALQDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAA 2584
Query: 2578 ERCAVHAFQLTRG 2590
ERCA+HAFQLT+G
Sbjct: 2585 ERCALHAFQLTKG 2597
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476554|ref|XP_002267871.2| PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4371 bits (11337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2151/2585 (83%), Positives = 2358/2585 (91%), Gaps = 16/2585 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
+NHS ++E+A+REV+G GKKDIGKSTKKADKGKTAKEEARELLL
Sbjct: 785 E---------------TNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAKEEARELLL 829
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+SP+V +VAY
Sbjct: 830 REEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRSPVVSEVAY 889
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLFERI 965
E +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N + SL LFERI
Sbjct: 890 ETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERPSLGLFERI 949
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+LPLPRLRM
Sbjct: 950 ISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPILPLPRLRM 1009
Query: 1026 ISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIP 1085
+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMACLNAVKCIP
Sbjct: 1010 LSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMACLNAVKCIP 1069
Query: 1086 AVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYN 1145
AVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFKALSH NYN
Sbjct: 1070 AVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFKALSHINYN 1129
Query: 1146 VRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205
VRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGIALALHSAA
Sbjct: 1130 VRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGIALALHSAA 1189
Query: 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK 1265
DVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFPIFENYLNK
Sbjct: 1190 DVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFPIFENYLNK 1249
Query: 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 1325
K SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLS
Sbjct: 1250 KTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLS 1309
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
PLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+GIA LRE
Sbjct: 1310 PLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKFGIATVLRE 1369
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
GLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR+ AECAAR
Sbjct: 1370 GLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVRDGAECAAR 1429
Query: 1446 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT
Sbjct: 1430 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1489
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
EVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQTTF
Sbjct: 1490 EVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQTTF 1549
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
VN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK
Sbjct: 1550 VNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1609
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
KVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSGAAQGLSEV
Sbjct: 1610 KVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSGAAQGLSEV 1669
Query: 1686 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQVLPAILDG
Sbjct: 1670 LAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQVLPAILDG 1729
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK
Sbjct: 1730 LADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1789
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
VAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS+SVRQAAL
Sbjct: 1790 VAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVSISVRQAAL 1849
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSII 1925
HVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLGERVLP II
Sbjct: 1850 HVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLGERVLPLII 1909
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS EVRESA
Sbjct: 1910 PILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSTPEVRESA 1969
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
GLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV
Sbjct: 1970 GLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2029
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105
HLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+AAETV LVI
Sbjct: 2030 HLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKAAETVVLVI 2089
Query: 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165
DEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDS
Sbjct: 2090 DEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITTLIVLLSDS 2149
Query: 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 2225
DS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+LIPGFCLPK
Sbjct: 2150 DSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVLIPGFCLPK 2209
Query: 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285
ALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFP
Sbjct: 2210 ALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFP 2269
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345
WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSALST
Sbjct: 2270 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSALST 2329
Query: 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDD 2405
RVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGKSVS AV+ RVY +LKD V+HDDD
Sbjct: 2330 RVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGKSVSVAVRTRVYVLLKDFVHHDDD 2389
Query: 2406 HVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAIS 2465
VR SAASILGI+SQ MEDGQL+DLLQEL +L SS SW+ARHGS+L ++ LRH+PS+I
Sbjct: 2390 QVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLSWSARHGSILTISSMLRHSPSSIC 2449
Query: 2466 MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 2525
SP+F S++ LK +LKDEKFP+RE STKALGRLLLH++QS P+NT +D+L+ +VSAL
Sbjct: 2450 TSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLHRVQSDPSNTAAHLDVLSPMVSAL 2509
Query: 2526 HDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAF 2585
DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPALAECLKDG+TPVRLAAERCA+HAF
Sbjct: 2510 QDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAAERCALHAF 2569
Query: 2586 QLTRG 2590
QLT+G
Sbjct: 2570 QLTKG 2574
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476556|ref|XP_003631859.1| PREDICTED: translational activator GCN1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4142 bits (10743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2051/2497 (82%), Positives = 2239/2497 (89%), Gaps = 76/2497 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+VSKNA CRVA QAS+LHIVMQ SFR RR
Sbjct: 1 MEKQSKFQSNIGCYRLLKWSCLLLSKSRFASVSKNAFCRVATVQASVLHIVMQGSFRVRR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+TFF LFSQS DIYK Y +ELKDARI YK SPELI LLLEF S+ P LFE+C+PIFL
Sbjct: 61 ACKRTFFCLFSQSLDIYKIYIEELKDARISYKDSPELIWLLLEFSSRKPLLFEQCKPIFL 120
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
DIYVKAVLNA+E+P KGLSE+F PLFTHM EDF+SIV+P++IKMLKRNPEI+LES+G+L
Sbjct: 121 DIYVKAVLNAREEPAKGLSEAFHPLFTHMVHEDFKSIVVPSAIKMLKRNPEIVLESVGVL 180
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LKSVNLDLSKYA EILSVVL+Q RHADEGR+ GAL+I+ CLS+KSSNPDA+EAMF +IKA
Sbjct: 181 LKSVNLDLSKYAIEILSVVLAQARHADEGRRHGALSIVCCLSQKSSNPDAIEAMFNSIKA 240
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRLAFPYQR+GM+NALQELSNA EGKYLNSLS TIC FLLSCYKD+GNEEVKLA
Sbjct: 241 VIGGSEGRLAFPYQRVGMINALQELSNAPEGKYLNSLSPTICGFLLSCYKDDGNEEVKLA 300
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
IL A+ASW RSAD +Q D++SF SGLKEKE LRRGHLRCLR I NTDA++ VSSLLG
Sbjct: 301 ILPALASWVARSADALQRDVVSFLVSGLKEKEGLRRGHLRCLRFIFKNTDAIILVSSLLG 360
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PL+QLVKTGFTKA QRLDGIYA L+V KIAA DIKAEETV KEKLWSL+SQNEPSLVP +
Sbjct: 361 PLVQLVKTGFTKAAQRLDGIYALLLVAKIAAVDIKAEETVAKEKLWSLISQNEPSLVPIS 420
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +DCMACV+LL VL+VEH HRVLETFS +L+QL+L CHPSWDIR+ A+D T
Sbjct: 421 MASKLSTEDCMACVDLLEVLIVEHLHRVLETFSKNVLVQLILFLVCHPSWDIRRAAYDNT 480
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
+KII++ P L+EALL EF+NFLS+VGEKI + KTSDT++ +D+QVPFLPSVEV VK L+V
Sbjct: 481 KKIISAAPKLAEALLSEFTNFLSVVGEKIQLLKTSDTENSLDAQVPFLPSVEVLVKALIV 540
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S ALA PSA ++IFCSHHP IVGTGKR+AVW
Sbjct: 541 ISSEALAAVPSAIMQIIFCSHHPCIVGTGKRNAVW------------------------- 575
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
+ LLG LMS N LEQ+AAINSLSTLMS+ PKDTY+ FEKH + PD HD++SEND
Sbjct: 576 -RGLLGPTALMSPNHLEQEAAINSLSTLMSVIPKDTYIEFEKHFSNFPDRQSHDTVSEND 634
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
IQ+F+TPEGMLSSEQGVY+AE VA KN +Q+KGRFR + +NHS ++E+A+R
Sbjct: 635 IQIFHTPEGMLSSEQGVYVAESVATKNMRQAKGRFR----------IETNHSGRKETASR 684
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
EV+G GKKDIGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMA
Sbjct: 685 EVTGVGKKDIGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMA 744
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
IANPVFAHS+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLI
Sbjct: 745 IANPVFAHSELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLI 804
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VTEEVHV +LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFP
Sbjct: 805 VTEEVHVLLELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFP----- 859
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
VLYH LGVVP+YQA+IG ALNELCLG
Sbjct: 860 ----------------------------------VLYHALGVVPTYQASIGPALNELCLG 885
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
LQ +EVA AL+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSV
Sbjct: 886 LQSDEVAPALYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSV 945
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AE AEDIWDR GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLF
Sbjct: 946 AELAEDIWDRCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLF 1005
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD+G G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1006 SLYIRDVGFGEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1065
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGI+IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1066 GRMINAGILIIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAK 1125
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYG
Sbjct: 1126 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYG 1185
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRL
Sbjct: 1186 ERRGAAFGLAGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRL 1245
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1246 FEPYVIQMLPLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1305
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNP
Sbjct: 1306 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNP 1365
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI++LVPTLLMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1366 EISALVPTLLMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETK 1425
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEE
Sbjct: 1426 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEE 1485
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLVSWLLD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVR
Sbjct: 1486 NFPDLVSWLLDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVR 1545
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFKYLPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSL
Sbjct: 1546 DGYLTLFKYLPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSL 1605
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI
Sbjct: 1606 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1665
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IE LGRDKRNEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+S
Sbjct: 1666 IEGLGRDKRNEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITS 1725
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMAS
Sbjct: 1726 LASSSSERRQVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMAS 1785
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLLSFMDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LE
Sbjct: 1786 AGKSQLLSFMDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLE 1845
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG
Sbjct: 1846 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLG 1905
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
+LPALLSAM DDD DVQ LAK+AAETV LVIDEEGVE L+SELLKGVGDNQASIRRSS+
Sbjct: 1906 IVLPALLSAMSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSS 1965
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
+LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDSDS TVA AWEALSRV SVPKEV PSYI
Sbjct: 1966 FLIGYFFKNSKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYI 2025
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGL 2253
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPLLP+FLQGLISGSAELREQAA GL
Sbjct: 2026 KIVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGL 2085
Query: 2254 GELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313
GELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ
Sbjct: 2086 GELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2145
Query: 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
LQTTFIKCLQD+TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD G+REAILTAL
Sbjct: 2146 LQTTFIKCLQDNTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTAL 2205
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433
KGVL+HAGKSVS AV+ RVY +LKD V+HDDD VR SAASILGI+SQ MEDGQL+DLLQE
Sbjct: 2206 KGVLQHAGKSVSVAVRTRVYVLLKDFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQE 2265
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
L +L SS SW+ARHGS+L ++ LRH+PS+I SP+F S++ LK +LKDEKFP+RE ST
Sbjct: 2266 LSSLDSSLSWSARHGSILTISSMLRHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETST 2325
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
KALGRLLLH++QS P+NT +D+L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M
Sbjct: 2326 KALGRLLLHRVQSDPSNTAAHLDVLSPMVSALQDDSSEVRRRALSALKAVAKANPSALMT 2385
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
H+ +FGPALAECLKDG+TPVRLAAERCA+HAFQLT+G
Sbjct: 2386 HITIFGPALAECLKDGNTPVRLAAERCALHAFQLTKG 2422
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506010|ref|XP_003521781.1| PREDICTED: translational activator GCN1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 4049 bits (10502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2026/2589 (78%), Positives = 2297/2589 (88%), Gaps = 16/2589 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT--EMSPEIASFLVDIIFKTFSVY 61
A+S +L+S++ VSTSST R RIFR ++ + + ++ EMS E+AS L DIIF+T ++Y
Sbjct: 3 AESLQSLVSLSELVSTSSTNHRVRIFRREIPAFLNSSTSEMSTELASLLTDIIFRTVAIY 62
Query: 62 DDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKS 121
DD SRKAVDDVI K LG FMKTFA ALVQ MEKQSKFQSHVG YRLL WSCLLLSKS
Sbjct: 63 DDLRSRKAVDDVIVKALGGTVFMKTFAGALVQNMEKQSKFQSHVGGYRLLSWSCLLLSKS 122
Query: 122 QFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDA 181
+FA VSKNALCRVAAAQASLL +V++RSFRERRAC++ FFHLFSQ PDIYK Y +EL++
Sbjct: 123 KFAAVSKNALCRVAAAQASLLSLVLKRSFRERRACRKKFFHLFSQLPDIYKVYMEELRNG 182
Query: 182 RIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFT 241
RIP+K SPEL+ LLLEF S+SPSLF + + FLDIYV A+L+AKEKP K L+E+F PL+
Sbjct: 183 RIPFKDSPELLMLLLEFSSRSPSLFGEFKVTFLDIYVNAILSAKEKPGKSLTEAFHPLYL 242
Query: 242 HMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHAD 301
MS EDFQSIV+P+S+KMLKRNPEI+LES+GILLKSVNLDLSKYA EILSVVL+Q RHAD
Sbjct: 243 QMSHEDFQSIVIPSSVKMLKRNPEIVLESVGILLKSVNLDLSKYAAEILSVVLAQARHAD 302
Query: 302 EGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSN 361
EGR+ GAL I+ LS+KSSNPDAL+ MF AIKAVI GSEGRLAFPYQR+GMVNA+QELS
Sbjct: 303 EGRRDGALAIVQSLSQKSSNPDALDTMFNAIKAVIKGSEGRLAFPYQRVGMVNAIQELSY 362
Query: 362 ATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASG 421
A +GKYL SLS TIC FLLS YKD+GNEEVK+ ILSA+ASWA RS DIIQ L+SF ASG
Sbjct: 363 APDGKYLISLSRTICDFLLSYYKDDGNEEVKIVILSAIASWAVRSTDIIQESLVSFLASG 422
Query: 422 LKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVG 481
LKEKE LR+G LR L IC N DAVL++ L+G L+QLVKTGFTKAVQRLDGIYA L+V
Sbjct: 423 LKEKETLRKGFLRSLHAICKNEDAVLKMLPLIGTLMQLVKTGFTKAVQRLDGIYALLLVA 482
Query: 482 KIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHR 541
KIAA DIKAEET+ KEK+W+L+SQNEPS+VP +M SKLS++D M CV+LL VLLVEH
Sbjct: 483 KIAAVDIKAEETLVKEKIWALISQNEPSVVPISMASKLSIEDNMTCVDLLEVLLVEHLQC 542
Query: 542 VLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGE 601
L FSV+L+LQL++ F CHP WDIR+MA+D RKII S P LS+ LLLEFS +L+L+GE
Sbjct: 543 TLSNFSVRLMLQLMIFFMCHPRWDIRRMAYDVARKIIPSAPQLSKDLLLEFSKYLTLIGE 602
Query: 602 KIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVG 661
K + KTSD+D +D QVPF+PSVEV VK LL+++ AL P + R+I CSHHP +VG
Sbjct: 603 KHLALKTSDSDISLDPQVPFIPSVEVLVKALLIMSPAALKHAPESFFRIILCSHHPCVVG 662
Query: 662 TGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLST 721
K DAVW+RL KCL+ GF VI+++SA+VGN +VLLG +GL SAN LEQQAAI SL
Sbjct: 663 GAKIDAVWKRLSKCLQTQGFVVIDVISANVGNFLQVLLGPMGLKSANPLEQQAAILSLCN 722
Query: 722 LMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
LMSI P DTY+ FEK+L +LP+ + HD+L ENDIQ+F TPEGMLS+EQGVY+AE V AKN
Sbjct: 723 LMSIIPGDTYIEFEKNLLNLPERFAHDTLLENDIQIFLTPEGMLSTEQGVYVAESVTAKN 782
Query: 782 TKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA 841
TKQ DH SNHS +R+ +RE +GAGKKD GK+ KKADKGKTAKEEA
Sbjct: 783 TKQ--------------DHTRSNHSVRRDQPSREAAGAGKKDTGKAAKKADKGKTAKEEA 828
Query: 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIV 901
RELLL EEAS+R++V+ +Q+NLSLML LG+MAIAN VFAHS+LPS+VKFV+PL++SPIV
Sbjct: 829 RELLLKEEASVRDRVREIQKNLSLMLRTLGDMAIANSVFAHSRLPSMVKFVEPLMRSPIV 888
Query: 902 GDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCL 961
D A+E +VKL+RCTA PLC+WALDI+TALRLIVT+EVH+ DL+PSV E N+ L
Sbjct: 889 SDEAFETMVKLARCTAPPLCDWALDISTALRLIVTDEVHLLLDLVPSVTEEEFNERPHGL 948
Query: 962 FERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLP 1021
FERI++GL++SCKSG LPVDSF+F+FPIIERILL K+T HDDVL++ Y H+DP LPLP
Sbjct: 949 FERILDGLSISCKSGALPVDSFSFIFPIIERILLCSKKTKFHDDVLRIFYLHLDPHLPLP 1008
Query: 1022 RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAV 1081
R+RM+SVLYHVLGVVP+YQA+IG ALNEL LGLQP EVASAL+GVY KDVHVRMACLNAV
Sbjct: 1009 RIRMLSVLYHVLGVVPAYQASIGPALNELSLGLQPAEVASALYGVYAKDVHVRMACLNAV 1068
Query: 1082 KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSH 1141
KCIPAV+ RSLPEN+EV+TS+WIA+HDPEKSVA+ AEDIWD YG+DFGTD+SGL+KALSH
Sbjct: 1069 KCIPAVANRSLPENVEVATSIWIALHDPEKSVAQVAEDIWDHYGFDFGTDFSGLYKALSH 1128
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
NYNVR+AAAEALA ALDE+PDSIQ SLSTLFSLYI D+G+G DNVDAGWLGRQGIALAL
Sbjct: 1129 INYNVRVAAAEALAAALDEHPDSIQESLSTLFSLYILDMGVGDDNVDAGWLGRQGIALAL 1188
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
H+AAD+LRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDK+G+DNVSLLFPIFEN
Sbjct: 1189 HAAADILRTKDLPVVMTFLISRALADLNADVRGRMINAGILIIDKNGKDNVSLLFPIFEN 1248
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
YLNK A DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS
Sbjct: 1249 YLNKTAPDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1308
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+CLSPLMQS QD+A L +RL+DQ+MKS+KYGERRGAAFGLAG+VKGFGIS LKKY I
Sbjct: 1309 ACLSPLMQSKQDDAAALFNRLMDQMMKSEKYGERRGAAFGLAGLVKGFGISCLKKYRIVI 1368
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAE 1441
TL+E LA+RNSAK REGALL FECLCE LGR+FEPYVIQMLPLLLV+FSDQV AVREAAE
Sbjct: 1369 TLQESLAERNSAKSREGALLGFECLCETLGRIFEPYVIQMLPLLLVSFSDQVNAVREAAE 1428
Query: 1442 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV
Sbjct: 1429 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1488
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
PKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLL GL+DPN+HTKYSLDILL
Sbjct: 1489 PKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLKGLSDPNEHTKYSLDILL 1548
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
QTTFVN++DAPSLALLVPIVHRGLRERSA+TKK+AAQIVGNMCSLVTEPKDMIPYIGLLL
Sbjct: 1549 QTTFVNSIDAPSLALLVPIVHRGLRERSADTKKRAAQIVGNMCSLVTEPKDMIPYIGLLL 1608
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
PEVKKVLVDPIPEVRSVAARAIGSLI GMGEENFPDLV WL D LKSDNSNVERSGAAQG
Sbjct: 1609 PEVKKVLVDPIPEVRSVAARAIGSLIGGMGEENFPDLVPWLFDTLKSDNSNVERSGAAQG 1668
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
LSEVLAALG +FEH+LPDIIR+CSHQ+ASVRDGYLTLFKYLPRSLGVQFQNYL QVLPA
Sbjct: 1669 LSEVLAALGIDFFEHVLPDIIRHCSHQKASVRDGYLTLFKYLPRSLGVQFQNYLPQVLPA 1728
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND+WRIRQSSVELLGD
Sbjct: 1729 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDSWRIRQSSVELLGD 1788
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
LLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIE+LGRDKRNEVLAALYMVR+DVSLSVR
Sbjct: 1789 LLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEILGRDKRNEVLAALYMVRADVSLSVR 1848
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
QAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLASSSSERRQVAGR+LGELVRKLGERVL
Sbjct: 1849 QAALHVWKTIVANTPKTLREIMPVLMDTLITSLASSSSERRQVAGRSLGELVRKLGERVL 1908
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
P IIPILS+GL DP++SRRQGVC+GLSEVMASAGKSQLL+FM+ELIPTIRTALCDS+ EV
Sbjct: 1909 PLIIPILSQGLNDPNSSRRQGVCVGLSEVMASAGKSQLLTFMNELIPTIRTALCDSVSEV 1968
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
RESAGLAFSTL+KSAGM AIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPHIL
Sbjct: 1969 RESAGLAFSTLYKSAGMLAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTSAVLPHIL 2028
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 2101
PKLVH PLSAFNAHALGALAEVAGPGL+FHL T+LP LLSAMGDDD +VQ+LAKEA+ETV
Sbjct: 2029 PKLVHPPLSAFNAHALGALAEVAGPGLDFHLCTVLPPLLSAMGDDDKEVQTLAKEASETV 2088
Query: 2102 TLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161
LVIDEEG+E L+SEL+KGV D+QA++RRSS+YLIGYF+KNSKLYLVDEAPNMISTLI+L
Sbjct: 2089 VLVIDEEGIEPLMSELVKGVNDSQAAVRRSSSYLIGYFFKNSKLYLVDEAPNMISTLIIL 2148
Query: 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221
LSDSDS+TV AWEALSRV+ SVPKEV PSYIK++RDA+STSRDKERRKKKGGPILIPGF
Sbjct: 2149 LSDSDSSTVTVAWEALSRVIISVPKEVLPSYIKLVRDAVSTSRDKERRKKKGGPILIPGF 2208
Query: 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
CLPKALQP+LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG
Sbjct: 2209 CLPKALQPILPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2268
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341
DRFPWQVKSAILSTL+ +I+KGGI+LKPFLPQLQTTF+KCLQDSTRTVRSSAALALGKLS
Sbjct: 2269 DRFPWQVKSAILSTLTTMIKKGGISLKPFLPQLQTTFVKCLQDSTRTVRSSAALALGKLS 2328
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
LSTRVDPLV DLLSSLQ SD G+ EAILTALKGVLKHAGK+VSSAV+ R YSVLK+L++
Sbjct: 2329 GLSTRVDPLVSDLLSSLQGSDGGVSEAILTALKGVLKHAGKNVSSAVRTRFYSVLKELIH 2388
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNP 2461
DD+ VR A+SILGI++Q +ED QL +L+QEL +LA+SPSW RHGS+L ++ +NP
Sbjct: 2389 DDDEIVRTYASSILGILTQYLEDVQLTELIQELSSLANSPSWPPRHGSILTISSLFHYNP 2448
Query: 2462 SAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASV 2521
+ I S LF +I+D L+ +LKDEKFPLRE STKALGRLLL++ Q P++T + D+L+ +
Sbjct: 2449 ATICSSSLFSTIVDCLRDTLKDEKFPLRETSTKALGRLLLYRSQVDPSDTLLYKDVLSLL 2508
Query: 2522 VSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCA 2581
VS+ HD+SSEVRRRALSA+K+VAKANPSAIM H + GPALAEC+KDG+TPVRLAAERCA
Sbjct: 2509 VSSTHDESSEVRRRALSAIKAVAKANPSAIMSHSTIVGPALAECMKDGNTPVRLAAERCA 2568
Query: 2582 VHAFQLTRG 2590
+HAFQLT+G
Sbjct: 2569 LHAFQLTKG 2577
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562017|ref|XP_002522017.1| Translational activator GCN1, putative [Ricinus communis] gi|223538821|gb|EEF40421.1| Translational activator GCN1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 4029 bits (10448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2010/2497 (80%), Positives = 2202/2497 (88%), Gaps = 78/2497 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKF SHVGCYRLL WSCLLL +SQFA VSKNA+CRVAAAQAS L V+ RSFRERR
Sbjct: 1 MEKQSKFHSHVGCYRLLNWSCLLLCQSQFAAVSKNAVCRVAAAQASTLSTVIHRSFRERR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+ FFHLFSQSP IYK YT+E KDARIPYK SPEL+ LLLEF S + S FE+ +P+FL
Sbjct: 61 ACKRLFFHLFSQSPHIYKIYTEEFKDARIPYKDSPELMWLLLEF-SIASSSFEQVKPVFL 119
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
D YVKA+LNAKEKP LSESF PLF H+S EDFQ++V+P++ KMLKRNPEI+LES+GIL
Sbjct: 120 DTYVKAILNAKEKPATRLSESFQPLFMHLSHEDFQNVVVPSAAKMLKRNPEIVLESVGIL 179
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LK V LDLSKYA+EILSVVL Q RH DE R+ AL I+ CLS+KSSNPDALEAMF A+KA
Sbjct: 180 LKFVKLDLSKYASEILSVVLPQARHTDESRRLTALAIVRCLSQKSSNPDALEAMFTAVKA 239
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRL FPYQR+GM NALQELS A EGKYL+ LS TIC FLLSCYK+EGNEEVKLA
Sbjct: 240 VIGGSEGRLQFPYQRVGMFNALQELSYAPEGKYLSGLSCTICSFLLSCYKNEGNEEVKLA 299
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
+LSA+ASWA RSAD +Q D++SF ASGLKEKE LRRGHLRCLRVIC N DA+LQ+SSLLG
Sbjct: 300 VLSAIASWAARSADAVQPDIVSFIASGLKEKEVLRRGHLRCLRVICKNNDAILQISSLLG 359
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PLIQLVKTGFTKAVQRLDG+YA LI GKIA+ADIKAEET+ KEK+WSL++QNEPSLV +
Sbjct: 360 PLIQLVKTGFTKAVQRLDGVYALLIAGKIASADIKAEETLAKEKIWSLIAQNEPSLVQIS 419
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +D MACV+LL VLL+EHS R+LE FSV+LLLQL++ CHP+W++RKM+HD+T
Sbjct: 420 MASKLSPEDSMACVDLLEVLLIEHSRRMLEAFSVRLLLQLIVFLLCHPNWEVRKMSHDST 479
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
R+IITSVP LSE L+ EF+NFLS V EK+ TSDTD +D QVPFLPSVEV VK L+V
Sbjct: 480 RRIITSVPQLSEVLITEFTNFLSSVAEKVFSLNTSDTDTSLDPQVPFLPSVEVLVKALIV 539
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S LA PS S +++FCSHHP I+GT +DAVW
Sbjct: 540 ISSATLATSPSISTKILFCSHHPCIIGTANKDAVW------------------------- 574
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
K LLG +GLMS N+ EQQAAINSLSTLMSITP DTY+ FEKHL +L D Y HD LSEND
Sbjct: 575 -KGLLGPMGLMSLNVFEQQAAINSLSTLMSITPSDTYMEFEKHLNNLEDRYSHDMLSEND 633
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
I++F+TPEGMLSSEQGVY+AE +A+KNT+Q+KGRFR+ SNHSAKRE R
Sbjct: 634 IRIFHTPEGMLSSEQGVYVAESIASKNTRQAKGRFRI-----------SNHSAKREPTGR 682
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
E +G G+KD GK KK DKGKTAKEEARELLL EE SIREKVQ VQ NLSL+L ALGEMA
Sbjct: 683 EATGVGRKDAGKLAKKTDKGKTAKEEARELLLKEEESIREKVQDVQNNLSLILRALGEMA 742
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++NPVFAHSQLPSLV+FVD LL+SPIV DVA+E LVKL+RCTA PLCNWALDIATAL LI
Sbjct: 743 VSNPVFAHSQLPSLVRFVDSLLRSPIVSDVAFETLVKLARCTAPPLCNWALDIATALCLI 802
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
T EV V +LIP+VG+ N + SL LFERI+ GL+VSCKSGPLPVDSFTFVFP
Sbjct: 803 ATAEVSVLPNLIPTVGKGETNERPSLGLFERIIAGLSVSCKSGPLPVDSFTFVFP----- 857
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
LYHVLGVVP+YQA++G+ALNELCLG
Sbjct: 858 ----------------------------------ALYHVLGVVPAYQASVGAALNELCLG 883
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ +EVASAL+GVY KDVHVRMACLNA+KCIPAVS+RSLP+N+E++TS+WIA+HDPEK +
Sbjct: 884 LKADEVASALYGVYAKDVHVRMACLNAIKCIPAVSSRSLPQNVEIATSIWIALHDPEKLI 943
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AEAAEDIWDRYG DFGTDYSGLFKALSH NYNVR+A AEALA ALDE PDSIQ SLSTLF
Sbjct: 944 AEAAEDIWDRYGCDFGTDYSGLFKALSHINYNVRIATAEALAAALDENPDSIQESLSTLF 1003
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD G DNVDAGW+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1004 SLYIRDATFGEDNVDAGWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1063
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGIMIIDKHG++NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1064 GRMINAGIMIIDKHGKENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1123
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A +LVSR+LDQLMKSDKYG
Sbjct: 1124 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDAASLVSRVLDQLMKSDKYG 1183
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAG+VKGFGISSLK YGI A LREGL DRNSAK REGALLAFECLCEKLG+L
Sbjct: 1184 ERRGAAFGLAGIVKGFGISSLKNYGIIAALREGLVDRNSAKSREGALLAFECLCEKLGKL 1243
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1244 FEPYVIQMLPLLLVSFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1303
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAP+QLSQCLP IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP
Sbjct: 1304 TKQSSVQLLGAMAYCAPRQLSQCLPTIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1363
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI+SLVPTLLM LTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1364 EISSLVPTLLMALTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETK 1423
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE
Sbjct: 1424 KKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1483
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLV WL D LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPD+IRNCSHQRASVR
Sbjct: 1484 NFPDLVPWLFDTLKSDTSNVERSGAAQGLSEVLAALGTKYFEHVLPDLIRNCSHQRASVR 1543
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFK+LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL
Sbjct: 1544 DGYLTLFKFLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1603
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK+LLEGGSDDEGASTEAHGRAI
Sbjct: 1604 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKSLLEGGSDDEGASTEAHGRAI 1663
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IEVLGR+KRNEVLAALYMVR+D+SLSVRQAALHVWKTIVANTPKTLKEIMP+LMNTLISS
Sbjct: 1664 IEVLGREKRNEVLAALYMVRTDMSLSVRQAALHVWKTIVANTPKTLKEIMPILMNTLISS 1723
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGRALGELVRKLGERVLP IIPILS+GL++P ASRRQGVCIGLSEVMAS
Sbjct: 1724 LASSSSERRQVAGRALGELVRKLGERVLPLIIPILSQGLRNPDASRRQGVCIGLSEVMAS 1783
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLL+FMDELIPTIRTALCDS+LEVRESAGLAFSTL+KSAGMQAIDEIVPTLLHALE
Sbjct: 1784 AGKSQLLNFMDELIPTIRTALCDSMLEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALE 1843
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DD+TSDTALDGLKQILSVRT AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN HL
Sbjct: 1844 DDETSDTALDGLKQILSVRTAAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNVHLS 1903
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
T+LPALLSAMG +D DVQ+LAKEAAETV LVIDEEGVE L++ELLKGVGD+ AS+RRSS+
Sbjct: 1904 TVLPALLSAMGGEDKDVQTLAKEAAETVVLVIDEEGVEYLIAELLKGVGDSMASVRRSSS 1963
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
YLIGYF+KNSKLYL DEAPNMISTLIVLLSD DS TVA AWEALSRVV+SVPKEV PSY+
Sbjct: 1964 YLIGYFFKNSKLYLADEAPNMISTLIVLLSDMDSATVAIAWEALSRVVSSVPKEVLPSYL 2023
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGL 2253
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPL+PIFLQGLISGSA+LREQAALGL
Sbjct: 2024 KLVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLVPIFLQGLISGSADLREQAALGL 2083
Query: 2254 GELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313
GELIEVTSEQ+LK+FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG+ALKPFLPQ
Sbjct: 2084 GELIEVTSEQALKDFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGMALKPFLPQ 2143
Query: 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
LQTTFIKCLQD+TRTVR+SAALALGKLSALSTRVDPLV DLLSSLQ SDAG+REAIL AL
Sbjct: 2144 LQTTFIKCLQDNTRTVRTSAALALGKLSALSTRVDPLVSDLLSSLQASDAGVREAILMAL 2203
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433
KGVLK+AGKSVS+AVKIRV+S L DL++HDDD VR+S+ASILGI SQ ME QL DLLQ+
Sbjct: 2204 KGVLKYAGKSVSNAVKIRVFSQLNDLIHHDDDQVRISSASILGITSQYMEAAQLIDLLQQ 2263
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
L N ASSPSW +RHGSVL ++ LRHNPS + S F SI+D LK LKDEKFPLR+ S
Sbjct: 2264 LSNSASSPSWVSRHGSVLTISSLLRHNPSLVITSAEFPSIIDCLKDGLKDEKFPLRDTSI 2323
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
+ALGRLLLHQI S + T+ VDIL+S VSAL DDSSEVRRRALSALK+VAKA+P I
Sbjct: 2324 EALGRLLLHQIYSDQSKTSSYVDILSSTVSALRDDSSEVRRRALSALKAVAKASPPFITT 2383
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
HV++ GPALAECL+D STPVRLAAERCAVH FQLT+G
Sbjct: 2384 HVSIIGPALAECLRDSSTPVRLAAERCAVHTFQLTKG 2420
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477742|ref|XP_004155110.1| PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4015 bits (10413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2008/2588 (77%), Positives = 2262/2588 (87%), Gaps = 18/2588 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIFR+ + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFRNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS KYGERRG AFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSXKYGERRGVAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKK AQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKXAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQATIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
LPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSEQ LKEFVI ITGPLIRIIGD
Sbjct: 2209 LPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSEQVLKEFVIQITGPLIRIIGD 2268
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342
RFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSA
Sbjct: 2269 RFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSA 2328
Query: 2343 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
LSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK+VSS V+ RVY++LKDL+
Sbjct: 2329 LSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGKTVSSGVRTRVYTLLKDLIRQ 2388
Query: 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS SW ARHGS+L ++ LRH PS
Sbjct: 2389 EDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-SWHARHGSMLTISSILRHKPS 2447
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
A+ +F SIL LK++LKDEKFP+RE STKALGRLLL+QIQ A +DIL S+V
Sbjct: 2448 AVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLYQIQRSSATN---LDILTSLV 2504
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582
SAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPALAECL+DGSTPVRLAAERCA+
Sbjct: 2505 SALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPALAECLRDGSTPVRLAAERCAL 2564
Query: 2583 HAFQLTRG 2590
H FQLT+G
Sbjct: 2565 HCFQLTKG 2572
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470206|ref|XP_004152809.1| PREDICTED: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4014 bits (10410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2009/2588 (77%), Positives = 2263/2588 (87%), Gaps = 18/2588 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIF + + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFLNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS+KYGER GAAFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSEKYGERCGAAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKKAAQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKAAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQAAIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
LPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSEQ LKEFVI ITGPLIRIIGD
Sbjct: 2209 LPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSEQVLKEFVIQITGPLIRIIGD 2268
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342
RFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSA
Sbjct: 2269 RFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSA 2328
Query: 2343 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
LSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK+VSS V+ RVY++LKDL+
Sbjct: 2329 LSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGKTVSSGVRTRVYTLLKDLIRQ 2388
Query: 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS SW ARHGS+L ++ LRH PS
Sbjct: 2389 EDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-SWHARHGSMLTISSILRHKPS 2447
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
A+ +F SIL LK++LKDEKFP+RE STKALGRLLLHQIQ A +DIL S+V
Sbjct: 2448 AVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLHQIQRSSATN---LDILTSLV 2504
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582
SAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPALAECL+DGSTPVRLAAERCA+
Sbjct: 2505 SALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPALAECLRDGSTPVRLAAERCAL 2564
Query: 2583 HAFQLTRG 2590
H FQLT+G
Sbjct: 2565 HCFQLTKG 2572
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254318|ref|NP_176659.6| protein ILITYHIA [Arabidopsis thaliana] gi|332196168|gb|AEE34289.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3936 bits (10208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1927/2567 (75%), Positives = 2239/2567 (87%), Gaps = 18/2567 (0%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 23 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 82
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 83 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 142
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 143 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 202
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 203 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 262
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 263 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 322
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 323 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 382
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 383 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 442
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 443 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 502
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 503 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 562
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 563 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 622
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 623 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 682
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 683 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 742
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 743 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 787
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 788 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 847
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 848 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 907
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 908 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 965
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FPI+ERILLS KRT LHDDVLQ+LY H+DP+LPLPRLRMISVLYHVLGVVP+YQA++
Sbjct: 966 TFIFPILERILLSSKRTKLHDDVLQILYMHLDPMLPLPRLRMISVLYHVLGVVPAYQASV 1025
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1026 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1085
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1086 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1145
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1146 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1205
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1206 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1265
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1266 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1325
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1326 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1385
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1386 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1445
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEVLTDTHPKVQSAGQ AL
Sbjct: 1446 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVLTDTHPKVQSAGQLAL 1505
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
QQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALLVPIVHR
Sbjct: 1506 QQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALLVPIVHR 1565
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
GLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+
Sbjct: 1566 GLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAV 1625
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+ILPD+IR
Sbjct: 1626 GSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENILPDLIR 1685
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAALGAGHV
Sbjct: 1686 HCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAALGAGHV 1745
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823
LVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG
Sbjct: 1746 LVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1805
Query: 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883
ASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTLKEIM
Sbjct: 1806 ASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPKTLKEIM 1865
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGV 1943
P+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP +RQGV
Sbjct: 1866 PILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDVDKRQGV 1925
Query: 1944 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003
CIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG+QA+DE
Sbjct: 1926 CIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAGLQAMDE 1985
Query: 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV 2063
I+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHALGALAEV
Sbjct: 1986 IIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHALGALAEV 2045
Query: 2064 AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
AG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SELLKGV D
Sbjct: 2046 AGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSELLKGVSD 2105
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL+RV+ S
Sbjct: 2106 SQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEALARVIGS 2165
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
VPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQGLISGSA
Sbjct: 2166 VPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQGLISGSA 2225
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
ELREQAA+GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAIL+TL I+I++G
Sbjct: 2226 ELREQAAIGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLIILIQRG 2285
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363
G+ALKPFLPQLQTTF+KCLQDSTRT+RSSAA+ALGKLSALSTR+DPLVGDL++S Q +D+
Sbjct: 2286 GMALKPFLPQLQTTFVKCLQDSTRTIRSSAAVALGKLSALSTRIDPLVGDLMTSFQAADS 2345
Query: 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423
G+REAIL+A++GV+KHAGKS+ AV++R++ +LKDL++H+DD VR+SA S+LG++SQ +E
Sbjct: 2346 GVREAILSAMRGVIKHAGKSIGPAVRVRIFDLLKDLMHHEDDQVRISATSMLGVLSQYLE 2405
Query: 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD 2483
QL+ LLQE+ +L++S +W ARHGSVL ++ L+HNPS I S LF S+L+ LKSSLKD
Sbjct: 2406 AAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFSSMLNSLKSSLKD 2465
Query: 2484 EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSV 2543
EKFPLRE+STKALGRLLL Q+ + P+NT VV+D+L+S+VSALHDDSSEVRRRALS+LK+
Sbjct: 2466 EKFPLRESSTKALGRLLLKQLATDPSNTKVVIDVLSSIVSALHDDSSEVRRRALSSLKAF 2525
Query: 2544 AKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
AK NPSA M ++++ GP LAECLKDG+TPVRLAAERCA+H FQLT+G
Sbjct: 2526 AKDNPSATMANISVIGPPLAECLKDGNTPVRLAAERCALHVFQLTKG 2572
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512395|ref|XP_003626486.1| Translational activator GCN1 [Medicago truncatula] gi|355501501|gb|AES82704.1| Translational activator GCN1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3923 bits (10174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2002/2711 (73%), Positives = 2286/2711 (84%), Gaps = 124/2711 (4%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT----EMSPEIASFLVDIIFKTFS 59
A+S +L+S++ VSTSST +R RIF+ +V + + ++ EMS E+AS L DIIF+T +
Sbjct: 2 AESLQSLVSLSELVSTSSTNQRLRIFQREVPAFLNSSSTSDEMSTELASLLTDIIFRTVA 61
Query: 60 VYDDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLS 119
+YDDR SRKAVDDVI K L FMKTFAAALVQ+MEKQ K QSHVGCYRLL WSCLLLS
Sbjct: 62 IYDDRRSRKAVDDVIVKSLSGTVFMKTFAAALVQSMEKQLKSQSHVGCYRLLSWSCLLLS 121
Query: 120 KSQFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELK 179
KS+F+TVSKNALCRVA+ QASLL++V +RSFRERRACK+ FHLF + PDIYK Y E+K
Sbjct: 122 KSKFSTVSKNALCRVASGQASLLNLVWRRSFRERRACKKKIFHLFKELPDIYKVYVQEVK 181
Query: 180 DARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPL 239
+ IPYK SPEL+ LLLEF ++S SLF + + FLDIYV A+L+AK KP K L E+F PL
Sbjct: 182 NGSIPYKDSPELLLLLLEFSTRSSSLFGEFKSAFLDIYVNAILSAKAKPGKSLIEAFHPL 241
Query: 240 FTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRH 299
+ MS EDF +IVLPA++KMLKRNPEI+LES+GILLKSV LDLSKYA EILSVVL Q RH
Sbjct: 242 YLQMSHEDFGTIVLPAAVKMLKRNPEIVLESVGILLKSVKLDLSKYAAEILSVVLVQARH 301
Query: 300 ADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQEL 359
ADEGR+ AL I+ LS+KSSNPDAL+ MF AIK+VI GSEGRLAFPYQR+GMVNA+QEL
Sbjct: 302 ADEGRRDVALDIVKNLSQKSSNPDALDIMFNAIKSVIKGSEGRLAFPYQRVGMVNAIQEL 361
Query: 360 SNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFA 419
SNA +GKYL +LS TIC FLLSCYKD+GNEEVK+A LSA+ASWA +S +IIQ L+SFFA
Sbjct: 362 SNAPDGKYLINLSQTICDFLLSCYKDDGNEEVKIATLSAIASWADKSTNIIQESLVSFFA 421
Query: 420 SGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLI 479
SGLKEKE LRRG LR LR IC N DAVL++S LL PL+QLVKTGFTKAVQRLDGIYA L+
Sbjct: 422 SGLKEKEILRRGFLRSLRAICKNADAVLKMSPLLVPLVQLVKTGFTKAVQRLDGIYALLL 481
Query: 480 VGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHS 539
VGKIAA DIKAEE + KEK+W+ +SQNEPSL+P +M SKL+V+D +AC++LL VLL+EH
Sbjct: 482 VGKIAAVDIKAEEILVKEKIWATISQNEPSLIPISMASKLAVEDSIACIDLLEVLLLEHL 541
Query: 540 HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLV 599
R L FSV LLQLV+ F CHP WDIR++A + ++IITSVP LSE +L EFS +L+LV
Sbjct: 542 QRTLSNFSVTSLLQLVIFFICHPRWDIRRIACNVAKRIITSVPQLSEDILSEFSKYLNLV 601
Query: 600 GEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSI 659
EK+ + SDTD +D QVPF+PSVEV VK LL+++ A+ P + R+I CSHHP +
Sbjct: 602 EEKVSALRISDTDISLDPQVPFIPSVEVLVKALLIMSPAAMKVAPDSFVRIILCSHHPCV 661
Query: 660 VGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSL 719
VG+ KRDAVW+RL KCL+ GF+VI+IV+A+V N +VLLG +GL SAN LEQ+AAI+SL
Sbjct: 662 VGSAKRDAVWKRLCKCLQTHGFDVIDIVAANVINFVQVLLGPMGLRSANPLEQEAAISSL 721
Query: 720 STLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAA 779
S LMSI P DTY FEKHL +LP+ + H++LSENDIQ+F+TPEGMLS+EQG+Y+AE VA
Sbjct: 722 SNLMSIIPGDTYTEFEKHLLNLPERFSHNALSENDIQIFHTPEGMLSTEQGIYVAESVAF 781
Query: 780 KNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKA-------D 832
KNTKQ+KGRFRMY E+DG+DH SNHS KR+ +RE +GAGKKD GK+TKKA D
Sbjct: 782 KNTKQAKGRFRMYGEEDGLDHTQSNHSMKRDQPSREAAGAGKKDSGKTTKKAGKFSTSID 841
Query: 833 KGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSL---- 888
KGKTAKEEARE LL EEASIR++V+ +Q+NLSLML LG MAIAN +FAHS+LPS+
Sbjct: 842 KGKTAKEEARESLLKEEASIRDRVREIQKNLSLMLRTLGNMAIANSIFAHSRLPSMVLEC 901
Query: 889 --------------VKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
VKFV+PLL+SPIV D A+E LV LSRCTA PLC+WALDI+TALRL+
Sbjct: 902 FLLIFVDLLPYICDVKFVEPLLRSPIVSDEAFETLVMLSRCTASPLCDWALDISTALRLV 961
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VT+EVH+ DL+PSV E N K S LFERI++GL+ SCKSG LPVDSFTFVFPI+ERI
Sbjct: 962 VTDEVHLLLDLVPSVAEEQVNQKPSHGLFERIIDGLSTSCKSGALPVDSFTFVFPIMERI 1021
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMIS-------VLYHVLGVVPSYQAAIGSA 1046
LL K+T HDDVL+++Y HMD LPLPR+RM+S VLYH L VVP+Y+A+IG A
Sbjct: 1022 LLCSKKTKFHDDVLRLIYLHMDAHLPLPRVRMLSVIFPTLHVLYHALSVVPAYKASIGPA 1081
Query: 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV 1106
LNEL LG QP+EVASAL+GVY KDVHVRMACLNAVKCIPAVS+RSLP+N EV+TS+WIA+
Sbjct: 1082 LNELSLGFQPDEVASALYGVYAKDVHVRMACLNAVKCIPAVSSRSLPQNTEVATSIWIAL 1141
Query: 1107 HDPEK---------------SVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAA 1151
HDPEK SVAE AEDIWD YG+DFGTD+SG+FKALSH NYNVRLAAA
Sbjct: 1142 HDPEKKLLFLALGEFGWMSTSVAEVAEDIWDHYGFDFGTDFSGIFKALSHVNYNVRLAAA 1201
Query: 1152 EALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK 1211
EALA ALDE+PD IQ SLSTLFSLYIRD+G+G DNVDAGWLGRQG+ALALHSAADVLRTK
Sbjct: 1202 EALAAALDEHPDLIQESLSTLFSLYIRDMGIGNDNVDAGWLGRQGVALALHSAADVLRTK 1261
Query: 1212 DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEE 1271
DLPV+MTFLISRALAD NADVRGRM+N+GI+IIDK+G+DNVSLLFPIFENYLNK A DEE
Sbjct: 1262 DLPVVMTFLISRALADLNADVRGRMINSGILIIDKNGKDNVSLLFPIFENYLNKTAPDEE 1321
Query: 1272 KYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331
+YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE+VQRAVS+CLSPLMQS
Sbjct: 1322 QYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSESVQRAVSACLSPLMQSK 1381
Query: 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
QDEA TLV+RLLDQ+MKS+KYGERRGAAFGLAGVVKGFG+S LKKY I L+E LA+RN
Sbjct: 1382 QDEADTLVTRLLDQMMKSEKYGERRGAAFGLAGVVKGFGLSCLKKYKIVIILQECLAERN 1441
Query: 1392 SAKRREGALLAFECLCEKLGRLFEP---------YVIQMLPLLLVAFSDQVVAVREAAEC 1442
SAK REGALL FECLCE LG+LFEP YVIQMLPLLLV+FSDQV AVREAAEC
Sbjct: 1442 SAKSREGALLGFECLCETLGKLFEPYVDKFLTHKYVIQMLPLLLVSFSDQVAAVREAAEC 1501
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1502 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1561
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTD+HPKVQSAGQTALQQVGSVIKNPEIA+LVPTLL GL+DPN+HTKYSLDILLQ
Sbjct: 1562 KLTEVLTDSHPKVQSAGQTALQQVGSVIKNPEIAALVPTLLKGLSDPNEHTKYSLDILLQ 1621
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTFVN++DAPSLALLVPIVHRGLR RSA+TKK+A+QIVGNMCSLVTEPKDMIPYIGLLLP
Sbjct: 1622 TTFVNSIDAPSLALLVPIVHRGLRVRSADTKKRASQIVGNMCSLVTEPKDMIPYIGLLLP 1681
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLI GMGE+NFPDLV WL + LKSDNSNVERSGAAQGL
Sbjct: 1682 EVKKVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGL 1741
Query: 1683 SEVL-------------------AALGTVYFEHILP------------------------ 1699
SEVL +G F ++P
Sbjct: 1742 SEVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGLSE 1801
Query: 1700 ---------------DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744
DIIRNCSHQ+ASVRDGYLTLFKYLPRSLGVQFQ YL QVLPAILD
Sbjct: 1802 VLAALGVEFFEHVFPDIIRNCSHQKASVRDGYLTLFKYLPRSLGVQFQKYLPQVLPAILD 1861
Query: 1745 GLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELL 1799
GLADENESVRDAALGAGHVLVEHYATT SLPLLLPAVEDGI ND+WRIRQSSVELL
Sbjct: 1862 GLADENESVRDAALGAGHVLVEHYATTYALSLSLPLLLPAVEDGIINDSWRIRQSSVELL 1921
Query: 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
GDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR+KRNE+LAALYMVR+DVSLS
Sbjct: 1922 GDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGREKRNEILAALYMVRADVSLS 1981
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
VRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLAS+SSERRQVAGR+LGELV KLGER
Sbjct: 1982 VRQAALHVWKTIVANTPKTLREIMPVLMDTLIASLASASSERRQVAGRSLGELVGKLGER 2041
Query: 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979
VLP IIPILS+GL DP +SRRQGVC GLSEVMASAGKSQL++FM +LIPTIRTALCDS
Sbjct: 2042 VLPLIIPILSQGLSDPDSSRRQGVCSGLSEVMASAGKSQLMTFMTDLIPTIRTALCDSEP 2101
Query: 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039
VRESAGLAFSTL+KSAGMQAIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPH
Sbjct: 2102 AVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDKTSDTALDGLKQILSVRTSAVLPH 2161
Query: 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAE 2099
ILPKLVH PLSAFNAHALGALAEVAGPGL+FHLGT+LP LLSAM D D +VQ+ AK+AAE
Sbjct: 2162 ILPKLVHPPLSAFNAHALGALAEVAGPGLDFHLGTVLPPLLSAMSDVDQEVQTSAKKAAE 2221
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
TV LVIDEEGVE L+SELLKGV D+QA+IRRSS+YLIGYF+KNSKLYLVDEAPNMISTLI
Sbjct: 2222 TVVLVIDEEGVEPLISELLKGVSDSQAAIRRSSSYLIGYFFKNSKLYLVDEAPNMISTLI 2281
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
VLLSD DS+TV AWEALSRV+ SVPKEV PSYIK++RDA+S+SRDKERRKKKGGP+LIP
Sbjct: 2282 VLLSDPDSSTVTVAWEALSRVIMSVPKEVLPSYIKLVRDAVSSSRDKERRKKKGGPVLIP 2341
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
GFCLPK+LQP+LPIFLQGLISGSAELREQAALGLGELIEV EQSLKE VIPITGPLIRI
Sbjct: 2342 GFCLPKSLQPILPIFLQGLISGSAELREQAALGLGELIEVAGEQSLKEVVIPITGPLIRI 2401
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
IGDRFPWQVKSAILSTL+I+IRKGGI+LKPFLPQLQTTF+KCLQD+TRT+RS AA+ALG
Sbjct: 2402 IGDRFPWQVKSAILSTLTIMIRKGGISLKPFLPQLQTTFVKCLQDNTRTIRSGAAVALGM 2461
Query: 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399
LS L+TRVDPLV DLLSSLQ SD G+REAIL+ALKGVLKHAGK+VSSAV R+YSVLKDL
Sbjct: 2462 LSGLNTRVDPLVSDLLSSLQGSDGGVREAILSALKGVLKHAGKNVSSAVSSRIYSVLKDL 2521
Query: 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRH 2459
++HDDD VRV AASILG+++Q +E Q +L+QE+ +LA+SP+W RHGS+L ++ L
Sbjct: 2522 IHHDDDRVRVYAASILGVLTQYLEAVQFTELIQEVTSLANSPNWPPRHGSILTISSLLYR 2581
Query: 2460 NPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILA 2519
NP+ I S LF +++D L+ +LKDEKFPLRE+STKALGRLLL++ Q P++T + D+L+
Sbjct: 2582 NPAPIFSSSLFQTVVDCLRDALKDEKFPLRESSTKALGRLLLYRAQEDPSDTVLYKDVLS 2641
Query: 2520 SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+V++ D+SSEVRRRALSA+K+VAKANPSAIM H + GPALAECLKD +TPVRLAAER
Sbjct: 2642 LLVTSTRDESSEVRRRALSAIKAVAKANPSAIMSHGTVIGPALAECLKDANTPVRLAAER 2701
Query: 2580 CAVHAFQLTRG 2590
CA+HAFQLT+G
Sbjct: 2702 CAIHAFQLTKG 2712
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183637|ref|NP_001185313.1| protein ILITYHIA [Arabidopsis thaliana] gi|332196169|gb|AEE34290.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3844 bits (9969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1895/2573 (73%), Positives = 2203/2573 (85%), Gaps = 63/2573 (2%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 142 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 201
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 202 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 261
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 262 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 321
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 322 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 381
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 382 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 441
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 442 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 501
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 502 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 561
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 562 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 621
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 622 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 681
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 682 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 741
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 742 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 801
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 802 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 861
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 862 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 906
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 907 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 966
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 967 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 1026
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 1027 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 1084
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FP VLYHVLGVVP+YQA++
Sbjct: 1085 TFIFP---------------------------------------VLYHVLGVVPAYQASV 1105
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1106 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1165
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1166 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1225
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1226 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1285
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1286 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1345
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1346 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1405
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1406 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1465
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1466 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1525
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV------LTDTHPKVQS 1517
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEV LTDTHPKVQS
Sbjct: 1526 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVFKTIQVLTDTHPKVQS 1585
Query: 1518 AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
AGQ ALQQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALL
Sbjct: 1586 AGQLALQQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALL 1645
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
VPIVHRGLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS
Sbjct: 1646 VPIVHRGLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1705
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
VAARA+GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+I
Sbjct: 1706 VAARAVGSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENI 1765
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757
LPD+IR+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAA
Sbjct: 1766 LPDLIRHCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAA 1825
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
LGAGHVLVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG
Sbjct: 1826 LGAGHVLVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1885
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
GSDDEGASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPK
Sbjct: 1886 GSDDEGASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPK 1945
Query: 1878 TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937
TLKEIMP+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP
Sbjct: 1946 TLKEIMPILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDV 2005
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+RQGVCIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG
Sbjct: 2006 DKRQGVCIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAG 2065
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
+QA+DEI+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHAL
Sbjct: 2066 LQAMDEIIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHAL 2125
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
GALAEVAG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SEL
Sbjct: 2126 GALAEVAGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSEL 2185
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
LKGV D+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL
Sbjct: 2186 LKGVSDSQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEAL 2245
Query: 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237
+RV+ SVPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQG
Sbjct: 2246 ARVIGSVPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQG 2305
Query: 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS 2297
LISGSAELREQAA+GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAIL+TL
Sbjct: 2306 LISGSAELREQAAIGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLI 2365
Query: 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357
I+I++GG+ALKPFLPQLQTTF+KCLQDSTRT+RSSAA+ALGKLSALSTR+DPLVGDL++S
Sbjct: 2366 ILIQRGGMALKPFLPQLQTTFVKCLQDSTRTIRSSAAVALGKLSALSTRIDPLVGDLMTS 2425
Query: 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 2417
Q +D+G+REAIL+A++GV+KHAGKS+ AV++R++ +LKDL++H+DD VR+SA S+LG+
Sbjct: 2426 FQAADSGVREAILSAMRGVIKHAGKSIGPAVRVRIFDLLKDLMHHEDDQVRISATSMLGV 2485
Query: 2418 MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477
+SQ +E QL+ LLQE+ +L++S +W ARHGSVL ++ L+HNPS I S LF S+L+ L
Sbjct: 2486 LSQYLEAAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFSSMLNSL 2545
Query: 2478 KSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRAL 2537
KSSLKDEKFPLRE+STKALGRLLL Q+ + P+NT VV+D+L+S+VSALHDDSSEVRRRAL
Sbjct: 2546 KSSLKDEKFPLRESSTKALGRLLLKQLATDPSNTKVVIDVLSSIVSALHDDSSEVRRRAL 2605
Query: 2538 SALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
S+LK+ AK NPSA M ++++ GP LAECLKDG+TPVRLAAERCA+H FQLT+G
Sbjct: 2606 SSLKAFAKDNPSATMANISVIGPPLAECLKDGNTPVRLAAERCALHVFQLTKG 2658
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2612 | ||||||
| RGD|1593434 | 2672 | Gcn1l1 "GCN1 general control o | 0.582 | 0.569 | 0.410 | 0.0 | |
| UNIPROTKB|Q92616 | 2671 | GCN1L1 "Translational activato | 0.578 | 0.565 | 0.405 | 0.0 | |
| UNIPROTKB|F1MZT7 | 2676 | GCN1L1 "Uncharacterized protei | 0.570 | 0.556 | 0.411 | 0.0 | |
| UNIPROTKB|F1NAK4 | 2672 | GCN1L1 "Uncharacterized protei | 0.563 | 0.550 | 0.407 | 0.0 | |
| FB|FBgn0039959 | 2630 | CG17514 [Drosophila melanogast | 0.574 | 0.570 | 0.401 | 0.0 | |
| DICTYBASE|DDB_G0279487 | 2667 | DDB_G0279487 "GCN1-like protei | 0.675 | 0.661 | 0.363 | 4.7e-302 | |
| UNIPROTKB|F1RJK5 | 1280 | GCN1L1 "Uncharacterized protei | 0.467 | 0.954 | 0.426 | 2.5e-262 | |
| POMBASE|SPAC18G6.05c | 2670 | SPAC18G6.05c "translation elon | 0.528 | 0.516 | 0.376 | 1.2e-261 | |
| UNIPROTKB|G4MR95 | 2678 | MGG_04710 "Translational activ | 0.650 | 0.634 | 0.339 | 4.3e-259 | |
| ASPGD|ASPL0000003073 | 2672 | AN10734 [Emericella nidulans ( | 0.512 | 0.501 | 0.384 | 1e-256 |
| RGD|1593434 Gcn1l1 "GCN1 general control of amino-acid synthesis 1-like 1 (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2940 (1040.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 643/1568 (41%), Positives = 937/1568 (59%)
Query: 1051 CLGLQPNEVASALHGVYTKDVHVRMACLNAVK----CIPAVSTRSLPENIEVSTSLWIAV 1106
C + EV L + + VR L + +PA T + + LW+
Sbjct: 1077 CAFAEQEEVDVLLAALQSPCASVRETALRGLMELHLVLPAPDTDE-KNGLNLLRRLWVVK 1135
Query: 1107 HDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDEYPDS- 1164
D E+ + + AE +W G D +D S L + + VR Y
Sbjct: 1136 FDKEEEIRKLAERLWTTMGLDLQSDLCSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQA 1195
Query: 1165 --IQGSLSTLFS--LY----IRDIGLG---GDNVDAGWLGRQGIALALHSAADVLRTKDL 1213
+ G L ++ LY + D LG ++ W R G+ALAL+ + L + +
Sbjct: 1196 AEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQWEARCGLALALNKLSQYLDSSQV 1254
Query: 1214 PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 1273
+ F + AL D N DVR ML+A + ++ HG++NV+ L P+FE +L K A ++ Y
Sbjct: 1255 KPLFQFFVPDALNDRNPDVRKCMLDAALATLNAHGKENVNSLLPVFEEFL-KDAPNDASY 1313
Query: 1274 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333
D VR+ VV+ G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+ ++++
Sbjct: 1314 DAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAVKE 1373
Query: 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393
+A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ +
Sbjct: 1374 DAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNF 1433
Query: 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSA 1453
+RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS LSA
Sbjct: 1434 RRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSA 1493
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H
Sbjct: 1494 HGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHV 1553
Query: 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573
KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+ +DAPS
Sbjct: 1554 KVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPS 1613
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633
LAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+P
Sbjct: 1614 LALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVP 1672
Query: 1634 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
EVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG
Sbjct: 1673 EVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEK 1732
Query: 1694 FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL LADENE
Sbjct: 1733 LEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENE 1792
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VRD AL AG ++ YA T++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +G
Sbjct: 1793 FVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTG 1852
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
K E S+D+ T +AII LG D+RN VLA LYM RSD L VRQA+LHVWK +
Sbjct: 1853 KMTTETASEDDNFGTAQSNKAIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIV 1912
Query: 1872 VANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931
V+NTP+TL+EI+P L L+ ++R +A R LG+LVRKLGE++LP IIPIL G
Sbjct: 1913 VSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEG 1972
Query: 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991
L+ + RQGVCIGLSE+M S + +L F + L+PT R ALCD + EVRE+A F
Sbjct: 1973 LRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQ 2032
Query: 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 2051
L + G QA+++I+P LL L+D++ S+ ALDGLKQ+++V++ VLP+++PKL P+
Sbjct: 2033 LHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAVKSRVVLPYLVPKLTTPPV-- 2090
Query: 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXX 2109
N L L+ VAG L HLG ILPA++ A+ + + L + V L + D
Sbjct: 2091 -NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTG 2149
Query: 2110 XXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169
+ + +R+++A ++ + SK +++S LI L +DS
Sbjct: 2150 HRIIIEDLLEATRSPEVGMRQAAAIILNMYCSRSKADYTSHLRSLVSGLIRLFNDSSPVV 2209
Query: 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQ 2228
+ +W+AL+ + + Q + I+ I ++ R + +PGFCLPK +
Sbjct: 2210 LGESWDALNAITKKLDAGNQLALIEEFHKEIRYIGNECRGEH------VPGFCLPKKGVT 2263
Query: 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288
+LP+ +G+++GS E +E+AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W V
Sbjct: 2264 SILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWSV 2323
Query: 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVD 2348
K+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS R VR +VD
Sbjct: 2324 KAALLETLSLLLGKVGIALKPFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVD 2383
Query: 2349 PLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 2407
PL +LL+ ++V D GIR+ +L AL+ V++ AG V +A++ + S+L ++ HD+D+
Sbjct: 2384 PLFTELLNGIRVVEDPGIRDTMLQALRFVIQGAGAKVDAAIRKNIVSLLLGMLGHDEDNT 2443
Query: 2408 RVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISM 2466
R+S+A LG + + W RHG L + + PS +
Sbjct: 2444 RISSAGCLGELCAFLTEEELNTVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCT 2503
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
+ D + S+ ++ P+ + + +G L+ + I++G + L ++ L
Sbjct: 2504 GKYSNEVQDMVLSNAVADRIPIAVSGIRGMGFLMKYHIETGGGQLPPRLSTL--LIKCLQ 2561
Query: 2527 DDSSEVRRRALSALKSVAKAN--PSAIMVHVAL--FGPALAECLKDGSTPVRLAAERCAV 2582
+ SS++R L A K + AN P + A+ AL + KD +T VR +E+ V
Sbjct: 2562 NPSSDIR---LVAEKMIWWANKEPRPALEPQAIKPILKALLDNTKDKNTVVRAYSEQAIV 2618
Query: 2583 HAFQLTRG 2590
+ +L +G
Sbjct: 2619 NLLKLRQG 2626
|
|
| UNIPROTKB|Q92616 GCN1L1 "Translational activator GCN1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2928 (1035.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 630/1554 (40%), Positives = 933/1554 (60%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1113 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDLCSLLIDDVIYH 1171
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1172 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1230
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D + DVR ML+A + ++ HG++
Sbjct: 1231 WEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAALATLNTHGKE 1290
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L+
Sbjct: 1291 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALS 1349
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1350 TPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1409
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1410 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1469
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1470 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1529
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+
Sbjct: 1530 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPS 1589
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+
Sbjct: 1590 RKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQ 1648
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L +
Sbjct: 1649 KDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQ 1708
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG 1728
S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP + G
Sbjct: 1709 SSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFG 1768
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN 1788
+F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F+D
Sbjct: 1769 DKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDL 1828
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG ++RN VLA
Sbjct: 1829 WRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAG 1888
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRA 1908
LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A R
Sbjct: 1889 LYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAART 1948
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S + +L F + L+P
Sbjct: 1949 LGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVP 2008
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
T R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGLKQ+
Sbjct: 2009 TARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQV 2068
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-D 2087
+++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2069 MAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLG 2125
Query: 2088 MDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146
+ L + V L + D + + +R+++A ++ + SK
Sbjct: 2126 TPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIILNIYCSRSKAD 2185
Query: 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
+++S LI L +DS + +W+AL+ + + Q + I+ + I ++
Sbjct: 2186 YTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRLIGNE 2245
Query: 2207 ERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 2265
+ + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS +L
Sbjct: 2246 SKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADAL 2299
Query: 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS 2325
+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS
Sbjct: 2300 RPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKALQDS 2359
Query: 2326 TRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQ-VSDAGIREAILTALKGVLKHAGKSV 2384
R VR +VDPL +LL+ ++ + D G+R+ +L AL+ V++ AG V
Sbjct: 2360 NRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALRFVIQGAGAKV 2419
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SW 2443
+ ++ + S+L ++ HD+D+ R+S+A LG + + W
Sbjct: 2420 DAVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQCLLADVSGIDW 2479
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
RHG L + + P + + + + SS ++ P+ + + +G L+ H
Sbjct: 2480 MVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGVRGMGFLMRHH 2539
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM-VHVALFGP-- 2560
I++G + L V L + SS++R L A K + AN + + P
Sbjct: 2540 IETGGGQLPAKLSSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPPLDPQAIKPIL 2594
Query: 2561 -ALAECLKDGSTPVRLAAERCAVHAFQLTRGI-IYSRSTKIYNRLGCETVIKIS 2612
AL + KD +T VR +++ V+ ++ +G ++ +KI + E + +++
Sbjct: 2595 KALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLSKILDVASLEVLNEVN 2648
|
|
| UNIPROTKB|F1MZT7 GCN1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2924 (1034.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 631/1534 (41%), Positives = 922/1534 (60%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1115 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSTMGLDLQPDLCSLLIDDVIYH 1173
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1174 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1232
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D N DVR ML+A + ++ HG++
Sbjct: 1233 WEARCGLALALNKLSQCLDSSQVKPLFQFFVPDALNDRNPDVRKCMLDAALATLNTHGKE 1292
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L
Sbjct: 1293 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALA 1351
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V++CL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1352 TPSQQVQESVANCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1411
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1412 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1471
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1472 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1531
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLT 1547
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI A++ P LL LT
Sbjct: 1532 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILGHAAIAPVLLDALT 1591
Query: 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607
DP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL
Sbjct: 1592 DPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL- 1650
Query: 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 1667
T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L
Sbjct: 1651 TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLT 1710
Query: 1668 SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPR 1725
+ S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP
Sbjct: 1711 YEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPI 1770
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785
+ G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F
Sbjct: 1771 TFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLF 1830
Query: 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845
+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG D+RN V
Sbjct: 1831 DDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVDRRNRV 1890
Query: 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVA 1905
LA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A
Sbjct: 1891 LAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIA 1950
Query: 1906 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965
R LG+LVRKLGE++LP IIPIL GL+ P + RQGVCIGLSE+M S + +L F +
Sbjct: 1951 ARTLGDLVRKLGEKILPEIIPILEEGLRSPKSDERQGVCIGLSEIMKSTSRDAVLYFSES 2010
Query: 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 2025
L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGL
Sbjct: 2011 LVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGL 2070
Query: 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085
KQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2071 KQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKE 2127
Query: 2086 D-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNS 2143
+ L + V L + D + + +R+++A ++ + S
Sbjct: 2128 KLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMRQAAAIILNIYCSRS 2187
Query: 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203
K +++S LI L +DS + +W+AL+ + + Q + I+ + I
Sbjct: 2188 KADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRFI 2247
Query: 2204 RDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
++ R + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS
Sbjct: 2248 GNESRGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSA 2301
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322
+L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K L
Sbjct: 2302 DALRPSVVNITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKAL 2361
Query: 2323 QDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAG 2381
QDS R VR +VDPL +LL+ ++V D G+R+ +L AL+ V++ AG
Sbjct: 2362 QDSNRGVRLKAADALGKLISIHIKVDPLFMELLNGIRVMEDPGVRDTMLQALRFVIQGAG 2421
Query: 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP 2441
V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 2422 AKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSTVLQQYLLADVSG 2481
Query: 2442 -SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500
W RHG L + + P + + + D + S+ + P+ + + +G L+
Sbjct: 2482 IDWMVRHGRSLALSVAVSVAPGRLCVGKYGSDVQDMILSNALTFQIPIAVSGVRGMGFLM 2541
Query: 2501 LHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFG 2559
H I++G + L + L + SS++R L A K + AN + +
Sbjct: 2542 KHHIETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWANKDPLPALDPQAIK 2596
Query: 2560 P---ALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
P AL + KD +T VR +++ V+ ++ +G
Sbjct: 2597 PILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQG 2630
|
|
| UNIPROTKB|F1NAK4 GCN1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2867 (1014.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 617/1514 (40%), Positives = 917/1514 (60%)
Query: 1102 LWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDE 1160
LW+ D E + + AE +W+ G + D S L K + + VR +
Sbjct: 1130 LWVVKFDVEDEIQKLAERLWESMGLELQPDLCSLLIKDVIYHEEAVRQAGAEALSKAVAQ 1189
Query: 1161 YPDSIQGSLSTLFSLYIRDI--------GLG---GDNVDAGWLGRQGIALALHSAADVLR 1209
Y ++ L +Y + LG ++ W R GIALAL+ ++ L
Sbjct: 1190 YQHQAAEVMNKLTEIYQEKLYRPPPVLDALGRVISESPPDQWEARCGIALALNKLSEHLD 1249
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ + + F + AL D N +VR ML+A + ++ HG+DNV+ L P+FE +L K A +
Sbjct: 1250 SSQVKPLFQFFVPDALNDRNPEVRKCMLDAALSTLNTHGKDNVNSLLPVFEEFL-KNAPN 1308
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ YD VR+ VVI G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+
Sbjct: 1309 DASYDAVRQSVVILMGSLAKHLDKSDPKVKPIVGKLIAALSTPSQQVQESVASCLPPLVP 1368
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
+++++A ++ +L+ L++SDKY ER+GAA+GLAG+VKG GI SLK+ + TL + + D
Sbjct: 1369 AIKEDAGGMIQKLMQLLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMTTLTDAIQD 1428
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMS 1449
+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS
Sbjct: 1429 KKNFRRREGALFAFEMLCSMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMS 1488
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQS--SVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507
LS GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEV
Sbjct: 1489 NLSTHGVKLVLPSLLAALEEESWRTKAGTGSVELLGAMAYCAPKQLSSCLPNIVPKLTEV 1548
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567
LTD+H KVQ+AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+
Sbjct: 1549 LTDSHVKVQNAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVH 1608
Query: 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627
+DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K
Sbjct: 1609 FIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKAS 1667
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687
L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A
Sbjct: 1668 LLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMA 1727
Query: 1688 ALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LG E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL
Sbjct: 1728 GLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFIPYVGPIIPCILKA 1787
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENE VRD AL AG ++ YA T++ LLLP +EDG+F+D WRIR SSV+LLGDLLF
Sbjct: 1788 LADENEFVRDTALRAGQRIISMYAETAIALLLPQLEDGLFDDLWRIRFSSVQLLGDLLFH 1847
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
++G +GK E S+D+ T +AII LG ++RN VLA LYM RSD L VRQA+L
Sbjct: 1848 ISGVTGKMTTETASEDDNFGTAQSNKAIINALGVERRNRVLAGLYMGRSDTQLVVRQASL 1907
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSII 1925
HVWK +V+NTP+TL+EI+P L L+ ++R VA R LG+LVRKLGE++LP II
Sbjct: 1908 HVWKIVVSNTPRTLREILPTLFGLLLKFLASTCADKRTVAARTLGDLVRKLGEKILPEII 1967
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL GL+ RQGVCIGLSE+M S + +L F + L+PT+R ALCD + EVRE+A
Sbjct: 1968 PILEDGLRSDKNDERQGVCIGLSEIMKSTSRDAVLVFSESLVPTVRKALCDPLEEVREAA 2027
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
F L + G QA+++I+P LL L++++TSD A+DGLKQ+++V++ VLP+++PKL
Sbjct: 2028 AKTFEQLHSTIGHQALEDILPFLLKQLDNEETSDFAVDGLKQVMAVKSRVVLPYLVPKLT 2087
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLV 2104
P+ N L L+ VAG L HL ILPA++SA+ + + L ++V L
Sbjct: 2088 TPPV---NTRVLAFLSSVAGDALTRHLSVILPAMMSALKEKLGTSEEQLEMANCQSVILS 2144
Query: 2105 I-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 2163
+ D + +R+++A ++ + +K N++S LI L +
Sbjct: 2145 VEDDVGQRIITEDLLEATRSPDVGMRQAAAIILNIYCSKTKADYTGHLKNLVSGLIRLFN 2204
Query: 2164 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223
D++ + +W+AL+ + + Q + I+ + I ++ + + +PGFC+
Sbjct: 2205 DTNPVVLNESWDALNSITKKLDAGNQLALIEDLHKDIRVVGNEAKGEH------VPGFCI 2258
Query: 2224 PK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
PK + +L + +G+++G+ E +E+AA LG +I++TS ++LK V+ ITGPLIRI+GD
Sbjct: 2259 PKKGVTSILLVLREGVLTGNPEQKEEAAKALGLVIKLTSAEALKPSVVSITGPLIRILGD 2318
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXX 2342
RF W VK A+L TLS+++ K IALKPFLPQLQTTF K LQDS R VR
Sbjct: 2319 RFSWNVKVALLETLSLLLAKVEIALKPFLPQLQTTFTKALQDSNRAVRLKAADALGKLIV 2378
Query: 2343 XXTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
+VDPL +LL+ ++ SD + IR+ +L AL+ V + AG V + ++ + +VL ++
Sbjct: 2379 IHVKVDPLFTELLNGIRSSDDSAIRDTMLQALRFVTRGAGAKVDATIRKNISTVLLGMLG 2438
Query: 2402 HDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHN 2460
HD+D R+++A L + + W RHG L + +
Sbjct: 2439 HDEDATRMASAGCLAELCAFLSEEELNTVLHQHLLADISGIDWMVRHGRSLALSVAVNVA 2498
Query: 2461 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 2520
P + + S+L+ + S+ ++ P+ + + +G L+ + ++ G N + L
Sbjct: 2499 PYRLCSPKYYNSVLEMILSNATADRIPIAVSGIRGMGFLMKYHMEEG-GNLPPKLSNL-- 2555
Query: 2521 VVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFGP---ALAECLKDGSTPVRLA 2576
+ L + SS+++ L A K + AN + + + P AL + KD +T VR
Sbjct: 2556 FIKCLQNSSSDIK---LVAEKMIWWANKNHLPALDPQTIKPILKALLDNTKDKNTSVRAY 2612
Query: 2577 AERCAVHAFQLTRG 2590
+++ V+ ++ G
Sbjct: 2613 SDQAIVNLLKMRVG 2626
|
|
| FB|FBgn0039959 CG17514 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2827 (1000.2 bits), Expect = 0., Sum P(4) = 0.
Identities = 617/1538 (40%), Positives = 911/1538 (59%)
Query: 1073 VRMACLNAVKCIP--AVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAEDIWDRYGYDF 1128
VR L ++K + V+ + ++E + W+A HDPE+ E A +W+ +
Sbjct: 1058 VRKVALQSLKIMVNGIVNHIKVDNSLEKVIINRFWVAKHDPEEENRELALFLWNTAKFPL 1117
Query: 1129 GTDYSGLFKALSHSNYNVRXXXXXXXX--XXXDEYPDSIQGSLSTLFSLYIRDIGLGG-- 1184
Y + ++HS ++ DE + LFS+Y + L
Sbjct: 1118 -PGYVDIINDITHSETCIQKSASESLIPLLAGDEVLKKCV--IKKLFSIYKAKLSLLPPV 1174
Query: 1185 -DNVDAG-------WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRM 1236
D D W R+GIA+A + A +L +D+ IM F++S+ L D V M
Sbjct: 1175 LDQFDREIEPAIDQWKPRRGIAIAFSTIAFLLSIEDINDIMNFMVSQGLGDREDVVHKEM 1234
Query: 1237 LNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP 1296
L + I+D HG + L P+FE++L+K A + YD +R+ VVI G+LA+HL KDD
Sbjct: 1235 LATALKIVDLHGNKAIENLLPVFEDFLDK-APKSQSYDNIRQAVVILMGSLARHLEKDDK 1293
Query: 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERR 1356
++ +V +L+ L+TPS+ VQ AVS+CL LM S++DEAP+++ +LL L KS+KYGERR
Sbjct: 1294 RIDPIVKRLITSLSTPSQQVQEAVSNCLPHLMPSVKDEAPSMIKKLLHSLAKSEKYGERR 1353
Query: 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416
GAA+G+AG+VKG GI SLK+ I + L + D+ + + REGAL AFE LC LGRLFEP
Sbjct: 1354 GAAYGIAGIVKGLGILSLKQLDIMSKLTAFIQDKKNYRSREGALFAFEVLCSTLGRLFEP 1413
Query: 1417 YVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
Y++ +LP LL F D +M +LSA GVKLVLPSLL+ L++ +WRTK
Sbjct: 1414 YIVHVLPHLLQCFGDPSQYVRQAADDTAKVVMRKLSAHGVKLVLPSLLEALDEDSWRTKT 1473
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536
+SV+LLGAMA+CAP+QLS CLP IVPKL +VL D+H KVQ +G AL+ +GSVIKNPEI
Sbjct: 1474 ASVELLGAMAFCAPKQLSSCLPSIVPKLIQVLGDSHTKVQESGGEALKVIGSVIKNPEIQ 1533
Query: 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
++VP LL L DP+++T L LL+T F++ +DAPSLAL++P+V R +RS ET+K A
Sbjct: 1534 AIVPVLLDALEDPSNNTSTCLQSLLKTKFIHFIDAPSLALIMPVVQRAFMDRSTETRKMA 1593
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
AQI+GNM SL T+ KD+ PY+ ++P +K L+DP+PEVR+V+ARA+G++++GMGE +F
Sbjct: 1594 AQIIGNMYSL-TDQKDLAPYLPSIIPGLKSSLLDPVPEVRAVSARALGAMVKGMGESSFE 1652
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRD 1714
+L+ WL++ L S++S+V+RSGAAQGLSEV+ LG ++P+II A V+D
Sbjct: 1653 NLLPWLMETLTSESSSVDRSGAAQGLSEVVGGLGVEKMHKLMPEIISTAERVDIAAHVKD 1712
Query: 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774
GY+ +F Y+P + +F Y+ Q++ IL LADE+E VRD AL AG +V YA T++
Sbjct: 1713 GYIMMFIYMPGAFQEEFTPYIGQIINPILKALADESEFVRDTALKAGQRIVNLYAETAVA 1772
Query: 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834
LLLP +E G+F+DNWRIR SSV+LLGDLL++++G SGK E S+D+ TE AII
Sbjct: 1773 LLLPELEKGLFDDNWRIRYSSVQLLGDLLYRISGVSGKMTTETASEDDNFGTEHSHTAII 1832
Query: 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXX 1894
LG ++RN VL+ LYM RSDVSL VRQAALHVWK +V NTP+TL+EI+P L L+
Sbjct: 1833 HFLGDERRNRVLSGLYMGRSDVSLMVRQAALHVWKVVVTNTPRTLREILPTLFGLLLGCL 1892
Query: 1895 XXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954
++RQVA R LG+LVRKLGERVLP IIPIL GL +RQGVCIGLSE+M S
Sbjct: 1893 ASTSYDKRQVAARTLGDLVRKLGERVLPEIIPILENGLNSDHPDQRQGVCIGLSEIMGST 1952
Query: 1955 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014
K +L+F+D L+PT+R ALCD + EVRE+A F +L + G +A+DEI+P +L L D
Sbjct: 1953 SKEMVLTFIDSLVPTVRKALCDPLPEVREAAAKTFESLHSTVGSRALDEILPFMLQGLSD 2012
Query: 2015 DQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL 2072
++ LDGL+Q++S+++ VLP+++P+L P+ N AL L VAG L +L
Sbjct: 2013 ADPFVAENTLDGLRQVMSIKSKVVLPYLVPQLTSPPV---NTKALSILVSVAGEALIKYL 2069
Query: 2073 GTILPALLSAMGDD-DMDVQSLAKEAAETVTL-VIDXXXXXXXXXXXXKGVGDNQASIRR 2130
IL +LL A+ D + E +TV L V D + R+
Sbjct: 2070 PKILSSLLEALSDAYGYPNEPQENEYCQTVILSVTDETGIRTIMDTLLISANSSDLCTRK 2129
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190
S+A L+ F +S + P ++ L+ LL +SD + +WEAL+ V+ + Q
Sbjct: 2130 SAASLLSAFCIHSPGNYYEYIPQLLRCLLKLLVESDKDILQKSWEALNAVIKGMNAAQQI 2189
Query: 2191 SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAA 2250
++ +R A+ + + + +PGFCLPK + PLLP+F + +++G E +E AA
Sbjct: 2190 CHVSDVRQAVRFAASELEGTE------LPGFCLPKGITPLLPVFREAILNGLPEEKENAA 2243
Query: 2251 LGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310
GLGE+I +T+ +SL+ V+ ITGPLIRI+GDRF VK+A+L TLSI++ K G+ LK F
Sbjct: 2244 QGLGEVIFLTNAKSLQPSVVHITGPLIRILGDRFNAAVKAAVLETLSILLHKVGVMLKQF 2303
Query: 2311 LPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSD-AGIREAI 2369
LPQLQTTF+K L D R VR +R +PL ++ + ++ SD + +RE +
Sbjct: 2304 LPQLQTTFLKALHDQNRNVRMKAGKALSELVAIHSRAEPLFNEIHNGIKNSDDSSVRETM 2363
Query: 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXX 2429
L AL+ ++ +G +S +K ++Y L ++ H +D R + LG + + +
Sbjct: 2364 LHALRSIVSRSGDKMSEPIKKQIYVTLLSMIGHHEDATRSAVGGCLGAILKYIASGHVYD 2423
Query: 2430 XXXXXXXXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLR 2489
+HG +V L+ P+ + + L I + ++ EK P+
Sbjct: 2424 LFNNIILTNNTDDLIVKHGHTIVLFVALKECPTEVLVLDLPEKITSYVLINILSEKVPIA 2483
Query: 2490 EASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549
+ +A LL + + + +V L+ ++ +D ++ ++ + L AN S
Sbjct: 2484 SNAVRAATYLLDYYLVNQNEPPIKIVMALSRAMNHSSNDVKQLVAQSCTYLSKNLAANQS 2543
Query: 2550 AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
+I V L P L K+ + V+ +E + +L
Sbjct: 2544 SIDVLKYLV-PMLVNGTKEKNGYVKSNSELALISILRL 2580
|
|
| DICTYBASE|DDB_G0279487 DDB_G0279487 "GCN1-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 2790 (987.2 bits), Expect = 4.7e-302, Sum P(3) = 4.7e-302
Identities = 662/1820 (36%), Positives = 1006/1820 (55%)
Query: 793 EEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTXXXXXXXXXXXXXXS- 851
E+Q+ + ++ K ++A + +K I + KK G+ +
Sbjct: 833 EKQEQLVESRNDRKVKPKTAEEQRDEESRKRI-EEKKKIQSGELEKQEKERQKQLAAQAV 891
Query: 852 IREKVQGVQRNLSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEAL 909
IR+ VQ V L L + MA +NP F + ++ + L++ I +
Sbjct: 892 IRKDVQDVIDRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVF 951
Query: 910 VKLSRCTAMPLCNWALDIATALRLI-VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNG 968
KL C +P + LD + A I + ++ P++ E + L ++I+
Sbjct: 952 EKLICC--VP-SRFKLDRSFARHYIYIINNIYYR----PTLSEI----QILGFIQKILTH 1000
Query: 969 LTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDXXXXXXXXXMISV 1028
+ S L +F + +PII+ L + + + ++++ KH MIS
Sbjct: 1001 IRESIAKEALSGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISS 1060
Query: 1029 LYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVS 1088
L V+ +A + + +L G++ +++ + G+ +K V VR CL A++ IP++
Sbjct: 1061 LIIVVSTNSRLEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIY 1120
Query: 1089 TRSLPENIEVSTSLWIAVHDPEKSVAEA-AEDIWDRYGYDFGTDYSGLF-KALSHSNYNV 1146
+ S + SLW A D + A AE IW + T F K LS S +NV
Sbjct: 1121 SPSFVWEDKYIGSLWFARFDNHDANTSALAEKIW--LATNQPTQLPEDFMKLLSDSTFNV 1178
Query: 1147 RXXXXXXXXXXXDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
E + I + LF +Y ++ R +A AL
Sbjct: 1179 NSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALS 1238
Query: 1203 SAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
+ ++ + L + T +I R L D +V ++ G+ II++ G L FE
Sbjct: 1239 GLGNAIVEPEVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEA 1298
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
+L + + + D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S
Sbjct: 1299 FLARPDNGTGEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGIS 1358
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380
C++ L+ S + + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I
Sbjct: 1359 KCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSIL 1418
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXX 1440
TL+ + D+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D
Sbjct: 1419 DTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDAT 1478
Query: 1441 XXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+MSQLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP I
Sbjct: 1479 ADTAKAIMSQLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTI 1538
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 1560
VPKLT VL DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ L
Sbjct: 1539 VPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENL 1598
Query: 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
L T +V+T+D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L
Sbjct: 1599 LSTNYVHTIDPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNIL 1657
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+P +K VL+DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQ
Sbjct: 1658 MPVMKTVLLDPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQ 1717
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
GLSEVLA+L F ++ +++ + R VR+G L++F + P SLG F YL +VLP
Sbjct: 1718 GLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLP 1777
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+L GLAD+++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L G
Sbjct: 1778 QVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFG 1837
Query: 1801 DLLFKVAGTSGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
DLLFK+AGT+ + + S DD+ + G I ++LG+++ +L++LYM+R D
Sbjct: 1838 DLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFD 1897
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRK 1915
+ SVRQ L +WK IV+NTPKTL+EI+P L+ +I E+RQ++ + LG++V K
Sbjct: 1898 NNSSVRQKVLLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSK 1957
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
L +R+LP I+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALC
Sbjct: 1958 LSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALC 2016
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA---LDGLKQILSVR 2032
D +++VRE+A AF L+ + G +A +EI+P L+ L++ D A LDGL+Q++ VR
Sbjct: 2017 DPLIDVREAAAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVR 2076
Query: 2033 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD-MDVQ 2091
++ VLP ++PKL+ P+S N AL +LA AG GL HL TI+P+L+ + + + +
Sbjct: 2077 SSIVLPVLIPKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNA 2136
Query: 2092 SLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151
KEAA ++ ID + +IR + LIG FY + + V E
Sbjct: 2137 KEIKEAAVSICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNTM--VTEY 2194
Query: 2152 PN-MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210
P ++ +L+ L +D D+ AA AL + S+ K+ +Y+ V + I ++ +
Sbjct: 2195 PEELLLSLLSLFNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEE 2253
Query: 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI 2270
IPGFCLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+
Sbjct: 2254 VS----TIPGFCLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVM 2309
Query: 2271 PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVR 2330
ITGPLI +IGD+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR
Sbjct: 2310 QITGPLILVIGDKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVR 2369
Query: 2331 XXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390
+ VD LV L++ + +D+ +E+ L AL+ + + K V A
Sbjct: 2370 TNAASALGLLMTLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLD 2428
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXPSWAARHGSV 2450
+ + + D +Y D +R A +G S+C S +R+G
Sbjct: 2429 KAIATIVDFLYQPSDDLRSMVAQTIGASSKCFTSLTELNQFIKTNLISPSQSVLSRYGKS 2488
Query: 2451 LVFATFLRHNPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508
L + + + S SP +I+ +++ +DEK P+RE+S +L+ + P
Sbjct: 2489 LALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----ASP 2544
Query: 2509 ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLK 2567
T D++ S+ + D SS V AL+ +K K+N ++ + P + +
Sbjct: 2545 L--TYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLKE 2602
Query: 2568 DGSTPVRLAAERCAVHAFQL 2587
+ P++LAAER VH+ Q+
Sbjct: 2603 RTNLPLKLAAERTLVHSLQI 2622
|
|
| UNIPROTKB|F1RJK5 GCN1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2524 (893.6 bits), Expect = 2.5e-262, P = 2.5e-262
Identities = 532/1248 (42%), Positives = 771/1248 (61%)
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+L
Sbjct: 2 ERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKL 61
Query: 1414 FEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYV+ +LP LL+ F D +MS LSA GVKLVLPSLL LE+++WR
Sbjct: 62 FEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWR 121
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NP
Sbjct: 122 TKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNP 181
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI ++ P LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+
Sbjct: 182 EILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTR 241
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE
Sbjct: 242 KMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGES 300
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS-- 1711
F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S +
Sbjct: 301 CFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPH 360
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VRDGY+ +F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T
Sbjct: 361 VRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAET 420
Query: 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831
++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +
Sbjct: 421 AIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNK 480
Query: 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891
AII LG D+RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+
Sbjct: 481 AIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLL 540
Query: 1892 XXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951
++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M
Sbjct: 541 GFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIM 600
Query: 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
S + +L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL
Sbjct: 601 KSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQ 660
Query: 2012 LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFH 2071
L+D++ S+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L H
Sbjct: 661 LDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRH 717
Query: 2072 LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIR 2129
LG ILPA++ A+ + + L + V L + D + + +R
Sbjct: 718 LGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMR 777
Query: 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189
+++A ++ + SK +++S LI L +DS + +W+AL+ + + Q
Sbjct: 778 QAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQ 837
Query: 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQ 2248
+ I+ + I ++ + + +PGFCLPK + +LP+ +G+++GS E +E+
Sbjct: 838 LALIEELHKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEE 891
Query: 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALK
Sbjct: 892 AAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALK 951
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIRE 2367
PFLPQLQTTF K LQDS R VR +VDPL +LL+ ++V D G+R+
Sbjct: 952 PFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRVMEDPGVRD 1011
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXX 2427
+L AL+ V++ AG V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 1012 TMLQALRFVIQGAGAKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEEL 1071
Query: 2428 XXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF 2486
W RHG L + + PS + + D + S+ +
Sbjct: 1072 SAVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCTGKYSSEVQDMILSNAFALQI 1131
Query: 2487 PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKA 2546
P+ + + +G L+ + +++G + L + L + SS++R L A K + A
Sbjct: 1132 PIAVSGVRGMGFLMKYHVETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWA 1186
Query: 2547 NPSAI-MVHVALFGP---ALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
N + + P AL + KD +T VR +++ V+ ++ +G
Sbjct: 1187 NKDPLPALDPQAIKPILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQG 1234
|
|
| POMBASE|SPAC18G6.05c SPAC18G6.05c "translation elongation regulator Gcn1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 2374 (840.7 bits), Expect = 1.2e-261, Sum P(4) = 1.2e-261
Identities = 532/1414 (37%), Positives = 845/1414 (59%)
Query: 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALAD-----TNAD--VRGRMLNAG 1240
D G + R+ +A++ + L + L + FL++ + A+ T+A V +ML AG
Sbjct: 1204 DLGRIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSKMLEAG 1263
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ I + G V L +FE LN + + D +RE V+ G +A+HL +DP++
Sbjct: 1264 KLAIFQSGAHQVEALMELFEQKLNVDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAV 1323
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
V+D LL VL+TPSE+VQ AV+ CL PL++ ++ L ++LM S +++GAA+
Sbjct: 1324 VMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSLADQKGAAY 1383
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG+GI + + + I +L E +++R +A R+ AL A E LG FEPY+
Sbjct: 1384 GLAGLVKGYGIKAFQDFNILDSLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPD 1443
Query: 1421 MLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LPLLL +F D +MSQLSA GVKL+LP+LL GL + WR+K++SV+
Sbjct: 1444 LLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVE 1503
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
+LG M+Y AP+QLS LP I+PKL+EVLTD+H +V++ +L + G VI NPEI +LVP
Sbjct: 1504 ILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQTLVP 1563
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
TLL L+D +T +L+ LL+T+FV+ +D PSLAL++PI+ GLRER+A TK+++A+I
Sbjct: 1564 TLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKRQSAKIF 1623
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
G M SL TEP+++ Y+ L+P +++VL+DP+P+ R+ AA+A+GSLI +GE+ FP L+
Sbjct: 1624 GLMASL-TEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEKLGEKKFPTLIP 1682
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720
L + L+S+ S V+R GAAQGLSE+LA LG E +LP+I++N S +R+ +++L
Sbjct: 1683 ELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNTSSPVPHIRESFISLL 1742
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAV 1780
YLP + G +FQ YL + +P IL GLAD++E V+ A+L A ++V +YAT S+ LLLP +
Sbjct: 1743 IYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPEL 1802
Query: 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840
E G+F++ WRIR SSV+L+GDL+FK+AG + KAL E ++EG ++ +A+++++G++
Sbjct: 1803 EKGLFDNAWRIRLSSVQLVGDLVFKLAGINRKALQED-EEEEGTHSDVSRKALLDIIGQE 1861
Query: 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXE 1900
+ + +L+ LY+VR D++ VR A+ +WK IV NTP+T++EI+P L + ++ +
Sbjct: 1862 RHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVSNLNSSSND 1921
Query: 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
RR + ++LG+L++K G VLP ++P+L +GL+ ++ R GVCI L E++ SA QL
Sbjct: 1922 RRTMCVKSLGDLLKKAGFDVLPQLLPVLKQGLESANSGDRIGVCIALEELINSATPEQLE 1981
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
+ D+ + +R AL D LEVRE+A AF +L G +A+D+++P LL LE + S+
Sbjct: 1982 IYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQ 2041
Query: 2021 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 2080
AL L++I+S R++ + P ++P L+ P+SAFNA AL +LA+VAG LN L +IL AL+
Sbjct: 2042 ALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALSSLAQVAGVTLNKRLPSILNALM 2101
Query: 2081 -SAMGDDDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRR--SSAYLIG 2137
S++ D+ +L A + V L + +++ +R ++ +++
Sbjct: 2102 ESSLASTGDDLVAL-NGAIDKVNLSVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHML- 2159
Query: 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197
F++N KL + + I L D V AA A + +V+++ K+ S + +
Sbjct: 2160 VFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSI-- 2217
Query: 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257
A + RD +G + +P F + + + +LPIFL GL+ G+ + REQ+ALG+ +++
Sbjct: 2218 -AYHSLRDVG---SQG--VNLPAFEVAQGVNSILPIFLYGLMHGTMDQREQSALGIADIV 2271
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
T L+ FV ITGPLIRIIG+RFP +VK AIL TL+II+ K L+PFLPQLQ T
Sbjct: 2272 LKTEPSKLRPFVTQITGPLIRIIGERFPVEVKCAILYTLNIILSKISTFLRPFLPQLQRT 2331
Query: 2318 FIKCLQD-STRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376
F KCL D S+ +R TR+ P++ +L+S + DAG+R+A+L AL V
Sbjct: 2332 FAKCLGDPSSEVIRSRAATALGTLITLQTRLAPIITELVSGARTPDAGVRKAMLNALFAV 2391
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXX 2436
+ +G++++ A + +L ++ +H+ V A + G + +
Sbjct: 2392 VSKSGQNMNEASAEAIEQLLDEISAESSEHM-VICAKLYGALFSHLPDAQAKQLLESKVL 2450
Query: 2437 XXXXPSWAARHGSVLVFATFLRHNPSAI---SMSPLFLSILDRLKSSLKDEKFPLREAST 2493
S SVL+ ++ I +S + SI+ +SL+ E + E
Sbjct: 2451 SLEIQS----EFSVLILNAAVKFGSQKIIELKLSDIVCSIIST--ASLQKE-VTIAENGI 2503
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
ALG+ LL I N +V+ L + A S + RR AL ++ V+K N S I
Sbjct: 2504 LALGKALLADIPQSFGNAKNLVEALKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKP 2563
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
H+++ PA+ C++ PV+LAAE + FQL
Sbjct: 2564 HISILAPAIFGCVRAIVIPVKLAAEAAFLALFQL 2597
|
|
| UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 2384 (844.3 bits), Expect = 4.3e-259, Sum P(2) = 4.3e-259
Identities = 602/1774 (33%), Positives = 944/1774 (53%)
Query: 851 SIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQL-PSLVKFVDPLLQSP--IVGDVAYE 907
+IRE+V+GV + + + +A P A + P++ +D + I GD A
Sbjct: 858 AIRERVRGVAAKVMRGVGVIKSLATGPPTDATLWMGPAVNALLDAVDAGACLITGDAAPT 917
Query: 908 ALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVN 967
A + + + L ++ I A T H +L+P E K + L R++
Sbjct: 918 AYLACADRVSSRLGSFRQFIGVA-----TLRAH-GVELLP---ENLKAEPFEDLVTRVMY 968
Query: 968 GLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD-----VL--QMLYKHMDXXXXX 1020
L + + P V S ++ P+ IL +D VL ++L H D
Sbjct: 969 RLRFAGEQRPFDVVSVNYMLPLALLILNKGGFGATAEDRDTHLVLATELLSFHTDTASSE 1028
Query: 1021 XX--XXMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN----EVASALHGVYTKDVHVR 1074
M+ L + V + I +++ + PN E+ G VR
Sbjct: 1029 ALPRAQMLETLISSMQVYNQHYKIIRDCFSDMVRCVAPNISEKEIGVVARGAIVPQTSVR 1088
Query: 1075 MACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS- 1133
L ++ +S +E S +WIA H+ + E A++IW+ G+ D
Sbjct: 1089 TTVLQSISADVDMS------ELEFSEEIWIAYHEDSEENVELAKEIWEESGFQTSKDVPV 1142
Query: 1134 GLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSLSTLFSLYIR----------DIGLG 1183
+ L + +R +P+++ L L Y+ + G+
Sbjct: 1143 KMLPYLESKDGQLRKAASRALAEACSNHPETVNLILEKLRLAYVEFAKPRVPELDEFGMP 1202
Query: 1184 GD-NVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRA-LADTNADVRGRMLNAGI 1241
++ W R GIA + A L+ + L FLI + L D N VR ML A
Sbjct: 1203 KKMDLSDPWEARHGIASSFKELAPYLKREHLDSFFAFLIEQGPLGDQNGSVRAEMLEAAN 1262
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
I+ HG+ V L FE L D V E V+I GALA+HL D K+ V
Sbjct: 1263 KAIEIHGKGMVDKLMKTFETTLEAPDKGSAAADRVNEAVIIMYGALARHLKAGDAKIPVV 1322
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFG 1361
+++L+ L+TPSEAVQ A++ CL PL+++ +++ +++ L+ S Y +RGAA+G
Sbjct: 1323 IERLIATLSTPSEAVQYAIAECLPPLVKACGNKSSKYFDEIMETLLTSKNYAVQRGAAYG 1382
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421
LAG+V G GI+SL+++ I + L L ++ A +RE ALLA+E L LGRLFEPYVI +
Sbjct: 1383 LAGLVLGRGIASLREFRIMSNLHSALENKKEANQRESALLAYELLATILGRLFEPYVILI 1442
Query: 1422 LPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
+P LL F D ++LS+ GVK +LP+LL+GL+D WR+K+ + L
Sbjct: 1443 VPQLLAGFGDSNANVRDAALASAKACFARLSSYGVKQILPTLLRGLDDDQWRSKKGACDL 1502
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
LGAMAY PQQL+ LP+I+P LT VL D+H +V+S +L++ G VI NPE+ LV
Sbjct: 1503 LGAMAYLDPQQLALSLPEIIPPLTAVLNDSHKEVRSGANKSLKRFGEVISNPEVKGLVDI 1562
Query: 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601
LL L+DP +T +LD L++ FV+ +DAPSLAL+ I+ RGL +RS TK+KA+Q++G
Sbjct: 1563 LLKALSDPTKYTDEALDSLIKVQFVHYLDAPSLALVSRILQRGLADRS-NTKRKASQVIG 1621
Query: 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661
++ L TE KD++ ++ +L+ +K +VDP+P R+ A+RA+GSL+ +GEE PDL+
Sbjct: 1622 SLAHL-TERKDLVSHLPVLVAGLKIAVVDPVPTTRATASRALGSLMEKLGEEALPDLIPG 1680
Query: 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721
L+ LKSD +R G+AQ LSEVLA LGT E LP I++N + +VR+G+++LF
Sbjct: 1681 LMQTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETLPTILQNVESSKPAVREGFMSLFI 1740
Query: 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781
+LP G F NYL +++P IL GLAD+ E++R+ AL AG +LV+++A ++ LLLP +E
Sbjct: 1741 FLPVCFGNSFANYLGRIIPPILSGLADDIEAIRETALKAGRLLVKNFAVRAVDLLLPELE 1800
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
G+ +D++RIR SSVEL+GDLLF + G SGK E G +DE + G ++ E LG +K
Sbjct: 1801 RGLADDSYRIRLSSVELVGDLLFNLTGISGKT--EDGDEDEEEKVKEAGNSLREALGDEK 1858
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXER 1901
RN++L+ALY+ R D + SVR AA+ VWK +V++ PKTLKE++P L +I E
Sbjct: 1859 RNKILSALYICRCDTATSVRAAAVAVWKALVSS-PKTLKELVPTLTQLIIRRLGSTNMEH 1917
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGKSQLL 1960
+ +A ALGEL+RK G+ VL S++P L GL+ + RQG+C+ L E+++SA + L
Sbjct: 1918 KVIASNALGELIRKAGDNVLSSLLPTLEEGLQTSTDVDARQGICLALKELISSASEEALE 1977
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
LI +RTAL DS EVRE+A AF +L + G +A+D+++P LL+ L + ++
Sbjct: 1978 EHEKILISVVRTALTDSDTEVREAAAEAFDSLQQILGKRAVDQVLPFLLNLLRSEDEAEN 2037
Query: 2021 ALDGLKQILS--VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
AL L +L+ R+ +LP+++P L+ P+SAFNA AL +L+ VAG +N L I+ +
Sbjct: 2038 ALSALLTLLTETTRSNIILPNLIPTLIAPPISAFNAKALASLSRVAGAAMNRRLPNIVNS 2097
Query: 2079 LLSAMGD-DDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSA-YLI 2136
L+ + + D ++ + TV ID + ++ +R++ +
Sbjct: 2098 LMDNLVNCKDDSLREDLDASFHTVISSIDEYDGLNTVMNVLLQLTKHEDHRKRAATGKQL 2157
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
F+ + + ++I +L++ DSD V +AW ALS + KE + +
Sbjct: 2158 ARFFAATDVDYSRYNQDIIRSLLISFDDSDMEVVKSAWSALSEFTKKLRKEEMEALV--- 2214
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 2256
+ST + + G + GF LPK + +LPIFLQGL++G+ + + Q+AL + ++
Sbjct: 2215 ---VSTRQTLLQVGVAGNNL--KGFELPKGVSAILPIFLQGLMNGTPDQKIQSALAISDI 2269
Query: 2257 IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316
+ TSE SLK FV+ ITGPLIR++ +R +VKSAIL TL+ ++ K ALKPFLPQLQ
Sbjct: 2270 VARTSEASLKPFVVQITGPLIRVVSERST-EVKSAILLTLNNLLEKMPTALKPFLPQLQR 2328
Query: 2317 TFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375
TF K L D+T +R RVDPL+ +L++ + +D G+R A+L AL
Sbjct: 2329 TFAKSLADTTSEQLRSRAAKALGTLIKYTPRVDPLIAELVTGSKTTDPGVRTAMLKALFE 2388
Query: 2376 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXX 2435
V+ AG ++ + V ++ DD + V+ A +LG + + +
Sbjct: 2389 VISKAGANMGEPSRAAVLGLIDMETDEKDDAMTVTNAKLLGALVKNVSGDAAHNLIKSRV 2448
Query: 2436 XXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
P+ + SVL L P+AI P + + L + + + + S A
Sbjct: 2449 LTPT-PTTS----SVLGLNAVLLDAPAAIMEGPFAEELPELLVQGISSKIAMIADNSILA 2503
Query: 2496 LGRLLLHQIQSGP-ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
G+ LL++ QS P +T V + LA+ V + ++ RR +L +++V++ N H
Sbjct: 2504 AGKYLLNE-QSKPFEHTKAVFEALANTVGP--GNPTDSRRLSLVVVRTVSRVNMDLARPH 2560
Query: 2555 VA-LFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
+ L GP A ++D PV+LAAE V F +
Sbjct: 2561 LPQLAGPVFAS-VRDPVIPVKLAAEAAFVSLFNV 2593
|
|
| ASPGD|ASPL0000003073 AN10734 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 2289 (810.8 bits), Expect = 1.0e-256, Sum P(3) = 1.0e-256
Identities = 533/1388 (38%), Positives = 819/1388 (59%)
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
+ NEV L G D VR A L A+ ++ E+I W+ HD +
Sbjct: 1066 INENEVNVLLKGTIVSDPSVRSAVLQAIDAEIDLTDMDFSEHI------WLECHDHVEEN 1119
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSL-ST 1171
AE AE IW+ G + T Y L L + N+R E S+ G + S
Sbjct: 1120 AEIAESIWEENGLEIDETAYGKLIPYLDSRDSNLRGAAARAIAHAI-ESNHSVFGDIISQ 1178
Query: 1172 LFSLYIRDI----------GLGG--DNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTF 1219
L S Y +I G+ D D W R GIALA + ++ + + F
Sbjct: 1179 LQSKYEFEIRPKEPEKDKYGMPKKVDTTDH-WESRSGIALAFGAMQNLFEGDQIVSFLRF 1237
Query: 1220 LISRA-LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LI R L D ++ VR +M ++G +I G++ V L + E L E DL+ E
Sbjct: 1238 LIERGPLIDRSSVVRDQMADSGKGVIAARGQEKVEELMKLLETTLETSDKGSETSDLLNE 1297
Query: 1279 GVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
VV+ G+LA+HL DDP++ V+ +LL L TPSE+VQ AVS CL PL++ ++
Sbjct: 1298 AVVVLYGSLAQHLKSDDPRLQTVIKRLLATLPTPSESVQSAVSDCLPPLIRLAGRQSGKY 1357
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+LDQ+++S Y +RGAA+GLAG+VKG GI +L+++ + L++ ++ +R G
Sbjct: 1358 AQEMLDQILQSKDYATQRGAAYGLAGIVKGRGIVTLREFRVMPHLQDAAENKKEPHKRLG 1417
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKL 1458
AL+A+E LGR +EPYVIQ++P LL +F D S LS+ GVK
Sbjct: 1418 ALMAYELFATILGRTYEPYVIQVVPQLLTSFGDPNADVREACLYTAKACFSNLSSYGVKK 1477
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP+LL+GL+D WR+++ + LLGAMAY PQQL+ LP+I+P LT VL DTH +V++A
Sbjct: 1478 ILPTLLEGLDDTQWRSQKGACDLLGAMAYLDPQQLAVSLPEIIPPLTVVLNDTHKEVRNA 1537
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+LQ+ G VI NPEI SLV LL L+DP T +LD L++ +FV+ +DAPSLAL+V
Sbjct: 1538 ANRSLQRFGEVISNPEIKSLVNVLLKALSDPTKFTDEALDALIKVSFVHYLDAPSLALVV 1597
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
I+ RGL +RSA TK+K+AQI+G++ L TE KD+I ++ +++ + +VDP+P R+
Sbjct: 1598 RILERGLGDRSA-TKRKSAQIIGSLAHL-TERKDLITHLPIIVSGLNLAIVDPVPTTRAT 1655
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698
A++A+GSLI +GE+ PDL+ L+ LKSD +R G+AQ LSEVLA LGT E L
Sbjct: 1656 ASKALGSLIEKLGEDALPDLIPNLMSTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETL 1715
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
P I++N S +A++R+G++TLF YLP G F YL +++P IL GLAD+ +++R+ +L
Sbjct: 1716 PTILQNVSSSKATIREGFMTLFIYLPACFGNSFAPYLGRIIPPILAGLADDVDTIRETSL 1775
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818
AG +LV+++++ ++ LLLP +E G+ +D++RIR SSVEL+GDLLF + G + K E
Sbjct: 1776 RAGRLLVKNFSSKAIDLLLPELERGLADDSYRIRLSSVELVGDLLFSITGITAKT--EAE 1833
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878
+DE A+ +A G++++EVLG ++R++VL+AL++ R D S V+ AA+ VWK++VA+ P+T
Sbjct: 1834 EEDEEAA-QA-GQSLLEVLGEERRDKVLSALFICRCDTSGLVKTAAMGVWKSLVAS-PRT 1890
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSA 1937
LKE++P L +I E++ +A ALG+L++K GE VL +++P L GL+ P
Sbjct: 1891 LKEMVPTLSQLIIRRLGSSNMEQKVIASNALGDLIKKAGESVLATLLPTLEDGLQTSPDV 1950
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+QG+CI L E++AS+ L + LI +R AL D+ +VRE+A AF L + G
Sbjct: 1951 DVKQGICIALKEIIASSSPDALEDYEKILISIVRVALVDNDDDVREAAAEAFDALQQILG 2010
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA--VLPHILPKLVHLPLSAFNAH 2055
+A+D+++P LL L +D+ ++ AL L +L+ +T A +LP+++P L+ P+S FNA
Sbjct: 2011 KKAVDQVLPHLLLLLRNDEDAEQALSALLTLLTEQTRANIILPNLIPTLLTSPISTFNAK 2070
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDXXXXXXX 2113
AL +LAEVAG + L TIL L+ + DD + L +A T+ + +D
Sbjct: 2071 ALASLAEVAGSAMARRLPTILNTLMDNIITCKDDEQRKEL-DDAFSTILVSVDEFDGLNV 2129
Query: 2114 XXXXXKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAA 2172
+ + RR+ +A + F+ ++++ ++I L++ D D V A
Sbjct: 2130 MMSVMLALIKHDDERRRTRAADHLRRFFSDAEIDFSRYHQDLIRVLLISFDDPDKDVVKA 2189
Query: 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLL 2231
AW ALS + + + KE ++V+ ++ T ++ K G P +PGF LPK + +L
Sbjct: 2190 AWGALSGLTSRLRKEE----MEVL--SVPT---RQILKGVGVPGADLPGFSLPKGITAIL 2240
Query: 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
PIFLQGL++GS E R QAAL +G+LI+ T+ SLK FV ITGPLIR++ +R +K A
Sbjct: 2241 PIFLQGLLNGSVEQRTQAALAIGDLIDRTAADSLKLFVTQITGPLIRVVSERSV-DLKCA 2299
Query: 2292 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPL 2350
I TL+ +++K +A+KPFLPQLQ TF + L D T T+R RVDPL
Sbjct: 2300 IFFTLNKLLQKIPLAVKPFLPQLQRTFARGLADQTSETLRNRAAKGLGILITLTPRVDPL 2359
Query: 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 2410
+ +L++ + +D G+R A++ AL+ V+ AG ++S A K + +++ D D V ++
Sbjct: 2360 IAELITGTKTADVGVRNAMMKALQEVVGKAGANMSEASKNSLLALIDDDASDQTDAVAIT 2419
Query: 2411 AASILGIM 2418
A +LG +
Sbjct: 2420 NAKLLGAL 2427
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54WR2 | GCN1L_DICDI | No assigned EC number | 0.3309 | 0.8679 | 0.8500 | yes | no |
| Q92616 | GCN1L_HUMAN | No assigned EC number | 0.3389 | 0.9636 | 0.9423 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00026717001 | SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (2597 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00034459001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (900 aa) | • | • | 0.503 | ||||||
 | GSVIVG00019376001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa) | • | • | 0.482 | ||||||
 | GSVIVG00001918001 | SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa) | • | • | 0.476 | ||||||
 | GSVIVG00025547001 | RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1518 aa) | • | 0.412 | |||||||
 | GSVIVG00006684001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (716 aa) | • | • | • | 0.410 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2612 | |||
| pfam12074 | 329 | pfam12074, DUF3554, Domain of unknown function (DU | 2e-29 | |
| COG5181 | 975 | COG5181, HSH155, U2 snRNP spliceosome subunit [RNA | 2e-08 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 2e-05 | |
| COG1413 | 335 | COG1413, COG1413, FOG: HEAT repeat [Energy product | 4e-05 | |
| pfam01602 | 522 | pfam01602, Adaptin_N, Adaptin N terminal region | 2e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.001 |
| >gnl|CDD|221409 pfam12074, DUF3554, Domain of unknown function (DUF3554) | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-29
Identities = 82/354 (23%), Positives = 132/354 (37%), Gaps = 40/354 (11%)
Query: 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKR 405
P Q+ + NAL L S+S +I LL E NE A+LSA
Sbjct: 1 PDQKALIANALSALPVF-------SVSPSIVDGLLPLLSKESNEAALNALLSAFGKHLFF 53
Query: 406 SADIIQSDLLSFFASGLKEKEA-LRRGHLRCLRVICTNTDAVLQ-VSSLLGPLIQLVKTG 463
+ + D++ GL EK+ LR+ L L N A L + L L++++K
Sbjct: 54 LTEEVPDDVVDAIKKGLAEKKPPLRKIWLLSLGEALWNNSASLPLIEDFLPKLLKILKEA 113
Query: 464 FTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPS-LVPTAMIS 517
+ + L G Y L + + K WSLV +PS L+ S
Sbjct: 114 ASNPLPAAQNGTLSGAYVLLSLTPSLSK--------KLIKFWSLVLDPKPSFLLSPKFYS 165
Query: 518 KLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHDATR 575
KLS +D + L L H + E Q + P W++RK A +
Sbjct: 166 KLSDEDLCWVLRALEALFSGHPSELAEDKIA--WGQAWIYVLLSPSLPWEVRKRALQLLK 223
Query: 576 KIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
K+++S P L+ +++ N+L K S + + + S +
Sbjct: 224 KLLSSNPGVLANSIISALWNWLEAHELG---PKESSIESTSLKFLTPVFSALSLALSEKD 280
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVS 688
A +++ ++ +HHP I W L CLR+ G + E+V
Sbjct: 281 SADISIGLEKLLV-SLLVLAHHPLIPIVS-----WIGL--CLRS-GLDPGELVR 325
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This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with pfam02985. Length = 329 |
| >gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-08
Identities = 128/767 (16%), Positives = 263/767 (34%), Gaps = 124/767 (16%)
Query: 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDP 1935
+++P+LM S ER V + L+ L + +P I+ ++ L D
Sbjct: 205 FNKVLPMLM-----SRELEDQERHLVVK-LIDRLLYGLDDLKVPYVHKILVVVGPLLIDE 258
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
RR C+G E++ + L F + ++R + VR G A + +
Sbjct: 259 DLKRR---CMG-REIILNLVYRCGLGFS---VSSMRPDITSKDEYVRNVTGRAVGVVADA 311
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH------ILPKLV---H 2046
G++ + + L + + + T + +QI + + L H + KL+
Sbjct: 312 LGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS 371
Query: 2047 LPLSAFNAHALGALAEVAGP---------------GLNFHLGTILPALLSAMGD--DDMD 2089
+ A+AL LAE+ GP G + H G L + L AMG M
Sbjct: 372 RFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS 431
Query: 2090 VQSLAKEAAETVTLVI------DEEG-------------VESLVSELL-----------K 2119
+ + E + +V DEE V + L
Sbjct: 432 PEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF 491
Query: 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
A RRS ++ L + P + ++ SD +SR
Sbjct: 492 WR-RRSAGDRRSYKQVV---LTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSR 547
Query: 2180 VVASVPK-EVQPSYIKVIRDAI------STSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232
+ + + + + + D+I + ++ F L ++
Sbjct: 548 IFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVS 607
Query: 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 2292
L+ L S ++R +AA +G L +V + + + L +G+ +P + S +
Sbjct: 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSIL 667
Query: 2293 LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDP-- 2349
+ SI +++P + + + L++ + V ++ +G + S +
Sbjct: 668 KAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE 727
Query: 2350 ---LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ +L+ SL+ + IR + + G V +L + + +
Sbjct: 728 WMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNLKVQERQ 780
Query: 2407 VRVSAASILGIMSQ-CMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR--HNPS- 2462
RV + + I+++ C +L L++ +P ++G + S
Sbjct: 781 QRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836
Query: 2463 --AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV---VDI 2517
S++PL L+ +L D R+ + ++ + T + +
Sbjct: 837 DYVYSITPL-------LEDALTD-----RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHL 884
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKA-NPSAIMVHV--ALFGPA 2561
L + + + S V + ++S A A+M +V LF P+
Sbjct: 885 LNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPS 931
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Length = 975 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340
W+V+ A L + G L+P +P+L + L+D VR +AA ALG++
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-05
Identities = 62/279 (22%), Positives = 102/279 (36%), Gaps = 50/279 (17%)
Query: 2276 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAAL 2335
L++++ D V+ + L G + + +P L + L D VR +AA
Sbjct: 48 LLKLLEDE-DLLVRLSAAVAL------GELGSEEAVPLL----RELLSDEDPRVRDAAAD 96
Query: 2336 ALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV-LKHAGKSVSSAVKIRVYS 2394
ALG+L V PLV L + + G+R A AL + + A + A++
Sbjct: 97 ALGEL-GDPEAVPPLVELLENDE---NEGVRAAAARALGKLGDERALDPLLEALQDEDSG 152
Query: 2395 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS--PSWAARHGSVLV 2452
+ VR +AA LG + D + LL ELL + AA S L
Sbjct: 153 SAAAALDAALLDVRAAAAEALG----ELGDPEAIPLLIELLEDEDADVRRAAA---SALG 205
Query: 2453 FATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTT 2512
D L +L DE +R+A+ ALG + +
Sbjct: 206 QLGSENVE------------AADLLVKALSDESLEVRKAALLALGEIGDEE--------- 244
Query: 2513 VVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI 2551
+ ++ AL D+ + A +AL ++ A +
Sbjct: 245 ----AVDALAKALEDEDVILALLAAAALGALDLAEAALP 279
|
Length = 335 |
| >gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-04
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-ASI 2128
HL I+ L + DDD+ + A + + ++DE V+ +V ELLK V +
Sbjct: 301 QHLDLIIFCLKT---DDDISI---RLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEF 354
Query: 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
+ IG + +A I L+ LLS + S V E + ++ P
Sbjct: 355 KIKLVKAIGRLAEKF----PTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYP 407
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This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSS 2530
L L S L ++ + AL L N VV+ L ++V L +
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAG----NNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 2531 EVRRRALSALKSVAKANPS-AIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
EV + AL AL+++A ++V A P L L + ++ A
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2612 | |||
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.96 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.95 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.95 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.93 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.93 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.92 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.9 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.89 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.87 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.87 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.81 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.64 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.58 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.46 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.43 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.42 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.38 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.26 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.24 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.21 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.19 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.19 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.15 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.99 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.96 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.9 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.84 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.84 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.84 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.83 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.83 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.8 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.79 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.75 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.69 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.69 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.67 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.66 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.63 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.63 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.61 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.6 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.59 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.58 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.57 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.57 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.56 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.52 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.5 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 98.5 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.49 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 98.48 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.43 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.4 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.35 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.35 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.33 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.33 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.3 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.25 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.24 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.23 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 98.21 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.21 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 98.17 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.17 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.16 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.09 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.08 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.04 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.03 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.98 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.98 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.87 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.86 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.86 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.82 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.79 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.79 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.79 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.69 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.67 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.67 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.63 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.6 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.56 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.51 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.48 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.45 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.41 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.35 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 97.34 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.31 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.3 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.21 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.15 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.14 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 97.11 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.09 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.07 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.07 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 97.04 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.03 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.99 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.96 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.9 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.84 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.83 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.81 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.81 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.74 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.7 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.62 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.6 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.53 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.43 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.36 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.34 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 96.31 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.19 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.09 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.05 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.03 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.89 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.86 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.82 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.81 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.61 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.61 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.47 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.46 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.4 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.37 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.35 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 95.33 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.3 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.29 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.23 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.2 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.18 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.16 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 95.09 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.0 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 94.9 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 94.83 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.82 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 94.81 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.74 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 94.63 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 94.63 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 94.62 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 94.52 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.26 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.06 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 94.05 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 93.99 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 93.9 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 93.53 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 93.48 | |
| COG5234 | 993 | CIN1 Beta-tubulin folding cofactor D [Posttranslat | 93.08 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 93.07 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 93.07 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 93.04 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 93.03 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 92.73 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 92.63 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 92.6 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 92.58 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 92.31 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 92.31 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 92.07 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 91.85 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 91.68 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 91.51 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 91.45 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 91.36 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 91.28 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 90.92 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 90.57 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 90.49 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 90.16 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 89.97 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 89.47 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 89.46 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 89.44 | |
| KOG1837 | 1621 | consensus Uncharacterized conserved protein [Funct | 89.26 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 89.1 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 88.99 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 88.96 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 88.95 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 88.83 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 88.61 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 88.55 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.44 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 87.87 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 87.84 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 87.67 | |
| KOG1837 | 1621 | consensus Uncharacterized conserved protein [Funct | 87.21 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 87.04 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 86.56 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 86.35 | |
| PF12726 | 727 | SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y | 85.74 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 85.7 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 85.65 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 85.34 | |
| KOG3961 | 262 | consensus Uncharacterized conserved protein [Funct | 85.32 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 84.45 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 84.26 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 83.47 | |
| KOG2213 | 460 | consensus Apoptosis inhibitor 5/fibroblast growth | 83.35 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 83.32 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 82.97 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 82.9 | |
| KOG2213 | 460 | consensus Apoptosis inhibitor 5/fibroblast growth | 82.65 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 82.21 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 82.21 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 82.02 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 81.91 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 81.54 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 80.74 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 80.72 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 80.6 |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=539.07 Aligned_cols=561 Identities=50% Similarity=0.755 Sum_probs=523.6
Q ss_pred HHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHH
Q 000051 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2612)
Q Consensus 1201 l~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~ 1280 (2612)
++.+...+...+...++.|++..| .|+...||..|++++..++..||.+.+..++|.|++.++... .+.+|+++
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-----~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-----NDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch-----hHHHhhhh
Confidence 334444444444444577887777 999999999999999999999999999999999999998732 78999999
Q ss_pred HHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHH
Q 000051 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2612)
Q Consensus 1281 i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~ 1360 (2612)
+++.|.++.|+...|++...+++.+++.+++|++.||++++.|++++...........+..++..+.+..+...|+++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999877766555555555555555778999999999
Q ss_pred HHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 000051 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2612)
Q Consensus 1361 ~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa 1440 (2612)
++++++++.|...+....++..+.+.+.++++...|++++.++...+..+|..++||+..++|.++.+++|..+.||++|
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999888999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHH
Q 000051 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2612)
Q Consensus 1441 ~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~ 1520 (2612)
..+.+.++..++.++++.++|+++..+.+..|++|.++++++|.|++++|+|++.++++++|.+.+.|.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000051 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2612)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l 1600 (2612)
.|+..+++.+.|++++.++|.|++++.||+.++.+|++.++.++|++++++++++.++|.+.+++.+++..+++.++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHH
Q 000051 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2612)
Q Consensus 1601 ~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~ 1680 (2612)
+++|..+.+++++.||++.++|.+...+.|+.|++|..+++++|.+.+.+|+..+++.+|++.+.+.++....+|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHhChhhHHhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHH
Q 000051 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2612)
Q Consensus 1681 ~L~~i~~~~g~~~l~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al 1758 (2612)
.+++++...|.+...+++|.++...... ++.+|++.+.++..++..+|..|.+|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887664 67799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 000051 1759 GAGHVLVEH 1767 (2612)
Q Consensus 1759 ~al~~lv~~ 1767 (2612)
++...++.+
T Consensus 557 ~~~~~~~~~ 565 (569)
T KOG1242|consen 557 EAGEVEVLN 565 (569)
T ss_pred hhhhhhhcc
Confidence 887766544
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=458.65 Aligned_cols=1013 Identities=17% Similarity=0.199 Sum_probs=738.1
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH----HHHHHHhc--ccc-ccC
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQT--TFV-NTV 1569 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~----al~~L~~~--~~~-~~i 1569 (2612)
.++++..++++|.|.+++|++.|++|++.++..+++..+..++..|+..+-...+..|+ ++.+.+.. .+. ...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 46788899999999999999999999999999998888899999999886555555552 34443321 111 223
Q ss_pred ChhhHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1570 DAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1570 ~~~~l~~iip~L~~~l~--d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
.+.....+.|.+..++. +....++-.++++++.+....++ -+.++...++..+...+..+...||+.|..++|.++
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~--ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT--LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 44556677777777764 34556888899999888876654 455577778888888888999999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhc---cCCChhhHhHHHHHHH
Q 000051 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNC---SHQRASVRDGYLTLFK 1721 (2612)
Q Consensus 1648 ~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~---~~~~~~vR~~~~~~l~ 1721 (2612)
...+.+.+..++..+.+.|.+.......+..+++++.+++..|.. .++.++|.+.+.+ +..++++|+.++++++
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999988999999999999988776666678899999999999976 4578899998888 6678999999999999
Q ss_pred HhhhhhccchhhhHHhHHHHHHhhcCCCC---------------------h-------------hHHHHHHHHHHHHHHH
Q 000051 1722 YLPRSLGVQFQNYLQQVLPAILDGLADEN---------------------E-------------SVRDAALGAGHVLVEH 1767 (2612)
Q Consensus 1722 ~L~~~~g~~f~p~l~~iip~ll~~L~d~~---------------------~-------------~VR~~Al~al~~lv~~ 1767 (2612)
.+...++.+..||.+.++..++++++.+. + .||.+|++++..++..
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987210 0 2777777777766543
Q ss_pred hhh---chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHH
Q 000051 1768 YAT---TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2612)
Q Consensus 1768 ~~~---~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~ 1844 (2612)
-.+ .....+-|.+.....+....++...+...-.++.+.+....- ..+.+.-++ .+.......+.+ ....
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~-~~d~d~~e~-~g~~s~~~~L~~-----~~~~ 435 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEV-LADNDAMEQ-GGTPSDLSMLSD-----QVPL 435 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCccc-ccCchhhhc-cCCccchHHHHh-----hhHH
Confidence 211 112234455555555555566666666666666654433211 000000000 000000011111 1123
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhchh---
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGER--- 1919 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~--~~~R~~A~~aL~~lv~~~~~~--- 1919 (2612)
++.++-..+.+.+...|..++..+..++...|+.+.++++.++|.+...+.|.+ ...+..+...+.......++.
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc
Confidence 445554445566666899999999999999999999999999999999999654 466777777776665555554
Q ss_pred -hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh------hhHHHhHhHHHHHHHHHh--cCCcHHHHHHHHHHHH
Q 000051 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFS 1990 (2612)
Q Consensus 1920 -~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~D~d~~Vr~~A~~al~ 1990 (2612)
..+.+.|++..+..++.+.+-..+.....+++....+ -...+|..+++....+.+ .|.|.+||+.|+.+++
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3567778888888999988888777766666654433 234678888888887766 4889999999999999
Q ss_pred HHHHHhChh---hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHH-hCC
Q 000051 1991 TLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGP 2066 (2612)
Q Consensus 1991 ~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~-~g~ 2066 (2612)
.+..++|.. ....++|.+++.|+++.++-. +.+|+.-++.. ..-
T Consensus 596 q~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~--------------------------------AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 596 QIIANFGDFLGNELPRTLPILLERLGNEITRLT--------------------------------AVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHH--------------------------------HHHHHHHHHhcccee
Confidence 998888742 234456666666666554333 33444444431 234
Q ss_pred ChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh
Q 000051 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2612)
Q Consensus 2067 ~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~ 2142 (2612)
++.+.+..+++.+.+.+....+..|.....++..++.+++. ..+..++.++...+.+.+.++-+.|+.++..++..
T Consensus 644 ~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999888888999999999999887643 44778888888888888999999999999999988
Q ss_pred cccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH----hhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccc
Q 000051 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV----ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2612)
Q Consensus 2143 ~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~----~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2612)
.+..+......+++.++.++..+- +...+..++-.+. .+... .++ +.. +...+.. + +
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~-~l~-y~~-l~s~lt~------------P--V 784 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEP-DLD-YIS-LLSLLTA------------P--V 784 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCC-Ccc-HHH-HHHHHcC------------C--c
Confidence 877777788889999999887653 3333333333322 22111 111 111 1111100 0 0
Q ss_pred cCCCCCcCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHh-cCCCCHhHHHHHHHHH
Q 000051 2219 PGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII-GDRFPWQVKSAILSTL 2296 (2612)
Q Consensus 2219 ~g~~~p~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l-~~~~~~~vk~~al~~L 2296 (2612)
.+- ...| +.......|.|.+.++..++ +.-++.+. -|+.-+ ..+.+..+|..++.+|
T Consensus 785 ~~~----------------~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~a~----kl~~~~~s~~s~~~ikvfa~Lsl 843 (1233)
T KOG1824|consen 785 YEQ----------------VTDGLHKQAYYSIAKCVAALTCACP-QKSKSLAT----KLIQDLQSPKSSDSIKVFALLSL 843 (1233)
T ss_pred ccc----------------cccchhHHHHHHHHHHHHHHHHhcc-ccchhHHH----HHHHHHhCCCCchhHHHHHHhhh
Confidence 000 0001 11223345677777776665 22233333 334333 3445778999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~v 2376 (2612)
|++++..+.. ..+.+-.+++++++.++++|+.+|+.|||.+.. +++..|+|+++..+.+ ++.-++..+++|+++
T Consensus 844 GElgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlkev 917 (1233)
T KOG1824|consen 844 GELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLKEV 917 (1233)
T ss_pred hhhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHHHH
Confidence 9999877653 345666789999999999999999999999966 7889999999999975 567789999999999
Q ss_pred HHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhH------------------------------
Q 000051 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ------------------------------ 2426 (2612)
Q Consensus 2377 i~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~------------------------------ 2426 (2612)
+........-++.+.||.+|.+.+.+.++++|+.+|+|||+|+.+.|+.-
T Consensus 918 i~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~ 997 (1233)
T KOG1824|consen 918 IVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ 997 (1233)
T ss_pred HHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCC
Confidence 99877665578999999999999999999999999999999998777521
Q ss_pred -------HHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHH------------------hhh
Q 000051 2427 -------LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK------------------SSL 2481 (2612)
Q Consensus 2427 -------~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~------------------~~~ 2481 (2612)
..+.+.+++..+.+++..+|+-+..+++++....|.-+ .++.+++.+.+. +|.
T Consensus 998 p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI--rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~ 1075 (1233)
T KOG1824|consen 998 PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI--RDLLPELLPLLYSETKVRKELIREVEMGPFKHT 1075 (1233)
T ss_pred CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCcccc
Confidence 11222234444567777778777778888888777665 356666666654 455
Q ss_pred ccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHH
Q 000051 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPA 2561 (2612)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~ 2561 (2612)
.|++..+|+.|..|+..++..|... ..+.+|+..+..++.|+ .|+|.++..++..+|..+|+.|...++.++.+
T Consensus 1076 VDdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~Ep 1149 (1233)
T KOG1824|consen 1076 VDDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEP 1149 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 6677899999999999999998654 35788999888899887 89999999999999999999999999999999
Q ss_pred HHhhhc------------CCcchhhhhHHHHHHHHhcccccchhhhHhhhhhccC
Q 000051 2562 LAECLK------------DGSTPVRLAAERCAVHAFQLTRGIIYSRSTKIYNRLG 2604 (2612)
Q Consensus 2562 l~~~~~------------~~~~~vk~aae~~~~~~~~~~~~~~~~~~~~~~~~~~ 2604 (2612)
|-+.+. |+....|++|.||+.+++++++-+..-++.+++++.+
T Consensus 1150 Lr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v~~np~~~df~sqik 1204 (1233)
T KOG1824|consen 1150 LRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEVEKNPQFSDFESQIK 1204 (1233)
T ss_pred HHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhh
Confidence 998753 3556678888899999999988888777888877654
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=469.15 Aligned_cols=907 Identities=17% Similarity=0.192 Sum_probs=643.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCCCC
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2612)
..+.+|+++++||||.+|++|+++|++.+... + .......+..+..++++|++|. ++|...+.+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46899999999999999999999999887432 1 1223334566777778777754 6899888788
Q ss_pred CCCh-HhHHHhhc-CCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhh
Q 000051 1129 GTDY-SGLFKALS-HSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2612)
Q Consensus 1129 ~~~~-~~Ll~~l~-~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~ 1205 (2612)
++.+ ..||..+. ++...||++.|+++|++++. .|+.||++++.|+++.. +.+-..|+.+.+.|..++
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 7778 78887554 67889999999999999875 56689999999998742 223478999999999999
Q ss_pred hhhCCCChhHHHHH--HHhhhcCCCcHHHHHHHHHHHHHHHHhhC--cc---hhhhhHHHHHHHhccC--CCChHHhhhH
Q 000051 1206 DVLRTKDLPVIMTF--LISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNKK--ASDEEKYDLV 1276 (2612)
Q Consensus 1206 ~~~~~~~~~~i~~~--li~~~l~d~~~~VR~~~~~a~~~~i~~~g--~~---~~~~Llp~~~~~l~~~--~~~~~~~d~v 1276 (2612)
..++....+.+-.+ +..++++|++..||..+++|...++.... +. ....++|.+...+... ..+++..+.+
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 99998776643333 23699999988899999999999999885 22 2345556444433321 1222222333
Q ss_pred HhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCC--CHHHHHHHHhhhHHhHhhhcch-------hHHHHHHHHHHhh
Q 000051 1277 REGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-------APTLVSRLLDQLM 1347 (2612)
Q Consensus 1277 r~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~-------~~~li~~ll~~L~ 1347 (2612)
-+..+.++....+.+ .|.+..|+...+...++. .+.+|..+.+++..++...... ...+++.++..+.
T Consensus 227 l~~l~El~e~~pk~l---~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 227 LEALIELLESEPKLL---RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHhhchHHH---HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 333333333322222 456788888888877766 5789999999987777653211 1345555555544
Q ss_pred cC---C-----------C-hHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000051 1348 KS---D-----------K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2612)
Q Consensus 1348 ~~---~-----------~-~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~ 1412 (2612)
.. + + ....+.|.++|+.++.++|++.+.+ .+++.+..++++. +|..|++|+++++.+++|+++
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p-~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~ 381 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP-PLFEALEAMLQST-EWKERHAALLALSVIAEGCSD 381 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHH
Confidence 21 1 1 2356789999999999999988854 7999999999998 799999999999999999999
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhhhcCC-ChhhHHHHHHHHHHHHh
Q 000051 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~ia~ 1487 (2612)
.+.+.+.+++|.++.++.|++|.||.+|+.+++++...+.++ ....++|.|+..+++. +.++...|+.++..+.+
T Consensus 382 ~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 382 VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776 3466777888888764 56888888888777765
Q ss_pred -hCchhhhhhhchhHH-HHhhhhcCCCHHHHHHHHHHHHHHHhhcCC---hhHhhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000051 1488 -CAPQQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2612)
Q Consensus 1488 -~~p~~l~~~L~~ivp-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2612)
+..+.+.+||+.++. .+..+++...+.||+.++.+|+.++...++ ||++.++|.|...+...+++
T Consensus 462 ~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~---------- 531 (1075)
T KOG2171|consen 462 ECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK---------- 531 (1075)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch----------
Confidence 556689999999999 555556677899999999999999988775 57788888888887655421
Q ss_pred ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHH---hcCCCHHHHHHH
Q 000051 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSVA 1639 (2612)
Q Consensus 1563 ~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~---L~d~~~~VR~~A 1639 (2612)
.....|.+..++++.++..++. +.|.|+..+++..+... ..+.+...|...
T Consensus 532 -------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 532 -------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred -------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 1125677778888888887765 67899999999998888 445567789999
Q ss_pred HHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHH
Q 000051 1640 ARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1640 ~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
..+++.+++.+|++ +++.++|.++.+.+.+.....--. ....+....-|.+.. ++=..=.-.....--.-|+.+
T Consensus 586 ~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~A 662 (1075)
T KOG2171|consen 586 IAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--EDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKETA 662 (1075)
T ss_pred HHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hhhhhccccccchhh-ccCCceeeeeeehhHHHHHHH
Confidence 99999999999987 567788888877654432200000 000000000000000 000000000112233457889
Q ss_pred HHHHHHhhhhhccchhhhHHhHHHH-HHhhcCCCChhHHHHHHHHHHHHHHHhhh------c----hhhhhHHHHhhccC
Q 000051 1717 LTLFKYLPRSLGVQFQNYLQQVLPA-ILDGLADENESVRDAALGAGHVLVEHYAT------T----SLPLLLPAVEDGIF 1785 (2612)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l~~iip~-ll~~L~d~~~~VR~~Al~al~~lv~~~~~------~----~i~~llp~L~~~l~ 1785 (2612)
+.+++.++...+..|.||+.++++. +....-+.++.||.+|..++..++...-. . .+..+.|.+...+.
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~ 742 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE 742 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999994 34444467889999999999988765322 1 33456777777776
Q ss_pred CCchH-HHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc-hHHHHHHHHHHh-------ChhhHHHHHHHHHHHccCC
Q 000051 1786 NDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS-TEAHGRAIIEVL-------GRDKRNEVLAALYMVRSDV 1856 (2612)
Q Consensus 1786 d~~w~-vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~-~~~~~~~l~~~L-------g~~~~~~vl~~L~~~~~D~ 1856 (2612)
++... +-.+.++.++..+..++...- .++.... .......+.... ..+.-.+.-..-.....+.
T Consensus 743 ~E~e~~vl~~vl~~f~~~i~~~G~~~L-------~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~ 815 (1075)
T KOG2171|consen 743 EEPETEVLSEILESFAECIEVMGDNCL-------NEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQ 815 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCcccC-------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhh
Confidence 66555 555566667766665542210 0000000 000000000000 0000000000000011244
Q ss_pred CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcC
Q 000051 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLK 1933 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~ 1933 (2612)
+...-..+.+++..++...++.|.+.+..+.|.+++.+.+.....|.+|..++++++..+|+. +.+.++|.+...+.
T Consensus 816 d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~ 895 (1075)
T KOG2171|consen 816 DAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQ 895 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcC
Confidence 455667788889999999999999999999999999999877777999999999999999876 57889999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHhCh-hhhhhhHH
Q 000051 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGM-QAIDEIVP 2006 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d------~~Vr~~A~~al~~l~~~~g~-~~~~~ilp 2006 (2612)
|++|+||+++.+++|.+. ..++..+.+.+...+|.+...+..++ ...+++|+.|+++++.+... ..+++++|
T Consensus 896 d~~pEVRqaAsYGiGvla-q~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~ 974 (1075)
T KOG2171|consen 896 DSDPEVRQAAAYGMGVLA-QFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLP 974 (1075)
T ss_pred CCCHHHHHHHHHHHHHHH-HHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHH
Confidence 999999999999999864 45666677778888888888776543 34678899999999776432 34899999
Q ss_pred HHHHhccCC---CcchHHHHHHHHHhhhc
Q 000051 2007 TLLHALEDD---QTSDTALDGLKQILSVR 2032 (2612)
Q Consensus 2007 ~Ll~~L~~~---~~~~~al~~L~~il~~~ 2032 (2612)
.|+.+|.-. +.+....+.|..++...
T Consensus 975 ~~l~~LPl~~D~eEa~~iy~~l~~L~e~n 1003 (1075)
T KOG2171|consen 975 AWLSWLPLKEDKEEAVPIYTFLSDLYESN 1003 (1075)
T ss_pred HHHHhCCCccchhhhhhHHHHHHHHHHhC
Confidence 999998433 33345556666666443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=425.80 Aligned_cols=866 Identities=18% Similarity=0.222 Sum_probs=617.1
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-h--
Q 000051 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L-- 1208 (2612)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~-- 1208 (2612)
+..|+..|.++|..+|+.|.+++......-+ ..+.+ ..+... ..+-++|+.++.-++.++.. +
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~l~~L-~~i~~~------------~~~p~~Rq~aaVl~Rkl~~~~w~~ 71 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP-LLPAL-AHILAT------------SADPQVRQLAAVLLRKLLTKHWSR 71 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc-hHHHH-HHHHhc------------CCChHHHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999999999976654444 22222 222211 12337999999999988753 2
Q ss_pred -CCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHH
Q 000051 1209 -RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2612)
Q Consensus 1209 -~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~L 1287 (2612)
..+....+..-++......+.+.||.+..+++.++.+....+.|+++++.+.++.+.++ ...||.++..+..+
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSSL 145 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHhh
Confidence 22333345555554556788999999999999999999887899999999999988743 35789999999888
Q ss_pred hhhhccC-CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcc------hhHHHHHHHHHHhhcC---CChHHHHH
Q 000051 1288 AKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKS---DKYGERRG 1357 (2612)
Q Consensus 1288 a~~l~~~-~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~------~~~~li~~ll~~L~~~---~~~~~R~~ 1357 (2612)
...+... .+++..+...+.+++.|++..||..++++++.++..... ....++|.+++.+... +|...-..
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 8777654 468899999999999999988999999999998877631 2356778777776543 23333455
Q ss_pred HHHHHHHHHhhhCcchhhh--hcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHcCC
Q 000051 1358 AAFGLAGVVKGFGISSLKK--YGIAATLREGLADRN-SAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSD 1431 (2612)
Q Consensus 1358 Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~i~~~~-~~~~R~~Al~al~~L~~~~~---~~~~~~v~~ilp~ll~~l~D 1431 (2612)
+..+|..++...+. .+.+ ..++.+..+...++. +...|+.|+..+..+++..+ +...+|...++|.++..+.|
T Consensus 226 ~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte 304 (1075)
T KOG2171|consen 226 ALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE 304 (1075)
T ss_pred HHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC
Confidence 55566666654332 2211 156666666666543 78899999999999999855 55667888999999998864
Q ss_pred CCH----------------HHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1432 QVV----------------AVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1432 ~~~----------------~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
... .-...|..+++.++..+++..+ ..+++.+-..+.+.+|+.|++++.+|+.+++++++++.
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 321 2445678899999999987654 67777777888999999999999999999999999999
Q ss_pred hhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhH
Q 000051 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l 1574 (2612)
..+++|++.+++.++|+||+||.+|+.|+|++...+. |+++. .+.
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~~ 429 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KHH 429 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HHH
Confidence 9999999999999999999999999999999998775 32221 011
Q ss_pred hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1575 ALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~-~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
..+.|.+...+++. +.++..+|+.++.++.... ..+.+.||++.+|. .+..+++++.+.||+.+..+||+++...++
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 22333344444432 4688888888888888754 33678999999999 677777788999999999999999999987
Q ss_pred C---CchhhHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhChhhHHh----HhHHHHHh---ccCCChhhHhHHHHH
Q 000051 1653 E---NFPDLVSWLLDALKSDN---SNVERSGAAQGLSEVLAALGTVYFEH----ILPDIIRN---CSHQRASVRDGYLTL 1719 (2612)
Q Consensus 1653 ~---~~~~ll~~L~~~L~~~~---~~~~R~~aa~~L~~i~~~~g~~~l~~----llp~l~~~---~~~~~~~vR~~~~~~ 1719 (2612)
. |++.++|.|...|.+.. ....|.....|++-+..++|++.+.+ ++..+... ..+.+...|...+..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 6 89999999999987654 23456677889999999999887644 44444444 334578899999999
Q ss_pred HHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHH
Q 000051 1720 FKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2612)
Q Consensus 1720 l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll 1799 (2612)
|+.+|+.+|++|.||++.++|+++....-..+.. ....+ ...+.-.++.|....
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~-------------~~d~~-------d~e~~~~~~~~e~~~------ 642 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVA-------------LSDEE-------DEEEEQDLDGWEVVE------ 642 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCccc-------------CcCch-------hhhhccccccchhhc------
Confidence 9999999999999999999999998765322110 00000 000000111221100
Q ss_pred HHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhH
Q 000051 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2612)
Q Consensus 1800 ~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l 1879 (2612)
..+++.. | ..-....-+..|+..++.++......|
T Consensus 643 ------------------~~~~e~~-------------~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 643 ------------------LGDKENI-------------G--------------IRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred ------------------cCCceee-------------e--------------eeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 0000000 0 011122346778899999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHh------chh----hhhhHHHHHhhhcC-CCChhHHHHHHHHH
Q 000051 1880 KEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKL------GER----VLPSIIPILSRGLK-DPSASRRQGVCIGL 1947 (2612)
Q Consensus 1880 ~~~l~~ll~~L~~~-L~~~~~~~R~~A~~aL~~lv~~~------~~~----~l~~llp~L~~~L~-d~~~~vR~~a~~aL 1947 (2612)
.+|+...++..+.. .-..+..+|.+|+.++..+++.. ++. .+..+.|.+...++ .+++++-.....++
T Consensus 678 ~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f 757 (1075)
T KOG2171|consen 678 APYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESF 757 (1075)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 99999988844433 34778899999999999888654 222 34566777777666 46788889999999
Q ss_pred HHHHHhhChhhH-HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHH
Q 000051 1948 SEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLK 2026 (2612)
Q Consensus 1948 ~~li~~~~~~~l-~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~ 2026 (2612)
++.+..+|+..+ .++...++..+...+.+...+.+. ....+.-++..-.--+.+. +...+.++
T Consensus 758 ~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~-----------r~~~~~eed~d~~eee~~~--e~d~~ll~--- 821 (1075)
T KOG2171|consen 758 AECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQD-----------RQEEDDEEDDDIEEEEDLD--EQDAYLLD--- 821 (1075)
T ss_pred HHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhhhhhhhhHHHHHHh--hhhHHHHH---
Confidence 999888875443 233334433333322211111111 0000000000000000000 00011111
Q ss_pred HHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcc
Q 000051 2027 QILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID 2106 (2612)
Q Consensus 2027 ~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~ 2106 (2612)
.....+.+++...+.++.|++..+.|.++..+....+.-|..+..+++.++..++
T Consensus 822 -------------------------~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~ 876 (1075)
T KOG2171|consen 822 -------------------------AISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCG 876 (1075)
T ss_pred -------------------------HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence 2335667777888999999999999999999977766559999999999999876
Q ss_pred c---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCC
Q 000051 2107 E---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166 (2612)
Q Consensus 2107 ~---~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d 2166 (2612)
+ .+...+++.++..+.|.+|.||++|.+.+|.+++..+.+|.+.....++.|...+..++
T Consensus 877 ~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ 939 (1075)
T KOG2171|consen 877 EASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPL 939 (1075)
T ss_pred cccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChh
Confidence 5 55889999999999999999999999999999999998888887787877777776443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=364.09 Aligned_cols=1084 Identities=18% Similarity=0.210 Sum_probs=718.9
Q ss_pred CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcch
Q 000051 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2612)
Q Consensus 1295 ~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2612)
+...+.++..+++.|+|.+.+||..|.+|+++++.++++. .+.+++.+...+.... .+.|..+..+|..++..+++..
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccch-hhhccHHHHHHHHHHhcCCCcc
Confidence 4456778999999999999999999999999999988764 5778888888877665 4789999999999998887522
Q ss_pred hh------hhcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000051 1374 LK------KYGIAATLREGLADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2612)
Q Consensus 1374 l~------~~~i~~~L~~~i~~~~-~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2612)
-. -..+.+.+.+.+.... ....+-.++..++.+...+|..+.++...++..++..++-+...||+.|..+++.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 11 1245666666665432 3447778888888888889988888888899999999999999999999999999
Q ss_pred HHHhhcHHhHHhHHHHHHhhhcCC-ChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh---cCCCHHHHHHHHHH
Q 000051 1447 MMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTA 1522 (2612)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L---~D~~~~VR~aA~~a 1522 (2612)
++...+.+.+..++..++++|... +...-+..+.+|++++..+...+..+++.++|.+.+++ +..+.+.|+.+.++
T Consensus 201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 999999999999999999999754 45556678899999999999999999999999999999 66688999999999
Q ss_pred HHHHHhhcCC---hhHhhHHHHHHhhcC-CCChhHH----HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000051 1523 LQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2612)
Q Consensus 1523 L~~l~~~~~~---~~i~~ivp~Ll~~l~-d~~~~~r----~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~ 1594 (2612)
++.|....+. |++..++..+++.+. ||+.... +--+.+-.... ..+ ...-..-+|.+|.||+
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eD-----de~-----~deYsDDeD~SWkVRR 350 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEED-----DEQ-----DDEYSDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhcccc-----chh-----ccccccccchhHHHHH
Confidence 9999987752 455666666666653 7753211 00000000000 000 0000011345899999
Q ss_pred HHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH--HhccCCCH
Q 000051 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSN 1672 (2612)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~--~L~~~~~~ 1672 (2612)
+|++++..+... ..+-+..++..+-|.+...+++....|+...+.++-.+....+. ..+++.+ ........
T Consensus 351 aAaKcl~a~IsS--R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 351 AAAKCLEAVISS--RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTP 423 (1233)
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCc
Confidence 999999988763 33445567778889999999999999999999999888876542 2222210 00000000
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC--
Q 000051 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-- 1750 (2612)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~-- 1750 (2612)
..+....+.. ..++..+-+.+.+.+-..|.+++..+..+...+++...+|++.++|.+...+.|.+
T Consensus 424 s~~~~L~~~~------------~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 424 SDLSMLSDQV------------PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cchHHHHhhh------------HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 0111111111 12233333334455556899999999999999999999999999999999999875
Q ss_pred hhHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch
Q 000051 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~ 1826 (2612)
...+..++..+...+...+++ .++.+.|.+.....|..+++-.+++-..+.++..+.+....... |...+
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~----d~~~~-- 565 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSF----DASPY-- 565 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccC----CCChh--
Confidence 356777777777776666665 34567788888899999999999999999998776443221111 00000
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000051 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2612)
Q Consensus 1827 ~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~ 1906 (2612)
+...+ +-.++.+ ...|.+.+||+.|+.+++.++.+++..++..+|..++.++++++ ++-.|..|.
T Consensus 566 --v~~m~---------~~tl~rL--~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Av 630 (1233)
T KOG1824|consen 566 --VKTMY---------DCTLQRL--KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAV 630 (1233)
T ss_pred --HHHHH---------HHHHHHH--hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHH
Confidence 11111 1111111 24788999999999999999999999899999999999999996 567899999
Q ss_pred HHHHHHHHHhc----hhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHH
Q 000051 1907 RALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2612)
Q Consensus 1907 ~aL~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr 1982 (2612)
+++..++...- ...+..++|.+...++......|.+...++-+++...++..-...++.++..+-..+.+.|-.+.
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99998875431 22567778888877776677788999999999888776554455567777788888889999999
Q ss_pred HHHHHHHHHHHHHhCh---hhhhhhHHHHHHhccCCCcchHHHHHHHHHhh----hccccc-ccccchhhccCCcchhHH
Q 000051 1983 ESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILS----VRTTAV-LPHILPKLVHLPLSAFNA 2054 (2612)
Q Consensus 1983 ~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~----~~~~~v-lp~Lip~L~~~~~~~~~~ 2054 (2612)
+.|...+..+...... ...+.+++.++..++++--.+.++.++...+. ++.... .-.++..+..+-.....
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~- 789 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVT- 789 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccc-
Confidence 9998888777654332 23467899999999988777777666554332 111100 11111111111100000
Q ss_pred HHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc---HHHHHHHHHhhcCCCChhHHHH
Q 000051 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASIRRS 2131 (2612)
Q Consensus 2055 ~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~---l~~ll~~Ll~~l~~~~~~vR~~ 2131 (2612)
.. -+...-...+.|.+.+...+++.. ...++..+.. ...+...|.-
T Consensus 790 -----------~~------------------l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvf 838 (1233)
T KOG1824|consen 790 -----------DG------------------LHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVF 838 (1233)
T ss_pred -----------cc------------------hhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHH
Confidence 00 001111223334444444443221 2222222222 1344566677
Q ss_pred HHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhh--
Q 000051 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR-- 2209 (2612)
Q Consensus 2132 A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~-- 2209 (2612)
|...+|.+..+.+....+ ++-..++..|+.++++|+.+|..|||.+....-..++|.+...+ .+...+...
T Consensus 839 a~LslGElgr~~~~s~~~---e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi----~sqpk~QyLLL 911 (1233)
T KOG1824|consen 839 ALLSLGELGRRKDLSPQN---ELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQI----ESQPKRQYLLL 911 (1233)
T ss_pred HHhhhhhhccCCCCCcch---hhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHH----hcchHhHHHHH
Confidence 777777776654332222 33335666777777777777777777776544444444433322 111000000
Q ss_pred -hhcC--CcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCH
Q 000051 2210 -KKKG--GPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2612)
Q Consensus 2210 -~~~~--~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~ 2286 (2612)
.-+. ....+.++ -.++..|...+.+-......-.|...++|||.++-.-+ +.+-|- |-..+.. ..+
T Consensus 912 hSlkevi~~~svd~~--~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep-esLlpk-------L~~~~~S-~a~ 980 (1233)
T KOG1824|consen 912 HSLKEVIVSASVDGL--KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP-ESLLPK-------LKLLLRS-EAS 980 (1233)
T ss_pred HHHHHHHHHhccchh--hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh-HHHHHH-------HHHHhcC-CCc
Confidence 0000 00001111 13445566666665555555668899999999996655 444443 2222322 366
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC-hhHHHHHHHHhhhcCCHHH
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-VDPLVGDLLSSLQVSDAGI 2365 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~Ll~~l~~~d~~v 2365 (2612)
..|..++.++.-.+.--+..+.+++.+-+.-|++.++|++..||..|..++...+...|. +..++|+|+.++.+. ..+
T Consensus 981 ~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e-Tkv 1059 (1233)
T KOG1824|consen 981 NTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE-TKV 1059 (1233)
T ss_pred chhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh-hhh
Confidence 778888887776666667788889999999999999999999999999999988766554 667889999988653 234
Q ss_pred HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHhhcCCCCch
Q 000051 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED-GQLADLLQELLNLASSPSWA 2444 (2612)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~-~~~~~~l~~ll~~~~~~~~~ 2444 (2612)
|...++ +| .+|+ +++--|+.-+.|.+|-+|+-.|....-+ -+..+|++.+-..+.+. ..
T Consensus 1060 rkelIr---eV--eMGP--------------FKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-yd 1119 (1233)
T KOG1824|consen 1060 RKELIR---EV--EMGP--------------FKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YD 1119 (1233)
T ss_pred hHhhhh---hh--cccC--------------ccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hH
Confidence 432211 11 1121 0222244557899999999888765332 24667777554444444 55
Q ss_pred hhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhcc------------CChhHHHhHHHHHHHHHhh
Q 000051 2445 ARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD------------EKFPLREASTKALGRLLLH 2502 (2612)
Q Consensus 2445 ~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~------------~~~~ir~~a~~alg~ll~~ 2502 (2612)
.+.-..+.+..+..-+|+.+.+ ..+.+++.+.+-+.- ...+..+.|.+|+..++.-
T Consensus 1120 iKmlt~l~l~rLa~lcPs~Vlq--rlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~i 1187 (1233)
T KOG1824|consen 1120 IKMLTFLMLARLADLCPSAVLQ--RLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTI 1187 (1233)
T ss_pred HHHHHHHHHHHHHhhCcHHHHH--HHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcc
Confidence 6776777777777788888753 355666665543321 1347788899999888554
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=372.12 Aligned_cols=318 Identities=26% Similarity=0.366 Sum_probs=246.6
Q ss_pred hHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhHhhcCCHHHHHHHHHHHHHHHHhccCcccHHHHHHHHhhccch
Q 000051 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2612)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~al~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2612)
||||+.+++||..++. . .+|.+|+++++|++.||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred h-HHHHHHHHHHHHHHh---hchhhhhhhhhHHHHHHHHHHhhhccccc-----hhHHHHHHHHHHHhhhhhhhHhhhhH
Q 000051 426 E-ALRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2612)
Q Consensus 426 ~-~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~ 496 (2612)
+ ++||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++.... .+ ..+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~-~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LD-KIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-ch-hhhh--hh
Confidence 8 499999999999999 55677888999999999999999999765 45555555521111 11 2222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000051 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2612)
Q Consensus 497 ~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vr~~a~~ 572 (2612)
..+|.++.++||+| +++|+|+| .++||.+|.+++++.++..+..+..++. ..+|+++|+|++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47898888888885 56999999 6677888889999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-hHHHHHHHHHHhHhhhhhHhhccCCCCCCcccCCCCCCCCCHHHHHHHHHHhhccccc--c-----CC
Q 000051 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA--R-----GP 644 (2612)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-----~~ 644 (2612)
.+++++.++|+ +...++.++++|+....... ...+.+....... .....+++ ....... + .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~~~~---~~s~~~~~~~~~~------~~v~~ai~-~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSETGD---KESSAENSSDKNL------SPVLSAIC-LAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhccccc---ccccccccccccc------ccchHHHH-hhhHhhhccccchhHHH
Confidence 99999999998 78889999999997653111 0000110111111 11222221 1111111 0 34
Q ss_pred cchhhhhhhccCCccccccccccchhhhHHhHHhhCCChHHHHhhcHH
Q 000051 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2612)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2612)
+.++++|++||||.|.. +++|+++| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 67899999999999976 37899995 33 99999999999964
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=335.57 Aligned_cols=661 Identities=17% Similarity=0.223 Sum_probs=465.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheee-----------------cC-CchHHHHHHHH
Q 000051 1058 EVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV-----------------HD-PEKSVAEAAED 1119 (2612)
Q Consensus 1058 ~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~la~~ 1119 (2612)
++.++|..++|||.++|+.|+.+|.+.. ..+++..+..+.++...- .+ .+++...-...
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 5678888899999999999999998864 345555554444443321 12 22333333456
Q ss_pred HHHhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000051 1120 IWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2612)
Q Consensus 1120 ~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2612)
.|-....+.++.+ ..++.+|+++.+..+..|++++|.++. +-| +.||+++..+.+.. .. ..+..+|++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv----~~-----~~~~~~k~~ 149 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV----GE-----EQASMVKES 149 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc----cc-----ccchHHHHH
Confidence 8987777777777 778899999999999999999999864 333 36677666665432 11 112258999
Q ss_pred HHHHHHHhhhhhCCCCh----hHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHhhCcc-----hhhhhHHH-HHHHhcc
Q 000051 1197 IALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHGRD-----NVSLLFPI-FENYLNK 1265 (2612)
Q Consensus 1197 ~~~al~~~~~~~~~~~~----~~i~~~li~~~l-~d~~~~VR~~~~~a~~~~i~~~g~~-----~~~~Llp~-~~~~l~~ 1265 (2612)
+..+++|+++.+.++.. +.++..++.++. ..++..||.++.+|+...++.-+.+ .++.+|.+ +|.+..
T Consensus 150 slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~- 228 (859)
T KOG1241|consen 150 SLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQS- 228 (859)
T ss_pred HHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccC-
Confidence 99999999998887654 346666665554 3578999999999987766654432 24555554 344333
Q ss_pred CCCChHHhhhHHhHHHHHHHHHhh-hhccCCcchHh-HHHHHHHhcCCCCHHHHHHHHhhhHHhHhh-------------
Q 000051 1266 KASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------------- 1330 (2612)
Q Consensus 1266 ~~~~~~~~d~vr~~~i~~l~~La~-~l~~~~~~~~~-i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~------------- 1330 (2612)
.+.+++.+++.++..|.. |++.-.+++.. ++..-+..++.++++|...+.+--+.+...
T Consensus 229 ------~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 229 ------PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 245788899888887773 33322355544 777788888888888876665543322210
Q ss_pred ----------hcchhHHHHHHHHHHhhcC------CChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHH
Q 000051 1331 ----------MQDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2612)
Q Consensus 1331 ----------~~~~~~~li~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~ 1394 (2612)
.+.....++|.+++.|.++ ++|...++|..||..+++..|+..+. ++++++++.++++ ||+
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQNP-DWR 379 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCCc-chh
Confidence 1112347899999999873 47999999999999999999999886 8999999999998 899
Q ss_pred HHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhHHHHHHhhhc
Q 000051 1395 RREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~Ll~~L~ 1468 (2612)
.|++|.++||++.++.. ..+.|++.+.+|.++..+.|+...||+++..+++.+.+.++.... ..+++.++++|.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 99999999999999865 568899999999999999999999999999999999887764432 334444555554
Q ss_pred CCChhhHHHHHHHHHHHHhhCchhh---------hhhhchhHHHHhhhhc--C-CCHHHHHHHHHHHHHHHhhcCChhH-
Q 000051 1469 DKAWRTKQSSVQLLGAMAYCAPQQL---------SQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIKNPEI- 1535 (2612)
Q Consensus 1469 ~~~w~~r~~a~~~L~~ia~~~p~~l---------~~~L~~ivp~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~~~~i- 1535 (2612)
+ ..++-..+|+++..+++.+++.. .++++.|+..|++.-+ | .....|.+|..||+.+.+...+...
T Consensus 460 D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 460 D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 35566667777776665543321 2345556666665543 2 3456777777777777766543221
Q ss_pred --hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcc
Q 000051 1536 --ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2612)
Q Consensus 1536 --~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2612)
..+.+..+..+ ..++. .......+.. .-.++....|..++.+.+.++. ++
T Consensus 539 ~v~~~~l~il~kl-------~q~i~----~~~l~~~dr~---------------q~~eLQs~Lc~~Lq~i~rk~~~--~~ 590 (859)
T KOG1241|consen 539 MVQKLTLVILEKL-------DQTIS----SQILSLADRA---------------QLNELQSLLCNTLQSIIRKVGS--DI 590 (859)
T ss_pred HHHHHHHHHHHHH-------HHHHH----HHhccHhhHH---------------HHHHHHHHHHHHHHHHHHHccc--cc
Confidence 11222211111 01111 0000000000 1125566677778887777654 88
Q ss_pred hhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000051 1614 IPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2612)
.++.+.+|..+.+.++. .+..+.+.|+-+++.++..+|+. |++.+.|+|...|++..++.+-..+.--+|.+++.+
T Consensus 591 ~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998 56678999999999999999976 789999999999987765655444444478899999
Q ss_pred ChhhH---HhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC---CC--C------hhH
Q 000051 1690 GTVYF---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA---DE--N------ESV 1753 (2612)
Q Consensus 1690 g~~~l---~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~---d~--~------~~V 1753 (2612)
+.+.. ++++..+++.++++ +..+|...+++|+.++...|.+|.||++.+++.+.+.-+ |. + +.+
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~L 750 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDEL 750 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 88743 78899999999886 677999999999999999999999999999998876542 22 1 235
Q ss_pred HHHHHHHHHHHHHHhh
Q 000051 1754 RDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1754 R~~Al~al~~lv~~~~ 1769 (2612)
|++++++...++..+.
T Consensus 751 Re~~leay~gi~qglk 766 (859)
T KOG1241|consen 751 REGILEAYTGIIQGLK 766 (859)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666665555443
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-29 Score=298.57 Aligned_cols=767 Identities=18% Similarity=0.209 Sum_probs=509.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccc---cccCChhhHhhHHHHHHHh
Q 000051 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~---~~~i~~~~l~~iip~L~~~ 1584 (2612)
...+++.+|+++...+.++-. -|++...+-.++-.....+..+|.+...+.+... ........+..+-..+.++
T Consensus 22 s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~ 98 (885)
T KOG2023|consen 22 SQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHG 98 (885)
T ss_pred ccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhh
Confidence 345789999999999998865 2444333333332333334445644444443211 1223345666777788889
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--------CCch
Q 000051 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--------ENFP 1656 (2612)
Q Consensus 1585 l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~--------~~~~ 1656 (2612)
+.|.++-+|....-++..++.. .-....+.++|.|.++|..++....+.|+.||..+++-..+ ..++
T Consensus 99 lgd~~~lIr~tvGivITTI~s~-----~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 99 LGDASPLIRATVGIVITTIAST-----GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred ccCchHHHHhhhhheeeeeecc-----cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 9999988887665555555442 22344588999999999999999999999999999874332 2456
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
-++|.+++..+.. +...|..+..|+-.++..-... .++.++..+....++.+++||...+.+|..+...-++.+.|
T Consensus 174 ~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HhHHHHHHHHhCC-ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 7889999888776 4568998888887765443332 45778888899999999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHH--Hh
Q 000051 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF--KV 1806 (2612)
Q Consensus 1734 ~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-----~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~--~~ 1806 (2612)
|+..++..++....|.+++|--.|.+....+.+.- -..+++.++|.|.++|.-.+..+ -+++.-=. .+
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~-----~LL~~~eeD~~v 327 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI-----ILLKNNEEDESV 327 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH-----HHhcCccccccC
Confidence 99999999999999999998777766666554321 12256778888887773221111 01110000 00
Q ss_pred cCC-------c--ccc----cc-cCCC-CCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 000051 1807 AGT-------S--GKA----LL-EGGS-DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2612)
Q Consensus 1807 ~~~-------~--~~~----~~-~~~~-ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2612)
++. - ++. .. ++++ |||+++. ...+..|+.|..++..+..+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDVL 382 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDVL 382 (885)
T ss_pred CchhhhccchhhhchhccCcccccccccccccccc-------------------------ccccccccHhhccHHHHHHH
Confidence 000 0 000 00 0000 0000000 01345689999888888888
Q ss_pred HhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 000051 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2612)
Q Consensus 1872 ~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~ 1948 (2612)
+.-.+. +.++.++|.+-..|.+.+|.+|.++.-++|.+++.+-.. .+|.++|.+.+.|.|+.+-||.-+|+.|+
T Consensus 383 anvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs 459 (885)
T KOG2023|consen 383 ANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS 459 (885)
T ss_pred HHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence 776665 678999999999999999999999999999999887554 47889999999999999999999999998
Q ss_pred HHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHH
Q 000051 1949 EVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2612)
Q Consensus 1949 ~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~i 2028 (2612)
........+.-..|+..++..+++.+-|.+..|+++|+.||..+-+..|. +++|
T Consensus 460 Rys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp---------------------- 513 (885)
T KOG2023|consen 460 RYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE----ELVP---------------------- 513 (885)
T ss_pred hhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc----hhHH----------------------
Confidence 86554443444567788888888888899999999999999888665443 3333
Q ss_pred hhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC-CCHHHHHHHHHHHHHhhhhcc-
Q 000051 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVID- 2106 (2612)
Q Consensus 2029 l~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~-~~~~vr~~a~~al~~l~~~~~- 2106 (2612)
|+..|+..|+.++.. ....+ ...-.|+++++.+++
T Consensus 514 ------------------------------------------~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 514 ------------------------------------------YLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGH 550 (885)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHH
Confidence 333333333333211 00000 011223344444332
Q ss_pred ----cccHHHHHHHHHhh---cCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 000051 2107 ----EEGVESLVSELLKG---VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179 (2612)
Q Consensus 2107 ----~~~l~~ll~~Ll~~---l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~ 2179 (2612)
..+++-+||.|++. ++|+|... ---++|+..++...+..|.||.+.+....+..+.. ++..
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~-----------t~q~ 618 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQK-----------TLQL 618 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH-----------HHHH
Confidence 24567777777654 45555443 34567888888888888999988888887776632 1222
Q ss_pred HHhhcCcccc--c--cHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc------hhhHHHHHHHHhcCCHHHHHHH
Q 000051 2180 VVASVPKEVQ--P--SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL------QPLLPIFLQGLISGSAELREQA 2249 (2612)
Q Consensus 2180 l~~~~~~~~l--~--~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l------~~ilp~l~~~L~~~~~~~r~~a 2249 (2612)
+.+....... | .++-...+.+..... + ++.++ +.++..+++++.+..+++|+.+
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLae-----g-----------Lg~~ie~Lva~snl~~lll~C~~D~~peVRQS~ 682 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAE-----G-----------LGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSA 682 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHH-----H-----------hhhchHHHhhhccHHHHHHHHhccCChHHHHHH
Confidence 2232221100 0 000000011111000 0 01111 1277889999999999999999
Q ss_pred HHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CH
Q 000051 2250 ALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TR 2327 (2612)
Q Consensus 2250 a~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~ 2327 (2612)
...+|++++... +.+.|+...+...+-..+.. ..-.+...|.+++|+++.++|...++|+..++..++..++.+ +.
T Consensus 683 FALLGDltk~c~-~~v~p~~~~fl~~lg~Nl~~-~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~ 760 (885)
T KOG2023|consen 683 FALLGDLTKACF-EHVIPNLADFLPILGANLNP-ENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPK 760 (885)
T ss_pred HHHHHHHHHHHH-HhccchHHHHHHHHhhcCCh-hhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchH
Confidence 999999999986 78999988887655544432 245688899999999999999999999998888887777765 67
Q ss_pred HHHHHHHHHHHHHHhc-----cCChhHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhc
Q 000051 2328 TVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2612)
Q Consensus 2328 ~vR~~Aa~aLg~L~~~-----~~~~~~~l~~Ll~~l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2612)
++-.+.+-++|+|..+ .|+++.++...+..+++ .|.+-++++...+..++...+.... .....+...+-+. .
T Consensus 761 tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv-~~~~f~c~aiAsw-~ 838 (885)
T KOG2023|consen 761 TLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV-SSFIFICDAIASW-S 838 (885)
T ss_pred HHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh-hhhHHHHHHHhcc-c
Confidence 8889999999999554 36777788888777765 3567789999999998876544331 1122222333222 2
Q ss_pred CCCHHHHHHHHHHHHH
Q 000051 2402 HDDDHVRVSAASILGI 2417 (2612)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~ 2417 (2612)
+.++.+|....+.|..
T Consensus 839 np~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 839 NPEDDLRDEFYKILQG 854 (885)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3445566555544433
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-27 Score=283.75 Aligned_cols=747 Identities=17% Similarity=0.225 Sum_probs=512.6
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhhCCCCh
Q 000051 1134 GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDL 1213 (2612)
Q Consensus 1134 ~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~~~~~~~ 1213 (2612)
.|++.-.++|..+|+.+-..+-..- .+|+.-..+.=.|.. ++ .+....|..+...|+.-...-....-
T Consensus 17 ~lLk~s~Spn~~~~~~~~~~leq~~-~~pdfnnYL~~IL~~-----~~------~~d~~~Rs~aGLlLKNnvr~~~~~~~ 84 (885)
T KOG2023|consen 17 QLLKNSQSPNSETRNNVQEKLEQFN-LFPDFNNYLIYILIR-----AK------SEDVPTRSLAGLLLKNNVRGHYNSIP 84 (885)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHh-cccchhceeeEEEec-----cc------ccchhHHHHhhhhHhccccccccCCC
Confidence 4445556789999998887764333 255543222211111 01 22345788888877755432111111
Q ss_pred hHHHHHHH---hhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhh
Q 000051 1214 PVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKH 1290 (2612)
Q Consensus 1214 ~~i~~~li---~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~ 1290 (2612)
++...|+- .++++|.++.+|......+..++...|-.+|++++|.+-++|..++. +..|+++..+..+++.
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKICED 158 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHHhh
Confidence 22333332 38899999999999888888898989999999999999999987443 3457777677666642
Q ss_pred ----hccC--CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhh---cCCChHHHHHHHHH
Q 000051 1291 ----LAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM---KSDKYGERRGAAFG 1361 (2612)
Q Consensus 1291 ----l~~~--~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~---~~~~~~~R~~Aa~~ 1361 (2612)
++.+ +..++.++++++++++++++.+|..+..|+..++....+..-..++..++.++ ++++..+|+..+.+
T Consensus 159 sa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~a 238 (885)
T KOG2023|consen 159 SAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRA 238 (885)
T ss_pred hHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 2222 34578899999999999999999999999998876655544344455555443 45567899999999
Q ss_pred HHHHHhhhCcchhh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHcCC-------
Q 000051 1362 LAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSD------- 1431 (2612)
Q Consensus 1362 L~~l~~~lg~~~l~-~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~--~~~~~~~~v~~ilp~ll~~l~D------- 1431 (2612)
+..+....+.+... -..+++++.+..++. |.++--.|+.....+++. +...+.||+.+++|.++..|.-
T Consensus 239 lv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 239 LVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 99998766554332 126778877777777 566777788878888874 4467889999999999885421
Q ss_pred ----C---------------------------------------------CHHHHHHHHHHHHHHHHhhcHHhHHhHHHH
Q 000051 1432 ----Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2612)
Q Consensus 1432 ----~---------------------------------------------~~~VR~aa~~al~~i~~~l~~~~v~~ilp~ 1462 (2612)
. +.+.|+..+.+++.++..++.+....++|.
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 0 135788888899999988888888999999
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHH
Q 000051 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2612)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~L 1542 (2612)
+-+.|.+++|.+|.+++.+||+||+++-+.+-++||.++|.++.+|+|..+-||...|++|.+++..+-+..-
T Consensus 398 Lk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~------- 470 (885)
T KOG2023|consen 398 LKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR------- 470 (885)
T ss_pred HHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999987642110
Q ss_pred HhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHH
Q 000051 1543 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622 (2612)
Q Consensus 1543 l~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~ 1622 (2612)
..++.-++.-+.+.+-|.+.+|+.+||.++..+-+..+ .++.||+..++.
T Consensus 471 ----------------------------~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~--~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 471 ----------------------------DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG--EELVPYLEYILD 520 (885)
T ss_pred ----------------------------HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHH
Confidence 01111223333444556677888889988888877543 488999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHhChhhH
Q 000051 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDAL---KSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2612)
Q Consensus 1623 ~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-----~~~~ll~~L~~~L---~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2612)
.+..++.--...--..-..|+|.++..+|.. |..-++|.|++.. ++++ .+---...|++.++.++|..++
T Consensus 521 ~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D--KdLfPLLEClSsia~AL~~gF~ 598 (885)
T KOG2023|consen 521 QLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD--KDLFPLLECLSSIASALGVGFL 598 (885)
T ss_pred HHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc--chHHHHHHHHHHHHHHHhcccc
Confidence 8888775321111224566788888888753 6777888887654 3332 2445667888888888876533
Q ss_pred -------Hh---HhHHHHHhc---cC------CChhhHhHHHHHHHHhhhhhccchhhhHHh--HHHHHHhhcCCCChhH
Q 000051 1695 -------EH---ILPDIIRNC---SH------QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESV 1753 (2612)
Q Consensus 1695 -------~~---llp~l~~~~---~~------~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~--iip~ll~~L~d~~~~V 1753 (2612)
.. ++....+.. .. ++...--.++.++.-+++.+|...++.+.. +...++.++.|+.++|
T Consensus 599 P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peV 678 (885)
T KOG2023|consen 599 PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEV 678 (885)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHH
Confidence 11 111111111 11 122222357889999999999888887654 8999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHH
Q 000051 1754 RDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2612)
Q Consensus 1754 R~~Al~al~~lv~~~~~~---~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~ 1830 (2612)
|..+..-++.+.+.+.+. .+..++|.+...+.-++-.+...|+-.+|++..++... .
T Consensus 679 RQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~----------------~---- 738 (885)
T KOG2023|consen 679 RQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK----------------M---- 738 (885)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh----------------h----
Confidence 999999999888776544 23457777776666666667778888888876443100 0
Q ss_pred HHHHHHhChhhHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Q 000051 1831 RAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGR 1907 (2612)
Q Consensus 1831 ~~l~~~Lg~~~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~-~~~~~R~~A~~ 1907 (2612)
..+...++..|+.. .......+-+...-++|.+.-..|..+.++++..+..-+..+.. .+.+.+..|.+
T Consensus 739 --------~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFr 810 (885)
T KOG2023|consen 739 --------KQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFR 810 (885)
T ss_pred --------hhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHH
Confidence 01223344444443 34445567777777889998889999999999888776666653 34567888999
Q ss_pred HHHHHHHHhchhhhhhHHHHH--hhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHH
Q 000051 1908 ALGELVRKLGERVLPSIIPIL--SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2612)
Q Consensus 1908 aL~~lv~~~~~~~l~~llp~L--~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2612)
.+..++...+..+...+.-+. .....++..+.|......|-..-...|......+..++
T Consensus 811 G~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 811 GLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 999888766555433322221 12233444556655554444333333443444343333
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-22 Score=282.88 Aligned_cols=1314 Identities=16% Similarity=0.150 Sum_probs=756.6
Q ss_pred HhHHHhhcCC--CHHHHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000051 1133 SGLFKALSHS--NYNVRLAAAEALATALDEYPD----------SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2612)
Q Consensus 1133 ~~Ll~~l~~~--~~~vR~~aa~ala~~~~~~~~----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2612)
..+++.|.+. +...|+.+...|..+.+..++ .++.++..|. ..+..+|.-++.+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~--------------sg~~~vk~nAaaa 81 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR--------------SGTLGAKVNAAAV 81 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc--------------CCCHHHHHHHHHH
Confidence 4566666644 567777777777777655443 3333333331 1123566666666
Q ss_pred HHHhhhh-------hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC-cch------hhhhHHHHHHHhccC
Q 000051 1201 LHSAADV-------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDN------VSLLFPIFENYLNKK 1266 (2612)
Q Consensus 1201 l~~~~~~-------~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g-~~~------~~~Llp~~~~~l~~~ 1266 (2612)
+..++.. .....++.++ ..+.+.+...|..+..++..+..... ++. ....+|.+...+...
T Consensus 82 L~nLS~~e~nk~~Iv~~GaIppLV-----~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 82 LGVLCKEEDLRVKVLLGGCIPPLL-----SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCChHHHH-----HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 6666542 1122223333 33455678899998888877654321 111 145567777777653
Q ss_pred CCChHHhhhHHhHHHHHHHHHhhhhccCCcc-h-HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh-----HHHH
Q 000051 1267 ASDEEKYDLVREGVVIFTGALAKHLAKDDPK-V-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLV 1339 (2612)
Q Consensus 1267 ~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~-~-~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~li 1339 (2612)
.. .+..+++.++..+..|+.+-+..... + ...++.++..++++++.+|..++.++..++....+.. ...+
T Consensus 157 sk---~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaV 233 (2102)
T PLN03200 157 NK---QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAV 233 (2102)
T ss_pred ch---hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence 22 22235666666777777644321111 1 2368889999999999999999888766654322211 2357
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhC--cchhhhhcHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHH
Q 000051 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADR--------NSAKRREGALLAFECLCEK 1409 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~i~~~--------~~~~~R~~Al~al~~L~~~ 1409 (2612)
+.+++.|..+++...|..|+.+|..++.+-. ...+...+.++.|.+.+... .+...++.|+.+++.++.+
T Consensus 234 P~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 234 KQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 7888877665556889999999999997421 11122234566666666532 1234477888999988865
Q ss_pred hcccchhhHH---------------------------------------HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHH
Q 000051 1410 LGRLFEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMS 1449 (2612)
Q Consensus 1410 ~~~~~~~~v~---------------------------------------~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~ 1449 (2612)
... +-+++. .+.+.+.+++.++++. +.+.+..++..++.
T Consensus 314 ~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~g 392 (2102)
T PLN03200 314 MSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYG 392 (2102)
T ss_pred chh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcC
Confidence 322 111111 1123444444444333 24444444433322
Q ss_pred hhcHH---hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000051 1450 QLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2612)
Q Consensus 1450 ~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2612)
+..-. ......+.|+..+...+-..+..++..|..++.+..+....-. ...+|.|+++|.+.+..+|..|+++++.
T Consensus 393 N~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~n 472 (2102)
T PLN03200 393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAI 472 (2102)
T ss_pred ChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 21000 0123345556666666678889999999998876554332221 3468999999999999999999999999
Q ss_pred HHhhcCC-h-hH--hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1526 VGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1526 l~~~~~~-~-~i--~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l--~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
++..-.+ . .+ ...+|.|.+.+..++..++ +|+.++.+......--...+ ...+|.|...+++.+++.+..++.
T Consensus 473 La~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~ 552 (2102)
T PLN03200 473 LTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552 (2102)
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 9863221 1 11 4679999999998888776 67777765322110001111 246788888999999999999999
Q ss_pred HHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-------chhhHHHHHHHhccCCC
Q 000051 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-------~~~ll~~L~~~L~~~~~ 1671 (2612)
++.++... ++.+ .++.+..++..+++.++..+.++++.+......+. ...-+|.|.+.+.++.
T Consensus 553 AL~nLi~~-~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs- 622 (2102)
T PLN03200 553 TLTKLVRT-ADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK- 622 (2102)
T ss_pred HHHHHHhc-cchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-
Confidence 99999764 3321 33556677888889999999999999877444321 2356788888887764
Q ss_pred HHHHHHHHHHHHHHHHHhChh----hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch-hhhHH-hHHHHHHhh
Q 000051 1672 NVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDG 1745 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~----~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~-~iip~ll~~ 1745 (2612)
...+..++..++.++..-... .....+|.++..+.+.+..++..+..++..+.......- ..++. .++|++.+.
T Consensus 623 ~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 623 EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence 557888888888887633221 125678999999999999999999999999997433221 12233 389999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000051 1746 LADENESVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2612)
Q Consensus 1746 L~d~~~~VR~~Al~al~~lv~~~~~~---~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd 1822 (2612)
+.+.+..+++.++.++..++..-... .-...+|.+.+.+.+.+.+.|..++..+..+....+ -++
T Consensus 703 L~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~~ 770 (2102)
T PLN03200 703 AKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VDD 770 (2102)
T ss_pred HhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hhH
Confidence 99999999999999998887643211 112367888888989999999999999988875421 000
Q ss_pred ccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHH--HHHHHHHHHhc--------ChhhHHHHHHHHHHHHHH
Q 000051 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA--ALHVWKTIVAN--------TPKTLKEIMPVLMNTLIS 1892 (2612)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~a--A~~~l~~l~~~--------~~~~l~~~l~~ll~~L~~ 1892 (2612)
.........| .+..|...+.-.+.+.-.. |++++..++.. .|+...--.|.-+..++.
T Consensus 771 ------~~~~~~~~~g------~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~ 838 (2102)
T PLN03200 771 ------VLKDSVQCRG------TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVR 838 (2102)
T ss_pred ------HHHHHHHHhC------cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHH
Confidence 0000111111 3344444454444444443 88888888763 123222234555777888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHh----chhh--hhhHHHHHh-hhcCCCChhHHHHHHHHHHHHHHhhChhhH-----H
Q 000051 1893 SLASSSSERRQVAGRALGELVRKL----GERV--LPSIIPILS-RGLKDPSASRRQGVCIGLSEVMASAGKSQL-----L 1960 (2612)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~----~~~~--l~~llp~L~-~~L~d~~~~vR~~a~~aL~~li~~~~~~~l-----~ 1960 (2612)
++.+.++.+...|...|..+|+.- |+-+ .+..+..+. +.+++.+.++|.+.+..|-.-...+....+ .
T Consensus 839 ~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2102)
T PLN03200 839 CLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDES 918 (2102)
T ss_pred HHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhh
Confidence 889999999999999999999642 2211 233333343 346677888888766554333332222111 2
Q ss_pred HhHhHHHHHHHHHhcCCc------HHHH----------------------------HHHHHHHHHHHHHhChhh--h--h
Q 000051 1961 SFMDELIPTIRTALCDSI------LEVR----------------------------ESAGLAFSTLFKSAGMQA--I--D 2002 (2612)
Q Consensus 1961 ~~l~~ll~~l~~~L~D~d------~~Vr----------------------------~~A~~al~~l~~~~g~~~--~--~ 2002 (2612)
.|+..++..+..++...+ .+++ ..|...+..++.+.+..- + .
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~ 998 (2102)
T PLN03200 919 GYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEA 998 (2102)
T ss_pred ccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhc
Confidence 355666666666553210 0000 012333333332211100 0 0
Q ss_pred hhHHHHHH----hccC-----CCcchHHHHH-HHHHh-hh----c---ccccccccchhhccCCc--chhHHHHHHHHHH
Q 000051 2003 EIVPTLLH----ALED-----DQTSDTALDG-LKQIL-SV----R---TTAVLPHILPKLVHLPL--SAFNAHALGALAE 2062 (2612)
Q Consensus 2003 ~ilp~Ll~----~L~~-----~~~~~~al~~-L~~il-~~----~---~~~vlp~Lip~L~~~~~--~~~~~~al~~La~ 2062 (2612)
.-+..+.+ .+.. ++..+.+... |..++ +. + .-..+|.|-+.+.+..+ ..+++++++++..
T Consensus 999 ~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~ 1078 (2102)
T PLN03200 999 GGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVC 1078 (2102)
T ss_pred ccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00111111 1110 1111222222 11111 11 0 11122322222222211 1134444443322
Q ss_pred Hh---------------------C-----------------------------------CChhhhHhhHHHHHHHhcCCC
Q 000051 2063 VA---------------------G-----------------------------------PGLNFHLGTILPALLSAMGDD 2086 (2612)
Q Consensus 2063 ~~---------------------g-----------------------------------~~l~~~l~~il~~Ll~~L~~~ 2086 (2612)
.- | -.....-.+.+|.|++.|+..
T Consensus 1079 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~ 1158 (2102)
T PLN03200 1079 NGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPI 1158 (2102)
T ss_pred cCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 00 0 000111234577777777644
Q ss_pred C--HHHHHHHHHHHHHhhhhcc-------cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh--ccHHHHH
Q 000051 2087 D--MDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV--DEAPNMI 2155 (2612)
Q Consensus 2087 ~--~~vr~~a~~al~~l~~~~~-------~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~--~~~~~il 2155 (2612)
+ +.+|..++..+..+....+ +.+.-+.+-..+....+ ......+..++..++.. .+.. .-....+
T Consensus 1159 ~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s--~s~e~a~~ElL~IL~~~--~e~~~~l~a~~~v 1234 (2102)
T PLN03200 1159 PDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQ--DSTEEAASELLRILFSS--PELRRHESAFGAV 1234 (2102)
T ss_pred cccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCc--cchhHHHHHHHHHHhCC--HHHHHHhhhhhHH
Confidence 3 3567777776666664221 11211222222222211 11233444455544411 1111 1123466
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHH
Q 000051 2156 STLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235 (2612)
Q Consensus 2156 ~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~ 2235 (2612)
..|+.++...+...|.+|..+|..+..... .+... .-...+|.|.
T Consensus 1235 ~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~----------~~~~~-------------------------~a~~ai~pLv 1279 (2102)
T PLN03200 1235 NQLVAVLRLGSRSARYSAARALQELFSAEH----------IRDSE-------------------------LARQAVQPLV 1279 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhhh----------hhhhh-------------------------hhhccchHHH
Confidence 677777777777777777777777654310 00000 0112356667
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcChhhhhh--chhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHH
Q 000051 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKE--FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2612)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p--~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpq 2313 (2612)
..+.++....+..+..+|-.+++.-....... .=...+..++++|.+..+.+.+..++..+..+........++---.
T Consensus 1280 ~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~ag 1359 (2102)
T PLN03200 1280 EMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAAR 1359 (2102)
T ss_pred HHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhC
Confidence 77777777788888888888875432111100 0114456677888887667788877777654432111111122223
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---------cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCc
Q 000051 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSAL---------STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384 (2612)
Q Consensus 2314 L~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~---------~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~ 2384 (2612)
.+..++..|.|+...++..|..+|..|... ++-..|++. .+-.......+.++.+|..+....+...
T Consensus 1360 aV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl~~~~~~v~ 1435 (2102)
T PLN03200 1360 CIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKLGKDRPPCK 1435 (2102)
T ss_pred CHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHHhCCChHHH
Confidence 566677777777677789999999998543 222333333 2222345567888888877763322222
Q ss_pred ChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh--------HHHHHHHHHHhhcCCCCchhhHHHHHHHHHH
Q 000051 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG--------QLADLLQELLNLASSPSWAARHGSVLVFATF 2456 (2612)
Q Consensus 2385 ~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~--------~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~ 2456 (2612)
.+....-+++.+.-.++...+.++..+++.+.-+.-+ +.- ...|++-.++ +.....| ..|++..+|..+
T Consensus 1436 ~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~~al~~l~~i 1512 (2102)
T PLN03200 1436 LDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNN-SSIAKGQSAAKVVEPLFLLLT-RPDLGTW-GQHSALQALVNI 1512 (2102)
T ss_pred HHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-hhhccccchhhhhHHHHHHHh-ccCccee-cHHHHHHHHHHH
Confidence 2333445556565566656788889898887655422 110 1233333333 2223333 356677777766
Q ss_pred HhhCCccccCCc-hhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHH
Q 000051 2457 LRHNPSAISMSP-LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRR 2535 (2612)
Q Consensus 2457 l~~~p~~~~~~~-~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~ 2535 (2612)
+.. |....... -....++.++..+.+.++.+++.|.++++.++....-.. +..-...++++++.+.+++...|+.
T Consensus 1513 ~e~-~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~~~~~~~~ 1588 (2102)
T PLN03200 1513 LEK-PQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIGILSLQQR 1588 (2102)
T ss_pred HhC-cchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCCChhHHHH
Confidence 653 32221111 123568888899999999999999999999887653110 0223458899999999999999999
Q ss_pred HHHHHHHHHhhCchhhhh
Q 000051 2536 ALSALKSVAKANPSAIMV 2553 (2612)
Q Consensus 2536 a~~~l~~~a~~~~~~v~~ 2553 (2612)
|+.+|......-|..|.+
T Consensus 1589 A~~aL~~~~~~w~~~v~~ 1606 (2102)
T PLN03200 1589 AVKALESISLSWPKAVAD 1606 (2102)
T ss_pred HHHHHHHhhcccHHHHHH
Confidence 999998777766666544
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-25 Score=270.71 Aligned_cols=737 Identities=16% Similarity=0.267 Sum_probs=488.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChh--HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000051 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
.+++.+|..|-.-|.++.. ..+..++..|-+.+.|++.. .|.+... .|...+..
T Consensus 12 SpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL--------------------~LKN~L~a 67 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGL--------------------QLKNSLTA 67 (859)
T ss_pred CCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhH--------------------HHhhhhcc
Confidence 4578889999888888764 34555666666666555432 3322111 12233444
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHh
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDAL 1666 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~-~g~~~~~~ll~~L~~~L 1666 (2612)
++++.+....+-+-.+-. +.. .++-..+...|..+.|..+..|+.+++.++.. ++...++++++.+....
T Consensus 68 kd~~~k~~~~qRWl~l~~------e~r---eqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv 138 (859)
T KOG1241|consen 68 KDPERKQQYQQRWLQLPA------EIR---EQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV 138 (859)
T ss_pred CCHHHHHHHHHHHHcCCH------HHH---HHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc
Confidence 555555554443322211 222 23555667888889999999999999999874 33447899999998888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhChhhH----HhHhHHHHHhccC--CChhhHhHHHHHHHHhhhhhccchhhhHH--hH
Q 000051 1667 KSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ--QV 1738 (2612)
Q Consensus 1667 ~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~~g~~f~p~l~--~i 1738 (2612)
.++.+..++.++.+++|-++....++.+ ..++..+++.... ++..||-++..+|..--...+..|..-.+ .+
T Consensus 139 ~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i 218 (859)
T KOG1241|consen 139 GEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYI 218 (859)
T ss_pred ccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhcee
Confidence 7777667889999999999999988755 4566777776543 57889988888776655555555543322 26
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc---h-hhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000051 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT---S-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2612)
Q Consensus 1739 ip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~---~-i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~ 1814 (2612)
+.........++..|+.+|+.++-.++..|-.. + .+.+++.....+++++..+...+++.-..+..
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice---------- 288 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE---------- 288 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----------
Confidence 666677777788999999999999888765432 1 12244444444555555554444433332210
Q ss_pred ccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChh---h-HHHHHHHHHHHH
Q 000051 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK---T-LKEIMPVLMNTL 1890 (2612)
Q Consensus 1815 ~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~---~-l~~~l~~ll~~L 1890 (2612)
..+ +.. .+.=...-.+.|. . -+.-++.++|.|
T Consensus 289 ----------------EEi-D~~---------------------------~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 289 ----------------EEI-DLA---------------------------IEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred ----------------HHH-HHH---------------------------HHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 000 000 0000000001110 0 012233444555
Q ss_pred HHHhc-------CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH
Q 000051 1891 ISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2612)
Q Consensus 1891 ~~~L~-------~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2612)
++.|. +.+|..-.+|..||.-+.+.+|+.++++++|++.+.+++|+|.-|..+..++|.++..-.+..+.+..
T Consensus 325 l~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV 404 (859)
T KOG1241|consen 325 LELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV 404 (859)
T ss_pred HHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence 54444 34678889999999999999999999999999999999999999999999999999877778889999
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh-----hhHHHHHHhccCCCcchHHHHHHHHHhhhccccccc
Q 000051 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID-----EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2612)
Q Consensus 1964 ~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~-----~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp 2038 (2612)
.+.+|.+...++|+.--||+.++.+|+++.+........ ..++.+++.|.++.
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP---------------------- 462 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP---------------------- 462 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc----------------------
Confidence 999999999999999999999999999998765432221 12222222222221
Q ss_pred ccchhhccCCcchhHHHHHHHHHHHhCC---------ChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc
Q 000051 2039 HILPKLVHLPLSAFNAHALGALAEVAGP---------GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG 2109 (2612)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~al~~La~~~g~---------~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~ 2109 (2612)
.+....+.++-+|++.+-. -..|+
T Consensus 463 ---------rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~-------------------------------------- 495 (859)
T KOG1241|consen 463 ---------RVASNVCWAFISLAEAAYEAAVSNGQTDPATPF-------------------------------------- 495 (859)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHhccCCCCCCccchh--------------------------------------
Confidence 1222344555555553211 11223
Q ss_pred HHHHHHHHHhhcC--C-CChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2110 VESLVSELLKGVG--D-NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~--~-~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
+..++..|++... | .+...|.+|..+|+.+.++++.+..+.+..+......-++. + .+ +.+.....+
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q----~----i~--~~~l~~~dr 565 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ----T----IS--SQILSLADR 565 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH----H----HH--HHhccHhhH
Confidence 3334444443332 1 34567777777777777777666555443333333322210 0 00 011111111
Q ss_pred cccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcChhhh
Q 000051 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSL 2265 (2612)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~-~~~~~r~~aa~~L~~li~~~~~~~l 2265 (2612)
+.+..+-..+...++..... + |-..+.....+|..|++.+.+ .+.-+.+.|..+++.++...| ..|
T Consensus 566 ~q~~eLQs~Lc~~Lq~i~rk-----------~-~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg-~~F 632 (859)
T KOG1241|consen 566 AQLNELQSLLCNTLQSIIRK-----------V-GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG-KGF 632 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------c-cccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh-HhH
Confidence 11111111112222211100 1 112334556678888887776 456678899999999999999 789
Q ss_pred hhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-Hh
Q 000051 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SA 2342 (2612)
Q Consensus 2266 ~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L-~~ 2342 (2612)
..|++.+.+-|.+.++...+..|..++....|.+++.++..+.||...+++.++++|+++ +++||.....++|.+ ..
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 999999999999999766677899999999999999999999999999999999999998 899999999999999 56
Q ss_pred ccCChhHHHHHHHHhhhcC-----C----------HHHHHHHHHHHHHHHHhcCC---C-cChHHHHHHHHHHHHhhcCC
Q 000051 2343 LSTRVDPLVGDLLSSLQVS-----D----------AGIREAILTALKGVLKHAGK---S-VSSAVKIRVYSVLKDLVYHD 2403 (2612)
Q Consensus 2343 ~~~~~~~~l~~Ll~~l~~~-----d----------~~vr~~~l~AL~~vi~~~g~---~-~~~~~~~~i~~~L~~~l~~~ 2403 (2612)
++.++++|+..++..++.. | .++|+++++|...++...+. . ...++.+.|++++...-.++
T Consensus 713 Ig~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~ 792 (859)
T KOG1241|consen 713 IGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEP 792 (859)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCc
Confidence 7888999988877766421 1 57899999999999998773 2 23589999999998877665
Q ss_pred --CHHHHHHHHHHHHHHHhhCChh
Q 000051 2404 --DDHVRVSAASILGIMSQCMEDG 2425 (2612)
Q Consensus 2404 --~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2612)
++.+...++.+||.|+..+|.+
T Consensus 793 ~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 793 DVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred ccchHHHHHHHHHHHHHHHHcccc
Confidence 4778889999999999999864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-21 Score=266.42 Aligned_cols=1350 Identities=16% Similarity=0.144 Sum_probs=735.8
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHhCC-Cc-------HHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000051 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYP-DS-------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2612)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~-~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~ 1203 (2612)
++.|+..|.+.+...|+.+|.+|..+..... |. -...+..|....... + ...--++..+..+|..
T Consensus 101 IppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g--s-----k~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG--N-----KQDKVVEGLLTGALRN 173 (2102)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC--c-----hhhHHHHHHHHHHHHH
Confidence 4678888988899999999999998865321 11 022233444332110 0 0011134445667777
Q ss_pred hhhhhCCCCh----hHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc--ch--hhhhHHHHHHHhccCCCChHHhhh
Q 000051 1204 AADVLRTKDL----PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DN--VSLLFPIFENYLNKKASDEEKYDL 1275 (2612)
Q Consensus 1204 ~~~~~~~~~~----~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~--~~--~~~Llp~~~~~l~~~~~~~~~~d~ 1275 (2612)
++..-++... ...+..++ ..+.+.++.++..+..++.......+. .. -...+|.|-+++... ....
T Consensus 174 Ls~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg-----~~~~ 247 (2102)
T PLN03200 174 LCGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG-----NEVS 247 (2102)
T ss_pred HhcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-----CChH
Confidence 7754332110 01223332 455678888888887776555443322 11 134578888888641 1236
Q ss_pred HHhHHHHHHHHHhhhhccCCcch--HhHHHHHHHhcCCCCHH---------HHHHHHhhhHHhHhhhcchhHHHHHHHHH
Q 000051 1276 VREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRLLD 1344 (2612)
Q Consensus 1276 vr~~~i~~l~~La~~l~~~~~~~--~~i~~~L~~~L~~~~~~---------Vq~~~~~~L~~lv~~~~~~~~~li~~ll~ 1344 (2612)
+|+.+.-.++.|+.+-......+ ...++.|+..+..++.+ .|+.+.-+|+.+.... ..+++.+-+
T Consensus 248 VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L~~ 323 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYLGE 323 (2102)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHHHH
Confidence 78888888888886421100000 12456677777666543 4777878887776432 345555555
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhhCcc-----hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhh-
Q 000051 1345 QLMKSDKYGERRGAAFGLAGVVKGFGIS-----SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPY- 1417 (2612)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~-----~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~-~~~~- 1417 (2612)
.+....+...--.+..++..++...... .+....+.+.|.+++++++..-+.+.+..++..+. |.. +...
T Consensus 324 ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~---gN~~l~~~L 400 (2102)
T PLN03200 324 LSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY---GNAYLSRKL 400 (2102)
T ss_pred hhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc---CChHHHHHH
Confidence 4433334443344556666664433221 12223456788888888754434555565554422 211 1111
Q ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh
Q 000051 1418 -VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2612)
Q Consensus 1418 -v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~ 1492 (2612)
-.+..+.++..+...+.+++..+..++..+...-... .-...+|.|++.|.+++-..+..++..++.++...+++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1256778888888888899999999998887542222 11457899999999888889999999999998765543
Q ss_pred hhh-hhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-h-hH--hhHHHHHHhhcCCCChhHH-HHHHHHHhcccc
Q 000051 1493 LSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFV 1566 (2612)
Q Consensus 1493 l~~-~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~ 1566 (2612)
... .-...+|.|.++|..++.++|+.|+++|++++..-.+ . .+ ...+|.|++.+.+.+...+ .++.++... .
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL--i 558 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL--V 558 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH--H
Confidence 221 1257889999999999999999999999999874211 1 12 3578889999988776665 566665542 1
Q ss_pred ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcch-hh--HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000051 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2612)
Q Consensus 1567 ~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~-~~--l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2612)
..-+. ..++.+...+...++.++..+.+.++++...... ++.. .. ....++.|.+++.++++.+++.|+.+|
T Consensus 559 ~~~d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 559 RTADA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred hccch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11122 2335566677777889999999999998775432 2211 10 135789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh---H--HhHhHHHHHhccCCChhhHh
Q 000051 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRD 1714 (2612)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~---l--~~llp~l~~~~~~~~~~vR~ 1714 (2612)
..++..-.+. ...+.+|.++..+.+.+ ...+..++++|+.+......+. + ...+|.+++.+.+.+..+++
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e 712 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAE 712 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence 9998743221 23567888888887655 4478899999999886433221 1 34688899999999999999
Q ss_pred HHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhch-h------hhhHHHHhhccCCC
Q 000051 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFND 1787 (2612)
Q Consensus 1715 ~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~-i------~~llp~L~~~l~d~ 1787 (2612)
.++.++..++..-...-.-.-...++++...+.+.++..|+.|..++..++...+.+. + ...+..+...+...
T Consensus 713 ~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~ 792 (2102)
T PLN03200 713 QAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST 792 (2102)
T ss_pred HHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC
Confidence 9999999988754321111124578999999999999999999999999887765332 1 12444555555554
Q ss_pred chHHHH--HHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHH
Q 000051 1788 NWRIRQ--SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865 (2612)
Q Consensus 1788 ~w~vR~--~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~ 1865 (2612)
+-+... .+++.+..+...=.+... .. .-+..+.+.-+ -+..+..++.+.++.+.+.|+
T Consensus 793 ~~~~~~~~~al~~l~~l~~~~~~~~~-----------~~---~~~~~~~e~p~------~l~~l~~~l~~~~p~~~~kai 852 (2102)
T PLN03200 793 DLDSSATSEALEALALLARTKGGANF-----------SH---PPWAVLAEVPS------SLEPLVRCLAEGHPLVQDKAI 852 (2102)
T ss_pred CcchhhHHHHHHHHHHHHhhcccCCC-----------CC---CchhhHHhccC------chHHHHHHHHcCChHHHHHHH
Confidence 444333 366666666542111000 00 00011111111 123333455666777777777
Q ss_pred HHHHHHHhcChhhHHHHHH---HHHHHHHHH-hcCCCHHHH---------------HHHHHHHH-------------HHH
Q 000051 1866 HVWKTIVANTPKTLKEIMP---VLMNTLISS-LASSSSERR---------------QVAGRALG-------------ELV 1913 (2612)
Q Consensus 1866 ~~l~~l~~~~~~~l~~~l~---~ll~~L~~~-L~~~~~~~R---------------~~A~~aL~-------------~lv 1913 (2612)
+++..++...|.-+..++. ..+..+..+ +++++.++| +....++. ++.
T Consensus 853 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (2102)
T PLN03200 853 EILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDML 932 (2102)
T ss_pred HHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7777777665544433332 122222221 122222222 11111111 111
Q ss_pred HHhc------------------------hh--------h-hhhHHHHHhhhcCCCChhHH-----HHHHHHHHHHHHhhC
Q 000051 1914 RKLG------------------------ER--------V-LPSIIPILSRGLKDPSASRR-----QGVCIGLSEVMASAG 1955 (2612)
Q Consensus 1914 ~~~~------------------------~~--------~-l~~llp~L~~~L~d~~~~vR-----~~a~~aL~~li~~~~ 1955 (2612)
+.-. +. . -+.+-=.|...+.+.++..| .++..++.+-+..+.
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~ 1012 (2102)
T PLN03200 933 KQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYT 1012 (2102)
T ss_pred hccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhc
Confidence 1000 00 0 00111111111111111111 122222222111110
Q ss_pred ---hhhH------------------------HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh-----hh
Q 000051 1956 ---KSQL------------------------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-----DE 2003 (2612)
Q Consensus 1956 ---~~~l------------------------~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~-----~~ 2003 (2612)
...+ .+-....+|.+-..+...+.--|.-|+++++++..+.+.... ..
T Consensus 1013 ~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~ 1092 (2102)
T PLN03200 1013 SNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSG 1092 (2102)
T ss_pred cCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhccc
Confidence 0000 111122333333444433444456666666655443221100 01
Q ss_pred hHHHHHHhccCCCc------------------chHHHHHHHHHh----hhcccccccccchhhccCCcch-hHHHHHHHH
Q 000051 2004 IVPTLLHALEDDQT------------------SDTALDGLKQIL----SVRTTAVLPHILPKLVHLPLSA-FNAHALGAL 2060 (2612)
Q Consensus 2004 ilp~Ll~~L~~~~~------------------~~~al~~L~~il----~~~~~~vlp~Lip~L~~~~~~~-~~~~al~~L 2060 (2612)
.++-++..+...+. +..+|+.|-.+= +......+|.++..|...+-+. ....|+..|
T Consensus 1093 ~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kL 1172 (2102)
T PLN03200 1093 AVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLL 1172 (2102)
T ss_pred ccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHH
Confidence 11222222211111 122333331111 1113445666666666443211 233344333
Q ss_pred HHHh-CCChhh-h--HhhHHHHHHHhcCCC-CHHHHHHHHHHHHHhhhhcccc-----cHHHHHHHHHhhcCCCChhHHH
Q 000051 2061 AEVA-GPGLNF-H--LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVIDEE-----GVESLVSELLKGVGDNQASIRR 2130 (2612)
Q Consensus 2061 a~~~-g~~l~~-~--l~~il~~Ll~~L~~~-~~~vr~~a~~al~~l~~~~~~~-----~l~~ll~~Ll~~l~~~~~~vR~ 2130 (2612)
...+ +..-++ . -...++.|...+... .......+.+.+..+. .+++ .-...++.|...++.++...|.
T Consensus 1173 r~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~--~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~ 1250 (2102)
T PLN03200 1173 TQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILF--SSPELRRHESAFGAVNQLVAVLRLGSRSARY 1250 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHHHh--CCHHHHHHhhhhhHHHHHHHHHhcCCHHHHH
Confidence 3322 111111 0 112334443333211 1112233333444332 2221 1234677888888999999999
Q ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccc-c-----cHHHHHHHHHHhhh
Q 000051 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ-P-----SYIKVIRDAISTSR 2204 (2612)
Q Consensus 2131 ~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l-~-----~lv~~l~~~l~~~~ 2204 (2612)
.|+.+|..++......-.....+.++.|..++..........++++|-.+++....... . ..+..+.+.+....
T Consensus 1251 ~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~ 1330 (2102)
T PLN03200 1251 SAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDS 1330 (2102)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhccccc
Confidence 99999998876522111112234556666666666666666666666666654321100 0 11111111111110
Q ss_pred hhhhhhhcCCcccccC--CCCC----cCc-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-hhhhhhchhhhhHHH
Q 000051 2205 DKERRKKKGGPILIPG--FCLP----KAL-QPLLPIFLQGLISGSAELREQAALGLGELIEVTS-EQSLKEFVIPITGPL 2276 (2612)
Q Consensus 2205 ~~~~~~~~~~~~~l~g--~~~p----~~l-~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~-~~~l~p~v~~i~~pL 2276 (2612)
..+.. .....+-. |..+ +.+ ...++.+++.+.++.....+.++..|..++..-. .+.+..| ....|+
T Consensus 1331 ~~~l~---~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h--~a~vpl 1405 (2102)
T PLN03200 1331 SLELK---EDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAH--GAVVPL 1405 (2102)
T ss_pred chhHH---HHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHc--CChhhH
Confidence 00000 00000000 0000 000 1256777777777666667888888888875421 1122222 233355
Q ss_pred HHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----cCChhHH
Q 000051 2277 IRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-----STRVDPL 2350 (2612)
Q Consensus 2277 i~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-----~~~~~~~ 2350 (2612)
+..+.. .+......|+.+|..++..-+......+ -..+..++-.|+......+..|+..|..+... ++...+.
T Consensus 1406 V~~ilr-vS~~a~E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~ 1484 (2102)
T PLN03200 1406 VGLVVG-TNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKV 1484 (2102)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhh
Confidence 543332 3666677788888777622211111100 11233444456667789999999988776221 2334445
Q ss_pred HHHHHHhhhcCC--HHHHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh---
Q 000051 2351 VGDLLSSLQVSD--AGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED--- 2424 (2612)
Q Consensus 2351 l~~Ll~~l~~~d--~~vr~~~l~AL~~vi~~~g~~~~~-~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~--- 2424 (2612)
+..++-.+-.+| ...+.+++++|-.+..+-...-.. --...+++.|...+++++..+++.++++++.+.....-
T Consensus 1485 ~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~ 1564 (2102)
T PLN03200 1485 VEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQD 1564 (2102)
T ss_pred hHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhh
Confidence 555554443333 456788999999998763221111 12356778888999999999999999999987643211
Q ss_pred ----hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHH
Q 000051 2425 ----GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500 (2612)
Q Consensus 2425 ----~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll 2500 (2612)
..+.|+. +++ .......++.++.+|...-..+|..+...+..-++...+...--...-.+-+.|...+..++
T Consensus 1565 ~~~~~aI~pLv-~~l---~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~ 1640 (2102)
T PLN03200 1565 ITTQNAVVPLV-RLA---GIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNIL 1640 (2102)
T ss_pred hhcccchHHHH-HHh---cCCChhHHHHHHHHHHHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHh
Confidence 1122322 233 34445568888889988878888888777776666665554110022245666777777766
Q ss_pred hhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000051 2501 LHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547 (2612)
Q Consensus 2501 ~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~ 2547 (2612)
...... +..=-++.|++.+++.+-.++..|+.+|-.++...
T Consensus 1641 ~~~~~~------~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~~~d 1681 (2102)
T PLN03200 1641 RFSSEY------YFEVPVAVLVKLLRSTSESTVVVALNALLVLERDD 1681 (2102)
T ss_pred ccCcee------EEEeeHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 654321 11125566777777777778888888887777643
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-22 Score=264.66 Aligned_cols=589 Identities=17% Similarity=0.231 Sum_probs=423.2
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC-hhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
...+...+...+.+++|..|++.|.||-.++..++ .....-..++|...+...|.|.|+-+++.|.+.++-+++..+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 34566777788889999999999999999998887 34455677889999999999999999999999999888877666
Q ss_pred hhhhhHHHHHHhccCC---------C------------cchHHHHHHHHHhhhcccccccccchhhccCC-------cch
Q 000051 2000 AIDEIVPTLLHALEDD---------Q------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLP-------LSA 2051 (2612)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~---------~------------~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~-------~~~ 2051 (2612)
.-..++..|++.|..+ + ..++.+..++++|.-.++.--|.++.+..+-. -.-
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 6677888888777321 1 12457889999998889999999998876521 111
Q ss_pred hHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhh---cccccHHHHHHHHHhhcCCCChhH
Q 000051 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASI 2128 (2612)
Q Consensus 2052 ~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~---~~~~~l~~ll~~Ll~~l~~~~~~v 2128 (2612)
.++..++.|++-+|..+.||+++++|.|.++--|++..++.++...++.++.- +.++++++++.+|+..+.+..|++
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 36778899999999999999999999999999999999999999999999863 345789999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc-cchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhh
Q 000051 2129 RRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207 (2612)
Q Consensus 2129 R~~A~~~L~~l~~~~~-~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~ 2207 (2612)
|.++|.++..+.+..+ .++.+.++++|..+++.+||-.+.||.++-.+...+.+-+-+.. ..+
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~------------d~~---- 1119 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC------------DVT---- 1119 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------ccC----
Confidence 9999999999998765 45778999999999999999999999998877776654321100 000
Q ss_pred hhhhcCCcccccCCCCCcCchhhHHHHH-HHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCH
Q 000051 2208 RRKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2612)
Q Consensus 2208 ~~~~~~~~~~l~g~~~p~~l~~ilp~l~-~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~ 2286 (2612)
-|..-.+.+..++|.++ +|+++..+++|..+..++.++++..| ..++||.+.+++.|++..+.-.+.
T Consensus 1120 -----------~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1120 -----------NGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred -----------CcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchH
Confidence 00000134556788876 57778889999999999999999998 799999999999999888764322
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHHhc--cCChhHHHHHHHHhh
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA------LGKLSAL--STRVDPLVGDLLSSL 2358 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~a------Lg~L~~~--~~~~~~~l~~Ll~~l 2358 (2612)
-.-..++.+.+.=... + ++.|..+++. ++.++.+ ...+.+++|.+.+.+
T Consensus 1188 vLnYls~r~~~~e~ea------------l-----------Dt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEA------------L-----------DTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred HHHHHHHhhhhhHHHH------------H-----------HHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1212222221110000 0 2233333332 2222211 023456778888887
Q ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh
Q 000051 2359 QVS-DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2612)
Q Consensus 2359 ~~~-d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2612)
+.+ .-+.|.+....+.-++..+|..+ .||....+..+...+.|+++.+|...+.+.|.|++.-.++....++..++.+
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~em-tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEM-TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLAD 1323 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhcccc-CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 654 24456677777777888888888 6799999999999999999999999999999999999988999999988776
Q ss_pred cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHH-HHhhhhccCCCCch-hhH
Q 000051 2438 ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR-LLLHQIQSGPANTT-VVV 2515 (2612)
Q Consensus 2438 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~-ll~~~~~~~~~~~~-~l~ 2515 (2612)
+..+....+..+..++..+..+.++.+ .++...+++.++=.+.++ +.+.+-+-+ +.....+.+.+..+ +..
T Consensus 1324 ~l~k~es~~siscatis~Ian~s~e~L--kn~asaILPLiFLa~~ee-----~Ka~q~Lw~dvW~e~vsggagtvrl~~~ 1396 (1702)
T KOG0915|consen 1324 LLGKDESLKSISCATISNIANYSQEML--KNYASAILPLIFLAMHEE-----EKANQELWNDVWAELVSGGAGTVRLYLL 1396 (1702)
T ss_pred HhccCCCccchhHHHHHHHHHhhHHHH--HhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHhCCCCcchhhhhHH
Confidence 544333323222222323666666655 356777888776544433 122222222 11111111222111 334
Q ss_pred HHHHHHH-hhcCCCCHHHHHHHHHHHHHHHhhCchhhh-hhHhHHHHHHHhhhcC
Q 000051 2516 DILASVV-SALHDDSSEVRRRALSALKSVAKANPSAIM-VHVALFGPALAECLKD 2568 (2612)
Q Consensus 2516 ~~l~~~~-~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~-~~l~~l~p~l~~~~~~ 2568 (2612)
+.+.... ...++.++-+|..++.+++..|..-...+. |....+.+.+..++..
T Consensus 1397 eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~G 1451 (1702)
T KOG0915|consen 1397 EILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNG 1451 (1702)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhc
Confidence 4444444 456788899999999999999987554443 5666666766666654
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-22 Score=238.95 Aligned_cols=644 Identities=14% Similarity=0.155 Sum_probs=431.6
Q ss_pred ChHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCcchh-----------------hhhhhheee-cCCchHHHH
Q 000051 1055 QPNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIE-----------------VSTSLWIAV-HDPEKSVAE 1115 (2612)
Q Consensus 1055 ~~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~ 1115 (2612)
+..|+.+|.++ .+|||+++|..++.+|.+.... ++..++. ....+.++. |..+++..+
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~---dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~ 78 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSG---DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQK 78 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhccc---cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 34578888877 6999999999999999886521 1111222 222223333 333444444
Q ss_pred HHHHHHHhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 000051 1116 AAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2612)
Q Consensus 1116 la~~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 1192 (2612)
-+...|.....+.++.. ...+.+|.++.+..-.+||+.++++++ +-| ..||+++..+.... ++ ..+..
T Consensus 79 ~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv----g~-----eqp~~ 149 (858)
T COG5215 79 GCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV----GD-----EQPVS 149 (858)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc----cc-----cCchH
Confidence 46788988777776666 566789999999999999999999875 333 37787777766432 22 23445
Q ss_pred hhhHHHHHHHHhhhhhCCCChh----HHHHHHHhhhcC-CCcHHHHHHHHHHHHH-HHHhhCc----chhhhhHHHH-HH
Q 000051 1193 GRQGIALALHSAADVLRTKDLP----VIMTFLISRALA-DTNADVRGRMLNAGIM-IIDKHGR----DNVSLLFPIF-EN 1261 (2612)
Q Consensus 1193 ~R~~~~~al~~~~~~~~~~~~~----~i~~~li~~~l~-d~~~~VR~~~~~a~~~-~i~~~g~----~~~~~Llp~~-~~ 1261 (2612)
++.....+++|.++.-.++++. .++-.++.+++. .++..||.+++.|+.. .+-..|. ..++.+|.+. +.
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh
Confidence 6777888899998876664432 233334445654 4688999999999876 2222222 2345555543 33
Q ss_pred HhccCCCChHHhhhHHhHHHHHHHHHhh-hhccCCcchHh-HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhh--------
Q 000051 1262 YLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-------- 1331 (2612)
Q Consensus 1262 ~l~~~~~~~~~~d~vr~~~i~~l~~La~-~l~~~~~~~~~-i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~-------- 1331 (2612)
+-. .+.++..+++.++..|-. |+.--.+++.. +......+++.++++|...+.+--+.+....
T Consensus 230 tq~-------~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 230 TQG-------NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred ccC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 222 234567777766666542 22111233333 4455567888999999887776543333211
Q ss_pred --c-----------chhHHHHHHHHHHhhcC------CChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCC
Q 000051 1332 --Q-----------DEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNS 1392 (2612)
Q Consensus 1332 --~-----------~~~~~li~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~ 1392 (2612)
+ ....+.+|.+++.|.++ ++|...+.|+.||...++..|...+. ++..++.+.++++ +
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~ 379 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-S 379 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-h
Confidence 1 01246889999999873 47999999999999999999999887 6999999999998 8
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH----Hh-HHhHHHHHHhh
Q 000051 1393 AKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----QG-VKLVLPSLLKG 1466 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~----~~-v~~ilp~Ll~~ 1466 (2612)
|+.|++|+++||.+.++.. ....+++.+.+|.++..+.|+.-.|++.+..|++.+++.++. .+ +.......+.+
T Consensus 380 w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 380 WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459 (858)
T ss_pred hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh
Confidence 9999999999999998765 446788999999999999999999999999999999876543 22 12333334444
Q ss_pred hcCCChhhHHHHHHHHHHHHhh-------CchhhhhhhchhHHHHhhhh--cCCCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1467 LEDKAWRTKQSSVQLLGAMAYC-------APQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1467 L~~~~w~~r~~a~~~L~~ia~~-------~p~~l~~~L~~ivp~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
+.+. .+.-..+++....++.+ .+..+.+.++.|+..|++.- .+.+...|.++..+|+.+....++. +.+
T Consensus 460 l~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~-V~~ 537 (858)
T COG5215 460 LMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA-VSD 537 (858)
T ss_pred hhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh-HHH
Confidence 4432 22222333333333333 24456677788888777653 3556778999999999998876532 222
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
++-.+..... ++..+|+..+.+. ...-+... -.++...-+..+..+.+. .+.++.+.-
T Consensus 538 ~~a~~~~~~~---~kl~~~isv~~q~--l~~eD~~~---------------~~elqSN~~~vl~aiir~--~~~~ie~v~ 595 (858)
T COG5215 538 ILAGFYDYTS---KKLDECISVLGQI--LATEDQLL---------------VEELQSNYIGVLEAIIRT--RRRDIEDVE 595 (858)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhhh--hhhHHHHH---------------HHHHHHHHHHHHHHHHHh--cCCCcccHH
Confidence 2222222111 1122333332210 00000000 124555556666666663 345788888
Q ss_pred hhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh
Q 000051 1618 GLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~ 1693 (2612)
+++|..+.+.+... ...+-.....+++++...+|+. |.+.++|++...+.. .+..+-..+.--++.+...+|.+.
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999876 3456678889999999988865 778999999998843 334344455555788899999874
Q ss_pred H---HhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhh
Q 000051 1694 F---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2612)
Q Consensus 1694 l---~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~ 1745 (2612)
. +.++..+.+.++++ +..+|...+++|+.++..+|..|.+|++.++-.+.+.
T Consensus 675 ~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa 731 (858)
T COG5215 675 NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3 67788888888775 6779999999999999999999999999988776654
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-20 Score=229.37 Aligned_cols=675 Identities=18% Similarity=0.243 Sum_probs=469.8
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcc-hhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccC
Q 000051 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294 (2612)
Q Consensus 1216 i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~-~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~ 1294 (2612)
+++.|+ -..+..+..|..+++.+..-...+|.. .++.++|++.+ .. -+|.-|+..+..+.++--.++..
T Consensus 365 i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs------~t--LeDqerhllVkvidriLyklDdl 434 (1172)
T KOG0213|consen 365 IMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMS------PT--LEDQERHLLVKVIDRILYKLDDL 434 (1172)
T ss_pred HHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcC------cc--ccchhhhhHHHHHHHHHHhhccc
Confidence 444442 246677888999999888777777765 35666665432 11 12334666666666665555432
Q ss_pred -CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcch
Q 000051 1295 -DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2612)
Q Consensus 1295 -~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2612)
.|++..|+-.+-..+-+++.-.|...-+.++.+....+ ....+..+-..+. ..|.-+|...+.+.+.+++.+|...
T Consensus 435 vrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDid-n~deYVRnttarafavvasalgip~ 511 (1172)
T KOG0213|consen 435 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDID-NKDEYVRNTTARAFAVVASALGIPA 511 (1172)
T ss_pred chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCcc-cccHHHHHHHHHHHHHHHHHhCcHH
Confidence 57777766666667778877777777677776665544 2222222222222 2244579999999999999999764
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000051 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2612)
Q Consensus 1374 l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2612)
+.++|+..+.++++|..|+.++.+...++.-.|...-||+..++..+-.++.|....||-.++.++..+++...+
T Consensus 512 -----llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 512 -----LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred -----HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC
Confidence 578899999999899999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhH---HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCch---hhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1454 QGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ---QLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1454 ~~v---~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~---~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
+++ ..++.+|.+++....- ++-..+|.++.+.+|. ....++ ..++-.+.+-.+.++.+.++...+.+.++
T Consensus 587 ygie~fDsVlkpLwkgir~hrg---k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qc 663 (1172)
T KOG0213|consen 587 YGIEQFDSVLKPLWKGIRQHRG---KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQC 663 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHccC---hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 864 7788888877653221 1123445566665543 222222 35555666777788888888888888888
Q ss_pred HhhcC-Chh-H-hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000051 1527 GSVIK-NPE-I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2612)
Q Consensus 1527 ~~~~~-~~~-i-~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l 1603 (2612)
+...+ ++. + ..++|.++... +.-|.|++ .++ -+...+.-..+
T Consensus 664 c~t~Gv~~~y~r~dilp~ff~~f----w~rrmA~d----------------------------rr~---ykqlv~ttv~i 708 (1172)
T KOG0213|consen 664 CATDGVEPAYIRFDILPEFFFSF----WGRRMALD----------------------------RRN---YKQLVDTTVEI 708 (1172)
T ss_pred hcccCCCHHHHhhhhhHHHHhhh----hhhhhhcc----------------------------ccc---hhhHHHHHHHH
Confidence 76544 232 2 45555555432 11111110 011 01111222334
Q ss_pred hhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCCHHHHHHH
Q 000051 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGA 1678 (2612)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-----~~ll~~L~~~L~~~~~~~~R~~a 1678 (2612)
|..++. +.++..+..-+.|..+..|...+.++..+...+|..-+ ..++..++..++.++.. + .-.
T Consensus 709 a~KvG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-d-~vm 778 (1172)
T KOG0213|consen 709 AAKVGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-D-SVM 778 (1172)
T ss_pred HHHhCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-h-hhh
Confidence 544444 23555556666788888999999999999888885422 35566666666654432 1 234
Q ss_pred HHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch-hhhHHhHHHHHHhhcCCCChhHH
Q 000051 1679 AQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLADENESVR 1754 (2612)
Q Consensus 1679 a~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~~iip~ll~~L~d~~~~VR 1754 (2612)
..+++.+...+|.. ++..+...++..++++.+.+|+.+..+++.++..+...- ...+..+=-.++.+|..+.++|-
T Consensus 779 l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 779 LLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred hhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHH
Confidence 56788888888863 667888888899999999999999999999987665320 12334444567889999999999
Q ss_pred HHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHH
Q 000051 1755 DAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2612)
Q Consensus 1755 ~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~ 1830 (2612)
-..+.|+..++...+-+ .+..++|.+.-.+.+.+.++...++.++|.+...-+ + +
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp--------------E-~------ 917 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP--------------E-Y------ 917 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc--------------c-c------
Confidence 99999999998877543 456788998888899999999999999998853311 1 1
Q ss_pred HHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910 (2612)
Q Consensus 1831 ~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~ 1910 (2612)
.+...+-++.-.|...+...+..+|++|...++.++..-+. ..++..|++.|+..+...|....-+++
T Consensus 918 ------v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIa 985 (1172)
T KOG0213|consen 918 ------VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIA 985 (1172)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhh
Confidence 11111223333333445556788999999999999986654 134555666677667777877777777
Q ss_pred HHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000051 1911 ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990 (2612)
Q Consensus 1911 ~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~ 1990 (2612)
-+.+.+|+. .++|.|..-.+.|+.+|++|++.+++-+.+..+ +.-.+|+-.+.|.+..++.|.|..-|..|..++.
T Consensus 986 IVaE~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 986 IVAETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred hhhhhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHH
Confidence 777776653 567788877888999999999999998887765 4456788999999999999999999999887776
Q ss_pred HHH
Q 000051 1991 TLF 1993 (2612)
Q Consensus 1991 ~l~ 1993 (2612)
.+.
T Consensus 1062 Hl~ 1064 (1172)
T KOG0213|consen 1062 HLA 1064 (1172)
T ss_pred HHh
Confidence 553
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-19 Score=237.98 Aligned_cols=825 Identities=17% Similarity=0.226 Sum_probs=511.6
Q ss_pred HHHHhCCCCHHHHH-HHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHH
Q 000051 1384 REGLADRNSAKRRE-GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2612)
Q Consensus 1384 ~~~i~~~~~~~~R~-~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~ 1462 (2612)
....++. .|.+|- .++.++-.+....+..+..+..+.+-.+...+.+.....|..+...................+-.
T Consensus 540 ~~~~q~~-~~~vr~~~~l~~~~~~~s~~pE~~~~~~~~~~~~~~sll~~~~~~mr~~~a~~y~~~~~~~~~~e~~~~l~~ 618 (1702)
T KOG0915|consen 540 TSAEQHA-VASVRIVSALECLYTVVSYAPEMVALKFSDKIEWLRSLLSNTSESMRESVAQLYGMASCALSDAESCSELSN 618 (1702)
T ss_pred HHHHHHH-HHHhhhhHHHHHHHHHHhhhhHHhhHhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3334433 344554 34555555666677777777788888888899999999999988887777665555544333333
Q ss_pred HHh-hhcCCChhhHHHHHHHHHHHHhhC----chhhhhhhchhHHHHhhhhcCCC--HHHHHHHHHHHHHHHhhcC----
Q 000051 1463 LLK-GLEDKAWRTKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLTDTH--PKVQSAGQTALQQVGSVIK---- 1531 (2612)
Q Consensus 1463 Ll~-~L~~~~w~~r~~a~~~L~~ia~~~----p~~l~~~L~~ivp~L~~~L~D~~--~~VR~aA~~aL~~l~~~~~---- 1531 (2612)
++. .++.+....+++.+..+|-...++ +......=...+|.+.+.+++-. +-+..++..++..+...-.
T Consensus 619 ~i~~~~~~~~le~~hg~l~~~g~~~~~~la~~~t~~~~i~~~a~~~~v~~v~~le~a~~l~s~~~~~~~~id~~~~i~~~ 698 (1702)
T KOG0915|consen 619 LISNILQPKKLEAQHGGLLAVGFTSARCLARIKTVSKAITQIALPYLVNVVNSLEEAPLLASAAVEALSHIDKTGAIPNL 698 (1702)
T ss_pred HHHhhccccccchhhheeeeeecccccchhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHhhhccccccchh
Confidence 333 334444556666665554332211 11000000112233333333211 1355555555554443210
Q ss_pred --------------Chh----H--h--hHHHHHHhhcCCCChh--HH-HHHHHH--------------------------
Q 000051 1532 --------------NPE----I--A--SLVPTLLMGLTDPNDH--TK-YSLDIL-------------------------- 1560 (2612)
Q Consensus 1532 --------------~~~----i--~--~ivp~Ll~~l~d~~~~--~r-~al~~L-------------------------- 1560 (2612)
.+. . + ..+..+++.+.++... .+ .++..+
T Consensus 699 ~~~~~~~~~~~~~~~~~~sk~~s~~kv~~~glll~~i~s~~~~~~~~e~~l~yl~~g~g~~~~~~l~~~~l~~s~~~k~~ 778 (1702)
T KOG0915|consen 699 VADSSLGTQVREDSQERLSKLLSGDKVQKFGLLLQHICSSKASSKILEIALGYLFSGSGDKAEEILFAAGLALSFLWKQV 778 (1702)
T ss_pred HhhhcccccccCCCccccccccccchhhhHHHHHhhhcChhhhhhHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHhcc
Confidence 000 0 0 1222333333222110 00 011000
Q ss_pred --------------Hhc--cccc--------cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1561 --------------LQT--TFVN--------TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1561 --------------~~~--~~~~--------~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
+.+ .+.. ...+.....+...+.+.+.++++..|.+.+-++-.+...++..+.....
T Consensus 779 ~l~~~i~e~~~~~~~~~ds~~le~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~ 858 (1702)
T KOG0915|consen 779 PLTFDIGEAINYTALGTDSNFLEEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLM 858 (1702)
T ss_pred chHHHHHHHhhhhhcccchhhcccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhc
Confidence 000 0000 0112333446666777888999999999999998888887766777778
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHH---------------------HH
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV---------------------ER 1675 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~---------------------~R 1675 (2612)
.+.+...+...|.|++.-++..|.+.+|-+.+.-+.+.-..++..|+++|....... -.
T Consensus 859 ~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~ 938 (1702)
T KOG0915|consen 859 LKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGK 938 (1702)
T ss_pred cHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCc
Confidence 888999999999999999999999999987775555556778888888776422110 00
Q ss_pred HHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHH
Q 000051 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754 (2612)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR 1754 (2612)
....+.|..++..+|. ++++-.+++.+++ ..|..|.|+..-|+.++...|...+||+.+++|.++.+=-|++..|+
T Consensus 939 isTYKELc~LASdl~q---PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen 939 ISTYKELCNLASDLGQ---PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred chHHHHHHHHHhhcCC---hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence 1111223333333333 3456667777775 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHH
Q 000051 1755 DAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2612)
Q Consensus 1755 ~~Al~al~~lv~~---~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~ 1831 (2612)
.+.......++.. .-+++...++.+|..++.+.-||+|.+++-.+.+++..- +-+
T Consensus 1016 ~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~-------------~~~--------- 1073 (1702)
T KOG0915|consen 1016 DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGR-------------PFD--------- 1073 (1702)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCC-------------ChH---------
Confidence 8877666666532 233456668888888999999999999999999998431 000
Q ss_pred HHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911 (2612)
Q Consensus 1832 ~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~ 1911 (2612)
.+. +...+++..+|..++|....||++|-.....+ ..++-++.|...
T Consensus 1074 ~~~-----e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~l----------------sKl~vr~~d~~~------------ 1120 (1702)
T KOG0915|consen 1074 QVK-----EKLPELWEAAFRVMDDIKESVREAADKAARAL----------------SKLCVRICDVTN------------ 1120 (1702)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhhhcccCC------------
Confidence 111 23457888888888998888988876654322 122222222210
Q ss_pred HHHHhchhhhhhHHHHHhh-hcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHH-H----
Q 000051 1912 LVRKLGERVLPSIIPILSR-GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRES-A---- 1985 (2612)
Q Consensus 1912 lv~~~~~~~l~~llp~L~~-~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~-A---- 1985 (2612)
..-|..++..++|.+.. ++-+..+++|..++..+..+..+.| ..+.+|.+.++|.+..+...-.+.|-.. +
T Consensus 1121 --~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~ 1197 (1702)
T KOG0915|consen 1121 --GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLI 1197 (1702)
T ss_pred --cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchHHHHHHHHhhh
Confidence 00123356777887764 5558889999999999999876554 5789999999999999887655544321 2
Q ss_pred ---HHHHHHHH-----------------HHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhc
Q 000051 1986 ---GLAFSTLF-----------------KSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045 (2612)
Q Consensus 1986 ---~~al~~l~-----------------~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~ 2045 (2612)
..++++.- .+.....+++++|.+.+.++.+- .
T Consensus 1198 ~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-------------------g--------- 1249 (1702)
T KOG0915|consen 1198 NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-------------------G--------- 1249 (1702)
T ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-------------------C---------
Confidence 22222221 11112222222222222222111 0
Q ss_pred cCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCC
Q 000051 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125 (2612)
Q Consensus 2046 ~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~ 2125 (2612)
-+.....+..+..|+.-.|.++.||.+.++..++..+.|.++.+|..-..|++.++..-.++....++..+...+-.+.
T Consensus 1250 -l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~ 1328 (1702)
T KOG0915|consen 1250 -LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKD 1328 (1702)
T ss_pred -CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccC
Confidence 1122346777888888899999999999999999999999999999999999999987777778888888887775555
Q ss_pred hhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST---TVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~---V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
+..+..+|..+..|..+....+..|...++|..+-...+.+.+ .....|.. +
T Consensus 1329 es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e-----------------------~-- 1383 (1702)
T KOG0915|consen 1329 ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAE-----------------------L-- 1383 (1702)
T ss_pred CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------h--
Confidence 5555777777777888888888899999999887766543211 11111110 0
Q ss_pred hhhhhhhhhcCCcccccCCC--CCcCchhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH
Q 000051 2203 SRDKERRKKKGGPILIPGFC--LPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~--~p~~l~~ilp~l~~~L~~-~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~ 2279 (2612)
++|-. ++-+...++-.+++...+ ..+..|.+++.++..++..+....-.|+...+...+...
T Consensus 1384 ---------------vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~ 1448 (1702)
T KOG0915|consen 1384 ---------------VSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDT 1448 (1702)
T ss_pred ---------------CCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHH
Confidence 11111 011223344444444444 458899999999999887776333447777777667777
Q ss_pred hcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340 (2612)
Q Consensus 2280 l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L 2340 (2612)
+..+ .|+-|...+.++.....++...+..-.|.+.....+.....+...+..+..+.|..
T Consensus 1449 L~GR-iwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr~~~~y~~~ala~~~~~ 1508 (1702)
T KOG0915|consen 1449 LNGR-IWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVSRREAKYKIMALAGAGLA 1508 (1702)
T ss_pred hhcc-ccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHHHHhHHHHHHHhhhHHH
Confidence 7776 78888888888887666655544443443333333333333344444444444443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-20 Score=226.11 Aligned_cols=719 Identities=15% Similarity=0.221 Sum_probs=489.5
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHh
Q 000051 1428 AFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2612)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~ 1505 (2612)
..++..+..|..+...+..=...+... -+++++|.+++. |+++ .|+--+.++..+.+...+...++..+|+-.+-
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDq---erhllVkvidriLyklDdlvrpYVhkILvVie 447 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQ---ERHLLVKVIDRILYKLDDLVRPYVHKILVVIE 447 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccch---hhhhHHHHHHHHHHhhcccchhceeeeEEEee
Confidence 446777888888766665555555443 458888887763 5443 46777888888888877777777777766666
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhHhhHHHHH
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~i~~~~l~~iip~L 1581 (2612)
.++-|.+...|....+.|.++++..+ +..++..+-.-+.+.++++|+ +...+. ++--.+.+.|.|
T Consensus 448 pllided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafavva--------salgip~llpfL 516 (1172)
T KOG0213|consen 448 PLLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAVVA--------SALGIPALLPFL 516 (1172)
T ss_pred cceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHHHH--------HHhCcHHHHHHH
Confidence 78889999999998888888887655 223333333333444566763 222221 122345678888
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000051 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2612)
Q Consensus 1582 ~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~---~~~~~ 1657 (2612)
.....++ +|+-|..+..++..+|..++- ...||+..++..+...+.|....||..++.+++.+++..++ +.|+.
T Consensus 517 kavc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDs 594 (1172)
T KOG0213|consen 517 KAVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDS 594 (1172)
T ss_pred HHHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHH
Confidence 8877776 999999999999999988765 68899999999999999999999999999999999998765 46888
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh----HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1658 ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~----l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
++..|.+....+.+. .-.....+++-++.-...++ -.++|-.+..-.++++.+.+...+..+...|..-|-+ ..
T Consensus 595 VlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~ 672 (1172)
T KOG0213|consen 595 VLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PA 672 (1172)
T ss_pred HHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HH
Confidence 888888887766533 23334455565555444442 2456667777888999999999999999999887753 22
Q ss_pred hH-HhHHHHHHhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1734 YL-QQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1734 ~l-~~iip~ll~~L~d~~~~VR~~Al---------~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
|+ .+++|.++.... .|..|+ ..-..++...| .+.++..+...+.|++...|.-.++.+..++
T Consensus 673 y~r~dilp~ff~~fw-----~rrmA~drr~ykqlv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~ 744 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFW-----GRRMALDRRNYKQLVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIV 744 (1172)
T ss_pred HHhhhhhHHHHhhhh-----hhhhhccccchhhHHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHH
Confidence 33 457788776543 222222 11112222222 2234444555667788777777777766665
Q ss_pred HHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH
Q 000051 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883 (2612)
Q Consensus 1804 ~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2612)
..++.. |-+ ..+.+ +++..++..+.+....+. ..+..++.++...+...++|+
T Consensus 745 ~~lg~~-----------did-------erleE--------~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpyl 797 (1172)
T KOG0213|consen 745 GRLGAA-----------DID-------ERLEE--------RLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYL 797 (1172)
T ss_pred hccccc-----------ccc-------HHHHH--------HHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccch
Confidence 433211 000 11111 122222222211111111 345677778887887788999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---chh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhH
Q 000051 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKL---GER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2612)
Q Consensus 1884 ~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~---~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l 1959 (2612)
|.+...++.+|+++.+.+|+.|+..++.++..+ ++. .+.++=-+|.+.+....+++--..+.++..|...++-..+
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999887654 333 6677777888899999999988888888887777665556
Q ss_pred HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhccccccc
Q 000051 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2612)
Q Consensus 1960 ~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~-~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp 2038 (2612)
.+-...++|.+...|.+.+..|.++....++.++...... ...+...... .-+..+.+.+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-------------eLlelLkahk------ 938 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-------------ELLELLKAHK------ 938 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-------------HHHHHHHHHH------
Confidence 6667888999999999999999999999999998753321 1122211111 1111111000
Q ss_pred ccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHH
Q 000051 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2612)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll 2118 (2612)
..+.-.+...+|.|++..|+ ..++..|++.|+..+...|....-+++.+...++ .-.++|.|+
T Consensus 939 --------K~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~---pFtVLPalm 1001 (1172)
T KOG0213|consen 939 --------KEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG---PFTVLPALM 1001 (1172)
T ss_pred --------HHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC---chhhhHHHH
Confidence 11222356789999998887 3688888998887777777666656655554433 457899999
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2119 ~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
.-.+-++..++...+.++..+|+..+..-.+|+-.+.+.|...+-|.|..-|+.|..++..+.-..+
T Consensus 1002 neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~------------- 1068 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP------------- 1068 (1172)
T ss_pred hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC-------------
Confidence 9999999999999999999999998887788888899999999999999889888888777654422
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v 2269 (2612)
|+.....+..++..+--.+...+|.+.....+|+..+....|+..+-.|+
T Consensus 1069 ---------------------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1069 ---------------------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred ---------------------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 22111112222333333344556666666777777777777766665553
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=239.81 Aligned_cols=471 Identities=22% Similarity=0.327 Sum_probs=355.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCC
Q 000051 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670 (2612)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~ 1670 (2612)
.+|....-..|.++... ...+.. ...++..+...+..|.+.+|.+...|+..+........-..+.+.+.+.+. ..
T Consensus 71 ~~~~~~~v~~~~~a~~~-~~~d~~--~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~ 146 (569)
T KOG1242|consen 71 NLRNNVVVLEGTLAFHL-QIVDPR--PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT-ST 146 (569)
T ss_pred HHhhhhHHHHHHHHHhc-cccCcc--hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-cc
Confidence 44444444445555432 222323 335788888889999999999999999999887665555556666666666 34
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhH--HhHhHHHHHhccCCC-hhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1671 SNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~l~~~~~~~~-~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
....|.+++.+++.+..+.|.+.+ ..++..+.....+.+ ...|++++.++......+|..|+||+..++|.++..+.
T Consensus 147 ~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~ 226 (569)
T KOG1242|consen 147 KIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG 226 (569)
T ss_pred cHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh
Confidence 466899999999999999888766 456777777777764 45566899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchH
Q 000051 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2612)
Q Consensus 1748 d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~ 1827 (2612)
|..+.||.++..+...++..+...+++.++|.+...+.+..||...++++++|.+.+..+
T Consensus 227 d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap-------------------- 286 (569)
T KOG1242|consen 227 DKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP-------------------- 286 (569)
T ss_pred ccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch--------------------
Confidence 999999999999999999999999999999999999988899999999999998875532
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000051 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2612)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~ 1907 (2612)
..+. ....++++.+-..++|+..+||+++..++..+...... +-+..++|.++.++++++..+.. +..
T Consensus 287 ---~qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e-~~~ 354 (569)
T KOG1242|consen 287 ---KQLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPE-CLD 354 (569)
T ss_pred ---HHHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHH-HHH
Confidence 1121 13456777777788999999999999998887763322 12455566777888887733332 222
Q ss_pred HHH--HHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-ChhhHHHhHhHHHHHHHHHhcCCcHHHHHH
Q 000051 1908 ALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEVRES 1984 (2612)
Q Consensus 1908 aL~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~-~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~ 1984 (2612)
.|+ .++..+.+..+.-++|++.+++.+.+...+..++..++.+.... .+..+.+|++.++|.+...+.|+.|+||..
T Consensus 355 ~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 355 SLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred hhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence 222 34444556678899999999999999999999999999887777 677889999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhhhhhHHHHHHhccCCC---cchHHHHHHHHHhhhcccccccccchhhccC--------CcchhH
Q 000051 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILPKLVHL--------PLSAFN 2053 (2612)
Q Consensus 1985 A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~al~~L~~il~~~~~~vlp~Lip~L~~~--------~~~~~~ 2053 (2612)
++++++.+.+..|...++..+|.+.+.+.++. ....+.+.+.+++...+.......+|..... .+....
T Consensus 435 aarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~ 514 (569)
T KOG1242|consen 435 AARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGV 514 (569)
T ss_pred HHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCe
Confidence 99999999999999888999999999886543 2356677777777543333333333322210 111111
Q ss_pred HHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000051 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2612)
Q Consensus 2054 ~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~a 2097 (2612)
...+..+....|..+.+|+..+++.+.+.+.+.++..+..+.++
T Consensus 515 ~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 515 IWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred eehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 22333344456777889999999999998888777776665544
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-17 Score=198.68 Aligned_cols=665 Identities=14% Similarity=0.197 Sum_probs=422.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-CCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH----
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF---- 1694 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~-g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l---- 1694 (2612)
+-....+.|.++.|..-..|+..++.++..- +...+++++..+.....++.+...++.+...++..+....++.+
T Consensus 95 vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 95 VKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 4455667888999999999999999999843 33467888888887777777777888888889999888877644
Q ss_pred HhHhHHHHHhcc--CCChhhHhHHHHHHHHhhhhhccchhh--hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh
Q 000051 1695 EHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2612)
Q Consensus 1695 ~~llp~l~~~~~--~~~~~vR~~~~~~l~~L~~~~g~~f~p--~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~ 1770 (2612)
..++-.+..... .++..+|-.++.++..-.....+.|.. -...++.........+++++..++..++..++..|-+
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334445555443 357789988888877644444433321 1233666666677778889999999999888765432
Q ss_pred c---hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHH
Q 000051 1771 T---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2612)
Q Consensus 1771 ~---~i~~-llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl 1846 (2612)
. +.+. +.....+++.+.+.++...+++.-..+... + ...+.....+
T Consensus 255 fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE--------------e----------------id~~~e~~~~ 304 (858)
T COG5215 255 FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE--------------E----------------IDGEMEDKYL 304 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--------------H----------------hhhHHHHhhc
Confidence 2 1111 222233444455555554444443333210 0 0000000000
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHhcC---hhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhchhh
Q 000051 1847 AALYMVRSDVSLSVRQAALHVWKTIVANT---PKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERV 1920 (2612)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~---~~~l~~~l~~ll~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~~~ 1920 (2612)
.... +.+. .......+|.++..+.+.=. +.+|.....|..||.-+.+..|+.+
T Consensus 305 -------pe~p--------------~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i 363 (858)
T COG5215 305 -------PEVP--------------AQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKI 363 (858)
T ss_pred -------ccCc--------------hhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHh
Confidence 0000 0000 01234456666666554322 3468889999999999999999999
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000051 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2612)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~ 2000 (2612)
+..++.++.+.+++++|.-|..+..++|.++..-....+.+++++.+|.+...+.|+.--|++.++.||+.+.+++...
T Consensus 364 ~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~- 442 (858)
T COG5215 364 MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI- 442 (858)
T ss_pred HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-
Confidence 8889999999999999999999999999998876667788899999999999999999999999999999997764321
Q ss_pred hhhh--HHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCc-chhHHHHHH----HHHHHh---CCChhh
Q 000051 2001 IDEI--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAHALG----ALAEVA---GPGLNF 2070 (2612)
Q Consensus 2001 ~~~i--lp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~-~~~~~~al~----~La~~~---g~~l~~ 2070 (2612)
+++- ++... ...+.+ +.+.|. ......+.- -++++. .+-+.+
T Consensus 443 i~p~~Hl~~~v---------sa~liG-------------------l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~ 494 (858)
T COG5215 443 ISPCGHLVLEV---------SASLIG-------------------LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAK 494 (858)
T ss_pred cCccccccHHH---------HHHHhh-------------------hhccchHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence 1110 01000 011111 111221 111112222 233322 233566
Q ss_pred hHhhHHHHHHHhc--CCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh
Q 000051 2071 HLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2612)
Q Consensus 2071 ~l~~il~~Ll~~L--~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~ 2148 (2612)
+...|+..|+..- ...+...|..+..+++.++.-..+ .+.+++..+.....
T Consensus 495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-~V~~~~a~~~~~~~-------------------------- 547 (858)
T COG5215 495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD-AVSDILAGFYDYTS-------------------------- 547 (858)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHH--------------------------
Confidence 6677777776643 344455676777777766653322 11111111111100
Q ss_pred ccHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCC
Q 000051 2149 DEAPNMISTLIVLLSDS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224 (2612)
Q Consensus 2149 ~~~~~il~~L~~ll~d~----d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p 2224 (2612)
..+.+.+..+-..+.-. .++++.+-+..|..++.+.+.+. .
T Consensus 548 ~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i-----------------------------------e 592 (858)
T COG5215 548 KKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI-----------------------------------E 592 (858)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------------------------------c
Confidence 00111111111111111 12344444444444444333211 0
Q ss_pred cCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhc
Q 000051 2225 KALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303 (2612)
Q Consensus 2225 ~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~ 2303 (2612)
..-..+|..|++.+.+. ..........+|+.+....+ +.|..|++.+++-|.+.++. .+..+...+...+|.|.+.+
T Consensus 593 ~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl 670 (858)
T COG5215 593 DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHh
Confidence 11123566666666654 33445667888899888887 78999999999999999965 47779999999999999999
Q ss_pred CCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhcC-------C--------HHH
Q 000051 2304 GIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQVS-------D--------AGI 2365 (2612)
Q Consensus 2304 ~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~Ll~~l~~~-------d--------~~v 2365 (2612)
+.++.+|...++..++++++++ +++++.....++|.+ ..++.++.+|+..++..++.. + ..+
T Consensus 671 ~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~ 750 (858)
T COG5215 671 GTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNA 750 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHH
Confidence 9999999999999999999997 899999999999999 456788899998887666431 1 234
Q ss_pred HHHHHHHHHHHHHhcCCCc--ChHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhCChhHHH
Q 000051 2366 REAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCMEDGQLA 2428 (2612)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~Lg~L~~~~~~~~~~ 2428 (2612)
+..+..|+-.+........ ..||.-+|+..+-....|++ +...+++..++|.|+..+|..++.
T Consensus 751 ~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk 817 (858)
T COG5215 751 VQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELK 817 (858)
T ss_pred HHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchh
Confidence 4555556555555444322 24888889988887777763 455578899999999999987544
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-18 Score=203.77 Aligned_cols=666 Identities=16% Similarity=0.167 Sum_probs=436.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCcc-hhhhhHHHHHH-HhccCCCChHHhhhHHhHHHHHHHHHhhhhccC-CcchHhH
Q 000051 1225 LADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAV 1301 (2612)
Q Consensus 1225 l~d~~~~VR~~~~~a~~~~i~~~g~~-~~~~Llp~~~~-~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~-~~~~~~i 1301 (2612)
..+.+..-|...++.+..-...+|.. ..+.++|++.. .|+ |.-|+.++.++.++--.++.. .|++..|
T Consensus 177 vKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le---------Dqerhl~vk~idr~Ly~lddl~~pyvhkI 247 (975)
T COG5181 177 VKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE---------DQERHLVVKLIDRLLYGLDDLKVPYVHKI 247 (975)
T ss_pred cccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---------hhhhHhHHHHHHHHHHhcccccccceeeE
Confidence 35667778888888877666667765 46778887543 222 334666776776666555433 4666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000051 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2612)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2612)
+-..-..+-+++..+|...-+.+..++...+-. ..+..+-..+ ++.|.-+|...+.+.+.++..+|.. .+.+
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llp 319 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLP 319 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHH
Confidence 655566777788777776666666666544321 1111111111 2334457888899999999988875 4678
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH---Hh
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KL 1458 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v---~~ 1458 (2612)
+|...+.++++|..|+.++.+...+++-+|...-+|+..++..+-.++.|.+..||-.++.++..+++...++++ ..
T Consensus 320 fl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 320 FLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 898889988899999999999999999999989999999999999999999999999999999999998888864 67
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhh----CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC-Ch
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYC----APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP 1533 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~----~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-~~ 1533 (2612)
++.+|.++.....-.. -..+|.++.+. .|+...-+-...+..++..++.++.+....-........++-. .|
T Consensus 400 vl~pLw~g~~~hrgk~---l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp 476 (975)
T COG5181 400 VLCPLWEGASQHRGKE---LVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTP 476 (975)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCH
Confidence 7777777654321111 12233344332 2333222223444455555555555444333322222221111 11
Q ss_pred h--HhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCC
Q 000051 1534 E--IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2612)
Q Consensus 1534 ~--i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~ 1611 (2612)
+ .+.+.|.++... +.-|.| .+.++.++-..+..+ +++..++
T Consensus 477 ~~lr~~v~pefF~~f----w~rr~A----------------------------~dr~~~k~v~~ttvi---lAk~~g~-- 519 (975)
T COG5181 477 WKLRDQVSPEFFSPF----WRRRSA----------------------------GDRRSYKQVVLTTVI---LAKMGGD-- 519 (975)
T ss_pred HHHHHhhcHHhhchH----HHhhhc----------------------------ccccccceeehhHHH---HHHHcCC--
Confidence 1 122333322211 000000 000111111111112 2232233
Q ss_pred cchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000051 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2612)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-----~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~ 1686 (2612)
+.+...+.+.+.|+..-.|..++.+...+...+|..-+ ..++..++..++.++.. + .-...|++.+.
T Consensus 520 ------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-~-~~il~~f~tv~ 591 (975)
T COG5181 520 ------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-V-GLILPCFSTVL 591 (975)
T ss_pred ------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-c-cEEEeccccee
Confidence 23667777778888888899999998888888775433 34555555555544322 1 11123344443
Q ss_pred HH---hChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch-hhhHHhHHHHHHhhcCCCChhHHHHHHHHHH
Q 000051 1687 AA---LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2612)
Q Consensus 1687 ~~---~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~~iip~ll~~L~d~~~~VR~~Al~al~ 1762 (2612)
.. .|+.++..++..++..++++.+.+|+.+..+.+.++..+...= ..-+.++--.++..+..+.++|--..+.|+.
T Consensus 592 vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 592 VSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred eehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 33 3455778889999999999999999999999888887654210 1334555566788899999999888888888
Q ss_pred HHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhC
Q 000051 1763 VLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2612)
Q Consensus 1763 ~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg 1838 (2612)
.+....+-. .+..++|.+.-.+.+++.++....+.++|.+...-+ + ..|
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p--------------e-------------yi~ 724 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP--------------E-------------YIG 724 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc--------------c-------------cCC
Confidence 887665443 456688888888888999999999999998753311 1 112
Q ss_pred hhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch
Q 000051 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2612)
Q Consensus 1839 ~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~ 1918 (2612)
...+-++.-.|...+...+.++|++|...++.+...-+. ..++..+++.|+..+...|....-+++-..+.+|+
T Consensus 725 ~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 725 VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 222223333344445667889999999999999886553 23455666777777777888888888888887776
Q ss_pred hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000051 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l 1992 (2612)
- .++|.+..-...|+.+|++|++.+++-+.+..+. .-.+|+-.+.|.+..++.|.|+.-|..|...+..+
T Consensus 799 f---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~-~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 799 F---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ-ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred h---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH-HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 4 5677788777889999999999999988777664 45678899999999999999999999887766554
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-18 Score=202.77 Aligned_cols=749 Identities=15% Similarity=0.202 Sum_probs=479.3
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhHHHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHh
Q 000051 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2612)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~ 1505 (2612)
..++..+..|..+...+..=...+.+.. +++++|.+++. |+++ .|+-.+.++..+.+...+...++..+|+-.+-
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDq---erhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQ---ERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhh---hhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 4567777888887777666555565554 48899988774 5543 46777888888888766666666666665556
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhHhhHHHHH
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~i~~~~l~~iip~L 1581 (2612)
.++-|.++.+|....+.+.+++...+=. .++..+-.-+.+.++++|+ +...++ ++-..+.+.|.+
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~---~~vs~mrpDi~~~deYVRnvt~ra~~vva--------~algv~~llpfl 321 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLG---FSVSSMRPDITSKDEYVRNVTGRAVGVVA--------DALGVEELLPFL 321 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccc---eeeeeccCCcccccHHHHHHHHHHHHHHH--------HhhCcHHHHHHH
Confidence 6788999999988888888887765411 1111111122334556663 222222 122345678888
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000051 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2612)
Q Consensus 1582 ~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~---~~~~~ 1657 (2612)
.....++ +|+-|..+..+...+|...+. ...+|+..++..+.+++.|....||..++.+++.+++..|+ +.|+.
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 8887776 999999999999999988765 67889999999999999999999999999999999998776 36788
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH----HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc-hh
Q 000051 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQ 1732 (2612)
Q Consensus 1658 ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~-f~ 1732 (2612)
++..|.+....+.+. +-.....+.|-++.-+.+++. .+.+..+...+++++.+.+...+. +...|...|.. -.
T Consensus 400 vl~pLw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~-v~~~C~~v~~~tp~ 477 (975)
T COG5181 400 VLCPLWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLV-VERICDKVGTDTPW 477 (975)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHH-HHHHHhccCCCCHH
Confidence 888887776655432 222333444555555555544 456667777788888877765543 44455544432 12
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1733 NYLQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~~VR~~Al---------~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
-+..++.|.+++... .|..|. .+-..+.+..|. +.+...+.+...|+....|.-.+.+....+
T Consensus 478 ~lr~~v~pefF~~fw-----~rr~A~dr~~~k~v~~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 478 KLRDQVSPEFFSPFW-----RRRSAGDRRSYKQVVLTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred HHHHhhcHHhhchHH-----HhhhcccccccceeehhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHH
Confidence 234556666655432 121221 111112222222 223334445556666556655555555544
Q ss_pred HHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHH
Q 000051 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2612)
Q Consensus 1804 ~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~ 1881 (2612)
..++ ..+ -| ..+. .+++..++... +|....+ .+.+++++.....--.++
T Consensus 550 ~~lg-~~~-------~d----------Erle--------erl~d~il~Afqeq~~t~~~---il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 550 SRLG-RLG-------FD----------ERLE--------ERLYDSILNAFQEQDTTVGL---ILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred Hhcc-ccc-------cc----------HHHH--------HHHHHHHHHHHHhccccccE---EEecccceeeehhhccCc
Confidence 3321 100 00 0011 11222222222 1211111 111122222222223358
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---hchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh
Q 000051 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRK---LGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1957 (2612)
Q Consensus 1882 ~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~---~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~ 1957 (2612)
|++.++..+++.|.++.+++|..|+..++.++.. +|+. .+..+-.+|.+.+....+++--..+.++..|...++-.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 8999999999999999999999999988877654 4543 57777788888999999999888888888887776666
Q ss_pred hHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-hhhhhHH---HHHHhccCCCcchHHHHHHHHHhhhcc
Q 000051 1958 QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVP---TLLHALEDDQTSDTALDGLKQILSVRT 2033 (2612)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~-~~~~ilp---~Ll~~L~~~~~~~~al~~L~~il~~~~ 2033 (2612)
.+.+-...++|.+...|.+.+..|..+....++.++...... ...+... .|++.|.+-.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~n----------------- 743 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWN----------------- 743 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhh-----------------
Confidence 666777888899989998999999999998899887753321 1112111 1111111100
Q ss_pred cccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHH
Q 000051 2034 TAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113 (2612)
Q Consensus 2034 ~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~l 2113 (2612)
..+.-.+...+|.+++..|+ ..++..|++.|+..+...|....-+++.+...++ .-.+
T Consensus 744 -------------KeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg---pfsV 801 (975)
T COG5181 744 -------------KEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG---PFSV 801 (975)
T ss_pred -------------HHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC---chhh
Confidence 11222456789999998887 3788889999987777777766666666655433 4578
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHH
Q 000051 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2114 l~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
+|.|+.-...++..+++..+.++..+|+..+..-.+|+-.+.+.|-..+.|.|+.-|+.|...+..+.-+++....+...
T Consensus 802 lP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~ 881 (975)
T COG5181 802 LPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAA 881 (975)
T ss_pred HHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHH
Confidence 89999999999999999999999999999988888899999999999999999998988887777766544322111111
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhh
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~ 2273 (2612)
-.++..+.-.+...+|.+....-+|+..+....|...+-.|+.+
T Consensus 882 ----------------------------------IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~q-- 925 (975)
T COG5181 882 ----------------------------------IHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQ-- 925 (975)
T ss_pred ----------------------------------HHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence 11233333344556677777777788888888876666666443
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH
Q 000051 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312 (2612)
Q Consensus 2274 ~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp 2312 (2612)
.|-.. +..||..-...+..+-......+.||.|
T Consensus 926 -----GLFHP-s~~VRk~ywtvyn~myv~~~damvp~yp 958 (975)
T COG5181 926 -----GLFHP-SSTVRKRYWTVYNIMYVFDSDAMVPCYP 958 (975)
T ss_pred -----hccCc-hHHHHHHHHHHHhhhhhccccccccccc
Confidence 22222 4556665444444443333344555543
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-17 Score=212.29 Aligned_cols=558 Identities=21% Similarity=0.252 Sum_probs=402.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000051 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2612)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~ 1428 (2612)
.++.+.|.....-+..+....|.... ...+++++.+.+ ++ +..+...+..-++.+....| ...|...++|.+...
T Consensus 93 ~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 93 NTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELL 167 (759)
T ss_pred chhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhh
Confidence 34567788888888888888887665 347999999998 54 46666666665665554433 123344566666667
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh-HHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhh
Q 000051 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT-KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTE 1506 (2612)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~-r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~ 1506 (2612)
..+....||+.+.+.+..+...++.......+-+++..+...+|+. |..+|.+++...-..+ +.+.. ++-|....
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~ 244 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQS 244 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHh
Confidence 7788889999999999999998888877666666777777778876 4456666666655444 33333 44455667
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCChhH-hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhh
Q 000051 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585 (2612)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l 1585 (2612)
+++|..+.||.++.+-++.++..+.+... ..++|.+.....|
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D------------------------------------- 287 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD------------------------------------- 287 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc-------------------------------------
Confidence 88999999999999999999988764322 3344444444444
Q ss_pred cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHH
Q 000051 1586 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLD 1664 (2612)
Q Consensus 1586 ~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-~~~ll~~L~~ 1664 (2612)
....+|..|...+.++...+..+. +....+.+.+.+...|++|.+|.........+...+|++. .....+....
T Consensus 288 --dqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 362 (759)
T KOG0211|consen 288 --DQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSN 362 (759)
T ss_pred --chhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHH
Confidence 444566666666666666654321 4455688888899999999999999999999999998863 3455666666
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhChh-----hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHH
Q 000051 1665 ALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2612)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~ii 1739 (2612)
.++... ...|...+.-..++...+..+ ..+.++|.+...+.+.+.++|.........+...+|. ..-+....
T Consensus 363 l~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~ll 439 (759)
T KOG0211|consen 363 LLKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELL 439 (759)
T ss_pred Hhcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccC
Confidence 665443 435555555555555544421 2356778888889999999999888877777777773 34566788
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHHh---hhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000051 1740 PAILDGLADENESVRDAALGAGHVLVEHY---ATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2612)
Q Consensus 1740 p~ll~~L~d~~~~VR~~Al~al~~lv~~~---~~~-~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~ 1815 (2612)
|..+..++|+...||......+....... |.. ..+.++|.+.+...|.+||+|.+.++.+..++.+
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---------- 509 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---------- 509 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999988875554333322 222 2345888888888888999999999888877533
Q ss_pred cCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHh
Q 000051 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2612)
Q Consensus 1816 ~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~-~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L 1894 (2612)
+|.+++++.+..++.. +.|....+|++|...+..++..++. .-....+++.++...
T Consensus 510 ---------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~ 566 (759)
T KOG0211|consen 510 ---------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMD 566 (759)
T ss_pred ---------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHh
Confidence 2223333334444433 6788889999999999999987772 223445556666666
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHH
Q 000051 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2612)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2612)
.++++..|.+...++..++..+|.. ....++|.+..+..|+.++||.+++..+..++......... ..+.|.+...
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L 643 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETL 643 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHh
Confidence 7778999999999999999999987 57899999999999999999999999999987766554433 4566666666
Q ss_pred hcCCcHHHHHHHHHHHHHHHHH
Q 000051 1974 LCDSILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1974 L~D~d~~Vr~~A~~al~~l~~~ 1995 (2612)
..|++.+||..|..+++.+...
T Consensus 644 ~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 644 SSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred ccCcccchhHHHHHHHHHHHHH
Confidence 6799999999999999887544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-13 Score=176.73 Aligned_cols=530 Identities=18% Similarity=0.224 Sum_probs=379.3
Q ss_pred hhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCC-CCHHHHHHHHhhhHHhHhh
Q 000051 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQS 1330 (2612)
Q Consensus 1252 ~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~-~~~~Vq~~~~~~L~~lv~~ 1330 (2612)
...++|.+.+... ..+++.+.+..-+|.+..+. .-|.+..++...++.+.. ....||..+++++......
T Consensus 119 r~~lipf~~e~~~-------~~dev~~~~a~~~~~~~~~v--~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAED-------DEDEVLLDLAEQLGTFLPDV--GGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhcc-------chhHHHHHHHHHhcccchhc--cchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888887762 24566666655666555442 123444444334444433 3446899999988777665
Q ss_pred hcchh-HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000051 1331 MQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2612)
Q Consensus 1331 ~~~~~-~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~ 1409 (2612)
..+.. .+.+-.++..+...+....|..++...+..........++ ..+.+...+..++. ++.+|.++..-++.++..
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAKV 267 (759)
T ss_pred cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHHH
Confidence 54432 3555567777766632244555556666666666555554 36777777888887 799999999999999988
Q ss_pred hcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh
Q 000051 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1410 ~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~ 1487 (2612)
.+. ..-...++|.......|....||.+|..++..++..+... ..+.+.+.+++..++..|+++.........+..
T Consensus 268 ~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 268 LES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred HHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHH
Confidence 875 3334467888888889999999999999999999877655 458899999999999999999877766655554
Q ss_pred hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC---hh--HhhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000051 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE--IASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2612)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~--i~~ivp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2612)
....+ ..-+..++.....++|...++|.++..-.+.+...... +. .+.++|.+...+.|.+.++|.+....+.
T Consensus 346 ~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 346 AVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred Hhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 32221 22356678888899999999999999888888876652 22 2567899999999999998855432211
Q ss_pred --ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHH
Q 000051 1563 --TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2612)
Q Consensus 1563 --~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~ 1640 (2612)
..... .+.....+.|.+...++|..+.+|....+.+..+-.. .+..-+..+.+..+|.+..+-.|..|.+|.+..
T Consensus 424 ~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 424 GLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred ccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 00111 2334556788888889999999999888766544333 333345567778999999998899999999999
Q ss_pred HHHHHHHhhhCCCCchhhHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHhChhh-HHhHhHHHHHhccCCChhhHhHHHH
Q 000051 1641 RAIGSLIRGMGEENFPDLVSW-LLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1641 ~aL~~L~~~~g~~~~~~ll~~-L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~-l~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
..+..++...|..++++.+-. ++..+.+ ..+..|.+++..+..++..+|.+. ...++|.++....++++.+|...+.
T Consensus 501 ~~ip~la~q~~~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 501 EYIPQLALQLGVEFFDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 999999998886655544333 3333333 335688999999999999999542 3678888888888888999999999
Q ss_pred HHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-hHHHHhhccCCCchHHHHHHHH
Q 000051 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSVE 1797 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~-llp~L~~~l~d~~w~vR~~a~~ 1797 (2612)
++..++..+|..+ +-..++|.+.....|..++||-.+++.+..++..+.....+. +.|.+.....|.+-.+|..+..
T Consensus 580 si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 580 SIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred HHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 9999999999854 457799999999999999999999999999988776655443 6666665555554444444445
Q ss_pred HHHHH
Q 000051 1798 LLGDL 1802 (2612)
Q Consensus 1798 ll~~l 1802 (2612)
..+.+
T Consensus 658 a~~~i 662 (759)
T KOG0211|consen 658 AFGSI 662 (759)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-12 Score=158.14 Aligned_cols=424 Identities=18% Similarity=0.239 Sum_probs=308.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhch
Q 000051 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ 1499 (2612)
+...++|+--+-|++|+.-+..++..+-.. .+..++..+... ..+.+...|+|++..+.+++-+-...-..++..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 345667777777888877777777654332 456777755543 345566667798888887776544333348999
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh---hHhhHHHHHHhhcCCCChhHHH---HHHHHHhcccccc-CChh
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNT-VDAP 1572 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ivp~Ll~~l~d~~~~~r~---al~~L~~~~~~~~-i~~~ 1572 (2612)
++|.++.+++|++..||-.||.++-+++++.+.. ++..++..+.+...|++..+|. -++.+++. .+.. ...-
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikd-IVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKD-IVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHH-hcccccccc
Confidence 9999999999999999999999999999988753 5688999999999999888874 34555542 2222 2256
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
+++.++|.+...+...++.+|.....++..+-.. + .-++..|++.+++++.+.+.|+.++||..+-.+++.+...+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~- 240 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR- 240 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-
Confidence 7889999999999989999999999999887664 2 246889999999999999999999999999888887765432
Q ss_pred CCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1653 ~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
++.... ..++..+.+...+.++++.++..++.++..+....|+++.
T Consensus 241 ---------------s~P~s~-------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 241 ---------------SSPSSM-------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred ---------------cCcccc-------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 111110 1233445566667788889999999999999999999999
Q ss_pred hhHHhHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHHhhhc----hhh--hhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000051 1733 NYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~-~VR~~Al~al~~lv~~~~~~----~i~--~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~ 1805 (2612)
+|+..++..++.++.|.++ .+++.+...-..+...++.. .++ .++..+.+.+.++....|.++++.+-.+...
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999877 47776655443444333322 133 5888888999999999999999999887655
Q ss_pred hcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChh-hHHHHHH
Q 000051 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMP 1884 (2612)
Q Consensus 1806 ~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~-~l~~~l~ 1884 (2612)
.+|.. . -+.+.++..+...++|.+..|-..++.++..++..... .+.+
T Consensus 367 ~p~ql-----------------------~-----~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~--- 415 (675)
T KOG0212|consen 367 APGQL-----------------------L-----VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRK--- 415 (675)
T ss_pred Ccchh-----------------------h-----hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHH---
Confidence 44221 1 12345666777788999999999999999999874322 2333
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch
Q 000051 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2612)
Q Consensus 1885 ~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~ 1918 (2612)
++..++.++.....-.+.-+.-.+..+|..+.+
T Consensus 416 -fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 416 -FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred -HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH
Confidence 333444445544444455555566666655543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-08 Score=130.83 Aligned_cols=627 Identities=17% Similarity=0.200 Sum_probs=337.1
Q ss_pred CcchHhHHHHHHHhcCCCCHHHH--HHHHhhhHHhHhhhcch--------hHHHHHHHHHHhhcC-----CChHHHHHHH
Q 000051 1295 DPKVHAVVDKLLDVLNTPSEAVQ--RAVSSCLSPLMQSMQDE--------APTLVSRLLDQLMKS-----DKYGERRGAA 1359 (2612)
Q Consensus 1295 ~~~~~~i~~~L~~~L~~~~~~Vq--~~~~~~L~~lv~~~~~~--------~~~li~~ll~~L~~~-----~~~~~R~~Aa 1359 (2612)
||.++.+++.+...+.......+ ..+.+-+..+....+.+ .-..++.+++.|..+ .+|..|..-.
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilL 146 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILL 146 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 56666777776666655443333 23334444443332211 123556666666522 2578888888
Q ss_pred HHHHHHHhhh-Ccchhh------h----hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000051 1360 FGLAGVVKGF-GISSLK------K----YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2612)
Q Consensus 1360 ~~L~~l~~~l-g~~~l~------~----~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~ 1428 (2612)
.-|.-++... ..+.++ + ..++.+...++... +..|..|..+++.+.... ...+++...+..++.+
T Consensus 147 lWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~--~~~r~~aalllsk~~sR~--D~~~~~~~Fl~~~l~~ 222 (1133)
T KOG1943|consen 147 LWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS--GILRRSAALLLSKLFSRT--DVKDLLLSFLDWLLDC 222 (1133)
T ss_pred HHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHcccc--cHHHHHHHHHHHhhcc
Confidence 7777777542 112111 1 13445555555554 355666666555544221 1223344444444444
Q ss_pred cCCCCHH--HHHHHHHHHHHHHHhh---------------------cHH---hHHhHHHHHHhhh-------cCCChhhH
Q 000051 1429 FSDQVVA--VREAAECAARAMMSQL---------------------SAQ---GVKLVLPSLLKGL-------EDKAWRTK 1475 (2612)
Q Consensus 1429 l~D~~~~--VR~aa~~al~~i~~~l---------------------~~~---~v~~ilp~Ll~~L-------~~~~w~~r 1475 (2612)
-.+..++ +......++..+.... +.+ ...++++.+++.+ .+.+|+..
T Consensus 223 ~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~ 302 (1133)
T KOG1943|consen 223 PSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYS 302 (1133)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhh
Confidence 4443333 1122222222222211 111 2355677777743 25689888
Q ss_pred HHHHHHHHHHHhh--Cc-------------hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1476 QSSVQLLGAMAYC--AP-------------QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1476 ~~a~~~L~~ia~~--~p-------------~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
++.-.+.+++-.. +| +.....+..++..|+..++|.+..||..|++.++.+....+-.-.+..+.
T Consensus 303 rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~ 382 (1133)
T KOG1943|consen 303 RGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIG 382 (1133)
T ss_pred cccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHH
Confidence 7766555543321 11 11223345677788889999999999999999999998876322355555
Q ss_pred HHHhhcC---CCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhccCC
Q 000051 1541 TLLMGLT---DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE--------RSAETKKKAAQIVGNMCSLVTE 1609 (2612)
Q Consensus 1541 ~Ll~~l~---d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d--------~s~~vr~~a~~~l~~l~~~~~~ 1609 (2612)
..++.+. ++..-. .++-++......+-+....+..++|.+.+++.- ....+|.+||-++-.+++. -+
T Consensus 383 svid~~~p~e~~~aWH-gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys 460 (1133)
T KOG1943|consen 383 SVIDLFNPAEDDSAWH-GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YS 460 (1133)
T ss_pred HHHHhcCcCCchhHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CC
Confidence 5555332 111111 222223221222333445677899999988742 3567999999999999886 46
Q ss_pred CCcchhhHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000051 1610 PKDMIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2612)
Q Consensus 1610 ~~~l~~~l~~ll~~L~-~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~ 1688 (2612)
+.++.|++..+.+.+. ..+-|+.-..|.+|..|+-..+...|. ++.=++.+ .. .+.-+...|......+...++.
T Consensus 461 ~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n--~p~Gi~Li-s~-~dy~sV~~rsNcy~~l~~~ia~ 536 (1133)
T KOG1943|consen 461 PSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN--FPHGISLI-ST-IDYFSVTNRSNCYLDLCVSIAE 536 (1133)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC--CCCchhhh-hh-cchhhhhhhhhHHHHHhHHHHh
Confidence 7889999997777665 567799999999999998877665443 22111111 10 1111223444444445554444
Q ss_pred hChhhHHhHhHHHHHh-ccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000051 1689 LGTVYFEHILPDIIRN-CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2612)
Q Consensus 1689 ~g~~~l~~llp~l~~~-~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~ 1767 (2612)
+. .+.+.++..++.. +.+-+..+|+.+..++..+....++.+..| .+|+++....-.+...|..+.-+++.++..
T Consensus 537 ~~-~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~---~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 537 FS-GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADY---VLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred hh-hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhccc---chhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 32 2345555555544 677889999999999999888877755533 677777776666777888777776665533
Q ss_pred hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHH
Q 000051 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2612)
Q Consensus 1768 ~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~ 1847 (2612)
+-.- .-+.+.+ ...|.+ . ...+++
T Consensus 613 ~~~l--~~~~~~l--------~e~~i~------~----------------------------------------l~~ii~ 636 (1133)
T KOG1943|consen 613 LRKL--EPVIKGL--------DENRIA------G----------------------------------------LLSIIP 636 (1133)
T ss_pred hhhh--hhhhhhh--------HHHHhh------h----------------------------------------hhhhcc
Confidence 2110 0000000 000000 0 001111
Q ss_pred HHHHHccC--CCHHHHHHHHHHHHHHHhcChhhHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--chhhhh
Q 000051 1848 ALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKL--GERVLP 1922 (2612)
Q Consensus 1848 ~L~~~~~D--~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~-ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~--~~~~l~ 1922 (2612)
.++...-+ .....|.+....+..+..+.++.+.+++-. ....+.+.+.+++ .+|..|..++++++... ++....
T Consensus 637 ~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~ 715 (1133)
T KOG1943|consen 637 PICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE 715 (1133)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh
Confidence 11111101 013456666666666665555444443333 3334444455566 89999999999998654 222111
Q ss_pred -hHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhHHHhHhHHH-HHHHHHh-cCCcHHHHHHHHHHHHHHHHHh
Q 000051 1923 -SIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELI-PTIRTAL-CDSILEVRESAGLAFSTLFKSA 1996 (2612)
Q Consensus 1923 -~llp~L~~~L~d~-~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll-~~l~~~L-~D~d~~Vr~~A~~al~~l~~~~ 1996 (2612)
.++......+.+. +..+|++...+++.+ ....+.-++.+.+ ..+.... .|..++-|.....++..+++..
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~~l----p~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~ 789 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALGVL----PSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTV 789 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHccC----cHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHH
Confidence 2434444445554 677888887777654 2222222222222 2222221 1224555665555555554443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-11 Score=148.98 Aligned_cols=419 Identities=19% Similarity=0.227 Sum_probs=306.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHh
Q 000051 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEH 1696 (2612)
Q Consensus 1624 L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ 1696 (2612)
+.+.+.|+..+-|++|+--+..+++.+-.. .+..++..+............|.|...+++.+.-++|.+ +.+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 455667888889999999999998865433 355666666555544444446778888888888888876 4789
Q ss_pred HhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhh
Q 000051 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2612)
Q Consensus 1697 llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~l 1776 (2612)
++|.++..+++++..+|-.++..+..+++...+++-+|++.+...+.+..+|.+..||.+|- -+..
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdR------------- 150 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDR------------- 150 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHH-------------
Confidence 99999999999999999999999999999999999999999999999999999988886651 1111
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCC
Q 000051 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2612)
Q Consensus 1777 lp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~ 1856 (2612)
++..+. .+++..++ .+.+++.+-....+.
T Consensus 151 -------------------------LikdIV----------te~~~tFs----------------L~~~ipLL~eriy~~ 179 (675)
T KOG0212|consen 151 -------------------------LIKDIV----------TESASTFS----------------LPEFIPLLRERIYVI 179 (675)
T ss_pred -------------------------HHHHhc----------cccccccC----------------HHHHHHHHHHHHhcC
Confidence 111110 00010111 122333333345667
Q ss_pred CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhhHHHHHhhhc
Q 000051 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGL 1932 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~L 1932 (2612)
+..+|+.-+.-+..+-...+..+-.|+|.+++.+++.|+|++.++|..+-.+++++....... -.+.+++++...+
T Consensus 180 n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l 259 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL 259 (675)
T ss_pred CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc
Confidence 888899888888877777778888999999999999999999999999999999998776433 2578889999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhChhhh------hhhH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQAI------DEIV 2005 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~-~Vr~~A~~al~~l~~~~g~~~~------~~il 2005 (2612)
.++++.++..+..|+-+.+. .++.++..++..++..+.+++.|.++ ..++.|...-+.+...++.... ..++
T Consensus 260 ~ss~~~iq~~al~Wi~efV~-i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii 338 (675)
T KOG0212|consen 260 QSSEPEIQLKALTWIQEFVK-IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSII 338 (675)
T ss_pred cCCcHHHHHHHHHHHHHHhc-CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHH
Confidence 99999999999999999865 45567778899999999999988776 5777776655555444433211 1233
Q ss_pred HHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHH---HHHHhCCChhhhHhhHHHHHHHh
Q 000051 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGA---LAEVAGPGLNFHLGTILPALLSA 2082 (2612)
Q Consensus 2006 p~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~---La~~~g~~l~~~l~~il~~Ll~~ 2082 (2612)
..+...+.++. . ..+..++.. |-..++..+.-|...+.+.|+..
T Consensus 339 ~vl~~~l~~~~--------------------------------~-~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 339 EVLTKYLSDDR--------------------------------E-ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHhhcch--------------------------------H-HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 33333332211 0 112233333 33446778888999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Q 000051 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2612)
Q Consensus 2083 L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~ 2141 (2612)
|.|.+++|-..+...+..++.+-...+...++..|++..+.+..-.+.-+...+..+|.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 99999999988998888888776666788888888888877655555555555555554
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-08 Score=127.63 Aligned_cols=763 Identities=17% Similarity=0.162 Sum_probs=419.7
Q ss_pred HHHHHhhhhccC--CcchHhHHHHHHHhcC--CCCHHHHHHHHhhhHHhHhhhcchh------HHHHHHHHHHhhcCCCh
Q 000051 1283 FTGALAKHLAKD--DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSRLLDQLMKSDKY 1352 (2612)
Q Consensus 1283 ~l~~La~~l~~~--~~~~~~i~~~L~~~L~--~~~~~Vq~~~~~~L~~lv~~~~~~~------~~li~~ll~~L~~~~~~ 1352 (2612)
++.-+-++.++. ..++.++...|...+. ..+..|...+..||..+++...... ...+..++....+ +..
T Consensus 74 LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~p 152 (1176)
T KOG1248|consen 74 LLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKP 152 (1176)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-Cch
Confidence 444444444331 3345666777777666 5677899999999999987743221 2233333333333 345
Q ss_pred HHHHHHHHHHHHHHhhhCcchhhh----hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000051 1353 GERRGAAFGLAGVVKGFGISSLKK----YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2612)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg~~~l~~----~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~ 1428 (2612)
..|..|..+++.++.+...-.... ..+..++...++....+......+..+..|-..+...-.+.+..+...++..
T Consensus 153 kvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i 232 (1176)
T KOG1248|consen 153 KVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNI 232 (1176)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh
Confidence 789999999999998643111100 0233334444443322222223333333333333333346788899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhhhcC-CChhhHHHHHHH----HHHHHhhCchhhhhhhch
Q 000051 1429 FSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLED-KAWRTKQSSVQL----LGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~-~~w~~r~~a~~~----L~~ia~~~p~~l~~~L~~ 1499 (2612)
++..+..|+-.+.+++..++..-+.. ....++..+.+.--+ .+...-.+-+.+ ...++...++..-..++.
T Consensus 233 ~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~ 312 (1176)
T KOG1248|consen 233 TTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPR 312 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhh
Confidence 99999999999999999888754442 223344433332111 111111111112 222333334444445677
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
+++.++.++...++++-.+|-+++..+.+.... +.+.++..
T Consensus 313 ~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~---------------------------------- 353 (1176)
T KOG1248|consen 313 LFSLFFTILESLIEELVQAASQSLKEILKESVT-----VIDALCSK---------------------------------- 353 (1176)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-----ccHHHHHH----------------------------------
Confidence 778777777788888888888888887753321 11111111
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll 1659 (2612)
.+..+++-+...+-..+.+++..+++.++. ...|++-..+..+-..=.+++..-+...-.|+|+-+.++|++.+-.++
T Consensus 354 ~~~~~l~~kf~~~~~~ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~l 431 (1176)
T KOG1248|consen 354 QLHSLLDYKFHAVWRFILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTIL 431 (1176)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHc
Confidence 112222223334555667777777776654 445665555555555445566666778889999999999998766666
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHH----HhChhhH-HhHhHHHHHhc---------cCCChhhHhHHHHHHHHhhh
Q 000051 1660 SWLLDALKSDNSNVERSGAAQGLSEVLA----ALGTVYF-EHILPDIIRNC---------SHQRASVRDGYLTLFKYLPR 1725 (2612)
Q Consensus 1660 ~~L~~~L~~~~~~~~R~~aa~~L~~i~~----~~g~~~l-~~llp~l~~~~---------~~~~~~vR~~~~~~l~~L~~ 1725 (2612)
|.=+ ..+.....| ++ |--+++ +....++ +.++|-..+.- ++.....+.-..++|+-|+.
T Consensus 432 pLnl---~~~s~~~~R---sW-LLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~ 504 (1176)
T KOG1248|consen 432 PLNL---HAESLSFTR---SW-LLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPG 504 (1176)
T ss_pred chhc---cccccccch---hH-hHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChh
Confidence 6332 111111112 11 111111 1111122 44444433221 11122456667788888888
Q ss_pred hhc--cchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-hhc-----------hhhhhHHHHhhccCC-----
Q 000051 1726 SLG--VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-ATT-----------SLPLLLPAVEDGIFN----- 1786 (2612)
Q Consensus 1726 ~~g--~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-~~~-----------~i~~llp~L~~~l~d----- 1786 (2612)
.|. .+...-+..+.|.+...+.... +.|.....+++.+++.- +.. ....++|.+.+.-..
T Consensus 505 FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~ 583 (1176)
T KOG1248|consen 505 FCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAG 583 (1176)
T ss_pred hhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccc
Confidence 763 4555556777888877776654 89999999998888653 111 112244443322211
Q ss_pred -CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHH----H
Q 000051 1787 -DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV----R 1861 (2612)
Q Consensus 1787 -~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~V----R 1861 (2612)
+.-+.|..-++.+....++.+ +.+....+...+-....|.+..+ +
T Consensus 584 ~~~l~~~~~~L~~i~~~~~~~t------------------------------~~dv~~~l~~s~~e~as~~~~s~~~~~~ 633 (1176)
T KOG1248|consen 584 RKILASRSTVLEIIRVDYFTVT------------------------------PTDVVGSLKDSAGELASDLDESVASFKT 633 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhhcc------------------------------cHHHHHHHHHHHHhHhccchhhhhhHHH
Confidence 111122222222221111110 00000111111111112221122 2
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----chhhhhhHHHHHhhhcCCCC
Q 000051 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL-----GERVLPSIIPILSRGLKDPS 1936 (2612)
Q Consensus 1862 ~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~-----~~~~l~~llp~L~~~L~d~~ 1936 (2612)
..-++.+..++...+. ..+..+....-...++.+..++.-+.+.|.+++..- -......+...+...+++..
T Consensus 634 ~slLdl~~~~a~~~~e---~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~ 710 (1176)
T KOG1248|consen 634 LSLLDLLIALAPVQTE---SQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS 710 (1176)
T ss_pred HHHHHHHHhhhccccc---hhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc
Confidence 2223333333332221 222222211112233457889999999999998761 11234566666677777777
Q ss_pred hhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-----HhChh----hhhhhHHH
Q 000051 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK-----SAGMQ----AIDEIVPT 2007 (2612)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~-----~~g~~----~~~~ilp~ 2007 (2612)
...|...+.++..++..++ .....+.+..++.+.-.+.+.+...|..|..++-.|.. ..|.. .++++++.
T Consensus 711 ~~~~~~rl~~L~~L~~~~~-~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLS-AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 7788899999999888777 34445667777766666688889999998887766652 12211 22222222
Q ss_pred HHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC-hhhhHhhHHHHHHHhcCCC
Q 000051 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNFHLGTILPALLSAMGDD 2086 (2612)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~-l~~~l~~il~~Ll~~L~~~ 2086 (2612)
+...+-.+... ..+...-+++.+..-.+.. -..++..++..+..++...
T Consensus 790 Isagl~gd~~~------------------------------~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 790 ISAGLVGDSTR------------------------------VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred HHhhhcccHHH------------------------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 22221111100 0000122333333222222 2367788888888889999
Q ss_pred CHHHHHHHHHHHHHhhhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhccc-chhccHHHHHHHHH
Q 000051 2087 DMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLI 2159 (2612)
Q Consensus 2087 ~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~-~~~~~~~~il~~L~ 2159 (2612)
+++++..|+..+..++..+++ .+++.+|+.++.+..+....+|...-.++-.+++..+. ++..++|+....++
T Consensus 840 sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL 917 (1176)
T KOG1248|consen 840 SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLL 917 (1176)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHH
Confidence 999999999999999988765 56778899999988888889999999999999887664 34455554444433
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-07 Score=124.31 Aligned_cols=776 Identities=16% Similarity=0.144 Sum_probs=416.2
Q ss_pred CchhhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhChhhHH-----hHhHHHHHhccCCChhhHhHHHHHHHHhhhhh
Q 000051 1654 NFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYFE-----HILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2612)
Q Consensus 1654 ~~~~ll~~L~~~L~-~~~~~~~R~~aa~~L~~i~~~~g~~~l~-----~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~ 1727 (2612)
.|.+++..+...+. +..+..++..+..||+.++..-+...|. ..+..++...-++.|.+|..+...+..+...-
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p 169 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGP 169 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCC
Confidence 35555555555554 2234457778888999998876665552 33445666667889999988888777665411
Q ss_pred ---ccchhhhHHhHHHHHHhhcCCCC-hhHHHHHHH---HHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHH
Q 000051 1728 ---GVQFQNYLQQVLPAILDGLADEN-ESVRDAALG---AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2612)
Q Consensus 1728 ---g~~f~p~l~~iip~ll~~L~d~~-~~VR~~Al~---al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~ 1800 (2612)
+..-.|-...+...++..+.-.. +..-...++ -++.++..++...++.+-..+...+...+-.++..+++++.
T Consensus 170 ~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~ 249 (1176)
T KOG1248|consen 170 PFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLH 249 (1176)
T ss_pred CCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 11112223333333443333211 111122222 23333334455566666666667777777778888888888
Q ss_pred HHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc---cCCCHHHH--HHHHHHHHHHHhcC
Q 000051 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR---SDVSLSVR--QAALHVWKTIVANT 1875 (2612)
Q Consensus 1801 ~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~---~D~~~~VR--~aA~~~l~~l~~~~ 1875 (2612)
.+....++ ... .+....++..++... +|.-..+. ..-......++...
T Consensus 250 ~lf~~~~~---------------~l~------------a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q 302 (1176)
T KOG1248|consen 250 SLFKKHPT---------------ALA------------AELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQ 302 (1176)
T ss_pred HHHhcCCC---------------cch------------HHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhC
Confidence 87654221 000 111223444444332 22211110 00011111223334
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1876 ~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
+..-....|.+++.++..+.+..+..-+.+.+++.++...... +.+.+-. .+..++.-+...+-..++..+..+...+
T Consensus 303 ~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~ 381 (1176)
T KOG1248|consen 303 EEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKC 381 (1176)
T ss_pred HHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHh
Confidence 4444566788888888888888888888888888877654322 1111111 2444454454455555556666666666
Q ss_pred ChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhccc
Q 000051 1955 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTT 2034 (2612)
Q Consensus 1955 ~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~ 2034 (2612)
|+ ...+++...+..+...=.+++..-+..--.++|.-....|+..+=.++|-=+. .+.. +
T Consensus 382 G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~---~~s~----------------~ 441 (1176)
T KOG1248|consen 382 GE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLH---AESL----------------S 441 (1176)
T ss_pred hh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcc---cccc----------------c
Confidence 64 33444444444444433344444444555677777788888766556664221 1110 0
Q ss_pred ccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHH
Q 000051 2035 AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV 2114 (2612)
Q Consensus 2035 ~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll 2114 (2612)
..-..|+|.|.+. +.|..+.-|...|+|..++.... ...+.+.. ....-++.+.
T Consensus 442 ~~RsWLLPvLR~~---------------i~~A~La~F~~~ivpla~sl~~K-~~~l~~~~----------~~~~~~~tl~ 495 (1176)
T KOG1248|consen 442 FTRSWLLPVLRDY---------------IIGASLAFFTEYIVPLAMSLQLK-AKKLKEAG----------SQVSLYDTLV 495 (1176)
T ss_pred cchhHhHHHHHHh---------------hccCcHHHHHHHHHHHHHHHHHH-HHhhhhcc----------CcHHHHHHHH
Confidence 0001123333221 12555666666677665543210 00000000 0000112222
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHH
Q 000051 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2612)
Q Consensus 2115 ~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~ 2194 (2612)
-+|.. +|..||+ .|.|...-++++.+.+...+.... +.|...+.+|..++.......
T Consensus 496 ~QLW~---------------LLP~FC~-~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~------ 552 (1176)
T KOG1248|consen 496 DQLWS---------------LLPGFCN-YPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSS------ 552 (1176)
T ss_pred HHHHH---------------hChhhhC-CCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcc------
Confidence 22222 2233443 355666656677777777665433 788888888888877642100
Q ss_pred HHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCC------HHHHHHHHHHHH-HHHHhcChhhhhh
Q 000051 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS------AELREQAALGLG-ELIEVTSEQSLKE 2267 (2612)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~------~~~r~~aa~~L~-~li~~~~~~~l~p 2267 (2612)
+.-+... +. ..+...+||.+...-.+.. ...|....+.+. .++..++.
T Consensus 553 ---~a~e~~e-------------~~----s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~----- 607 (1176)
T KOG1248|consen 553 ---DAAENKE-------------VL----SNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPT----- 607 (1176)
T ss_pred ---hHHHHHH-------------HH----hhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccH-----
Confidence 0000000 00 0223345555554443322 233344444444 44444442
Q ss_pred chhhhhHHHHHHhcCC---CCHhHHHH-HHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 000051 2268 FVIPITGPLIRIIGDR---FPWQVKSA-ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343 (2612)
Q Consensus 2268 ~v~~i~~pLi~~l~~~---~~~~vk~~-al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~ 2343 (2612)
.+.+-|...+++. .+..++.. .+..|..+..-.+..-...+.++...+-...+..+..++..+...|+.++..
T Consensus 608 ---dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 608 ---DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred ---HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC
Confidence 1222222222211 11222221 1222222221111111122333332222233344889999999999999664
Q ss_pred -------cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000051 2344 -------STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2612)
Q Consensus 2344 -------~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2612)
..+++.+...|.+.+++.+...|...+++|..++...+.....-....|.+.|... .+.++..|.++-+||-
T Consensus 685 ~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 685 PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLV 763 (1176)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHH
Confidence 23456666667777777777889999999999999877433334445566666655 7778899999999988
Q ss_pred HHH--hh---CC----hhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChh
Q 000051 2417 IMS--QC---ME----DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFP 2487 (2612)
Q Consensus 2417 ~L~--~~---~~----~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ 2487 (2612)
.++ .. .+ .+.+.+++..+-..........+...+.++..++.+....+ +.++.+.+++.++..+.+.+++
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l-d~~~l~~li~~V~~~L~s~sre 842 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL-DDETLEKLISMVCLYLASNSRE 842 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhcCCHH
Confidence 877 21 11 12344454444333222332222223667778877766544 6678899999999999999999
Q ss_pred HHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC-chhhhhhHhHH
Q 000051 2488 LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN-PSAIMVHVALF 2558 (2612)
Q Consensus 2488 ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~-~~~v~~~l~~l 2558 (2612)
++.+|+..+..++......- -...+.++|+.+.....+....+|......+..+.+.. ++.+.++++..
T Consensus 843 I~kaAI~fikvlv~~~pe~~--l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee 912 (1176)
T KOG1248|consen 843 IAKAAIGFIKVLVYKFPEEC--LSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEE 912 (1176)
T ss_pred HHHHHHHHHHHHHHcCCHHH--HhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHH
Confidence 99999999888876653210 00245668888888888889999999999999999864 55566666543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-07 Score=124.42 Aligned_cols=461 Identities=20% Similarity=0.219 Sum_probs=245.8
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh--chh
Q 000051 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GER 1919 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~-~~~R~~A~~aL~~lv~~~--~~~ 1919 (2612)
+.++..++..++|.+..||-.|++.++.+....|..+ ....+..++.++.--+ +..=..|+-+|+++...- -+.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3566777788899999999999999999999999644 4455555666554222 222235677777777541 233
Q ss_pred hhhhHHHHHhhhcCC--------CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH-HHhcCCcHHHHHHHHHHHH
Q 000051 1920 VLPSIIPILSRGLKD--------PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR-TALCDSILEVRESAGLAFS 1990 (2612)
Q Consensus 1920 ~l~~llp~L~~~L~d--------~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~-~~L~D~d~~Vr~~A~~al~ 1990 (2612)
.++.++|.+..++.- ....+|-++|+.+-.+....++..+.+++..+.+.+. .++=|++-.+|.+|..||.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 467888988887652 2356899999999888888888999999988888765 4667999999999887775
Q ss_pred HHHHHhChh-hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhC----
Q 000051 1991 TLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---- 2065 (2612)
Q Consensus 1991 ~l~~~~g~~-~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g---- 2065 (2612)
. ++|.. .+ |.-++.... .+-.+++..+.+.+
T Consensus 497 E---~VGR~~n~------------------------------------p~Gi~Lis~-----~dy~sV~~rsNcy~~l~~ 532 (1133)
T KOG1943|consen 497 E---NVGRQGNF------------------------------------PHGISLIST-----IDYFSVTNRSNCYLDLCV 532 (1133)
T ss_pred H---HhccCCCC------------------------------------CCchhhhhh-----cchhhhhhhhhHHHHHhH
Confidence 4 34431 01 000000000 00111111111110
Q ss_pred --CChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHHh
Q 000051 2066 --PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKN 2142 (2612)
Q Consensus 2066 --~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~-l~~~~~~vR~~A~~~L~~l~~~ 2142 (2612)
..+..|... +++.++.. +.+-|..+|..++++|..+...
T Consensus 533 ~ia~~~~y~~~--------------------------------------~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 533 SIAEFSGYREP--------------------------------------VFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHhhhhHHHH--------------------------------------HHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 012223333 33333333 3344455555555555554443
Q ss_pred cccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCC
Q 000051 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222 (2612)
Q Consensus 2143 ~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~ 2222 (2612)
.+..+.. ..++.++......|...|.....+.+.++....+-. +.+...-.+. +
T Consensus 575 ~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~~~~~l~e~~------------------i---- 628 (1133)
T KOG1943|consen 575 EPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-PVIKGLDENR------------------I---- 628 (1133)
T ss_pred hHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-hhhhhhHHHH------------------h----
Confidence 3333322 123334444444555555555555555544332211 0000000000 0
Q ss_pred CCcCchhhHHHHHHHHhc-CC-HHHHHHHHHHHHHHHHhcChhh---hhhchhh-hhHHHHHHhcCCCCHhHHHHHHHHH
Q 000051 2223 LPKALQPLLPIFLQGLIS-GS-AELREQAALGLGELIEVTSEQS---LKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTL 2296 (2612)
Q Consensus 2223 ~p~~l~~ilp~l~~~L~~-~~-~~~r~~aa~~L~~li~~~~~~~---l~p~v~~-i~~pLi~~l~~~~~~~vk~~al~~L 2296 (2612)
.++..++|.+...-.+ |. .-.|. ++...++...... +..++.. ....+...+.+ +..+|.++..++
T Consensus 629 --~~l~~ii~~~~~~~~~rg~~~lmr~----~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av 700 (1133)
T KOG1943|consen 629 --AGLLSIIPPICDRYFYRGQGTLMRQ----ATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAV 700 (1133)
T ss_pred --hhhhhhccHHHHHHhccchHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHH
Confidence 0111122222211111 10 11122 2222332222111 1112211 11112223322 237899999999
Q ss_pred HHHHHhcCCCccCchH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH--hccCChhHHHHHHH-HhhhcC-CHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLP-QLQTTFIKCLQDS-TRTVRSSAALALGKLS--ALSTRVDPLVGDLL-SSLQVS-DAGIREAIL 2370 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lp-qL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~--~~~~~~~~~l~~Ll-~~l~~~-d~~vr~~~l 2370 (2612)
+.++...-.. .+... .++...+..+.+. ++.+|.--..++|.+- .++.+....+-.++ ...... .++.|...+
T Consensus 701 ~~l~s~y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V 779 (1133)
T KOG1943|consen 701 SDLVSTYVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNV 779 (1133)
T ss_pred HHHHHHHHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHH
Confidence 9988643111 11222 4777777888776 7899999999999872 23344444433222 222211 467888999
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC----C--C--HHHHHHHHHHHHHHHhhCC
Q 000051 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH----D--D--DHVRVSAASILGIMSQCME 2423 (2612)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~----~--~--~~vr~~aa~~Lg~L~~~~~ 2423 (2612)
.|+..++...+...-.....++.+.|.+.++| . | ..||++|...+..+...++
T Consensus 780 ~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 780 KALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 99999988776322223344555555555543 2 2 4699999999998876655
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-09 Score=149.68 Aligned_cols=468 Identities=16% Similarity=0.184 Sum_probs=316.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
....+.+.+.++ +...|..+-.++..+...-+ ....-+++.+.+-+.++++.+|-.|..++..+. +++-...
T Consensus 43 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~ 114 (526)
T PF01602_consen 43 LFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEP 114 (526)
T ss_dssp THHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhH
Confidence 344455666655 78888877776666554333 245567888888999999999988887777764 5666788
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC---hhH
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI 1535 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i 1535 (2612)
++|.+.+.+.+++|.+|+.|+.++..+....|+..... +++.+.+++.|+++.|+.+|+.++..+ +.-.+ +.+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~ 190 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH
Confidence 89999999999999999999999999998888765432 688888899999999999999999988 21111 223
Q ss_pred hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l--~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
..+++.|.+.+.++++..+ ..++.+.. +. ....... ..+++.+...+.+.++.+...+...+..+...
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~-~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------ 261 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRR--YA-PMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------ 261 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTT--ST-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHh--cc-cCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------
Confidence 5566666666677777665 45555442 11 1112222 45778888888877888888888877755431
Q ss_pred chhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh
Q 000051 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2612)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2612)
.+.+..+++.+..++.++++++|..+..++..++....+..+ . ....+..+..+++...|..+...+..++. .+
T Consensus 262 -~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~ 335 (526)
T PF01602_consen 262 -PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN---ES 335 (526)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-----HH
T ss_pred -hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-h-hhhhhheecCCCChhHHHHHHHHHhhccc---cc
Confidence 126677899999999999999999999999998876522212 1 11223355545556678777776665554 44
Q ss_pred hHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000051 1693 YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2612)
Q Consensus 1693 ~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~ 1771 (2612)
....+++.+.+.+.+ .+..+|..++..++.++..+++.+..|+.. +++.+....+.+...+...+..++...+..
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~----l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT----LLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH----HHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH----HHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 556788888888744 477899999999999998887765555444 444444444455444444444443332111
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHH
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~ 1851 (2612)
+...+..++.
T Consensus 412 ----------------------------------------------------------------------~~~~l~~L~~ 421 (526)
T PF01602_consen 412 ----------------------------------------------------------------------REKILKKLIE 421 (526)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------hHHHHHHHHH
Confidence 0111112222
Q ss_pred Hcc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHh
Q 000051 1852 VRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILS 1929 (2612)
Q Consensus 1852 ~~~-D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~ 1929 (2612)
... -.+..++..++-++|......+. .. ..+.++..+...+...+..+|.....++.++....+.. ..+.+.+.+.
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 222 23445677777777776654433 11 56667777777777778889999999999999887653 5678888888
Q ss_pred hhcC--CCChhHHHHHHHHHHH
Q 000051 1930 RGLK--DPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1930 ~~L~--d~~~~vR~~a~~aL~~ 1949 (2612)
.... +.++++|+.++..+.-
T Consensus 500 ~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 500 SLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp CHHHHS-SSHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHH
Confidence 8877 7899999999876553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-10 Score=151.25 Aligned_cols=460 Identities=19% Similarity=0.248 Sum_probs=310.9
Q ss_pred HccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhh
Q 000051 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931 (2612)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~ 1931 (2612)
.....+..+|+.+.-.|..+....+. .+.-..+.+.+-+.++++..|..|.++++.+. .+...+.+.|.+.+.
T Consensus 50 l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 50 LISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKL 122 (526)
T ss_dssp TCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHH
Confidence 44677888898888888888877665 33345667777789999999999999999876 556778899999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHh
Q 000051 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011 (2612)
Q Consensus 1932 L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~ 2011 (2612)
+.++++.||..|+.++..+... .++..... +++.+...+.|+++.|+.+|..++..+ + ..+.....+++.+...
T Consensus 123 l~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIYRK-DPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHH-CHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcc-CHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHH
Confidence 9999999999999999998765 33333221 688889999999999999999998888 2 1121111334443333
Q ss_pred c----cCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhH--hhHHHHHHHhcCC
Q 000051 2012 L----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGD 2085 (2612)
Q Consensus 2012 L----~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l--~~il~~Ll~~L~~ 2085 (2612)
| ...+.+ .....+..+....... ...- ..+++.+...+.+
T Consensus 197 L~~~l~~~~~~---------------------------------~q~~il~~l~~~~~~~-~~~~~~~~~i~~l~~~l~s 242 (526)
T PF01602_consen 197 LCQLLSDPDPW---------------------------------LQIKILRLLRRYAPME-PEDADKNRIIEPLLNLLQS 242 (526)
T ss_dssp HHHHHTCCSHH---------------------------------HHHHHHHHHTTSTSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchH---------------------------------HHHHHHHHHHhcccCC-hhhhhHHHHHHHHHHHhhc
Confidence 2 222211 1112222222211111 1111 3566666666666
Q ss_pred CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCC
Q 000051 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165 (2612)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~ 2165 (2612)
.++.+.-.+..++-.+.. ..+.+..+++.|...+.++++.+|..++.++..++...+..+. .....+..+..++
T Consensus 243 ~~~~V~~e~~~~i~~l~~--~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~ 316 (526)
T PF01602_consen 243 SSPSVVYEAIRLIIKLSP--SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDD 316 (526)
T ss_dssp HHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSS
T ss_pred cccHHHHHHHHHHHHhhc--chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCC
Confidence 666666555555543322 1234678899999999999999999999999999876532222 1112233334488
Q ss_pred ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHh-cCCHH
Q 000051 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI-SGSAE 2244 (2612)
Q Consensus 2166 d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~-~~~~~ 2244 (2612)
|..++..+.+.|..++.. +.+..+++.|...+. .++.+
T Consensus 317 d~~Ir~~~l~lL~~l~~~-----------------------------------------~n~~~Il~eL~~~l~~~~d~~ 355 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLANE-----------------------------------------SNVKEILDELLKYLSELSDPD 355 (526)
T ss_dssp SHHHHHHHHHHHHHH--H-----------------------------------------HHHHHHHHHHHHHHHHC--HH
T ss_pred ChhHHHHHHHHHhhcccc-----------------------------------------cchhhHHHHHHHHHHhccchh
Confidence 899999998888877642 122335555666663 34777
Q ss_pred HHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcC
Q 000051 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD 2324 (2612)
Q Consensus 2245 ~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d 2324 (2612)
.+..+..+++.++...+ .....++.. ++..+... ...+...+...+..++...+.. -......+.+.+.+
T Consensus 356 ~~~~~i~~I~~la~~~~-~~~~~~v~~----l~~ll~~~-~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 356 FRRELIKAIGDLAEKFP-PDAEWYVDT----LLKLLEIS-GDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLED 425 (526)
T ss_dssp HHHHHHHHHHHHHHHHG-SSHHHHHHH----HHHHHHCT-GGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTS
T ss_pred hhhhHHHHHHHHHhccC-chHHHHHHH----HHHhhhhc-cccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHH
Confidence 99999999999998775 344444433 45666643 4556777888888888775542 23356666777777
Q ss_pred -CCHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhh
Q 000051 2325 -STRTVRSSAALALGKLSALSTR---VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400 (2612)
Q Consensus 2325 -~~~~vR~~Aa~aLg~L~~~~~~---~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l 2400 (2612)
.++.++..+++.+|......+. ...++..+.+.....+..+|..++.++..+....+.. ...+.+...+....
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~---~~~~~i~~~~~~~~ 502 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN---EVQNEILQFLLSLA 502 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST---THHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch---hhHHHHHHHHHHHh
Confidence 4889999999999999766555 6666777777776666789999999999998876542 23457888888888
Q ss_pred c--CCCHHHHHHHHHHHHHH
Q 000051 2401 Y--HDDDHVRVSAASILGIM 2418 (2612)
Q Consensus 2401 ~--~~~~~vr~~aa~~Lg~L 2418 (2612)
. +.+.++|..|.+.+.-+
T Consensus 503 ~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 503 TEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHS-SSHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHH
Confidence 7 77999999888776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-08 Score=136.12 Aligned_cols=501 Identities=13% Similarity=0.109 Sum_probs=317.0
Q ss_pred HHhcCCCHHHHHHHHHHH-HHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHH
Q 000051 1892 SSLASSSSERRQVAGRAL-GELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2612)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL-~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l 1970 (2612)
+.|.+.+...|..+.+.+ ..+. .|.+ ...+.+-+.+.+.+++.++|.-+...+...... .+ +..--.++.+
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt--~G~D-vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~-~p----elalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMT--MGRD-VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL-QP----EKALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH--CCCC-chHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-Ch----HHHHHHHHHH
Confidence 334555555554443322 2221 2433 344555566677788888888877777654321 11 1223457778
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcc
Q 000051 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2612)
Q Consensus 1971 ~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~ 2050 (2612)
.+-+.|+++.+|..|.++++.+.. .
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~-------~------------------------------------------------ 135 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRV-------S------------------------------------------------ 135 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCc-------H------------------------------------------------
Confidence 888888999999888776654311 1
Q ss_pred hhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccc-cHHHHHHHHHhhcCCCChhHH
Q 000051 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE-GVESLVSELLKGVGDNQASIR 2129 (2612)
Q Consensus 2051 ~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~-~l~~ll~~Ll~~l~~~~~~vR 2129 (2612)
..++.+++.+.+.+.|.++-||..|+-|+..+.....+- .-..+++.|.+.+.|.|+.|.
T Consensus 136 -------------------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv 196 (746)
T PTZ00429 136 -------------------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVA 196 (746)
T ss_pred -------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHH
Confidence 112334455666778889999999999988886533221 112466677777889999999
Q ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhh
Q 000051 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2612)
Q Consensus 2130 ~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2612)
.+|+.++..+.+..+..+ ......+..++..+.+-++-.+-...+.|.. ..|.+
T Consensus 197 ~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~---------------------- 250 (746)
T PTZ00429 197 SNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSD---------------------- 250 (746)
T ss_pred HHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCC----------------------
Confidence 999999999987655333 2344555666666655444333333333322 11110
Q ss_pred hhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHH
Q 000051 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2612)
Q Consensus 2210 ~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk 2289 (2612)
......++..+...+.+.++.+--.++.++-.+.....++.++..+..+..||+.++. .+++++
T Consensus 251 --------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiq 314 (746)
T PTZ00429 251 --------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR--RDAETQ 314 (746)
T ss_pred --------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHH
Confidence 0111234555555667778888777888777766544334444555567788888754 367899
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHH
Q 000051 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 2369 (2612)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~ 2369 (2612)
-.++..+..++...+..+.+ -...|.-..+|++. ||......|-.++. ..++..++.+|..-+.+.|.+.+..+
T Consensus 315 yvaLr~I~~i~~~~P~lf~~----~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~a 388 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLLRT----NLDSFYVRYSDPPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEV 388 (746)
T ss_pred HHHHHHHHHHHHHCHHHHHH----HHHhhhcccCCcHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999888876643332 25566666788775 89999888888754 46788999999998888888999999
Q ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhc---CCCCchhh
Q 000051 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA---SSPSWAAR 2446 (2612)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~---~~~~~~~~ 2446 (2612)
+.|++.+..+. +...+.+++.|.+.+.+..+ +...+...+-.+....|+.. ++..+.... .-.+...+
T Consensus 389 IrAIg~lA~k~-----~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AK 459 (746)
T PTZ00429 389 VRAIASLAIKV-----DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAK 459 (746)
T ss_pred HHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHH
Confidence 99999987664 44667888888888876544 33346677777777777642 233333211 12333345
Q ss_pred HHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhc-
Q 000051 2447 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL- 2525 (2612)
Q Consensus 2447 ~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l- 2525 (2612)
...++.++.... .+- -...++..+.+...++.+.+|-..+.+..++...... .....+..++...
T Consensus 460 aaiiWILGEy~~----~I~---~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-------~~~~~l~~vL~~~t 525 (746)
T PTZ00429 460 VSLLWMLGEYCD----FIE---NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-------GMEPQLNRVLETVT 525 (746)
T ss_pred HHHHHHHHhhHh----hHh---hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHH
Confidence 555555555432 221 1234555555666677889999999999998876421 2344555566432
Q ss_pred -CCCCHHHHHHHHHHHHHHHh
Q 000051 2526 -HDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2526 -~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
.++++|||..|..-.+-+..
T Consensus 526 ~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 526 THSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred hcCCChhHHHHHHHHHHHHcC
Confidence 46888999999987665543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-07 Score=125.19 Aligned_cols=493 Identities=12% Similarity=0.078 Sum_probs=308.0
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcc-hHhHHH
Q 000051 1225 LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVD 1303 (2612)
Q Consensus 1225 l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~-~~~i~~ 1303 (2612)
+.+++...|..++.-+...+. .|.+ +..+++-+-+.+... +-.+|.-+..++..++ +.+|. .--.+.
T Consensus 41 L~s~~~~~kk~alKkvIa~mt-~G~D-vS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaIN 108 (746)
T PTZ00429 41 LNGTDSYRKKAAVKRIIANMT-MGRD-VSYLFVDVVKLAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVN 108 (746)
T ss_pred HHCCCHHHHHHHHHHHHHHHH-CCCC-chHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHH
Confidence 345555555444444333322 3543 455555555555431 2345655555554443 33444 334578
Q ss_pred HHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHH
Q 000051 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2612)
Q Consensus 1304 ~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L 1383 (2612)
.+.+-+.++++.+|..+.++++.+. ..+-.+.++..+.+.+. +.+.-+|+.|+.|+..+....+. .+....+.+.|
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~L 184 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEYTLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKDL 184 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCcc-cccccchHHHH
Confidence 8999999999999999998887542 11112334444444454 44567999999999998765442 22223577888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HHhHHhHHH
Q 000051 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLP 1461 (2612)
Q Consensus 1384 ~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp 1461 (2612)
.+++.+. |+.+...|+.++..+.+..+..+. .....+..++..+.+-++--+-...+. +....+ ......++.
T Consensus 185 ~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~l---L~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 185 VELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILEL---LAAQRPSDKESAETLLT 259 (746)
T ss_pred HHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHH---HHhcCCCCcHHHHHHHH
Confidence 8888877 899999999999999876654332 234445556666665554444433333 333222 223467777
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHhhC-chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
.+...|.+.+..+..+|+.++..+.... ++.....+..+.+.++.+ ..+.+++|-.+.+.+..+....+ ..+...+.
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~ 337 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLD 337 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHH
Confidence 8888888888888888888887776432 333334444455555555 45678999999999988876442 23344455
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhh
Q 000051 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2612)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2612)
.+.-..+||.. ++ ..++.+... .++.....++..|.....+.+.+.++.+..++|.++..+. ...+.
T Consensus 338 ~Ff~~~~Dp~y-IK~~KLeIL~~L-----ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~ 405 (746)
T PTZ00429 338 SFYVRYSDPPF-VKLEKLRLLLKL-----VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPD 405 (746)
T ss_pred hhhcccCCcHH-HHHHHHHHHHHH-----cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHH
Confidence 55556678765 55 567666531 2344566788888888889999999999999999987542 24556
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHhChhhHHhH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L--~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2612)
++..|.+++.+... +...++..+..+.+.....+ +++.+...+ ..-.....|...++.+|+.+..... ...+
T Consensus 406 cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~ 479 (746)
T PTZ00429 406 CANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDI 479 (746)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHH
Confidence 77777777776544 34467788888877665432 455555433 2222344566667778887654422 2445
Q ss_pred hHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhc-C-CCChhHHHHHHHHHH
Q 000051 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGH 1762 (2612)
Q Consensus 1698 lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L-~-d~~~~VR~~Al~al~ 1762 (2612)
+..++....+.++.||-..+.+...+.-..+.+.. ..+..++..+ . +++.+||+-|.--.+
T Consensus 480 L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 480 IQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 55555655667888998877777777666554333 3444455433 3 466799998865444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-10 Score=136.07 Aligned_cols=253 Identities=17% Similarity=0.148 Sum_probs=170.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000051 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2612)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2612)
.+.|...|.|++..||..++..|..+ ++ +..++.+.. +.++++...|..|+++|+.+-..- ... ...++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~~--~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~--~~~--~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----GG--QDVFRLAIE-LCSSKNPIERDIGADILSQLGMAK--RCQ--DNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----Cc--chHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCc--cch--HHHHH
Confidence 56678888999999999998887643 21 223333333 455666789999999988753211 111 14667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHH
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2612)
.|...+.++.++.+|..|+.++|.++.... .+....++.+...+.|+++.||..+..+++.+ +-...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-------~~~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-------NDEAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-------CCHHHHH
Confidence 777664444489999999998888753222 12335666677788888999999888888655 2245678
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHH
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~ 1541 (2612)
.|+..+.+++|.+|..|+..||.+.+.. +.+++.|...++|.+..||..|..+|+.+.. ...+|.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~ 227 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSV 227 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHH
Confidence 8888888888888888888888773322 4566778888888888888888888887643 134455
Q ss_pred HHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhH
Q 000051 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2612)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll 1621 (2612)
|++.+.++ + ++..++.++|.+.. +..+
T Consensus 228 Li~~L~~~---------------------------------------~--~~~~a~~ALg~ig~------------~~a~ 254 (280)
T PRK09687 228 LIKELKKG---------------------------------------T--VGDLIIEAAGELGD------------KTLL 254 (280)
T ss_pred HHHHHcCC---------------------------------------c--hHHHHHHHHHhcCC------------HhHH
Confidence 55444433 2 34556666666533 2366
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHH
Q 000051 1622 PEVKKVLV-DPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1622 ~~L~~~L~-d~~~~VR~~A~~aL~ 1644 (2612)
|.|..++. ++++.|+..|..++.
T Consensus 255 p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 255 PVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHh
Confidence 77777775 677888888777664
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-06 Score=113.56 Aligned_cols=639 Identities=15% Similarity=0.172 Sum_probs=347.3
Q ss_pred ChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHH-HHHHH--------HHHHhcC
Q 000051 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV-AEAAE--------DIWDRYG 1125 (2612)
Q Consensus 1055 ~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~--------~~w~~~~ 1125 (2612)
..+++.+.+.+++.+|+..|++|+++|.+.... |.... ..+.+..-|..+.+ |..|. +.|+...
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgFv~--~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGFVS--SLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcHHH--HHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 346788899999999999999999999976421 22222 23334445554444 33332 4587662
Q ss_pred -----CCCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000051 1126 -----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2612)
Q Consensus 1126 -----~~~~~~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 1194 (2612)
+.++++ + ..++.++.+....+|-....++-.++ ..+|+.|+.++.......+ . .....-
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----s------~~~~~v 144 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----S------QDANHV 144 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----C------cchhhH
Confidence 223322 4 57888888889999999998887765 4688888888877765432 1 121234
Q ss_pred hHHHHHHHHhhhhhC--CC----ChhHH----HHHHHh---hhcCCCcHHHH---HHHHHHHHHHHHh-h-----Ccchh
Q 000051 1195 QGIALALHSAADVLR--TK----DLPVI----MTFLIS---RALADTNADVR---GRMLNAGIMIIDK-H-----GRDNV 1252 (2612)
Q Consensus 1195 ~~~~~al~~~~~~~~--~~----~~~~i----~~~li~---~~l~d~~~~VR---~~~~~a~~~~i~~-~-----g~~~~ 1252 (2612)
.++..++..++...+ .+ .+..+ +..+.. +-+.+.+.... ...+......+-. . ..+..
T Consensus 145 y~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f 224 (1010)
T KOG1991|consen 145 YGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETF 224 (1010)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhH
Confidence 677888888876432 11 11111 122211 22334433322 2223322222211 1 12334
Q ss_pred hhhHHHHHHHhccCCCCh--HHhhh---------HHhHHHHHHHHHhhhhc-cCC--c------------chHhHHHHHH
Q 000051 1253 SLLFPIFENYLNKKASDE--EKYDL---------VREGVVIFTGALAKHLA-KDD--P------------KVHAVVDKLL 1306 (2612)
Q Consensus 1253 ~~Llp~~~~~l~~~~~~~--~~~d~---------vr~~~i~~l~~La~~l~-~~~--~------------~~~~i~~~L~ 1306 (2612)
..-+.+|-..++.+-+.+ +.+.. .+.=+...+.++..... ... + ..+.+.+.++
T Consensus 225 ~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 225 TSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555656665543322 11111 23333444444443322 111 1 1122222222
Q ss_pred Hhc---CC---CCHHHHHHHHhhhHHhH------hhhcchhHHHHHH-HHHHhhc---------CC--------------
Q 000051 1307 DVL---NT---PSEAVQRAVSSCLSPLM------QSMQDEAPTLVSR-LLDQLMK---------SD-------------- 1350 (2612)
Q Consensus 1307 ~~L---~~---~~~~Vq~~~~~~L~~lv------~~~~~~~~~li~~-ll~~L~~---------~~-------------- 1350 (2612)
+.+ +. -++.|-.-+..-+...+ +.++++..-++.. ++..+.- .+
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 222 22 12333222222221111 1111111111111 1111110 00
Q ss_pred ChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--cchhhHH-H
Q 000051 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVI-Q 1420 (2612)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~-------~~~~~~~R~~Al~al~~L~~~~~~--~~~~~v~-~ 1420 (2612)
-+..+-+|...+-.+++..|...+. .++.++.+.+. +.++++..+||+.+++.+++.+.+ .+...+. -
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f 462 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF 462 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH
Confidence 1233457778888888888888886 68888887775 234788999999999999987763 2334344 3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHHh-HHhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCc---hhhh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p---~~l~ 1494 (2612)
+++++++.|.++.-..|..|+..+..+. ..++... ....+....+.|. +.+-.+|..|+.+|..+....+ ..++
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 6778889999999999999999988887 4566554 3677777777777 7778999999999999888755 4488
Q ss_pred hhhchhHHHHhhhhcCCCHHHHHHHHHHH-HHHHhhcCC--hh-HhhHHHHHHhhcCC---CChhHH-HHHHHHH--hc-
Q 000051 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PE-IASLVPTLLMGLTD---PNDHTK-YSLDILL--QT- 1563 (2612)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~-i~~ivp~Ll~~l~d---~~~~~r-~al~~L~--~~- 1563 (2612)
+++|.++..++.+.++.+.+.-....+.+ +.+++.+.. .+ .+.+...+.+.+.+ .++... .++.+++ .+
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti 622 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTI 622 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence 99999999999999887666555544433 455554431 12 25566666666653 111111 1211111 00
Q ss_pred -ccccc------CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHH
Q 000051 1564 -TFVNT------VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2612)
Q Consensus 1564 -~~~~~------i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR 1636 (2612)
+.... +....-+.+.|.+...+...-.+.-..++.++..+.-. .+++.|-.=++++.+.+++.+.
T Consensus 623 ~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~~----- 694 (1010)
T KOG1991|consen 623 STILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQDD----- 694 (1010)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhhh-----
Confidence 01000 11111123334444444444344444444444433211 1233333333444444444332
Q ss_pred HHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC--CChhhHh
Q 000051 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRD 1714 (2612)
Q Consensus 1637 ~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~--~~~~vR~ 1714 (2612)
|-+|+++++|.+-+.+.-+.+. ... .+.+...++.-+.+.+.+ ....-.+
T Consensus 695 --------------~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~~ 746 (1010)
T KOG1991|consen 695 --------------GIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDCE 746 (1010)
T ss_pred --------------hHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHHH
Confidence 2347788888776655544322 000 011122222222233333 3445567
Q ss_pred HHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCC
Q 000051 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2612)
Q Consensus 1715 ~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d 1748 (2612)
+++.++..+...+++....|++..+...+..+..
T Consensus 747 ~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 747 SACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 8899999999999887778888877777777765
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=156.04 Aligned_cols=273 Identities=22% Similarity=0.251 Sum_probs=200.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
.++.++..+.|+++.||..|..++..+. -...+|.|...|.++++.+|..|+..|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 4567778889999999999999988762 245678888889999999999999999887643221
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHH
Q 000051 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
.+.+...|+|+++.||.+|+.+|+.+... + ...+.+.+.|++..+| .++.+|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAG--D------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccC--C------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 24566778899999999999999987521 1 2356677889988888 577777641 11 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll 1659 (2612)
.+...+.|.++.+|..++..|+.+... . ....+.+..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778899999999999999887542 1 1135667788889999999999999988632 1 2233
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHH
Q 000051 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2612)
Q Consensus 1660 ~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~ii 1739 (2612)
+.+...+.++ +..+|..++++|+.+- . ++.++.+...+.++++.||..+..+|+.+. +. +...
T Consensus 810 ~~l~~aL~d~-d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRAS-AWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 4455666554 4568888888887642 1 234567778888899999999998888851 11 3456
Q ss_pred HHHHhhcCCCChhHHHHHHHHHH
Q 000051 1740 PAILDGLADENESVRDAALGAGH 1762 (2612)
Q Consensus 1740 p~ll~~L~d~~~~VR~~Al~al~ 1762 (2612)
+.+...+.|++..||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 67778888888999998888775
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-09 Score=130.06 Aligned_cols=382 Identities=18% Similarity=0.172 Sum_probs=263.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-cchh-hHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHh---
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGR-LFEP-YVIQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG--- 1455 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~-~~~~-~v~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~--- 1455 (2612)
.+.+.+.+. +...+..+...|..+...-.. .... ....++|.+..++. +.++.++..|+.++..+++..+...
T Consensus 70 ~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 344444444 466666777767666544332 1111 12268999999996 7789999999999999988666552
Q ss_pred H-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCH-HHHHHHHHHHHHHHhhcC-
Q 000051 1456 V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIK- 1531 (2612)
Q Consensus 1456 v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~-~VR~aA~~aL~~l~~~~~- 1531 (2612)
+ ...+|.++..+.+++-.++.-|+++||.++...|..-.-.+ ..+++.|+..+...++ .....+.++|.++++.-.
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 1 56788899999999999999999999999987665322222 3567778888877665 567788999999987642
Q ss_pred ChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCC
Q 000051 1532 NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2612)
Q Consensus 1532 ~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~ 1611 (2612)
.|.+. ....++|.|.+.+.+.+.++...|+.++..+... .++
T Consensus 229 ~P~~~------------------------------------~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne 270 (514)
T KOG0166|consen 229 SPPFD------------------------------------VVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNE 270 (514)
T ss_pred CCcHH------------------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChH
Confidence 12111 1233556666666777778888888888887763 222
Q ss_pred cchhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000051 1612 DMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2612)
Q Consensus 1612 ~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~ 1686 (2612)
...-. -..++|.+..+|.++.+.++..|.+++|.++...+.. .-...+|.+...+........|..++..++.+.
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 22211 2358899999999999999999999999987654432 124667888887875555557889999999998
Q ss_pred HHhChh---hH-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHh--HHHHHHhhcCCCChhHHHHHHHH
Q 000051 1687 AALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGA 1760 (2612)
Q Consensus 1687 ~~~g~~---~l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~--iip~ll~~L~d~~~~VR~~Al~a 1760 (2612)
.+-... .+ ..++|.++..+...+..+|..+..+++.++.....+-..|+-. +++++...|.-.+..+-..++.+
T Consensus 351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 743322 11 4688999999999999999999999998887665655667544 89999999977777777777888
Q ss_pred HHHHHHHhhhch------hhh------hHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1761 GHVLVEHYATTS------LPL------LLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1761 l~~lv~~~~~~~------i~~------llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
+..+.+...... ... -+..++..-.+++..+...|...+...
T Consensus 431 l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 431 LENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 777665322111 111 122233333455656666666666665
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=131.53 Aligned_cols=222 Identities=19% Similarity=0.154 Sum_probs=128.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhH
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2612)
++.|...+.++ |..+|..|+.+|+.+.. ..+++.+...+.|+++.+|..+..+++.+... .......
T Consensus 25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~--~~~~~~a 91 (280)
T PRK09687 25 DDELFRLLDDH-NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMA--KRCQDNV 91 (280)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--ccchHHH
Confidence 34455566666 78888888887765431 34566677777888888888888888876321 1112345
Q ss_pred HHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhH
Q 000051 1460 LPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2612)
Q Consensus 1460 lp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2612)
+|.|... +++++|.+|..++.+||.+....+. ..+..++.+...+.|+++.||..++.+|+.+.. ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHH
Confidence 6666655 5677788888888888776432211 124455566667778888888888888865542 234
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1539 vp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
++.|+..+.|++..+| .|+.+|+.... .-+.+.+.|...+.|.++.+|..|...|+.+..
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~~~-------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------------ 221 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSNKY-------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------------ 221 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------------
Confidence 5666666666655555 34444443100 012344555555555555555555555554321
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~VR~~A~~aL~~L 1646 (2612)
+..+|.|.+.+.+++ +|..++.++|.+
T Consensus 222 ~~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 222 KRVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred hhHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 124455555555543 444455555543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-09 Score=152.24 Aligned_cols=274 Identities=22% Similarity=0.231 Sum_probs=203.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHH
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~ 1380 (2612)
.++.|.+.|.|+.+.||..+++.|+.+- .+..++.|...| ++++..+|..|+.+|..+...... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------h
Confidence 4567888899999999999999987652 234556666555 556688999999999887543221 1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHH
Q 000051 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2612)
Q Consensus 1381 ~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2612)
+.+...++++ |+.+|..|+.+|+.+.. +. ...++..+.|+++.||.+|..++..+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 2345556665 89999999988887641 11 1245678899999999999999887511 1
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
+.+...+.++++.+|..++..|+.+....+ ..++.|..+++|+++.||.+|..+|+.++.. ....+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 345677889999999999999988754322 2256678889999999999999999988642 22345
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhh
Q 000051 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2612)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2612)
.+...+.|+++.+| .|+.+|... .. ...++.|...++|+++.||..|..+|+.+. ++ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l------~~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA------AA---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc------cc---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 67788889988888 477777541 11 235688888899999999999999998751 12 23
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2612)
..+.|...++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 67778888999999999999998864
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-09 Score=130.41 Aligned_cols=343 Identities=20% Similarity=0.246 Sum_probs=246.2
Q ss_pred HHHHHhcCCCCHHHHHHHHhhhHHhHhhhcc-h-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc--chh
Q 000051 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-E-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2612)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~-----~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l 1374 (2612)
+.++..+....+..|..+..++..+...... . ....++.+.+.|...++...+..|+++|..++.+... ..+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3444444444444466666665555433221 0 1246778888887666678899999999999987542 223
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHh
Q 000051 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVV--AVREAAECAARAMMSQ 1450 (2612)
Q Consensus 1375 ~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~--~VR~aa~~al~~i~~~ 1450 (2612)
.....++.+..++.+. +..+|+.|+.+++.++...+ .+..|+. .+++.++..+..+.. .+|.++|..-..|-..
T Consensus 149 v~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 3346777788888888 78999999999999985443 4667776 578888888876664 6776666555555333
Q ss_pred hc--H-HhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1451 LS--A-QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1451 l~--~-~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
-+ + ..+..++|.|...+.+.+-.+...+|+++..++.+.++.+...+ ..++|.|.++|....+.|+..|.+++|++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 12 2 25699999999999999999999999999999988887766554 47899999999999999999999999997
Q ss_pred HhhcCCh--hH--hhHHHHHHhhcC-CCChhHH-HHHHHHHhccccc--cCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1527 GSVIKNP--EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1527 ~~~~~~~--~i--~~ivp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~--~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
+..-... .+ ...+|.|...+. .|.++.+ +|+.++.+.+... .++.-.-+.++|.|...+...+.++|+.|+.
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 7542211 11 457788888887 6666666 6888877632211 1222233578999999999999999999999
Q ss_pred HHHHHhhccCCCCcchhhH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1599 IVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
++++++.. +.+ +-..|+ ..+++.+..+|.-++..+-..+..++..+...
T Consensus 387 aIsN~ts~-g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 387 AISNLTSS-GTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHhhccc-CCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 99999875 343 333443 34788888888777777777888888877664
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-05 Score=100.30 Aligned_cols=563 Identities=17% Similarity=0.192 Sum_probs=285.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHH--------HHHHHhcC--C
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYG--Y 1126 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--------~~~w~~~~--~ 1126 (2612)
+.+-.+|.|.+|||.++|.+|+.++....+.. .....+.++- +.++..-..|++| +.+|..+. +
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~-----~f~~aL~~va-~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELTE-----GFGVALAEVA-ANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccch-----HHHHHHHHHH-hCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 56788999999999999999999999875321 1112222322 1223333344443 46786532 2
Q ss_pred CCCC----C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000051 1127 DFGT----D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2612)
Q Consensus 1127 ~~~~----~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2612)
..++ + + ..|+..+.+++..+|.+++.++..++. .||+.|++++..+..+... .+...-++
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~~ 147 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIHG 147 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhhh
Confidence 2222 1 3 456677788999999999999998865 6999999999999876431 12235577
Q ss_pred HHHHHHHhhhhhCC--------CChhHHHHHH-HhhhcCCC--cHHHHHHHHHHHHHHHHhhCcc---h----hhhhHHH
Q 000051 1197 IALALHSAADVLRT--------KDLPVIMTFL-ISRALADT--NADVRGRMLNAGIMIIDKHGRD---N----VSLLFPI 1258 (2612)
Q Consensus 1197 ~~~al~~~~~~~~~--------~~~~~i~~~l-i~~~l~d~--~~~VR~~~~~a~~~~i~~~g~~---~----~~~Llp~ 1258 (2612)
++.++..+...... -....+...+ +..-.++. -...|......+...+..++.- + +..+++.
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~ 227 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQ 227 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888877653321 1111211111 01111121 1122223333444444444431 2 2333444
Q ss_pred HHHHhccC---CCChHHhhhHHhHHHHHHHHHhhhhccC-CcchHhHH--------------------------------
Q 000051 1259 FENYLNKK---ASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV-------------------------------- 1302 (2612)
Q Consensus 1259 ~~~~l~~~---~~~~~~~d~vr~~~i~~l~~La~~l~~~-~~~~~~i~-------------------------------- 1302 (2612)
|-..+... ..+ .+-..|.....++..+...++.. .+.+...+
T Consensus 228 ~~~~l~h~l~~~~g--~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~ds 305 (1005)
T KOG2274|consen 228 FMDILEHPLQRNDG--SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDS 305 (1005)
T ss_pred HHHHHhhhhccccc--chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCC
Confidence 43333321 111 11122333333333333222211 11111000
Q ss_pred -----------HHHHHhcCCC--CHHHHHHHHhhhHHhHhh----h---cchhHHHHHHHHHHhhcCCC-hHHHHHHHHH
Q 000051 1303 -----------DKLLDVLNTP--SEAVQRAVSSCLSPLMQS----M---QDEAPTLVSRLLDQLMKSDK-YGERRGAAFG 1361 (2612)
Q Consensus 1303 -----------~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~----~---~~~~~~li~~ll~~L~~~~~-~~~R~~Aa~~ 1361 (2612)
-.++++++.- +..+..++.+.+++++.. . .+....+....-+...+.++ +..|..+...
T Consensus 306 d~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~ 385 (1005)
T KOG2274|consen 306 DPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDL 385 (1005)
T ss_pred chhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHH
Confidence 0000100000 000111111111111110 0 00001111111111112222 3566666666
Q ss_pred HHHHHhhhCcchhhhhcHHHH----HHH-----HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC-
Q 000051 1362 LAGVVKGFGISSLKKYGIAAT----LRE-----GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD- 1431 (2612)
Q Consensus 1362 L~~l~~~lg~~~l~~~~i~~~----L~~-----~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D- 1431 (2612)
+-.+....|...+. .+.+. +.. .......|...++-+.+.+... .++....+...+...+...+.-
T Consensus 386 ~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~~ 461 (1005)
T KOG2274|consen 386 LLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVYQ 461 (1005)
T ss_pred HHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhcccc
Confidence 66777777765543 22222 221 1223334555554444444433 3333344555555555555542
Q ss_pred CCHHHHHHHHHHHHHHHHh--hcHHhHHhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh
Q 000051 1432 QVVAVREAAECAARAMMSQ--LSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2612)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~--l~~~~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L 1508 (2612)
..|..--.+..++....+. ..+.-...++-..+..+. +.....|.+++.++..+ |.++.+.+.+|.|+..+.++.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~--~~~~vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGY--CKVKVLLSLQPMILDGLLQLA 539 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhc--cCceeccccchHHHHHHHHHc
Confidence 2333333444444444433 222233444444455544 33445676777666543 467778888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCChhH-----hhHH----HHHHhhcCCCChh--HHHHHHHHHhccccccCChhhHhhH
Q 000051 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLV----PTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLALL 1577 (2612)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~iv----p~Ll~~l~d~~~~--~r~al~~L~~~~~~~~i~~~~l~~i 1577 (2612)
.+...+|-..-.++|...++.- |+. ..+. ..+.+...||.-. ..++++.+.+. .....+.....
T Consensus 540 s~~s~evl~llmE~Ls~vv~~d--pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~---~~~~g~m~e~~ 614 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLD--PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI---AANYGPMQERL 614 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccC--hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHhhcchHHHH
Confidence 9999999999999999888753 322 2334 4445556677321 12445544431 11123455667
Q ss_pred HHHHHHhhcCCC----HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh
Q 000051 1578 VPIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1578 ip~L~~~l~d~s----~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
+|.+..-+.... ...-..+.+++..+.+. +.+.--...+....|.+.++.- ..+..+-..+.+||.+++..
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 888888776554 56667788888888775 3322223345556777766644 45667778889999988875
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-05 Score=97.89 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=76.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHH------HHHHHHhcCCC---
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA------AEDIWDRYGYD--- 1127 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------a~~~w~~~~~~--- 1127 (2612)
+.+...|..+++||+++|..+|++|.+...- ++. .+.++..+-....|.....++. .++.|....-.
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y--~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNY--PLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccC--CCc--hHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 5678889999999999999999999876421 222 3445555555555544443332 23578654322
Q ss_pred CCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHH
Q 000051 1128 FGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLY 1176 (2612)
Q Consensus 1128 ~~~~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~ 1176 (2612)
+.+. + ..++...-+....++....+|+.-+.+ .+|+.|+.++..|.+..
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~l 135 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARL 135 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhc
Confidence 2222 3 334444456678999999999988874 57888888888877653
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00039 Score=89.65 Aligned_cols=683 Identities=15% Similarity=0.173 Sum_probs=326.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH--HHHHHHhcccc------ccCChhhHhhHHHHHH
Q 000051 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFV------NTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~--al~~L~~~~~~------~~i~~~~l~~iip~L~ 1582 (2612)
++|.+|+.|-++|.+.... ..+.-.++..+-+.-.|++-++-. +.+..++-... +.+.+..-..+-..+.
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv 94 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIV 94 (960)
T ss_pred CCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHH
Confidence 4578888888888877643 122233333333322232222111 12222221111 1222233334444555
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-----c--
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----F-- 1655 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-----~-- 1655 (2612)
..+-+....++....++++-+++. |+-.-.|.++|-+...++..+-.+-......-.++.+.....+ +
T Consensus 95 ~lMl~s~~~iQ~qlseal~~Ig~~-----DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~E 169 (960)
T KOG1992|consen 95 TLMLSSPFNIQKQLSEALSLIGKR-----DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLE 169 (960)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence 555556677887777888777652 5555678899999999887666655555555555666554321 1
Q ss_pred ------------hhhHHHHHHHhccCCCHHH--H--HHHHHHHHHHHHHhC----h----hhHHhHhHHHHHhccCC---
Q 000051 1656 ------------PDLVSWLLDALKSDNSNVE--R--SGAAQGLSEVLAALG----T----VYFEHILPDIIRNCSHQ--- 1708 (2612)
Q Consensus 1656 ------------~~ll~~L~~~L~~~~~~~~--R--~~aa~~L~~i~~~~g----~----~~l~~llp~l~~~~~~~--- 1708 (2612)
.+++...++..+...+... + .++..-+..+.-.+. + +.++..|+.+.+.+...
T Consensus 170 IK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~ 249 (960)
T KOG1992|consen 170 IKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPL 249 (960)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcc
Confidence 1111122222222211110 0 011111122222221 1 23345566666655422
Q ss_pred ----------ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh-----hHHHHHHHHHHHHHHH--hhhc
Q 000051 1709 ----------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE-----SVRDAALGAGHVLVEH--YATT 1771 (2612)
Q Consensus 1709 ----------~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~-----~VR~~Al~al~~lv~~--~~~~ 1771 (2612)
-..+|...|..+.-.+....+.|.||+++++......+.+-.. .+...|+..+..+++. |..
T Consensus 250 le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~- 328 (960)
T KOG1992|consen 250 LESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAE- 328 (960)
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHh-
Confidence 1346778888888888889999999999999888888765433 3444555555554432 110
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH--hcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHH
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~--~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L 1849 (2612)
...++ ..+..+... +++.. .. ++|+|-+. ++.+.-+
T Consensus 329 -----------~F~~~---------~vl~~i~e~VvlpN~~----lR-~eDeElFE-----------------D~pleYi 366 (960)
T KOG1992|consen 329 -----------LFEGE---------NVLAQICEKVVLPNLI----LR-EEDEELFE-----------------DNPLEYI 366 (960)
T ss_pred -----------hhcch---------HHHHHHHHhhcccccc----cc-hhhHHHhc-----------------cCHHHHH
Confidence 00000 011111111 11110 00 00100000 0011111
Q ss_pred HHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhchh-----
Q 000051 1850 YMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGER----- 1919 (2612)
Q Consensus 1850 ~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~~----- 1919 (2612)
-..+ +|. ..-|++|++.++.+..+.......++..-++.+++... +.+|..+..+...+..+..+.+..
T Consensus 367 RRDlEGsDv-dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvt 445 (960)
T KOG1992|consen 367 RRDLEGSDV-DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVT 445 (960)
T ss_pred HHhcccCCc-chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhccee
Confidence 1111 232 23578899999999998866555666655555555443 456777777777666666543211
Q ss_pred -----------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHH
Q 000051 1920 -----------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988 (2612)
Q Consensus 1920 -----------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~a 1988 (2612)
+...++|-|..--..+.|-.|.+++.-+...-...+ .+++-.++|.+.+.+..+..-|...|+.+
T Consensus 446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 123444444432122345556665543322111122 45667788888899988888999999999
Q ss_pred HHHHHHHh--------Chhhhhh----hHHHHHHhccCCC--cchHHHHHHHHHhhhcccccccccchhhccCCcchhHH
Q 000051 1989 FSTLFKSA--------GMQAIDE----IVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054 (2612)
Q Consensus 1989 l~~l~~~~--------g~~~~~~----ilp~Ll~~L~~~~--~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~ 2054 (2612)
+.++.... |+..+.+ ++..+++.+..++ +.++-..++..+++
T Consensus 522 iEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~------------------------ 577 (960)
T KOG1992|consen 522 IEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS------------------------ 577 (960)
T ss_pred HHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH------------------------
Confidence 99885332 2222222 1222222222222 12333333333332
Q ss_pred HHHHHHHHHhCCChhhhHhhHHHHHHHhc----CC-CCHHHHHHHHHHHHHhhhhccccc-------HHHHHHHHHhhcC
Q 000051 2055 HALGALAEVAGPGLNFHLGTILPALLSAM----GD-DDMDVQSLAKEAAETVTLVIDEEG-------VESLVSELLKGVG 2122 (2612)
Q Consensus 2055 ~al~~La~~~g~~l~~~l~~il~~Ll~~L----~~-~~~~vr~~a~~al~~l~~~~~~~~-------l~~ll~~Ll~~l~ 2122 (2612)
+..++..|+.+.+++.|.+.+ +. .++.--....++++.++......+ ...++|.+..-+.
T Consensus 578 --------i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~ 649 (960)
T KOG1992|consen 578 --------ILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS 649 (960)
T ss_pred --------hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence 222233333333333333322 11 223333334444444444332111 1223333333333
Q ss_pred CCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2123 ~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
++-...--.+...++.+.+.+...+.+.+..+++.|+. + +.|+ - +...|.++..++..+..
T Consensus 650 eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLs----p------~lW~----r-----~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 650 EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLS----P------NLWK----R-----SGNIPALVRLLQAFLKT 710 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcC----H------HHHh----h-----cCCcHHHHHHHHHHHhc
Confidence 32223333455555666555444333333333333221 0 1111 0 11223333333222221
Q ss_pred hhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC
Q 000051 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~ 2282 (2612)
.. ..+. -.+.+.+++.+|...+.+...+ ..+...+..++...+...+.||+.+|.+-|.+-++.
T Consensus 711 g~-----------~~~~---~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 711 GS-----------QIVE---AADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQN 774 (960)
T ss_pred Cc-----------hhhc---ccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhc
Confidence 10 0011 0133566777777666654433 457888999999999888999999999999988876
Q ss_pred CCCHh-HHHHHHHHHHHHHHhcCCCccCchHHHH
Q 000051 2283 RFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQ 2315 (2612)
Q Consensus 2283 ~~~~~-vk~~al~~L~~L~~~~~~~l~p~lpqL~ 2315 (2612)
+..+. +|.......-...++.|..+....+.++
T Consensus 775 skT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ 808 (960)
T KOG1992|consen 775 SKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQ 808 (960)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 54444 3443333333333344433333333333
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-05 Score=102.31 Aligned_cols=490 Identities=19% Similarity=0.191 Sum_probs=285.8
Q ss_pred HHHHhcCCCHHHHHHHHH-HHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHH
Q 000051 1890 LISSLASSSSERRQVAGR-ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2612)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~-aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~ 1968 (2612)
|..+|.+.....+..|.+ .++-+++ |.+ ...++|...+-..+++.++|.-+-.-|-...+.-....+ --+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~--G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSIn 111 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK--GKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSIN 111 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHH
Confidence 334455555444444443 3333332 222 566777777777788999998877666654433221111 1256
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCC
Q 000051 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2612)
Q Consensus 1969 ~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~ 2048 (2612)
.+.+.|.|+++.+|..|.+++..+-- .-+.|.
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI----------------------------------------- 143 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRV-------PMIAPI----------------------------------------- 143 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHH-----------------------------------------
Confidence 77889999999999998887765411 111111
Q ss_pred cchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhH
Q 000051 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASI 2128 (2612)
Q Consensus 2049 ~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~v 2128 (2612)
++-++-+...|..+.||..|+.|+-.+-. .+.+.-+.+...+-..+.|.++.|
T Consensus 144 --------------------------~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splV 196 (968)
T KOG1060|consen 144 --------------------------MLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLV 196 (968)
T ss_pred --------------------------HHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcc
Confidence 11112223456778888888888877643 344444577777777888999999
Q ss_pred HHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhh
Q 000051 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208 (2612)
Q Consensus 2129 R~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~ 2208 (2612)
--+|+.++..+|-.. .+.+..-.+.++.++-|-|+==+......|.+.++..-.+- ..+ ...+ ++..
T Consensus 197 vgsAv~AF~evCPer----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P--~~~---~~~~---e~n~- 263 (968)
T KOG1060|consen 197 VGSAVMAFEEVCPER----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP--TVV---DSSL---EDNG- 263 (968)
T ss_pred hhHHHHHHHHhchhH----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc--ccc---cccc---ccCc-
Confidence 999998888777432 12233444556666655443223334455555544321110 000 0000 0000
Q ss_pred hhhcCCcccccCCCCCcCchhhHHHHHH----HHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCC
Q 000051 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQ----GLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284 (2612)
Q Consensus 2209 ~~~~~~~~~l~g~~~p~~l~~ilp~l~~----~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~ 2284 (2612)
+ .+.......+...|-...+=+..|++ .+.+.++.+-..++.+.-.++-. .-+..|..||+|.+..
T Consensus 264 ~-~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-------~~~~~i~kaLvrLLrs-- 333 (968)
T KOG1060|consen 264 R-SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-------NQVTKIAKALVRLLRS-- 333 (968)
T ss_pred c-cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-------HHHHHHHHHHHHHHhc--
Confidence 0 00000001111222122333333433 33455666655555555544421 1356778899999876
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHH
Q 000051 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAG 2364 (2612)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~ 2364 (2612)
+..++...|..+..+..+-+..|.||+..+ .-+-+| ...++.-=...|..|+. ..++..+++++..-++++|..
T Consensus 334 ~~~vqyvvL~nIa~~s~~~~~lF~P~lKsF----fv~ssD-p~~vk~lKleiLs~La~-esni~~ILrE~q~YI~s~d~~ 407 (968)
T KOG1060|consen 334 NREVQYVVLQNIATISIKRPTLFEPHLKSF----FVRSSD-PTQVKILKLEILSNLAN-ESNISEILRELQTYIKSSDRS 407 (968)
T ss_pred CCcchhhhHHHHHHHHhcchhhhhhhhhce----EeecCC-HHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhcCchh
Confidence 678999999999999988888777765421 111222 23455555556666643 467889999999999988877
Q ss_pred HHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCC-CCc
Q 000051 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS-PSW 2443 (2612)
Q Consensus 2365 vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~-~~~ 2443 (2612)
+-..+++|++.+....+. ..+.+++-|..++++.++.|-..++-.|-.|....|..+ ..++.++...+.+ .-.
T Consensus 408 faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp 481 (968)
T KOG1060|consen 408 FAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVP 481 (968)
T ss_pred HHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhh
Confidence 777788888777655433 457788888888888899999999999999999888654 2233333221111 011
Q ss_pred hhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhh
Q 000051 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503 (2612)
Q Consensus 2444 ~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~ 2503 (2612)
..|.+.++.++..... .+...+++...+.+...++++.++-..+.-..++....
T Consensus 482 ~ARA~IiWLige~~e~------vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~ 535 (968)
T KOG1060|consen 482 AARAGIIWLIGEYCEI------VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTN 535 (968)
T ss_pred hhhceeeeeehhhhhh------cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEec
Confidence 1122222222222222 23455678888888888888888888887777776553
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.0024 Score=84.80 Aligned_cols=336 Identities=13% Similarity=0.125 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHhCCC--hhhhHh-hHHHHHHHhcCCCCHHHHHHHHHHHHHhhh-hcc-cccHHHHHHHHHhhcC-CCC
Q 000051 2052 FNAHALGALAEVAGPG--LNFHLG-TILPALLSAMGDDDMDVQSLAKEAAETVTL-VID-EEGVESLVSELLKGVG-DNQ 2125 (2612)
Q Consensus 2052 ~~~~al~~La~~~g~~--l~~~l~-~il~~Ll~~L~~~~~~vr~~a~~al~~l~~-~~~-~~~l~~ll~~Ll~~l~-~~~ 2125 (2612)
.+.+.+|+|++..-.. +...+. -+.+.++..+.++..-+|..+++.+..+.. .+. ...+.+.+....+.+. |.+
T Consensus 437 GAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 437 GALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc
Confidence 3567778887754321 222232 244555666778888899999999998873 332 3457778888888887 788
Q ss_pred hhHHHHHHHHHHHHHHhcc---cchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2126 ASIRRSSAYLIGYFYKNSK---LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~---~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
..||..|+.++..|..+.. ..++++++.+++.|+.+.++-+.+..... +..++..-+.+..|.-+... +
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v---me~iV~~fseElsPfA~eL~-q---- 588 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV---MEKIVCKFSEELSPFAVELC-Q---- 588 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHHhhchhHHHHH-H----
Confidence 9999999999999987655 45899999999999999987665554433 33333333333222211111 1
Q ss_pred hhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhc-----CCHHHHHHHH----HHHHHHHHhcCh-hhhhhchhhh
Q 000051 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-----GSAELREQAA----LGLGELIEVTSE-QSLKEFVIPI 2272 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~-----~~~~~r~~aa----~~L~~li~~~~~-~~l~p~v~~i 2272 (2612)
.+...|.+.+.+ .+.+.+.-+| .++..++..... ..+-.++.++
T Consensus 589 --------------------------~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~ 642 (1010)
T KOG1991|consen 589 --------------------------NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI 642 (1010)
T ss_pred --------------------------HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 112223333332 1122222222 223333333210 0122222333
Q ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC------
Q 000051 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR------ 2346 (2612)
Q Consensus 2273 ~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~------ 2346 (2612)
.-|.+..+-..+-.++-..++.....+.-.. ..+.|-.=++.+.+.+++.+..-+.-....-+|-++++++..
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~ 721 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLS-KEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP 721 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-cccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence 3333333222222233333333332222111 123343445667777888887666667777778877655321
Q ss_pred -hhHHHHHHHH-hhhcC--CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHh
Q 000051 2347 -VDPLVGDLLS-SLQVS--DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2347 -~~~~l~~Ll~-~l~~~--d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~ 2420 (2612)
.-..+-++++ .+.+. ...=+..+++-+..++..++..+ ..+++..+......+.. .+...|..+.+..-...-
T Consensus 722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~-dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinaly 800 (1010)
T KOG1991|consen 722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLL-DQYIPLFLELALSRLTREVETSELRVMLLEVVINALY 800 (1010)
T ss_pred hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcH-hhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 1122222222 23221 23345667888888888887743 56777777766665554 455677777666554443
Q ss_pred hCC
Q 000051 2421 CME 2423 (2612)
Q Consensus 2421 ~~~ 2423 (2612)
.-|
T Consensus 801 ynP 803 (1010)
T KOG1991|consen 801 YNP 803 (1010)
T ss_pred cCc
Confidence 344
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-05 Score=107.38 Aligned_cols=401 Identities=16% Similarity=0.180 Sum_probs=244.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHH
Q 000051 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVP 1502 (2612)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp 1502 (2612)
++.++.+.+.+.-+.++.+++.++....+.. ...+.+.+..+|.+++..+|..++..++.++.+........ =+++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 7888887777777888899999999887776 58888999999999999999999999999887644322211 257899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000051 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~ 1582 (2612)
.+..++.|++..|.+.|.++|..+++.- +..+.+++. ...+.|.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~----------------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDS----------------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCc----------------------------------chHHHHH
Confidence 9999999999999999999999998632 222222110 0123334
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-CCCc--hh
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG-EENF--PD 1657 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g-~~~~--~~ 1657 (2612)
..+...+..+|..+.+++..++.. + .+...+.. .+++.+...+.+++.-+|..+...++.++..-. -+++ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777777777777663 2 23333433 388888888888899999999999999987211 0111 23
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHh
Q 000051 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2612)
Q Consensus 1658 ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~ 1737 (2612)
+++.+.+.+.+..... |.... .=.+.+..++.++..-+..+....+.
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~--------------------------------~l~g~~~f~g~la~~~~~~v~~~~p~ 290 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSL--------------------------------LLPGRMKFFGNLARVSPQEVLELYPA 290 (503)
T ss_pred HHHHHHHHHhccccCC-cccch--------------------------------hhhhHHHHHHHHHhcChHHHHHHHHH
Confidence 4444444443222111 11110 11233455566665534444444466
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-hh--------chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcC
Q 000051 1738 VLPAILDGLADENESVRDAALGAGHVLVEHY-AT--------TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2612)
Q Consensus 1738 iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-~~--------~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~ 1808 (2612)
++..+...+...+...+..|+++++.+.... |. ...+.++..+-.......-.+|..++..++.++..-
T Consensus 291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~-- 368 (503)
T PF10508_consen 291 FLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG-- 368 (503)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC--
Confidence 7777777777888889999999988775321 11 122334444444444555568888999999887421
Q ss_pred CcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH--HHH
Q 000051 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVL 1886 (2612)
Q Consensus 1809 ~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l--~~l 1886 (2612)
.+..+..........-+.++.+.... .+......+-+++|.++.++|..++.+ |+..+.+. |.+
T Consensus 369 ----------~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gf 434 (503)
T PF10508_consen 369 ----------TDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQREICSSPGF 434 (503)
T ss_pred ----------CCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHhCccH
Confidence 11011111112223334444433222 233345667789999999999999874 55554432 334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1887 MNTLISSLASSSSERRQVAGRALGELV 1913 (2612)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv 1913 (2612)
+..++.+-.+++.+.+.+=..++..++
T Consensus 435 ie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 435 IEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00014 Score=92.22 Aligned_cols=238 Identities=13% Similarity=0.176 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
...++-+-++..++...+.||+.|...+-.++-.++ +.++..+|.|.+.|++++..+..+|+..+..+|...|+..
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--- 216 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--- 216 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc---
Confidence 345788889999999999999999888877766654 4678899999999999999999999999999999888743
Q ss_pred hchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcC-ChhH-hhHHHHHHhhcCCCChh--HHHHHHHHHhcccccc--C
Q 000051 1497 LPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNT--V 1569 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~-~~~i-~~ivp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~--i 1569 (2612)
-.+-|.++++|.++ |..| -++.|.-|+...+ .|.+ ..++|.+.+.+...... +=+|+++++....... .
T Consensus 217 -L~LAP~ffkllttSsNNWm---LIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 217 -LQLAPLFYKLLVTSSNNWV---LIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred -ccccHHHHHHHhccCCCee---hHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 34567777777654 3222 2334444444322 3444 66777777776544322 1278888776433322 3
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1570 ~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
...+....+..|...+.|.+++.|.-++-+++.++. +.|+.+..+. ..+.++|.|.++.+|-.|...+-.++.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs- 365 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS- 365 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-
Confidence 345667788888888999999999999999999988 4555555544 455678899999999999888877765
Q ss_pred hCCCCchhhHHHHHHHhccCCC
Q 000051 1650 MGEENFPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1650 ~g~~~~~~ll~~L~~~L~~~~~ 1671 (2612)
++.+.+++..||..+...++
T Consensus 366 --kkNl~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 366 --KKNLMEIVKTLMKHVEKAEG 385 (877)
T ss_pred --hhhHHHHHHHHHHHHHhccc
Confidence 45677888888877655443
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-05 Score=99.24 Aligned_cols=178 Identities=16% Similarity=0.072 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHh-HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhc
Q 000051 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 2323 (2612)
Q Consensus 2245 ~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~-vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~ 2323 (2612)
.|+.|-.+|..+++..| ..+...++.+...|...+.+..+.+ .-...++.+..+...++..++| +-++.+.+..++.
T Consensus 749 errgael~L~~l~~~fg-~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFG-GSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhh-HHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 47778888999999888 5555555666555555555432222 3445566666666667777777 6677788888999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc--CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhc
Q 000051 2324 DSTRTVRSSAALALGKLSALS--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2612)
Q Consensus 2324 d~~~~vR~~Aa~aLg~L~~~~--~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2612)
..+..+|.+|++|+|.+.... ......+..++..+.+.+.-+|.....-+.+++...+.....+|..-++..|...++
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 999999999999999995432 223445666666666555444444333344444444444446889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2402 HDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
|..+.+|.++.+++..+....|-
T Consensus 907 d~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999876553
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.5e-08 Score=109.13 Aligned_cols=308 Identities=17% Similarity=0.162 Sum_probs=203.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
.++.+.+.|.+....-....|+++|..++++... +.+.....+|.+.+++.+. +..+|+.++.++|.++... ..+.
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS-~~~R 192 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDS-EGCR 192 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCc-hhHH
Confidence 4556666664333335567999999999987653 2222336678888888877 6889999999999987322 2355
Q ss_pred hhHH--HHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHhhcHH---hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh
Q 000051 1416 PYVI--QMLPLLLVAFSDQV---VAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1416 ~~v~--~ilp~ll~~l~D~~---~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~ 1487 (2612)
.|+- ..+..++..+.... ..+|.++|.....+-..-++- .+.+.+|.|.+.+.+.+..+-..||+++..+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 6665 35666666665443 356777776665554443332 458889999999988888889999999999887
Q ss_pred hCchhhhhhhc-hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC--hhH--hhHHHHHHhhcCCCChhHH-HHHHHHH
Q 000051 1488 CAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2612)
Q Consensus 1488 ~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~ivp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2612)
+..+-+...+. .+.+.|+++|.+++..|+.-|.+++|++...-.. ..+ -..++.+...++.|.+.+| +++.++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 76555444443 4567899999999999999999999998764321 111 3466777777888888887 6777765
Q ss_pred hcccc--ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH--hhhHHHHHHHhcCCCHHHHH
Q 000051 1562 QTTFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRS 1637 (2612)
Q Consensus 1562 ~~~~~--~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d~~~~VR~ 1637 (2612)
..+.- ..+.+-.-..++|.|...+..-+..+|+.||.++.+.........+...|+ ..++..|..+|.-.+..+-+
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 53221 112222235678889999888888999999999999765422223434443 23444444444433333444
Q ss_pred HHHHHHHHHH
Q 000051 1638 VAARAIGSLI 1647 (2612)
Q Consensus 1638 ~A~~aL~~L~ 1647 (2612)
.+..|+..+.
T Consensus 433 v~LD~~eniL 442 (526)
T COG5064 433 VALDAIENIL 442 (526)
T ss_pred hhHHHHHHHH
Confidence 4444444433
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=112.99 Aligned_cols=200 Identities=23% Similarity=0.318 Sum_probs=141.1
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHcc
Q 000051 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2612)
Q Consensus 1775 ~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~ 1854 (2612)
.+.+.+.....+.+|..|..+++-+..++..- . ..+ ....+.+. ...++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~-----------~~~-----~~~~~~~~-----l~~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--A-----------PED-----FPPDFVEC-----LRQLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHH-----HH---HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--C-----------ccc-----cHHHHHHH-----HHHhHHHHHHHHh
Confidence 34455555557889999999999998887541 0 000 00112221 1234456666778
Q ss_pred CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhH-HHHHhhhcC
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~l-lp~L~~~L~ 1933 (2612)
|....|-..|+.+++.++...+..+.++++.++|.+++.+++++..+|..|..+|..++..++ ..+.+ .+.+..+..
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999999999999999999999999998876 22344 777788889
Q ss_pred CCChhHHHHHHHHHHHHHHhhC--hhhHHH--hHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~--~~~l~~--~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
++++.+|..++.++..++...+ ...+.. .++.+++.+.+.+.|++++||++|..+|..+.+.+|..
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 9999999999999999988877 333332 35889999999999999999999999999998887764
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-07 Score=111.10 Aligned_cols=183 Identities=26% Similarity=0.328 Sum_probs=132.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHH-------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000051 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA-------TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2612)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~-------~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~ 1419 (2612)
..+.+|..|..|...|..++.+...... ...+++ .+...+.+. ...+-..|+.++..++..++..|.+|+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4556899999999999999987621111 112333 333444444 4556678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc---hhhhh-
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ- 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p---~~l~~- 1495 (2612)
.++|.++..++|++..+|++|..++..++...+ ..-+.+++.+...+.++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999999999998876 1112236777778899999999999999999887666 44433
Q ss_pred -hhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1496 -CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1496 -~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
.++.+++.+.+++.|++++||.+|-.++..+.+.+++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999887753
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.2e-06 Score=109.18 Aligned_cols=352 Identities=22% Similarity=0.244 Sum_probs=233.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch-H
Q 000051 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-P 2312 (2612)
Q Consensus 2234 l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-p 2312 (2612)
+...+.+.+.+.-..++.+|..+.+...+..+ .+++.+.|.+.+... ++.||..++..++.+.+.-........ +
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 66777777777777888889998887665544 455556677888764 789999999999888764332222111 4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHH-----HHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChH
Q 000051 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387 (2612)
Q Consensus 2313 qL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~-----l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~ 2387 (2612)
.+.+.++.++.|++..|...|+.+|..+....+..+.+ +..|...+..++..+|..+++.+..+........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 67888999999999999999999999998766555555 6667777766677888888888877765432222 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh-H------HHHHHHHHHhhcCCCC-ch--hhHHHHHHHHH
Q 000051 2388 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG-Q------LADLLQELLNLASSPS-WA--ARHGSVLVFAT 2455 (2612)
Q Consensus 2388 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~-~------~~~~l~~ll~~~~~~~-~~--~~~~~~~~l~~ 2455 (2612)
+.. .+++.+...++++|.-++.++.++++.|+. .+.. . +.+.+-.++.....+. .. .--+.....+.
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 222 377888888888788899999999999998 3322 1 1122222222222222 11 01122223344
Q ss_pred HHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccC---CCCchhhHHHHHHHHhhcCCCCHHH
Q 000051 2456 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSEV 2532 (2612)
Q Consensus 2456 ~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~---~~~~~~l~~~l~~~~~~l~~~~~~v 2532 (2612)
+....|..+. ...+.++..+.+...+.++..+..|+.++|.+-.....+. ..........+..+.........|+
T Consensus 276 la~~~~~~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 276 LARVSPQEVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred HHhcChHHHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHH
Confidence 4444555554 3456788888988899999999999999998754432110 0011234556777777778889999
Q ss_pred HHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhh-------------cCCcchhhhhHHHHHHHHhcccccchhh
Q 000051 2533 RRRALSALKSVAKANPSAIMVHVALFGPALAECL-------------KDGSTPVRLAAERCAVHAFQLTRGIIYS 2594 (2612)
Q Consensus 2533 r~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~-------------~~~~~~vk~aae~~~~~~~~~~~~~~~~ 2594 (2612)
|..++.++..+-...++.-.+.+..+...+|+.. +-+=.-+|.|+.+-+-+++.=+-+...+
T Consensus 354 k~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i 428 (503)
T PF10508_consen 354 KLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREI 428 (503)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999977665422223334555555553 3333448999998888887665544443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.0059 Score=80.44 Aligned_cols=212 Identities=18% Similarity=0.187 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-------cCC-----------hh
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-------STR-----------VD 2348 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-------~~~-----------~~ 2348 (2612)
+....++..+.-+....=..-.|-...+-..|+.+|+++ ++-..|++++.-++.= .++ +.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 345555555544333211111122334555566666663 3445666666666321 011 33
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC---Chh
Q 000051 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM---EDG 2425 (2612)
Q Consensus 2349 ~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~---~~~ 2425 (2612)
.++|.|++.+.+.+...|...+.+|..|+.+.+....-+..+.++++|.+.++-+|..+|....+++..+.... -.+
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 46788888888777888999999999999988876656788999999999999889999999999988876543 335
Q ss_pred HHHHHHHHHHhhcCCCC---chhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000051 2426 QLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2612)
Q Consensus 2426 ~~~~~l~~ll~~~~~~~---~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2612)
++..+++.++....+++ ..+|..+..+|+.+.+.-|...+ ..+.++++..+.+.+.|.+.-+|+-|+.+-+.+-.
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l-~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL-LSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc-ccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 68888888876555555 45787788888888887776654 46889999999999999999999999998877543
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00012 Score=93.51 Aligned_cols=479 Identities=16% Similarity=0.140 Sum_probs=287.1
Q ss_pred CHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCC
Q 000051 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH 1512 (2612)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~ 1512 (2612)
+...++|.-..+..|+. ...+..++|..++...+++..+|+-.---|-..|+..|+.--- . +..+-+.|.|+|
T Consensus 49 d~~KleAmKRIia~iA~---G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---S-IntfQk~L~DpN 121 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAK---GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---S-INTFQKALKDPN 121 (968)
T ss_pred cHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---e-HHHHHhhhcCCc
Confidence 34566666666655544 3457889999999999999999988777777777765553111 1 345667899999
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHhh-HHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCH
Q 000051 1513 PKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSA 1590 (2612)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~~~~~~i~~-ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~ 1590 (2612)
+.+|..|.++|..+-- |-+.+ ++-.+.++..|+..++|. |..++.+ .+..+......+...+...|.|+++
T Consensus 122 ~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpK---LYsLd~e~k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 122 QLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPK---LYSLDPEQKDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHH---HhcCChhhHHHHHHHHHHHhcCCCC
Confidence 9999999998876632 22322 233455677899999983 4444443 2344555556888899999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-C-C---------C------
Q 000051 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-G-E---------E------ 1653 (2612)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~-g-~---------~------ 1653 (2612)
.|-..|.-+...+|.. .-+-+.+++..+ .+.+.|-+.-=+-..+..|..-++.- . + .
T Consensus 195 lVvgsAv~AF~evCPe--rldLIHknyrkl----C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVCPE--RLDLIHKNYRKL----CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNL 268 (968)
T ss_pred cchhHHHHHHHHhchh--HHHHhhHHHHHH----HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccc
Confidence 9988888888777642 111222333222 22232322222333344443333310 0 0 0
Q ss_pred ----------C-----chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHH
Q 000051 1654 ----------N-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1654 ----------~-----~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
+ ..-++......+.+.... +...+++..-.++. ......+...+++.+. .+..+|...++
T Consensus 269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s-VVmA~aql~y~lAP---~~~~~~i~kaLvrLLr-s~~~vqyvvL~ 343 (968)
T KOG1060|consen 269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS-VVMAVAQLFYHLAP---KNQVTKIAKALVRLLR-SNREVQYVVLQ 343 (968)
T ss_pred cccccccCCCcccCccHHHHHHhccHHHhcCCcH-HHHHHHhHHHhhCC---HHHHHHHHHHHHHHHh-cCCcchhhhHH
Confidence 0 011122222223333322 33333433322222 1233445555666443 45678888889
Q ss_pred HHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000051 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~l 1798 (2612)
.+..++..-+.-|.||+..+.- .-.|+ ..+..-=++.+.. ......+..+++++...+.+.+.++...+++.
T Consensus 344 nIa~~s~~~~~lF~P~lKsFfv----~ssDp-~~vk~lKleiLs~---La~esni~~ILrE~q~YI~s~d~~faa~aV~A 415 (968)
T KOG1060|consen 344 NIATISIKRPTLFEPHLKSFFV----RSSDP-TQVKILKLEILSN---LANESNISEILRELQTYIKSSDRSFAAAAVKA 415 (968)
T ss_pred HHHHHHhcchhhhhhhhhceEe----ecCCH-HHHHHHHHHHHHH---HhhhccHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 9999988888889999765321 11121 1122111222222 22334577799999988888777777888888
Q ss_pred HHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhh
Q 000051 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2612)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2612)
+|.....+. ...+.++..|...++..+..|-..|+.+++.+....|..
T Consensus 416 iGrCA~~~~--------------------------------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 416 IGRCASRIG--------------------------------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred HHHHHHhhC--------------------------------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 887643321 112345555555566667889999999999999988865
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh
Q 000051 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2612)
Q Consensus 1879 l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2612)
-.+++..+...+-. -.-+.-|....+.+|+.+.. -+.+.|.++..+.+.+.++.+.+|..++..-..+..... ++
T Consensus 464 h~~ii~~La~lldt---i~vp~ARA~IiWLige~~e~-vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~-~~ 538 (968)
T KOG1060|consen 464 HLEILFQLARLLDT---ILVPAARAGIIWLIGEYCEI-VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNI-DQ 538 (968)
T ss_pred HHHHHHHHHHHhhh---hhhhhhhceeeeeehhhhhh-cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEech-hh
Confidence 55555554444311 12345566777778887766 345678888888888999999999887766555433221 11
Q ss_pred HHHhHhHHHHHHHHHh-cCCcHHHHHHH
Q 000051 1959 LLSFMDELIPTIRTAL-CDSILEVRESA 1985 (2612)
Q Consensus 1959 l~~~l~~ll~~l~~~L-~D~d~~Vr~~A 1985 (2612)
...++..+...- -|.+.++|+.+
T Consensus 539 ----~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 539 ----TKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred ----HHHHHHHHHHHhccCCCcchhHHH
Confidence 345555555544 37778888776
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00018 Score=92.87 Aligned_cols=338 Identities=16% Similarity=0.202 Sum_probs=190.4
Q ss_pred cCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000051 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2612)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~ 1427 (2612)
.+++...+|.+..+...+.... .+++-.+...++++-+...+-...+|+..++..++. ...+.+.|.+-.
T Consensus 80 as~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---EmardlapeVe~ 149 (866)
T KOG1062|consen 80 ASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMARDLAPEVER 149 (866)
T ss_pred cCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhHHhhHHHHH
Confidence 3445556666555555555331 233333444443321111122233344444444443 234577888888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhh
Q 000051 1428 AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507 (2612)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~ 1507 (2612)
.++..++.||+.|..|+-.+....+ +.+..+++...+.|.+++..+-.+++.++..|+...|+.+. ++.+++|.++..
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~i 227 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKI 227 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHH
Confidence 8888999999998887776655433 34566666666677777766666667776666665543322 233333333222
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000051 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
|+ ++...-- .|. --++.+.+|.++.-+=.+.+.+..
T Consensus 228 Lk---------------~l~~~~y----------------spe-------------ydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 228 LK---------------QLTNSGY----------------SPE-------------YDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HH---------------HHhcCCC----------------CCc-------------cCccCCCchHHHHHHHHHHHHhcC
Confidence 21 1111000 000 012344455555444445555655
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCch-hhHHHHHHH
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFP-DLVSWLLDA 1665 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~~g~~~~~-~ll~~L~~~ 1665 (2612)
.+.+....-.++++.++......+.... ..+.+.+...+. .+++..|..|+.+||.+...-... .. --+..|+..
T Consensus 264 ~d~daSd~M~DiLaqvatntdsskN~Gn--AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~N-irYvaLn~L~r~ 340 (866)
T KOG1062|consen 264 NDADASDLMNDILAQVATNTDSSKNAGN--AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNN-IRYVALNMLLRV 340 (866)
T ss_pred CCccHHHHHHHHHHHHHhcccccccchh--HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccc-eeeeehhhHHhh
Confidence 5566666667777777765322222111 113333333333 467889999999999987643222 11 113445555
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhh
Q 000051 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2612)
Q Consensus 1666 L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~ 1745 (2612)
++.+.....|.. ..++.+++++++.+|.-++.+.-.+... ..+..++..++.+
T Consensus 341 V~~d~~avqrHr---------------------~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~mv~eLl~f 393 (866)
T KOG1062|consen 341 VQQDPTAVQRHR---------------------STILECLKDPDVSIKRRALELSYALVNE------SNVRVMVKELLEF 393 (866)
T ss_pred hcCCcHHHHHHH---------------------HHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHH
Confidence 555554433332 3577788999999999999888777652 4567788888888
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhc
Q 000051 1746 LADENESVRDAALGAGHVLVEHYATT 1771 (2612)
Q Consensus 1746 L~d~~~~VR~~Al~al~~lv~~~~~~ 1771 (2612)
|...+++.+......+..+++.|+++
T Consensus 394 L~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 394 LESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 88778888877776666666666553
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.014 Score=82.34 Aligned_cols=463 Identities=18% Similarity=0.173 Sum_probs=259.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHh
Q 000051 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2612)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2612)
...++..+..+++..|..+.++++.++...+.. +...+...+...+.+ .++..|.+-..++|.+....|+-.-.+++.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 344556667788899999999999999888776 455555655555554 678889999999999988777666667888
Q ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhh---hhhhHHHHHHhccCCCcc-hHHHHHHHHHhhhcccccccc
Q 000051 1965 ELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPH 2039 (2612)
Q Consensus 1965 ~ll~~l~~~L~D~d-~~Vr~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~al~~L~~il~~~~~~vlp~ 2039 (2612)
+-+..+.....|+. |.|+..+..++..+....|+.. ++..+-.++..|-+..+. ..-..++ ++.+.+
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~-------~R~~~~- 1029 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCY-------NRCFNG- 1029 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhh-------cccccc-
Confidence 88888888888885 5999999999988887766532 233333344444332221 0000111 010100
Q ss_pred cchhhccCCcchhHHHHHHHHHHHhCCChhhhHh---------hHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-cc
Q 000051 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG---------TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EG 2109 (2612)
Q Consensus 2040 Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~---------~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~ 2109 (2612)
-...+.+..+.|+.+.+... ..+-...=.+..+++.++..++.|+.++-..... -+
T Consensus 1030 --------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n 1095 (2067)
T KOG1822|consen 1030 --------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN 1095 (2067)
T ss_pred --------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc
Confidence 01223344444443333221 1111111123456778888888998887654332 45
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH-----------------H---HHHHHHHHHhc-CCChh
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA-----------------P---NMISTLIVLLS-DSDST 2168 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~-----------------~---~il~~L~~ll~-d~d~~ 2168 (2612)
...+++.+...+.....-.|.+++.++..+..+.......|. . .+=..++.+++ ..|..
T Consensus 1096 ~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~ 1175 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNK 1175 (2067)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHH
Confidence 788999999988877777777777777666543221111111 0 11123344444 45667
Q ss_pred HHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCC------CcCchhhHHHHH------H
Q 000051 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL------PKALQPLLPIFL------Q 2236 (2612)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~------p~~l~~ilp~l~------~ 2236 (2612)
.+......|.++......+.+...+....+.+....+- .....+.|... ..+-...++.-. +
T Consensus 1176 l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~------s~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~ 1249 (2067)
T KOG1822|consen 1176 LLKNILETLSRMLNSLADELLSSWLMLLKDLLQAAEDF------SASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSK 1249 (2067)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhc------cccccccccccccchhhcccchhhHHhhhccccccC
Confidence 77778888888665554444433333333333311110 00001111110 011111222111 1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhh-------------------hhHHHHHHh---cCCCCHhHHHHHHH
Q 000051 2237 GLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-------------------ITGPLIRII---GDRFPWQVKSAILS 2294 (2612)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~-------------------i~~pLi~~l---~~~~~~~vk~~al~ 2294 (2612)
++.++-+..|.-++.|+..++.... ....|.+- -..-|+|+. +-..+...|..-++
T Consensus 1250 p~~qprW~Trvfaa~cv~r~i~~c~--a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~ 1327 (2067)
T KOG1822|consen 1250 PLVQPRWPTRVFAAECVLRIINVCE--AVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLE 1327 (2067)
T ss_pred CccccccchHHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHH
Confidence 1223346667778888886665443 22222211 111234431 12236778999999
Q ss_pred HHHHHHHhcCCCcc----------CchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcc-----CChhHHHHHHHHhh
Q 000051 2295 TLSIIIRKGGIALK----------PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS-----TRVDPLVGDLLSSL 2358 (2612)
Q Consensus 2295 ~L~~L~~~~~~~l~----------p~lpqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~-----~~~~~~l~~Ll~~l 2358 (2612)
.|..+....-..-. +|.+|+...+..++.|. +++|-..|.+.....+..+ ..+..+..-|+..+
T Consensus 1328 ~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl 1407 (2067)
T KOG1822|consen 1328 SLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSL 1407 (2067)
T ss_pred HHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhh
Confidence 99998876533322 34455666666667665 8999999888887775432 22334444555555
Q ss_pred hcCC---------------HHHHHHHHHHHHHHHHh
Q 000051 2359 QVSD---------------AGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2359 ~~~d---------------~~vr~~~l~AL~~vi~~ 2379 (2612)
+... .-.+-++++|+.|+...
T Consensus 1408 ~k~~~g~~~s~~ly~esa~tme~LaiLkAWAEvyv~ 1443 (2067)
T KOG1822|consen 1408 DKSQSGKIISSQLYNESASTMEKLAILKAWAEVYVV 1443 (2067)
T ss_pred cccCccccccceeecchHHHHHHHHHHHHHHHHHHH
Confidence 4321 12356789999998754
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00067 Score=91.02 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCCh-hHHHHH
Q 000051 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSS 2132 (2612)
Q Consensus 2054 ~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~-~vR~~A 2132 (2612)
...+.+++-.+|..+.+ +-+.+|.++..+...+..+|..++.|++.+......+....++..++..+++.+. ..|+.+
T Consensus 797 ~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a 875 (1549)
T KOG0392|consen 797 FEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGA 875 (1549)
T ss_pred HHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhH
Confidence 34555666666777777 7788899999999999999999999999998876666677778888888877544 455566
Q ss_pred HHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2133 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2133 ~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
...++.+.......+.+|.+-++..|+..++|..+.||.++-.++..++...+-
T Consensus 876 ~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 876 DELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred HHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 677777788777888899999999999999999999999999999999887653
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-05 Score=99.45 Aligned_cols=385 Identities=17% Similarity=0.214 Sum_probs=231.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHH
Q 000051 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2612)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~i 2154 (2612)
+.+.+.+-|+..+.-+...|+.+++.++ +.+-.+.+.|++.+.+++.++.+|.-|+.|...+....+.-. ..+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHh
Confidence 4455556677777777777777777664 457778899999999999999999999999998887765333 344
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc------cccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCch
Q 000051 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2612)
Q Consensus 2155 l~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~------~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~ 2228 (2612)
+.....++.+.+..|..++..-+..+++..+. +..+.++..+++.....- .....+.|.+ .
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y--------speydv~gi~-----d 247 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY--------SPEYDVHGIS-----D 247 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCccCccCCC-----c
Confidence 55566677788888888888777888776442 234444444444332110 1112344433 3
Q ss_pred hhHHH----HHHHHhcCCHHHHHHHHHHHHHHHHhcChh------hhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHH
Q 000051 2229 PLLPI----FLQGLISGSAELREQAALGLGELIEVTSEQ------SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2612)
Q Consensus 2229 ~ilp~----l~~~L~~~~~~~r~~aa~~L~~li~~~~~~------~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~ 2298 (2612)
|++.+ ++..+..++++..+.....|+.++.++... -+-.-|..| +.=+.+...|..|..+||.
T Consensus 248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI-------~~I~~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI-------MDIRSNSGLRVLAINILGK 320 (866)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH-------HhccCCchHHHHHHHHHHH
Confidence 44443 334556677776677777777777665321 111111111 1112244566666666665
Q ss_pred HHHhcCCCcc---------------CchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCH
Q 000051 2299 IIRKGGIALK---------------PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363 (2612)
Q Consensus 2299 L~~~~~~~l~---------------p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~ 2363 (2612)
++..-...++ .-+.+-+.+++.||.|++..+|.+|..-+-.|+. ..++..++.+|+.-+...|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDE 399 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccH
Confidence 5432222111 1234567789999999999999999987777644 56888999999998877776
Q ss_pred HHHHHHHHHHH------------------HHHHhcCCCcChHHHHHHHHHHHHhhcCC---------------------C
Q 000051 2364 GIREAILTALK------------------GVLKHAGKSVSSAVKIRVYSVLKDLVYHD---------------------D 2404 (2612)
Q Consensus 2364 ~vr~~~l~AL~------------------~vi~~~g~~~~~~~~~~i~~~L~~~l~~~---------------------~ 2404 (2612)
..|.....-+. .|+..+|+-+.......++.++-+.+.+. +
T Consensus 400 ~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~ 479 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQ 479 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhh
Confidence 66655544444 44555566555555566666555542221 2
Q ss_pred HHHHHHHHHHHHHHHhh------------CChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2405 DHVRVSAASILGIMSQC------------MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~------------~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
+..-..+.=|||.-+.. ..+.++...+.+++....+. ...+..+..++..+....+.. .++
T Consensus 480 e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~------~~r 552 (866)
T KOG1062|consen 480 EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS------SER 552 (866)
T ss_pred hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc------HHH
Confidence 22334455677765521 12234666677766554433 444544444554443333222 456
Q ss_pred HHHHHHhhhccCChhHHHhHHH
Q 000051 2473 ILDRLKSSLKDEKFPLREASTK 2494 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~ 2494 (2612)
+-..|.+...+-+..++..|+.
T Consensus 553 i~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 553 IKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHhcccccHHHHHHHHH
Confidence 6666666667777778777765
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.014 Score=80.70 Aligned_cols=154 Identities=17% Similarity=0.230 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhhhcCCChh
Q 000051 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWR 1473 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~ 1473 (2612)
.+..+..++-.++...+ |..-+...+..++..++.+...+|..|..|+..+++.=+.- ..+.+...+...+.+....
T Consensus 793 d~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred cchhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 34455555555554332 33333444555667788999999999999999987643322 2255666667788899999
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-hhHhhHHHHHHhhcCCCChh
Q 000051 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDH 1552 (2612)
Q Consensus 1474 ~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ivp~Ll~~l~d~~~~ 1552 (2612)
+|.+|++++|.+.-+.|+...+++..|.. -..|+...||+.+.+-+..++...++ +.+..++-.++....|....
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~~i~e----rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYDQIIE----RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHh----hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 99999999999988888877666666554 56789999999999999999876433 12344444555555666554
Q ss_pred HH
Q 000051 1553 TK 1554 (2612)
Q Consensus 1553 ~r 1554 (2612)
+.
T Consensus 947 I~ 948 (1692)
T KOG1020|consen 947 IK 948 (1692)
T ss_pred HH
Confidence 43
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.012 Score=81.38 Aligned_cols=260 Identities=17% Similarity=0.193 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cC---ChhHHHHHHHHh---hh
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-ST---RVDPLVGDLLSS---LQ 2359 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-~~---~~~~~l~~Ll~~---l~ 2359 (2612)
.+...++..+...+-.++..-..|+..|-..+.+.+-..+-..-..|..|+|.++.- .. .+...+...... ++
T Consensus 1095 ~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k 1174 (1692)
T KOG1020|consen 1095 QFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIK 1174 (1692)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444444457777888888877766667777888999999652 11 122233333332 22
Q ss_pred cC---C--H---HHHHHHHHHHHHHHHhc--------CCC---cChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2360 VS---D--A---GIREAILTALKGVLKHA--------GKS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2360 ~~---d--~---~vr~~~l~AL~~vi~~~--------g~~---~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
.+ + . ..-...+..++-++.+. |.. ..+...+.++.+|.-..++.+.++|..|...+|.++.
T Consensus 1175 ~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci 1254 (1692)
T KOG1020|consen 1175 SSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICI 1254 (1692)
T ss_pred hccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 22 1 0 11122334444444432 111 1235667888888878888889999999999999997
Q ss_pred hCChh----HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH---------------------------hhCCccccC---
Q 000051 2421 CMEDG----QLADLLQELLNLASSPSWAARHGSVLVFATFL---------------------------RHNPSAISM--- 2466 (2612)
Q Consensus 2421 ~~~~~----~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l---------------------------~~~p~~~~~--- 2466 (2612)
..|.- ++..++.++++....+. ..+.-+...+...+ ..+. ....
T Consensus 1255 ~hp~l~~~~~v~nly~~ila~~n~~~-~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~s-g~~s~~~ 1332 (1692)
T KOG1020|consen 1255 QHPSLFTSREVLNLYDEILADDNSDI-KSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSS-GMGSSDG 1332 (1692)
T ss_pred hCchhhhhHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhccccc-ccccccc
Confidence 76642 33344444443211111 11111111111111 0000 0000
Q ss_pred -CchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000051 2467 -SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2467 -~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
.+....+++.+.+.+-+.+..+|..|+..+.-+|..+. . .+...++.++..-.|.....|..|...+.-+-+
T Consensus 1333 ~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL-V------hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1333 VSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL-V------HPVHCVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC-C------CccchhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence 11334455566666677888999999998877776543 2 246788888888889999999999999999888
Q ss_pred hCchhhhhhH
Q 000051 2546 ANPSAIMVHV 2555 (2612)
Q Consensus 2546 ~~~~~v~~~l 2555 (2612)
+.+..|...+
T Consensus 1406 kY~gfv~sk~ 1415 (1692)
T KOG1020|consen 1406 KYEGFVFSKL 1415 (1692)
T ss_pred hhHHHHHHHH
Confidence 8777765433
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.02 Score=85.56 Aligned_cols=459 Identities=20% Similarity=0.251 Sum_probs=215.5
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhchh
Q 000051 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----SSSSERRQVAGRALGELVRKLGER 1919 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~----~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2612)
..+..++..+.|....++.++...++.++...|..+-+.+.. ..+..++ +...........-+..++......
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~---~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK---TLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH---HHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 455556777899999999999999999988778544444433 3333333 222222233333333333322222
Q ss_pred hhhhHHH---HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Q 000051 1920 VLPSIIP---ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1920 ~l~~llp---~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~-d~~Vr~~A~~al~~l~~~ 1995 (2612)
+.+.+-| .+...+.+++..+-..+...+++++.. ++..+..+.+.+++.+.+.+.|. +..-|.++..+++.+...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v-~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAV-GGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHh-ccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 2333323 333345566666667777888888664 44555556667777777777765 445567778888888766
Q ss_pred hChhhhhhh--HHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHh
Q 000051 1996 AGMQAIDEI--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073 (2612)
Q Consensus 1996 ~g~~~~~~i--lp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~ 2073 (2612)
.|.. +.++ .|.+++.|.+ ++...-++..+..++..+. .+|. +.||..
T Consensus 721 ~~~~-v~p~~~~P~ll~~l~~----------------------------~~~te~~~~ir~~~v~~~g-~~g~-~d~~~~ 769 (2341)
T KOG0891|consen 721 TGYV-VDPYLDYPELLDILIN----------------------------ILKTEQSSTIRREAIRLLG-LLGA-LDPYKH 769 (2341)
T ss_pred cceE-ecccccChHHHHHHHH----------------------------HHhHhhhhHHHHHHHHHhh-hhcc-cchhHH
Confidence 5541 1111 2222222211 0000000111111222221 1121 122222
Q ss_pred hHHHHH--HHhcCC-CCH-HHHH-HHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHH-HHHHHHHHHHHhcccch
Q 000051 2074 TILPAL--LSAMGD-DDM-DVQS-LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYL 2147 (2612)
Q Consensus 2074 ~il~~L--l~~L~~-~~~-~vr~-~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~-~A~~~L~~l~~~~~~~~ 2147 (2612)
...... .+.... ... ..+. ........+ ++-....-+..++..+++....... ..+.+.-.++...+.+.
T Consensus 770 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~----~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~ 845 (2341)
T KOG0891|consen 770 KVTEGTSASKISSEQIKSDIDISLLESGVNPSN----DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKC 845 (2341)
T ss_pred HHHhhhhhHhhhhccccccchHHHHHhhhhhhh----hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccch
Confidence 211111 111110 000 0110 000000000 1111111222444555554333222 33444555566666677
Q ss_pred hccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2148 ~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
..+.+.+++.++..........+.....-+.... +-.+.++
T Consensus 846 ~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~---------------------------------------~~~~~h~ 886 (2341)
T KOG0891|consen 846 VLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLV---------------------------------------AIVRQHI 886 (2341)
T ss_pred hhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhh---------------------------------------hccchhH
Confidence 7777887777776554222111111110000000 0001112
Q ss_pred hhhHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcC
Q 000051 2228 QPLLPIFLQGLISG---SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~---~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~ 2304 (2612)
.+.++.....+... +-+........+.++....+ ..++.|++....-.+... .......+......+..+ ...|
T Consensus 887 ~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~-~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~-~~~~ 963 (2341)
T KOG0891|consen 887 RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALG-GEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSL-QKFG 963 (2341)
T ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-hHHHHhhhhhccchheee-cccccchHHHHHHhhHHH-HhcC
Confidence 22222222222111 12222233344445555554 567777766654444444 222222333222222222 2234
Q ss_pred CCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhc---cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHh
Q 000051 2305 IALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2305 ~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~~---~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2612)
.....+..-+.+..++.+.++ ...+|..+..+.+.+... ..........++..+..+ .+++..++..+..++..
T Consensus 964 ~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~ 1042 (2341)
T KOG0891|consen 964 SNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQ 1042 (2341)
T ss_pred ccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHh
Confidence 445556666778888888887 788999999999988431 111122233345555555 77888888888888887
Q ss_pred cCCCc
Q 000051 2380 AGKSV 2384 (2612)
Q Consensus 2380 ~g~~~ 2384 (2612)
.|...
T Consensus 1043 ~~~~~ 1047 (2341)
T KOG0891|consen 1043 LGKDF 1047 (2341)
T ss_pred hcCce
Confidence 77654
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.011 Score=77.93 Aligned_cols=194 Identities=22% Similarity=0.256 Sum_probs=145.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc-------------hhccHHHHHHHHHHHhcCCChhHHHHHHHH
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-------------LVDEAPNMISTLIVLLSDSDSTTVAAAWEA 2176 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~-------------~~~~~~~il~~L~~ll~d~d~~V~~~a~~a 2176 (2612)
..++-..++..+++ +.+-..++.++..+....+.. -..++.++++.+...+......++..-..+
T Consensus 813 s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~ 890 (1030)
T KOG1967|consen 813 SSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEA 890 (1030)
T ss_pred cchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHH
Confidence 34555666666665 333445566665554322211 123567888888888876677788888889
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000051 2177 LSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 2256 (2612)
Q Consensus 2177 L~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~l 2256 (2612)
|+.++++.|++.+ + +.+..++|.++++|.-.+.++|..+..++...
T Consensus 891 LshVl~~vP~~vl----------------------------l------p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 891 LSHVLTNVPKQVL----------------------------L------PQFPMLLPLLLQALSMPDVIVRVSTLRTIPML 936 (1030)
T ss_pred HHHHHhcCCHHhh----------------------------c------cchhhHHHHHHHhcCCCccchhhhHhhhhhHH
Confidence 9988887776321 1 23345789999999989999999999999999
Q ss_pred HHhcChhhhhhchhhhhHHHHHHhcCCCC--HhHHHHHHHHHHHHHHhcCC-CccCchHHHHHHHHHHhcCCCHHHHHHH
Q 000051 2257 IEVTSEQSLKEFVIPITGPLIRIIGDRFP--WQVKSAILSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQDSTRTVRSSA 2333 (2612)
Q Consensus 2257 i~~~~~~~l~p~v~~i~~pLi~~l~~~~~--~~vk~~al~~L~~L~~~~~~-~l~p~lpqL~~~~~k~L~d~~~~vR~~A 2333 (2612)
....+ .-...|+..+++-++.+-.+..+ ..||..|+++|+.|.+..|. .+.||-|+.++.+.++|.|+.+-||..|
T Consensus 937 l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 937 LTESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred HHhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 88776 56778888888777766555432 57999999999999996654 5789999999999999999999999999
Q ss_pred HHHHHHH
Q 000051 2334 ALALGKL 2340 (2612)
Q Consensus 2334 a~aLg~L 2340 (2612)
+.+=+..
T Consensus 1016 v~tR~~W 1022 (1030)
T KOG1967|consen 1016 VDTRQNW 1022 (1030)
T ss_pred HHHhhhh
Confidence 9886665
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-06 Score=95.84 Aligned_cols=341 Identities=14% Similarity=0.092 Sum_probs=216.6
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hH-
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI- 1535 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i- 1535 (2612)
...+++-.+++.+......++..+|.++-... +.+...+..+=+.+.+.+.| +.+||..++.|+.+++..-.++ .+
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhh
Confidence 34455556777788888999999998885432 33444556665666777777 7789999999999998764433 11
Q ss_pred -hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1536 -ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1536 -~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~-~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
..-+..+.+.-...+..++ .+...|...+....-- .-..+--+|++...+...+..++..++.++++++-.-...+.
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 2223334443333334443 5666665422211100 011133468888999999999999999999998753222244
Q ss_pred chhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000051 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2612)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-----~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~ 1687 (2612)
+..--|.++|.+.+++.++++.++..|..+++.++.. .+|. ..-+|.+++.++++... .-.....|+-.+.-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnisi 321 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNISI 321 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhccc
Confidence 5555678999999999999999999999999998763 2232 23467888888766533 33344445544433
Q ss_pred HhChhhH---HhHhHHHHHhccCC-ChhhHhHHHHHHHHhhhhhccchhhhHH-hHHHHHHhhcCCCChhHHHHHHHHHH
Q 000051 1688 ALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGH 1762 (2612)
Q Consensus 1688 ~~g~~~l---~~llp~l~~~~~~~-~~~vR~~~~~~l~~L~~~~g~~f~p~l~-~iip~ll~~L~d~~~~VR~~Al~al~ 1762 (2612)
.-+.+.+ ..++..++..+.-. +.+.+-.+...+..++.........+.+ ..+|.+...+-|..-.+|...-.++.
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 3332221 23455566666544 4557888888888888755433333333 37788888888888888877666655
Q ss_pred HHHHHhhh-c-hhh-hhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1763 VLVEHYAT-T-SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1763 ~lv~~~~~-~-~i~-~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
.+.-+-.. . ..+ -++|.+....++++..+|-.+...++.+.
T Consensus 402 ~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 402 QLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 54321111 1 111 25666677778888888888888887763
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=99.14 Aligned_cols=319 Identities=16% Similarity=0.161 Sum_probs=212.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~ 1414 (2612)
-++.+.+.|.. +|......|.+-+..+.+.- ++..+....+++.+.+.+.........-.|..++..++.+-...-
T Consensus 72 elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 72 ELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 44667776664 45777888888887777532 233333346677777777433234455578888888887665322
Q ss_pred hhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhHHHHHHhhhcCCCh--hhHHHHHHHHHHHHh
Q 000051 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1415 ~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~ia~ 1487 (2612)
.-.+. ..+|.+++.+.+++..||+.+..+++.++..-+.. -. ...+.+++..+.+... ..-+.+.+.|..++.
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 22222 57899999999999999999999999997754332 11 4456677777665543 556778899999997
Q ss_pred h-CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHh-----hHHHHHHhhcCCCChhHH-HHHHHH
Q 000051 1488 C-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA-----SLVPTLLMGLTDPNDHTK-YSLDIL 1560 (2612)
Q Consensus 1488 ~-~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~-----~ivp~Ll~~l~d~~~~~r-~al~~L 1560 (2612)
+ .|.--...+...+|.|.+++...+++|-.-|++|+.-+...- +..++ .+.+.|.+.+.+|+..+. -++..+
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 5 333333456778888999998889999999999999887653 33333 345678888888877665 466655
Q ss_pred HhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHH
Q 000051 1561 LQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRS 1637 (2612)
Q Consensus 1561 ~~~~~~~~i~~~~l--~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~ 1637 (2612)
+..-.-.+.....+ .-.++.+...+.++...+|+.+|..++++.. +..+.+...+ ..++|.|..+|...+..+|+
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 54211111111100 1245566666777777999999999999865 3333333333 25889999999988899999
Q ss_pred HHHHHHHHHHhhhCCCCchhhHHHH
Q 000051 1638 VAARAIGSLIRGMGEENFPDLVSWL 1662 (2612)
Q Consensus 1638 ~A~~aL~~L~~~~g~~~~~~ll~~L 1662 (2612)
.|..++...... .-..++++..|
T Consensus 388 EACWAisNatsg--g~~~PD~iryL 410 (526)
T COG5064 388 EACWAISNATSG--GLNRPDIIRYL 410 (526)
T ss_pred HHHHHHHhhhcc--ccCCchHHHHH
Confidence 999998876543 22344555444
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.013 Score=77.32 Aligned_cols=268 Identities=21% Similarity=0.144 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhCC-ChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc----HHHHHHHHHhhc--CCCCh
Q 000051 2054 AHALGALAEVAGP-GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG----VESLVSELLKGV--GDNQA 2126 (2612)
Q Consensus 2054 ~~al~~La~~~g~-~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~----l~~ll~~Ll~~l--~~~~~ 2126 (2612)
.+|+..+...++. -+.+.++.|+..|+....+.+.++-....+++..++.. +.+. -..+.|..+... .++||
T Consensus 509 i~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP 587 (1005)
T KOG2274|consen 509 ISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDP 587 (1005)
T ss_pred HHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCc
Confidence 3444444444443 36788899999999988888888877788888777652 2211 122333333322 24567
Q ss_pred hHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d----~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
.+-..+-.++-.+++. ...+.++....++.++..++-++ .....-+...|..+++..+...-..+
T Consensus 588 ~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l---------- 656 (1005)
T KOG2274|consen 588 QVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL---------- 656 (1005)
T ss_pred hHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH----------
Confidence 6666666677666653 34567788888899988887554 45566677777777766554411111
Q ss_pred hhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcChhhhhhc------hhhhhHH
Q 000051 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL-ISGSAELREQAALGLGELIEVTSEQSLKEF------VIPITGP 2275 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L-~~~~~~~r~~aa~~L~~li~~~~~~~l~p~------v~~i~~p 2275 (2612)
+...+|.+.+.. .+++.+.-+.+-+|+..++..+.++...-+ +-.|...
T Consensus 657 ------------------------~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV 712 (1005)
T KOG2274|consen 657 ------------------------ICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQV 712 (1005)
T ss_pred ------------------------HHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHH
Confidence 112344444443 455677778889999999877543222111 1133444
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhHHHHHH
Q 000051 2276 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2612)
Q Consensus 2276 Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L 2354 (2612)
+-+.|+.+.+......+-..+..|..+.|..+.|-++++.+.+++-++.. ...+-..-...+.+|+. +.+++++..|
T Consensus 713 ~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~--t~~~~~l~FL 790 (1005)
T KOG2274|consen 713 LSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH--TDLDQLLNFL 790 (1005)
T ss_pred HHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh--CCHHHHHHHH
Confidence 55666554343333334444456677888888888999999888877764 66777777777777744 7889999999
Q ss_pred HHhhh
Q 000051 2355 LSSLQ 2359 (2612)
Q Consensus 2355 l~~l~ 2359 (2612)
.+...
T Consensus 791 ~Slp~ 795 (1005)
T KOG2274|consen 791 SSLPG 795 (1005)
T ss_pred HhCCC
Confidence 88443
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-06 Score=95.85 Aligned_cols=392 Identities=15% Similarity=0.145 Sum_probs=236.1
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-------ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 000051 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-------EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2612)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-------~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~ 2146 (2612)
.....++-.+..+++.++..+..+++.+....+. .+++.++.+ .+ .++..+|..++.|+..+.......
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~q---mm-td~vevqcnaVgCitnLaT~d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQ---MM-TDGVEVQCNAVGCITNLATFDSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHH---hc-CCCcEEEeeehhhhhhhhccccch
Confidence 3444555566788888888888888877655432 234444333 33 445678888888888886542222
Q ss_pred hhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcC
Q 000051 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226 (2612)
Q Consensus 2147 ~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~ 2226 (2612)
..-.....+..+.++-+..|..|+.++.++|..+...-.. ++.+..
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En----------Rr~LV~------------------------ 206 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN----------RRVLVH------------------------ 206 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh----------hhhhhc------------------------
Confidence 1111223455566666778889999999999887653211 111110
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-ChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000051 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVT-SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2612)
Q Consensus 2227 l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~-~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2612)
..-+|.+...+.+++.+++..+..+|+.+.-.. ....+...-+.+++.|+..+.+. ++.+|..|-.+|+.+......
T Consensus 207 -aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 207 -AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred -cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchh
Confidence 113678888899999999999999999886321 11123333355777788888775 788999999999988754321
Q ss_pred CccCch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC----hh-HHHHHHHHhhhcCC-HHHHHHHHHHHHHHHH
Q 000051 2306 ALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----VD-PLVGDLLSSLQVSD-AGIREAILTALKGVLK 2378 (2612)
Q Consensus 2306 ~l~p~l-pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~----~~-~~l~~Ll~~l~~~d-~~vr~~~l~AL~~vi~ 2378 (2612)
. .+.+ ..-+|.+++.++++.-..-.....|+.++.....+ ++ .++..|+..+...| .+++-.+...|+.+..
T Consensus 285 q-~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 Q-REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred h-hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 1 1111 11245677788888666666777788777332211 22 36777999998766 5588888888888765
Q ss_pred hcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHh
Q 000051 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 2458 (2612)
Q Consensus 2379 ~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~ 2458 (2612)
....+...-.-...++.+.+++.|...++|.-...|+..|+....... .+++
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~--~lld-------------------------- 415 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKE--ALLD-------------------------- 415 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHH--HHhh--------------------------
Confidence 443333222223345556667777778888888888887775433210 0000
Q ss_pred hCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhc--------cCCCCchhhHHHHHHHHhhcCCCCH
Q 000051 2459 HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQ--------SGPANTTVVVDILASVVSALHDDSS 2530 (2612)
Q Consensus 2459 ~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~--------~~~~~~~~l~~~l~~~~~~l~~~~~ 2530 (2612)
. -+++.++....+.+.++|.||+.|++.+-..... -.|. ..+...+..|+ .++..
T Consensus 416 --------~----gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl---~S~~~ 478 (550)
T KOG4224|consen 416 --------S----GIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFL---ASHEL 478 (550)
T ss_pred --------c----CCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHH---hhhHH
Confidence 0 0123334445556666777777776665433210 0111 12333444443 36677
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000051 2531 EVRRRALSALKSVAKANPSAI 2551 (2612)
Q Consensus 2531 ~vr~~a~~~l~~~a~~~~~~v 2551 (2612)
.+|-.+..++..+++.+-..+
T Consensus 479 tf~hia~wTI~qLle~h~~~~ 499 (550)
T KOG4224|consen 479 TFRHIARWTIQQLLEDHDLPL 499 (550)
T ss_pred HHHHHHHHHHHHHHHhCCccH
Confidence 888888888888888664443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.6e-06 Score=107.90 Aligned_cols=302 Identities=17% Similarity=0.242 Sum_probs=201.3
Q ss_pred HHHHHHHhhcC-CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--
Q 000051 1577 LVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-- 1653 (2612)
Q Consensus 1577 iip~L~~~l~d-~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-- 1653 (2612)
+++.+...++. ...+.|..|...+..++..+.+ ..-++.++|.+..++.|+...||..|..+|..+...+.+-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 44444444332 2357788899988888876544 3357889999999999999999999999999988765432
Q ss_pred ----Cc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHh--ccCCChhhHhHHHHHHHHhhhh
Q 000051 1654 ----NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--CSHQRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1654 ----~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~--~~~~~~~vR~~~~~~l~~L~~~ 1726 (2612)
.| +-++|.|-..+.+.....+|...|.+|+.++...-. +-+.-..+-.. .++++.+. .+.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r--Fle~~q~~~~~g~~n~~nset----------~~~- 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR--FLELTQELRQAGMLNDPNSET----------APE- 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH--HHHHHHHHHhcccccCccccc----------ccc-
Confidence 23 345677765555535566888888888887654321 11111111111 23333320 000
Q ss_pred hccchhhhH----HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhch-hhhhHHHHhhccCCCchHHHHHHHHHHHH
Q 000051 1727 LGVQFQNYL----QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2612)
Q Consensus 1727 ~g~~f~p~l----~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~-i~~llp~L~~~l~d~~w~vR~~a~~ll~~ 1801 (2612)
..+..++ ..+-......+.|+.+.||.+-++.+..++..+|... -+.+++.+...++|++|+.|.+-.+-+.
T Consensus 566 --~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~- 642 (1431)
T KOG1240|consen 566 --QNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV- 642 (1431)
T ss_pred --cccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhcc-
Confidence 1122222 2233455667889999999999999999999998764 4669999999999999999986554433
Q ss_pred HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChh-hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH
Q 000051 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2612)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~-~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~ 1880 (2612)
|++. .+|.. .-+-+++.|..++.|....|-..|+..+..+++.. ---+
T Consensus 643 ------gvsi------------------------~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K 691 (1431)
T KOG1240|consen 643 ------GVSI------------------------FVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRK 691 (1431)
T ss_pred ------ceEE------------------------EEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccch
Confidence 3211 01111 01235666677899999999999999999999842 1113
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-----hhhhHHHHHh
Q 000051 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILS 1929 (2612)
Q Consensus 1881 ~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~ 1929 (2612)
+++-.+++.+..+|.+++.-+|..++..+..+.+.++.. +.|.+-|.+.
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 556667777777789999999999999999998887653 3455555544
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.014 Score=74.95 Aligned_cols=276 Identities=18% Similarity=0.288 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHH---hhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh--------h--hhhchhH
Q 000051 1435 AVREAAECAARAMMS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL--------S--QCLPKIV 1501 (2612)
Q Consensus 1435 ~VR~aa~~al~~i~~---~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l--------~--~~L~~iv 1501 (2612)
.+|+.--.-.+.+.. .+--..+...+...+..-.+.+|..-..|+..+..++++.+..- + ..+..+.
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 466654333333322 22222345555555555567789999999999999998754321 1 1122334
Q ss_pred HHHh--hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000051 1502 PKLT--EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1502 p~L~--~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
+.+. +++.++|+.|+-.-.+.+.+-.+.+.. -...+|.++.+.-|+
T Consensus 494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~--esq~ip~vL~aFld~------------------------------ 541 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFST--ESQKIPLVLNAFLDS------------------------------ 541 (980)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--chhhhHHHHHHHccc------------------------------
Confidence 4333 355677888876666665554433321 012344444433322
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHH------------HHHHHHHHHHHH
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV------------RSVAARAIGSLI 1647 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~V------------R~~A~~aL~~L~ 1647 (2612)
+|+.+.+.+||..|.-....+.+.+. +.+.||.+.++..+..+|..+.+.. +-...+++|-+.
T Consensus 542 ---rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI 616 (980)
T KOG2021|consen 542 ---RGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVII 616 (980)
T ss_pred ---hhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEE
Confidence 34444555666666666655555432 3566666666666666663211111 112222223222
Q ss_pred hhhC--CC----Cchh---------hHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHhCh-----------hhHHhH
Q 000051 1648 RGMG--EE----NFPD---------LVSWLLDALKSDNSN----VERSGAAQGLSEVLAALGT-----------VYFEHI 1697 (2612)
Q Consensus 1648 ~~~g--~~----~~~~---------ll~~L~~~L~~~~~~----~~R~~aa~~L~~i~~~~g~-----------~~l~~l 1697 (2612)
..-. .+ +... .+-.+...+.++... ..-..++.+++...+++.. ..+...
T Consensus 617 ~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ 696 (980)
T KOG2021|consen 617 TLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNI 696 (980)
T ss_pred eCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHH
Confidence 2100 00 1111 111111222222221 2234455555555554321 123444
Q ss_pred hHHHHHhcc--CCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1698 LPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1698 lp~l~~~~~--~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
++.++..+. .....+|.+.-..++++..++|++.-||+++.+..+++...
T Consensus 697 ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 697 LDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 444433332 23556777777777777777787777888877777776643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=106.41 Aligned_cols=303 Identities=19% Similarity=0.202 Sum_probs=207.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
++..+..+++.-+-.+.|.+|+..+..++....+ +..+..++|.++.++.|+.+.||-.|..++-.+.....+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~---- 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI---- 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC----
Confidence 4555666666655567788899988888877653 4567789999999999999999999988877664322111
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
.|....-+-.-|+|.|-.++.| ....||-+-+.+|+.+++... .+..
T Consensus 497 ------------------------------~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 497 ------------------------------PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred ------------------------------CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 0111001113467888888999 677899999999999987541 1111
Q ss_pred HHHHHHhh--cCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh
Q 000051 1538 LVPTLLMG--LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2612)
Q Consensus 1538 ivp~Ll~~--l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2612)
....+-.. +++|+..+. ... ....+...
T Consensus 545 ~~q~~~~~g~~n~~nset~-------------------------------------------------~~~-~~~~~~~~ 574 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETA-------------------------------------------------PEQ-NYNTELQA 574 (1431)
T ss_pred HHHHHHhcccccCcccccc-------------------------------------------------ccc-ccchHHHH
Confidence 11111111 222222100 000 00011111
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH
Q 000051 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2612)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2612)
....+-.....++.|+.+-||.+-.+.|+.|+..+|.+.- +-+++.|+..|.+. +...|....+.+..++--+|....
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG~rs~ 653 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVGWRSV 653 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEEeeeeH
Confidence 2222334445667788899999999999999999998754 45677777777544 677888888888888777787744
Q ss_pred -HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000051 1695 -EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2612)
Q Consensus 1695 -~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~ 1771 (2612)
+.++|-+.+.+.|+.+.|-..++.++..|++. |--=.+++-+++..++..|.+++..||.+++..+..+...++.-
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 56789999999999999999999999888864 21114788889999999999999999999998888877776553
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.016 Score=75.02 Aligned_cols=220 Identities=18% Similarity=0.219 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc-----CCCCHHHHHHH-HHHHHHHHHhhcHH-hH-----HhHHH
Q 000051 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----SDQVVAVREAA-ECAARAMMSQLSAQ-GV-----KLVLP 1461 (2612)
Q Consensus 1394 ~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l-----~D~~~~VR~aa-~~al~~i~~~l~~~-~v-----~~ilp 1461 (2612)
+.|-.|-..+-.+.+..+..+.|++..++....++. .|-+.-+++.| ..+.+..+..+++. .+ ..++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 466667777777777777777777777766656665 34445555544 34444444444333 12 44455
Q ss_pred HHHhhhcCCChhh-HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcC--ChhHhh
Q 000051 1462 SLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK--NPEIAS 1537 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~-r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~--~~~i~~ 1537 (2612)
.+- .+..+.|. |+-.+.++|.+..- ++....-+.+...++++++|. +..||-++.+++.-..+... ...+.+
T Consensus 492 El~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 492 ELA--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred Hhh--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh
Confidence 544 22334433 66677888888752 222222345566778889998 66789999999998887653 111222
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
++|.+...+ -.+++... +-++|......++.+...++. .+.||.
T Consensus 568 ~lenlf~~l----------------------------fkll~~~~------e~Dtk~~VL~~ls~lI~r~~e--~I~P~~ 611 (978)
T KOG1993|consen 568 YLENLFVLL----------------------------FKLLKAVE------ECDTKTSVLNLLSTLIERVSE--HIAPYA 611 (978)
T ss_pred hHHHHHHHH----------------------------HHHHHHHh------hhhhHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 222222110 00111111 135566666666666665432 455776
Q ss_pred hhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1618 GLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1618 ~~ll~~L~~~L~--d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
..++..+-.+-. ...+-.|.+...++..++.++|.+
T Consensus 612 ~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 612 STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 666655554443 356789999999999999999976
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-06 Score=110.88 Aligned_cols=340 Identities=17% Similarity=0.201 Sum_probs=223.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC--chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~--~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2612)
.+..+...+.-..+..-..++.++..++...|... ...+++ .+..+. +..+|..+...+.++.+..|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34445555556667777788888888888777542 122222 112222 234677888888888777776522111
Q ss_pred hHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCC---ChhHHHHHHHHHHHH----------
Q 000051 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE---NESVRDAALGAGHVL---------- 1764 (2612)
Q Consensus 1698 lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~---~~~VR~~Al~al~~l---------- 1764 (2612)
.+......++.+..+.|..-..+...--+.......++ +..-+......+...
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 13334444555554444322222222222222222221 111000000000000
Q ss_pred -HHHh-hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhH
Q 000051 1765 -VEHY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2612)
Q Consensus 1765 -v~~~-~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~ 1842 (2612)
...+ ..+..+.+.|.+...+.+++|+.|.++++-+...+..-.+. -... +.
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----------~~~~-----------------~~ 293 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----------IVKG-----------------YT 293 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----------cccC-----------------cc
Confidence 0001 11234557788899999999999999999888887542200 0000 11
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhh
Q 000051 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~ 1922 (2612)
+.+.-.+-....|.+..|-..|+.++..++...+..++.|....++.++.++.+.....|.....++..++.. ..+.
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~ 370 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLS 370 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHH
Confidence 1122222334689999999999999999999999889999999999999999999999999999999888873 2466
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~-l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
.+.+.+..++++.+|..|..+..++...+...++.. ...-..+++|.+....+|.+.+||.+|..+++.+++.+|...+
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 788888899999999999999999998888777432 2445689999999999999999999999999999999998766
Q ss_pred hhhHHH
Q 000051 2002 DEIVPT 2007 (2612)
Q Consensus 2002 ~~ilp~ 2007 (2612)
..++..
T Consensus 451 ~k~L~~ 456 (815)
T KOG1820|consen 451 KKLLKD 456 (815)
T ss_pred HHHHHh
Confidence 655443
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0058 Score=78.16 Aligned_cols=257 Identities=14% Similarity=0.176 Sum_probs=165.1
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
.+-.+++-+.++..+.+.-+.+|.-|+..+..+|...+.. +...++.|..-++|+|+.|+.+|...++.+.+..|+
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 3446788899999999999999999999999888765544 445566677778999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhhhhhhhhcCC-c----ccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 000051 2187 EVQPSYIKVIRDAISTSRDKERRKKKGG-P----ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261 (2612)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~-~----~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~ 2261 (2612)
.+++ +-|.+...+.+.... |..- . ..+... -|+--.-++|.+.+.+.+.+. .....+|+..++...=
T Consensus 215 nyL~-LAP~ffkllttSsNN----WmLIKiiKLF~aLtpl-EPRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 215 NYLQ-LAPLFYKLLVTSSNN----WVLIKLLKLFAALTPL-EPRLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSM 286 (877)
T ss_pred cccc-ccHHHHHHHhccCCC----eehHHHHHHHhhcccc-CchhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehh
Confidence 8764 222222222221100 1000 0 001100 133334466666666654432 1234567777775510
Q ss_pred hhhhhhchh--hhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 2262 EQSLKEFVI--PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339 (2612)
Q Consensus 2262 ~~~l~p~v~--~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~ 2339 (2612)
......+.. ++.-.=+|.+-+..+++.|...+.+++.++..-+..+ ..-...+++||.|.++.+|.+|...|-.
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V----qa~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV----QAHKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH----HHhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 011111111 1111112344344588999999999999987655433 3345678899999999999999988776
Q ss_pred HHhccCChhHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHhc
Q 000051 2340 LSALSTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHA 2380 (2612)
Q Consensus 2340 L~~~~~~~~~~l~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~ 2380 (2612)
++. ..++..++..|+..+..++ ...|..++.-+-+++...
T Consensus 363 mVs-kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 363 MVS-KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred Hhh-hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 643 3677888899998886555 467777776666666543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0036 Score=77.39 Aligned_cols=289 Identities=14% Similarity=0.059 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh
Q 000051 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2612)
Q Consensus 1841 ~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2612)
.+..+.+-|-..++|.-..|.-.+++.+.++.... +. +++...+..+-.+|.++....|..|.+.|.++.-..+..
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 33444444444567777778888888887776533 32 456667777888889999999999999999998776554
Q ss_pred hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
+ ...-+.+...+.|.+..+ +.+++..++..-..+.+ +.++..+...+.|-....+..+..|+.+++-.+..
T Consensus 338 v-~vcN~evEsLIsd~Nr~I---styAITtLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~- 408 (898)
T COG5240 338 V-SVCNKEVESLISDENRTI---STYAITTLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS- 408 (898)
T ss_pred e-eecChhHHHHhhcccccc---hHHHHHHHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-
Confidence 2 122333455555655443 45566666554333333 33444444444444444445555666666554433
Q ss_pred hhhhhHHHHHHhccCCCc---chHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHH
Q 000051 2000 AIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076 (2612)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~~---~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il 2076 (2612)
-...++..|.+.|.++.. ..++.+++..++..- | ....+|+..|++
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~---------------p--~skEraLe~LC~-------------- 457 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND---------------P--DSKERALEVLCT-------------- 457 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC---------------c--hHHHHHHHHHHH--------------
Confidence 334566666666655332 134455555544210 0 123344444433
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHH
Q 000051 2077 PALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMI 2155 (2612)
Q Consensus 2077 ~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il 2155 (2612)
++.|.. ..+.+...++.+...... ..-..++..+..++-=++..+|.+|+.+|..|+-+....+.+ ..+.
T Consensus 458 -----fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~ 528 (898)
T COG5240 458 -----FIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVE 528 (898)
T ss_pred -----HHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHH
Confidence 332221 111222233333322211 112234445555554567899999999999997655433332 3555
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHH
Q 000051 2156 STLIVLLSDSDSTTVAAAWEALSRVV 2181 (2612)
Q Consensus 2156 ~~L~~ll~d~d~~V~~~a~~aL~~l~ 2181 (2612)
..|-++++|.|.+||+.|..++..+-
T Consensus 529 ~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 529 NALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 66677899999999999988887764
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=85.42 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh
Q 000051 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
.|.+++.++..++.+++..+.+|+..++|.++.++.|++..||..|++++-.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni--------------------------- 54 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNI--------------------------- 54 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH---------------------------
Confidence 68899999999999999889999999999999999999888887776665555
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
+......+-.++++|++.+.+++.|+++.||.+|. .|.++
T Consensus 55 -----------~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 55 -----------SKVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 33334445557899999999999999999999884 44443
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00087 Score=87.81 Aligned_cols=225 Identities=16% Similarity=0.205 Sum_probs=166.8
Q ss_pred hHhhHHHHHHHhc-CCCCHHHHHHHHHHHHHhhhhcc-cccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhcccch
Q 000051 2071 HLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2612)
Q Consensus 2071 ~l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~~~-~~~l~~ll~~Ll~~l-~~~~~~vR~~A~~~L~~l~~~~~~~~ 2147 (2612)
....++..++... ..+++..|..+..++..++..+. ++.+..++..+.... ...+...|..++..+.-+.+..-...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4555667777664 45568889999999998888764 356788888887777 55667777777777766665543444
Q ss_pred hccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2148 ~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
.+...+++..|+.++++ +++...+..+++-++...+. .+.. .. . ..+.-+...+-.
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~~-----------~~--------~--a~vklLykQR~F 321 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLNK-----------EN--------H--ANVKLLYKQRFF 321 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcCc-----------cc--------c--chhhhHHhHHHH
Confidence 57778889999999987 56777788888877764221 1100 00 0 011111122445
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000051 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2612)
..++|.++++....+.+.|.....+++.++++++.+.+.++++.+.+-|++.+.-. +.+++.+++.+|..++...+..+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHH
Confidence 67899999999988888999999999999999998899999999999999999754 77899999999999998888778
Q ss_pred cCchHHHHHHHHH
Q 000051 2308 KPFLPQLQTTFIK 2320 (2612)
Q Consensus 2308 ~p~lpqL~~~~~k 2320 (2612)
.+|+..+++.+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877765
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00094 Score=86.95 Aligned_cols=460 Identities=17% Similarity=0.181 Sum_probs=261.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-hcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhc
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~-l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~ 1498 (2612)
..++.+...+++..+.-|.. +++.+... .-+.++..++|.+++.++..+-..|+-+-.-+...+..-|+.-.
T Consensus 13 ~ei~elks~l~s~~~~kr~~---a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~---- 85 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKD---AVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI---- 85 (734)
T ss_pred hhchHHHHHhhhhhhhhHHH---HHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----
Confidence 34444444444443333332 33333332 22356778888888888877777777666666666666555432
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000051 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
..++.+++-+.|+++.+|..|.+.++.+.- +.... .+.
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~e---------------------------------------y~~ 123 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITE---------------------------------------YLC 123 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHH---------------------------------------HHH
Confidence 234455666788888888888877665431 01112 233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC----
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---- 1654 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~---- 1654 (2612)
..+.++++|.++.+|+.++.++..+... +++.. .-..+++.+..++.|.+|.|-..|..++..+.+.-....
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 3445566666777777777777666543 11111 123478888888999999999999999999888654322
Q ss_pred chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh--HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~--l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
-..++..+++.+..-+.+ -+ +..+.........+. ...++..+...+.+.++.+--++...+-.+...+...-.
T Consensus 200 ~~~~~~~lL~al~ec~EW-~q---i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~ 275 (734)
T KOG1061|consen 200 NPQLINKLLEALNECTEW-GQ---IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE 275 (734)
T ss_pred cHHHHHHHHHHHHHhhhh-hH---HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH
Confidence 234445555554433222 11 222233333333322 234555555556666666666666666666655554333
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000051 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~ 1812 (2612)
.++.++-|+++..+..+. .+.-.+++-...++...+. ....-+..+.-...|..+ +...=+
T Consensus 276 ~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiY-vK~eKl---------------- 336 (734)
T KOG1061|consen 276 LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIY-VKLEKL---------------- 336 (734)
T ss_pred HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchh-hHHHHH----------------
Confidence 456677788887777665 6666777766666554332 111000000000011110 111111
Q ss_pred ccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 000051 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2612)
Q Consensus 1813 ~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~ 1892 (2612)
+.+......+...+++..+...-.+.+.+.-+.|+.+++.++...... ..+++.++.
T Consensus 337 ------------------eil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLe 393 (734)
T KOG1061|consen 337 ------------------EILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLE 393 (734)
T ss_pred ------------------HHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHH
Confidence 112222223344456666666667777888888999999887654432 445555666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH
Q 000051 1893 SLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2612)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2612)
.+.-.-.-+-+.+...+.++.++.+... ..+++.+...+.+ .+|+.|.+..+.+|+-..... -...++..+.
T Consensus 394 ll~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~ 466 (734)
T KOG1061|consen 394 LLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFL 466 (734)
T ss_pred HHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHH
Confidence 6653333345556777888888876654 5566666665554 578889988888887543332 2355666667
Q ss_pred HHhcCCcHHHHHHH
Q 000051 1972 TALCDSILEVRESA 1985 (2612)
Q Consensus 1972 ~~L~D~d~~Vr~~A 1985 (2612)
+.+.|....|+-.-
T Consensus 467 en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 467 ENFKDETAEVQLEL 480 (734)
T ss_pred hhcccchHHHHHHH
Confidence 77777777776543
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00064 Score=89.00 Aligned_cols=360 Identities=18% Similarity=0.181 Sum_probs=216.4
Q ss_pred HHHHHHhhcCCCh--HHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc---
Q 000051 1340 SRLLDQLMKSDKY--GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--- 1414 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~--~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~--- 1414 (2612)
|.++..|.+.++. .........|+.+......-......++..+...++.+.+...-...+..+..+.+......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 3455555544321 23334444455554432211111114555555555544456666677777777766544322
Q ss_pred --hhhHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhc----------CCCh--
Q 000051 1415 --EPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----------DKAW-- 1472 (2612)
Q Consensus 1415 --~~~v~~-ilp~ll~~l~-----D~--~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----------~~~w-- 1472 (2612)
.-|... ++|.++.... +. ++.+-+.+...++.++..++....+.++..+...+- +..+
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 334443 7777776542 12 256777778888888888888877666666655432 1111
Q ss_pred hhHHHHHHHHHHH-HhhCchhhhhhhchhHHHHhhhhc-CCCHHHHHHHHHHHHHHHhhcCCh-hHhhHHHHHHhhcCCC
Q 000051 1473 RTKQSSVQLLGAM-AYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDP 1549 (2612)
Q Consensus 1473 ~~r~~a~~~L~~i-a~~~p~~l~~~L~~ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ivp~Ll~~l~d~ 1549 (2612)
......+.++..+ +...++...+....++..++.... ..++..|..+++++..+...+.+. .++.++..+......
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~- 240 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS- 240 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc-
Confidence 1222233333333 332333222244556666666543 345889999999999888765433 345555554444300
Q ss_pred ChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc---CCCCcchhhHhhhHHHHHH
Q 000051 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV---TEPKDMIPYIGLLLPEVKK 1626 (2612)
Q Consensus 1550 ~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~---~~~~~l~~~l~~ll~~L~~ 1626 (2612)
......+..+..++..+.+.. ++ |....+...+.+
T Consensus 241 -------------------------------------~~~~~~~~~~~~~~~Wi~KaLv~R~~-----~~~~~~~~~L~~ 278 (415)
T PF12460_consen 241 -------------------------------------SEDSELRPQALEILIWITKALVMRGH-----PLATELLDKLLE 278 (415)
T ss_pred -------------------------------------cCCcchhHHHHHHHHHHHHHHHHcCC-----chHHHHHHHHHH
Confidence 001122222222222222211 12 233445666666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCC----------------CCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 000051 1627 VLVDPIPEVRSVAARAIGSLIRGMGE----------------ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2612)
Q Consensus 1627 ~L~d~~~~VR~~A~~aL~~L~~~~g~----------------~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g 1690 (2612)
++.+ +++...++++++.+....++ ..|..++|.+++..++..+. .|.....+++.+++..+
T Consensus 279 lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 279 LLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVP 355 (415)
T ss_pred HhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCC
Confidence 7766 67888888888888765221 14678899998888765543 67777889999999888
Q ss_pred hhh----HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhh
Q 000051 1691 TVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2612)
Q Consensus 1691 ~~~----l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~ 1745 (2612)
... ++.++|-+++.+..+++.++.+++..+..+...-++.+.+|+..++|.+++.
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 763 4788999999999999999999999999999888888999999999998864
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.17 Score=76.42 Aligned_cols=602 Identities=19% Similarity=0.214 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHHhCh---hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhH
Q 000051 1677 GAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 1753 (2612)
Q Consensus 1677 ~aa~~L~~i~~~~g~---~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~V 1753 (2612)
.+..+++......+. +..+.....++..+.+....-|-.+......++...+..|.||+..++..++..+.|++..+
T Consensus 112 ~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i 191 (2341)
T KOG0891|consen 112 LAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAI 191 (2341)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhh
Confidence 444555555443332 23344455566666444455566778888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHhhc-------cCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch
Q 000051 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDG-------IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2612)
Q Consensus 1754 R~~Al~al~~lv~~~~~~~i~~llp~L~~~-------l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~ 1826 (2612)
|..+..++.......+++.....++.+.++ +..+.-. --++....+++++. .
T Consensus 192 ~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~-~~~~~~~~~e~~~~-~------------------- 250 (2341)
T KOG0891|consen 192 RLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVK-IHASLLVYNELLRI-S------------------- 250 (2341)
T ss_pred hHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchHHH-hhhHHHHHHHHHHH-H-------------------
Confidence 999999998877666655411111112111 1111100 00001111111110 0
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH-HHHHHHHHHHHHHhcCCCHHHHHHH
Q 000051 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK-EIMPVLMNTLISSLASSSSERRQVA 1905 (2612)
Q Consensus 1827 ~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~-~~l~~ll~~L~~~L~~~~~~~R~~A 1905 (2612)
.. +.+.. +.+-.....+..-.+..++..-......++...+..|. .|+.+.+..++..+.. ....+
T Consensus 251 ---~~-~~~~~-----~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~ 317 (2341)
T KOG0891|consen 251 ---DP-FLEKY-----DSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRK----EKTRA 317 (2341)
T ss_pred ---HH-HHHhh-----HHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhc----cchhH
Confidence 00 00000 00000000000001111222222222333333333332 3455555555555541 11667
Q ss_pred HHHHHHHHHHhchhhhhhH---HHHHhhhcCCCChhHHHH---HHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcH
Q 000051 1906 GRALGELVRKLGERVLPSI---IPILSRGLKDPSASRRQG---VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2612)
Q Consensus 1906 ~~aL~~lv~~~~~~~l~~l---lp~L~~~L~d~~~~vR~~---a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~ 1979 (2612)
...++.+.-.++....+.. ...+...+...+-..++. ....++.+....++.........++..+...... .
T Consensus 318 ~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~--~ 395 (2341)
T KOG0891|consen 318 FVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLS--D 395 (2341)
T ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCch--H
Confidence 7777777766665432221 112222222111111111 1122333323333333333334444444332211 1
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcc--cccccccchhhccCC-----cch-
Q 000051 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT--TAVLPHILPKLVHLP-----LSA- 2051 (2612)
Q Consensus 1980 ~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~--~~vlp~Lip~L~~~~-----~~~- 2051 (2612)
.-..++-.+....++ -...+.+.++..+ ..++.... ....+..+|.+..+. .+.
T Consensus 396 ----~l~e~l~~l~~rl~~-l~~~i~~rll~~~-------------~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~~ 457 (2341)
T KOG0891|consen 396 ----SLLERLFILSQRIPK-LGQSIQDRLLNMT-------------SQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGDS 457 (2341)
T ss_pred ----HHHHHHHHHHHhccc-hhhHHHHHHHHHH-------------HHHHhCccccCccccCccchhcccchhhhhcccc
Confidence 111122222222221 1112233333221 11111000 000011222222111 010
Q ss_pred --hHHHHHHHHHHH--hCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc---------ccHHHHHHHHH
Q 000051 2052 --FNAHALGALAEV--AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELL 2118 (2612)
Q Consensus 2052 --~~~~al~~La~~--~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~---------~~l~~ll~~Ll 2118 (2612)
....++..+... .+.+...++..+++... ...++++|..+..++..++..... ..+..++..+.
T Consensus 458 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 458 TDDIQLAFKTLGGFKFSGYSLTLFVQQCVDSYL---EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred cHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 111233333221 23344445554444433 456677887776655555442211 11344444444
Q ss_pred hh-cCCCChhHHHHHHHHHHHHHHhcccchhc--cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHH
Q 000051 2119 KG-VGDNQASIRRSSAYLIGYFYKNSKLYLVD--EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2612)
Q Consensus 2119 ~~-l~~~~~~vR~~A~~~L~~l~~~~~~~~~~--~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2612)
.. +.+.++.+|......+. ..+.+ .-+..+..++..+.|..-..+.++...++++....+.-.++.+...
T Consensus 535 ~~aia~~~~~i~~~v~~~l~-------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN-------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc-------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHH
Confidence 33 35677888877766655 11111 2356777788888898888999998888888876665555554444
Q ss_pred HHHHHHhhhhhhh-hh--hcCCc--ccccCCC--CCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhc
Q 000051 2196 IRDAISTSRDKER-RK--KKGGP--ILIPGFC--LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF 2268 (2612)
Q Consensus 2196 l~~~l~~~~~~~~-~~--~~~~~--~~l~g~~--~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~ 2268 (2612)
.........-... +. ..+.. ..+.+.. .-.++.+++-.+...+.+++.-+-..+..+++.++...| ..++.+
T Consensus 608 ~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~ 686 (2341)
T KOG0891|consen 608 LLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKW 686 (2341)
T ss_pred HHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhc
Confidence 3333222111000 00 00000 0000000 001223344444455555666666778899999999888 667777
Q ss_pred hhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhc
Q 000051 2269 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL--PQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL 2343 (2612)
Q Consensus 2269 v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l--pqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~ 2343 (2612)
+.....-+...+++..+...+.+++.+++.+.+..+..+.|+. |.+...+..-+... ...+|..+...+|.+...
T Consensus 687 ~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 687 VDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 7766666677777776778899999999999998888888876 77888888777665 789999999999966443
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0026 Score=77.13 Aligned_cols=509 Identities=17% Similarity=0.188 Sum_probs=268.3
Q ss_pred CHHHHHHHHHHHHHHHhcChh-hHHHHHHHHHH---------HHHHHhcCCCHHHHHHHHHHHHHHHHHh----------
Q 000051 1857 SLSVRQAALHVWKTIVANTPK-TLKEIMPVLMN---------TLISSLASSSSERRQVAGRALGELVRKL---------- 1916 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~-~l~~~l~~ll~---------~L~~~L~~~~~~~R~~A~~aL~~lv~~~---------- 1916 (2612)
..+||..|+.++..+....|+ .+..|+..++| .+.-.++|+++..|..|.+.+..+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 457899999988888776653 34445554444 1233467999999999999998887542
Q ss_pred chh-hhh----------hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhH-HHhHhHHHHHHHHHhcCCcHHHHH
Q 000051 1917 GER-VLP----------SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRE 1983 (2612)
Q Consensus 1917 ~~~-~l~----------~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~D~d~~Vr~ 1983 (2612)
|+. +.| .....+...+. +..+.+-...+.+|..++....-..+ ..++..++..+.+.+...|+.||-
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 111 111 12222222232 34566666777888888776665555 356788889999999999999998
Q ss_pred HHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcc-------hHHHHHHHHHhhhc--------ccc-------cccccc
Q 000051 1984 SAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-------DTALDGLKQILSVR--------TTA-------VLPHIL 2041 (2612)
Q Consensus 1984 ~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-------~~al~~L~~il~~~--------~~~-------vlp~Li 2041 (2612)
.+...++.+..... ..|.+-..+..+..+ ...-+..++++... +.. ++...+
T Consensus 169 s~l~~~~~~v~t~~------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~ 242 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHA------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCI 242 (728)
T ss_pred HHHHHHHHHHhcCC------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeee
Confidence 88877777654321 122222222111000 00111122222110 000 000000
Q ss_pred hhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHh
Q 000051 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLK 2119 (2612)
Q Consensus 2042 p~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~ 2119 (2612)
.....++-..+..+ ....++|. +..+ ..+|-.+...+..+...++ ..++-.+...+..
T Consensus 243 ~i~~~~~~~s~~~~---~~~~~~~~----------------~~~p-s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~ 302 (728)
T KOG4535|consen 243 SIVVLPKEDSCSGS---DAGSAAGS----------------TYEP-SPMRLEALQVLTLLARYFSMTQAYLMELGRVICK 302 (728)
T ss_pred eeeecCCccccchh---hHHhhhcC----------------ccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00000111111110 00111111 1111 2355556666655555443 2445667777777
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCcccc----ccHH
Q 000051 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS--VPKEVQ----PSYI 2193 (2612)
Q Consensus 2120 ~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~--~~~~~l----~~lv 2193 (2612)
.+.+.++.+...+..++..+.......+.|. .....+....+ ..+... .+...+ +.+.
T Consensus 303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~-------------~~k~~~q~~~f---w~~~l~~p~~~~~YDs~~~Tl~ 366 (728)
T KOG4535|consen 303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPD-------------STKAPDQRAPF---WTMMLNGPLPRALYDSEHPTLQ 366 (728)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhhhcCCC-------------cccchhhhccH---HHHHccCCChhhhhhhcCCCch
Confidence 7888888888888888777765443222221 01112222211 111111 111111 1111
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhh
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPI 2272 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i 2272 (2612)
......+... + ..+-..+|.+-....++|+.|..+. +.-+|..|..+++-++-+-+-.....|+..-
T Consensus 367 ~s~Cdals~i---------~---~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 367 ASACDALSSI---------L---PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hHHHHHHhhc---------C---chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 1111111111 0 1222335666677888898888743 2335666777777666554433344455555
Q ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc---cCch----HHHHHHHHHH--hcCC-CHHHHHHHHHHHHHHHh
Q 000051 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL---KPFL----PQLQTTFIKC--LQDS-TRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2273 ~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l---~p~l----pqL~~~~~k~--L~d~-~~~vR~~Aa~aLg~L~~ 2342 (2612)
.....+.++|+ .-.+|..+.+++|.|....-..+ +.+. ..++...+.. ..+. +..||.+|..+||++..
T Consensus 435 a~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 55566777764 55677888888887765432221 1122 2223322222 2333 67899999999999854
Q ss_pred c-cCChhHHHHHHHHhhh----c-----CCHHHHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHhhcC-CCHHHHHH
Q 000051 2343 L-STRVDPLVGDLLSSLQ----V-----SDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKDLVYH-DDDHVRVS 2410 (2612)
Q Consensus 2343 ~-~~~~~~~l~~Ll~~l~----~-----~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~~l~~-~~~~vr~~ 2410 (2612)
+ ++-..+-+.++++.-. . ....||-++++++..++++-.-.+ ..+..+.+++.|..++.+ .+=.+|..
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 3 2222223334433321 1 135789999999999998654323 236777888888777765 46689998
Q ss_pred HHHHHHHHHh
Q 000051 2411 AASILGIMSQ 2420 (2612)
Q Consensus 2411 aa~~Lg~L~~ 2420 (2612)
||.+|.--++
T Consensus 594 AA~aL~vp~~ 603 (728)
T KOG4535|consen 594 AAAALSVPGK 603 (728)
T ss_pred hhhhhcCCCC
Confidence 8887765444
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.018 Score=71.56 Aligned_cols=289 Identities=15% Similarity=0.163 Sum_probs=167.8
Q ss_pred hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000051 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1572 ~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g 1651 (2612)
..+.++.|.|...+.+.-.-+...++..+..++..- --..++++.+..|...|..+....|-.|.+.|..++-..+
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 445678888888888876677777777777665431 1123567788888889999989999999999999988765
Q ss_pred CCC--chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1652 EEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1652 ~~~--~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
+.. .+.=+ +.|-++. .|..+..++..+++.-..+..+.++..+.....+-++..+.-++.++..++..|+.
T Consensus 336 ~kv~vcN~ev----EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 336 QKVSVCNKEV----ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred ceeeecChhH----HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 441 11111 2222332 35556667777777655566666666665555555556666667777777777776
Q ss_pred chhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000051 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2612)
Q Consensus 1730 ~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~ 1809 (2612)
.-..|+.-+...+++ ...-+.+..+.+++..+++..++. |..+++.+.+++
T Consensus 409 k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~s--------------------kEraLe~LC~fI------ 459 (898)
T COG5240 409 KKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDS--------------------KERALEVLCTFI------ 459 (898)
T ss_pred HHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchH--------------------HHHHHHHHHHHH------
Confidence 544444433333332 112234455555555544432211 122222333322
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhH--HHHHHHHH
Q 000051 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLM 1887 (2612)
Q Consensus 1810 ~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l--~~~l~~ll 1887 (2612)
.|.. --+.++++++-+....|++- ..|+..+.
T Consensus 460 --------------------------------------------EDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIy 493 (898)
T COG5240 460 --------------------------------------------EDCE--YHQITVRILGILGREGPRAKTPGKYVRHIY 493 (898)
T ss_pred --------------------------------------------hhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHH
Confidence 1110 11223334444443333211 12333332
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhh-hhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l-~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2612)
+. +-=.+..+|.+|..||..+.-...+.+. ..+...|.++++|.|.++|-.+...+..+
T Consensus 494 NR----~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 494 NR----LILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HH----HHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 22 2224667899999999887755555543 45666777889999999998888777654
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.068 Score=70.32 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=98.7
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhc
Q 000051 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQV 2360 (2612)
Q Consensus 2283 ~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~Ll~~l~~ 2360 (2612)
.+++-+|..+.-+|+.++-.-+.-. ..++|.|++.|.-. .-.+|++..-++|.+ +.+...++.|+|.+-..+.+
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~La----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLA----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC
Confidence 3567788899999999887655433 34566677777664 678999999999999 55667899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCcChHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2361 SDAGIREAILTALKGVLKHAGKSVSSAVKI-RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~-~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
+++-+|...+--|..+++..= ..+.. -++.++... -|.++++|+-+--|+|.+.+.-.+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~----vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGI----VKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhh----hhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhhcCc
Confidence 999999888888888876421 11222 234444444 467899999999999998765443
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.092 Score=71.73 Aligned_cols=636 Identities=16% Similarity=0.186 Sum_probs=309.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhch---------hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGE---------RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~---------~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2612)
..++..+.+.++..|.+...++++++...-. .+...++..+.+.+.|-++-+|..+...+..+......
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-- 392 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-- 392 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC--
Confidence 3445567888889999998888888754311 12335888888888999999999999988888765432
Q ss_pred HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh----------hhhhHHHHHHhccCCCc------chHHH
Q 000051 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA----------IDEIVPTLLHALEDDQT------SDTAL 2022 (2612)
Q Consensus 1959 l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~----------~~~ilp~Ll~~L~~~~~------~~~al 2022 (2612)
.......++......+.|.+.-||.+|++-+..+........ .++.+..+-+.+++... .....
T Consensus 393 p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s 472 (1251)
T KOG0414|consen 393 PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRS 472 (1251)
T ss_pred CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhh
Confidence 123456677777788889999999999998887765433211 12222222212211100 00000
Q ss_pred HHHHHHhh-hc------cccccc---------ccchhhccCCcchhHHHHHHHHHHH----hCCChhhhHhhHHHHHHHh
Q 000051 2023 DGLKQILS-VR------TTAVLP---------HILPKLVHLPLSAFNAHALGALAEV----AGPGLNFHLGTILPALLSA 2082 (2612)
Q Consensus 2023 ~~L~~il~-~~------~~~vlp---------~Lip~L~~~~~~~~~~~al~~La~~----~g~~l~~~l~~il~~Ll~~ 2082 (2612)
.....++. .. ....-. .+-....+.|. ....+..-+-+ -+-.|...+...+|.+.+.
T Consensus 473 ~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~~~~~~s~~~---~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~l 549 (1251)
T KOG0414|consen 473 ENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLLENEVESVPA---ENEIMQLKALVQFLEDAISFSDEMSEAIPIISQL 549 (1251)
T ss_pred hhcccceeechhhhhhhccccccccccchhhhhhhhhhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00 000000 00000000000 00011110000 1334556677788888888
Q ss_pred cCCC-CHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc-hhccHHHHHHHHHH
Q 000051 2083 MGDD-DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIV 2160 (2612)
Q Consensus 2083 L~~~-~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~-~~~~~~~il~~L~~ 2160 (2612)
+... ..+|.+. +..+. .+..++-++...-+..++..+=..+..+|.+...+...++-..+.. -......+.+.|+.
T Consensus 550 l~s~t~teV~E~-Idfl~-~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~ 627 (1251)
T KOG0414|consen 550 LFSKTTTEVKEA-IDFLV-RCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSK 627 (1251)
T ss_pred HhcCChHHHHHH-HHHHH-HHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH
Confidence 7544 4444443 22222 1223454555556666666665556668888888887776544322 21222566777777
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHH--HhhhhhhhhhhcCCcccccCCC---CCcCchhhHHHHH
Q 000051 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI--STSRDKERRKKKGGPILIPGFC---LPKALQPLLPIFL 2235 (2612)
Q Consensus 2161 ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l--~~~~~~~~~~~~~~~~~l~g~~---~p~~l~~ilp~l~ 2235 (2612)
++.|....-+.+--+.++.+... ...-+.++..+.+.. +..+.. ..+..+.. .+-|.. .|.-+..-+..++
T Consensus 628 l~~~~s~~d~~slE~vl~~lv~~--~~Id~~Vi~~Lw~~ftlq~~~~~-~~q~~~sl-~iL~M~s~s~~~Iv~~~~~~lv 703 (1251)
T KOG0414|consen 628 LLIDASIGDLTSLEEVLCELVAR--GYIDAAVINKLWEIFTLQKKGTT-NEQSRGSL-IILGMASRSKPSIVLANLDLLV 703 (1251)
T ss_pred HHhcccccchhhHHHHHHHHHhC--CCccHHHHHHHHHHHHHHhccCc-hhhhccce-eehhhhhccChhhhhhhhHHHH
Confidence 77665433333333344444331 112222222222221 100000 00001110 111110 0111111111111
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcChh---hhhhc----hhhhhHHHHHHhcC---CCC--H-hHHHHHHHHHHHHHHh
Q 000051 2236 QGLISGSAELREQAALGLGELIEVTSEQ---SLKEF----VIPITGPLIRIIGD---RFP--W-QVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~li~~~~~~---~l~p~----v~~i~~pLi~~l~~---~~~--~-~vk~~al~~L~~L~~~ 2302 (2612)
.+.=|.+.....++..++.++.....+ .-.++ -..+.+.|-..+.. +.+ | .+...++.++-.+..
T Consensus 704 -~iglg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~- 781 (1251)
T KOG0414|consen 704 -QIGLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM- 781 (1251)
T ss_pred -HhccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-
Confidence 111234555555555556555433211 00111 11222222222221 111 2 355555665555443
Q ss_pred cCCCccCchHHHHHHHHHH------------hcCCC-----HH---HHHHHHHHHHHHHhcc-CChhHHHHHHHH-----
Q 000051 2303 GGIALKPFLPQLQTTFIKC------------LQDST-----RT---VRSSAALALGKLSALS-TRVDPLVGDLLS----- 2356 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~~~k~------------L~d~~-----~~---vR~~Aa~aLg~L~~~~-~~~~~~l~~Ll~----- 2356 (2612)
.|..+ ..++++...+. ..|++ .. ++..-..+.|..+.-+ -.++.-++..+.
T Consensus 782 ~Pe~l---a~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~ 858 (1251)
T KOG0414|consen 782 LPEVL---ATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIK 858 (1251)
T ss_pred ChHHH---HHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11222221111 11110 11 2222234444442100 011111110000
Q ss_pred ----hhhcCC----------------------HHHHHHHHHHHHHHHHh---cCCCcChHHHHHHHHHHHHhhcC----C
Q 000051 2357 ----SLQVSD----------------------AGIREAILTALKGVLKH---AGKSVSSAVKIRVYSVLKDLVYH----D 2403 (2612)
Q Consensus 2357 ----~l~~~d----------------------~~vr~~~l~AL~~vi~~---~g~~~~~~~~~~i~~~L~~~l~~----~ 2403 (2612)
.-++.+ ...-....+++..+... .|. ......+.+++.+.+++ .
T Consensus 859 ~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~e~c~n~~~~s 935 (1251)
T KOG0414|consen 859 TELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVVEGCRNPGLFS 935 (1251)
T ss_pred HHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHhcCCCcCC
Confidence 000000 00012344445444433 121 23455666667777743 5
Q ss_pred CHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhc
Q 000051 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLK 2482 (2612)
Q Consensus 2404 ~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~ 2482 (2612)
++..+.+|.-+||++.-.-. +-...-++-+... -.+++..+|.+++.+++-+.-..|.. .+...+.+...+.
T Consensus 936 dp~Lq~AAtLaL~klM~iSa-~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl------ie~~T~~Ly~rL~ 1008 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL------IEPWTEHLYRRLR 1008 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc------cchhhHHHHHHhc
Confidence 78999999999999874322 2112222222222 13677778988999998887776654 3455677888889
Q ss_pred cCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH
Q 000051 2483 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2612)
Q Consensus 2483 ~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2612)
|.++.+|++|+..+..++....- .....+..+..++.|++..+|-.|-.-.+-++++. +.|-..|+.
T Consensus 1009 D~~~~vRkta~lvlshLILndmi-------KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPd 1075 (1251)
T KOG0414|consen 1009 DESPSVRKTALLVLSHLILNDMI-------KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPD 1075 (1251)
T ss_pred CccHHHHHHHHHHHHHHHHhhhh-------HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchH
Confidence 99999999999999999886542 23456788888999999999999999999999876 444444433
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.071 Score=68.90 Aligned_cols=338 Identities=15% Similarity=0.141 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhhhCcchhhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc--ccchhhHH-HHHHHHH
Q 000051 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVI-QMLPLLL 1426 (2612)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~-------~~~~~~~R~~Al~al~~L~~~~~--~~~~~~v~-~ilp~ll 1426 (2612)
+|+..+-......+...+. ++++++...+. +-++++..++|+..+..+..... ..+...+. -++++++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 4555566666666666665 78888887772 12367788899999998887322 33333333 3678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhh--CchhhhhhhchhHHH
Q 000051 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPK 1503 (2612)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~--~p~~l~~~L~~ivp~ 1503 (2612)
+.+.++.-..|..+++.+..+...+++.++ ........+.+.+..-.++..|..++.-+..+ ....++.+.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 999999999999999999888777776654 56666667778887778888888888777754 334577888999999
Q ss_pred HhhhhcCCCHHHHHHHHHHH-HHHHhhcCC--hhH-hhHHHHHHhh----cCCCC---hhHH----HHHHHHHhc-cccc
Q 000051 1504 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMG----LTDPN---DHTK----YSLDILLQT-TFVN 1567 (2612)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~ivp~Ll~~----l~d~~---~~~r----~al~~L~~~-~~~~ 1567 (2612)
++.+-++-+.++-..+.+.+ +.+.+.++. +++ ..++..+++. +.+++ ..+. .|...|..+ +.+-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 98888877777666655543 455544431 122 3344433332 22221 1111 121111110 1111
Q ss_pred cCC------hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCH-HHHHHHH
Q 000051 1568 TVD------APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2612)
Q Consensus 1568 ~i~------~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~-~VR~~A~ 1640 (2612)
... ...-..+.|.+.=.+++.-.+.-+.|++++.+..-.. +++.|....+...+.+++.++.. .--+.+.
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 1122334455444555555677788888887643321 34555555666666666666542 4455666
Q ss_pred HHHHHHHhhhCCC------CchhhHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhChhhHHhHhH
Q 000051 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2612)
Q Consensus 1641 ~aL~~L~~~~g~~------~~~~ll~~L~~~L~~~~~-~~~R~~aa~~L~~i~~~~g~~~l~~llp 1699 (2612)
-++..+...-+.+ |..-+.......+.++.. -.++.++++-+-.++-.++.+-+++.+|
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~p 769 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLP 769 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhH
Confidence 6666666543322 222233333344444332 1344444444444444444443333333
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0028 Score=82.77 Aligned_cols=435 Identities=17% Similarity=0.187 Sum_probs=233.9
Q ss_pred hhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcchH-hHHHHHHHhcCCCCHHHHHHHHhhhHHhHhh
Q 000051 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2612)
Q Consensus 1252 ~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~-~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~ 1330 (2612)
+..++|-+-++.... +-+.+.-+..++...| +..|... ..+..++.-..++++.+|..|.+.++.+ .
T Consensus 47 vSslF~dvvk~~~T~------dlelKKlvyLYl~nYa----~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--~ 114 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTR------DLELKKLVYLYLMNYA----KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--R 114 (734)
T ss_pred hHhhhHHHHhhcccC------CchHHHHHHHHHHHhh----ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--e
Confidence 455555555544431 1233444444444333 3344432 2467788888999999999887765432 1
Q ss_pred hcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000051 1331 MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2612)
Q Consensus 1331 ~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~ 1410 (2612)
++.-...+.+.+...+. +++.-+|+.++.+.+.+-. .++.......+++.|++++.|. ++.+-..|+-++..+.+.-
T Consensus 115 v~~i~ey~~~Pl~~~l~-d~~~yvRktaa~~vakl~~-~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLK-DDDPYVRKTAAVCVAKLFD-IDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhc-CChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhC
Confidence 11112344555555554 3445689999988876653 3334444457899999999977 7889989999999998866
Q ss_pred ccc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh
Q 000051 1411 GRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1411 ~~~-~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~ 1487 (2612)
+.. .......++..++..+.+-+.--+ ...+..+....++. ....++..+...|.+.+..+-.++..++.....
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 531 112223445555555443322222 22333333333332 234455555556666666666666666655554
Q ss_pred hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000051 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2612)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2612)
..++.....+..+-|.++-++. ..++++-.|.+-+.-+....++ .+..-+..+ |+.
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls-~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~F----------------------f~k 324 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLS-SESEIQYVALRNINLILQKRPE-ILKVEIKVF----------------------FCK 324 (734)
T ss_pred HHHHHHHHHHHHhcccceeeec-ccchhhHHHHhhHHHHHHhChH-HHHhHhHee----------------------eee
Confidence 3333223334455555554443 3447777766666655543321 111111111 112
Q ss_pred cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1568 ~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
+.++- -++..-.+++..++.. ..+++++..+.....+-+.+.-..+.+|+|.++
T Consensus 325 ynDPi------------------YvK~eKleil~~la~~--------~nl~qvl~El~eYatevD~~fvrkaIraig~~a 378 (734)
T KOG1061|consen 325 YNDPI------------------YVKLEKLEILIELAND--------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLA 378 (734)
T ss_pred cCCch------------------hhHHHHHHHHHHHhhH--------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhh
Confidence 21111 1122222333333221 123345555555555666677777788888887
Q ss_pred hhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhh
Q 000051 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1648 ~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~ 1726 (2612)
....+. .+.++.+++.++...++ +...+...+-.+.+.+...+ +.+++.+-....+ .+|+.|.+.+++++..+..
T Consensus 379 ik~e~~--~~cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 379 IKAEQS--NDCVSILLELLETKVDY-VVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred hhhhhh--hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 766554 66777777776644433 22233333444444443322 4444444333333 4677788888888888777
Q ss_pred hccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000051 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2612)
Q Consensus 1727 ~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~ 1763 (2612)
+.+ ...++..+++...|+...|+-.-+.+.-.
T Consensus 455 i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 455 IEN-----ALELLESFLENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred cCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 765 24466677777777777666555544433
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.1e-05 Score=100.58 Aligned_cols=348 Identities=18% Similarity=0.205 Sum_probs=222.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh--hCchhhhhh
Q 000051 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQC 1496 (2612)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~--~~p~~l~~~ 1496 (2612)
..+++....++..+....|+...+++..+.. ....+..+..+...+.-.....-.+++..+..+.. +.|......
T Consensus 62 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~---~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~ 138 (815)
T KOG1820|consen 62 IQLLSFGLKCLDSKRVNIRDTKTQSLLRIGK---LEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKA 138 (815)
T ss_pred eeeccchhhhcccccccccCcchhHHHHHHH---hhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccc
Confidence 4566677777777777777777666666611 11234444444444443333333444555554443 344433222
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH----h----hHHHHHHhh----------------------c
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI----A----SLVPTLLMG----------------------L 1546 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i----~----~ivp~Ll~~----------------------l 1546 (2612)
+...++.+. +..||..+.+.+..+.+..++... . .++..+-.. -
T Consensus 139 ~~~~~~~l~------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (815)
T KOG1820|consen 139 FIKHVGSLA------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDE 212 (815)
T ss_pred ccccCcccc------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccc
Confidence 222222222 467888888888888877664210 0 111111110 0
Q ss_pred CCCChhHH-H----HHHHHHhccccccCC-------hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcch
Q 000051 1547 TDPNDHTK-Y----SLDILLQTTFVNTVD-------APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2612)
Q Consensus 1547 ~d~~~~~r-~----al~~L~~~~~~~~i~-------~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2612)
.+|+...+ . .++. ....+....+ ...+..+.+.+...+.++.|..|..|...+...+.... .....
T Consensus 213 ~~~n~~e~~~~~~~~~~~-~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~ 290 (815)
T KOG1820|consen 213 SDPNVKEQLEKPERGLQR-SKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVK 290 (815)
T ss_pred cCCChhhccccccccccc-ccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-ccccc
Confidence 11111110 0 0000 0001111111 13456677788888999999999999998888776433 12345
Q ss_pred hhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh
Q 000051 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2612)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2612)
.|...+...+...+.|.+-.|-..++.+|..++..++.. +...+.|.+++.+++.. ...|.....++..++. .
T Consensus 291 ~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk-~~l~d~l~~~~d~~~n---s 366 (815)
T KOG1820|consen 291 GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKK-SELRDALLKALDAILN---S 366 (815)
T ss_pred CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhcc-HHHHHHHHHHHHHHHh---c
Confidence 677777777788888999999999999999999999865 44566777788776544 3355444444544444 2
Q ss_pred hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc--chhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000051 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1692 ~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~--~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~ 1769 (2612)
..+..+.+.++..+.+.++..|..+..+|.......+. .+..-+..++|.+.....|.+.+||.+|.+++..+++.+|
T Consensus 367 ~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 367 TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 24567788889999999999999999999998888873 3445578899999999999999999999999999999999
Q ss_pred hchhhhhHHHHh
Q 000051 1770 TTSLPLLLPAVE 1781 (2612)
Q Consensus 1770 ~~~i~~llp~L~ 1781 (2612)
...+..++..+.
T Consensus 447 e~~~~k~L~~~~ 458 (815)
T KOG1820|consen 447 EEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHhhc
Confidence 987776665554
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=80.07 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh---hHhhHHHHHHhhcCCCC
Q 000051 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2612)
Q Consensus 1474 ~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ivp~Ll~~l~d~~ 1550 (2612)
.|++++..|.+++...++.+..+++.|+|.++.+++|++++||..|+++|.++++..++. ++..+++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 588999999999998888899999999999999999999999999999999999988753 45788888999999998
Q ss_pred hhHHHHHHHH
Q 000051 1551 DHTKYSLDIL 1560 (2612)
Q Consensus 1551 ~~~r~al~~L 1560 (2612)
..+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888655433
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0096 Score=72.46 Aligned_cols=488 Identities=14% Similarity=0.111 Sum_probs=241.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhch----hhhhHHH---------HhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc-
Q 000051 1751 ESVRDAALGAGHVLVEHYATTS----LPLLLPA---------VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE- 1816 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~----i~~llp~---------L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~- 1816 (2612)
..||..|+..+...++.+..+. ...++|. +.-++.|.+.|.|.-+++....+++.- |.-+.
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls~ 84 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLSV 84 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHHH
Confidence 4688888888777776554431 1223332 234678999999999999999887531 10000
Q ss_pred -CCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhh-H-HHHHHHHHHHHHHH
Q 000051 1817 -GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-L-KEIMPVLMNTLISS 1893 (2612)
Q Consensus 1817 -~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~-l-~~~l~~ll~~L~~~ 1893 (2612)
.+-.|..+.. +.-.+.-..- + ..+++-.. .-.+....+-...++++..++.+.|-. + ..++-.++..+.+.
T Consensus 85 a~~~~~~~ftp--f~v~~a~si~-~-~~r~l~~~--l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~ 158 (728)
T KOG4535|consen 85 AEDTSDHAFTP--FSVMIACSIR-E-LHRCLLLA--LVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPY 158 (728)
T ss_pred HhccCCcCCCc--hHHHHHHHHH-H-HHHHHHHH--HHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 0000111110 0001110000 0 01111111 124455667788899999999998843 2 23556677778888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhch--h--------------hh-----hhHHHHH------------------------
Q 000051 1894 LASSSSERRQVAGRALGELVRKLGE--R--------------VL-----PSIIPIL------------------------ 1928 (2612)
Q Consensus 1894 L~~~~~~~R~~A~~aL~~lv~~~~~--~--------------~l-----~~llp~L------------------------ 1928 (2612)
+.++++.+|..+...++.++..... + .. +.-...+
T Consensus 159 i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i 238 (728)
T KOG4535|consen 159 IRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLI 238 (728)
T ss_pred hhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCccee
Confidence 8999999999999999988753210 0 00 0000000
Q ss_pred --------------------hhhcCC--CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHH
Q 000051 1929 --------------------SRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986 (2612)
Q Consensus 1929 --------------------~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~ 1986 (2612)
..++.. .-..+|..+...|..+...++ ....|..++...+...+.+.++.+...++
T Consensus 239 ~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~a 316 (728)
T KOG4535|consen 239 RLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHGA 316 (728)
T ss_pred eeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHHH
Confidence 001110 011245555554444333222 23345566667777778899999999999
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcc--cccccccchhhccCCcchhHHHHHHHHHHHh
Q 000051 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT--TAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2612)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~--~~vlp~Lip~L~~~~~~~~~~~al~~La~~~ 2064 (2612)
.++..+....+. ++.|. ...+..-...+..++..++ +.......+.+ ....+.++..+....
T Consensus 317 ~ll~~lg~~lv~----~~~P~-------~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl-----~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 317 KLLEELGTGLIQ----QYKPD-------STKAPDQRAPFWTMMLNGPLPRALYDSEHPTL-----QASACDALSSILPEA 380 (728)
T ss_pred HHHHHHHHHHhh----hcCCC-------cccchhhhccHHHHHccCCChhhhhhhcCCCc-----hhHHHHHHhhcCchh
Confidence 888877554432 11110 0000000011222221110 00001111111 112233444333322
Q ss_pred CCChhhhHhhHHHHHHHhcCCC-CHHHHHHHHHHHHHhhhhcc----cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000051 2065 GPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2612)
Q Consensus 2065 g~~l~~~l~~il~~Ll~~L~~~-~~~vr~~a~~al~~l~~~~~----~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l 2139 (2612)
-..+..--.+..+.+.....|. +.-++.+|..++...+..-+ ...+.+....++..+.|..-.+|.-+++.+|++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 2222222234555555555432 34456666666655444222 123445555666667777788999999999988
Q ss_pred HHhcccc-------hhccHHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhh
Q 000051 2140 YKNSKLY-------LVDEAPNMISTLIVLLS--D-SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2612)
Q Consensus 2140 ~~~~~~~-------~~~~~~~il~~L~~ll~--d-~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2612)
....-.. -.......+..++.+-. + ....|+.++..+|+.+..-.. .+.+.....+. +...
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq-----~i~~~~~~e~~---~~~~- 531 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ-----PIEKPTFAEII---EESI- 531 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH-----HhhhccHHHHH---HHHH-
Confidence 6532211 12233444444444432 2 235799999999998865321 11111111000 0000
Q ss_pred hhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh-hhhhhchhhhhHHHHHHhcCCCCHhH
Q 000051 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQV 2288 (2612)
Q Consensus 2210 ~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~-~~l~p~v~~i~~pLi~~l~~~~~~~v 2288 (2612)
..++. + ....+...+|-+++.++|.+.++-.- -.-.++.+.++..|...+.+..+..+
T Consensus 532 -~~l~~------~--------------v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 532 -QALIS------T--------------VLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred -Hhccc------c--------------eecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 00000 0 01123457889999999999976320 01124445555555555555445555
Q ss_pred HHHHHHHHH
Q 000051 2289 KSAILSTLS 2297 (2612)
Q Consensus 2289 k~~al~~L~ 2297 (2612)
|..|..+|.
T Consensus 591 Ri~AA~aL~ 599 (728)
T KOG4535|consen 591 RIRAAAALS 599 (728)
T ss_pred eehhhhhhc
Confidence 555555544
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.032 Score=71.39 Aligned_cols=249 Identities=19% Similarity=0.201 Sum_probs=145.1
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCccc
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEV 2188 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~ 2188 (2612)
+...+..|.+.+.+.....|..++..+..++... .-.+.+..-...++.++. +.|..+|+.|.+-|-.++..
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~----- 399 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV----- 399 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-----
Confidence 4555666666666666777777777776666431 111222233455566666 77777777777776666543
Q ss_pred cccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhc
Q 000051 2189 QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF 2268 (2612)
Q Consensus 2189 l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~ 2268 (2612)
.....|+.-+++-|.+.+...|+....-++-+.+... ....=|
T Consensus 400 ------------------------------------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA-tDy~Wy 442 (938)
T KOG1077|consen 400 ------------------------------------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA-TDYSWY 442 (938)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCcchh
Confidence 2233445555666666677778877776777776653 344445
Q ss_pred hhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH---Hhc
Q 000051 2269 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL---SAL 2343 (2612)
Q Consensus 2269 v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L---~~~ 2343 (2612)
|+.+. -|+++.++..++++=.-.++.+. -...+++|. ...+...|+.+ ++.+-..++..||.+ ++-
T Consensus 443 VdviL-qLiriagd~vsdeVW~RvvQiVv-----Nnedlq~ya---ak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~ 513 (938)
T KOG1077|consen 443 VDVIL-QLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGYA---AKRLFEYLQKPACHENMVKVGGYILGEFGNLIAD 513 (938)
T ss_pred HHHHH-HHHHHhcccccHHHHHHhheeEe-----cchhhhHHH---HHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcC
Confidence 55443 57888887655544221111100 011122221 22344556665 677778888888887 333
Q ss_pred cCChhH--HHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000051 2344 STRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2612)
Q Consensus 2344 ~~~~~~--~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2612)
.|+..+ .+.-+...+....+..|...+..+-.++... ++..+.++.........-|.+++..+.+-|.
T Consensus 514 ~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 514 DPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred CCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 455544 3455566665555667777777777666543 5667777777776666567777766666543
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.13 Score=66.77 Aligned_cols=287 Identities=21% Similarity=0.232 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhh
Q 000051 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASV 1712 (2612)
Q Consensus 1633 ~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~v 1712 (2612)
......|.-++|-+-...| .++...|.+.|++.+...+|.+++-++|-.. +|... .++...+...+...+.-.
T Consensus 393 ~y~EGGalyAlGLIhA~hG----~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa~-~eiYe~lKevLy~D~Avs 465 (929)
T KOG2062|consen 393 GYKEGGALYALGLIHANHG----RGITDYLLQQLKTAENEVVRHGACLGLGLAG--MGSAN-EEIYEKLKEVLYNDSAVS 465 (929)
T ss_pred CccccchhhhhhccccCcC----ccHHHHHHHHHHhccchhhhhhhhhhccchh--ccccc-HHHHHHHHHHHhccchhh
Confidence 3444567777877655544 4477788888888878889999988776543 33321 223333333333333333
Q ss_pred HhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHH
Q 000051 1713 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1791 (2612)
Q Consensus 1713 R~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~-~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~v 1791 (2612)
-+++-..++.+-.-... .+.+.-++.+..+. ++.+.... ..+-.+ ..|+... ..-|.+.+.+.|++.-.
T Consensus 466 GEAAgi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl-~vGiaL-~~ygrqe--~Ad~lI~el~~dkdpil 535 (929)
T KOG2062|consen 466 GEAAGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGL-AVGIAL-VVYGRQE--DADPLIKELLRDKDPIL 535 (929)
T ss_pred hhHHHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHH-HHhHHH-HHhhhhh--hhHHHHHHHhcCCchhh
Confidence 34443333333221111 23444444444432 23332221 111111 2233221 12233445556666667
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHH-HccCCCHHHHHHHHHHHHH
Q 000051 1792 RQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKT 1870 (2612)
Q Consensus 1792 R~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~-~~~D~~~~VR~aA~~~l~~ 1870 (2612)
|.+.+-.++-- +. |. ..+..+..+.. ..+|.+..||++|+-.++-
T Consensus 536 R~~Gm~t~alA-y~--------------------------------GT-gnnkair~lLh~aVsD~nDDVrRaAVialGF 581 (929)
T KOG2062|consen 536 RYGGMYTLALA-YV--------------------------------GT-GNNKAIRRLLHVAVSDVNDDVRRAAVIALGF 581 (929)
T ss_pred hhhhHHHHHHH-Hh--------------------------------cc-CchhhHHHhhcccccccchHHHHHHHHHhee
Confidence 76654333211 11 11 01122222322 3689999999999999998
Q ss_pred HHhcChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 000051 1871 IVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1871 l~~~~~~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
+.-..|.. .+.++..|. +-|+.+|..++-+||-.|...|.. ..+..|.....|+..-|||++|.+++-
T Consensus 582 Vl~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 582 VLFRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred eEecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 87766653 333344444 568999999999999999877754 445556666678888999999999999
Q ss_pred HHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHH
Q 000051 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2612)
Q Consensus 1950 li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr 1982 (2612)
|+.++.+ .+-+-+..+...+.+.+.|.+++.-
T Consensus 651 Im~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 651 IMIQQTE-QLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred HHHhccc-ccCchHHHHHHHHHHHhhhhhhHHH
Confidence 8877654 3445566777777778887766543
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0016 Score=82.28 Aligned_cols=244 Identities=21% Similarity=0.203 Sum_probs=145.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000051 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2612)
Q Consensus 1738 iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2612)
+...+..+..|.+..||..|.+++-.+-+ +-+.-..+.....+.+.|++..+|.++++++.-+-+..++..
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~------- 269 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL------- 269 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc-------
Confidence 44446677788889999999998766554 222223345555677899999999999999987765543211
Q ss_pred CCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHH-HHHHHHHHHhcC
Q 000051 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLAS 1896 (2612)
Q Consensus 1818 ~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~-~ll~~L~~~L~~ 1896 (2612)
+.+.. + ....+..+..++....|.++.||-.|.+.+|.+-.... +++. ++-+.++..+..
T Consensus 270 --e~e~~--e-----------~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe----e~i~QTLdKKlms~lRR 330 (823)
T KOG2259|consen 270 --ERESE--E-----------EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE----EIIQQTLDKKLMSRLRR 330 (823)
T ss_pred --cchhh--h-----------hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH----HHHHHHHHHHHhhhhhh
Confidence 00000 0 11335677778888899999999999999987755332 2222 222333332210
Q ss_pred -CCHHHHHHHHHHHHHHHHH--hchhh--------hhhHH-----HHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHH
Q 000051 1897 -SSSERRQVAGRALGELVRK--LGERV--------LPSII-----PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960 (2612)
Q Consensus 1897 -~~~~~R~~A~~aL~~lv~~--~~~~~--------l~~ll-----p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~ 1960 (2612)
.....|-.....=|++... .+..+ -..++ ..+..++.|+-.+||.++...++.+..+..+
T Consensus 331 kr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---- 406 (823)
T KOG2259|consen 331 KRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---- 406 (823)
T ss_pred hhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----
Confidence 0000011111111111000 00000 01122 3466778888888888888888887554332
Q ss_pred HhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCC
Q 000051 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2612)
Q Consensus 1961 ~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2612)
|....+..+..+++|...+||..|..++..+..+.. .-++.++.+++.|++..
T Consensus 407 -FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 407 -FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--IREEQLRQILESLEDRS 459 (823)
T ss_pred -cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--ecHHHHHHHHHHHHhcC
Confidence 334556777788888888888888888888876632 33567777777776543
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.045 Score=70.12 Aligned_cols=351 Identities=15% Similarity=0.204 Sum_probs=194.5
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHH
Q 000051 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLL 1425 (2612)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~-~~v~~ilp~l 1425 (2612)
..+++|.++..+...+..++..- .+-.+ .++..+++-+.+. |+...-.|+.+++.+. ++.|. .|..++ |.+
T Consensus 83 Lss~kysEKqIGYl~is~L~n~n-~dl~k--lvin~iknDL~sr-n~~fv~LAL~~I~niG---~re~~ea~~~DI-~Kl 154 (938)
T KOG1077|consen 83 LSSNKYSEKQIGYLFISLLLNEN-SDLMK--LVINSIKNDLSSR-NPTFVCLALHCIANIG---SREMAEAFADDI-PKL 154 (938)
T ss_pred hhcCCccHHHHhHHHHHHHHhcc-hHHHH--HHHHHHHhhhhcC-CcHHHHHHHHHHHhhc---cHhHHHHhhhhh-HHH
Confidence 34556777666666666666542 11111 2344444444444 5555555655555543 33332 233332 322
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHH
Q 000051 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2612)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L 1504 (2612)
+ .-++..+.||+.++-|+-.+....++- ........++..|++.+.++-.++..++..++...|+....+++.-+..|
T Consensus 155 L-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L 233 (938)
T KOG1077|consen 155 L-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRL 233 (938)
T ss_pred H-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHH
Confidence 2 226778899999999998888774433 22456677788889988888888999999998888887777766666555
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcC---CCChhHH--HHHHHHHhccccccCChhhHhhHHH
Q 000051 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT---DPNDHTK--YSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~---d~~~~~r--~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
...........++. .-..+++|.+..-+=.+++..- |+....| ++++.+..
T Consensus 234 ~riv~~~~t~~qdY-------Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn----------------- 289 (938)
T KOG1077|consen 234 SRIVVVVGTSLQDY-------TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILN----------------- 289 (938)
T ss_pred HHHHhhcccchhhc-------eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh-----------------
Confidence 44332111111000 0011223333221111222211 1111111 22222211
Q ss_pred HHHHhhcC----CCH---HHH-HHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000051 1580 IVHRGLRE----RSA---ETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1580 ~L~~~l~d----~s~---~vr-~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g 1651 (2612)
..++ .+. ..+ ....+++. ++..+... ...+...+..|-+.+.+....+|--|.+.+..++.. +
T Consensus 290 ----k~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e---~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~ 360 (938)
T KOG1077|consen 290 ----KAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSE---PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-E 360 (938)
T ss_pred ----ccccCccccchHhhhhHHHHHHHHHH-HHHHcCCc---HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-c
Confidence 1110 000 011 11122222 22222221 223455677777778888899999999988888875 2
Q ss_pred CC--CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1652 EE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1652 ~~--~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
.. ....-.+.++..|+.+.+..+|+.+..-|-.++. .+..+.++..+++.+...++.+|+....-..-+++.+..
T Consensus 361 ~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 361 FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 11 2223355667777766666688887766555443 344567788888888888999999888777888888877
Q ss_pred chhhhHHhHHHHH
Q 000051 1730 QFQNYLQQVLPAI 1742 (2612)
Q Consensus 1730 ~f~p~l~~iip~l 1742 (2612)
++.=|+.-++..+
T Consensus 438 Dy~WyVdviLqLi 450 (938)
T KOG1077|consen 438 DYSWYVDVILQLI 450 (938)
T ss_pred CcchhHHHHHHHH
Confidence 7766665555443
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00036 Score=87.79 Aligned_cols=227 Identities=19% Similarity=0.197 Sum_probs=151.7
Q ss_pred HHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-h--------c
Q 000051 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-T--------T 1771 (2612)
Q Consensus 1701 l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~-~--------~ 1771 (2612)
+...+.+.++.||..+...+-.+.. |-.+. ..+.....+.++|+++.||.+|.+.+...-+.++ + +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--ccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 4445567788999999988888776 32211 2355677788999999999999988876665551 1 1
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHH-------H-----hcC---------------------CcccccccCC
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF-------K-----VAG---------------------TSGKALLEGG 1818 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~-------~-----~~~---------------------~~~~~~~~~~ 1818 (2612)
..+..+..+-..+.|..|.+|..+.+++|.+=. + +.+ .+||.+.++.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 345566677788899999999999999987621 0 000 0011110000
Q ss_pred -CCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCC
Q 000051 1819 -SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2612)
Q Consensus 1819 -~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~ 1897 (2612)
.+++++.. ..+++. | -..++..++.|.-.+||.+|+..++.++.+.|. +....+..|+..++|.
T Consensus 358 psee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 358 PSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDE 422 (823)
T ss_pred chhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccH
Confidence 00000000 001110 0 112233356788889999999999999988775 3445677788889999
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 000051 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1898 ~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
...+|..|..+|..+.... .+....++.+...|.|.++++|.+.-..|+.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999988762 3456777888888889999999887665553
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.35 Score=66.39 Aligned_cols=182 Identities=18% Similarity=0.286 Sum_probs=124.9
Q ss_pred chhhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh
Q 000051 2227 LQPLLPIFLQGLI----SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2227 l~~ilp~l~~~L~----~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~ 2302 (2612)
+..+.|++.++.. .++|+.+.+|..+++.+.--.. . |-..-.+-|+.++....++-+|..+.-++|.++-.
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa-~----fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA-E----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH-H----HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3457788888884 4679999999999999873321 2 22233444678887666788999999999999999
Q ss_pred cCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcC
Q 000051 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2612)
.|..+.||.+ .+...|.|++..||..|...|.+|+-- .-++..+++++.-.+.+++.+++.-+=..++|+-++.
T Consensus 992 fpnlie~~T~----~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~- 1066 (1251)
T KOG0414|consen 992 FPNLIEPWTE----HLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG- 1066 (1251)
T ss_pred cccccchhhH----HHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-
Confidence 8887777654 556789999999999999999999532 2245567899999999999999888777777776553
Q ss_pred CCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
..+ =...+.|+.-|.+. .=..+..+...-.+||.+-+
T Consensus 1067 n~i-ynlLPdil~~Ls~~-~l~~~~~~~vm~~li~~ikk 1103 (1251)
T KOG0414|consen 1067 NTI-YNLLPDILSRLSNG-NLEEESYKTVMEFLIGLIKK 1103 (1251)
T ss_pred cch-hhhchHHHHhhccC-cccchhhHHHHHHHHHHhcc
Confidence 211 12233333332221 11234555555555555443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.017 Score=78.27 Aligned_cols=370 Identities=15% Similarity=0.156 Sum_probs=203.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHh
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKL 1458 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ 1458 (2612)
.+..++... +.-.| .++..+..+++...-...-.-..+++.+..++...+..+.-.+...++.+.-.-... .-..
T Consensus 254 k~~~l~~kQ-eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 254 KLQTLIRKQ-EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHH-HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 344444443 34444 556667777765542222223478899999998888888888888887774321111 2266
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh---hH
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EI 1535 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i 1535 (2612)
++|.|...+.+++-.....++.+|.++++...-.-.-.-.+++|.+..++.|+ ..|..|...|..++..-... ..
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh
Confidence 88999999998888889999999999987533222222246889999999875 45566777777776532211 11
Q ss_pred hhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChh--hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCC-
Q 000051 1536 ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP- 1610 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~i~~~--~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~- 1610 (2612)
...+|.+.+.+. .++..+. +.+..++..........- .-..+-..+.+.++.+++ .....+.|++..-+..
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLK 485 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHH
Confidence 346777777653 3444433 222222211000000000 001111122233333332 2345677776642111
Q ss_pred CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----Cc--hhhHHHHHHHhccCCC-HHHHHHHHHHH
Q 000051 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNS-NVERSGAAQGL 1682 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-----~~--~~ll~~L~~~L~~~~~-~~~R~~aa~~L 1682 (2612)
..+.+|+..++ ..+...+ -......|+|.++...-++ .+ ..++|++.+.|..... ......+...+
T Consensus 486 ~~f~~~i~~L~----~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 486 ELFVDFIGDLA----KIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILL 559 (708)
T ss_pred HHHHHHHHHHH----HHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 12344444333 3343332 2356777777777643222 12 3688999998875532 22444555556
Q ss_pred HHHHHHhChhh-H--HhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHH
Q 000051 1683 SEVLAALGTVY-F--EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRD 1755 (2612)
Q Consensus 1683 ~~i~~~~g~~~-l--~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~ 1755 (2612)
|.++..-.... + ..+++.++..+.+. +.+.--..+.+|..+... +......+ ..+...++..+.|.+..||.
T Consensus 560 gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~ 638 (708)
T PF05804_consen 560 GTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRK 638 (708)
T ss_pred HHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence 65543211111 1 35666666666543 444444445555555443 22111111 34777888999999999999
Q ss_pred HHHHHHHHHHH
Q 000051 1756 AALGAGHVLVE 1766 (2612)
Q Consensus 1756 ~Al~al~~lv~ 1766 (2612)
.|-.++..+.+
T Consensus 639 ~~d~~Ldii~e 649 (708)
T PF05804_consen 639 VCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHH
Confidence 99888876554
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00076 Score=82.48 Aligned_cols=198 Identities=19% Similarity=0.158 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~ 1412 (2612)
...++..++..+...+....|.+|...|-.+...-+..... ...++..+.+.+.+..+...|..|+..++.+++.-+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 35567777777776666778888888777666543322221 1256666777787755888999999999999998888
Q ss_pred cchhhHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc-
Q 000051 1413 LFEPYVIQMLPLLLVAFSDQVVA-VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2612)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p- 1490 (2612)
.|..+....+..++.+-.|.++. +|.++..|+..+.+..+-..+..+-|.++. .+...-..++..+-.+.+..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 89999999999999999998765 566667778888888888888888887766 233333445556677776544
Q ss_pred hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHh
Q 000051 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2612)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2612)
+.+...++++.|.+++..+.+...||+.|+.||..+...++..++.
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~me 485 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEME 485 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence 4577788999999999999999999999999999999888744433
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.28 Score=63.75 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=102.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH-hcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHH
Q 000051 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQL 2314 (2612)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~-l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL 2314 (2612)
+.+.+.++-.|...+.+++----.+|. . ..+..|+.+ ++|. +.+||.+|..+||-++-+- |..
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgn--n-----kair~lLh~aVsD~-nDDVrRaAVialGFVl~~d--------p~~ 589 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGN--N-----KAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRD--------PEQ 589 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCc--h-----hhHHHhhccccccc-chHHHHHHHHHheeeEecC--------hhh
Confidence 344556778888877776654444442 1 122223444 4554 8899999999999776543 445
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHH
Q 000051 2315 QTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 2393 (2612)
Q Consensus 2315 ~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~ 2393 (2612)
.+..+..|+++ |+.||..||.+||......+. ..-+.-|=....++..=||+.++-|+.-|.-...+... +-...+.
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~-pkv~~fr 667 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC-PKVNGFR 667 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC-chHHHHH
Confidence 55666778887 999999999999987553332 22222222233455567999999999998876655443 3445556
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHH
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILG 2416 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2612)
..+.+.+.+.+++.-.....+|+
T Consensus 668 k~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 668 KQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Confidence 66667777766655443444443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0032 Score=80.64 Aligned_cols=239 Identities=18% Similarity=0.145 Sum_probs=152.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
.++.+...+....+..++..+..++... -+ + ..+..++..+.|.++.||..+..+++.+ .-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~----~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------~~~~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---ED----A---LDLRSVLAVLQAGPEGLCAGIQAALGWL-------GGRQ 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---CC----h---HHHHHHHHHhcCCCHHHHHHHHHHHhcC-------CchH
Confidence 4555666664333566665554433221 11 1 2377788899999999999999998765 2345
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhH
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2612)
..+.|+..|.+.+..+|..++.+++..- ..-.+.+...++|.++.||..|+.+|+.+... ..
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a 179 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-------LS 179 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cc
Confidence 5677788888889999988887777522 12245677788899999999999999988753 34
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1539 vp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
+|.|...+.|++..+| .|+..+... +. ....+.+.....+.....+..+..++... +.
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~l------G~---~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~-------- 238 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLA------GS---RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG-------- 238 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHc------CC---HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------
Confidence 5667777888888888 455555431 11 11223334333444444444444444432 22
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000051 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i 1685 (2612)
+..++.|..++.++. +|..++.++|.+.. +..++.|++.+.++. .+..+.+++..|
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 246777788887754 89999999887543 456777777665442 555555555444
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0024 Score=81.83 Aligned_cols=242 Identities=18% Similarity=0.082 Sum_probs=145.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~ 1417 (2612)
.++.++..|...++...+..++.++...- ....++.+.+.+.+. +..+|.++..+++.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~---------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE---------DALDLRSVLAVLQAG-PEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC---------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC----------
Confidence 44455555544444444444444432110 012355666666666 5667777777666432
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000051 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2612)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L 1497 (2612)
-....+.++..++++++.||.++..++...- ..-.+.+...|++.+..+|..++.+||.+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---------- 176 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDPGPALEAALTHEDALVRAAALRALGELPR---------- 176 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence 1244566666777778888877665554421 1223456666677777888888888877643
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhH
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~i 1577 (2612)
...+|.|...+.|.++.||.+|..++..++. + .-++.+.....++....+..+...... .+. ...
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal-----~~~---~~a 241 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAV-----AGG---PDA 241 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHh-----CCc---hhH
Confidence 3345566778999999999999999988764 1 223344443334443333222111110 011 145
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1578 ip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
++.|...++++ .+|..+..++|.+. ++ ..++.+...+.|+. ++..|..++..+..
T Consensus 242 ~~~L~~ll~d~--~vr~~a~~AlG~lg----~p--------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 242 QAWLRELLQAA--ATRREALRAVGLVG----DV--------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHhcCh--hhHHHHHHHHHHcC----Cc--------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 66777777775 48999999998764 32 26777888887753 99999999988765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.002 Score=82.66 Aligned_cols=235 Identities=25% Similarity=0.280 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC
Q 000051 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2612)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~ 1430 (2612)
++..|..+++.++.+-. ...++.+...+.+. ++.+|..|..+++.+.. ...+|.++..+.
T Consensus 56 ~~~vr~~aa~~l~~~~~---------~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~ 115 (335)
T COG1413 56 DLLVRLSAAVALGELGS---------EEAVPLLRELLSDE-DPRVRDAAADALGELGD----------PEAVPPLVELLE 115 (335)
T ss_pred CHHHHHHHHHHHhhhch---------HHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC----------hhHHHHHHHHHH
Confidence 45566666655332221 13445555555555 45666666554433211 133444444444
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcC------------CChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000051 1431 -DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED------------KAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2612)
Q Consensus 1431 -D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~------------~~w~~r~~a~~~L~~ia~~~p~~l~~~L 1497 (2612)
|++..||..+..++..+-. ...++.+++.+++ ..|..|..+...++.+..
T Consensus 116 ~d~~~~vR~~aa~aL~~~~~-------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---------- 178 (335)
T COG1413 116 NDENEGVRAAAARALGKLGD-------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---------- 178 (335)
T ss_pred cCCcHhHHHHHHHHHHhcCc-------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------
Confidence 5666666666666555521 1223334444433 225667777777776543
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhh
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLAL 1576 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~ 1576 (2612)
+..++.+.+.+.|....||.+|..+|+.++... ..+.+.+...+.|++..+| .++..++.. ....
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~---------~~~~ 244 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI---------GDEE 244 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc---------Ccch
Confidence 445567788899999999999999999988642 3556777777888887777 455555431 1123
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
..+.+..++.+.++.++..+....+.. . .......+...+.|..+.+|..+..+++....
T Consensus 245 ~~~~l~~~l~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 245 AVDALAKALEDEDVILALLAAAALGAL-----D-------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHHhccchHHHHHHHHHhccc-----C-------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 455666666666666666655544411 0 11133444555667777778777777776544
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.018 Score=71.55 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=106.0
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhchh-hh
Q 000051 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGER-VL 1921 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~-~~~~R~~A~~aL~~lv~~~~~~-~l 1921 (2612)
.++..+.....|++..+|..|+..++..+...|...+.+.+.++..++..|-|. +.++...+..+|..+....... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 345555556789999999999999999999999999999999999998888754 5788888899998888776443 55
Q ss_pred hhHHHHHh---hhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH---HHhcCCcHHHHHH
Q 000051 1922 PSIIPILS---RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR---TALCDSILEVRES 1984 (2612)
Q Consensus 1922 ~~llp~L~---~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~---~~L~D~d~~Vr~~ 1984 (2612)
+.++++-. ....+.+++.|.++...+|.+....++..-..|.+++...+. -.+.|+++.|-.+
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH
Confidence 56666543 456788999999999999998777776544444444443332 3567888876543
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0062 Score=78.15 Aligned_cols=184 Identities=26% Similarity=0.325 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhch
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ 1499 (2612)
...+.++..+.|++..+|..+...++.+ +-+..+|.+...+.+.++.+|..++.+|+.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4677788889999999999887775444 557889999999999999999999998887642 45
Q ss_pred hHHHHhhhhc-CCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCC------------hhHH-HHHHHHHhccc
Q 000051 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2612)
Q Consensus 1500 ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~------------~~~r-~al~~L~~~~~ 1565 (2612)
.+|.+.+++. |.+..||..|..+|+.+...- -++.++..+.|+. ..+| .+...++..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5667777777 799999999999999887532 2444555555543 1233 233333220
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2612)
......+.+.+.+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..+..++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234556667777777778888877777765421 2356677777778888888887777765
Q ss_pred H
Q 000051 1646 L 1646 (2612)
Q Consensus 1646 L 1646 (2612)
+
T Consensus 240 ~ 240 (335)
T COG1413 240 I 240 (335)
T ss_pred c
Confidence 4
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.16 Score=66.66 Aligned_cols=314 Identities=15% Similarity=0.137 Sum_probs=159.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHH
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2612)
.+.+..+++ |.-.|...-.+++.++.... -+.-+...+.+-++..++..|-.|..++-.+....--+++..++.
T Consensus 68 ~~tKlfQsk-d~~LRr~vYl~Ikels~ise-----dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~k 141 (865)
T KOG1078|consen 68 AITKLFQSK-DVSLRRMVYLAIKELSKISE-----DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMK 141 (865)
T ss_pred HHHHHHhhc-CHHHHHHHHHHHhhccccch-----hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 345555665 55566655555555443221 122334444444555566777776666655544433334444443
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHh--hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHH
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~iv 1539 (2612)
..+ -+....... ..++..+.. ...+........+.+ ...+.+..||..|..-|.++.+.-+ -.+..++
T Consensus 142 qai---vd~~~avSs--aalvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalglLyqirk~dr-la~sklv 211 (865)
T KOG1078|consen 142 QAI---VDKNPAVSS--AALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLV 211 (865)
T ss_pred hHe---eccccccch--HHHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHH
Confidence 322 222221111 112222221 223333333333332 2333355677777776666654211 0112222
Q ss_pred HHHHh-hcCCCChh---HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh
Q 000051 1540 PTLLM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2612)
Q Consensus 1540 p~Ll~-~l~d~~~~---~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2612)
..+.. .+.+|-.. +|.+.+.+-. . ......+.|.+.+.+.+....+-..|+..+..+... .+.++.|
T Consensus 212 ~~~~~~~~~~~~A~~~lir~~~~~l~~------~-~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p 282 (865)
T KOG1078|consen 212 QKFTRGSLKSPLAVCMLIRIASELLKE------N-QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP 282 (865)
T ss_pred HHHccccccchhHHHHHHHHHHHHhhh------c-ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch
Confidence 22222 12222111 1211111111 1 233445778888888888888888888888877653 2234444
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHH
Q 000051 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2612)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2612)
.+..+.-.+..+.+.+|-+|.+.|..++...+.... ..=.. ++.+-++. .|.-+.-++..+++.......+
T Consensus 283 ----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~cN~e-lE~lItd~---NrsIat~AITtLLKTG~e~sv~ 353 (865)
T KOG1078|consen 283 ----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VCNLD-LESLITDS---NRSIATLAITTLLKTGTESSVD 353 (865)
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-ccchh-HHhhhccc---ccchhHHHHHHHHHhcchhHHH
Confidence 566677778899999999999999999887654310 00001 12222222 4566666677777665555556
Q ss_pred hHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1696 ~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
.++..+-....+-+.+.+-....++..++..++.
T Consensus 354 rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 354 RLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred HHHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 6666655555554555554555555555555543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.46 Score=64.27 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=117.4
Q ss_pred hcCCChhhHHHHHHH-HHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhh
Q 000051 1467 LEDKAWRTKQSSVQL-LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2612)
Q Consensus 1467 L~~~~w~~r~~a~~~-L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~ 1545 (2612)
+.+++...|..|+.- +..|..+.. ++.++|.+++.....+.++++..--=|..+++.-+ .+.--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 555555666666554 455554432 45566666666666688999988888888887543 2334567888889
Q ss_pred cCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhh-hHHH
Q 000051 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2612)
Q Consensus 1546 l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~-ll~~ 1623 (2612)
++||++.+| .|+..+.... ....+..+++.+.+.++|+++.||+.|+.++..+.+. ++ ++ |.+. ....
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~-~l--~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DK-DL--YHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CH-hh--hhcccHHHH
Confidence 999999999 5777665311 2345567889999999999999999999999998875 21 11 2233 5666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1624 L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
+..++.|.+|.|-..|..++..+-..
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77778899999999988888777554
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.096 Score=67.86 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC-
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK- 1933 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~- 1933 (2612)
|.+..-|+.-++.++..+.++|. +...+++.++++++|.++..-......+.+.+++++. ....++..+.+.+.
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETFPQ 444 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhhhh
Confidence 33445666677777777777764 4566777888889999987777777777777776543 22233333333222
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 000051 1934 DPSASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~ 1952 (2612)
-....+-.++++.+|+-+.
T Consensus 445 irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 445 IRSSKICRGALWILGEYCE 463 (948)
T ss_pred hcccccchhHHHHHHHHHh
Confidence 1344555677777777543
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0088 Score=74.07 Aligned_cols=232 Identities=18% Similarity=0.214 Sum_probs=152.2
Q ss_pred cchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc
Q 000051 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2612)
Q Consensus 1296 ~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2612)
+-+..++..+..-..||+..+|..++.+|+......+++. ...++.++..|.+..+..+-..+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 5577888888888999999999999999998876654433 456677777777777778888999999988876554
Q ss_pred chhhhh--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH----HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000051 1372 SSLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI----QMLPLLLVAFSDQVVAVREAAECAAR 1445 (2612)
Q Consensus 1372 ~~l~~~--~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~----~ilp~ll~~l~D~~~~VR~aa~~al~ 1445 (2612)
..+..+ ++.-.+..+..+. ++..|.+|..+|+.++...|+..+.+.. +-+..++-.+.|++|.|-.|+...++
T Consensus 334 ~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred cchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 444322 4555666777776 6889999999999999988865544332 22334555678999999888877776
Q ss_pred HHHHhhcHHhHHhHHH--------------------------HHHhhh-------cCCCh-hhHHHHHHHHHHHHhhCch
Q 000051 1446 AMMSQLSAQGVKLVLP--------------------------SLLKGL-------EDKAW-RTKQSSVQLLGAMAYCAPQ 1491 (2612)
Q Consensus 1446 ~i~~~l~~~~v~~ilp--------------------------~Ll~~L-------~~~~w-~~r~~a~~~L~~ia~~~p~ 1491 (2612)
.+...+.-+....+++ .++..+ -+..| .+|.++...-+........
T Consensus 413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~ 492 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR 492 (533)
T ss_pred hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence 6655433322222222 222111 13467 3444444433433332211
Q ss_pred hhhhh--hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1492 QLSQC--LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1492 ~l~~~--L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
+.-.+ ...+...+-.+..|+-++|+..|.+|++.+..
T Consensus 493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 11111 23445566667789999999999999887653
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.8e-05 Score=67.23 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1472 w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
|++|.+|+.+||.++...++.+..+++.++|.|..+|+|+++.||.+|+.||+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
|
... |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.82 Score=62.00 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=86.5
Q ss_pred cCCCHHHHHHHHH-HHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1854 SDVSLSVRQAALH-VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~-~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
...+...|..|++ ++..+.. |. .++.+++.+++...+.+.+.+....-=+-...+.- +.-.-..++.+.+-+
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~--G~----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~~~lLavNti~kDl 101 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSL--GE----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-PELALLAVNTIQKDL 101 (757)
T ss_pred cccChHHHHHHHHHHHHHHhc--CC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhc
Confidence 3334444544444 4444443 22 25666666777777777777766555444433322 222334556777788
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~ 1994 (2612)
.|+++.+|..|+..++.+ ...+.++.+++.+++++.|+++.||..|+-|+..+.+
T Consensus 102 ~d~N~~iR~~AlR~ls~l-------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 102 QDPNEEIRGFALRTLSLL-------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred cCCCHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 999999999999888765 2345678899999999999999999999999998875
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.18 Score=66.14 Aligned_cols=298 Identities=17% Similarity=0.144 Sum_probs=174.3
Q ss_pred hhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q 000051 1288 AKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK 1367 (2612)
Q Consensus 1288 a~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~ 1367 (2612)
++.++........+++.+-..+++..+.|...++.++-.+-......... ....++.+.++.+...|..|.+.|..++.
T Consensus 233 ~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 233 SELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34444444445667788888899999999998888775543222222222 23456666777778999999999999998
Q ss_pred hhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000051 1368 GFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2612)
Q Consensus 1368 ~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2612)
..+..... .-.-|..++.+. .|--|..++..+...-.. ..+..++..+-..+.|-+..-.....++++.+
T Consensus 312 ~~P~~v~~---cN~elE~lItd~----NrsIat~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFKivvvdai~sL 381 (865)
T KOG1078|consen 312 KHPQAVTV---CNLDLESLITDS----NRSIATLAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSL 381 (865)
T ss_pred hCCccccc---cchhHHhhhccc----ccchhHHHHHHHHHhcch---hHHHHHHHHHHHHHHhccccceEEeHHHHHHH
Confidence 77654332 122355556554 255677788777765432 33334444443333333333333344455555
Q ss_pred HHhhcHHhHHhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1448 MSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1448 ~~~l~~~~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
...++.. ...+++.|...|. +.....|++.++++..+++..|++-..-+.. |+....|. +-+.-+.+-|+.+
T Consensus 382 c~~fp~k-~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~----LCefIEDc--e~~~i~~rILhlL 454 (865)
T KOG1078|consen 382 CLKFPRK-HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEH----LCEFIEDC--EFTQIAVRILHLL 454 (865)
T ss_pred HhhccHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHH----HHHHHHhc--cchHHHHHHHHHH
Confidence 4444433 2334444444443 4556778888888888877666543322222 33334442 3345566666666
Q ss_pred HhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1527 GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1527 ~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
+...+. ..+|+.++|.-++.+ -=.+..+|..|..++..++.
T Consensus 455 G~EgP~-------------a~~Pskyir~iyNRv-------------------------iLEn~ivRaaAv~alaKfg~- 495 (865)
T KOG1078|consen 455 GKEGPK-------------APNPSKYIRFIYNRV-------------------------ILENAIVRAAAVSALAKFGA- 495 (865)
T ss_pred hccCCC-------------CCCcchhhHHHhhhh-------------------------hhhhhhhHHHHHHHHHHHhc-
Confidence 654431 123444444222111 01245789999999988872
Q ss_pred cCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
+++ . ..+.+...+..++.|.+.+||..|.-.+..+-
T Consensus 496 -~~~-~---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 496 -QDV-V---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCC-C---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 231 2 23457777888999999999999998888776
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.39 Score=65.50 Aligned_cols=160 Identities=20% Similarity=0.263 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChh-H--hhHHHHHHhhcCCCC
Q 000051 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-I--ASLVPTLLMGLTDPN 1550 (2612)
Q Consensus 1474 ~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i--~~ivp~Ll~~l~d~~ 1550 (2612)
.-+.++.+|.++++...-.....-..+++.|+++|+..+.++.-.+...|..++-.-.|.. + ..++|.|.+.+..++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 3446778889998876555444557899999999999899999999999999886544432 2 578999999998776
Q ss_pred hhHH-HHHHHHHhccccccCChhhH-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHh
Q 000051 1551 DHTK-YSLDILLQTTFVNTVDAPSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2612)
Q Consensus 1551 ~~~r-~al~~L~~~~~~~~i~~~~l-~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2612)
.... .++..|...+|.......-. ..++|.+...+.++ ..+..+..++.+++.. .+.+.+..|.+ .+|.+.+.+
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d-d~~r~~f~~Td-cIp~L~~~L 420 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD-DEARSMFAYTD-CIPQLMQML 420 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC-HhhHHHHhhcc-hHHHHHHHH
Confidence 5544 57777776555544322211 24677788777765 3455677777776642 12223333333 455555544
Q ss_pred c-CCCHHHHH
Q 000051 1629 V-DPIPEVRS 1637 (2612)
Q Consensus 1629 ~-d~~~~VR~ 1637 (2612)
. .+.+.+..
T Consensus 421 l~~~~~~v~~ 430 (708)
T PF05804_consen 421 LENSEEEVQL 430 (708)
T ss_pred HhCCCccccH
Confidence 3 34444443
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0048 Score=75.75 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=141.4
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch
Q 000051 2233 IFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 2311 (2612)
Q Consensus 2233 ~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l 2311 (2612)
.+++++.+. ..+.+..|..-|-.+.-.-+-.....|+.+|.--++.++++..+...|..||..|+.+++.-+..+..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 344444433 3445555554333333222223445677888888899999977889999999999999999888888888
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHH
Q 000051 2312 PQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390 (2612)
Q Consensus 2312 pqL~~~~~k~L~d~~-~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~ 2390 (2612)
..-+..++.+-.|.+ +.+|.++-.|+-.+..+.|- .-+.-+...+.+.|...-..+++.+..++........-...+
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 878888888888884 55555555556655555442 123334444444565555667888889988766544446778
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 000051 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2612)
Q Consensus 2391 ~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2612)
.|...+.+..++.+..||..+..||-++...++.+++.|.+..+
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 88888888888889999999999999999999977777777644
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.16 Score=59.38 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHh-chhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH----hHHHHHHHHHhcCCc
Q 000051 1904 VAGRALGELVRKL-GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1978 (2612)
Q Consensus 1904 ~A~~aL~~lv~~~-~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l----~~ll~~l~~~L~D~d 1978 (2612)
....||..+.+.. |....|.+.|.|+.++..++..|+.-+|..++.+++.+....+.+.+ ..+++.+..++..+|
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 3677788877665 44478999999999999999999999999999999988765554433 568888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHH
Q 000051 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALG 2058 (2612)
Q Consensus 1979 ~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~ 2058 (2612)
.+|-.+|.+.+.++... +..++-+.| ++..++.-+..|..-+ -+..+.+.+.
T Consensus 142 deVAkAAiesikrialf--paaleaiFe-------SellDdlhlrnlaakc-------------------ndiaRvRVle 193 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF--PAALEAIFE-------SELLDDLHLRNLAAKC-------------------NDIARVRVLE 193 (524)
T ss_pred HHHHHHHHHHHHHHHhc--HHHHHHhcc-------cccCChHHHhHHHhhh-------------------hhHHHHHHHH
Confidence 99999999988877532 112222221 1111111111111000 0112333443
Q ss_pred HHHHHhCC--Chhhh--HhhHHHHHHHhcCC-CCHHHHHHHHHHHHHhhhhc-cccc--HHHHHHHHHhhc--CCCChhH
Q 000051 2059 ALAEVAGP--GLNFH--LGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVI-DEEG--VESLVSELLKGV--GDNQASI 2128 (2612)
Q Consensus 2059 ~La~~~g~--~l~~~--l~~il~~Ll~~L~~-~~~~vr~~a~~al~~l~~~~-~~~~--l~~ll~~Ll~~l--~~~~~~v 2128 (2612)
-+.+.+.- ....+ -..++..|...+.. ++.-++...++-...+...- +.++ ...+++.+...+ .|.+|--
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 33332211 11111 12355555555643 55555544444333333211 1111 223444444444 2456777
Q ss_pred HHHHHHHHHHHHHhc------ccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 000051 2129 RRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2129 R~~A~~~L~~l~~~~------~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~ 2183 (2612)
+..+....|.|+.+. +...-..++..+...+.++...|++..++|..+++.+..+
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 776777777776432 2233344566666777777788888999999999887654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0055 Score=70.11 Aligned_cols=110 Identities=24% Similarity=0.253 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000051 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2612)
Q Consensus 2242 ~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~ 2321 (2612)
++.+|..+..++|+++.+.+ ..+.||++. +...|.|. ++.||..++.+|..|....-. .+-+++...++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~----l~~~L~D~-~~~VR~~al~~Ls~Li~~d~i---k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPN----LYKCLRDE-DPLVRKTALLVLSHLILEDMI---KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHH----HHHHHCCC-CHHHHHHHHHHHHHHHHcCce---eehhhhhHHHHHH
Confidence 46789999999999998886 566666555 46777886 889999999999999875322 3346777788899
Q ss_pred hcCCCHHHHHHHHHHHHHHHhc-cC-ChhHHHHHHHHhhhc
Q 000051 2322 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 2360 (2612)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~L~~~-~~-~~~~~l~~Ll~~l~~ 2360 (2612)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 366778888887754
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=1.3 Score=59.25 Aligned_cols=265 Identities=17% Similarity=0.220 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCC-----hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhc-
Q 000051 1436 VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT- 1509 (2612)
Q Consensus 1436 VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~- 1509 (2612)
-|+.-.+++-.+.+.+.+.....+...+-+.+.+.+ |..-..++..+..++....... ...+|.+++...
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~----~~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE----STWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch----hHHHHHHHHhccc
Confidence 455555555555555554444444454544554444 7777777777877776544433 334555555442
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhcCC-h-hHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH
Q 000051 1510 ----DTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2612)
Q Consensus 1510 ----D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~ 1583 (2612)
-.++..-..+...+|.++..+++ | ++...+|.|++.+..+
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---------------------------------- 561 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS---------------------------------- 561 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc----------------------------------
Confidence 22666667777777777766653 2 3344444444443222
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----Cchh
Q 000051 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPD 1657 (2612)
Q Consensus 1584 ~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g~~----~~~~ 1657 (2612)
+.-..+...+..+|+. -+.++.||.++++..+.+.+.. -.+..|....+++|.+.....++ |+..
T Consensus 562 -------k~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 562 -------KESEQAISTLKTLCET--CPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred -------hHHHHHHHHHHHHHHh--hhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 2223344447778874 3468999999999999998864 36778999999999999887733 5555
Q ss_pred hHHHHHHHhcc----CC-CH-HHHHHHHH--HHHHHHHHhChh-----------------------hHHhHhHHHHHhcc
Q 000051 1658 LVSWLLDALKS----DN-SN-VERSGAAQ--GLSEVLAALGTV-----------------------YFEHILPDIIRNCS 1706 (2612)
Q Consensus 1658 ll~~L~~~L~~----~~-~~-~~R~~aa~--~L~~i~~~~g~~-----------------------~l~~llp~l~~~~~ 1706 (2612)
++..++..+.. +- .. ..+..+.+ +++.+...+..+ .+.+++|.+-+.+.
T Consensus 633 lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 55555554432 11 12 12222222 244444432111 11233443333322
Q ss_pred --CCChhhHhHHHHHHHHhhhhhccch-hhhHHhHHHHHHhhcC
Q 000051 1707 --HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1707 --~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~~iip~ll~~L~ 1747 (2612)
.....+-++++..++.=....++.| .|+++.+.+-+.+...
T Consensus 713 ~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 1345566666666665566667778 8999999998888544
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.41 Score=62.39 Aligned_cols=426 Identities=17% Similarity=0.185 Sum_probs=205.0
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcchH---
Q 000051 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH--- 1299 (2612)
Q Consensus 1223 ~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~--- 1299 (2612)
+.+...+..++..++.-+...+- .|...-+.+|.++--.+... +.+++.-.. +|-.+....+.+-.-.+
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~ml-nGe~~p~Llm~IiRfvlps~------~~elKKLly-~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALML-NGEDLPSLLMTIIRFVLPSR------NHELKKLLY-YYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHH-cCCCchHHHHHHhheeeccC------chHHHHHHH-HHHHHccccCCCcccHHHHH
Confidence 44556677777655554433322 34443344455544444431 123333333 33344443332221222
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcH
Q 000051 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2612)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i 1379 (2612)
-+.+...+-|.+|++-+|-...+.+..+ ...+-.+.++|.+...|...+. -+|+.|..++..+-+.. ..-+ .+.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELlepl~p~IracleHrhs-YVRrNAilaifsIyk~~-~~L~--pDa 172 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHS-YVRRNAILAIFSIYKNF-EHLI--PDA 172 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcch-hhhhhhheeehhHHhhh-hhhc--CCh
Confidence 2456777888999999988766555433 1112235566666666665554 46888888888777651 1111 133
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhH
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2612)
-+.+...+..+.|+..+..|.+.+-.. -+. .|..-+..+....+..
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~---D~E--------------------------rAl~Yl~~~idqi~~~----- 218 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTT---DPE--------------------------RALNYLLSNIDQIPSF----- 218 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhc---CHH--------------------------HHHHHHHhhHhhccCc-----
Confidence 444555554455666665554432221 111 1111111111111100
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hHhhH
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASL 1538 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~i 1538 (2612)
+......-++++...+...|..-.. .+..+..+|..+++.|+-.|..+|..+.. +| .+..-
T Consensus 219 -----------~~~LqlViVE~Irkv~~~~p~~~~~----~i~~i~~lL~stssaV~fEaa~tlv~lS~---~p~alk~A 280 (948)
T KOG1058|consen 219 -----------NDSLQLVIVELIRKVCLANPAEKAR----YIRCIYNLLSSTSSAVIFEAAGTLVTLSN---DPTALKAA 280 (948)
T ss_pred -----------cHHHHHHHHHHHHHHHhcCHHHhhH----HHHHHHHHHhcCCchhhhhhcceEEEccC---CHHHHHHH
Confidence 0001111233334433333332222 23334455555566666655555444432 22 22333
Q ss_pred HHHHHhhcCC-CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1539 VPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1539 vp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
...+++++.+ ++..+. --++.+.... ......+..++-.+.+.+..++-++|+++.++.-.+... .+
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss-rN------- 349 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS-RN------- 349 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-cc-------
Confidence 3344443322 112221 0111121111 112234555666777888889999999999988777653 12
Q ss_pred HhhhHHHHHHHh-------cCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000051 1617 IGLLLPEVKKVL-------VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2612)
Q Consensus 1617 l~~ll~~L~~~L-------~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2612)
...++..|.+-+ .+.....|..-.+++.+.+..++ ++-..++|.+++.+.+..+. .-.....-+.+++..+
T Consensus 350 vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-~~aatvV~~ll~fisD~N~~-aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 350 VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-EVAATVVSLLLDFISDSNEA-AASDVLMFVREAIEKF 427 (948)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHhC
Confidence 122333333332 24456778899999998887664 35567889999888765432 2233334455555544
Q ss_pred ChhhHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhhhc
Q 000051 1690 GTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLG 1728 (2612)
Q Consensus 1690 g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~~g 1728 (2612)
..-+ ..++..++..+.. ....+-+++++.+|..+...+
T Consensus 428 p~Lr-~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 428 PNLR-ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred chHH-HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 3211 1122222222111 233444677777777665543
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=1.3 Score=58.35 Aligned_cols=360 Identities=18% Similarity=0.213 Sum_probs=191.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i-~~~~~~~~R~~Al~al~~L~~~~~~~ 1413 (2612)
..+.|+.+.+.+..+.-...||.|+.||..+++.+....... . |+.+.+.+ .|..|+..-..++. +++....
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~-G-mk~li~vL~~D~~D~E~ik~~Ld---Tl~il~~-- 92 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQ-G-MKPLIQVLQRDYMDPEIIKYALD---TLLILTS-- 92 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHc-c-cHHHHHHHhhccCCHHHHHHHHH---HHHHHHh--
Confidence 356788888888877767889999999999998654333221 1 22223333 23334433333332 2222111
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREA---AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~a---a~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p 1490 (2612)
.|..|.|-+. +.+....++..+-. -+..+..++..++..++.+|..+++++.++..+-|
T Consensus 93 ----------------~dd~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 93 ----------------HDDSPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred ----------------cCcchhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 1212222111 11111122111100 14455667778888999999999999999999988
Q ss_pred hhhhhh---hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh----hHhhHHHHHHhhcCCC-----ChhHHHHHH
Q 000051 1491 QQLSQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDP-----NDHTKYSLD 1558 (2612)
Q Consensus 1491 ~~l~~~---L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~ivp~Ll~~l~d~-----~~~~r~al~ 1558 (2612)
..+... +|.-+..++.+|.|++.-+|..+.--|..+.+..++- .++.++..|+..+... .-.+.+|+.
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 776554 5778889999999999999999999999988764421 2356677777776432 122446765
Q ss_pred HHHhc--------ccccc-CChhhHhhHHHHHHHhh-cCCCHHHHHHH-----HHHHHHHhhccCCCCcc------hhhH
Q 000051 1559 ILLQT--------TFVNT-VDAPSLALLVPIVHRGL-RERSAETKKKA-----AQIVGNMCSLVTEPKDM------IPYI 1617 (2612)
Q Consensus 1559 ~L~~~--------~~~~~-i~~~~l~~iip~L~~~l-~d~s~~vr~~a-----~~~l~~l~~~~~~~~~l------~~~l 1617 (2612)
.+... .|... ---|.+..++|.+.-+- ....|...+.+ .+++..+..- +.+... .-.-
T Consensus 235 ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 235 LLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHH
Confidence 44320 11111 00122222333332221 11245544433 2333333221 111111 1112
Q ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC----------Cch----hhHHHHHHHhccCCCHHHHHHHHHH
Q 000051 1618 GLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQG 1681 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~~g~~----------~~~----~ll~~L~~~L~~~~~~~~R~~aa~~ 1681 (2612)
..++..|...+.++ ..+|+..+..+++.+++..... +++ .++-.++....+..+...|...+.+
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 34677777777665 4678888888888887753211 122 2333333334444566788887777
Q ss_pred HHHHHHHhChhhHHhHhHHHHHhccCCCh-hhHhHHHHHHH
Q 000051 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFK 1721 (2612)
Q Consensus 1682 L~~i~~~~g~~~l~~llp~l~~~~~~~~~-~vR~~~~~~l~ 1721 (2612)
+-...-.- .+.-..++..++..+.+... .+..|.+.+.+
T Consensus 394 f~s~l~dN-~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~ 433 (970)
T KOG0946|consen 394 FRSYLYDN-DDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVG 433 (970)
T ss_pred HHHHHhcc-hhhHHHHHHHHhhhhccccccchhhhhHHHHh
Confidence 64433210 01113344444444444322 55555554443
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.02 Score=75.03 Aligned_cols=220 Identities=18% Similarity=0.182 Sum_probs=150.2
Q ss_pred hHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhH
Q 000051 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2612)
Q Consensus 1698 lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~ll 1777 (2612)
+...+..+.++...+|-+++..+..+.+.-...=.-....++...+..++|++.+|--.|.++...+++.|+++.++.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 44455666788889999999999999874433222334679999999999999999999999888888888887555555
Q ss_pred HHHhhccCCC--chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhCh---hhHHHHHHHHHHH
Q 000051 1778 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMV 1852 (2612)
Q Consensus 1778 p~L~~~l~d~--~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~---~~~~~vl~~L~~~ 1852 (2612)
....+.-... +.+++.+ ++++.++. .+|+ .++..++.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVG--Eai~k~~q-------------------------------a~Gel~~~y~~~Li~tfl~g 855 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVG--EAILKVAQ-------------------------------ALGELVFKYKAVLINTFLSG 855 (982)
T ss_pred HHHHhcccCCCccceehHH--HHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHHh
Confidence 4433222111 2333332 44444332 2232 2444455554455
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhh-------hH
Q 000051 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP-------SI 1924 (2612)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~-------~l 1924 (2612)
..|++..-|..++..++.++..+...+.+++..++..++.... |.+.-+|.+|+..+..+...+|...+| ..
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6788888999999999999987766666777777777776665 778899999999999999999977655 22
Q ss_pred HHHHhhhcC-CCChhHHHHHHHHHHHH
Q 000051 1925 IPILSRGLK-DPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1925 lp~L~~~L~-d~~~~vR~~a~~aL~~l 1950 (2612)
...+....+ +++..+|..+|.++-++
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 233333333 34455677777776654
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.18 Score=66.31 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcc---hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000051 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2612)
Q Consensus 1336 ~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~---~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~ 1412 (2612)
..-+..+++.|....|......|...|..++.-.... .+.-..+++.|...++++.|+.....|+.|+.+|++.+|+
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 3355677777776645556667777666555321111 2222367888999999998999999999999999999997
Q ss_pred cchhhHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1413 LFEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1413 ~~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
...-.|. +.+|.++..+. -.-.+|-+.+.+++..+...-+.... ..-+-..+.+|+==.-..++.|+....+++...
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6554444 57888877654 45678888999999888765544422 111222333332112244666777777777654
Q ss_pred chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000051 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2612)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2612)
+..-..+.-+.+|.|..+|+..+.++-+.++-|+..+++.+.
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 444344556778999999998888999999999999998775
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.022 Score=70.76 Aligned_cols=190 Identities=17% Similarity=0.180 Sum_probs=134.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh-cChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcC--CCc
Q 000051 2231 LPIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IAL 2307 (2612)
Q Consensus 2231 lp~l~~~L~~~~~~~r~~aa~~L~~li~~-~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~--~~l 2307 (2612)
+...+..+.......|+.+...+..+... .-++.+......++..+.+.+... ..+-+..++.+++.++-.+| ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 34455666667788999998888877744 333456666677888888888754 33667788888998887765 555
Q ss_pred cCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcc-CChhH------HHHHHHHh--hhc----------CCHHHH
Q 000051 2308 KPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALS-TRVDP------LVGDLLSS--LQV----------SDAGIR 2366 (2612)
Q Consensus 2308 ~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~~~-~~~~~------~l~~Ll~~--l~~----------~d~~vr 2366 (2612)
..++..+.+.+.+.+.|. +..+|..++.|||.+.-+. ...+. .+..+... .+. +++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 667788888898999886 5678889999999884432 22222 22211111 111 125689
Q ss_pred HHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 2367 EAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2612)
Q Consensus 2367 ~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2612)
.+++.++.-++...+...........++.+...+++.+.+||.+|.++|+-+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987765322355667778888899999999999999999887654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.032 Score=73.31 Aligned_cols=224 Identities=14% Similarity=0.100 Sum_probs=158.9
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2612)
....+.|+.+.+|.++...+..+++.-.+. -..+...++......+.|.|+-|--+|.+++..+++.... .++|-
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~-~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKA-TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchh-hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHH
Confidence 334567888889999999999888744222 2234567888888999999999999999988888876443 44554
Q ss_pred HHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCC
Q 000051 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2612)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~ 2087 (2612)
+.+.-.+.... .. ....-....|+..++...|+-+..|...++...++..++++
T Consensus 807 L~e~Y~s~k~k-------------------------~~-~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKK-------------------------LQ-TDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccC-------------------------CC-ccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCch
Confidence 44321111100 00 00011234788888888899899999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhhcc---cccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhcccchhccH----HHHHHHHH
Q 000051 2088 MDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA----PNMISTLI 2159 (2612)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~---~~~l~~ll~~Ll~~l~-~~~~~vR~~A~~~L~~l~~~~~~~~~~~~----~~il~~L~ 2159 (2612)
...|..+...++.++.... .+.+.++...++...+ |+.+.+|++|+..+..+...++.++.+.. -+....+.
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 8899999999998877543 3567777777766664 67899999999999999999988877743 45555555
Q ss_pred HHhc-CCChhHHHHHHHHHHHHHh
Q 000051 2160 VLLS-DSDSTTVAAAWEALSRVVA 2182 (2612)
Q Consensus 2160 ~ll~-d~d~~V~~~a~~aL~~l~~ 2182 (2612)
.... ++|..++-.+..++..+-.
T Consensus 941 ~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHH
Confidence 5444 5556677777777666543
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.11 Score=68.11 Aligned_cols=210 Identities=17% Similarity=0.161 Sum_probs=132.6
Q ss_pred hHhHHHHHHHhcCCC-CHHHHHHHHhhhHHhHhhhcchh-----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc
Q 000051 1298 VHAVVDKLLDVLNTP-SEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2612)
Q Consensus 1298 ~~~i~~~L~~~L~~~-~~~Vq~~~~~~L~~lv~~~~~~~-----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2612)
++.+++.|+..|++. +.+++..|++||..++...+... ...|+.+++.|..-.=.+....+..+|..+....+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 678899999999986 67999999999999887766532 246778888887654345566677777777777666
Q ss_pred chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1372 ~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
..++...++..|. ++.-= ....+..|+-....+|..++..=..|+.+.+|.+-..|...+..+-+.++-|+-.++..+
T Consensus 289 AiL~AG~l~a~Ls-ylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 289 AILQAGALSAVLS-YLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHhcccHHHHHH-HHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 6555434433322 22111 123444566666667766664334578889999999998887788888888887777654
Q ss_pred cHH--hH-----HhHHHHHHhhhcCC----ChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhc
Q 000051 1452 SAQ--GV-----KLVLPSLLKGLEDK----AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLT 1509 (2612)
Q Consensus 1452 ~~~--~v-----~~ilp~Ll~~L~~~----~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~ 1509 (2612)
..+ -+ ..++....+.+.-. +-.+..+.+..|..|+..+|......+ .+|...+...+.
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 433 11 22222222222211 224566777788888887776554433 345555555443
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=71.09 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=84.2
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH---HHhc
Q 000051 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 2303 (2612)
Q Consensus 2227 l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L---~~~~ 2303 (2612)
....+|+|.+|+......-+-.|..++.++++..+.+.+.|.+++++.|+.+.|+.+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 357999999999999888999999999999999666889999999999999999987 889999999999999 7788
Q ss_pred CCCccCchHHHHHHHH
Q 000051 2304 GIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2304 ~~~l~p~lpqL~~~~~ 2319 (2612)
|..+.||.+||.+.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999875
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.025 Score=70.34 Aligned_cols=191 Identities=19% Similarity=0.189 Sum_probs=133.0
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhh--CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC--C---
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N--- 1532 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~--~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~--- 1532 (2612)
+...++.+.++.-.+|..++..+..+... .++.+......++..+.+.++-...+-+..|+++++-++-.++ .
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33444555566667777777776555532 4566677778888999999987777777788888888876654 1
Q ss_pred hhHhhHHHHHHhhcCCCChh--HH-HHHHHHHhccccccCChhhHhhHHHHHH---Hh--hc----------CCCHHHHH
Q 000051 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKK 1594 (2612)
Q Consensus 1533 ~~i~~ivp~Ll~~l~d~~~~--~r-~al~~L~~~~~~~~i~~~~l~~iip~L~---~~--l~----------d~s~~vr~ 1594 (2612)
..+..+.|.|.+.+.|.... .| .|+.+|.-..|+...+.......+..+. .. .+ ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 24578889999998887654 44 4666666656665544444432222222 11 11 12357889
Q ss_pred HHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000051 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g 1651 (2612)
.|...++-+...+.. ..+..++...+|.|..+|.+++.+||.+|.++|+-+.+...
T Consensus 205 aAL~aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999998876543 34667778899999999999999999999999999988654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.003 Score=67.29 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH-hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
+++|.+++.+.+.++.+|..+..++..+....+.. .++ .++|.+++.+.+++.+.+..++.+|+.++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36888888999999999999999999987653222 233 78999999999999999999999999999876543333
Q ss_pred hh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
.. .++++.+.+.+++.+.++|..++.+|.+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 458999999999999999999999999876
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00047 Score=61.79 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000051 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2612)
|.+|.+|+.+|+.+++..+..+.+|+.+++|.++.++.|+++.||.+|..+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998888889999999999999999999999999999888753
|
... |
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0016 Score=71.45 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=89.7
Q ss_pred HhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH
Q 000051 2478 KSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2612)
Q Consensus 2478 ~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2612)
+++..||+.++|.+|..++..++..+... ..+..++..+..++.| +.|+|.++..++..++..+|..+.+.++.
T Consensus 33 FKh~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~ 106 (169)
T PF08623_consen 33 FKHKVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDS 106 (169)
T ss_dssp CEEEEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTT
T ss_pred ceeeecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 35677889999999999999999987543 3578899999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhhcC--CcchhhhhHH----------HHHHHH-hcccccchhh-hHhhhhh
Q 000051 2558 FGPALAECLKD--GSTPVRLAAE----------RCAVHA-FQLTRGIIYS-RSTKIYN 2601 (2612)
Q Consensus 2558 l~p~l~~~~~~--~~~~vk~aae----------~~~~~~-~~~~~~~~~~-~~~~~~~ 2601 (2612)
+++++-..+.- +...||+..| ||..++ .++.+.+..- ++.++++
T Consensus 107 l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~ 164 (169)
T PF08623_consen 107 LVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVE 164 (169)
T ss_dssp THHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHH
T ss_pred HHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 99999998753 4555666555 777777 6665544444 3444443
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=2.3 Score=56.27 Aligned_cols=305 Identities=16% Similarity=0.135 Sum_probs=159.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc-----CCCHHHH-HHHHHHHHHHHHHhchh------hhh
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-----SSSSERR-QVAGRALGELVRKLGER------VLP 1922 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~-----~~~~~~R-~~A~~aL~~lv~~~~~~------~l~ 1922 (2612)
|-...+|-.|-.+...+..+.+..+.+++-.++.....+.. +-+.-.+ -++..+.|--...+.+. ...
T Consensus 408 dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~ 487 (978)
T KOG1993|consen 408 DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQE 487 (978)
T ss_pred cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34456788888888777776655443333332222222221 1111122 22233333222222111 234
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH--hChh
Q 000051 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS--AGMQ 1999 (2612)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~-d~~Vr~~A~~al~~l~~~--~g~~ 1999 (2612)
.++|.+.. -.+...-.|..++..+|+.+..--+ .+.-+.+...+...+.|. |.-||-+++.++..+.+. +..+
T Consensus 488 ~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 488 ALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred hhCHHhhh-cccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 45555541 1123345788899989887653222 223345566677788887 788999999999988775 3455
Q ss_pred hhhhhHHHHHHhc-------cCCCcchHHHHHHHHHhhhcccccccccc------hhhccCCcch--hHH---HHHHHHH
Q 000051 2000 AIDEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPHIL------PKLVHLPLSA--FNA---HALGALA 2061 (2612)
Q Consensus 2000 ~~~~ilp~Ll~~L-------~~~~~~~~al~~L~~il~~~~~~vlp~Li------p~L~~~~~~~--~~~---~al~~La 2061 (2612)
.+-+++|.+...+ +.-+++-..|..+..++..-+..+-|... |.+=+..... -++ .++..+.
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 5666666555433 23344456677777777655555555532 3322111110 133 3444455
Q ss_pred HHhCCChhhhHhhHHHHHHHhcCCC---CHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 000051 2062 EVAGPGLNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSAYLI 2136 (2612)
Q Consensus 2062 ~~~g~~l~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L 2136 (2612)
...|..-.+..+-++|.+--...-+ +.-.-+.+.+-+...+.... .+.+-.++|.+...+.......| .++..+
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii 722 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMII 722 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 5667664455555555444333222 23345666666766666543 25566677777777754333332 334444
Q ss_pred HHH-HHhcccchhccHHHHHHHHHHHhcC
Q 000051 2137 GYF-YKNSKLYLVDEAPNMISTLIVLLSD 2164 (2612)
Q Consensus 2137 ~~l-~~~~~~~~~~~~~~il~~L~~ll~d 2164 (2612)
... .-..+.-+..|...+...+...++|
T Consensus 723 ~sYilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 723 SSYILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2222334456677777777777755
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=4.2 Score=59.14 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=133.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~--~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
....+...+........|+-.+.+++.+... |.... .+.++..+.+.+.+. +++....++.-+++.+-+..|+...
T Consensus 52 ~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~-~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~ 129 (2067)
T KOG1822|consen 52 LEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFS-LYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG 129 (2067)
T ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhh-HHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc
Confidence 4456666677777788999999999999987 54332 234555566666554 4677777888899999998887666
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---H--HhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc
Q 000051 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A--QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~---~--~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p 1490 (2612)
.-+...+..+.+..+-.+..+|......+......+. . ...+.+.-.....+.+....+|.++..++..+....+
T Consensus 130 ~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~ 209 (2067)
T KOG1822|consen 130 RGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGG 209 (2067)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcC
Confidence 5566777777777776777777776666555444333 1 1235666666666777777799999999888876543
Q ss_pred hhh-hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 000051 1491 QQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1491 ~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2612)
..+ ...+.......++...+.+.+||.+-+++++.+....
T Consensus 210 ~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 210 PGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred ccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 333 4445556666677788889999999999999887654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.024 Score=64.86 Aligned_cols=108 Identities=22% Similarity=0.321 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHH-hccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCC
Q 000051 2326 TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 2404 (2612)
Q Consensus 2326 ~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~ 2404 (2612)
++.+|..+..++|.|. .+..-++++++.+...+.++++.+|..++..|..++...-. .....++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHHHcCCC
Confidence 5789999999999994 45566899999999999999999999999999999875322 234555444556778999
Q ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh
Q 000051 2405 DHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2612)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2612)
+.+|..|..++..+.....+..+...+++++..
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~ 109 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISS 109 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999999998874444566667765543
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=2.4 Score=55.31 Aligned_cols=425 Identities=15% Similarity=0.116 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH------hHHhHHHHHH
Q 000051 1393 AKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLL 1464 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~------~v~~ilp~Ll 1464 (2612)
.+...+...+++.++.+-.+.+...+. ..++.++..+.+++ ..+++++..+++.+...-+.. ..+.+++.+.
T Consensus 67 ~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s 146 (678)
T KOG1293|consen 67 TELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFS 146 (678)
T ss_pred hhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 344446666778887776666666655 57899999999988 899999999999998743211 2355555544
Q ss_pred hhhc-CCChhhHHHHHHHHHHHHhhCch-hhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hH-hhHHH
Q 000051 1465 KGLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI-ASLVP 1540 (2612)
Q Consensus 1465 ~~L~-~~~w~~r~~a~~~L~~ia~~~p~-~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i-~~ivp 1540 (2612)
..+. +.+...+..+ .+...+...+. +..-+-..+...+.-++..-+..+|.+|..++..-...+.|+ .. ...+.
T Consensus 147 ~l~s~~lk~~~~l~~--~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~ 224 (678)
T KOG1293|consen 147 LLYSIELKYISRLDV--SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLG 224 (678)
T ss_pred HHHhhhhhhhhhhhh--hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHH
Confidence 4333 1111111100 00111111111 222222233333333344447889999999888533333332 21 11111
Q ss_pred HHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc-------c
Q 000051 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD-------M 1613 (2612)
Q Consensus 1541 ~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~-------l 1613 (2612)
. +.|..-..| -.+.+...++....|-.++.++..++..- ..++ +
T Consensus 225 ~----L~d~~v~~r------------------------~~v~rL~k~~~~s~~l~sl~cl~~~~~~s-~~~d~l~~~~~~ 275 (678)
T KOG1293|consen 225 L----LKDKGVNIR------------------------CVVTRLLKDPDFSERLRSLECLVPYLRKS-FNYDPLPWWFIF 275 (678)
T ss_pred H----Hhccccchh------------------------hhhhhhhhCCCccHHHHHHHHHHHHHhcc-ccccccccceee
Confidence 1 111110000 01233444555555666666666666531 1111 1
Q ss_pred hhhHhhh--HHHHHHHhcCCCHHHHHHHHHHHHH---HHhhhCCC-C---chhhHHHHHHH---hccCCCHHHHHHHHH-
Q 000051 1614 IPYIGLL--LPEVKKVLVDPIPEVRSVAARAIGS---LIRGMGEE-N---FPDLVSWLLDA---LKSDNSNVERSGAAQ- 1680 (2612)
Q Consensus 1614 ~~~l~~l--l~~L~~~L~d~~~~VR~~A~~aL~~---L~~~~g~~-~---~~~ll~~L~~~---L~~~~~~~~R~~aa~- 1680 (2612)
.+..+.. .-.....+.+|.+..-..+...... ++...... + .....+.++.. ++... ..-|.-++.
T Consensus 276 ~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~-~~~~~i~l~e 354 (678)
T KOG1293|consen 276 FDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD-EKYRLILLNE 354 (678)
T ss_pred ccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc-hhhhHHHhhh
Confidence 1111111 1112223334432222222222222 22222111 1 11222322222 11111 112221111
Q ss_pred H--HHHHHHHhChhhHHhH-----hHHHHHhccCCChhhHhHHHHHHHHhhhhh---ccchhhhHHhHHHHHHhhcCCCC
Q 000051 1681 G--LSEVLAALGTVYFEHI-----LPDIIRNCSHQRASVRDGYLTLFKYLPRSL---GVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1681 ~--L~~i~~~~g~~~l~~l-----lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~---g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
. ........|...-+++ +..++......+...+.+++.++..+.+.. ... +--.+++.++++.+.|++
T Consensus 355 ~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~ 432 (678)
T KOG1293|consen 355 TLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPE 432 (678)
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcc
Confidence 1 1111111221111111 112222222346777888888877776543 232 223568888889999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhch---h-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch
Q 000051 1751 ESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~---i-~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~ 1826 (2612)
..|..+++.++..++-.|++-. + .-.+..+.....+.+..+|..++..+..+.|.+ |+.
T Consensus 433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~--- 495 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE--- 495 (678)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH---
Confidence 9999999999999987776531 1 125666778888999999999999999987642 110
Q ss_pred HHHHHHHHHHhChhhHHHHHH-HHHHHccCCCHHHHHHHHHHHHHHHhcChhh
Q 000051 1827 EAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2612)
Q Consensus 1827 ~~~~~~l~~~Lg~~~~~~vl~-~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2612)
..... ..++-. .+....+|+++.|.+.+.+++..+.-+..+.
T Consensus 496 --~k~~~--------~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 496 --EKFQL--------LAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred --HHHHH--------HHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 00011 111222 2223458999999999999999998765543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0031 Score=63.01 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=69.5
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1422 lp~ll~~l-~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
+|.++..+ +|+++.||..+..+++.+ +-...+|.+.+.+.+++|.+|..++..|+.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46788888 899999999988888743 235778899999999999999999999998742 557
Q ss_pred HHHHhhhhcCC-CHHHHHHHHHHHH
Q 000051 1501 VPKLTEVLTDT-HPKVQSAGQTALQ 1524 (2612)
Q Consensus 1501 vp~L~~~L~D~-~~~VR~aA~~aL~ 1524 (2612)
++.+.+.+.|+ +..||..|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888664 5677999999885
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.036 Score=63.78 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=123.2
Q ss_pred chhHHHHhhhhcC--CCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhc-----------
Q 000051 1498 PKIVPKLTEVLTD--THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQT----------- 1563 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~----------- 1563 (2612)
..-+|.+...+.| ..|.||-.|..||++++. ...++.+.+..+||...+++ |.-++...
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccc
Confidence 3446667777765 478899999999999983 23455666666788877775 32222221
Q ss_pred --cccccCCh--hhHhhHHHHHHHhhcCCC--HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHH
Q 000051 1564 --TFVNTVDA--PSLALLVPIVHRGLRERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2612)
Q Consensus 1564 --~~~~~i~~--~~l~~iip~L~~~l~d~s--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~ 1637 (2612)
.+.. +++ |....-++.+...+.|.+ .-.|..+.-.+.++.. +.-+..+.+.+.+++.-.|.
T Consensus 139 ~~p~~S-vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~------------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 139 SSPYIS-VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT------------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred cCcccc-CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc------------HHHHHHHHHhcccchHHHHH
Confidence 1111 111 101111333333333321 1233334333433321 23566777788888999999
Q ss_pred HHHHHHHHHHhhhCCCCchhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHH
Q 000051 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1638 ~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~-~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
.++-+||.+-. +.-+|.|.+.|.+. +...+|..++.+|+.+.. ++.++.+.+.++++.+-+|++|
T Consensus 206 EvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 206 EVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred HHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHH
Confidence 99999998754 34456666666543 345699999999887754 3455567777889999999999
Q ss_pred HHHHHHhhhhhccchh
Q 000051 1717 LTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1717 ~~~l~~L~~~~g~~f~ 1732 (2612)
..+|..+--.-++.|.
T Consensus 272 ~valdm~eyens~~~e 287 (289)
T KOG0567|consen 272 EVALDMLEYENSKEFE 287 (289)
T ss_pred HHHHHHHHHhcccccc
Confidence 9888776655555543
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=3.9 Score=55.82 Aligned_cols=89 Identities=21% Similarity=0.173 Sum_probs=71.1
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHH---hcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---
Q 000051 1846 LAALYMVRSDVSLSVRQAALHVWKTIV---ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--- 1919 (2612)
Q Consensus 1846 l~~L~~~~~D~~~~VR~aA~~~l~~l~---~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~--- 1919 (2612)
+..-...+++.+..+|-.|++++..-. ...+..+-+.+...+|.++.++...++-.-..|..|+..++...|+.
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s 884 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS 884 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 333334578999999999999987533 34567788888999999999999999999999999999999998875
Q ss_pred -hhhhHHHHHhhhcCC
Q 000051 1920 -VLPSIIPILSRGLKD 1934 (2612)
Q Consensus 1920 -~l~~llp~L~~~L~d 1934 (2612)
++..++|.+...+.+
T Consensus 885 R~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 885 RFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 567788887765443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.12 Score=59.69 Aligned_cols=237 Identities=17% Similarity=0.174 Sum_probs=134.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhChhhHHHhHhH
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2612)
..+.+...+.+...+...+-+|+++.. ..-+|.+...+.| ..|-+|..+..+||.+. .+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~-----------~~~ 100 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-----------DPE 100 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-----------chh
Confidence 334444444443444444555554432 3455666665554 45778999998888763 144
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcc--hHHHHHHHHHhhhcccccccccchh
Q 000051 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPK 2043 (2612)
Q Consensus 1966 ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~--~~al~~L~~il~~~~~~vlp~Lip~ 2043 (2612)
+++.+.+...|+-..|++....|+.++-...+........|+.- .++... ...+..++..+-
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S---vdPa~p~~~ssv~~lr~~ll------------- 164 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS---VDPAPPANLSSVHELRAELL------------- 164 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc---CCCCCccccccHHHHHHHHH-------------
Confidence 56667777788888888887777776643221111111111100 011000 011112222110
Q ss_pred hccCCcch-hHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcC
Q 000051 2044 LVHLPLSA-FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVG 2122 (2612)
Q Consensus 2044 L~~~~~~~-~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~ 2122 (2612)
+..... .+-+++=+|-.. | -..-+..+.+.+.+++.-.|..+..+++++-. +.-++.|.+.+.
T Consensus 165 --d~t~~l~~Ry~amF~LRn~-g------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 165 --DETKPLFERYRAMFYLRNI-G------TEEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLL 228 (289)
T ss_pred --hcchhHHHHHhhhhHhhcc-C------cHHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHH
Confidence 000000 011121111111 1 13456778888888888889888888888754 233444445543
Q ss_pred --CCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000051 2123 --DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2612)
Q Consensus 2123 --~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~ 2184 (2612)
.+++.+|..|+.+||.++. ++.+..|...+.|+++-|++.+.-+|.-.-...
T Consensus 229 d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 3679999999999999975 477888889999999999999888887654433
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.33 Score=63.67 Aligned_cols=292 Identities=13% Similarity=0.105 Sum_probs=164.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
.|+...+..|+..|..+.+..+ ......+..++.+..|. +..||..|+..|..++..-+ .|++.+..++.
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP-----~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFP-----DLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP----EHVSKVADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-G-----GGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHH
Confidence 3678889999999998887664 22234455567777775 88899999999999887533 57899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHhcCCCc-C--hHHHHHHH
Q 000051 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSV-S--SAVKIRVY 2393 (2612)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~---~~d~~vr~~~l~AL~~vi~~~g~~~-~--~~~~~~i~ 2393 (2612)
+.|+..+......+-.+|-.+...+| ...+..+...+. ..|..+|+.++..|.+-+...+... . .+.-.-|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~--k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP--KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 99998888888999999998876554 345666666665 5678899999999988877766544 2 45667778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHh---hCChhHHHHHHHHHHhhc------CCCCchhhHHHHHHHHHHHhhCCccc
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAI 2464 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~~~~~~~~l~~~l~~~p~~~ 2464 (2612)
+.+.+.+.|-...--.....+|+.+-. ..+......+++-+.... ...+.......+.++...+......+
T Consensus 181 ~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v 260 (556)
T PF05918_consen 181 DEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGV 260 (556)
T ss_dssp HHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCC
Confidence 888888888655555666677777765 234333344443332211 12222222234445555544322222
Q ss_pred cCCchhHHHHHHHHhh----hccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCC--CH----HHHH
Q 000051 2465 SMSPLFLSILDRLKSS----LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD--SS----EVRR 2534 (2612)
Q Consensus 2465 ~~~~~~~~i~~~l~~~----~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~--~~----~vr~ 2534 (2612)
.. .+++.++++. +.+=....+-.-+..+..+..+++..+ ....+..+...+..-+... .+ ..-.
T Consensus 261 ~S----skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vE 334 (556)
T PF05918_consen 261 SS----SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVE 334 (556)
T ss_dssp ------HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHH
T ss_pred Ch----HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhh
Confidence 22 2344444443 332233455566677777766665322 1122333334443322221 22 2235
Q ss_pred HHHHHHHHHHhhCch
Q 000051 2535 RALSALKSVAKANPS 2549 (2612)
Q Consensus 2535 ~a~~~l~~~a~~~~~ 2549 (2612)
..+.++..+++..|+
T Consensus 335 cLL~afh~La~k~p~ 349 (556)
T PF05918_consen 335 CLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHHTT-TH
T ss_pred HHHHHHHHHhhhCcc
Confidence 677788899998886
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.62 Score=54.78 Aligned_cols=211 Identities=18% Similarity=0.195 Sum_probs=116.6
Q ss_pred HHHHHHHHHHH-hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHH
Q 000051 1757 ALGAGHVLVEH-YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2612)
Q Consensus 1757 Al~al~~lv~~-~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~ 1835 (2612)
+..++..+.+. ++....+.++|.+..|+..++..++.-++..+|-++..+ |.... ..+.-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdc--------------DtnaV-----seill 123 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDC--------------DTNAV-----SEILL 123 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcC--------------chhhH-----HHHHH
Confidence 56667666653 455567789999999998888888888888888876321 11111 11111
Q ss_pred HhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHH-HH--HHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM-NT--LISSLASSSSERRQVAGRALGEL 1912 (2612)
Q Consensus 1836 ~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll-~~--L~~~L~~~~~~~R~~A~~aL~~l 1912 (2612)
+.. +++++.+..+....+.+|..+|++.++.++. +|..+.-+++.=+ .. +.+.....+.-.|.-....+-++
T Consensus 124 vvN----aeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIiei 198 (524)
T KOG4413|consen 124 VVN----AEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEI 198 (524)
T ss_pred Hhh----hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHH
Confidence 111 3466667777778888999999999999875 5655555544311 10 01111122333344333333333
Q ss_pred HHHhchh----hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhc--CCcHHHHHHH
Q 000051 1913 VRKLGER----VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESA 1985 (2612)
Q Consensus 1913 v~~~~~~----~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~--D~d~~Vr~~A 1985 (2612)
....+.. -.+-++..|..-++. +|.-|+.+++....+++....+..+.+. ..++..+...+. |.+|--+-.+
T Consensus 199 fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfra 277 (524)
T KOG4413|consen 199 FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRA 277 (524)
T ss_pred HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHH
Confidence 3222111 134566666666664 6777788877777777655443332211 345555555443 4444433334
Q ss_pred HHHHHHH
Q 000051 1986 GLAFSTL 1992 (2612)
Q Consensus 1986 ~~al~~l 1992 (2612)
.-.++++
T Consensus 278 lmgfgkf 284 (524)
T KOG4413|consen 278 LMGFGKF 284 (524)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.21 Score=62.53 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCCccC--chHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhccC-ChhHHHHHHHHhhhcCCHHHHHHH
Q 000051 2294 STLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALST-RVDPLVGDLLSSLQVSDAGIREAI 2369 (2612)
Q Consensus 2294 ~~L~~L~~~~~~~l~p--~lpqL~~~~~-k~L~d~~~~vR~~Aa~aLg~L~~~~~-~~~~~l~~Ll~~l~~~d~~vr~~~ 2369 (2612)
.....++......+.+ .+..+.+.++ .+++.++..+|..|.+|||...-+.. ....+++.+...++..+..+|..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444555555444454 3346665554 78999999999999999999866544 455778888888866688999999
Q ss_pred HHHHHHHHHhcCCCcChH--------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2370 LTALKGVLKHAGKSVSSA--------VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~--------~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
++++..++...|...-.. ....+...+.+.+.+.++.++..+++.+++|..
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 999999998888654322 346788889899988899999999999999754
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.008 Score=60.00 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000051 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2612)
Q Consensus 1578 ip~L~~~l-~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~ 1656 (2612)
+|.|.+.+ +++++.+|..++.+++.+.. +..++.+...+.|+++.||..|+.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 45677777 78899999999999884322 3578889999999999999999999998742 5
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHH
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~ 1683 (2612)
+.++.|.+.+.++....+|..++++||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 677888888888777767888877764
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.076 Score=63.72 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=105.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-h
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-G 1455 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~ 1455 (2612)
-++.+..+++..+|+..++.++.+++..+. .+ .-...+. ..++.+...+.++++.+|..|..++..+....... .
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-Ch-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 345667777776689999999998888653 22 1223333 47889999999999999999999998775554333 4
Q ss_pred HHhHHHHHHhhhcCCCh--hhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1456 VKLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
++..++.+.+...+..| ..+.+++.+|..|.-... ....+...+|.++.++...+..+|..+.++|..++.
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 57788888887665544 667788999988864321 122234456777788888889999999999988876
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.07 Score=66.45 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=142.1
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhc
Q 000051 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2612)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2612)
.++.+.+-+.+.+.+.-.-.+++-.++-++ .+.-..+.++.++..-.+.......|+.+.+++.+.-+. .. .
T Consensus 445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~m--Lgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe----~ 516 (926)
T COG5116 445 REIYEKLKELLKNDRALLGEAAVYGMGLLM--LGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QE----M 516 (926)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccceee--ecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HH----H
Confidence 456667777776665544444444443322 233345667776665443333456677777777666432 11 2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2612)
.-+.+.+++.++ ++-.|.++++.++...-+-|+ . .++..++.. ..|.+.+||++|..+++.+.-.- .
T Consensus 517 add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn--~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~ 584 (926)
T COG5116 517 ADDYINELLYDK-DSILRYNGVFSLALAYVGTGN--L----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----R 584 (926)
T ss_pred HHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc--c----hhHhhhheeecccCchHHHHHHHHheeeeEecC-----c
Confidence 223556666666 799999998877765544443 2 233444443 78999999999999987763211 3
Q ss_pred hHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC---Ch
Q 000051 1458 LVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NP 1533 (2612)
Q Consensus 1458 ~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~ 1533 (2612)
..++..++.|. +.+..+|.+..-+||-.+.+...+. .+..|-.++.|++.-||..|+-+++-+..... ||
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 34566666665 4578999999999987766544432 23344557789999999999999988775543 35
Q ss_pred hHhhHHHHHHhhcCCCC
Q 000051 1534 EIASLVPTLLMGLTDPN 1550 (2612)
Q Consensus 1534 ~i~~ivp~Ll~~l~d~~ 1550 (2612)
.+..|...+.+.+.|..
T Consensus 659 ~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 659 NVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 56677777776665543
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=62.93 Aligned_cols=107 Identities=22% Similarity=0.207 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch---hh-hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHH
Q 000051 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGE---RV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2612)
Q Consensus 1886 ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~---~~-l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~ 1961 (2612)
+++.+++.+.+.++..|..++.+++.++....+ .+ ...++|.+...+.++++.++..++.+|+.+..... .....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHH
Confidence 456677778888899999999999999865322 22 34788888888999999999999999999865432 22222
Q ss_pred hH-hHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1962 FM-DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1962 ~l-~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
+. ..+++.+.+.+.+.+.++++.++.++..+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23 458999999999999999999999888764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.43 E-value=9.8 Score=55.30 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=112.7
Q ss_pred HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
++.+-.++|.|...|.+++-.+|..|+.++|.|...-..++...++.++...+.-+.|.+..||-+++++..++.-. +
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~ 331 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--N 331 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--C
Confidence 33456678888888888888899999999999887666667777899999999999999999999999998877543 5
Q ss_pred hhHhh---HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-c-
Q 000051 1533 PEIAS---LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V- 1607 (2612)
Q Consensus 1533 ~~i~~---ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~-~- 1607 (2612)
|.+.. +.-.+.....|++..+|. ..++...-+....-...+.++..+...+.|..|.||..|..-+..+.+. .
T Consensus 332 ~~~~~~~~~~~~l~~~~~D~~~rir~--~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~ 409 (1266)
T KOG1525|consen 332 PSIAKASTILLALRERDLDEDVRVRT--QVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYC 409 (1266)
T ss_pred chhhhHHHHHHHHHhhcCChhhhhee--eEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 54422 222333344455544431 0000000000001111122556666778899999999999988877763 1
Q ss_pred ---CCCCcchhhHhhhHHHHHHHhcCCCHHHH
Q 000051 1608 ---TEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2612)
Q Consensus 1608 ---~~~~~l~~~l~~ll~~L~~~L~d~~~~VR 1636 (2612)
...+...+-.+.+-..+..++-..+.+.|
T Consensus 410 ~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 410 LRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred hhccCcccccccccccchhHHhhHhhccccHH
Confidence 11233444444444455555554444555
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.033 Score=65.50 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=123.4
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH--
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-- 1535 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-- 1535 (2612)
..+...+..|++++|..+..++..+..++.-.++.+...|..++..+++-+++....|-.+||.+++.+...+.+.-.
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677889999999999999998887777888888899999999999999999999999999999988765422
Q ss_pred -hhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcc
Q 000051 1536 -ASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2612)
Q Consensus 1536 -~~ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2612)
+..+-.|+..-.+.+..+|+ +-++|.. .+.. ..-..+++.|..++...++.+|..++.+..+....++-+...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~~---vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVA--MVNH---VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHH--HHhc---cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 33333333333344445553 3333332 1222 223456777777788888999999988776655544433334
Q ss_pred hhhHhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000051 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2612)
.+|...+.+.+.+-+.|.-|.+|+.|-..
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHH
Confidence 45566677777777777777766555433
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.27 Score=63.59 Aligned_cols=205 Identities=19% Similarity=0.139 Sum_probs=127.8
Q ss_pred CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC
Q 000051 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370 (2612)
Q Consensus 1295 ~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg 1370 (2612)
+.-+..++..++.+...+.-.||..+...+..++....+-. ..+...++..+.+- +..+|..|..+|..+-...+
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCC
Confidence 34567778888888888999999999888887776444322 33444555555543 46899999999988764333
Q ss_pred cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHHHH
Q 000051 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA-ECAARAMMS 1449 (2612)
Q Consensus 1371 ~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa-~~al~~i~~ 1449 (2612)
... .++.+.+...++++.++.+|.+|+..+..=. .-+|.++....|-+..+|+.+ ..++..+
T Consensus 159 dee---~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn------------sTlp~IveRarDV~~anRrlvY~r~lpki-- 221 (892)
T KOG2025|consen 159 DEE---CPVVNLLKDLIQNDPSDEVRRAALSNISVDN------------STLPCIVERARDVSGANRRLVYERCLPKI-- 221 (892)
T ss_pred CCc---ccHHHHHHHHHhcCCcHHHHHHHHHhhccCc------------ccchhHHHHhhhhhHHHHHHHHHHhhhhh--
Confidence 333 3688889999988889999999877443311 346777888888888888876 3333333
Q ss_pred hhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHH-HHHhhCchhhhhhhchhHHHHhhhhcCCC-HHHHHHHHHHHHH
Q 000051 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG-AMAYCAPQQLSQCLPKIVPKLTEVLTDTH-PKVQSAGQTALQQ 1525 (2612)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~-~ia~~~p~~l~~~L~~ivp~L~~~L~D~~-~~VR~aA~~aL~~ 1525 (2612)
++....++.-+-.+-.+|.+.+..+|.++...+. .+..... .=++.+++-++=++ .+|+..+.+|+-.
T Consensus 222 d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 222 DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2222233333333445677777777776666552 2332211 11222344444333 3677666666654
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.34 E-value=6.2 Score=51.94 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=134.1
Q ss_pred hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---hcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCch
Q 000051 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2612)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~---l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~ 1491 (2612)
...+..++-+++.+...++..||...+..+..++.. .++.-+..+...+...+.+....+|..|+.+|..+-.. |.
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~ 158 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PK 158 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CC
Confidence 346778888999999999999999999999999873 44445688888888999999999999999998876532 11
Q ss_pred hhhhhhchhHHHHhhhh-cCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHH-HHHHhccccccC
Q 000051 1492 QLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTV 1569 (2612)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al-~~L~~~~~~~~i 1569 (2612)
.- =-.++..+..++ +|++++||.+|..++..=. ...|.++....|-+...|.++ ..+.. +. ..
T Consensus 159 de---e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn---------sTlp~IveRarDV~~anRrlvY~r~lp-ki--d~ 223 (892)
T KOG2025|consen 159 DE---ECPVVNLLKDLIQNDPSDEVRRAALSNISVDN---------STLPCIVERARDVSGANRRLVYERCLP-KI--DL 223 (892)
T ss_pred CC---cccHHHHHHHHHhcCCcHHHHHHHHHhhccCc---------ccchhHHHHhhhhhHHHHHHHHHHhhh-hh--hh
Confidence 10 012333333333 7999999999987664221 234455555555555555322 11111 00 01
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH-HhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHH-HH
Q 000051 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS-LI 1647 (2612)
Q Consensus 1570 ~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~-l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~-L~ 1647 (2612)
..-+...-+-.+..|+.|++..+|.++.+.+.. -... .+ ..++..|..+=.+.+.+|+-.+.+++=. +.
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~-~d--------gni~ElL~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRF-SD--------GNILELLERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh-cc--------ccHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 112334556677889999999999988887643 1111 01 1245555554445666888888888766 33
Q ss_pred hhhC
Q 000051 1648 RGMG 1651 (2612)
Q Consensus 1648 ~~~g 1651 (2612)
...|
T Consensus 295 e~v~ 298 (892)
T KOG2025|consen 295 EDVG 298 (892)
T ss_pred HHhh
Confidence 4444
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.19 Score=63.93 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHhcc-----------
Q 000051 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLGR----------- 1412 (2612)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~-----~~~~~~~R~~Al~al~~L~~~~~~----------- 1412 (2612)
++....|++|...+..+++..+..... .++..+...++ ...||+.+.+|+..+++++.....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 343466777888888888876654442 23445555543 345899999999999999964321
Q ss_pred -cchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHH
Q 000051 1413 -LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2612)
Q Consensus 1413 -~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~ 1481 (2612)
.+..++ .+++|-+. .-.+..|-+|..|...+...-..+++.....++|.++..|.+++.-++.-|+.+
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 123333 35666655 334667889999999888888899999899999999999998887666555443
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.53 Score=57.11 Aligned_cols=241 Identities=17% Similarity=0.135 Sum_probs=143.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhcccc-hhc-cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHH
Q 000051 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2116 ~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~-~~~-~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
.|-..+.++++.+|..|..+|+.+....+.+ +.. .+.-++.-...-++ |......+..++.++.+... .-+...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~--~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKN--FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcC--CChhhH
Confidence 3445667778888888888888877766543 222 23333334444443 34444555777777773311 111111
Q ss_pred HHHHHH-HHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhh
Q 000051 2194 KVIRDA-ISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 2272 (2612)
Q Consensus 2194 ~~l~~~-l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i 2272 (2612)
..+.+. .+... + .+-....|......+..+.++.. ..++..-..+
T Consensus 79 ~~i~~~l~~~~~-------------~--------------------q~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~f 124 (262)
T PF14500_consen 79 VKILRSLFQNVD-------------V--------------------QSLPQSTRYAVYQLLDSLLENHR-EALQSMGDDF 124 (262)
T ss_pred HHHHHHHHHhCC-------------h--------------------hhhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHH
Confidence 111111 11110 0 01123456666666666666543 3343333344
Q ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH----hc----CCC----HHHHHHHHHHHHHH
Q 000051 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC----LQ----DST----RTVRSSAALALGKL 2340 (2612)
Q Consensus 2273 ~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~----L~----d~~----~~vR~~Aa~aLg~L 2340 (2612)
+..++..+...-++.--..++..+..++...+. .++..++..++.-. +. |+. ++++.+-..||.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-- 200 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-- 200 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--
Confidence 444566665544777777788888888877763 67788887766543 22 221 344444444433
Q ss_pred HhccCChh-HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhh
Q 000051 2341 SALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400 (2612)
Q Consensus 2341 ~~~~~~~~-~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l 2400 (2612)
.++.+. ..+|.|++.+.++...+|..+++.|..++...|.....++...||+.|...+
T Consensus 201 --s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~Ei 259 (262)
T PF14500_consen 201 --STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFEI 259 (262)
T ss_pred --CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 345554 4589999999988888999999999999999987655789999999887543
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.09 E-value=14 Score=53.75 Aligned_cols=179 Identities=14% Similarity=0.157 Sum_probs=115.0
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
.+-+..++|.|...+..++..+|..|...+|.++......++.-+++++...+.-+.|.+.+||-.+.+.....+-+.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 34567889999999999999999999999999998776666677899999999999999999999988887777665432
Q ss_pred cccccHHHHHHHHHHhhhhhhhhhhcCCc---ccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----
Q 000051 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV---- 2259 (2612)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~---- 2259 (2612)
- .......+.-..... |...+.+.+.. ..+..|.+ ..+..++....+.+.+..+.+|.+|+..+..+-++
T Consensus 334 ~-~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~ 410 (1266)
T KOG1525|consen 334 I-AKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCL 410 (1266)
T ss_pred h-hhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111111111111111 11111111111 11222221 12222666667788888999999999999999874
Q ss_pred --cChhhhhhchhhhhHHHHHHhcCCCCHhHH
Q 000051 2260 --TSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2612)
Q Consensus 2260 --~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk 2289 (2612)
.|...+.+-+..|.+-|++++... +-+.|
T Consensus 411 ~~~~~k~~t~~~swIp~kLL~~~y~~-~~~~r 441 (1266)
T KOG1525|consen 411 RSAGGKEITPPFSWIPDKLLHLYYEN-DLDDR 441 (1266)
T ss_pred hccCcccccccccccchhHHhhHhhc-cccHH
Confidence 122334455566666677776543 23344
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.55 Score=56.95 Aligned_cols=200 Identities=15% Similarity=0.182 Sum_probs=129.7
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000051 1742 ILDGLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2612)
Q Consensus 1742 ll~~L~d~~~~VR~~Al~al~~lv~~~~~~-----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~ 1816 (2612)
+-.+|.++++.+|..|+..+..++..++.+ .+..++.-+.+.+. +|..-..++..+..++. ....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~-~~~~------- 73 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVK-MKNF------- 73 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHh-CcCC-------
Confidence 335677889999999999999999887644 44556666666663 44444444666655542 1110
Q ss_pred CCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHh
Q 000051 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2612)
Q Consensus 1817 ~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L 1894 (2612)
+.+....++..++.. ...-...+|....+++..+..+....+...-+.++..+++.+
T Consensus 74 ---------------------~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~ 132 (262)
T PF14500_consen 74 ---------------------SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI 132 (262)
T ss_pred ---------------------ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh
Confidence 001111233333321 122345678888888888887766666555556666666655
Q ss_pred c-CCCHHHHHHHHHHHHHHHHHh----------------------------------------------chhhhhhHHHH
Q 000051 1895 A-SSSSERRQVAGRALGELVRKL----------------------------------------------GERVLPSIIPI 1927 (2612)
Q Consensus 1895 ~-~~~~~~R~~A~~aL~~lv~~~----------------------------------------------~~~~l~~llp~ 1927 (2612)
. ++++..=..+...+..+.... .+.+.+..+|.
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~ 212 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPL 212 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHH
Confidence 5 455655444444444443221 01134688899
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHH
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2612)
+.+.|.+..+.+|..++..|...+...+...+.+|+..+...++.
T Consensus 213 LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 213 LLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888865
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=2.2 Score=55.68 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH-HHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP-QLQTTF 2318 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp-qL~~~~ 2318 (2612)
..+..++.+|+.|+-.+......-.-.+--..+..||++++.++ +..++..++.+++.++-..+..=..|+. ..+.++
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 35677888888887776554321111123356788999999886 6779999999999998766542222332 357788
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCChh------HH-HHHHHHhhhcCCHHHHHHHHHHHHHHHHh
Q 000051 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVD------PL-VGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2319 ~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~------~~-l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2612)
.+.+.+++..+|..+.++|-+++-...... .+ -..++..+.++|++|++.+++-|+.+.-.
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 889999999999999999999964332111 11 23345556788999999999999988653
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.89 E-value=2.3 Score=56.17 Aligned_cols=273 Identities=13% Similarity=0.125 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
...+.-+++-|......+.. .-++.+..++..|.+.+..+|..++..|..+|..-+ .|+.++...+.+.|.-++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccH
Confidence 45666777777777665532 335667788899999999999888888777776644 3788899999999988777
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHH
Q 000051 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~ 1831 (2612)
.....+-.++..++..-+...+..++..+... ...+..+|..++..+..-+..+..... . ..++
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~-----------~-p~~E--- 174 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELL-----------T-PQKE--- 174 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---------------HH---
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHh-----------h-chHH---
Confidence 77777777877777665555455555555421 123456888888877765544321100 0 0001
Q ss_pred HHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc--C----CCHHHHHHH
Q 000051 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA--S----SSSERRQVA 1905 (2612)
Q Consensus 1832 ~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~--~----~~~~~R~~A 1905 (2612)
...-++..+...+.|....--...+.+|+.+-......-.+-...+++.+..... . .+.+.=.-.
T Consensus 175 ---------~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrl 245 (556)
T PF05918_consen 175 ---------MEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRL 245 (556)
T ss_dssp ---------HHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHH
Confidence 1111223333445665555555555555544331100001122334444443331 1 111111111
Q ss_pred HHHHHHHHHHh-----chhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHh
Q 000051 1906 GRALGELVRKL-----GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1906 ~~aL~~lv~~~-----~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
..|+..-...+ +..++..+...+...+.+=..+.|...+..++++...++.......++.++..+...+
T Consensus 246 i~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 246 ISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp HHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 11221111111 1113333333333334443556788888999998777765555555555555555444
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.8 Score=55.12 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHH
Q 000051 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 1688 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~ 1688 (2612)
+.+...++..++.+..-+.+++..||...++.+..+-..+... ...-=+..|++..++.+ +..+|.-+..-+..-+..
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 4577778888888888899999999999999999998888753 22212445566666555 444554444333333334
Q ss_pred hChhhHHhHhHHHHHhccC
Q 000051 1689 LGTVYFEHILPDIIRNCSH 1707 (2612)
Q Consensus 1689 ~g~~~l~~llp~l~~~~~~ 1707 (2612)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 4444446788888888764
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.27 Score=59.08 Aligned_cols=193 Identities=15% Similarity=0.101 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh-CcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cc
Q 000051 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2612)
Q Consensus 1337 ~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~--~~ 1413 (2612)
+-++.++..|...+|...+..+..+++..+... ....+...+.++.+...+.++ ++.+|+.|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 455777777777777777777777777755322 122333446777888888887 79999999999988875433 23
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~ 1492 (2612)
++.|+.+++..+... .-+..++.++..++..+.-.-. .+-+...+|.++..|.+++-.+|..++.+|..++... ..
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~ 167 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP-DM 167 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-HH
Confidence 556666666655443 2355777777777776632111 1234667888888888888899999999999888652 22
Q ss_pred hhhhh-chhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcCCh
Q 000051 1493 LSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2612)
Q Consensus 1493 l~~~L-~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~ 1533 (2612)
....+ .+..+.++.+++.. +.++-..+..-+.++.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 24455666667654 5677777888888887776643
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.013 Score=45.36 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.8
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
++|.+.++++|++++||.+|+++|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.61 E-value=11 Score=48.57 Aligned_cols=175 Identities=21% Similarity=0.179 Sum_probs=113.4
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
..+.++..+.+++..++..+|..+++++..+...++..++ .....++..+.+.+-|..+.||..|..+|..+-+--+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455667788899999999999999999988887654222 23345666677777799999999999999988764443
Q ss_pred CCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhH-HHHHHHHhhhhhccch
Q 000051 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG-YLTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1653 ~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~-~~~~l~~L~~~~g~~f 1731 (2612)
+ -..+...+...++++.+..+|+.+...+. .-+...|.++..+.+.+...|.. +-.++-.+....-.+.
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~---------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNIS---------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHee---------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 2 23444566677788888888876654321 11345567777777765554432 2334433332222222
Q ss_pred hhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000051 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~ 1763 (2612)
.+. +. .+-.++.|.+.+|+.++.+++..
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 222 22 45567888888999888777643
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=67.25 Aligned_cols=188 Identities=15% Similarity=0.224 Sum_probs=137.8
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
+...++|.+.+.+...+..+|....+-+..+...++. ..+.+++.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 5567899999999999999999999988888776654 235567899999999999999999999999999999998
Q ss_pred CCc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhH-HHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP-DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1653 ~~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp-~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
..+ .+++..+.. ++.|+....|.....|++.+...+....-..++. .....+.++-..-|.+....+......+..
T Consensus 403 ~~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHHh-hCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 744 456665544 4445555577777777777765544333233322 233345666677788877777776665543
Q ss_pred hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000051 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2612)
Q Consensus 1731 f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~ 1767 (2612)
...-.+++|.+....-|++..||..|..+.+.+...
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 234456888888888899999999999888776543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.69 Score=57.94 Aligned_cols=114 Identities=20% Similarity=0.136 Sum_probs=82.5
Q ss_pred HHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCch
Q 000051 2391 RVY-SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2612)
Q Consensus 2391 ~i~-~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 2469 (2612)
.++ +++...+.+.+..+|+.+.+|||-.+.... +-..+.+.-+.......+...+..+..++..++...+...+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 444 556678888999999999999999987665 344444544444333446566777777777777665544443222
Q ss_pred -------hHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhc
Q 000051 2470 -------FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQ 2505 (2612)
Q Consensus 2470 -------~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~ 2505 (2612)
...+...+.+.+.++++.++..++.++.+++..+.-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 356888899999999999999999999999988653
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.37 Score=61.44 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhch-----h---------
Q 000051 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGE-----R--------- 1919 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~-----~--------- 1919 (2612)
...-|.+|.+.+..++...++...+.+...+..++.... +.+|..+..|...++.+..+... .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 356899999999999988776666655555555444222 45788889999999888755411 0
Q ss_pred --hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000051 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2612)
Q Consensus 1920 --~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al 1989 (2612)
+...++|.|. .-.+..|-.|..+|..+...-...+ .+.+..++|.+...|.+++.-|+..|+.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1345556555 2224567788888887776533332 356788999999999999999999888764
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.40 E-value=10 Score=51.04 Aligned_cols=422 Identities=19% Similarity=0.257 Sum_probs=201.8
Q ss_pred chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-hhHhhHHHHHHhhcCCCC--hhHH-HHHHHHHhccc
Q 000051 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTF 1565 (2612)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ivp~Ll~~l~d~~--~~~r-~al~~L~~~~~ 1565 (2612)
.+++...+...+|.++.-+..+|..||....+.+..+-+.++. +.++==+..|++...+|+ ..+| .++--+ + .-
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi-~-~g 91 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYI-E-MG 91 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHH-H-Hh
Confidence 4567777888888888888899999999999999999888765 666555667777777776 3344 222111 1 11
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHH---HHHHHHHHHHHHhhccCCCCc---chhhHhhhHHHHHHHhcCCCHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAE---TKKKAAQIVGNMCSLVTEPKD---MIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~---vr~~a~~~l~~l~~~~~~~~~---l~~~l~~ll~~L~~~L~d~~~~VR~~A 1639 (2612)
...++...-..++|.+.+++...... ........+.-+++.....+. -.+.....- -...+.+ .......
T Consensus 92 ~~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~--~~~~l~~--~~~~~~l 167 (501)
T PF13001_consen 92 FDRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFR--DSLGLSD--FCDDVFL 167 (501)
T ss_pred hhcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHH--HHHhhcc--hHHHHHc
Confidence 22344555567888888887643221 111222222223333222110 000000000 0000001 0000000
Q ss_pred HHHHHHHH-----h-----hhCCCCchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhChhhH--HhHhHHHHHhcc
Q 000051 1640 ARAIGSLI-----R-----GMGEENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCS 1706 (2612)
Q Consensus 1640 ~~aL~~L~-----~-----~~g~~~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~l~~~~~ 1706 (2612)
..-.+.+. . .......+.+-..-.+...... ....+....+.=-.++.-+....+ ++.++.++-...
T Consensus 168 ~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsa 247 (501)
T PF13001_consen 168 APWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASA 247 (501)
T ss_pred chhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEe
Confidence 00000000 0 0000001111110001111100 000111111110111111111111 234444444556
Q ss_pred CCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHh-hcC-C-----CChhHHHHHHHHHHHHHHHhhhchhhhhHHH
Q 000051 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLA-D-----ENESVRDAALGAGHVLVEHYATTSLPLLLPA 1779 (2612)
Q Consensus 1707 ~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~-~L~-d-----~~~~VR~~Al~al~~lv~~~~~~~i~~llp~ 1779 (2612)
+++..|-..+-..+..+...+.+ .+.+..++...+. ++. + -...+|...+.-+..- ..+....+..+..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~ed--~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS--~~Aa~~~~~~~~i 323 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLED--PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS--VIAATSFPNILQI 323 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh--HHHHhCCccHHHH
Confidence 67777777777777777665443 2333334444331 100 1 1233444443333221 1122234556666
Q ss_pred HhhccCCC--chHHHHHHHHHH---HHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc-
Q 000051 1780 VEDGIFND--NWRIRQSSVELL---GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR- 1853 (2612)
Q Consensus 1780 L~~~l~d~--~w~vR~~a~~ll---~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~- 1853 (2612)
+..++.++ +.|.|..+++.+ ...+.+++ ..+.+.+++ .++..++...
T Consensus 324 ~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~-----------------------~~~l~~l~~----~i~~~g~p~~~ 376 (501)
T PF13001_consen 324 VFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS-----------------------PQILKLLRP----VILSQGWPLIQ 376 (501)
T ss_pred HhccccCCccccccchhcchhhhcchHHhhhcC-----------------------HHHHHHHHH----HHHhcCccccc
Confidence 67788777 778888888777 44433221 112222222 2222222222
Q ss_pred -------cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh------
Q 000051 1854 -------SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV------ 1920 (2612)
Q Consensus 1854 -------~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~------ 1920 (2612)
...+...|..+.+++|.++...|..+..-+ .++..++..+.++..++|...-.||+.+...+....
T Consensus 377 ~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~ 455 (501)
T PF13001_consen 377 DSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQ 455 (501)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 234678999999999999999887663322 345666777788899999999999999987764321
Q ss_pred hhhHHHH-HhhhcCCCChhHHHHHHHHHHH
Q 000051 1921 LPSIIPI-LSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1921 l~~llp~-L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
....+.. +.....+....+|..+..+...
T Consensus 456 ~~~~~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 456 KRLLLELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 1111111 1222234455566666665544
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.37 E-value=13 Score=47.91 Aligned_cols=253 Identities=15% Similarity=0.129 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------chhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000051 1877 KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL------GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1877 ~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~------~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2612)
..|...+-.++..++.+=+.+.-..|. .+.+..++... |..+...++..+.+++.+++..||..+|..|+.+
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~ 118 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALL 118 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHH
Confidence 344455555555555544433333332 34444555422 3346677778888899999999999999999988
Q ss_pred HHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhh
Q 000051 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2612)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~ 2030 (2612)
+...++ .-......++..+.+-+-|..+.||..|..++..+++.-+... ..+...+...++.+..++..-.++..+.
T Consensus 119 ~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqnDPS~EVRr~allni~- 195 (885)
T COG5218 119 SDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-NRIVNLLKDIVQNDPSDEVRRLALLNIS- 195 (885)
T ss_pred HHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-HHHHHHHHHHHhcCcHHHHHHHHHHHee-
Confidence 766654 2233446677777777789999999999999999886555422 2334455555665554443333333332
Q ss_pred hcccccccccchhhccCCcch---hHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc
Q 000051 2031 VRTTAVLPHILPKLVHLPLSA---FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107 (2612)
Q Consensus 2031 ~~~~~vlp~Lip~L~~~~~~~---~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~ 2107 (2612)
-.+...|.++..-.+..... +.++++-.++...-.+..++. + .+--.+.+.+..++.++..++..--....+
T Consensus 196 -vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri---~-l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d 270 (885)
T COG5218 196 -VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRI---L-LMEWGLLDREFSVKGALVDAIASAWRIPED 270 (885)
T ss_pred -eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcccccee---h-hhhhcchhhhhhHHHHHHHHHHHHhccccc
Confidence 13334455544443322111 123333333332222222222 1 122235566666666655544321111111
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 000051 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2612)
Q Consensus 2108 ~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~ 2146 (2612)
..+-+ |+..+ |...|..+..++..+|+..+..
T Consensus 271 ~~lve----Lle~l---DvSr~sv~v~aik~~F~~R~D~ 302 (885)
T COG5218 271 LRLVE----LLEFL---DVSRRSVLVAAIKGVFEKRPDV 302 (885)
T ss_pred ccHHH----HHHHH---hhhhHHHHHHHHHHHHhhcccc
Confidence 11112 22222 3445557777888888765533
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=95.35 E-value=6.7 Score=51.38 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchhh--------hhhHHHHHh--
Q 000051 1862 QAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERV--------LPSIIPILS-- 1929 (2612)
Q Consensus 1862 ~aA~~~l~~l~~~~~~-~l~~~l~~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~--------l~~llp~L~-- 1929 (2612)
..+.+++..++.+.|. .+.+|++.++..++.++.+ +...-...-...++-++-+.|... .+.+...+.
T Consensus 218 ~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~ 297 (435)
T PF03378_consen 218 HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEK 297 (435)
T ss_dssp HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHH
Confidence 4578899999998886 6899999999999999984 444433333344444444444331 111111111
Q ss_pred ---hhcCC-CChhHHHHHHHHHHHHHHhhCh--hhHHHhHhHHHHHHHHHhcC
Q 000051 1930 ---RGLKD-PSASRRQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALCD 1976 (2612)
Q Consensus 1930 ---~~L~d-~~~~vR~~a~~aL~~li~~~~~--~~l~~~l~~ll~~l~~~L~D 1976 (2612)
..++. ..+.-|.-++.++..++..... ......+..+++.+.+.+..
T Consensus 298 v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~ 350 (435)
T PF03378_consen 298 VWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLER 350 (435)
T ss_dssp THHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHT
T ss_pred HhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcC
Confidence 11111 2344577777888887754321 11234556666666665543
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.4 Score=60.16 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhh
Q 000051 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931 (2612)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~ 1931 (2612)
.+|.+..||++|+-+++-++-..+.. ++..++.|. +-+..+|...+-+||-.|...|.++. +.+|...
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a---~diL~~L 629 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA---TDILEAL 629 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH---HHHHHHH
Confidence 68999999999999998776544432 233333344 56889999999999999988887644 3445555
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHH
Q 000051 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2612)
Q Consensus 1932 L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~ 1980 (2612)
+.|++.-|||++|.+++-++-++.+ .+.+.+..|...+.+.+.|.+++
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~Q~n~-~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILMQCNP-ELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHhhcCc-ccChhHHHHHHHHHHHHhhhhHh
Confidence 6688889999999999998877764 45666777877777777776543
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.19 Score=56.66 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHH------------HHHhcCCCHHHHHHHHHHHHHHHHHhchh------
Q 000051 1859 SVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTL------------ISSLASSSSERRQVAGRALGELVRKLGER------ 1919 (2612)
Q Consensus 1859 ~VR~aA~~~l~~l~~~-~~~~l~~~l~~ll~~L------------~~~L~~~~~~~R~~A~~aL~~lv~~~~~~------ 1919 (2612)
+||..|+.++..++.. .++.+..|++.++|.- .-.+.|++..+|..|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4899999999999998 6788888888887743 33456899999999999999998764211
Q ss_pred -------h------hh----hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhH-HHhHhHHHHHHHHHhcCCcHH
Q 000051 1920 -------V------LP----SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILE 1980 (2612)
Q Consensus 1920 -------~------l~----~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~D~d~~ 1980 (2612)
+ +. ++-..|...+. +.+..+-...+.++..++...+-..+ .+++..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 11 22222333444 34666777888888888776665544 456788888889999899999
Q ss_pred HHHHHHHHHHHHHH
Q 000051 1981 VRESAGLAFSTLFK 1994 (2612)
Q Consensus 1981 Vr~~A~~al~~l~~ 1994 (2612)
|+..+..+++.+..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999988887754
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.17 Score=66.25 Aligned_cols=243 Identities=18% Similarity=0.252 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHhChhhH-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
..+|....++|.+.+..+..+.. ..++|.++..+.-.+ .. ..++..+-.+...+.. .+|-..++|.+++.++-.+
T Consensus 268 ~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a~-~~~ltpl~k~~k~ld~--~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 268 VEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-AA-SDFLTPLFKLGKDLDE--EEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-cc-hhhhhHHHHhhhhccc--cccccchhhhHHHHhcCcc
Confidence 44677788888887777777644 566777766554332 00 0112222222222322 3577779999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhchh-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHH
Q 000051 1751 ESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~i-~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~ 1829 (2612)
..||-.-+.-+..++..+.+..+ +.++|.+..|+.|.+.-+|...+..+..+.-.++.
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~--------------------- 402 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK--------------------- 402 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---------------------
Confidence 99999988888888888876654 55999999999999999999888877776533210
Q ss_pred HHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000051 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2612)
Q Consensus 1830 ~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL 1909 (2612)
..++ .+++..+.....|....+|.....+++.+........+. +.+.......+.|+-..-|.++..++
T Consensus 403 -----~~Ln----~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l 471 (690)
T KOG1243|consen 403 -----RNLN----GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLAL 471 (690)
T ss_pred -----hhhc----HHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHH
Confidence 1122 245555555667888888888888888777653222111 11222333456777777888888888
Q ss_pred HHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000051 1910 GELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1910 ~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2612)
....+..... +...++|.+.-..-|++..+|..+..++...
T Consensus 472 ~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 472 AATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 7666655433 5667788777777788888888877766544
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=6.3 Score=59.57 Aligned_cols=310 Identities=12% Similarity=0.012 Sum_probs=169.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhchh-------hhhhHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhHHH
Q 000051 1890 LISSLASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2612)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l~~ 1961 (2612)
+...-.+++..++..|...|..++-++-+. +...++..+...+. ..+.++|..+..++..++...+ ..+..
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-~nIkS 1220 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-NNVKS 1220 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhc
Confidence 333334567778888888887777654321 33456665655444 4678999999999999887655 45667
Q ss_pred hHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------hhhhhhHHHHHHhccCC---CcchHHHHHHHHHhhh
Q 000051 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSV 2031 (2612)
Q Consensus 1962 ~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~-------~~~~~ilp~Ll~~L~~~---~~~~~al~~L~~il~~ 2031 (2612)
-++.+...+..+..+.++.+-..|...+..++..+-. ..+.+++..+.+--... +.+-.+++.|..+...
T Consensus 1221 GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 7889999998888888888888888877777654222 22333333332222222 2223444444432110
Q ss_pred cccccccccch-h-hccCCcchh-HHHHHHHHHHHh-CCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc
Q 000051 2032 RTTAVLPHILP-K-LVHLPLSAF-NAHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107 (2612)
Q Consensus 2032 ~~~~vlp~Lip-~-L~~~~~~~~-~~~al~~La~~~-g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~ 2107 (2612)
-.+.-+....+ . ...++.... ............ ......+.=.++-.|.+...+++.+||..|+..+-.++..++.
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 00000000000 0 000000000 000000000000 1111223333455555555688999999999998888876654
Q ss_pred ----cc----HHHHHHHHHhhcCC------------------------CCh--hHHHHHHHHHHHHHHhcccchhccHHH
Q 000051 2108 ----EG----VESLVSELLKGVGD------------------------NQA--SIRRSSAYLIGYFYKNSKLYLVDEAPN 2153 (2612)
Q Consensus 2108 ----~~----l~~ll~~Ll~~l~~------------------------~~~--~vR~~A~~~L~~l~~~~~~~~~~~~~~ 2153 (2612)
+. +..++-.++..++. ..| .+-..|+..+..++...=..+...+++
T Consensus 1381 ~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~ 1460 (1780)
T PLN03076 1381 LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKK 1460 (1780)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 33333344333321 011 233345555555554433445566777
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHH
Q 000051 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200 (2612)
Q Consensus 2154 il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l 2200 (2612)
++..|..++..+++.+...+..||..++...+...-+.....+.+++
T Consensus 1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076 1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 77777788888899999999999999998877655444444433333
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.23 Score=55.44 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh--Chh
Q 000051 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK-LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA--GKS 1957 (2612)
Q Consensus 1884 ~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~-~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~--~~~ 1957 (2612)
+.++|.+++.+.+.+.--|..|...+.+++.. .++. ++|++++.+.++|+..++++...++.+|..++.+. -++
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34556666677788888899999999999998 4444 57899999999999999999999999998874332 247
Q ss_pred hHHHhHhHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHhChhh
Q 000051 1958 QLLSFMDELIPTIRTALCD-----------SILEVRESAGLAFSTLFKSAGMQA 2000 (2612)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~D-----------~d~~Vr~~A~~al~~l~~~~g~~~ 2000 (2612)
.+.+|+.+++|.+....+. .+..+++....++..+-.+.|+++
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 7889999999998743321 234455555666666656656543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.18 Score=56.94 Aligned_cols=126 Identities=22% Similarity=0.309 Sum_probs=79.4
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHh
Q 000051 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~ 1584 (2612)
.-++.|++++||.+|+.++..+.+..+ +++ ..+ .+..... ..|... ...+..++-.+.++
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L-------~~A-e~~~~~~---------~sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGSK-PFL-------AQA-EESKGPS---------GSFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHccH-HHH-------HHH-HhcCCCC---------CCcccH--HHHHHHHHHHHHHH
Confidence 346789999999999999999987532 111 111 1111000 011111 12333344444443
Q ss_pred h-----cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000051 1585 L-----RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2612)
Q Consensus 1585 l-----~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~ 1650 (2612)
+ .+.+..+-....+++..+.......+--..+++.++..+...+.+.++++|..+..++|.+....
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 3 34466677778888888877533322234577888888889999999999999999999998753
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=95.16 E-value=4.7 Score=52.83 Aligned_cols=224 Identities=11% Similarity=0.104 Sum_probs=126.3
Q ss_pred CChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhc----CC-CChhHHHHHHHHHH
Q 000051 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGV----GD-NQASIRRSSAYLIG 2137 (2612)
Q Consensus 2066 ~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l----~~-~~~~vR~~A~~~L~ 2137 (2612)
.++.|+...++..|+..+..+....-+...+|+-+++....+ +....+++.|...+ ++ +||.--....++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 456778888888888877432212223344555555443322 33444555444443 44 57888888888999
Q ss_pred HHHHhccc----chhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc----cccccHHHHHH------------
Q 000051 2138 YFYKNSKL----YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK----EVQPSYIKVIR------------ 2197 (2612)
Q Consensus 2138 ~l~~~~~~----~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~----~~l~~lv~~l~------------ 2197 (2612)
.+.+.... .+..+-+.+++.+...+..+-.+....+++.++.++...+. +.+..+.+++.
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP 177 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP 177 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC
Confidence 88776432 23344566667777777666666777778888888877662 22223333321
Q ss_pred ---HHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhH
Q 000051 2198 ---DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG 2274 (2612)
Q Consensus 2198 ---~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~ 2274 (2612)
+.+...-.. +. ..+.-+..+.+++.+|...+.+...+ ..+...|..++...+.+.+.||+.+|+.
T Consensus 178 alvrLL~a~i~k------~~----~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~ 245 (435)
T PF03378_consen 178 ALVRLLQAYIKK------DP----SFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFT 245 (435)
T ss_dssp HHHHHHHHHHHH------HG----GG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHH
T ss_pred cHHHHHHHHHHh------Cc----hhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 111111000 00 00112356778899997777766544 4588999999999998899999999998
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000051 2275 PLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2275 pLi~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2612)
.+..-+...-.+..+..-+..++.++.
T Consensus 246 lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 246 LLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 888777654345444444444444433
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.7 Score=54.13 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=47.8
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchh--hhhh--HHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000051 1885 VLMNTLISSLA-SSSSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1885 ~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~--~l~~--llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2612)
.++..|++.+. +.++.+-..|+.=+|++++..+.+ ++.. .-..+.+.+.++|++||..|+.++..++.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555666663 556677788888899999887433 3221 33446677889999999999999988754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=5.4 Score=60.26 Aligned_cols=297 Identities=12% Similarity=0.098 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHh-ccC-------Ch-hHHHHHHH
Q 000051 2289 KSAILSTLSIIIRKGGIALKPFLPQLQT----TFIKCLQDSTRTVRSSAALALGKLSA-LST-------RV-DPLVGDLL 2355 (2612)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~lpqL~~----~~~k~L~d~~~~vR~~Aa~aLg~L~~-~~~-------~~-~~~l~~Ll 2355 (2612)
|...+.-|.+++..--..++-.-+.++. .|.+.-.+++..++.-|...|..+.. +-. ++ ..++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 5555666655554322233333345444 45554445567888888888888732 211 11 24566665
Q ss_pred Hhhh-cCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh----CC---hhHH
Q 000051 2356 SSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC----ME---DGQL 2427 (2612)
Q Consensus 2356 ~~l~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~----~~---~~~~ 2427 (2612)
..++ ..+.++|+.+++++..++...+.++.. -...|+..+.....++++.+-..+-+++..+... ++ .+.+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 5554 345799999999999999988776633 4456666666666677777767777777665432 22 2334
Q ss_pred HHHHHHHHhhcCCC-CchhhHHHHHHHHHH----HhhC-----C------------------cc---ccC----CchhHH
Q 000051 2428 ADLLQELLNLASSP-SWAARHGSVLVFATF----LRHN-----P------------------SA---ISM----SPLFLS 2472 (2612)
Q Consensus 2428 ~~~l~~ll~~~~~~-~~~~~~~~~~~l~~~----l~~~-----p------------------~~---~~~----~~~~~~ 2472 (2612)
..++.-+.+-.... +...--.++..|..+ .+.. + +. +.. ..+|-.
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 44443332211111 111111222222211 1100 0 00 000 135656
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhcc-CCCCchhhHH-HHHHHHhhcC------------------CCC---
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTTVVVD-ILASVVSALH------------------DDS--- 2529 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~-~~~~~~~l~~-~l~~~~~~l~------------------~~~--- 2529 (2612)
++..+.+.+.+++++||..|+..+-.++...+.. +++.+..+.. +|-+++..++ +++
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 6666667777889999999999999998877654 4444433322 3333322211 011
Q ss_pred -----HHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhc
Q 000051 2530 -----SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2612)
Q Consensus 2530 -----~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~ 2586 (2612)
.+.-..|+..+-.+-.+..+.+.+.|+.++-.+..|++..|..+-..+-.|+..++.
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 144455555555555566677888999999999999999988887776666666653
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.49 Score=57.80 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=116.7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHH------HHHHHHh
Q 000051 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL------VGDLLSS 2357 (2612)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~------l~~Ll~~ 2357 (2612)
.+.+-|..++.-|..++..++....-.--..+..++..+++++.++|..|+..+|..+.-.|.+... ++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 3567788899999999887765322111223455666899999999999999999998766655543 5667777
Q ss_pred hhc-CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhCChhH--HHHH-H
Q 000051 2358 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LADL-L 2431 (2612)
Q Consensus 2358 l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~--~~~~-l 2431 (2612)
+.. .+..+|..++.|+...|.+.......-..-.=+..|...+.+ .+...+..+..+++.+......+. +... +
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 754 346889999999999998865544333333336677778877 456677889999999987655432 1111 1
Q ss_pred HH-HHhhcCCCCchhhHHHHHHHHHHHhh
Q 000051 2432 QE-LLNLASSPSWAARHGSVLVFATFLRH 2459 (2612)
Q Consensus 2432 ~~-ll~~~~~~~~~~~~~~~~~l~~~l~~ 2459 (2612)
+. +..+....++..+..+..++...+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 11 12334445555566666666665544
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.83 E-value=22 Score=47.69 Aligned_cols=290 Identities=15% Similarity=0.075 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC
Q 000051 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2612)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2612)
...|..|+..|...+.......+. .+-...++++..++....|++++..+..+.++-.......-......+-..-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 467888888888888887776554 566677777777767788999988888888765431111111222222111112
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCC---------------------------ChhhHHHHHHHHHH
Q 000051 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2612)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~r~~a~~~L~~ 1484 (2612)
++-..|-.+..+|..=..++.. ....+.|.+...+... +-+.-..-+.++..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2222333332222211112211 1133444443333110 00000111222333
Q ss_pred HHhhCchhh-hhhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHh--hcCChhHhhHHHHHHhhcCCCCh--hHHHHHH
Q 000051 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPND--HTKYSLD 1558 (2612)
Q Consensus 1485 ia~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~--~~~~~~i~~ivp~Ll~~l~d~~~--~~r~al~ 1558 (2612)
+..-....+ ...+..++..++.++..+ ++..=..+...+..+.. .+++..+..++..|.....-.+- ..-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 332111111 233456666666665443 33334677777777765 44555667777777776433211 1113444
Q ss_pred HHHhccccccCChhhHhhHHHHHHHhh------cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHh--hhHHHHHHHhcC
Q 000051 1559 ILLQTTFVNTVDAPSLALLVPIVHRGL------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVD 1630 (2612)
Q Consensus 1559 ~L~~~~~~~~i~~~~l~~iip~L~~~l------~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d 1630 (2612)
.|..+. .+ ...+..+...+ ..++..+-+.|...++.+....+...-..-... .+++.+...+..
T Consensus 241 nL~~S~----~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 241 NLLKSH----LG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred HHHcCc----cH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 443311 11 22333444444 123567777888999887764322111111122 489999999987
Q ss_pred CCHHHHHHHHHHHHHHH-hhhCC
Q 000051 1631 PIPEVRSVAARAIGSLI-RGMGE 1652 (2612)
Q Consensus 1631 ~~~~VR~~A~~aL~~L~-~~~g~ 1652 (2612)
+++.|-......+..+. ..++.
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhhh
Confidence 77777667777776666 44443
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.82 E-value=15 Score=47.61 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHhhhCcch----hh--hhcHHHHHHHHHhC---CC---CHHHHHHHHHHHHHHHHHhc--ccch-h
Q 000051 1352 YGERRGAAFGLAGVVKGFGISS----LK--KYGIAATLREGLAD---RN---SAKRREGALLAFECLCEKLG--RLFE-P 1416 (2612)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~----l~--~~~i~~~L~~~i~~---~~---~~~~R~~Al~al~~L~~~~~--~~~~-~ 1416 (2612)
-..|..|...|.+..+...... +. -.-++.+++.-+.. ++ +.+.-..|+.+++.+..... ..+. .
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d 86 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDD 86 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChH
Confidence 3567777777777666443111 11 00223333332222 11 34455577777777663211 1121 2
Q ss_pred hHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhhcHH-----hHHhHHHHHHhhhcC--CChhhHHHHHHHHHHHHh
Q 000051 1417 YVIQMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSAQ-----GVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~--~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~ia~ 1487 (2612)
...-++...+..+.+++ ..+......++..- .+++. .+..++.. +..+.+ +.-.+-...+.++..+..
T Consensus 87 ~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~~-l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 87 FASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLAA-LHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHHH-HHHhhccCCchhHHHHHHHHHHHHHH
Confidence 22236666666776553 23333333333221 23332 22333332 222332 223444556777788888
Q ss_pred hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-hhHhhHHHHHHhhcCCCChhHHHHHHHHHhcccc
Q 000051 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2612)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2612)
..|+.+..+....+|.++..+-+....+|..|...+..+...++. ..+...+...++....+.
T Consensus 164 q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~---------------- 227 (372)
T PF12231_consen 164 QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG---------------- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc----------------
Confidence 889999888888888888888888999999988777776665542 233333333322211111
Q ss_pred ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCC-CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2612)
Q Consensus 1567 ~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~-~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2612)
.....+.+.+.+.+.++ +.-..+.++.+.+...++.+ -+--+++...+.....+++++++.+|..|..+...
T Consensus 228 -----~~~~~~~~~L~~mi~~~--~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~ 300 (372)
T PF12231_consen 228 -----KLIQLYCERLKEMIKSK--DEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRR 300 (372)
T ss_pred -----cHHHHHHHHHHHHHhCc--CCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 12223444444444442 11223445555555444443 23456788888889999999999999999999999
Q ss_pred HHhhhCCC
Q 000051 1646 LIRGMGEE 1653 (2612)
Q Consensus 1646 L~~~~g~~ 1653 (2612)
++.....+
T Consensus 301 liy~~~~~ 308 (372)
T PF12231_consen 301 LIYASNPN 308 (372)
T ss_pred HHHHhcCC
Confidence 99866543
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.1 Score=63.03 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---- 1454 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---- 1454 (2612)
-+..+.+.+.+++-.. . .|..++..+.......-..++..+.+.+-......++.+|.+|+-++..+....-..
T Consensus 396 av~~i~~~I~~~~~~~-~-ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-D-EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHHHHHHTT-S-H-H-HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHcCCCCH-H-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 3455666666543221 2 244445555544433233344444333322222356789999988888776632111
Q ss_pred ---------hHHhHHHHHHhhhc----CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCC---CHHHHHH
Q 000051 1455 ---------GVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSA 1518 (2612)
Q Consensus 1455 ---------~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~---~~~VR~a 1518 (2612)
..+.+++.+.+.+. ..+-..+..++.+||++.. +..++.+..++.+. ...+|.+
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 22455555555444 4455677888889988752 55667777777665 7789999
Q ss_pred HHHHHHHHHhhcCChhHhhHHHHHHhhcCCCCh--hHH-HHHHHHHh
Q 000051 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQ 1562 (2612)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~--~~r-~al~~L~~ 1562 (2612)
|++||..++...+ ..+.+.++....|+.+ .+| .|+..+..
T Consensus 544 Ai~Alr~~~~~~~----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 544 AIQALRRLAKHCP----EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHTTTTGGGT-H----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCc----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 9999998865543 3344444444444433 356 45555543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.05 Score=42.05 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
++|.+.+.++|++|+||..|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999874
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.63 E-value=26 Score=47.79 Aligned_cols=276 Identities=15% Similarity=0.118 Sum_probs=148.2
Q ss_pred CcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHh
Q 000051 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2224 p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~-~~~~vk~~al~~L~~L~~~ 2302 (2612)
|-++++.+|.+++++.++ +.-.++...+..+++.+. ..+.||..++...+-.++... .....+..++..+|.+...
T Consensus 544 P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 544 PMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred CcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 678889999999999744 344567777999998886 889999999877666666532 3456788899999988876
Q ss_pred cC-CCccCchHHHHHHHHH----HhcCC--CHHHHHHHHHHHHHHHhcc--------------CC----------hhHHH
Q 000051 2303 GG-IALKPFLPQLQTTFIK----CLQDS--TRTVRSSAALALGKLSALS--------------TR----------VDPLV 2351 (2612)
Q Consensus 2303 ~~-~~l~p~lpqL~~~~~k----~L~d~--~~~vR~~Aa~aLg~L~~~~--------------~~----------~~~~l 2351 (2612)
.. ...-.|+-+|+..++. ++... +++-+.+.+.-++.+..+- |- +-.+.
T Consensus 621 ~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~ 700 (982)
T KOG2022|consen 621 LKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVL 700 (982)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHH
Confidence 54 2222355555554443 32322 4555666666566553321 10 11122
Q ss_pred HHHHHhhhc------CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHhh--C
Q 000051 2352 GDLLSSLQV------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASIL-GIMSQC--M 2422 (2612)
Q Consensus 2352 ~~Ll~~l~~------~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~L-g~L~~~--~ 2422 (2612)
.+++..++. .+.++-+..+..+..-+...+..+..++.+.+..++........-..-...+.|+ ...... .
T Consensus 701 ~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~ 780 (982)
T KOG2022|consen 701 QKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCK 780 (982)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhcccccc
Confidence 233332221 2344555555444444444555566788899998888754433221111111111 111110 0
Q ss_pred C--hhHHHHHHHHHH---hhcC-CCCchhhHHHHHHHHHHHhhCCccccC--CchhHHHHHHHHhhhccCChhHHHhHHH
Q 000051 2423 E--DGQLADLLQELL---NLAS-SPSWAARHGSVLVFATFLRHNPSAISM--SPLFLSILDRLKSSLKDEKFPLREASTK 2494 (2612)
Q Consensus 2423 ~--~~~~~~~l~~ll---~~~~-~~~~~~~~~~~~~l~~~l~~~p~~~~~--~~~~~~i~~~l~~~~~~~~~~ir~~a~~ 2494 (2612)
| ...+...+++.+ +... .++.......+..+..+++..|.-... .++..-+..+....+.+..+..-+++..
T Consensus 781 ~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~q 860 (982)
T KOG2022|consen 781 PLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQ 860 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 0 012333333321 1111 344444444555777788888765432 2222223446666777766554444444
Q ss_pred HHHHHHhh
Q 000051 2495 ALGRLLLH 2502 (2612)
Q Consensus 2495 alg~ll~~ 2502 (2612)
=+..++..
T Consensus 861 F~t~~~~~ 868 (982)
T KOG2022|consen 861 FLTALATY 868 (982)
T ss_pred HHHHHHhh
Confidence 44444443
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.63 E-value=23 Score=47.18 Aligned_cols=343 Identities=15% Similarity=0.174 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhc
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALK 1667 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~-~g~~~~~~ll~~L~~~L~ 1667 (2612)
++++-..+.+++|...+.+.- .-+. -+..++.+.+.++ ..++|.+|..|+-+++.. +.+-.--.++..+...+.
T Consensus 206 npgl~~~cLdc~g~fVSWIdI-nLIa--Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDI-NLIA--NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhh-hhhh--chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 778888888888887765422 1111 2346667777766 578999999999888763 332211123333322211
Q ss_pred -----cCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhc-cCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHH
Q 000051 1668 -----SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2612)
Q Consensus 1668 -----~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~-~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ 1741 (2612)
+.+. .+-...-..++.++.++|.+.. .+.+.+ +..+...++.+.. -+..++|.
T Consensus 281 lfg~~s~dq-~~d~df~e~vskLitg~gvel~-----~i~s~lnseld~~~kqn~l~---------------~ll~~vpy 339 (980)
T KOG2021|consen 281 LFGYHSADQ-MDDLDFWESVSKLITGFGVELT-----IIISQLNSELDTLYKQNVLS---------------ILLEIVPY 339 (980)
T ss_pred HHhhhcccc-ccCchHHHHHHHHHhhcceeee-----hhHhhhhhccCHHHHHHHHH---------------HHHHHHHH
Confidence 1110 0112233446667777776522 111111 2224444443322 23347788
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC-CCC
Q 000051 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG-GSD 1820 (2612)
Q Consensus 1742 ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~-~~d 1820 (2612)
+++.+.|+++++-......+...+..+... + .+.+++ ++-.. ..+-....++.-....-..++ .++
T Consensus 340 llq~l~~e~ddit~~ifpFlsdyl~~LKkl------~----~ls~~q-k~~l~--~illai~kqicydemy~nddn~tg~ 406 (980)
T KOG2021|consen 340 LLQFLNNEFDDITAKIFPFLSDYLAFLKKL------K----ALSSPQ-KVPLH--KILLAIFKQICYDEMYFNDDNVTGD 406 (980)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhhc------c----cccchh-hccHH--HHHHHHHHHHhccHHhhcccCCCCc
Confidence 888888887776555444444333221110 0 011110 00000 011111111100000000000 011
Q ss_pred CCccchHHHHHHH---HHHh---ChhhH----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhH--------H--
Q 000051 1821 DEGASTEAHGRAI---IEVL---GRDKR----NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--------K-- 1880 (2612)
Q Consensus 1821 dd~~~~~~~~~~l---~~~L---g~~~~----~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l--------~-- 1880 (2612)
|+++.-++.++.+ .+.+ .++.+ .+.++.-.+.....+|..-+.|+..+-.+.+..+... .
T Consensus 407 EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~ 486 (980)
T KOG2021|consen 407 EEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTS 486 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHH
Confidence 1111122232222 2222 22211 1223333334567788999999998888877554211 0
Q ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHh---c--hhhhhhHHHHHh--hhcCCCChhHHHHHHHHHHHHH
Q 000051 1881 EIMPVLMNTLISS--LASSSSERRQVAGRALGELVRKL---G--ERVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVM 1951 (2612)
Q Consensus 1881 ~~l~~ll~~L~~~--L~~~~~~~R~~A~~aL~~lv~~~---~--~~~l~~llp~L~--~~L~d~~~~vR~~a~~aL~~li 1951 (2612)
..+..+++.++.. .+.+++.+ ...-+..+++.. . +...|.++..+. ++++..+..||..+.+.+...+
T Consensus 487 ~vl~~~~~ll~tsqv~~h~h~lV---qLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfV 563 (980)
T KOG2021|consen 487 QVLFLNELLLMTSQVLAHDHELV---QLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFV 563 (980)
T ss_pred HHHHHHHHHHHHcccccCCchHH---HHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHH
Confidence 1122233333221 22344444 444444444432 1 123455555554 3778889999999999988887
Q ss_pred HhhChhhHHHhHhHHHHHHHHHh
Q 000051 1952 ASAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1952 ~~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
.... ..+.+|.+.++..+...|
T Consensus 564 KlLk-kqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 564 KLLK-KQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 7653 466778888888888777
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.6 Score=57.30 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHhHHhHHH-HHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHHHHhhhhcC
Q 000051 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTD 1510 (2612)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~~v~~ilp-~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp~L~~~L~D 1510 (2612)
-..|-.|..+++.++..++......+.. .+...|.+...-.|..+..++..++......-... .+.+.+.|..+|++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 3567889999999999998888877776 48888998888889999999999997644321111 34555666666663
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.55 Score=55.76 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=108.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH---HhHHHH
Q 000051 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPS 1462 (2612)
Q Consensus 1386 ~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v---~~ilp~ 1462 (2612)
.+.++ ||...-.++..+..+++.-++.+.+.+..++..+.+.+++....|-++|+.++..+++.+..... +.++-.
T Consensus 96 ~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 96 KLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred HhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445 79999999999999999888888899999999999999999999999999999999998876643 333333
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000051 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2612)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2612)
|+..-..++-.++..|-.+|.+|.++...+ .+++.|..++++.++.+|..++.+.......++
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 333334556788999999999998865432 345666667889999999999988776665553
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.7 Score=53.49 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=103.8
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHhc-Chhh----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch---
Q 000051 1847 AALYMVRSDVSLSVRQAALHVWKTIVAN-TPKT----LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--- 1918 (2612)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~-~~~~----l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~--- 1918 (2612)
+-+|..+.-.+..||..|+.++-.+..- .|.. ...+++.=...+.+.|.|+.+.+|..|...+..+...+-+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 3456678888999999999998777652 2333 2334444455778889999999999999888887766543
Q ss_pred -hhhhhHHHHHhhhc-CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1919 -RVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1919 -~~l~~llp~L~~~L-~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
.++-.++..+..-+ .|...+||..+..+|..++.. ..--+.++.++|.+...+.|....||-++...+..+-
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33334444333333 366779999999999887643 2334567888999999999999999999887776653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.75 Score=62.15 Aligned_cols=218 Identities=21% Similarity=0.181 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHhccCCh------hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHhh
Q 000051 2328 TVRSSAALALGKLSALSTRV------DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLV 2400 (2612)
Q Consensus 2328 ~vR~~Aa~aLg~L~~~~~~~------~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~-~~~~~i~~~L~~~l 2400 (2612)
.=|.+|...||++..++|-. -.++|-.++.++++..++|-...--+..|+..- ..... -..+.........+
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEe
Confidence 34778888999987766531 246888899999888888887766666666432 22211 11111111111222
Q ss_pred cC---CCHHHHHHHHHHHHHHHhhCChhHHH----HHHHHHHhhcCC-CCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2401 YH---DDDHVRVSAASILGIMSQCMEDGQLA----DLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2401 ~~---~~~~vr~~aa~~Lg~L~~~~~~~~~~----~~l~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
.+ -+++-|.++|-.|..++..++-.+-. +++.--+..+.+ +.+..|+-...+|+.+-.+.+.+-. .+..+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw-~G~r~~ 642 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARW-SGRRDN 642 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhh-cccccc
Confidence 22 14689999999999999887754311 111111222233 3677888888899888777765533 233344
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCc-------------hhhHHHH----HHHHhhcCCCCHHHHHH
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT-------------TVVVDIL----ASVVSALHDDSSEVRRR 2535 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~-------------~~l~~~l----~~~~~~l~~~~~~vr~~ 2535 (2612)
..+.+...+.+.-|+||.+|+-|+|.++.......++.. ......+ ..++..++|.++=||..
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 556677778888999999999999999986321100000 0012222 36777789999999999
Q ss_pred HHHHHHHHHhhC
Q 000051 2536 ALSALKSVAKAN 2547 (2612)
Q Consensus 2536 a~~~l~~~a~~~ 2547 (2612)
.+..+...+..+
T Consensus 723 v~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 723 VVVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHHhh
Confidence 888877766543
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.06 E-value=26 Score=45.43 Aligned_cols=242 Identities=17% Similarity=0.220 Sum_probs=135.5
Q ss_pred chhhHhhhHHHHHHHhcC------C-CHHHHHHHHHHHHHHHhh------hCCCCchhhHHHHHHHhccCCCH-HHHHHH
Q 000051 1613 MIPYIGLLLPEVKKVLVD------P-IPEVRSVAARAIGSLIRG------MGEENFPDLVSWLLDALKSDNSN-VERSGA 1678 (2612)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d------~-~~~VR~~A~~aL~~L~~~------~g~~~~~~ll~~L~~~L~~~~~~-~~R~~a 1678 (2612)
+...++.++..+..-+.. + +.++-..|.+++|.+... +.++...-++......+.+.... ......
T Consensus 33 l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~ 112 (372)
T PF12231_consen 33 LQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHY 112 (372)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344455555555544433 2 667778999999888742 33333333666666666554432 222222
Q ss_pred HHHHHHHHHHhChhhH-----HhHhHHHHHhccC--CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1679 AQGLSEVLAALGTVYF-----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1679 a~~L~~i~~~~g~~~l-----~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
..+++. ..++...+ +.++.. +..+.+ ++..+-...+.++..+...++..+..+...-+|.++..+-+...
T Consensus 113 l~~ls~--Q~f~~~~~~~~~~~~l~~~-l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k 189 (372)
T PF12231_consen 113 LWCLSD--QKFSPKIMTSDRVERLLAA-LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK 189 (372)
T ss_pred HHHHHc--CCCCCcccchhhHHHHHHH-HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 222222 22333322 222222 222222 23444456677888888888887777777778888888778888
Q ss_pred hHHHHHHHHHHHHHHHhhhc-hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHH
Q 000051 1752 SVRDAALGAGHVLVEHYATT-SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~-~i~~-llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~ 1829 (2612)
.+|..|...+..+...++++ .+.. +.+.+...+.++ +....-++-+..++. +.++....-+.
T Consensus 190 ~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~--------------~~~~~~~a~~i 253 (372)
T PF12231_consen 190 DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIK--------------SKDEYKLAMQI 253 (372)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHh--------------CcCCcchHHHH
Confidence 89998877776666555543 1222 222222222222 434433444444431 10122222334
Q ss_pred HHHHHHHhCh------hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1830 GRAIIEVLGR------DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1830 ~~~l~~~Lg~------~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
+..++-.+|. ++.++.+...-.|.++.+..+|..|..+|+.++-
T Consensus 254 W~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 254 WSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555555553 3556677777778899999999999999999886
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.51 Score=52.73 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCCh----------------------------------hHH-----H
Q 000051 2312 PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRV----------------------------------DPL-----V 2351 (2612)
Q Consensus 2312 pqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~~----------------------------------~~~-----l 2351 (2612)
|+|.+.+++.+..+ ++.+|..+.++||.|..++|.. +.+ +
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi 88 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVI 88 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHH
Confidence 89999999999886 8999999999999996544321 111 2
Q ss_pred HHHHHhhhcCC-HHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2352 GDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2352 ~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
..|+..++++. ..-...+++|+-.++...|.+. .++.+.+++.+...++..++..|+..-.-|+.|..
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33444444433 3445566777777776666665 67777777777777776666667666666665553
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=93.99 E-value=1 Score=50.75 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcc-cchhccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhh
Q 000051 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2108 ~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~-~~~~~~~~~il~~L~~ll~d~d-~~V~~~a~~aL~~l~~~ 2183 (2612)
..++.+...+.+.+.++++..|-.++..++..++..+ +-+..+...+++.++..++.++ ..+...+..++..++..
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999999999999999874 4466888999999999998655 46677888888887653
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.3 Score=57.45 Aligned_cols=149 Identities=26% Similarity=0.386 Sum_probs=112.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCC----cchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-
Q 000051 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK----DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM- 1650 (2612)
Q Consensus 1576 ~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~----~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~- 1650 (2612)
..-|.+-|+++-++.+||..|+..+-++.... +|+ ++...++.=...+..+|.|+.|.||..|...+..+...+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999998887653 442 334445555567888899999999999999887776543
Q ss_pred ---CCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhh
Q 000051 1651 ---GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2612)
Q Consensus 1651 ---g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~-~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~ 1725 (2612)
++..+.+++..+.+.+..++...+|.....|+..++.. ..-..++.++|.+-..+.+....||-++..++..+-.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 33455677777777877777778999999998887643 2223567788877777888899999888887766643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.53 E-value=2.5 Score=57.47 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=106.9
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHH-HHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhch--
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL-MNTLISSLAS---SSSERRQVAGRALGELVRKLGE-- 1918 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~l-l~~L~~~L~~---~~~~~R~~A~~aL~~lv~~~~~-- 1918 (2612)
+++.+.+.+.....+.|..-+-+|..+..-.+..-.+.+..- -...+..+.+ -+++.|.+|+-.|+.+++...-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 445555566777888899889999888776554322222210 0011111222 2468999999999999987532
Q ss_pred h--hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 000051 1919 R--VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1919 ~--~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~ 1995 (2612)
. .-..++.+....++| +.+-.|+=.|.+||.+-+..........-......+...+.|+-++||.+|.-||+++..+
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 2 345777788888887 4788999999999999887665544434455667778889999999999999999999875
Q ss_pred h
Q 000051 1996 A 1996 (2612)
Q Consensus 1996 ~ 1996 (2612)
.
T Consensus 673 ~ 673 (1387)
T KOG1517|consen 673 G 673 (1387)
T ss_pred c
Confidence 4
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.6 Score=57.22 Aligned_cols=77 Identities=26% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcC
Q 000051 1900 ERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD 1976 (2612)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D 1976 (2612)
..|..|+++||.++...+......+.. .|..+|+++....|..++..+.+...........+..+.+.+.+...|.+
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 468899999999999987766655554 68889999999999999998888876554322221134566666666663
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.08 E-value=39 Score=44.68 Aligned_cols=183 Identities=15% Similarity=0.264 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhhccCC-------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHH
Q 000051 1591 ETKKKAAQIVGNMCSLVTE-------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 1663 (2612)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~-------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~ 1663 (2612)
..|+..+.++.+++..+-. .++...|++.++..+...+++.+..+|-.+++.++.++..+|...-..+++ +.
T Consensus 211 ~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii 289 (993)
T COG5234 211 ALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-II 289 (993)
T ss_pred HHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HH
Confidence 4555566677776654321 123456788888888888888899999999999999988887543333333 11
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhcc--CCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHH
Q 000051 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2612)
Q Consensus 1664 ~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~--~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ 1741 (2612)
+.... .. ++..+.+.|. ..++.+-.+++..++ ++...+-+...-+ +.|.
T Consensus 290 ~~~~e--n~------------------------~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~i 340 (993)
T COG5234 290 ELMTE--NM------------------------FLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPI 340 (993)
T ss_pred Hhccc--cc------------------------chhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhh
Confidence 11100 00 0011111111 123333334444443 4444443322222 5555
Q ss_pred HHhhcCCCCh--------hHHHHHHHHHHHHHHHhhhchhhh----hHHHHh-hccCCCchHHHHHHHHHHHHHH
Q 000051 1742 ILDGLADENE--------SVRDAALGAGHVLVEHYATTSLPL----LLPAVE-DGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1742 ll~~L~d~~~--------~VR~~Al~al~~lv~~~~~~~i~~----llp~L~-~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
+.+++..+.+ .||+++.-.++.+...++....+. +.--+. ..++|+.-.+|.++...+-+.+
T Consensus 341 I~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 341 IEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred eccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 6666664332 478887766677666665554433 333333 3789999999998887776665
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=93.07 E-value=5.9 Score=54.97 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc------
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS------ 1452 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~------ 1452 (2612)
-+.++.+.+.+++- ... .+..++..+.......-..++..+++.+-.-..-+++.+|..|+-++..+....-
T Consensus 358 a~~~i~~~i~~~~~-~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 358 ALKFIKQWIKNKKI-TPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHcCCC-CHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45556666766531 122 2333344444443332333444443333222223467899999888887765321
Q ss_pred -HHhHHhHHHHHHhhhc----CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhc---CCCHHHHHHHHHHHH
Q 000051 1453 -AQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTALQ 1524 (2612)
Q Consensus 1453 -~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~---D~~~~VR~aA~~aL~ 1524 (2612)
...+..++|.+.+.|. +.+-..+...+.+||++.. +..++.+...+. +..+.+|.+|++||.
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALR 505 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 1123566676666554 2344456667888887653 333444444443 345789999999999
Q ss_pred HHHhhcCChhHhhHHHHHHhhcCCCC--hhHH-HHHHHHHh
Q 000051 1525 QVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQ 1562 (2612)
Q Consensus 1525 ~l~~~~~~~~i~~ivp~Ll~~l~d~~--~~~r-~al~~L~~ 1562 (2612)
.++...+. .+.+.++....|+. ..+| .|+..+..
T Consensus 506 ~~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 506 NLAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 98875542 33344444444433 3456 45555543
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.07 E-value=66 Score=47.03 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=102.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCE--KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~--~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~ 1455 (2612)
.++..+.+...+...|++|.+++..+..+.- .++ .++....++-..+...+.|....||+.|+.++..++..-.-..
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 5677777666666689999988777666542 344 4566777888888999999999999999999887765211111
Q ss_pred HHhHHHHHHhhhc--CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 000051 1456 VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1456 v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2612)
+............ +.+--..|+|+..||+++-..|-.+...+|+.+..+.....|+ ..++.++-+++..|-..-
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 1111112222222 2233457899999999998888877666666666665555665 667888888888776544
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=93.04 E-value=22 Score=46.10 Aligned_cols=295 Identities=16% Similarity=0.051 Sum_probs=144.0
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHhhCchh-hhhhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcCChh--H-h
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPE--I-A 1536 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~--i-~ 1536 (2612)
+++..|..++|.+...++.+|..++...+.. ....++.+++.+...+..+ +...+..|++||..+...-.-.. + .
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 3444667789999999999998887544332 1223344555566666543 46667778888888765321111 1 2
Q ss_pred hHHHHHHhhcCCCChhHH------HHHHHHHhccccccCCh-hhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhccC
Q 000051 1537 SLVPTLLMGLTDPNDHTK------YSLDILLQTTFVNTVDA-PSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVT 1608 (2612)
Q Consensus 1537 ~ivp~Ll~~l~d~~~~~r------~al~~L~~~~~~~~i~~-~~l~~iip~L~~~l~d~-s~~vr~~a~~~l~~l~~~~~ 1608 (2612)
..++.|...+.......+ .|+..+ +|...... -.-..++|.+...+++. ..++-+.+..++.|+...-.
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL---SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLL---TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHH---hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 245555555543221222 233333 34432111 11135777777776553 34666777788888876422
Q ss_pred CCCcchhhHh-----hhHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhccCCCHHHHHHHH
Q 000051 1609 EPKDMIPYIG-----LLLPEVKKVLVD---PIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2612)
Q Consensus 1609 ~~~~l~~~l~-----~ll~~L~~~L~d---~~~~VR~~A~~aL~~L~~~~g~~-~~~~ll~~L~~~L~~~~~~~~R~~aa 1679 (2612)
+...-..+.. .+.+.+ +.|.. .++++.+..-..-..+-+.+.+- .|++....+....-.-.+. .+...
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l-~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~-H~se~- 338 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTL-QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV-HKSEK- 338 (429)
T ss_pred ccchhhhHHHHHHHcChHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC-CCCch-
Confidence 1110111111 222222 22222 24444433322222222222110 2333333332221111111 11111
Q ss_pred HHHHHHHHHhChhhHHhHhHHHHHhcc-CCChhhHhHHHHHHHHhhhhhcc--chhhhHHhHHHHHHhhcCCCChhHHHH
Q 000051 1680 QGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDA 1756 (2612)
Q Consensus 1680 ~~L~~i~~~~g~~~l~~llp~l~~~~~-~~~~~vR~~~~~~l~~L~~~~g~--~f~p~l~~iip~ll~~L~d~~~~VR~~ 1756 (2612)
-+.+-+..+..+. -+++..+.+.+. +.++.+-.-++.=++.+++..+. ....-++ .-..+++.+.+++++||..
T Consensus 339 -FW~EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 339 -FWRENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred -HHHHHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHH
Confidence 1112222222221 123444455442 34566666677778888877643 2211111 4567888899999999999
Q ss_pred HHHHHHHHH
Q 000051 1757 ALGAGHVLV 1765 (2612)
Q Consensus 1757 Al~al~~lv 1765 (2612)
|+.|...++
T Consensus 416 AL~avQklm 424 (429)
T cd00256 416 ALLAVQKLM 424 (429)
T ss_pred HHHHHHHHH
Confidence 999988764
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.03 E-value=45 Score=45.03 Aligned_cols=190 Identities=16% Similarity=0.194 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHH
Q 000051 1753 VRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2612)
Q Consensus 1753 VR~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~ 1828 (2612)
=|..|.+++..+.+.|... +.+.++..|.+--.|. .+-..+++.+-.++.+ +. .+ ...|++...++
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~--E~ik~~LdTl~il~~~-----dd--~~-~v~dds~qsdd 108 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDP--EIIKYALDTLLILTSH-----DD--SP-EVMDDSTQSDD 108 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCH--HHHHHHHHHHHHHHhc-----Cc--ch-hhcccchhhhH
Confidence 3788888988888776443 3444444444322221 1222233333322211 00 00 00011112334
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHhcCCCHHHHHHH
Q 000051 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI---MPVLMNTLISSLASSSSERRQVA 1905 (2612)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~---l~~ll~~L~~~L~~~~~~~R~~A 1905 (2612)
.+..+.+.+-. ..+.+..+...+...+..||..+++.+.++..+.|..++.. .|.-+..++..+.|..+.+|..+
T Consensus 109 ~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred HHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 44445554421 12344555555677788999999999999999998777664 47778888999999999999999
Q ss_pred HHHHHHHHHHhchh--------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1906 GRALGELVRKLGER--------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1906 ~~aL~~lv~~~~~~--------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
.-.|.++++..+.- ++..++.++.+-=.....-|-..+...+-.++...
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 99999999876542 23444444443111111123344555556665544
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.2 Score=51.98 Aligned_cols=111 Identities=15% Similarity=0.239 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH-----hcCCCCH-----hHHHHHHHHHHHHHHhcCCCccCchHHHHH
Q 000051 2247 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-----IGDRFPW-----QVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316 (2612)
Q Consensus 2247 ~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~-----l~~~~~~-----~vk~~al~~L~~L~~~~~~~l~p~lpqL~~ 2316 (2612)
.........+.+... --+.||+.++.+.++.. ++.. +. .+|..|...++..+.+.+...+..-|.+.+
T Consensus 254 tTv~~m~~sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~-p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtr 331 (450)
T COG5095 254 TTVVMMYSSLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNV-PDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTR 331 (450)
T ss_pred HHHHHHHHHHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHH
Confidence 344555556665543 34678887777665543 3322 22 378889999999999999988888999999
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHh------ccCChhHHHHHHHHhhh
Q 000051 2317 TFIKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQ 2359 (2612)
Q Consensus 2317 ~~~k~L~d~--~~~vR~~Aa~aLg~L~~------~~~~~~~~l~~Ll~~l~ 2359 (2612)
+++|.+-|. .....-.|.+++..+.. +.|+.+.+...+-+.+.
T Consensus 332 TllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 332 TLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 999998885 46677778888887722 35677666555544443
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.96 Score=50.57 Aligned_cols=146 Identities=17% Similarity=0.241 Sum_probs=89.4
Q ss_pred hchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhh-HHHHHHhhc-CCCChhHHHHHHHHH-hccccccCChh
Q 000051 1497 LPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGL-TDPNDHTKYSLDILL-QTTFVNTVDAP 1572 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~-ivp~Ll~~l-~d~~~~~r~al~~L~-~~~~~~~i~~~ 1572 (2612)
+|.+++.+++.++. .+..+|.++.++||.+|.. +|+.-. +....-... .+.+. .+.+... ........++-
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSND---ESTDISLPMMGISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccc---cchhhHHhhccCCCchHHH
Confidence 57888888888854 4689999999999999864 343211 111000000 00011 1111110 00011112223
Q ss_pred hHhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1573 SLALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~-~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
+...++..+.+.++|++- .-...+.+++..+.+..+. + -.+|+++++|.+...+....+..|+.....|+.++..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~-~-cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL-K-CVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-C-chhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 334566777777777643 3344577777777765443 3 3899999999999999987789999999999888764
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.3 Score=56.22 Aligned_cols=88 Identities=27% Similarity=0.355 Sum_probs=60.0
Q ss_pred HHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHH
Q 000051 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWL 1662 (2612)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~----------d~~~~VR~~A~~aL~~L~~~~g~~~---~~~ll~~L 1662 (2612)
..+.+..|... ..-.+.+|+..++|.+..++. +..|.+|..|+..++.++..++..+ .+.++..+
T Consensus 237 lm~~v~ALl~N--~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl 314 (343)
T cd08050 237 LMRMVRALLDN--PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTL 314 (343)
T ss_pred HHHHHHHHhcC--CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 33444444432 223578999999999998873 4678999999999999999998763 24455555
Q ss_pred HHHhccCC-CHHHHHHHHHHHHHH
Q 000051 1663 LDALKSDN-SNVERSGAAQGLSEV 1685 (2612)
Q Consensus 1663 ~~~L~~~~-~~~~R~~aa~~L~~i 1685 (2612)
.+.+.+.. +.....|+..+++.+
T Consensus 315 ~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 315 LKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHcCCCCCcchhhHHHHHHHHh
Confidence 55555544 333466777777654
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.58 E-value=55 Score=44.89 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcC-CCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHH
Q 000051 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 2131 (2612)
Q Consensus 2053 ~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~ 2131 (2612)
++.++-++++.+=.+ .......+|.+++.|. .+...+|....-+++.++.++. ..++.++|.+...++|+++-+|..
T Consensus 948 ra~~vvTlakmcLah-~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-am~d~YiP~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAH-DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-AMTDRYIPMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-HHHHHhhHHHHHHhcCchHHHHHH
Confidence 344555666532110 1234457888888885 3456677766666666655432 235678999999999999999999
Q ss_pred HHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc-cccccHHHHH
Q 000051 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK-EVQPSYIKVI 2196 (2612)
Q Consensus 2132 A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~-~~l~~lv~~l 2196 (2612)
++-.|..+.+. ++..+...++-.++..+-|.++++|.-|-..++.+...-.+ -....+++.+
T Consensus 1026 t~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1026 TIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred HHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 99999988763 45555566665555666689999999999999998876443 3333444433
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.31 E-value=47 Score=43.48 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=101.1
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC-----h---hhHHHHHHHHHHHHHHHhcCCC------------HHHH
Q 000051 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SERR 1902 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-----~---~~l~~~l~~ll~~L~~~L~~~~------------~~~R 1902 (2612)
-.++..+..+......+|-+.....|-.+.... . ..|++|+..++..+.....-+. .+.|
T Consensus 290 l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR 369 (559)
T KOG2081|consen 290 LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFR 369 (559)
T ss_pred hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHH
Confidence 345555666667777899999999998876521 1 3468888899998888776322 2457
Q ss_pred HHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcC--CcH
Q 000051 1903 QVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--SIL 1979 (2612)
Q Consensus 1903 ~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D--~d~ 1979 (2612)
......+.++..-.|.. .+..+.-.+.+ ...+|+.-.++...+..++.+..+. -.+++|.+.+.++. ...
T Consensus 370 ~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~ 442 (559)
T KOG2081|consen 370 LKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQA 442 (559)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccch
Confidence 77777887777777764 34443333333 3467888889998888877665543 35677777777653 233
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 000051 1980 EVRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1980 ~Vr~~A~~al~~l~~~~g 1997 (2612)
.+|..+..-+|.+.+.+.
T Consensus 443 ~~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 443 PLRYTSILLLGEYSEWVE 460 (559)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 488888888888877654
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=92.31 E-value=20 Score=44.55 Aligned_cols=219 Identities=20% Similarity=0.178 Sum_probs=140.5
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHh-hhCc-chh-hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-c
Q 000051 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFGI-SSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-R 1412 (2612)
Q Consensus 1337 ~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~-~lg~-~~l-~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~-~ 1412 (2612)
.-++..++.....++|..-..+..-|....+ .... ..+ ....+...|.+++...-..-+-.-|+..++.+.+..| +
T Consensus 10 ~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~ 89 (307)
T PF04118_consen 10 AEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD 89 (307)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 3445555555555667766555555555555 2111 111 1225677788888776555666689999999999988 3
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
.+...+.-..|.++..+......||-.-.......+-.+++. ..+.++..++.+++++.-.....+..++..+....
T Consensus 90 ~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v 169 (307)
T PF04118_consen 90 GLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV 169 (307)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc
Confidence 455555566788888888888899988888887776666663 23555566667788777777777788888777653
Q ss_pred chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC---------------ChhHhhHHHHHHhhcCCCChhH-
Q 000051 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT- 1553 (2612)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---------------~~~i~~ivp~Ll~~l~d~~~~~- 1553 (2612)
... .++..+..++- ++|.+|..|..-+..-..... .++..-++..+...+.|++.-+
T Consensus 170 ~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVq 242 (307)
T PF04118_consen 170 GDK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQ 242 (307)
T ss_pred Chh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHH
Confidence 322 23333444443 478888888776553322221 1233446778888888887665
Q ss_pred HHHHHHHHh
Q 000051 1554 KYSLDILLQ 1562 (2612)
Q Consensus 1554 r~al~~L~~ 1562 (2612)
|.+++.+..
T Consensus 243 R~~LDlLl~ 251 (307)
T PF04118_consen 243 RGFLDLLLS 251 (307)
T ss_pred HHHHHHHHH
Confidence 467787764
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=92.07 E-value=26 Score=42.12 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=122.7
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHH
Q 000051 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2612)
Q Consensus 2275 pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L 2354 (2612)
.|+..++...+++.....+.+|..++..-. ...|.+..++......++...+..+...+..+...+++.-+++..+
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~ 79 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPL 79 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 344445666688888999999999887531 3456666666666666677777777777787777667665666666
Q ss_pred HHhh--h------c--CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhCC
Q 000051 2355 LSSL--Q------V--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCME 2423 (2612)
Q Consensus 2355 l~~l--~------~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2612)
+..+ + + ...+...+...+++.++...+. ....++..|...+ .+.++..+..+.+.+..++...-
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 5551 1 1 1245556666788888887544 4455566666666 67788888888888888883211
Q ss_pred hhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccC----CchhHHHHHHHHhhhccCChhHHHh
Q 000051 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLREA 2491 (2612)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~----~~~~~~i~~~l~~~~~~~~~~ir~~ 2491 (2612)
- ++.+..+-+......+. |-.....++.++.--|...++ ..+..+++..+++.....+......
T Consensus 155 v-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~ 222 (234)
T PF12530_consen 155 V-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQ 222 (234)
T ss_pred c-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHH
Confidence 1 23333333333332222 323334455554333322221 3455667888888777666433333
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=91.85 E-value=3.6 Score=57.79 Aligned_cols=207 Identities=18% Similarity=0.183 Sum_probs=101.4
Q ss_pred HHHHHHhhhcC--CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--CChhH
Q 000051 2351 VGDLLSSLQVS--DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC--MEDGQ 2426 (2612)
Q Consensus 2351 l~~Ll~~l~~~--d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~--~~~~~ 2426 (2612)
+..+.+.+... ....|...++||..+ |. .+....+.+.|. ..+..- ..++..+..+... .|..+
T Consensus 364 L~~l~~~~~~~~~~~~~r~~~lDal~~a----GT---~~av~~i~~~I~----~~~~~~-~ea~~~l~~l~~~~~~Pt~e 431 (618)
T PF01347_consen 364 LEELYKQLKSKSKKEQARKIFLDALPQA----GT---NPAVKFIKDLIK----SKKLTD-DEAAQLLASLPFHVRRPTEE 431 (618)
T ss_dssp HHHHHHHHTTS---HHHHHHHHHHHHHH-----S---HHHHHHHHHHHH----TT-S-H-HHHHHHHHHHHHT-----HH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHc----CC---HHHHHHHHHHHH----cCCCCH-HHHHHHHHHHHhhcCCCCHH
Confidence 44444554433 345566666665544 33 233344444433 322111 1244555554433 45444
Q ss_pred HHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHhh-CCc-----------cccCCchhHHHHHHHHhhhccCChhHHHhHH
Q 000051 2427 LADLLQELLNL-ASSPSWAARHGSVLVFATFLRH-NPS-----------AISMSPLFLSILDRLKSSLKDEKFPLREAST 2493 (2612)
Q Consensus 2427 ~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~l~~-~p~-----------~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~ 2493 (2612)
+...+.+++.. ...++...+..+.++++.++.. +.. ......+.+.+...+.......+..-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 44433333321 1123334566778888877642 111 1122344455555555555556678888899
Q ss_pred HHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchh
Q 000051 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPV 2573 (2612)
Q Consensus 2494 ~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~v 2573 (2612)
.|+|.+-.. ...+.+.+++.+-.+.+..+|.+|+.+++.++...|+.+++ .++| +|....+ +..|
T Consensus 512 kaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~---~l~~-I~~n~~e-~~Ev 576 (618)
T PF01347_consen 512 KALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE---ILLP-IFMNTTE-DPEV 576 (618)
T ss_dssp HHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH---HHHH-HHH-TTS--HHH
T ss_pred HHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH---HHHH-HhcCCCC-ChhH
Confidence 999986221 12233333333323458999999999999999988887765 2233 3333333 3449
Q ss_pred hhhHHHHHHHHhcc
Q 000051 2574 RLAAERCAVHAFQL 2587 (2612)
Q Consensus 2574 k~aae~~~~~~~~~ 2587 (2612)
|.||. ..+++-
T Consensus 577 RiaA~---~~lm~~ 587 (618)
T PF01347_consen 577 RIAAY---LILMRC 587 (618)
T ss_dssp HHHHH---HHHHHT
T ss_pred HHHHH---HHHHhc
Confidence 97774 444444
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=94 Score=45.59 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=85.1
Q ss_pred hchhhhhHHHHhh-ccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHH
Q 000051 1770 TTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2612)
Q Consensus 1770 ~~~i~~llp~L~~-~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~ 1848 (2612)
....+.++..+.. ...+..|++|.+.++.+..+++... +. ..+.+++++...
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~-------------------------Fv--~~~~~r~dI~~l 1573 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI-------------------------FV--SQELRRDDIRKL 1573 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-------------------------hc--ccchhHHHHHHH
Confidence 3344555555553 3356789999999998888776421 00 122345566666
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhchh---hhhh
Q 000051 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGELVRKLGER---VLPS 1923 (2612)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~--~~~~~~R~~A~~aL~~lv~~~~~~---~l~~ 1923 (2612)
+...+.|....||+.|..++..+.......+ .+.-......... +.+......|...|+.++-.++-. .+|.
T Consensus 1574 ~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~---~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~ 1650 (1710)
T KOG1851|consen 1574 LESLLNDDQIEVREEAAKCLSGLLQGSKFQF---VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPK 1650 (1710)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhcccccc---chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHH
Confidence 6667889888999999999999887543222 1111111111122 334556677888888888765432 2333
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHH
Q 000051 1924 IIPILSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
.+..+....+++ ..+++.+-..+.+
T Consensus 1651 ~L~~Ls~fa~e~-~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1651 PLMNLSSFARES-AAIKQTVKKTVSE 1675 (1710)
T ss_pred HHHHHHhhcCCc-hHHHHHHHHHHHH
Confidence 333333333333 4455555555544
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=91.51 E-value=4.9 Score=51.76 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhh
Q 000051 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSR 1930 (2612)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~----------~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~ 1930 (2612)
.+++..+|..|..-.+.+|+..++|.++.|+- |.+|..|-.|+..+..++..++.. ..+.++.++.+
T Consensus 267 lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 267 LMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred HHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34555666666555567888888888887754 457889999999999999988765 46788888888
Q ss_pred hcCCC--ChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhc
Q 000051 1931 GLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2612)
Q Consensus 1931 ~L~d~--~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2612)
.+.|+ ......|++.+|.++....-...+.+.+......+...+.
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 88775 5678899998888764322222223334444444444443
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.45 E-value=5 Score=53.50 Aligned_cols=168 Identities=11% Similarity=0.129 Sum_probs=111.0
Q ss_pred hhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1575 ALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1575 ~~iip~L~~~l~d-~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
..+.|.|...++- .+.++...-.+-+..+.+.. .+++ +.+.++|.|...+++.+..+++.+...++.+++.+.-.
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt-~~e~---~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKT-PPEE---VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhC-ChHH---HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 3455666655542 22333333444444445543 2233 56779999999999999999999999999999988644
Q ss_pred C-chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1654 N-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1654 ~-~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
. -..++|.+.......+...++..+..|++.++..+..-..-+.++.+.+.....++.+.-++..++..++......-.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 3 356778776665455556688888899999987766654445555677777778888888888888777654433111
Q ss_pred hhHHhHHHHHHhhc
Q 000051 1733 NYLQQVLPAILDGL 1746 (2612)
Q Consensus 1733 p~l~~iip~ll~~L 1746 (2612)
-....++|.+....
T Consensus 504 v~~~~VlPlli~ls 517 (700)
T KOG2137|consen 504 VMAENVLPLLIPLS 517 (700)
T ss_pred eehhhhhhhhhhhh
Confidence 12345666665543
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=91.36 E-value=2.5 Score=47.63 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=97.2
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC----chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh
Q 000051 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2612)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~----~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2612)
.++.++..+..+++++++.-|-.+...++.+++..|.+. ....+..++..++..++...+..++.++..++...+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456688888899999999999999999999999876653 3566777788888877777788888888888765442
Q ss_pred h----------hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhc
Q 000051 1692 V----------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2612)
Q Consensus 1692 ~----------~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L 1746 (2612)
. .+..+++.+++..++ ....+.++.++..+....+..|.||..++-..++..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 1 223344444444443 5778889999999999999999999888776666554
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.28 E-value=9.5 Score=48.92 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH----hhChh
Q 000051 1883 MPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKS 1957 (2612)
Q Consensus 1883 l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~----~~~~~ 1957 (2612)
.+.+.+.+...+. +.++........+++..+..++...-+.++..+.+++.++.+.+|..-+..++.++. .....
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 3344444554454 678888999999999888888667778999999999999999999999999999876 22222
Q ss_pred hHHHhHhHHHHHHHHHhcCCcH
Q 000051 1958 QLLSFMDELIPTIRTALCDSIL 1979 (2612)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~D~d~ 1979 (2612)
...++++.++..+.+....+.+
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~ 121 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQ 121 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 3344455555555555555533
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=90.92 E-value=5.8 Score=46.53 Aligned_cols=149 Identities=18% Similarity=0.283 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i-~~~~~~~~R~~Al~al~~L~~~~~~~ 1413 (2612)
..-+++.....|.+..+...|.+|..+|. ..-|..++.++ ++.++.+.+ ++-+|-..-...++.+..+...-.-.
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr---~dsGlhQLvPY-Fi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLR---NDSGLHQLVPY-FIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 34456666666665555566777766643 23344444332 333443333 22223333334455555555444456
Q ss_pred chhhHHHHHHHHHHHc-----C-CCCH----HHHHHHHHHHHHHHHhhcHHh--H-HhHHHHHHhh-hc-CCChhhHHHH
Q 000051 1414 FEPYVIQMLPLLLVAF-----S-DQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKG-LE-DKAWRTKQSS 1478 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l-----~-D~~~----~VR~aa~~al~~i~~~l~~~~--v-~~ilp~Ll~~-L~-~~~w~~r~~a 1478 (2612)
.+||+.+++|.++.|+ + +++. .+|+-|+..++.+++.++... . ..+.-.+++. |+ +....+..||
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 7899999999999875 2 2222 389999999999988876542 1 3333444443 33 2345778888
Q ss_pred HHHHHHHHh
Q 000051 1479 VQLLGAMAY 1487 (2612)
Q Consensus 1479 ~~~L~~ia~ 1487 (2612)
+..+..+..
T Consensus 351 lkgls~l~k 359 (450)
T COG5095 351 LKGLSILSK 359 (450)
T ss_pred hhhhhhhch
Confidence 888876654
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.57 E-value=34 Score=49.06 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hHHHHHHHhhhcCCcchhhhhHHHHHHHHhccc
Q 000051 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2612)
Q Consensus 2515 ~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~ 2588 (2612)
..+|..+++.|.+.|..|-..++-+|..+.-++|..= .+| ...+|.+.+.+..|+--+-.-+-.|+.-++..+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 3578888888888888888888888888877777542 222 446888888888887777666667777776655
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.49 E-value=12 Score=50.11 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=113.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~ 1417 (2612)
+++.+...+...+....+.--..-+..+.+....+.+.. .+++.|....++. +...++.++..+..+++.+. .+.
T Consensus 350 ~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~-~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~ 424 (700)
T KOG2137|consen 350 MLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKE-KILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPF 424 (700)
T ss_pred hhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHH-HHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHH
Confidence 444444444433333334444444555666666666643 7899999988887 78999999999999999887 233
Q ss_pred HH-HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1418 VI-QMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1418 v~-~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
+. .++|.+.. ++...+..|+..+..|+..++..+....+-..++.+++.....+.....+.+.+....+...+.....
T Consensus 425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev 504 (700)
T KOG2137|consen 425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV 504 (700)
T ss_pred HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee
Confidence 33 56776655 45677889999999999999998888888777777888887788888888777777666654442111
Q ss_pred hhchhHHHHhhhh
Q 000051 1496 CLPKIVPKLTEVL 1508 (2612)
Q Consensus 1496 ~L~~ivp~L~~~L 1508 (2612)
....++|.+..+.
T Consensus 505 ~~~~VlPlli~ls 517 (700)
T KOG2137|consen 505 MAENVLPLLIPLS 517 (700)
T ss_pred ehhhhhhhhhhhh
Confidence 2244555555444
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.16 E-value=84 Score=42.36 Aligned_cols=292 Identities=12% Similarity=0.087 Sum_probs=167.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccc-cHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh--cccchhccH
Q 000051 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE-GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN--SKLYLVDEA 2151 (2612)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~-~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~--~~~~~~~~~ 2151 (2612)
|++.++..++++..-+|..+++.+..+-....+. -+-+..+...+.+++.+..++..|+.++..|..+ ....++.++
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahV 540 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHV 540 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence 5566666777888888888888888874333332 3566777777888888899999999999988654 446688999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhH
Q 000051 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLL 2231 (2612)
Q Consensus 2152 ~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~il 2231 (2612)
|.+++.|+.+-++-+.++.....+++-.-....-..+.+.+...+.+.+-..
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlki---------------------------- 592 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKI---------------------------- 592 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHH----------------------------
Confidence 9999999999888777776655544433222222223333444433322111
Q ss_pred HHHHHHHhcC-----CHHHHHHHHHH----HHHHHHhcCh-hhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000051 2232 PIFLQGLISG-----SAELREQAALG----LGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2232 p~l~~~L~~~-----~~~~r~~aa~~----L~~li~~~~~-~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2612)
....++++ ..+.++.++.+ +..++-.... ..+-.+..+..-|.+..+-+..-.+.-..++..+....-
T Consensus 593 --aq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf 670 (970)
T COG5656 593 --AQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF 670 (970)
T ss_pred --HHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence 11111111 11223333222 2233322210 112233444445555544332234455555555543221
Q ss_pred hcCCCccCchHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCC-------hhHHHHHHHHh-hhcCCH--HHHHHHH
Q 000051 2302 KGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTR-------VDPLVGDLLSS-LQVSDA--GIREAIL 2370 (2612)
Q Consensus 2302 ~~~~~l~p~lpqL~~~~~k~L~d~~-~~vR~~Aa~aLg~L~~~~~~-------~~~~l~~Ll~~-l~~~d~--~vr~~~l 2370 (2612)
.. ..+.|..+.+...+.+++.++. -..-..++-++.+++.++.. .-..+-++.+. +.+.+. .=+..++
T Consensus 671 ~s-keI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc 749 (970)
T COG5656 671 MS-KEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVC 749 (970)
T ss_pred HH-HHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHH
Confidence 11 1234667788888888888874 36667788889998776521 12223333332 333332 2355567
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHH
Q 000051 2371 TALKGVLKHAGKSVSSAVKIRVYSVLK 2397 (2612)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~ 2397 (2612)
+-+..++-..++.+...|++...+...
T Consensus 750 ~i~e~l~Ln~rd~Ll~qy~plfi~vag 776 (970)
T COG5656 750 RIIESLILNIRDELLSQYLPLFISVAG 776 (970)
T ss_pred HHHHHHHHHccchhHHhhhHHHHHHHh
Confidence 777777777888777778887766665
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=89.97 E-value=25 Score=48.89 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=79.5
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCc--------cCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHH
Q 000051 2285 PWQVKSAILSTLSIIIRKGGIAL--------KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLS 2356 (2612)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l--------~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~ 2356 (2612)
...++..++.+++.+..+.-..- ..+++.+...+-++.++.++..+..+.++||++.. +..-+.+...+.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~~~i~~l~~~l~ 487 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--PSSIKVLEPYLE 487 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--hhHHHHHHHhcC
Confidence 45688889999998887543221 23555566666666666788889999999998733 333333333333
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhCChhH
Q 000051 2357 SLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ 2426 (2612)
Q Consensus 2357 ~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~ 2426 (2612)
+-......+|..+++||+.+....+. .+.+.+...+.+ .+.++|.+|.-.| ....|+..
T Consensus 488 ~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l---m~t~P~~~ 548 (574)
T smart00638 488 GAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL---METKPSVA 548 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHHHHHH---HhcCCCHH
Confidence 22233478999999999977654322 233344444444 3567888776543 34446543
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.6 Score=48.54 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=86.0
Q ss_pred chhhHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhhhcCCChhh
Q 000051 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~------------------D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
+.|++..++|.++.-.. |..-++|++|-+++..+.+..... .+..++..+..+|.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45777888888887443 234579999999999998854433 567889999999988 8999
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhc----CC--------CHHHHHHHHHHHHHHHhhc
Q 000051 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT----DT--------HPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~----D~--------~~~VR~aA~~aL~~l~~~~ 1530 (2612)
|.-+...+..++..+|..+...+..+++.+-..|+ +. +.+..+++.+++..+...+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998888774 21 2344455666666664444
|
; PDB: 4A0C_A 1U6G_C. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=89.46 E-value=99 Score=42.18 Aligned_cols=190 Identities=20% Similarity=0.237 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCC
Q 000051 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2612)
...+..|+-.+.+++....-.-.+-+..-+|.++..+..... .+-+.|.+++..++. ++.|-+
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~~-------------- 134 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGAK-------------- 134 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhHH--------------
Confidence 345556777677766522112245566778888888866555 555555555555431 111111
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCCh
Q 000051 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551 (2612)
Q Consensus 1472 w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~ 1551 (2612)
.+.. .+.++.+.+.+.+ ++...+.|...|..+....+...+..
T Consensus 135 --------------------aLl~--~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~-------------- 177 (543)
T PF05536_consen 135 --------------------ALLE--SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE-------------- 177 (543)
T ss_pred --------------------HHHh--cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh--------------
Confidence 1110 2344555555555 66777888888877765443110000
Q ss_pred hHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC-C---CcchhhHhhhHHHHHHH
Q 000051 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYIGLLLPEVKKV 1627 (2612)
Q Consensus 1552 ~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~-~---~~l~~~l~~ll~~L~~~ 1627 (2612)
....+..+++.+.+.+.......+-..+..++.+....+. + ..-....+.+..++...
T Consensus 178 ------------------~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 178 ------------------DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred ------------------hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 0001112223333333333334555566666666654310 0 11234566778888888
Q ss_pred hcC-CCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1628 LVD-PIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1628 L~d-~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
+.+ ..+.-|..+....+.+.+..|.+
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 875 47888999999999999998865
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=89.44 E-value=5 Score=51.01 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=80.3
Q ss_pred cCchhhHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC---------CCCHhH
Q 000051 2225 KALQPLLPIFLQGLISG-------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------RFPWQV 2288 (2612)
Q Consensus 2225 ~~l~~ilp~l~~~L~~~-------~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~---------~~~~~v 2288 (2612)
.|+.+++|.|++-+..+ +...-...+.++..++.+-. =.+.||+-+++++++..+-. ...|.+
T Consensus 206 ~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 206 PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 34556666655544332 23334455666677776654 46889999998888865521 246899
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCC--HHHHHHHHHHHHHH
Q 000051 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST--RTVRSSAALALGKL 2340 (2612)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~--~~vR~~Aa~aLg~L 2340 (2612)
|..|...|+.++++.+.......|.+..++.+.|.|+. ....--|..+|+.+
T Consensus 285 Rd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 285 RDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999999999998877778999999999999973 34455555555544
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG1837 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.4e+02 Score=44.09 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhcccccc
Q 000051 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2514 l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~~~~ 2591 (2612)
+.++....+....+++...|..|+..+..+...-++.+.+++++++|.|-+.+.|.+..|...+-. ++..++=.=|+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~-li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK-LIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhch
Confidence 677888888888899999999999999999999999999999999999999999999999887776 44444433343
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=89.10 E-value=13 Score=47.97 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC---------CCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHH
Q 000051 2247 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317 (2612)
Q Consensus 2247 ~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~---------~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~ 2317 (2612)
...+..+..+.++-. -.+.||+-++++.++..+-. ...|.+|-.|..++..++...+......-+.+.++
T Consensus 265 ~~lm~m~rSLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~t 343 (576)
T KOG2549|consen 265 IYLMRMVRSLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRT 343 (576)
T ss_pred HHHHHHHHHHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344455555554433 45788888888776654321 13688999999999999999888777777889999
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHh------ccCChhHHHHHHHHhhhcC----------CHHHHHHHHHHHHHHH
Q 000051 2318 FIKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQVS----------DAGIREAILTALKGVL 2377 (2612)
Q Consensus 2318 ~~k~L~d~--~~~vR~~Aa~aLg~L~~------~~~~~~~~l~~Ll~~l~~~----------d~~vr~~~l~AL~~vi 2377 (2612)
+.|.+.|+ ......-|..+|..|.. +-|++..+...+-..+... ...++..++++...++
T Consensus 344 l~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ii 421 (576)
T KOG2549|consen 344 LSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPII 421 (576)
T ss_pred HHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHHH
Confidence 99999997 56777777777776622 2467776665554443221 1344555555555543
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.99 E-value=40 Score=45.91 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=69.7
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc--ccHHHH--HHHHHhhcCCCChhHHHHHHHHHHHHHHhccc---c
Q 000051 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESL--VSELLKGVGDNQASIRRSSAYLIGYFYKNSKL---Y 2146 (2612)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~l~~l--l~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~---~ 2146 (2612)
.-+|..+.+|...++.++..+...+..+...-.. ..+..+ ++.|+..+.+.+..++..||.++-++.-.... .
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3455666666677777777777666666532111 112222 66788888999999999999999998543221 1
Q ss_pred hhccHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh
Q 000051 2147 LVDEAPNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2147 ~~~~~~~il~~L~~ll~d-~d~~V~~~a~~aL~~l~~~ 2183 (2612)
+.--..+=++.++.++.. .|.+|++.....|..+...
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 221112234555666653 6788998888888887654
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.96 E-value=27 Score=47.37 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=99.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-------QMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-------~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
++..-..+++..++...-+++.-++..+.-+.+. +..|+. ..+|.++.++..+++.|-.++..+++.+....
T Consensus 519 vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 519 VVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 4443334444555788888888888888865553 445543 45799999999888888889999999987765
Q ss_pred cHHhH--HhHHHHHHhhhcCC------ChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcC-CCHHHHHHHHH
Q 000051 1452 SAQGV--KLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQT 1521 (2612)
Q Consensus 1452 ~~~~v--~~ilp~Ll~~L~~~------~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D-~~~~VR~aA~~ 1521 (2612)
....+ +..+|.|++.|-+. .|.+-..+|..|..|....+..-...+ .+-+++|..+... .++++-++|..
T Consensus 598 rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~ 677 (717)
T KOG1048|consen 598 RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASS 677 (717)
T ss_pred hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHH
Confidence 55433 78889999887542 478888888888888754433322222 1234444444433 35677778887
Q ss_pred HHHHHHh
Q 000051 1522 ALQQVGS 1528 (2612)
Q Consensus 1522 aL~~l~~ 1528 (2612)
-|..+..
T Consensus 678 vL~~lW~ 684 (717)
T KOG1048|consen 678 VLDVLWQ 684 (717)
T ss_pred HHHHHHH
Confidence 7776654
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.95 E-value=90 Score=41.06 Aligned_cols=264 Identities=15% Similarity=0.228 Sum_probs=140.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----Cch-------hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFP-------DLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~-------~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~ 1688 (2612)
++..+...++ +...-+.|..++..+......- .+. .+++.....-...++...+. +++.+...
T Consensus 200 Li~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~----a~~RIFte 273 (559)
T KOG2081|consen 200 LITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNE----AICRIFTE 273 (559)
T ss_pred HHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHH----HHHHHHHH
Confidence 5555666666 3567778888888776643211 121 22333333322223232222 23333333
Q ss_pred hChhhH----------HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhc--------cchhhhHHhHHHHHHhhcCCCC
Q 000051 1689 LGTVYF----------EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--------VQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1689 ~g~~~l----------~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g--------~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
+|.... -.++..++-...+++.++-+..+..+-.+.+.+- .-|.||..+++..+...++-+.
T Consensus 274 l~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~ 353 (559)
T KOG2081|consen 274 LGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP 353 (559)
T ss_pred HHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC
Confidence 333221 2233344445566677777777777766654332 2356666666665555444322
Q ss_pred hhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHH
Q 000051 1751 ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~ 1830 (2612)
+ ...+.++ .++....|....+++.+..+-+
T Consensus 354 -~--------------------~~~l~Ee-----~~~f~~fR~~v~dvl~Dv~~ii------------------------ 383 (559)
T KOG2081|consen 354 -D--------------------QFDLPEE-----ESEFFEFRLKVGDVLKDVAFII------------------------ 383 (559)
T ss_pred -c--------------------cccCccc-----hhHHHHHHHHHHHHHHHHHHHh------------------------
Confidence 0 0000000 1222335666666666654432
Q ss_pred HHHHHHhChhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000051 1831 RAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908 (2612)
Q Consensus 1831 ~~l~~~Lg~~~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~a 1908 (2612)
|. ++.++.+|..+ ...+|+.-++++-.+..++.+.+..=.+++|.+++.+.+.=. ....|..+...
T Consensus 384 -------gs---~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q~~~~~ts~ll 451 (559)
T KOG2081|consen 384 -------GS---DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--QAPLRYTSILL 451 (559)
T ss_pred -------Cc---HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--chhHHHHHHHH
Confidence 21 12344444433 356899999999999999998876656778888777654322 22388888888
Q ss_pred HHHHHHHhch--hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000051 1909 LGELVRKLGE--RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2612)
Q Consensus 1909 L~~lv~~~~~--~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2612)
+|++.+.+.. ..+..++..+..++.... .-..+..++..++..
T Consensus 452 ~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~ 496 (559)
T KOG2081|consen 452 LGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSA 496 (559)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHH
Confidence 8888776543 245555566666655443 334444555555443
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.83 E-value=1e+02 Score=41.44 Aligned_cols=264 Identities=15% Similarity=0.097 Sum_probs=130.7
Q ss_pred HhhHHHHHHHhc-CCCCHHHHHHHHHHHHHhhhh--cccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh
Q 000051 2072 LGTILPALLSAM-GDDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2612)
Q Consensus 2072 l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~--~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~ 2148 (2612)
+..++..++... ...++..-+..+..++.++.. ++.+.+.+++..|....... .....+-.++.++++.
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S------ 245 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS------ 245 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC------
Confidence 334444444443 333344446677788888773 34577888988888876543 5555677777777752
Q ss_pred ccHHHHHHHHHHHhcCC------ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCC
Q 000051 2149 DEAPNMISTLIVLLSDS------DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222 (2612)
Q Consensus 2149 ~~~~~il~~L~~ll~d~------d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~ 2222 (2612)
......+..|+..+.++ +..+...|...++.++-..+++.+ +.
T Consensus 246 ~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~-----------------------------~~-- 294 (464)
T PF11864_consen 246 HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGY-----------------------------PS-- 294 (464)
T ss_pred ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCc-----------------------------ce--
Confidence 23456777777777322 223334444444443332221111 11
Q ss_pred CCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcChhhhhhchhhhhHHHHHHhcC---CCC--------HhHHH
Q 000051 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELI-EVTSEQSLKEFVIPITGPLIRIIGD---RFP--------WQVKS 2290 (2612)
Q Consensus 2223 ~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li-~~~~~~~l~p~v~~i~~pLi~~l~~---~~~--------~~vk~ 2290 (2612)
++-....++|.|...+..+++-+-......+..++ ...+.....+....+...+.++... ... ..++.
T Consensus 295 l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (464)
T PF11864_consen 295 LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSS 374 (464)
T ss_pred ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHH
Confidence 11122237788888777665555445555566666 4443222333333333333322221 101 12332
Q ss_pred HHHH---HHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCChhHHHHHHHHhhh--cCCHH
Q 000051 2291 AILS---TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQ--VSDAG 2364 (2612)
Q Consensus 2291 ~al~---~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~Ll~~l~--~~d~~ 2364 (2612)
..-. .+..+... ..+..-.+.+...|.++...-+++........-.... -.++.+-.-+..|++... +.+..
T Consensus 375 ~~~~l~~~ie~L~~~--~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~ 452 (464)
T PF11864_consen 375 NLHSLLSSIESLYEQ--HDFNGPKDKLFNFFERVHSYLPDSSALLVLFYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSE 452 (464)
T ss_pred HHHHHHHHHHHHHhC--CCcCccHHHHHHHHHHHhccCCHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCCCCch
Confidence 2222 22333332 1222223566777777655543333322221111111 123445556667777664 23478
Q ss_pred HHHHHHHHHHHH
Q 000051 2365 IREAILTALKGV 2376 (2612)
Q Consensus 2365 vr~~~l~AL~~v 2376 (2612)
+|-.+++.+.++
T Consensus 453 vRi~aL~~l~e~ 464 (464)
T PF11864_consen 453 VRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHHHhhC
Confidence 888888887653
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=88.61 E-value=2.2 Score=42.68 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccH
Q 000051 2113 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192 (2612)
Q Consensus 2113 ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l 2192 (2612)
.+...+..+.|+.+.+|..++..|..+++... ......+.++..++..+.|+|+-|--+|..+|..++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 45566677789999999999999999987654 23345688899999999999999999999999999998887666555
Q ss_pred HH
Q 000051 2193 IK 2194 (2612)
Q Consensus 2193 v~ 2194 (2612)
+.
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 54
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.55 E-value=6.3 Score=48.59 Aligned_cols=112 Identities=23% Similarity=0.253 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCc
Q 000051 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310 (2612)
Q Consensus 2231 lp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~ 2310 (2612)
++.++..+.+++.++|+.|+..||.++..-+...-.-.=......|+.++....+..+|..||.+++.+++.-+.....|
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f 205 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF 205 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence 33444488899999999999999999987753221111122456788888865677899999999999998765444444
Q ss_pred hHH-HHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000051 2311 LPQ-LQTTFIKCLQDS--TRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2311 lpq-L~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~ 2342 (2612)
++- =...+..+++++ +...+..|+.-++.+..
T Consensus 206 l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 431 144566788884 66777788888888754
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.44 E-value=14 Score=53.95 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh
Q 000051 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2612)
Q Consensus 1883 l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2612)
+..=+..+++.+..+++..|.-|...+++++.....+ ++|....+..+...|.+..||..+-..+..++..+. ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 3444666777788899999999999999999776544 345555556677789999999999999998887765 56
Q ss_pred HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000051 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2612)
Q Consensus 1959 l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~ 1991 (2612)
+.+|++.++|...-...|.+..|-.+|...|..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999999999998888877666543
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=87.87 E-value=4.5 Score=41.90 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.2
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000051 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2612)
Q Consensus 1378 ~i~~~L~~~i~~---~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2612)
.++..+.+.+.+ +++...|..++.+++.+.+..+..+.++.+++.-.+...+..+ .+|+.|..+...+...+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 456666666666 5578888999999999999666555555556655555555555 89999999999999999988
Q ss_pred hHHhHHHHHHh
Q 000051 1455 GVKLVLPSLLK 1465 (2612)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2612)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=87.84 E-value=83 Score=39.29 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=135.9
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHh----HhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH----ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~----llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
.+...|.++|...-+.++-..+......+....|.+.+.. ..|.+...+....-.||...+..+...-..+|..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 3455677778776677888889999999999999986633 345666666677788999999999988888899999
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000051 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~ 1812 (2612)
|.+..++..++.++.|+..++-+.+...+..+...++.+. +...+...+- .+-..|..++..+..-+.. ...
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~---F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~---~~~- 205 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY---FWQCLWLCII-TSPSRRLGALNYLLRRLPK---FQN- 205 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH---HHHHHHHHHh-cCcchhHHHHHHHHHhCCc---ccc-
Confidence 9999999999999999998888888888888877776652 3333332222 2345788777766543321 100
Q ss_pred ccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1813 ~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
++.....+ .....++. ...-++.+++.++.|.+.-|++.+++.+-....
T Consensus 206 -------~~~~~~~~----~~~~~~~~-~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 206 -------DELSLSSE----EQEYCLGP-DPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred -------cccccchH----HHHHhcCC-CccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 00000000 11222332 123467788888999999999999998765444
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=87.67 E-value=4.4 Score=40.56 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=65.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHH
Q 000051 2350 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 2429 (2612)
Q Consensus 2350 ~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2612)
.+.+.+..+.++...+|...+.-|+.++.... ......+.++.++...+.|+|.-+--+|.++++.|+...|+..+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 34566666777777788888888888887654 3345678999999999999999999999999999999999765555
Q ss_pred HHHHHH
Q 000051 2430 LLQELL 2435 (2612)
Q Consensus 2430 ~l~~ll 2435 (2612)
+++.+.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 555443
|
|
| >KOG1837 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.9e+02 Score=42.79 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHH
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~ 2175 (2612)
+.+++..++...+++++..|..|+..+..+....+..+...+++.+|.|-++++|.+.+|-..+..
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888665554
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=87.04 E-value=10 Score=47.11 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=108.2
Q ss_pred HHHHHHHH-hcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc----c--CchHHHHHHHHHHhc
Q 000051 2251 LGLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL----K--PFLPQLQTTFIKCLQ 2323 (2612)
Q Consensus 2251 ~~L~~li~-~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l----~--p~lpqL~~~~~k~L~ 2323 (2612)
.++.-++. ..+...+..+..-+++|++.++.|. +..+|...+.+|..++.+++... + ...+.+.+.+..++.
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhh
Confidence 34444444 6665678888899999999999886 88999999999999999876543 1 234556777777877
Q ss_pred --------CCCHHHHHHHHHHHHHHHhc------cC---ChhHHHHH-HHHhhh-cC---CHHHHHHHHHHHHHHHHhcC
Q 000051 2324 --------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAG 2381 (2612)
Q Consensus 2324 --------d~~~~vR~~Aa~aLg~L~~~------~~---~~~~~l~~-Ll~~l~-~~---d~~vr~~~l~AL~~vi~~~g 2381 (2612)
+++..+=..|..||-.|... .+ ..+.++.+ +++.+. .. ...++...++.+..++...|
T Consensus 177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 45666767778888887442 12 24445554 555543 22 37888999999999999988
Q ss_pred CCcChHHHHHHHHHHHHhhcCC
Q 000051 2382 KSVSSAVKIRVYSVLKDLVYHD 2403 (2612)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~ 2403 (2612)
... ..+.+.++..+.+.+.++
T Consensus 257 i~~-~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 257 ISS-VKHLQRIIPVLSQILENP 277 (282)
T ss_pred cHH-HHHHHHHHHHHHHHhcCC
Confidence 755 678888888888777664
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.56 E-value=1e+02 Score=39.09 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhHHhHHHHHHhhhcCCChhh
Q 000051 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1398 ~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
.|+..+-.+++...-...-.-.+++..+.+++.-.+...--....-++.+.-.... ..-..++..|+..+.......
T Consensus 282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 56666666776554322223346778888887655544444333333332111111 122456666777777777788
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCC
Q 000051 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~ 1511 (2612)
+...+.++..+.+...-.-...-..++|.+..++++.
T Consensus 362 ~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 362 RKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 8889999988887543332222356788888888654
|
|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.6e+02 Score=41.04 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=67.3
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhhee-ecC-CchHHHHHH--------HHHHHh-cCCCCCC
Q 000051 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA-VHD-PEKSVAEAA--------EDIWDR-YGYDFGT 1130 (2612)
Q Consensus 1062 ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~la--------~~~w~~-~~~~~~~ 1130 (2612)
.++..+|+|+..++.||++|.+... .-.|...+.-. ... .+-..|-.| .++|++ ++....+
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~--------q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEK--------QHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhc--------cccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 5688899999999999999987531 12233333221 111 222233332 368986 4433333
Q ss_pred C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHH
Q 000051 1131 D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLY 1176 (2612)
Q Consensus 1131 ~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~ 1176 (2612)
+ + ..++..+-+.+....-..|+|++.++. .+|+.||+++..|.+.-
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~L 132 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLL 132 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhh
Confidence 2 3 567776666666666688888888876 57888888877776643
|
|
| >PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.9e+02 Score=41.37 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=74.0
Q ss_pred chhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000051 2468 PLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547 (2612)
Q Consensus 2468 ~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~ 2547 (2612)
.....+.+.+......+++......+.++..+.....-. +. + ..+-+.+-....|+.-..++.....++..++...
T Consensus 437 ~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~-~~--~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~ 512 (727)
T PF12726_consen 437 RISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFP-PK--K-EKDELDPAKTQFNKSLGQITDLISQILERLSDFD 512 (727)
T ss_pred hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccC-Cc--c-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777888888888888888765543211 10 0 1112222223333333456677778888999888
Q ss_pred chhhhhhHh--HHHHHHHhhhcCCcchhhhhHHHHHHHHhc
Q 000051 2548 PSAIMVHVA--LFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2612)
Q Consensus 2548 ~~~v~~~l~--~l~p~l~~~~~~~~~~vk~aae~~~~~~~~ 2586 (2612)
|+.+...+. ...-++..++=.++..+.+||..-+-.++.
T Consensus 513 ~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 513 PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 888777775 567777888878888888888755555554
|
The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=85.70 E-value=43 Score=43.99 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=137.2
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCC----hh-HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcch---hhhhHHHH
Q 000051 1188 DAGWLGRQGIALALHSAADVLRTKD----LP-VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN---VSLLFPIF 1259 (2612)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~----~~-~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~---~~~Llp~~ 1259 (2612)
+..|++-..+...|..+....+.+. +. .++.-|+ ..+.++++.-|......+..+.+.+...+ .+.+-..|
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll-~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~ 179 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLL-ELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIF 179 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHH-HTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4578887777777776665443322 22 3444453 56778899999999888888877664432 34455556
Q ss_pred HHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccC--CcchHhHHHHHHHhcCCCCH-HHHHHHHhhhHHhHhhhcchhH
Q 000051 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSE-AVQRAVSSCLSPLMQSMQDEAP 1336 (2612)
Q Consensus 1260 ~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~--~~~~~~i~~~L~~~L~~~~~-~Vq~~~~~~L~~lv~~~~~~~~ 1336 (2612)
.++........ .+ .-...++|.+...+... +.+..-+...++...+.+.- ........|+..++.....-..
T Consensus 180 ~~fi~e~~~~~----gI-~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~ 254 (409)
T PF01603_consen 180 YRFIYETERHN----GI-AELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAE 254 (409)
T ss_dssp HHHHHTTS--S----TH-HHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHH
T ss_pred HHHhcCccccc----CH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH
Confidence 55555321110 01 11223444443322211 11122233445555555542 3345566677666655444444
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000051 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2612)
Q Consensus 1337 ~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~ 1414 (2612)
..+..++..-...+ ......-...+..++..+++..+.. ..++..+..++.+. +..+-+.|+..+..= .+-..+
T Consensus 255 ~~i~~llk~WP~t~-s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~--~~~~li 330 (409)
T PF01603_consen 255 PVIKGLLKHWPKTN-SQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE--YFLSLI 330 (409)
T ss_dssp HHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH--HHHHHH
T ss_pred HHHHHHHHhCCCCC-chhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH--HHHHHH
Confidence 45555554433332 3444556666777777776555431 25777788888887 788888777654321 111223
Q ss_pred hhhHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Q 000051 1415 EPYVIQMLPLLLVAFSDQ-----VVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~-----~~~VR~aa~~al~~i~~ 1449 (2612)
..+...++|.++..+... +..||..+..+++.+++
T Consensus 331 ~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 331 SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445556777777765431 56789888888888765
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=85.65 E-value=19 Score=47.13 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccC
Q 000051 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKP 2309 (2612)
Q Consensus 2232 p~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p 2309 (2612)
..++.-+-.++......-..-+..++...++..+.+....+..-+.+.+... +..|-..|+..+. .+..-+ ..
T Consensus 258 ~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li----~~ 332 (409)
T PF01603_consen 258 KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLI----SQ 332 (409)
T ss_dssp HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHH----HC
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHH----Hh
Confidence 3333333334444444556778888888887888877777777777777654 6777777777764 233322 23
Q ss_pred chHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhccC
Q 000051 2310 FLPQLQTTFIKCLQD-----STRTVRSSAALALGKLSALST 2345 (2612)
Q Consensus 2310 ~lpqL~~~~~k~L~d-----~~~~vR~~Aa~aLg~L~~~~~ 2345 (2612)
+...+.+.+...+.. -+..||..|..++..+..+.+
T Consensus 333 ~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 333 NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 334455555554433 289999999999999977653
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.8e+02 Score=40.80 Aligned_cols=276 Identities=18% Similarity=0.213 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc--------HHHHHHHHHhhcCCC
Q 000051 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG--------VESLVSELLKGVGDN 2124 (2612)
Q Consensus 2053 ~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~--------l~~ll~~Ll~~l~~~ 2124 (2612)
...+++.+++..|..|.+.+-..+=.++..+.++++.++..+..|+..++..++-.. .+-++..+-..++..
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 346788888889999999887777777778888999999999999988887664322 233344444444422
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccc-HHHHHHHHHHhh
Q 000051 2125 QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAISTS 2203 (2612)
Q Consensus 2125 ~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~-lv~~l~~~l~~~ 2203 (2612)
...- .+-..+..++++++....+++.++++.++..++.....-...-..-+-.+++...+.+... ++....+.....
T Consensus 648 ~~s~--~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~ 725 (1014)
T KOG4524|consen 648 GMSP--RVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQ 725 (1014)
T ss_pred CCCc--hhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 2111 2334455667777777788888888888888864432211222223333333332222111 111111111110
Q ss_pred hhhhhhhhcCCcccccCCCCCcCc-----------hhhHHHHHH-----HHhcC----CHHHHHHHHHHHHHHHHhc-Ch
Q 000051 2204 RDKERRKKKGGPILIPGFCLPKAL-----------QPLLPIFLQ-----GLISG----SAELREQAALGLGELIEVT-SE 2262 (2612)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~~p~~l-----------~~ilp~l~~-----~L~~~----~~~~r~~aa~~L~~li~~~-~~ 2262 (2612)
... ... . +|..+ ..+.|.+.+ ++..+ .++.+.. .--++=-..+ ++
T Consensus 726 ~~k-----~l~--e-----~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~--e~edens~~~d~e 791 (1014)
T KOG4524|consen 726 STK-----VLN--E-----LPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREE--EVEDENSEYTDTE 791 (1014)
T ss_pred HHH-----Hhh--c-----chhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCC--CccccccCCCCCC
Confidence 000 000 0 11111 112222211 11111 0110000 0000000000 00
Q ss_pred hhhhh---chhhhhHHHHHHhcCCCCHhHHHHHHHHHH---HHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000051 2263 QSLKE---FVIPITGPLIRIIGDRFPWQVKSAILSTLS---IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA 2336 (2612)
Q Consensus 2263 ~~l~p---~v~~i~~pLi~~l~~~~~~~vk~~al~~L~---~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~a 2336 (2612)
..+.+ .+..|++--++.+.+. +-.+|..+|.+|. .++...+..+-|.+.+.++.++.++.+.++-+-..|..|
T Consensus 792 p~~~~qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~ 870 (1014)
T KOG4524|consen 792 PILPDQVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSC 870 (1014)
T ss_pred CCCChHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHH
Confidence 01111 2345566667777764 6678889998886 455667778888889999999999999999999999999
Q ss_pred HHHHHhccC
Q 000051 2337 LGKLSALST 2345 (2612)
Q Consensus 2337 Lg~L~~~~~ 2345 (2612)
+-.+....+
T Consensus 871 i~~m~~~sg 879 (1014)
T KOG4524|consen 871 IEQMGKYSG 879 (1014)
T ss_pred HHHHHHHhh
Confidence 999866543
|
|
| >KOG3961 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.8 Score=48.42 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh---c
Q 000051 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK---G 2303 (2612)
Q Consensus 2227 l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~---~ 2303 (2612)
....+|.|.+||...+-.-|-.|-.++.+++...| +.+-|.+++++.||-+.+..+ +.++....|.+|..|... +
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34689999999988777778888999999998888 788899999999999988876 788999999999887654 5
Q ss_pred CCCccCchHHHHHHH
Q 000051 2304 GIALKPFLPQLQTTF 2318 (2612)
Q Consensus 2304 ~~~l~p~lpqL~~~~ 2318 (2612)
|..+.||..||.+.+
T Consensus 190 G~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVL 204 (262)
T ss_pred chhhhhHHHHhhhhh
Confidence 688889999998865
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=84.45 E-value=18 Score=44.99 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=97.9
Q ss_pred CCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---------chhhHHHHHHHhc---c----CCCH
Q 000051 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK---S----DNSN 1672 (2612)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~---------~~~ll~~L~~~L~---~----~~~~ 1672 (2612)
+...+..+.+-++|.+..+++|..+.+|..+..++..+...++... .+-+-+.+...+. + +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3456788899999999999999999999999999999999776543 2223333444443 1 2222
Q ss_pred HHHHHHHHHHHHHHHHhC---h----hhHHhHhHH-HHHhccC----CChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1673 VERSGAAQGLSEVLAALG---T----VYFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g---~----~~l~~llp~-l~~~~~~----~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
..-..+..++-.++.... . ..+.+++-. ++..... +.+.++...+..+..+...+|-....|+..++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 233344455555544321 1 123334433 5555433 248899999999999999999999999999999
Q ss_pred HHHhhcCCCC
Q 000051 1741 AILDGLADEN 1750 (2612)
Q Consensus 1741 ~ll~~L~d~~ 1750 (2612)
.+.+.+.+++
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888764
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.1e+02 Score=37.41 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=88.7
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2394 SVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2394 ~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
+.|.++++| .+.++|..+-+|+..|-...+.+.... .+...+..+.
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs---------------------------------~IV~~gg~~~ 332 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS---------------------------------TIVEKGGLDK 332 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH---------------------------------HHHHhcChHH
Confidence 456667777 456788777777766655544432211 1112233444
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhh------HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV------VDILASVVSALHDDSSEVRRRALSALKSVAKA 2546 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l------~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~ 2546 (2612)
++.....+. ++|.+...+..++..+.... |++.... .-.++.+-..+. ...|.|.|+++++.++-+
T Consensus 333 ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~----pdhsa~~ie~G~a~~avqAmkahP~--~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 333 IITLALRHS--DDPLVIQEVMAIISILCLRS----PDHSAKAIEAGAADLAVQAMKAHPV--AAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHcC--CChHHHHHHHHHHHHHHhcC----cchHHHHHhcchHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHh
Confidence 555444433 45666666666666655442 2222111 112333333322 346899999999999998
Q ss_pred CchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHH
Q 000051 2547 NPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582 (2612)
Q Consensus 2547 ~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~ 2582 (2612)
..+.-.++++.=+..|...-+..+..++.+|-.|+-
T Consensus 405 s~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALR 440 (461)
T KOG4199|consen 405 SAENRTILLANGIEKLIRTAKANHETCEAAAKAALR 440 (461)
T ss_pred hhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHH
Confidence 877667777777888888888888888877766653
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.47 E-value=11 Score=47.18 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=93.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh---hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHh
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2612)
..++..+++.+..+|..|...+.++........ +..+++.+.....|.+..+|.+....+-.++-...++.+.++..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 345566789999999999999999988744333 34555566667789999999999988888777777777889999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1965 ~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
-+++.+..++....+++|+-+...+..+...+++...
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 9999999999999999999999999988887765433
|
|
| >KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.35 E-value=1.3e+02 Score=37.63 Aligned_cols=272 Identities=14% Similarity=0.096 Sum_probs=129.3
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHH
Q 000051 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2612)
Q Consensus 2115 ~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~ 2194 (2612)
..+++..+. ....++.|...++.+++..+ ......+.+=+.+++|.|-.||..|..-|-.+++. +.++.+.+
T Consensus 28 ~~il~~~k~-~~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d 99 (460)
T KOG2213|consen 28 EGILKAVKG-TSKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVND 99 (460)
T ss_pred HHHHHHhhc-chHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHH
Confidence 344555544 34556778888999988654 33445566667788899999999888877777665 55666666
Q ss_pred HHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhh-hh
Q 000051 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-IT 2273 (2612)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~-i~ 2273 (2612)
.+.|.++...-. -|......++..+|+-+..-|..=+-..+++.+..-+.. |+
T Consensus 100 ~l~qLLnk~sl~--------------------------~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv 153 (460)
T KOG2213|consen 100 VLVQLLNKASLT--------------------------GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIV 153 (460)
T ss_pred HHHHHHHHHHHH--------------------------HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHH
Confidence 666666532111 011111113444444444333322222222222211111 11
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHH---HH--HhcCCCHHHHHHHHHHHHHHHhc---cC
Q 000051 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTF---IK--CLQDSTRTVRSSAALALGKLSAL---ST 2345 (2612)
Q Consensus 2274 ~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~---~k--~L~d~~~~vR~~Aa~aLg~L~~~---~~ 2345 (2612)
.-.-..+.|- ..+--..-+..|+.+-.-.+..-..-+..|...+ .. .+.-++.+.-.+-..|+..-+-+ +.
T Consensus 154 ~eikkal~dV-tgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFarga 232 (460)
T KOG2213|consen 154 DEIKKALEDV-TGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGA 232 (460)
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCC
Confidence 1111122221 1111112222222211100000000011111111 11 12222444444445554443211 11
Q ss_pred ChhHHHHHHHHhhh--cCC---HHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 000051 2346 RVDPLVGDLLSSLQ--VSD---AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIM 2418 (2612)
Q Consensus 2346 ~~~~~l~~Ll~~l~--~~d---~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L 2418 (2612)
.-..++..+...+- ..| .+.+-..+++|+++.............++|+++|...|--+ .+.......+|+-.+
T Consensus 233 pSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~ 312 (460)
T KOG2213|consen 233 PSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYA 312 (460)
T ss_pred chhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHH
Confidence 22345555444431 122 56677799999999876533223467788888888877543 456666677887665
Q ss_pred Hhh
Q 000051 2419 SQC 2421 (2612)
Q Consensus 2419 ~~~ 2421 (2612)
...
T Consensus 313 ~h~ 315 (460)
T KOG2213|consen 313 LHH 315 (460)
T ss_pred HHH
Confidence 443
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=83.32 E-value=11 Score=38.98 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000051 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~---~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2612)
.++..+.+.+.|.+ +...|..++.+++.+.+..|.....+.+++.-.+...+. .++.|..|..+...+...+++.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 45566666665543 667888999999999998776566666666666666665 4479999999999999999887
Q ss_pred hHHhHHHHHH
Q 000051 1455 GVKLVLPSLL 1464 (2612)
Q Consensus 1455 ~v~~ilp~Ll 1464 (2612)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7665555443
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=82.97 E-value=18 Score=37.60 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHH
Q 000051 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2612)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2612)
..+...|..+.++++++++..|+. +.|++.-.|...++.+ +.|..++.+-..++...+.+.+.+++++++-.+.+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 367788999999999999944433 3566666666665544 88999999989999999998888888888777765
Q ss_pred Hh
Q 000051 1973 AL 1974 (2612)
Q Consensus 1973 ~L 1974 (2612)
..
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 43
|
; GO: 0004674 protein serine/threonine kinase activity |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=82.90 E-value=5.6 Score=40.98 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=64.7
Q ss_pred ccCchHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhc-cCChhHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHh
Q 000051 2307 LKPFLPQLQTTFIKCLQDST----RTVRSSAALALGKLSAL-STRVDPLVGDLLSSLQVS--DAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2307 l~p~lpqL~~~~~k~L~d~~----~~vR~~Aa~aLg~L~~~-~~~~~~~l~~Ll~~l~~~--d~~vr~~~l~AL~~vi~~ 2379 (2612)
+++++=.++..|-..+.|.+ -.-|.++..++|.++.. ++.+....|+++..++++ .++.|..+++++...+..
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 34444456666777777753 35699999999999774 567888889988888763 578999999999999988
Q ss_pred cCCCcChHHHHHHHHHHH
Q 000051 2380 AGKSVSSAVKIRVYSVLK 2397 (2612)
Q Consensus 2380 ~g~~~~~~~~~~i~~~L~ 2397 (2612)
....-..+..+.++..+.
T Consensus 85 L~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 85 LKEEELGPLLDQIFAAIL 102 (107)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 654322344444444443
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.65 E-value=1.4e+02 Score=37.45 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=99.3
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCC------------CchHHHHHHHHHHHHHH
Q 000051 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN------------DNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1736 ~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d------------~~w~vR~~a~~ll~~ll 1803 (2612)
...+..-+..+.|++-.||..|.+.+..+++. +.+..+.|.+.+.+.. .+..+|..++..+..=+
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl 136 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKL 136 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh
Confidence 34677778888899999999999888777653 3333344444333321 01122222222211111
Q ss_pred HHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH
Q 000051 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883 (2612)
Q Consensus 1804 ~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2612)
..+ ..+.+..+.-..++..+.+.+.|...+--...+..|+.+-.....+-..-+
T Consensus 137 ~~l--------------------------~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~l 190 (460)
T KOG2213|consen 137 ITL--------------------------KGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARL 190 (460)
T ss_pred hcc--------------------------cHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHH
Confidence 100 012222333345666777777888777777777777776543322212223
Q ss_pred HHHHHHHHHH-----hc--CCCHHHHHHHHH--HHHHHHHHhch-hhhhhHHHHHhhhcCCCC-hhHHHHHHHHHHHHHH
Q 000051 1884 PVLMNTLISS-----LA--SSSSERRQVAGR--ALGELVRKLGE-RVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1884 ~~ll~~L~~~-----L~--~~~~~~R~~A~~--aL~~lv~~~~~-~~l~~llp~L~~~L~d~~-~~vR~~a~~aL~~li~ 1952 (2612)
..+....-.. +. |.+...|...+. ++.-+.+..+. .++.++-..+...-.+.. .+.+...+.+|+++..
T Consensus 191 qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss 270 (460)
T KOG2213|consen 191 QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSS 270 (460)
T ss_pred HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCc
Confidence 3333222211 11 233334433221 11222222221 122222221111111222 3455677888888766
Q ss_pred hhChhhHHHhHhHHHHHHHHHh
Q 000051 1953 SAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1953 ~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
....+...+.++.++..+...+
T Consensus 271 ~ttaq~a~q~Lpsi~elLk~yM 292 (460)
T KOG2213|consen 271 YTTAQAARQMLPSIVELLKEYM 292 (460)
T ss_pred cchHHHHHHHHHHHHHHHHHhc
Confidence 5544444555666666666544
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.21 E-value=1.5e+02 Score=37.48 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=84.1
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCcc--ccCCchhHHHHHHHHh-hhccCChhHHHhHHHHHHHHHhhhhcc
Q 000051 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSA--ISMSPLFLSILDRLKS-SLKDEKFPLREASTKALGRLLLHQIQS 2506 (2612)
Q Consensus 2430 ~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~--~~~~~~~~~i~~~l~~-~~~~~~~~ir~~a~~alg~ll~~~~~~ 2506 (2612)
+++.+..|+.+++.......+++++.+.+....- +.+.++...+++++.+ .-.+++....-++..|+..+..-...+
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 6666778888887776666778888887654433 2356677777877765 556677888888888888876533222
Q ss_pred CCCCchh-hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hHHHHHHHhhhcCCcch-hhhhHHHHHH
Q 000051 2507 GPANTTV-VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTP-VRLAAERCAV 2582 (2612)
Q Consensus 2507 ~~~~~~~-l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~-vk~aae~~~~ 2582 (2612)
. .. .......++..+...++-|-.--+-+++-+....+.+..+.. +.++..+..=.+.++.. |--.+-|-+.
T Consensus 396 a----~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~ 471 (604)
T KOG4500|consen 396 A----HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLL 471 (604)
T ss_pred h----hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHH
Confidence 1 11 122444455555555666655544444443333322222222 22333333333444444 4444444444
Q ss_pred HHhc
Q 000051 2583 HAFQ 2586 (2612)
Q Consensus 2583 ~~~~ 2586 (2612)
.+.+
T Consensus 472 ~lIk 475 (604)
T KOG4500|consen 472 GLIK 475 (604)
T ss_pred HHHH
Confidence 4443
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=82.21 E-value=1.2e+02 Score=36.43 Aligned_cols=137 Identities=17% Similarity=0.092 Sum_probs=81.4
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhcc-CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHH
Q 000051 2318 FIKCLQD-STRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSV 2395 (2612)
Q Consensus 2318 ~~k~L~d-~~~~vR~~Aa~aLg~L~~~~-~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~ 2395 (2612)
++..+.. .++.+.....++|+.++... ....+++..|.....++....+.-.+.-+..+........ ++...++..
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--~~L~~~L~~ 82 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--PFLQPLLLL 82 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--HHHHHHHHH
Confidence 3333444 58999999999999998766 6666667777666666666666666777776665533222 222222222
Q ss_pred -HHH---hhcC--CCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHH
Q 000051 2396 -LKD---LVYH--DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA-SSPSWAARHGSVLVFATFL 2457 (2612)
Q Consensus 2396 -L~~---~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~l 2457 (2612)
..+ ...+ .........+.++-.++...|+ ...++++.+-..+ ...+...+..++.++..++
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 111 1111 2344556667888999999887 6556665543333 4445444555555666665
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=82.02 E-value=1.3e+02 Score=36.67 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=94.9
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC-----C-CcchhhHhhhHHHHHHHhcCCC-----HHHHHHHHH
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-----P-KDMIPYIGLLLPEVKKVLVDPI-----PEVRSVAAR 1641 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~-----~-~~l~~~l~~ll~~L~~~L~d~~-----~~VR~~A~~ 1641 (2612)
....+.+.+.+|+..++ .-..+.+.+..+.....+ . ..+.-.+-..+|.+...+.++. +.++ .++.
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAE 137 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHH
Confidence 34457788888887653 334456666666654222 1 1122223356777777777766 3444 5557
Q ss_pred HHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHH-HHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1642 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA-AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1642 aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~a-a~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
.|+.+++..|...+..++..+... .- ..+..- .+.+..+...+.++..-+++..++..+.++.+.+|...+.++
T Consensus 138 ~La~~a~~~~~~~La~il~~ya~~---~f--r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARILSSYAKG---RF--RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHHHhCCCccHHHHHHHHHhc---CC--CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 788888765555555554433221 11 011111 122333344444444445555666677777777888888887
Q ss_pred HHhhhhhccchhhhHHhHHHHHHhhcCCCC
Q 000051 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
..+.....-. .|+..+++.++++.+..+.
T Consensus 213 ~~ll~~~d~~-~~~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 213 KVLLPHVDMR-SPHGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHhccccCC-CCcchHHHHHHHHHhCCcc
Confidence 7776655433 3466667777777776543
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=81.91 E-value=94 Score=40.12 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHHHhhC--ChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhh
Q 000051 2404 DDHVRVSAASILGIMSQCM--EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481 (2612)
Q Consensus 2404 ~~~vr~~aa~~Lg~L~~~~--~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~ 2481 (2612)
++.-|..|-+++-++.... +.+-=..+++.+..-.+.++...|..+..+++.+...+|+-+...+....+...+.+
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d-- 158 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID-- 158 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh--
Confidence 4566777777776666552 111011233334333334444567778889999999999888776665555555544
Q ss_pred ccCChhHHHhHHHHHHHHHhhhhccC-CCCchhhHHHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCchhh---h
Q 000051 2482 KDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAI---M 2552 (2612)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~-~~~~~~l~~~l~~~~~~----l~~~~~-~vr~~a~~~l~~~a~~~~~~v---~ 2552 (2612)
....+.+..+.++=+++.+..... .-..-++..++.+|... ..+++. +--+.+..++.++-+.-|..+ .
T Consensus 159 --~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 159 --GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred --ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 333466667777777776643211 00112455666666654 233332 455667777888888766653 1
Q ss_pred hhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccc
Q 000051 2553 VHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590 (2612)
Q Consensus 2553 ~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~~~ 2590 (2612)
+-. .-+..+...++-++..+|.+....+..+|++..-
T Consensus 237 ~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 237 NDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred CCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 111 4567788888889999999999999999999764
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.54 E-value=23 Score=44.52 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=95.8
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhh
Q 000051 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPS 1923 (2612)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~ 1923 (2612)
.++..+...+..||+.|+.-++.+..+.|..+..++-.+++.+.....|.+..+|....+.+..++...... ..+.
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 334446788999999999999999998888888788888899999999999999999999999877665543 3456
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHH
Q 000051 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2612)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2612)
+.+.+..++..-.+.+|..+...+.-++..+++........ +++.+..
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~-il~n~~d 189 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK-ILENFKD 189 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH-HHHHHHH
Confidence 66667777888889999999999998888776644333222 4444433
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.74 E-value=85 Score=38.14 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHhhcCC----hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000051 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
.+++++.+.+|.||.+|+.-+-.+... +- .+-...++.+.+.+.++.. .+.|..++.+..--..+...-++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999877666543 21 1224567777787776655 33333333321000001111222233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~ 1605 (2612)
..+...+.++.+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 344444555555566666777777765
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.72 E-value=1.3e+02 Score=38.36 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=49.6
Q ss_pred HHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhccCCCCchhhHH---HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000051 2472 SILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVD---ILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2472 ~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~---~l~~~~~~l~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
+++..++..+..++ |.+-.-|..-+|.++.+..+. +...+ .=+.++..+++++++||--|+.++..+--
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-----k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-----KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-----hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 57777887776655 666667888899988886421 11111 23477888999999999999999887653
|
|
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.60 E-value=60 Score=46.70 Aligned_cols=217 Identities=16% Similarity=0.114 Sum_probs=124.2
Q ss_pred CCCCHHHHHHHHhhhHHhHhhhcchh---HHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHHhh----hCcchhhhhcH
Q 000051 1310 NTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKG----FGISSLKKYGI 1379 (2612)
Q Consensus 1310 ~~~~~~Vq~~~~~~L~~lv~~~~~~~---~~li~~ll~~L~~~~---~~~~R~~Aa~~L~~l~~~----lg~~~l~~~~i 1379 (2612)
..+--+||....+|+-.++...++.. -..+-.++..+.+.. +...-+.+..+|..+... ++...+. .+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~--~l 929 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL--DL 929 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH--HH
Confidence 34445677777788877777666542 122334444444433 223334445555544432 2222222 56
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh---------------------------hHHHHHHHHHHHcCCC
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP---------------------------YVIQMLPLLLVAFSDQ 1432 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~---------------------------~v~~ilp~ll~~l~D~ 1432 (2612)
++.+......+.|.+.--.|+-.|-.+.+.+.+.+.. .-.-++..+.++..|.
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 6766666655556666677777777777665432211 1123455666777899
Q ss_pred CHHHHHHHHHHHHHHHH----hhcHHhH----HhHHHHHHhhhc---CCChhhHHH-------HHHHHHHHHhhCchhhh
Q 000051 1433 VVAVREAAECAARAMMS----QLSAQGV----KLVLPSLLKGLE---DKAWRTKQS-------SVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1433 ~~~VR~aa~~al~~i~~----~l~~~~v----~~ilp~Ll~~L~---~~~w~~r~~-------a~~~L~~ia~~~p~~l~ 1494 (2612)
.+.||..|++++=++.. .+++..+ -.++-+|+++-. .++|..+.- .+..++.++...++++.
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999888877765 3444322 223333333211 245654433 56677777776666543
Q ss_pred hh---------hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1495 QC---------LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1495 ~~---------L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
.. ...++..+.....|.++++..+|.+++..+..
T Consensus 1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 32 12334444455678899999999999987654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2612 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-27 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-23 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-23 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 421 bits (1084), Expect = e-125
Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 18/472 (3%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386
S ++ ++ L +L R A +A + G I L +G
Sbjct: 4 HHHSDSQQSIKVLEELFQKL-SVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446
+ D+ +A A+ A L EPY++Q++P + ++ ++ A +
Sbjct: 63 IKDKKTAANAMQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLIS 121
Query: 1447 MMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
+++ ++ +K +LP L + + W+ K + + AM A Q++ +P+++P L+
Sbjct: 122 IVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
E + DT +V++A A+ + + N +I +P+L+ + DP ++ +L TTF
Sbjct: 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTF 240
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
V V +L+++VP++ RGL ER K+K+A I+ NMC LV +P+ + P++G LLP +K
Sbjct: 241 VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300
Query: 1626 KVLVDP-IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684
PE R V RA+ +L R +G D + L A + S Q ++E
Sbjct: 301 SNFATIADPEAREVTLRALKTLRR-VGNVGEDDAIPELSHA-------GDVSTTLQVVNE 352
Query: 1685 VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-----YLPRSLGVQFQNYLQQVL 1739
+L I+ + I R + Y+ L + +
Sbjct: 353 LLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEF 412
Query: 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1791
+ D + ++ +L R
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRY 464
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 9e-27
Identities = 65/404 (16%), Positives = 139/404 (34%), Gaps = 46/404 (11%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR 1709
+ ++ L L ++ R A ++ L + EH ++ + ++
Sbjct: 9 SQQSIKVLEELFQKLSVATAD-NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67
Query: 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769
+ +L + Y+ Q++PAI ++++ ++ A +V
Sbjct: 68 TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127
Query: 1770 TTSLPLLLPAVEDGIFNDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828
++ LLP + + I N W+ + + + ++ + E
Sbjct: 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE------------ 175
Query: 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK---TIVANTPKTLKEIMPV 1885
+I VL +E + D V+ AA V N K+I
Sbjct: 176 ----LIPVL-----SETM-------WDTKKEVKAAATAAMTKATETVDN-----KDIER- 213
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ +LI +A + V V ++ L ++P+LSRGL + ++ +
Sbjct: 214 FIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV 273
Query: 1946 GLSEVMAS--AGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGMQAID 2002
+ + M + F+ +L+P +++ + E RE A TL + G D
Sbjct: 274 -IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR-VGNVGED 331
Query: 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVH 2046
+ +P L HA + T + LK ++ + +
Sbjct: 332 DAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGA 375
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 7e-15
Identities = 37/256 (14%), Positives = 86/256 (33%), Gaps = 40/256 (15%)
Query: 1874 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS--IIPILSRG 1931
+ + + ++ L L+ ++++ R + + L++G
Sbjct: 3 HHHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1932 LKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
+KD +A+ S + ++ +L+P I T + E++ A
Sbjct: 63 IKDKKTAANAMQAV--AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLI 120
Query: 1991 TLFKSAGMQAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
++ + AI ++P L +A+ + Q L
Sbjct: 121 SIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILA------------------------ 156
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
A A+ + A + + ++P L M D +V++ A A T +D
Sbjct: 157 --------AFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208
Query: 2108 EGVESLVSELLKGVGD 2123
+ +E + L++ + D
Sbjct: 209 KDIERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-10
Identities = 55/447 (12%), Positives = 139/447 (31%), Gaps = 82/447 (18%)
Query: 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTAL 2022
+++ + L + + R ++ ++ + L ++D +T+ A+
Sbjct: 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAM 73
Query: 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082
+ I + L E ++ ++PA+ +
Sbjct: 74 QAVAHIAN-----------------------QSNLSPSVEP-------YIVQLVPAICTN 103
Query: 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYK 2141
G+ D ++QS+A E ++ ++ +++L+ L + + + +
Sbjct: 104 AGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP-KEVQPSYIKVIRDAI 2200
+K + P +I L + D+ AAA A+++ +V K+++ +I + I
Sbjct: 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCI 222
Query: 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 2260
+ + G P L ++P+ +GL ++ ++A+
Sbjct: 223 ADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV--------- 273
Query: 2261 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320
I + +++ D + PFL +L
Sbjct: 274 -----------IIDNMCKLVEDP---------------------QVIAPFLGKLLPGLKS 301
Query: 2321 CLQDSTR-TVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379
R AL L + + ++S AG L + +LK
Sbjct: 302 NFATIADPEAREVTLRALKTLRRVGNVGEDDAIP-----ELSHAGDVSTTLQVVNELLKD 356
Query: 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ + + + + + +
Sbjct: 357 ETVAPRFKIVVEYIAAIGADLIDERII 383
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-10
Identities = 53/345 (15%), Positives = 117/345 (33%), Gaps = 21/345 (6%)
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
L+ + ++ + E + VA L +V + + +++P L+ + + + + + +
Sbjct: 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAIL 155
Query: 1946 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005
M A K Q+ M ELIP + + D+ EV+ +A A + ++ + I+ +
Sbjct: 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI 215
Query: 2006 PTLLHALEDDQTSDTALDGLKQILSVR-----TTAVLPHILPKLVHLPLSAF-------- 2052
P+L+ + D + L V T +++ +L + ++ +
Sbjct: 216 PSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII 275
Query: 2053 -NAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGV 2110
N L +V P LG +LP L S D + + + A + TL
Sbjct: 276 DNMCKLVEDPQVIAP----FLGKLLPGLKSNFATIADPEAREVTLRALK--TLRRVGNVG 329
Query: 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170
E L GD +++ + L +V+ + + LI
Sbjct: 330 EDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWF 389
Query: 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
++ + + + ++ G
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE 434
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 32/219 (14%), Positives = 81/219 (36%), Gaps = 13/219 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208
++ ++ L LS + + ++ + E + +DK+
Sbjct: 10 QQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKT 68
Query: 2209 RKKKGGPILIPGFC--LPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
+ L +++P L+P + E++ A+ L ++ +
Sbjct: 69 AANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322
++K ++P L I + WQ K AIL+ S ++ + +P+L + +
Sbjct: 129 VAIK-ALLP---HLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM 184
Query: 2323 QDSTRTVRSSAALALGKLSALST--RVDPLVGDLLSSLQ 2359
D+ + V+++A A+ K + ++ + L+ +
Sbjct: 185 WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-05
Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 35/240 (14%)
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
+ S + ++ +L L V+ A R I + + L G + V + L +
Sbjct: 7 SDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLN--GNIIEHDVPEHFFGELAKGI- 63
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQ-----LADLLQELLNLASSPSW----AARHGSVLV 2452
D +A + ++ + L+ + A + A + +
Sbjct: 64 -KDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI 122
Query: 2453 FATFLRHNPSAISMSPLFLSILDRLKSSLKDE-KFPLREASTKALGRLLLHQIQSGPANT 2511
NP AI +L L +++ + K+ + A A + + +
Sbjct: 123 VNAV---NPVAIKA------LLPHLTNAIVETNKWQEKIAILAAFSAM----VDAAKDQV 169
Query: 2512 TV-VVDILASVVSALHDDSSEVRRRALSALKSVAK--ANPSAIMVHVALFGPALAECLKD 2568
+ + +++ + + D EV+ A +A+ + N + F P+L +C+ D
Sbjct: 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-04
Identities = 51/329 (15%), Positives = 118/329 (35%), Gaps = 44/329 (13%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLY--IRDIGLGGDNVDAGWL 1192
LF+ LS + + R A +A+ + G++ ++ G +
Sbjct: 19 LFQKLSVATADNRHEIASEVASF-------LNGNIIEHDVPEHFFGELAKGIKDKKTA-A 70
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
A+A + L P I+ + I + + +++ I I++
Sbjct: 71 NAMQ-AVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA--KHLAKDDPKVHA-----VVD 1303
+ L P N + + +EK LA + A ++
Sbjct: 130 AIKALLPHLTNAIVETNKWQEK-----------IAILAAFSAMVDAAKDQVALRMPELIP 178
Query: 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGL 1362
L + + + V+ A ++ ++ +++ + + L+ + + E L
Sbjct: 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPE---TVHLL 235
Query: 1363 AGV--VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYV 1418
V ++L + L GL +R + +R+ A++ + +C+ + ++ P++
Sbjct: 236 GATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVI-IDNMCKLVEDPQVIAPFL 292
Query: 1419 IQMLPLLLVAFSDQVVAVREAAECAARAM 1447
++LP L F+ +A EA E RA+
Sbjct: 293 GKLLPGLKSNFAT--IADPEAREVTLRAL 319
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 330 bits (846), Expect = 7e-93
Identities = 173/1164 (14%), Positives = 388/1164 (33%), Gaps = 115/1164 (9%)
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS 1349
+ DD VV +L +L + VQ CL PL+ +++ + L M S
Sbjct: 38 SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97
Query: 1350 DKYGERRGAAFGLAGVVK-------GFGISSLKKYGIAATLREGLADRNSAKRREGALLA 1402
DK R ++ GL V+ G +++ I L +A + + AL
Sbjct: 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157
Query: 1403 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462
+ + G L + +L LL + +AVR+ A ++ ++
Sbjct: 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 217
Query: 1463 LLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
LL L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++
Sbjct: 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277
Query: 1522 ALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
A + P +++++ L LT DPN + + D +
Sbjct: 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
+ S + ++ AA+ + + S T + + + + P + + V++
Sbjct: 338 EYSDD---DDMSWKVRRAAAKCLDAVVS--TRHEMLPEFYKTVSPALISRFKEREENVKA 392
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
A SL++ ++ ++ + ++ +I
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-----------------QVPNI 435
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES--VRD 1755
+ + + + R + L L ++ ++P I+ L D++ S ++
Sbjct: 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 495
Query: 1756 AALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
AL +V++ +++ L+P V + + ++I ++ + L+ +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI----- 550
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+ L + S D + I+ L D+ V++ A+ I
Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAA--------------DIDQEVKERAISCMGQI 596
Query: 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVA--GRALGELVRKLGERVLPSIIPILS 1929
+ N L +P + + L + + V G ++ VL +PIL+
Sbjct: 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 656
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
L+ + + G L ++ + S + +D ++ + + +S + V + A
Sbjct: 657 SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 716
Query: 1990 STLFK---SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL-SVRTTAVLPHILPKLV 2045
+TL K S+ + I+ L+ + AL + ++ T L+
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105
+ + + + + + + + A
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC-------------------------- 810
Query: 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165
+ ++V + ++ V +++++ L+ + L + S ++ S
Sbjct: 811 -PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL-SGQLELKSVILEAFSSP 868
Query: 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 2225
+AA AL + E P ++ I + K L
Sbjct: 869 SEEVKSAASYALGSISVGNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKP 927
Query: 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285
++ + + L+ R A LG+L + E L +
Sbjct: 928 YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISG---------S 978
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL----- 2340
+S++++ + I + P L F+K L+D VR A +
Sbjct: 979 SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1038
Query: 2341 SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400
S + +D ++ L + +V IRE + G KH +V + IR +
Sbjct: 1039 SLIRDLLDTVLPHLYNETKVRKELIREVEM----GPFKH---TVDDGLDIRKAAFECMYT 1091
Query: 2401 YHDDDHVRVSAASILGIMSQCMED 2424
D R+ L + ++D
Sbjct: 1092 LLDSCLDRLDIFEFLNHVEDGLKD 1115
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 271 bits (692), Expect = 7e-74
Identities = 174/1167 (14%), Positives = 381/1167 (32%), Gaps = 91/1167 (7%)
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
L+ + + + K+V + ++L D + +VQ+ L + S +K ++ ++V
Sbjct: 30 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQ 1598
TL + + + I L+T A S + L V + + R SA K++
Sbjct: 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 1599 IVGNMCSLVTE-----PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
+ ++ + ++ + +L + L P VR A+G L+ G
Sbjct: 150 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRA 1710
F DL+ LL L ++S Q ++ + G Y E I+P +++ C+
Sbjct: 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 269
Query: 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYA 1769
+R+ + F+ R + ++ ++ L L D N + D + +
Sbjct: 270 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329
Query: 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829
+ +W++R+++ + L + T + L E A
Sbjct: 330 --DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV----VSTRHEMLPEFYKTVSPALISRF 383
Query: 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889
V + +V A + L+ +P ++
Sbjct: 384 KEREENV-----KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKDPSASR--RQGVC 1944
L + S + RQ L ELV L + +P ++P + L D S+S +
Sbjct: 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
L ++ + + L+P + + D ++ A L L K
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP------ 552
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
D +S A +K + T + + + + +G +
Sbjct: 553 --------LDQPSSFDATPYIKDLF----TCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 2065 GPGLNFHLGTILPALLSAMGDDDMDVQSLA--KEAAETVTLVIDEEGVESLVSELLKGVG 2122
G L L L L + ++ + ++ A + + + V L +
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEA-PNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
NQ +++ + + KN L ++ L L+S+SD A L+ +
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 2182 ASVPK-------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIF 2234
P + I ++R + +++ G + L +
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
+A +Q+ + + + + KE + + + R ++ L
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354
+L + + +L++ ++ + V+S+A+ ALG +S +
Sbjct: 841 SLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYL---PF 894
Query: 2355 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 2414
+ S + +L +LK ++ A ++++L ++ R A
Sbjct: 895 VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 954
Query: 2415 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 2474
LG ++ + L L L S S AR V + +P I PL + +
Sbjct: 955 LGKLTLIDPETLLPRLKGYL----ISGSSYARSSVVTAVKFTISDHPQPI--DPLLKNCI 1008
Query: 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH-------- 2526
+L+D +R + ++ ++ +L + +
Sbjct: 1009 GDFLKTLEDPDLNVRRVALVTFNSAAHNK---PSLIRDLLDTVLPHLYNETKVRKELIRE 1065
Query: 2527 ----------DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLA 2576
DD ++R+ A + ++ + + + F + + LKD +++
Sbjct: 1066 VEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGLKD-HYDIKML 1122
Query: 2577 AERCAVHAFQLTRGIIYSRSTKIYNRL 2603
V L + R ++ L
Sbjct: 1123 TFLMLVRLSTLCPSAVLQRLDRLVEPL 1149
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 199 bits (505), Expect = 3e-51
Identities = 162/1210 (13%), Positives = 372/1210 (30%), Gaps = 151/1210 (12%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191
S L + ++ S+ + R A L T L + S + + ++ + V
Sbjct: 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV---- 64
Query: 1192 LGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN 1251
+ L ++ + I+ L + + +R +I + +
Sbjct: 65 --QNLAVKCLGPLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGELPPAS 121
Query: 1252 V-----SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL 1306
+ + L + +E + E + I L++ +++ LL
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181
Query: 1307 DVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGV 1365
L +P AV++ L L+ S + L+ LL +L K+D R +A +
Sbjct: 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241
Query: 1366 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425
+ G + L + + + RE + AFE + + P+V ++ +
Sbjct: 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301
Query: 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 1485
L + + + AM + +D +W+ ++++ + L A+
Sbjct: 302 LKYLTYDPNYNYDDEDEDENAMDA-DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360
Query: 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-------------- 1531
+ L + + P L + V++ A + +
Sbjct: 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420
Query: 1532 --------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIV 1581
++ ++V L + + + T+ +L + + +LVP +
Sbjct: 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
Query: 1582 HRGLRERSAETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++S+ + K A + P+ P++ L+P V + DP ++ S A
Sbjct: 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEAL 540
Query: 1641 RAIGSL---IRGMGEENFPDLVSWL-------LDALKSDNSNVE-RSGAAQGLSEVLAAL 1689
L IR + + + D ++ + LK+ + + E + A + +++ L
Sbjct: 541 LVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 1690 GTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747
G + I + L L + + L + +P + L
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 1748 DENESVRDAALGAGHVLVEHYATTSLP----LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
+++ L A +L+++Y+ + +L + I + + Q ++ L L
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 1804 FKVAGTSGKAL---------LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM--- 1851
+ K L +G + A ++ N L
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 1852 ---VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE-RRQVAGR 1907
+L+ +Q+ + K + A T KE V+ + S S++ R +A
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQG------------------------- 1942
+LGE+ + + ++ PS +
Sbjct: 841 SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEIT 900
Query: 1943 --------VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994
+ L E+++SA L +++ + + + R L
Sbjct: 901 SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 960
Query: 1995 SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN- 2053
+ + L+ + + +K +S + P + + L
Sbjct: 961 IDPETLLPRLKGYLIS--GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF-LKTLED 1017
Query: 2054 ---------AHALGALAEVAGPGLNFHLGTILPALLS------------AMG------DD 2086
+ A + L T+LP L + MG DD
Sbjct: 1018 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDD 1077
Query: 2087 DMDVQSLAKEAAET-VTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 2145
+D++ A E T + +D + ++ + G+ D I+ + ++
Sbjct: 1078 GLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPS 1136
Query: 2146 YLVDEAPNMISTLIVLLS------------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
++ ++ L + + +A A++ ++ E P
Sbjct: 1137 AVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMS 1196
Query: 2194 KVIRDAISTS 2203
+ S
Sbjct: 1197 EFQSQISSNP 1206
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 157 bits (397), Expect = 2e-38
Identities = 150/898 (16%), Positives = 306/898 (34%), Gaps = 82/898 (9%)
Query: 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777
L L + + ++V+ IL L D+N V++ A+ LV + ++
Sbjct: 29 DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88
Query: 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837
+ + +D ++R S L ++ ++ S + L + I L
Sbjct: 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL----------AANVCKKITGRL 138
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897
+ +SV+ AL + +++ L P ++ L+ L S
Sbjct: 139 -----------TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGK 1956
R+ ALG LV G V +I L L K+ S S + ++ + AG
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALE 2013
++ +++++IP + E+RE AF + + + + I+ L L
Sbjct: 248 -RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN-------AHALGALAEVAGP 2066
D + + + + + A L A+
Sbjct: 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
L T+ PAL+S + + +V++ A ++ + ++
Sbjct: 367 MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186
L + PN++ L + + T + L+ +V +P
Sbjct: 427 -------------------MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467
Query: 2187 EVQPSYIKVIRDAISTSRDKE--RRKKKGGPILIPGFC-------LPKALQPLLPIFLQG 2237
+ ++ I + DK K + +Q L+P +
Sbjct: 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 527
Query: 2238 LISGSAELREQAALGLGELIEV------TSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKS 2290
+ ++ +A L +L++V S ++ + I+ + Q VK
Sbjct: 528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKE 587
Query: 2291 AILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 2350
+S + II G L LP F++ L++ + + AL L S L + P+
Sbjct: 588 RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPV 647
Query: 2351 VGD----LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+G+ L S L+ + ++ L+AL ++K+ S+++A+ V L L+ D H
Sbjct: 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 2407 VRVSAASILGIMSQCMED---GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463
V A S L +++ +L EL+ L SP S ++ F +
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAML--DFFQALVVT 765
Query: 2464 ISMSPLFLSILDRLKSSLKDEKFP-LREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
+ + ++ +L L + + + S ++ + + ++ P VV V
Sbjct: 766 GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 825
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ +R AL +L V + + + + E S V+ AA
Sbjct: 826 KN-SRSTDSIRLLALLSLGEVGHHIDLSGQLELK---SVILEAFSSPSEEVKSAASYA 879
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 142 bits (358), Expect = 7e-34
Identities = 150/1006 (14%), Positives = 308/1006 (30%), Gaps = 141/1006 (14%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA--VHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ + +DP + + ED
Sbjct: 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380
Query: 1178 RDIGLGGDNV----------------DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLI 1221
+NV A+ + +P I+ L
Sbjct: 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440
Query: 1222 SRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
+ + + + R N +++ ++ +L P LN K+S ++
Sbjct: 441 -KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN----LKI 495
Query: 1279 GVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ-----------RAVSSCLS 1325
+ + + + P V A+V ++ + P + + +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
P L + + +L +D E + A G + +L
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
+N R L P + + +P+L A++ A
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 1446 AMM----SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
++ L+A + VL L + + Q ++ L +A P LS+ I+
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
+L L + A L +++ LL LT P
Sbjct: 736 NELIG-LVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP------------ 782
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
V + S AL ++S + K + C PK+ +G +
Sbjct: 783 -------VYSQSTAL--------THKQSYYSIAKCVAALTRAC-----PKEGPAVVGQFI 822
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
+VK +R +A ++G + + +L S +L+A S + V +S A+
Sbjct: 823 QDVKN--SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYA 879
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
L + Y +L +I Q + +L + + + V + Y++ +
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLH----SLKEIISSASVVGLKPYVENIWAL 935
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
+L E R+ L T LP L + + R S V +
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS----GSSYARSSVVTAVKF 991
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
+ H + I +L + D L+VR
Sbjct: 992 TISD-----------------------HPQPIDPLL-----KNCIGDFLKTLEDPDLNVR 1023
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS------------------ERRQ 1903
+ AL + + N P +++++ ++ L + + R+
Sbjct: 1024 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRK 1083
Query: 1904 VAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQG--VCIGLSEVMASAGKSQLL 1960
A + L+ +R+ + + + GLKD + + + LS + SA +L
Sbjct: 1084 AAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143
Query: 1961 SFMDELIPTIRTALCDSIL--EVRESAGLAFSTLFKSAGMQAIDEI 2004
++ L T T + + + E + L S + A + I E
Sbjct: 1144 RLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 104 bits (258), Expect = 4e-22
Identities = 72/537 (13%), Positives = 162/537 (30%), Gaps = 80/537 (14%)
Query: 2075 ILPALLSAMGDDDMDVQSLA----KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR 2130
+ LL M D D + +A + ++ +D++ +V +LK + D ++
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP----- 2185
+ +G K + ++ TL + + L V+ +P
Sbjct: 67 LAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 2186 ----KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP----LLPIFLQG 2237
V + AI+ D + + + L +L L
Sbjct: 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183
Query: 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS 2297
L S +R++ + LG L+ + + L+ + + ++
Sbjct: 184 LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE----HLLSELSKNDSMSTTRTYIQCIA 239
Query: 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357
I R+ G + +L + ++ ++
Sbjct: 240 AISRQAGHRIGEYLEK------------------------------------IIPLVVKF 263
Query: 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 2417
V D +RE + A + ++ K V V + LK L Y + + +
Sbjct: 264 CNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323
Query: 2418 MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477
+ +D + + SW R + + + + ++ L
Sbjct: 324 DADGGDD--DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE--MLPEFYKTVSPAL 379
Query: 2478 KSSLKDEKFPLREASTKALGRLL--------------LHQIQSGPAN--TTVVVDILASV 2521
S K+ + ++ A LL + P + V +I+ ++
Sbjct: 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439
Query: 2522 VSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAE 2578
+ + S + R+ + L + P A+ H+ + P + L D S+ L +
Sbjct: 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKID 496
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 74.0 bits (180), Expect = 6e-13
Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 4/233 (1%)
Query: 2350 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRV 2409
+ +LL + SD R L L+ + + +V ++ L+ + V+
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 2410 SAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469
A LG + +++ Q+ ++ L S R S + T + P A S S L
Sbjct: 67 LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 126
Query: 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GPANTTVVVDILASVVSALHD 2527
++ ++ L + S + ++ + S G IL ++ L
Sbjct: 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 186
Query: 2528 DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
VR+R + AL + + + + V L L+E K+ S +C
Sbjct: 187 PRLAVRKRTIIALGHLVMSCGNIVFVD--LIEHLLSELSKNDSMSTTRTYIQC 237
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 52.8 bits (125), Expect = 2e-06
Identities = 125/1048 (11%), Positives = 301/1048 (28%), Gaps = 86/1048 (8%)
Query: 267 ILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALE 326
++ +G L+ V + + L + ++ R ++ + + E
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSA 125
Query: 327 AMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATE--GKYLNSLSLTICKFLLSCYK 384
K + G +A + AL +++ G L + +I LL
Sbjct: 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 185
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE--ALRRGHLRCLRVICTN 442
V+ + A+ +I+ DL+ S L + + + R +++C+ I
Sbjct: 186 SP-RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR- 243
Query: 443 TDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSL 502
Q +G ++ + K D + + ++ ++++
Sbjct: 244 -----QAGHRIGEYLEKIIPLVVKFCNVDDDE-----LREYCIQAFESFVRRCPKEVYPH 293
Query: 503 VSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP 562
VS + + L+ D + +
Sbjct: 294 VST-----IINICLKYLTYDPNYNYDDEDEDENAMDA---DGGDDDDQGSDDEYSDDDDM 345
Query: 563 SWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFL 622
SW +R+ A ++++ + F V +I ++
Sbjct: 346 SWKVRRAAAKCLDAVVSTRHEM-------LPEFYKTVSPALISRFKEREENVKADVFHAY 398
Query: 623 PSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKR---DAVWQRLHKCLRAV 679
S+ Q + + A + + S P+IV + + + C +
Sbjct: 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML 458
Query: 680 GFNVIEI---VSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEK 736
V + ++ + L ++ SL S++ + A++ L ++ + +
Sbjct: 459 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ 518
Query: 737 HLKDLPDCYVHDSLSENDIQVFYTPEGML----------SSEQGVYIAEIVAAKNTKQSK 786
L V D + + + ++ S + YI ++ +
Sbjct: 519 ALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
++ + +G ++ ++ + + + + + T K
Sbjct: 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGS 638
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
+ +R + L+ L S L L+K L + ++ V
Sbjct: 639 PLKIDLRPVLGEGVPILASFLRKNQRALKLG---TLSALDILIKNYSDSLTAAMIDAVLD 695
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVH-VDSDLIPSVGEAAKNKESLCLFERI 965
E L L + M + A+ T L + + + ++ + ++
Sbjct: 696 E-LPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
+ + + + ++ + S H + K + L
Sbjct: 755 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 814
Query: 1026 ISVLYHVLGVVPSYQA----------AIGSALNELCLGLQPNEVASALHGVYTKDVHVRM 1075
+V+ + V + ++ ++G + + L Q + L + V+
Sbjct: 815 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKS 874
Query: 1076 ACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS-- 1133
A A + ++S +LPE + + + + + ++I Y
Sbjct: 875 A---ASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 931
Query: 1134 ---GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
L K + R AE L P+++ L L + A
Sbjct: 932 IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY---------LISGSSYAR 982
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+ + + I FL + L D + +VR L
Sbjct: 983 SSVVTAVKFTISDHPQPIDPLLKNCIGDFL--KTLEDPDLNVRRVALVTFNSAAHNKPSL 1040
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LL + + N+ +E L+RE
Sbjct: 1041 IRDLLDTVLPHLYNETKVRKE---LIRE 1065
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 283 bits (724), Expect = 3e-82
Identities = 120/672 (17%), Positives = 228/672 (33%), Gaps = 96/672 (14%)
Query: 1329 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ D++ ++ L+D+L +++ R + L+ + G+ + + L + +
Sbjct: 2 AADGDDSLYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSE-LLPFLTDTIY 59
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448
D + +G YV +LP L + + VR+ A + RA+
Sbjct: 60 DEDEV--LLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAIS 115
Query: 1449 SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508
+ S ++ L+K L W T ++S G + C P+ S ++ +
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA--CGLFSVCYPRVSSAVKAELRQYFRNLC 173
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568
+D P V+ A + L + V++ + S
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKS------------------------------- 202
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628
++P+ + + A + N+ L+ + L++P +++
Sbjct: 203 -------EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA 251
Query: 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688
D VR + A L + +G E + L D R+ A+ + E
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311
Query: 1689 LG-----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743
L V ILP I S V+ ++ L LG N ++ +LP L
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL 369
Query: 1744 DGLADENESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
L DE VR + + E L LLPA+ + + WR+R + +E + L
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVR 1861
LG + +E L +L M D ++R
Sbjct: 430 -------------------------------AGQLGVEFFDEKLNSLCMAWLVDHVYAIR 458
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-ERV 1920
+AA K +V K + ++ +++ + R + L G +
Sbjct: 459 EAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
++P + R DP A+ R V L ++ S L E+ P + D ++
Sbjct: 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKLTQDQDVD 573
Query: 1981 VRESAGLAFSTL 1992
V+ A A + L
Sbjct: 574 VKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 162 bits (410), Expect = 2e-41
Identities = 96/665 (14%), Positives = 204/665 (30%), Gaps = 95/665 (14%)
Query: 1888 NTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
LI L + + R + + L + LG ER ++P L+ + D +
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-ALAEQ 71
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L G + + L+P + + VR+ A + + ++
Sbjct: 72 LGTFTTLVGGPEYV---HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066
L+ L + RT A G +
Sbjct: 129 PLVKRLAGGD-----------WFTSRT---------------------SACGLFSVCYPR 156
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES-LVSELLKGVGDNQ 2125
+ + + DD V+ A V++ + V+S ++ D Q
Sbjct: 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
S+R + + L D ++ TL D + + + +V
Sbjct: 217 DSVRLLAVEACVNIAQ--LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG 274
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
E+ + L+P F + AE+
Sbjct: 275 PEITKTD-------------------------------------LVPAFQNLMKDCEAEV 297
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305
R A+ + E E S + ++ P I+ + VKSA+ S + + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS---ALSTRVDPLVGDLLSSLQVSD 2362
+ L F+ L+D VR + L ++ + L+ ++ + +
Sbjct: 358 --DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG-IMSQC 2421
+R AI+ + + G ++ S+ + +R +A S L ++ +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 2422 MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2542 SVAKA 2546
++ A
Sbjct: 584 VLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-37
Identities = 106/656 (16%), Positives = 218/656 (33%), Gaps = 93/656 (14%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716
++ L+D L++++ + R + + LS + ALG L + + + V
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776
+G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126
Query: 1777 LPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
+ + +W R S+ L
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFS-------------------------------VCYP 155
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI--VANTPKTLKEIMPVLMNTLISS 1893
+ + E+ + SD + VR+AA V EI+P+ +
Sbjct: 156 RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFS----NL 211
Query: 1894 LASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
+ R +A A + + L E + ++P L + +D S R V +E+
Sbjct: 212 ASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK 271
Query: 1953 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAIDEIVPT 2007
+ G +L+P + + D EVR +A ++ + +I+P
Sbjct: 272 AVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328
Query: 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
+ + D V++ A + L+ + G
Sbjct: 329 IKELVSDANQH------------VKSAL------------------ASVIMGLSPILGK- 357
Query: 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGVGDNQA 2126
+ + +LP L+ + D+ +V+ + V VI + +SL+ +++ D +
Sbjct: 358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW 416
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV-LLSDSDSTTVAAAWEALSRVVASVP 2185
+R + + + V+ +++L + L D AA L ++V
Sbjct: 417 RVRLAIIEYMPLL---AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
KE + I A+S + R +L + +LP L+ A
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299
+R A L ++ + +L+ V PI L ++ D+ VK L+++
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPI---LEKLTQDQ-DVDVKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 5e-37
Identities = 90/624 (14%), Positives = 202/624 (32%), Gaps = 64/624 (10%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGL 2025
I + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED--------- 62
Query: 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085
V A LG + G ++ +LP L S
Sbjct: 63 ----EVLLAL------------------AEQLGTFTTLVGG--PEYVHCLLPPLESLATV 98
Query: 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSK 2144
++ V+ A E+ ++ +E+ L+K G + + R S+ L Y
Sbjct: 99 EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158
Query: 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204
+ E + L SD AA L + + S I + +++
Sbjct: 159 SAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 2205 DKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
R + + ++P Q S +R A EL +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IALKPFLPQLQTTFIK 2320
+ K ++P ++ D +V++A + + Q+ +
Sbjct: 276 EITKTDLVPA---FQNLMKDCEA-EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331
Query: 2321 CLQDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377
+ D+ + V+S+ A + LS + ++ L+ L+ L+ +R I++ L V
Sbjct: 332 LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391
Query: 2378 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL-N 2436
+ G + + + +L VR++ + +++ + + L L
Sbjct: 392 EVIG---IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA 448
Query: 2437 LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKAL 2496
+A R + + + + +I+ ++ + D + R + +
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFCI 504
Query: 2497 GRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 2556
L Q +L +V+ D + VR +L+ + ++ +
Sbjct: 505 NVLSEVCGQD-----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV 559
Query: 2557 LFGPALAECLKDGSTPVRLAAERC 2580
P L + +D V+ A+
Sbjct: 560 K--PILEKLTQDQDVDVKYFAQEA 581
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 73/434 (16%), Positives = 143/434 (32%), Gaps = 22/434 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVIRDAISTSRDKE 2207
D++ I+ LI L + D + + LS + ++ E + + + D I +
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 2208 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267
+ P+ + LLP +R++A L + S L+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 2268 FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTR 2327
+P+ L + +++ S+ + A+K +L+ F D T
Sbjct: 126 HFVPLVKRLA----GGDWFTSRTSACGLFSVCYPRVSSAVK---AELRQYFRNLCSDDTP 178
Query: 2328 TVRSSAALALGKLSALSTR---VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384
VR +AA LG+ + + ++ + +R + A + + +
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-DLLQELLNLASSPSW 2443
A V L+ VR A + + + DL+ NL
Sbjct: 239 LEA---LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
R + F + + + + IL +K + D ++ A + L
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563
+ + +L ++ L D+ EVR +S L V + + L PA+
Sbjct: 356 GKD-----NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL--PAIV 408
Query: 2564 ECLKDGSTPVRLAA 2577
E +D VRLA
Sbjct: 409 ELAEDAKWRVRLAI 422
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 7e-11
Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 17/235 (7%)
Query: 2354 LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAAS 2413
L+ L+ D +R + L + G + + L D + +D+D V ++ A
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALG---VERTRSELLPFLTDTI-YDEDEVLLALAE 70
Query: 2414 ILGIMSQCMEDGQLAD-LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472
LG + + + LL L +LA+ R +V + + + F+
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-LEAHFVP 129
Query: 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEV 2532
++ RL + F R ++ + V ++ + DD+ V
Sbjct: 130 LVKRL---AGGDWFTSRTSACGLFSVCYPRVSSA------VKAELRQYFRNLCSDDTPMV 180
Query: 2533 RRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
RR A S L AK + + P + D VRL A V+ QL
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEII--PMFSNLASDEQDSVRLLAVEACVNIAQL 233
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-07
Identities = 78/548 (14%), Positives = 159/548 (29%), Gaps = 67/548 (12%)
Query: 859 VQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSR---- 914
V L+ L + + P + H LP L ++ +V D A E+L +S
Sbjct: 64 VLLALAEQLGTFTTL-VGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP 120
Query: 915 ----------CTAMPLCNWALDIATALRLIVTEEVHVDS----DLIPSVGEAAKNKESLC 960
+ +W +A L V S +L + +
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDPLL 1018
+ V S + P+ + + + L + + + +
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 1019 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTK-----DVHV 1073
+ M ++ + + EL + P + L + + V
Sbjct: 239 LEALV-MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1074 RMACLNAVKCIPAVSTRSLPENI---EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
R A + VK + EN+ ++ + V D + V A + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1131 DYS------GLFKALSHSNYNVRLAAAEALAT-----ALDEYPDSIQGSLSTLFSLYIRD 1179
D + L VRL L + + S+ ++ L
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE----- 412
Query: 1180 IGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA 1239
DA W R I + A L + + L L D +R +
Sbjct: 413 --------DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464
Query: 1240 GIMIIDKHGRDNV-SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 1298
+++K G++ + + P + L R + L++ +D
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSG------DPNYLHRMTTLFCINVLSEVCGQDITTK 518
Query: 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRG 1357
H ++ +L + P V+ V+ L + + + + V +L++L + +
Sbjct: 519 H-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577
Query: 1358 AAFGLAGV 1365
A L +
Sbjct: 578 AQEALTVL 585
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 4e-40
Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 2/214 (0%)
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPK 1514
+ + LE+K W ++ S+++L + P+ + +V L +V+T D++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574
+ + L + + ++ + L + K ++ L+ + SL
Sbjct: 73 LVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
+ L ++ K + A + + + LL + K L +P P
Sbjct: 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPT 191
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
VR +A A+G+LI+ MG++ L++ + +
Sbjct: 192 VRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 3e-20
Identities = 35/215 (16%), Positives = 83/215 (38%), Gaps = 9/215 (4%)
Query: 1334 EAPTLVSRL---LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG-IAATLREGLAD 1389
+ ++S++ ++ K+ R+ + L ++ +YG + + L++ +
Sbjct: 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
++ A L + L + F Y +P LL F ++ V A A A+ +
Sbjct: 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLS-QCLPKIVPKLTEV 1507
S + S+++ L +K K + + P L+ + L + L +
Sbjct: 128 STSLE---AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542
L + P V+ + AL + ++ + + L+ +
Sbjct: 185 LNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---LGTVYFEHILPDIIRNCSH- 1707
+ + D L+ R + + L ++L L + ++ + + +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWT-LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767
+ L + L +F NY +P++L+ ++ +V A A +
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREA---IDAI 125
Query: 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807
YA+TSL ++ + + N N ++ + + L +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 39/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPI 1632
L+ + + L E+ +K++ +++ + + PK G L+ +KKV+ D
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSN 70
Query: 1633 PEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
+ ++A + + L +G+ + V LL+ K NV L E + A+
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNV-----VTALREAIDAI 125
Query: 1690 -GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ--FQNYLQQVLPAILDGL 1746
+ E I+ + S++ SV+ + L+ + +++ L
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ + +VRD++ A L++ ++ LL V+
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 29/240 (12%), Positives = 81/240 (33%), Gaps = 34/240 (14%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVR---KLGERVLPSIIPILSRGLKDPSA 1937
+I+ + L R+ + L +L+ KL +++ L + + S
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ ++A + ++ +P++ + V + A ++ S
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
++ +++ +L + SV++ + L+ AL
Sbjct: 131 ---LEAQQESIVESLSNKNP------------SVKSETA------LFIARALTRTQPTAL 169
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
L + +L+ + + D V+ + EA T+ ++ ++ V L++++
Sbjct: 170 NK----------KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 10/195 (5%)
Query: 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 2364
L ++ F L++ T+R + L KL + LV L + S+
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+ L + K K S+ L + +V + + +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASA-CVPSLLEKFKEKKPNVVTALREAIDAI---YAS 128
Query: 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 2484
L + ++ S+ + + + + L A L L + L +L +
Sbjct: 129 TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP 188
Query: 2485 KFPLREASTKALGRL 2499
+R++S +ALG L
Sbjct: 189 DPTVRDSSAEALGTL 203
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 13/207 (6%)
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFND-NWR 1790
L ++ D L ++ ++R +L L+ L+ A++ I D N
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1791 IRQSSVELLGDL-------LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + L L A +LLE + + A AI +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--LKEIMPVLMNTLISSLASSSSER 1901
++ S+ + SV+ + T T K+++ +L +L+ +L
Sbjct: 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPIL 1928
R + ALG L++ +G++ + ++ +
Sbjct: 193 RDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 20/235 (8%)
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY---IKVIRDAISTSR 2204
VD M L + T + E L +++ PK Y + ++ I+
Sbjct: 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS 69
Query: 2205 DKERRKKKGGPILIPGFCLPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVT 2260
+ G + + L K +P L+ + + + T
Sbjct: 70 NVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST 129
Query: 2261 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA--LKPFLPQLQTTF 2318
S ++ +E ++ + ++ VKS ++ + + K L L T+
Sbjct: 130 SLEAQQE-------SIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTA 2372
+K L + TVR S+A ALG L L D V LL+ + + A I+E A
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMG--DKAVTPLLADVDPLKMAKIKECQEKA 234
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 40/206 (19%)
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSER 1901
+++ Y + ++R+ +L V + ++ + PK L++ L + S+
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 1902 RQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+AG+ L L + L +R + +P L K+ + + + + AS
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 1959 LL------------------------------------SFMDELIPTIRTALCDSILEVR 1982
+ L ++ L + VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTL 2008
+S+ A TL K G +A+ ++ +
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 12/202 (5%)
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ + D L+ +R+ L L+ +L K + V ++ K + +
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 2407 VRVSAASILGIMSQCMEDG---QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463
+ A L ++++ + + + LL
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 2464 ISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVS 2523
+ + + SL ++ ++ + + R L + Q N ++ + S+V
Sbjct: 133 --------AQQESIVESLSNKNPSVKSETALFIARAL-TRTQPTALNKKLLKLLTTSLVK 183
Query: 2524 ALHDDSSEVRRRALSALKSVAK 2545
L++ VR + AL ++ K
Sbjct: 184 TLNEPDPTVRDSSAEALGTLIK 205
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 12/163 (7%)
Query: 2427 LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL-KDEK 2485
L+ + ++ + W R S+ V L +P + + +++ LK + KD
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE--YGALVSALKKVITKDSN 70
Query: 2486 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545
L + K L L + + S++ + V A+ ++
Sbjct: 71 VVLVAMAGKCLALLAKGL---AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 2546 ANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588
+ ++ E L + + V+ A T
Sbjct: 128 STSLEAQQ------ESIVESLSNKNPSVKSETALFIARALTRT 164
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 23/180 (12%), Positives = 58/180 (32%), Gaps = 17/180 (9%)
Query: 2407 VRVSAASILGIMSQC---MEDGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPS 2462
+R + +L + +E+G+ L+ L + + + A +
Sbjct: 31 LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
S + + L K++K + A +A+ + +T + S+V
Sbjct: 91 --RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI---------YASTSLEAQQESIV 139
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERC 2580
+L + + V+ + + + L +L + L + VR ++
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEA 199
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 5e-36
Identities = 136/970 (14%), Positives = 301/970 (31%), Gaps = 173/970 (17%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 65
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
++L K + + + D I
Sbjct: 66 SLSGLIL--------------------------------KNN--VKAHFQNFPNGVTDFI 91
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE 1674
E + D P +R+ I ++ +N+PDL+ L L S++ N
Sbjct: 92 ------KSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNT- 144
Query: 1675 RSGAAQGLSEVLAALGTVYFEH--------ILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726
GA L ++ + ++P ++ H +R + S
Sbjct: 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204
Query: 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---DG 1783
++ + + DE VR A +L+E LP + VE
Sbjct: 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264
Query: 1784 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + + E L A + + +G ++ +
Sbjct: 265 TQDQDENVALEACEFWLTL----AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903
+V + ++R+ + + E++P ++ L L ++
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKE 377
Query: 1904 VAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
LG + + + LP +IP L + L D A R C LS
Sbjct: 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHALEDDQT 2017
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A Q
Sbjct: 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 497
Query: 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN--FHLGTI 2075
+ L + A+G LA+ G LN ++ +
Sbjct: 498 KN-----LLILYD-------------------------AIGTLADSVGHHLNKPEYIQML 527
Query: 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135
+P L+ + + L E ++ V S + V ++
Sbjct: 528 MPPLIQKWNMLKDEDKDLFP-LLECLSSVATALQ--SGFLPYCEPVYQRCVNL------- 577
Query: 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195
+ + + D + A + LS + + ++
Sbjct: 578 ---------VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV--- 625
Query: 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGE 2255
A +L + Q + E+R+ + LG+
Sbjct: 626 ------------------------------ARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 2256 LIEVTSEQSLKEFVIPITGPLIRIIG---DRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312
L + + + V P + I+G + V + + I + GI ++P++P
Sbjct: 656 LTK-----ACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP 710
Query: 2313 QLQTTFIKCLQDST--RTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 2364
+ ++ + +T+ + A+ +G+L ++ + + +SL+ + D
Sbjct: 711 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE 770
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+++ + ++ V +V + DD +R IL + D
Sbjct: 771 EKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDD--LRDMFCKILHGFKNQVGD 828
Query: 2425 GQLADLLQEL 2434
+
Sbjct: 829 ENWRRFSDQF 838
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 126 bits (316), Expect = 6e-29
Identities = 92/650 (14%), Positives = 201/650 (30%), Gaps = 73/650 (11%)
Query: 2003 EIVPTLLHALEDDQTSDT-----ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN---- 2053
+ L+ L ++ D + LK + + + L+
Sbjct: 45 DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSP 104
Query: 2054 ---AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA----AETVTLVID 2106
A + +A G + +LP L S + +D + A A E ++D
Sbjct: 105 LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD 164
Query: 2107 EEGVE----SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
+ ++ ++ + L+ + IR + + F + L+ + I L L
Sbjct: 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA 224
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
D + AL ++ + P ++ + ++D++
Sbjct: 225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 284
Query: 2223 ----LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------------- 2262
L LP + L++G L G++ +
Sbjct: 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAA 344
Query: 2263 -----QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
++ ++P PL++ + W VK + + L I + P+LP+L
Sbjct: 345 LDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404
Query: 2318 FIKCLQDSTRTVRSSAALALGKLS------ALSTRVDPLVGDLLSSLQVSDAGIREAILT 2371
I+CL D VRS L + + T + PL+ +LL + S+ ++EA +
Sbjct: 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464
Query: 2372 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431
A + + A + + + +++ + ++ + +I + + +
Sbjct: 465 AFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 2432 QELLNL------ASSPSWAARHGSVLVFATFLRHNPSAIS--MSPLFLSILDRLKSSLKD 2483
Q L+ + ++ S P++ ++ ++ +L
Sbjct: 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ 584
Query: 2484 EKFP-------------LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530
+ L L + +IL + + D
Sbjct: 585 AMLNNAQPDQYEAPDKDFMIVALDLLSG-LAEGLGGNIEQLVARSNILTLMYQCMQDKMP 643
Query: 2531 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
EVR+ + + L + KA + +A F P L L V A
Sbjct: 644 EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWA 693
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 9e-29
Identities = 109/749 (14%), Positives = 225/749 (30%), Gaps = 98/749 (13%)
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK----LGERVLPSIIPILSRGLKDPSASR 1939
+ +++ L S R ++G L V+ V I + D S
Sbjct: 47 NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI 106
Query: 1940 RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-- 1997
R V I ++ + + +L+P + + L E A A + + +
Sbjct: 107 RATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 1998 ------MQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSVRTTAVLPHI---LPKLVH 2046
+ ++ ++P L + + A+ + Q + RT A++ HI + L
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA 222
Query: 2047 LPLS--------AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098
L AL L EV L H+ I+ +L D D +V A EA
Sbjct: 223 LAGDEEPEVRKNVCR--ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV---ALEAC 277
Query: 2099 ETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 2158
E + ++ + ++ L LI K +D
Sbjct: 278 EFWLTLAEQPICKDVLVRHLPK--------------LIPVLVNGMKYSDIDIILLKGDVE 323
Query: 2159 IVLLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
D SD + AL + E+ P + ++++ + E K+ G
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGI 380
Query: 2216 ILI------PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269
+++ + L L+P +Q L A +R L Q ++
Sbjct: 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 440
Query: 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
P+ L++ I D +V+ A S + + + L P+L + T +
Sbjct: 441 KPLMTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKN 499
Query: 2330 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVS--DAGIREAILTALKGVLKHA 2380
A+G L+ + L+ L+ + + +L L V
Sbjct: 500 LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL 559
Query: 2381 GKSVSSAVK----------------IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+ + + D D + A +L +++ +
Sbjct: 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG 619
Query: 2425 G-----QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+++L + R S + + + P + L +
Sbjct: 620 NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV--KPCIADFMPILGT 677
Query: 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH--DDSSEVRRRAL 2537
+L E + +T A+G + + G + +L +V ++ + +
Sbjct: 678 NLNPEFISVCNNATWAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA 734
Query: 2538 SALKSVAKANPSAIMVHVALFGPALAECL 2566
+ + P + + F L
Sbjct: 735 ITIGRLGYVCPQEVAPMLQQFIRPWCTSL 763
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 3e-22
Identities = 108/749 (14%), Positives = 233/749 (31%), Gaps = 76/749 (10%)
Query: 1105 AVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP 1162
P+ ++ + ++ DF + L + R + L + +
Sbjct: 21 ESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80
Query: 1163 DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 1222
+ ++ +I+ L D+ L R + + + + A ++ P ++ L S
Sbjct: 81 QNFPNGVTD----FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCS 135
Query: 1223 RALADTNADVRGRMLNAGIMIID---KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ G + D D + I + +R
Sbjct: 136 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK--IRSH 193
Query: 1280 VVIFTGALAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
V + + + ++ L + V++ V L L++ D
Sbjct: 194 AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ +++ +++ + + A +L + I + + G
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEF------WLTLAEQPICKDVLVRHLPKLIPVLVNG 307
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
+ + G + + +R+ + A + + + +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDD--------TISDWNLRKCSAAALDVLANVYRDELLPH 359
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 1519 GQTALQQ----VGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVD 1570
L + V S + + L+ LL + D N + + L + T
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE--ACTEL 477
Query: 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630
P LA ++ + + + +G + V + YI +L+P + +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 1631 ---------PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE------- 1674
P+ E S A A+ S E + V+ + L N
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597
Query: 1675 ------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
SG A+GL + L V +IL + + + VR L
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-------YATTSLPL 1775
L ++ + + +P + L E SV + A A + Y L
Sbjct: 656 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 715
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804
L+ + + +++ +G L +
Sbjct: 716 LVEIINRPNTPKT--LLENTAITIGRLGY 742
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 96.4 bits (239), Expect = 7e-20
Identities = 39/272 (14%), Positives = 99/272 (36%), Gaps = 10/272 (3%)
Query: 2312 PQLQTTFIKCLQDST---RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368
Q ++ L++S T++ + L +L+ + + +L+ L+ D R
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSL 67
Query: 2369 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA 2428
LK +K ++ + V + S + + +R + ++ ++ E
Sbjct: 68 SGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP 127
Query: 2429 DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEK 2485
DLL +L +L S + G+ + + L ++ + K
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187
Query: 2486 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545
+R + + + ++ + Q+ + + + ++ + D+ EVR+ AL + +
Sbjct: 188 PKIRSHAVACVNQFIISRTQALMLH---IDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244
Query: 2546 ANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
++ H+ + + +D V L A
Sbjct: 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-31
Identities = 121/850 (14%), Positives = 253/850 (29%), Gaps = 169/850 (19%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS- 1683
LV P + + AA+ I ++ + +P+L+ ++D ++ + + L
Sbjct: 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161
Query: 1684 --EVLAALGTVYFEH---ILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQF--QNY 1734
E IL I++ + +VR L + +
Sbjct: 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE 221
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE----DGIFNDNWR 1790
++ + + E+ V+ AA G ++ Y T P + A+ + + N +
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
+ +VE ST I L +
Sbjct: 282 VASMTVEFW-------------------------STICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE---RRQVAGR 1907
S +K+++P L+N L + AG
Sbjct: 317 FALSS-----------------------IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967
L + G +L ++ + + + + R+ + +M K Q ++ + +
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413
Query: 1968 PTIRTALCDSILEVRESAGLAFSTLFKS-----AGMQAIDEIVPTLLHALEDDQ------ 2016
P+I + D L+V+E+ + S Q + +V L L+D
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473
Query: 2017 --TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH--------ALGALAEVAGP 2066
T ++ L + P ++ L+ N AL + E A
Sbjct: 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533
Query: 2067 GLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125
+ +I ++ +G +D L E D + ++ L S +L +
Sbjct: 534 TVAETSASISTFVMDKLGQTMSVDENQLTLE---------DAQSLQELQSNILTVL---A 581
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA-AAWEALSRVVASV 2184
A IR+S + + A ++ LL DS + + A+S + AS+
Sbjct: 582 AVIRKSPSSVEPV------------ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629
Query: 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244
K + L+ P L+ L +
Sbjct: 630 GKGFEK-----------------------------------YLETFSPYLLKALNQVDSP 654
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKG 2303
+ A+G I + E+ + + + L ++I + ++K A+LS I
Sbjct: 655 VS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363
G P+L + + D + +
Sbjct: 714 GADFIPYLNDIMALCVAAQNTKP------------------ENGTLEALDYQIKVLEAVL 755
Query: 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423
I+ L + V + + + V +D + +D +A ++G ++
Sbjct: 756 DAYVGIVAGLHDKPEALFPYVGTIFQF-IAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP 814
Query: 2424 DGQLADLLQE 2433
DG + +
Sbjct: 815 DGSIKQFYGQ 824
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 3e-21
Identities = 110/710 (15%), Positives = 234/710 (32%), Gaps = 92/710 (12%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+ NV+ A+ AL + Q +S+ ++ I + + + R
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAV-RLAALN 203
Query: 1200 ALHSAADVLRTKD-----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
AL + ++ +M + A + +V+ I+ K+ +
Sbjct: 204 ALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKIMSKY----YTF 258
Query: 1255 LFPIFENYLN--KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312
+ P E L A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF- 317
Query: 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 1370
+ S++D P L++ L Q + + A L + G
Sbjct: 318 --------------ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAF 1429
L+ + + + + N + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEP--VLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSS----VQ 1480
+DQ + V+E + ++ Q + V+ + L GL+D + + +
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIIN 479
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PE 1534
L+ +A P + P +V L + + A + ++++
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS-AFSALTTMVEYATDTVAET 538
Query: 1535 IASLVPTLLMGLTDPNDHTKYSLDIL-------LQTTFVNTVDA----------PSLALL 1577
AS+ ++ L + L + LQ+ + + A P +L
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 1578 VPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
+ + R L ++ SA + + + + + + Y+ P + K L V
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1637 SVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTV 1692
A I + + E+ +++ L + + N+ + ++ + +G
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA- 715
Query: 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES 1752
F L DI+ C + P + ++ +Y +VL A+LD
Sbjct: 716 DFIPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYV----G 760
Query: 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
+ L Y T + ED +++V L+GD+
Sbjct: 761 IVAGLHDKPEALFP-YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 1e-18
Identities = 107/890 (12%), Positives = 267/890 (30%), Gaps = 112/890 (12%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQS 1477
+ LL + +R +E + +LS + L E+ +
Sbjct: 5 EFAQLLENSILSPDQNIRLTSE----TQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 1478 SVQLL-----GAMAYCAPQQLSQCLPKIVP--------KLTEVLTDTHPKVQSAGQTALQ 1524
+ L + Q + + ++ P L P++ +A +
Sbjct: 61 AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120
Query: 1525 QVGSV-IKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFVNTVDAPSL-----AL 1576
+ + + + L+ ++ SL L + +L +
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180
Query: 1577 LVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635
L+ IV E S + A + + + + L+ V + EV
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695
++ A + ++ P + L + + A+ + F
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVE----------FW 290
Query: 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755
+ + + +++ A L + + S+ N L +L + D++ +V
Sbjct: 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN-LLNLLTRQNEDPEDDDWNVSM 349
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
+A + ++ L +L VE I DNWR R+++V G ++
Sbjct: 350 SAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM------------ 397
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+G + + L +L + +D SL V++ I +
Sbjct: 398 ------DGPDKVQRTYYVHQAL-----PSILNLM----NDQSLQVKETTAWCIGRIADSV 442
Query: 1876 PKTL--KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIP 1926
+++ ++ +P ++ + L + + LV +L E P+++
Sbjct: 443 AESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501
Query: 1927 ILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
L + M + + + L ++
Sbjct: 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + + + + + + + +D + ++L + +A +
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED----- 616
Query: 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV 2104
F +A+ ALA G G +L T P LL A+ D V A ++
Sbjct: 617 -----DVF--YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 2105 IDEEG---VESLVSELLKGVGDNQA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
++E+ +++++ L + + + A ++ + + G N + ++++ +
Sbjct: 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
+ Y + +A+ + P +
Sbjct: 730 AAQNTKPENGT----------------LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269
+ + Q + + + A +G++ + + S+K+F
Sbjct: 774 PY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 5e-15
Identities = 61/447 (13%), Positives = 141/447 (31%), Gaps = 60/447 (13%)
Query: 2105 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164
+ E + + L + + I ++A LI P ++ ++
Sbjct: 88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI--ELPHGAWPELMKIMVDNTGA 145
Query: 2165 SDSTTVA-AAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223
V A+ AL + S + Q L
Sbjct: 146 EQPENVKRASLLALGYMCESADPQSQA--------------------------------L 173
Query: 2224 PKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
+ +L +QG S S +R A L + + +E ++
Sbjct: 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT 233
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ----LQTTFIKCLQDSTRTVRSSAALAL 2337
+V++A L I+ K +KP++ Q L +K D + + +
Sbjct: 234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS------MTV 287
Query: 2338 GKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 2397
S + + + A ++ L + L V + + +
Sbjct: 288 EFWSTIC--------EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339
Query: 2398 DLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFL 2457
DD +V +SA + L + +Q + L +L+ + ++ +W R +V+ F + +
Sbjct: 340 PED--DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397
Query: 2458 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
P + + L + + + D+ ++E + +GR+ + + +
Sbjct: 398 -DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS-VAESIDPQQHLPGV 455
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVA 2544
+ + + L D +V + ++
Sbjct: 456 VQACLIGL-QDHPKVATNCSWTIINLV 481
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 2e-12
Identities = 91/733 (12%), Positives = 206/733 (28%), Gaps = 94/733 (12%)
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPL 1020
+ IV G + S + + + + + I + +R G + ++Q++ +
Sbjct: 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239
Query: 1021 PRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNA 1080
+ L ++ ++ + + + L + + + + V +
Sbjct: 240 VQAAAFGCLCKIMSKYYTF---MKPYMEQALYALT-------IATMKSPNDKVASMTVEF 289
Query: 1081 VKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALS 1140
I E + S + + S+ + ++ +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED------- 342
Query: 1141 HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
++NV ++A L + I + I W R+ +A
Sbjct: 343 -DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---------DNWRNREAAVMA 392
Query: 1201 LHSAAD----VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DNVSL 1254
S D V RT + + +++ + D + V+ I D D
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-----PKVHAVVDKLLDVL 1309
L + + D K V L + LA+ A+VD L+
Sbjct: 452 LPGVVQA-CLIGLQDHPK---VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507
Query: 1310 NTPS----------EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK-------- 1351
N A+ V + ++ + ++ +L + +
Sbjct: 508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567
Query: 1352 -YGERRGAAFGLAGVVKGFGISSLKKYG--IAATLREGLADRNSAKRREGALLAFECLCE 1408
E + + V SS++ + L ++SA + A L
Sbjct: 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL---VLPSLLK 1465
LG+ FE Y+ P LL A + V A + + L + ++ L +
Sbjct: 628 SLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687
Query: 1466 GLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
+ + R K + + + G +A L I+
Sbjct: 688 MISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQ 747
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
+V + ++ GL D + + + Q + +
Sbjct: 748 IKV-----LEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ-------------FIAQVAED 789
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPI--PEVRSV 1638
T + A ++G++ ++ P I ++ +K+ + +
Sbjct: 790 PQLYSEDATSRAAVGLIGDIAAMF--PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDT 847
Query: 1639 AARAIGSLIRGMG 1651
A A R +
Sbjct: 848 ARWAREQQKRQLS 860
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 59/395 (14%), Positives = 128/395 (32%), Gaps = 59/395 (14%)
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
L L+S + AA + + ++ ++ I ++ G P VK A L
Sbjct: 101 LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKI---MVDNTGAEQPENVKRASLL 157
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQ-----DSTRTVRSSAALALGKLSALSTR--- 2346
L + + + I +Q ++++ VR +A AL
Sbjct: 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217
Query: 2347 ----VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
+ L+ + + Q D ++ A L ++ + ++ +Y++ +
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277
Query: 2403 DDDHVRVSAASIL--------------------GIMSQCMEDGQLADLLQELLNLASSPS 2442
+D V + S + D++ LLNL + +
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337
Query: 2443 -------WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
W + F ++ + I +L+ ++ ++ + + REA+ A
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHI-----LEPVLEFVEQNITADNWRNREAAVMA 392
Query: 2496 LGRLLLHQIQSGPAN---TTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552
G I GP T V L S+++ ++D S +V+ + +A + +I
Sbjct: 393 FG-----SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447
Query: 2553 V--HVALFGPALAECLKDGSTPVRLAAERCAVHAF 2585
H+ A L+D + +
Sbjct: 448 PQQHLPGVVQACLIGLQDHPKVATNCS--WTIINL 480
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 3e-31
Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 14/266 (5%)
Query: 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ + + IR + A L + +++ LI LL D T V A +
Sbjct: 2 SMEEEEFDIREALANGEHL---EKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMV 58
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239
+ + +P +K + + S ++ P+ ++ ++P+
Sbjct: 59 IAKTREDLYEPM-LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYR 117
Query: 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299
G + + + L E+ + + I + ++ + + K L+ + +
Sbjct: 118 IGDEKTKINVSYALEEIAKAN-----PMLMASIVRDFMSMLSSK-NREDKLTALNFIEAM 171
Query: 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359
+ PFLP++ I L D VR+SA AL L+ L+ ++ +V L L
Sbjct: 172 GENSFKYVNPFLPRI----INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELN 227
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVS 2385
+ + + + + + +L G S S
Sbjct: 228 DTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 4e-16
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 46/271 (16%)
Query: 1828 AHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886
A+G + ++L K +E VL L + D +V + A+ + I + ++ L
Sbjct: 15 ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKL 74
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
+ L S + Q +A G++ ++ E V +IP+L + + V
Sbjct: 75 FSLLKK---SEAIPLTQEIAKAFGQMAKEKPELVKS-MIPVLFANYRIGDEKTKINVSYA 130
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L E+ + M ++ + L E + +A + ++ + ++ +P
Sbjct: 131 LEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNPFLP 184
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066
+++ L D VR +A AL LA
Sbjct: 185 RIINLLHDGDE------------IVRASA------------------VEALVHLAT---- 210
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
LN L ++ L + D V KE
Sbjct: 211 -LNDKLRKVVIKRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 7e-16
Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 15/265 (5%)
Query: 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486
++ ++ +REA + A+ + VL L++ L+D W ++++ ++ +A
Sbjct: 1 MSMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60
Query: 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 1546
L K+ L + A Q+ K + S++P L
Sbjct: 61 KTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKSMIPVLFANY 116
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
++ TK ++ L+ + + +A +V L ++ E K A + M
Sbjct: 117 RIGDEKTKINVSYALEE--IAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173
Query: 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666
K + P+ LP + +L D VR+ A A+ L + +V L+ L
Sbjct: 174 -NSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHL--ATLNDKLRKVVIKRLEEL 226
Query: 1667 KSDNSNVERSGAAQGLSEVLAALGT 1691
D S++ +G+S +L G
Sbjct: 227 N-DTSSLVNKTVKEGISRLLLLEGH 250
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 8e-16
Identities = 38/261 (14%), Positives = 85/261 (32%), Gaps = 25/261 (9%)
Query: 2322 LQDSTRTVRSSAALA--LGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379
+++ +R + A L K+ ++ + ++ L+ L + + ++ + + K
Sbjct: 3 MEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT 62
Query: 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 2439
+K + L + + A G M++ + + ++ L
Sbjct: 63 REDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL-VKSMIPVLFANYR 117
Query: 2440 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
+ + NP ++ SI+ S L + + + + +
Sbjct: 118 IGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSKNREDKLTALNFIEAM 171
Query: 2500 LLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFG 2559
G + V L +++ LHD VR A+ AL +A N V +
Sbjct: 172 -------GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI---- 220
Query: 2560 PALAECLKDGSTPVRLAAERC 2580
E L D S+ V +
Sbjct: 221 -KRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-15
Identities = 38/239 (15%), Positives = 94/239 (39%), Gaps = 26/239 (10%)
Query: 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDA-GI 2365
+ L +L I+ L D TV +A + ++ +P++ L S L+ S+A +
Sbjct: 31 ESVLKKL----IELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPL 86
Query: 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG 2425
+ I A + K + V S + + L D+ +++ + L +++
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPV-----LFANYRIGDEKTKINVSYALEEIAKANPML 141
Query: 2426 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 2485
+A ++++ +++ SS + + ++ ++ ++ L R+ + L D
Sbjct: 142 -MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN------PFLPRIINLLHDGD 194
Query: 2486 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544
+R ++ +AL L + ++ + L+D SS V + + +
Sbjct: 195 EIVRASAVEALVHL--------ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 44/262 (16%), Positives = 96/262 (36%), Gaps = 24/262 (9%)
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
++RE A G L ++ E V+ LI ++ D W V +S + +I +
Sbjct: 9 DIREALANGE-HLEKILIMAKYDESVLK---KLIELLDDDL-WTVVKNAISIIMVIAKTR 63
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRT-VRSSAALALGKLSALSTR-VDPLVGDLLSSLQVS 2361
+P L +L L+ S + A A G+++ V ++ L ++ ++
Sbjct: 64 EDLYEPMLKKL----FSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIG 119
Query: 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421
D + + AL+ + K ++S V+ ++ + +++A + + M +
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIVRD-----FMSMLSSKNREDKLTALNFIEAMGEN 174
Query: 2422 MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
+ L ++NL R +V N ++ + L
Sbjct: 175 SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK-------VVIKRLEEL 226
Query: 2482 KDEKFPLREASTKALGRLLLHQ 2503
D + + + + RLLL +
Sbjct: 227 NDTSSLVNKTVKEGISRLLLLE 248
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)
Query: 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793
Y + VL +++ L D+ +V A+ V+ + P+L ++ + Q
Sbjct: 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR------DKRNEVLA 1847
+ G + K K+++ + E + L ++
Sbjct: 89 EIAKAFG-QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907
+ S + + AL+ + + N+ K + +P ++N L R A
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL----LHDGDEIVRASAVE 203
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1957
AL L L +++ +I L L D S+ + V G+S ++ G S
Sbjct: 204 ALVHLA-TLNDKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLLLEGHS 251
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 1e-10
Identities = 41/292 (14%), Positives = 102/292 (34%), Gaps = 53/292 (18%)
Query: 1745 GLADENESVRDAALGAGH----VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+ +E +R+A H +++ Y + L L+ ++D D W + ++++ ++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDD----DLWTVVKNAISIIM 57
Query: 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1860
+ + E +++ L +++ ++ +
Sbjct: 58 VI--------------------AKTREDLYEPMLKKL-----------FSLLKKSEAIPL 86
Query: 1861 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920
Q + + P+ +K ++PVL + + + AL E+ + +
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPVLFA----NYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
I+ L + + + + ++ K +++ +P I L D
Sbjct: 143 AS-IVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEI 196
Query: 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED--DQTSDTALDGLKQILS 2030
VR SA A L + + ++V L L D + T +G+ ++L
Sbjct: 197 VRASAVEALVHL--ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 16/240 (6%)
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILS 2030
++ + ++RE+ + + ++ L+ L+DD + A+ + I
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---PGLNFHLGTILPALLSAMGDDD 2087
R P +L KL L + +A+ G + +++P L + D
Sbjct: 62 TREDLYEP-MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120
Query: 2088 MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147
+ A E + + + S+V + + + + ++ I +NS Y+
Sbjct: 121 EKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYV 179
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207
P +I LL D D A+A EAL + K KV+ + D
Sbjct: 180 NPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTS 230
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 18/236 (7%)
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
++ + L + K A I+ + T P + L +KK +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKK---SEAIPLT 87
Query: 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696
A+A G + + E ++ L + + + + L E+ A +
Sbjct: 88 QEIAKAFGQMAKEKPEL-VKSMIPVLFANYRIGDEKT-KINVSYALEEI-AKANPMLMAS 144
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
I+ D + S + + L ++G Y+ LP I++ L D +E VR +
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI----EAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 1757 ALGA-GHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810
A+ A H+ + + L + D + + ++ E + LL +S
Sbjct: 201 AVEALVHLATLNDKLRKVVIKRLEELND----TSSLVNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 23/239 (9%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
L + L + V A + D + L LFSL + + +
Sbjct: 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS-----EAIPL----T 87
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
Q IA A A +I + + + A +++ + N L
Sbjct: 88 QEIAKAFGQMAKEKPELVKSMIPVLFA--NYRIGDEKTKINVSYA----LEEIAKANPML 141
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ I ++++ +S + + + F A+ ++ K V+ + +++++L+ E
Sbjct: 142 MASIVRDFMSMLSSKNRE---DKLTALNFIEAMGENSFKY---VNPFLPRIINLLHDGDE 195
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373
V+ + L L D+ +V + L++L + + G++ ++ G SS
Sbjct: 196 IVRASAVEALVHLATL-NDKLRKVVIKRLEELNDTSSL-VNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 29/276 (10%)
Query: 1224 ALADTNADVRGRMLNA----GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ + D+R + N I+I+ K+ + L + + D+ V +
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLD--------DDLWT--VVKN 51
Query: 1280 VVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ +AK ++ KL +L + + + ++ + + + ++
Sbjct: 52 AISIIMVIAKTREDL---YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSM 108
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ L D+ + ++ L + K + I L+ +N +
Sbjct: 109 IPVLFANYRIGDEK-TKINVSYALEEIAKANPMLMAS---IVRDFMSMLSSKNREDKLTA 164
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
E +G YV LP ++ D VR +A A ++ L+ + K+
Sbjct: 165 LNF-----IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA-VEALVHLATLNDKLRKV 218
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
V+ L+ L D + ++ + + + S
Sbjct: 219 VIK-RLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 94.1 bits (233), Expect = 5e-19
Identities = 107/661 (16%), Positives = 194/661 (29%), Gaps = 197/661 (29%)
Query: 1244 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 1303
+D + +FE+ ++ D+ + I + H+ V
Sbjct: 14 HQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGT-L 65
Query: 1304 KLLDVL-NTPSEAVQRAVSSCLSP----LMQSMQDE--APTLVSRL----LDQLMKS--- 1349
+L L + E VQ+ V L LM ++ E P++++R+ D+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1350 ---------DKYGERRGAAFGL---AGVV----KGFGISSLKKYGIAATLREGLADRNSA 1393
Y + R A L V+ G G + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLS-------- 173
Query: 1394 KRREGALLAFEC----LCEKLGRLFEP-YVIQMLPLLLVAF-------SDQVVAVR---E 1438
+ L L P V++ML LL SD ++
Sbjct: 174 ---YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498
+ + R ++ + LVL + + A C
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL--------LNVQ-----NAKAWNAFNL-------SC-- 266
Query: 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA--SLVPTLLMGLTDPNDHTKYS 1556
KI+ LT T +QV + SL M LT
Sbjct: 267 KIL------LT-----------TRFKQVTDFLSAATTTHISLDH-HSMTLTPDE-----V 303
Query: 1557 LDILLQTTFVNTVDAPSLA-----LLVPIVHRGLRERSA-------ETKKKAAQIVGNMC 1604
+LL+ D P + I+ +R+ A K I+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESS 362
Query: 1605 SLVTEPKDMIP-YIGL-LLPE-VK---KVLV----DPIP-EVRSVAARAIG-SLIRGMGE 1652
V EP + + L + P +L D I +V V + SL+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1653 EN---FPDLVSWLLD-ALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--C 1705
E+ P + L+ +K +N + RS + + T + ++P +
Sbjct: 423 ESTISIPSI---YLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1706 S----HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQQVL----------PAILDGLAD- 1748
S H + +TLF+ + F ++ L+Q + +IL+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1749 --------ENESVRDAALGA--------GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792
+N+ + + A L+ T L + L A ++ IF + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 1793 Q 1793
Q
Sbjct: 588 Q 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 1e-16
Identities = 110/721 (15%), Positives = 205/721 (28%), Gaps = 240/721 (33%)
Query: 723 MSITPKDTYVAF-EKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
KD F + + + DC D+Q P+ +LS E+ I I+ +K+
Sbjct: 14 HQYQYKDILSVFEDAFVDNF-DCK--------DVQDM--PKSILSKEE---IDHIIMSKD 59
Query: 782 TKQSKGR-FRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD---IGKSTKKADKGKTA 837
R F + + E + V + + + K + +
Sbjct: 60 AVSGTLRLFWTLLSK------------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 838 K----EEARELLLNEEASIREKVQGVQRNLSLML---SALGEMAIANPVFAHSQL----P 886
E R+ L N+ K V R L L AL E+ A V L
Sbjct: 108 MTRMYIEQRDRLYNDNQVFA-KYN-VSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 887 SLVKFV--DPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSD 944
+ V +Q + + + + L C + L++ L + SD
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSD 218
Query: 945 L---IPSVGEAAKNKESL---------CLF-------ERIVNGLTVSCKSGPLPVDSFTF 985
I + + + CL + N +SCK
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----------- 267
Query: 986 VFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGS 1045
ILL+ + + D + H+
Sbjct: 268 -------ILLTTRFKQVTDFLSAATTTHI------------------------------- 289
Query: 1046 ALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA 1105
+L+ + L P+EV S L + L+ + LP + + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLL-----------LKYLD-------CRPQDLPREVLTTNPRRLS 331
Query: 1106 VHDPEKSVAEAAED---IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAE--ALATALDE 1160
+ +AE+ D WD + + + L + S NV L AE + L
Sbjct: 332 I------IAESIRDGLATWDNWKH---VNCDKLTTIIESS-LNV-LEPAEYRKMFDRLSV 380
Query: 1161 YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL 1220
+P S L + W + D+ V++ L
Sbjct: 381 FPPSAHIPTILLSLI---------------WFD--------------VIKSDVMVVVNKL 411
Query: 1221 ISRALADTNA------------DVRGRMLNAGIM---IIDKH----GRDNVSLLFPIFEN 1261
+L + +++ ++ N + I+D + D+ L+ P +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1262 Y--------LNKKASDEEKYDLVR---------EGVVIFTGALA---------------- 1288
Y L K E+ L R E +
Sbjct: 472 YFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1289 -KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM 1347
++ +DPK +V+ +LD L E + + + L L ++ E + Q+
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIFEEAHKQVQ 588
Query: 1348 K 1348
+
Sbjct: 589 R 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-13
Identities = 92/610 (15%), Positives = 183/610 (30%), Gaps = 154/610 (25%)
Query: 143 HIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKS 202
HI+M + + F+ L S+ ++ + + +E+ + SP ++ +
Sbjct: 53 HIIMSKD-AVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQ 104
Query: 203 PSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKR 262
PS+ + +Y++ + ++ F ++SR + L ++ L+
Sbjct: 105 PSMMTR-------MYIEQR-----DRLYNDNQVFAKY--NVSRLQ-PYLKLRQALLELRP 149
Query: 263 NPEIILES---IGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKS 319
++++ G K+ + L V LS K L + +
Sbjct: 150 AKNVLIDGVLGSG---KTW---V------ALDVCLSYKVQCKMDFKIFWLNL-KNCNSPE 196
Query: 320 SNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK-YLNSL------- 371
+ + L+ + Y I + RI + EL + K Y N L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQ 254
Query: 372 -SLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDL-----LSFFASGLKEK 425
+ F LSC K IL + + K+ D + + L + L
Sbjct: 255 NAKAWNAFNLSC---------K--IL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 426 EALRRGHLRCLRVICTNTDA------VLQVSSLLGPL-IQLVKTGFTKAVQRLDGIYAFL 478
E L + + VL + P + ++ + D + +
Sbjct: 302 EVKS------LLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDN-WKHV 350
Query: 479 IVGKIAAADIKA-----EETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVV 533
K+ I++ E ++ L + +PT ++S + D + V ++V
Sbjct: 351 NCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 534 LLVEHS----HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITS--------- 580
L ++S T S + + L + H R I+
Sbjct: 410 KLHKYSLVEKQPKESTIS---IPSIYLELKVKL--ENEYALH---RSIVDHYNIPKTFDS 461
Query: 581 ---VP-------------HLSEALLLE----FSN-FLSL--VGEKIIISKT------SDT 611
+P HL E F FL + +KI T S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 612 DDFVDSQV--PFL----PSVEVQVKTL---LVIASVALARGPSAS-ARVIFCSHHPSIVG 661
+ + P++ P E V + L L R+ + +I
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 662 TGKRDAVWQR 671
+ QR
Sbjct: 582 EAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 8e-11
Identities = 67/413 (16%), Positives = 130/413 (31%), Gaps = 104/413 (25%)
Query: 2244 ELREQAALGLGELIEVTSEQSLKEF----VIPITGPLIR------IIGDRFPWQVKSAIL 2293
E E +++ V + + F V + ++ II + S L
Sbjct: 10 ETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK---DAVSGTL 65
Query: 2294 STLSIIIRKGGIALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVG 2352
++ K ++ F+ + L+ + K L +T + ++ + D L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSM---MTRMYIEQRDRLYN 121
Query: 2353 D--LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY-------SVLKDLVYHD 2403
D + + VS R L+ L + A + + + + V
Sbjct: 122 DNQVFAKYNVS----RLQPYLKLRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 2404 DDHVRVSAASILGI-MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
I + + C + ++LQ+LL P+W +R + S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRS-----------DHSS 221
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
I + SI L+ LK + + L L+L +Q+ A
Sbjct: 222 NIKLR--IHSIQAELRRLLKSKPYE------NCL--LVLLNVQN------------AKAW 259
Query: 2523 SALHDDSSEVRRRAL--SALKSVAKANPSAIMVHVAL------FGPA-----LAECLKDG 2569
+A + + L + K V +A H++L P L + L
Sbjct: 260 NAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--D 312
Query: 2570 STPVRLAAERCAVHAFQLTRGIIYSRSTKI-------YNRLGCE---TVIKIS 2612
P L E + +L II + S + + + C+ T+I+ S
Sbjct: 313 CRPQDLPREVLTTNPRRL--SII-AESIRDGLATWDNWKHVNCDKLTTIIESS 362
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 75/652 (11%), Positives = 176/652 (26%), Gaps = 172/652 (26%)
Query: 1964 DELIPTIRTALCDSILEV--RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD------ 2015
D + D I+ S L S + + + V L +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMS 96
Query: 2016 ----QTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LSAFNAHAL-GALAEV-AGPGL 2068
+ ++ I + K ++ L + L AL E+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPY--LKLRQALLELRPAKNV 153
Query: 2069 NFH--LG---TILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVS 2115
LG T + + + +L + L E ++ L+
Sbjct: 154 LIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLY 207
Query: 2116 EL---LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD-SDSTTVA 2171
++ D+ ++I+ + + L+ P L+ L + ++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLV--LLNVQNAKA-- 258
Query: 2172 AAWEAL---SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228
W A +++ + + +V D +S + +
Sbjct: 259 --WNAFNLSCKIL------LTTRFKQVT-DFLSAATTTHISLDH----HSMTLTPDEVKS 305
Query: 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP--- 2285
+ L+ L +L + + + +E S+++ L D +
Sbjct: 306 ----LLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDG-------LATW--DNWKHVN 351
Query: 2286 -WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC------------------LQDST 2326
++ + I S+L+ L+P + + F +
Sbjct: 352 CDKLTTIIESSLN--------VLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 2327 RTVRSSAALALGKLSALSTRVDPL---VGDLLSSLQVS---DAGIREAILTALKGVLKHA 2380
V L K S + + + + L+V + + +I+
Sbjct: 402 SDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 2381 GKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL-LNLAS 2439
+ + Y + +H + E + L + + L+
Sbjct: 461 SDDL-IPPYLDQY-FYSHIGHH---------------LKNI-EHPERMTLFRMVFLDF-- 500
Query: 2440 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF-----PLREASTK 2494
+ + +RH+ +A + S L+ L +LK + + P E
Sbjct: 501 --RFLEQK---------IRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYERLVN 546
Query: 2495 ALGRLLLHQIQSGPANTTVVVDILASVV-SALHDDSSEVRRRALSALKSVAK 2545
A+ L ++ ++ AL + + A K V +
Sbjct: 547 AILDFLPK------IEENLICSKYTDLLRIALMAEDEAI---FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-10
Identities = 119/771 (15%), Positives = 215/771 (27%), Gaps = 254/771 (32%)
Query: 1650 MGEEN--FPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
GE + D++S DA + +V+ +L+ +HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-----PKSILS---KEEIDHII------- 55
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL----PAILDGLADENESVRDAALGAG 1761
G L LF L Q ++++VL ++ + E R ++
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSM--- 107
Query: 1762 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV---ELLGDLLFKVAGTSGKALLEGG 1818
+ Y D ++NDN + +V + L +ALLE
Sbjct: 108 --MTRMYIEQ---------RDRLYNDNQVFAKYNVSRLQPYLKLR--------QALLE-- 146
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV-WKTI-VANTP 1876
+ G VLG K +A V + + + W + N+P
Sbjct: 147 -LRPAKNVLIDG-----VLGSGK--TWVAL--DVCLSYKV-QCKMDFKIFWLNLKNCNSP 195
Query: 1877 KTLKEIMPVLMNTL---ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933
+T+ E++ L+ + +S + SS + EL R L + L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCL- 247
Query: 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTL 1992
+ L V ++ AF+
Sbjct: 248 -----------LVLLNV------------------------QNAKAWN-------AFN-- 263
Query: 1993 FKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052
LL T KQ+ + A HI L H ++
Sbjct: 264 LSC----------KILL------TTRF------KQVTDFLSAATTTHI--SLDHHSMTLT 299
Query: 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES 2112
L + Q L +E T + S
Sbjct: 300 PDEVKSLLLKYLD----------------------CRPQDLPREVLTTNPRRL------S 331
Query: 2113 LVSELLKG-----------VGDNQASIRRSS-AYLIGYFYKNSKLY-----LVDEAPNMI 2155
+++E ++ D +I SS L Y+ K++ A
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPT 389
Query: 2156 STLIVLLSDSDSTTVAAAWEALSR--VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 2213
L ++ D + V L + +V PKE I I + + E +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR- 447
Query: 2214 GPILIPGFCLPKALQP--LLPIFLQGLISGSAELREQAALGLG-ELIEVTSEQSLKEFVI 2270
++ + +PK L+P +L +G L + + + F
Sbjct: 448 --SIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHIGHHLKNIEHPERMTLF-- 493
Query: 2271 PITGPLI---------RIIGDRFPWQVKSAILSTLS-IIIRKGGI------------ALK 2308
++ +I D W +IL+TL + K I A+
Sbjct: 494 ----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359
FLP+++ I T +R AL + + + +Q
Sbjct: 550 DFLPKIEENLICS--KYTDLLR----------IALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 2e-10
Identities = 96/677 (14%), Positives = 178/677 (26%), Gaps = 245/677 (36%)
Query: 32 DVTSLIRNTEMSPEIASFL--------VDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTF 83
DV + ++ EI + +F T + +K V++V+ F
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---F 93
Query: 84 MKT-FAAALVQAMEKQSKFQS---------------HVGCYRL-----LKWSCLL-LSKS 121
+ + Q + +V RL L+ LL L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR-QALLELRPA 150
Query: 122 QFATV------SKNALCRVAAAQASLLHIVMQR--------SFRERRACK------QTFF 161
+ + K + A L + V + + + + + Q
Sbjct: 151 KNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 162 HL----FSQSPDIYKTY---TDELKDA--RI----PYKHSPELICLLLEFLS--KSPSLF 206
+ ++ D ++ R+ PY++ CLL+ L ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLV--LLNVQNAKAW 259
Query: 207 E----KCRPIFL--DIYVKAVLNAK-------EKPMKGL----SESFLPLFTHMSREDFQ 249
C+ + V L+A + L +S L + +D
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-- 317
Query: 250 SIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGAL 309
LP +L NP L I ++ L +H + + T
Sbjct: 318 ---LPRE--VLTTNP-RRLSIIAESIRD-GLATWDN-----------WKHVNCDKLT--- 356
Query: 310 TIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLN 369
TII S P MF + +V FP ++
Sbjct: 357 TIIE-SSLNVLEPAEYRKMFDRL-SV---------FP-----------PSAHIPTI---- 390
Query: 370 SLSLTICKFLLSCYKDEGNEEV---KLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
+ L+ + + V KL S V K S I + L+ +
Sbjct: 391 ----LLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEY 443
Query: 427 ALRR---GHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDG-IYAFLIVGK 482
AL R H + ++ L P LD Y+ + G
Sbjct: 444 ALHRSIVDHYNIPKTFDSDD---------LIPP-------------YLDQYFYSHI--GH 479
Query: 483 -IAAADIKAEETVTKEKL-----WSLVSQNEPSLVPTAMISKLSVDD--CMACVELLVVL 534
+ + E + + + K+ D A +L L
Sbjct: 480 HLKNIE-HPERMTLFRMVFLDFRF--------------LEQKIRHDSTAWNASGSILNTL 524
Query: 535 LVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIIT-SVPHLSEALLLEFS 593
++ + I + P E L+
Sbjct: 525 Q-----------------------------QLKFY-----KPYICDNDPKY-ERLVNAIL 549
Query: 594 NFLSLVGEKIIISKTSD 610
+FL + E +I SK +D
Sbjct: 550 DFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-10
Identities = 84/528 (15%), Positives = 160/528 (30%), Gaps = 156/528 (29%)
Query: 1011 YKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKD 1070
+ HMD Y ++ ++ A + C +V + +K+
Sbjct: 4 HHHMD-------FETGEHQYQYKDILSVFEDAFVDNFD--C-----KDVQDMPKSILSKE 49
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-WIAVHDPEKSVAEAAEDIWDRYGYDF- 1128
+ I + + + L W + E+ V + E++ R Y F
Sbjct: 50 E---------IDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 1129 --------------GTDYSGLFKALSHSN-----YNV-RLAAAEALATALDEYPDSIQGS 1168
Y L + N YNV RL L AL E +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKN- 152
Query: 1169 LSTLFSLYIRDIGLGGDNVDAG--WLGRQGIALALHSAADVLRTKDLPVIMTFLI---SR 1223
+ G+ G +G W+ A DV + + M F I +
Sbjct: 153 ----VLID----GVLG----SGKTWV-----------ALDVCLSYKVQCKMDFKIFWLNL 189
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
++ V ML + ID + I L + E L++ +
Sbjct: 190 KNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKP--Y 243
Query: 1284 TGALAKHLAKDD---PKVHAVVD---KLLDVLNTPSEAVQRAVSS------CLSPLMQSM 1331
L L + K + K+L L T + V +S+ L ++
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 1332 -QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390
DE +L+ + LD + L V + + IA ++R+GLA
Sbjct: 299 TPDEVKSLLLKYLD--CRPQD----------LPREVL--TTNPRRLSIIAESIRDGLATW 344
Query: 1391 NSAKRREGALLAFECLCEKLGRLFE-------PYVIQMLPLLLVAFSD------QVVAV- 1436
++ K C+KL + E P + + L F ++++
Sbjct: 345 DNWKHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 1437 -REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1483
+ + ++++L SL++ + K+S++ +
Sbjct: 396 WFDVIKSDVMVVVNKLHKY-------SLVEK------QPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 3e-07
Identities = 80/552 (14%), Positives = 173/552 (31%), Gaps = 165/552 (29%)
Query: 1371 ISSLKKYGIAATLREGLADR------NSAKRREGALLAFECLCEKLGRLFEPYVIQML-- 1422
+ + + + L+ S G L F L K + + +V ++L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1423 --PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
L+ E +MM+++ + D+ + Q
Sbjct: 90 NYKFLMSPI---------KTEQRQPSMMTRMYIEQR------------DRLYN----DNQ 124
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKV-----QSAGQTALQQVGSVIKNP 1533
+ A +S+ + KL + L V +G+T + V +
Sbjct: 125 VF------AKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSY 174
Query: 1534 EIASLVPT----LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589
++ + L + N ++ ++ +LQ +D + + LR S
Sbjct: 175 KVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS 229
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ + + L+ PY LL VL + ++ A + I
Sbjct: 230 IQAELR---------RLLKSK----PYENCLL-----VL-LNVQNAKAWNAFNLSCKI-- 268
Query: 1650 MGEENFPDLV----SWLLDALKSDN-SNVERSGAAQGLSE-----VLA-ALGTVYFEHIL 1698
L+ + D L + +++ + L+ +L L + L
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--L 318
Query: 1699 PDIIRNCSHQR-----ASVRDGYLTL--FKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
P + + +R S+RDG T +K++ + L ++ + L+ L + E
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVL-EPAE 370
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL-GDLLFKVAGTS 1810
R + + L +F + I + L+ D++
Sbjct: 371 -YR-----------KMF--DRL---------SVFPPSAHIPTILLSLIWFDVIK------ 401
Query: 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWK 1869
SD + H +++E + E ++ + ++ + + + ALH +
Sbjct: 402 --------SDVMVVVNKLHKYSLVE---KQ-PKESTISIPSIYLELKVKLENEYALH--R 447
Query: 1870 TIVA--NTPKTL 1879
+IV N PKT
Sbjct: 448 SIVDHYNIPKTF 459
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 91.8 bits (227), Expect = 2e-18
Identities = 112/807 (13%), Positives = 243/807 (30%), Gaps = 142/807 (17%)
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVL 1686
V P A + + EN P + L L + ++ R
Sbjct: 10 TVSPDRLELEAAQKFLERAA----VENLPTFLVELSRVLANPGNSQVARV---------A 56
Query: 1687 AALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
A L I+N + + ++ Y + + N ++V +L
Sbjct: 57 AGL-----------QIKNSLTSKDPDIKAQYQQRWLAID-------ANARREVKNYVLHT 98
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQSSVELLGDLL 1803
L E A+ + P L+P + + N N +++S++E +G +
Sbjct: 99 LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158
Query: 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1863
D + + I+ + M + + S +V+ A
Sbjct: 159 ---------------QDIDPEQLQDKSNEILTAI----------IQGMRKEEPSNNVKLA 193
Query: 1864 ALHVWKTIVANTPKTLK--EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
A + + T +M + + + R A + L +++ + +
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
+ P L + S V + E ++ ++ +L A
Sbjct: 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-----DLAIEASEAAEQGRPPE 308
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---------TALDGLKQILSVR 2032
S A A+ +VP L L +D A L + +
Sbjct: 309 HTSKFYA---------KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359
Query: 2033 TTAVLPHILPKLVHLPLSAFNAH------ALGALAEVAGPG-LNFHLGTILPALLSAMGD 2085
++PH+LP + + + A G + E P L + +P L+ M D
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 2086 DDMDVQS-----LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-------------AS 2127
+ V+ + + I++ + L+ L++G+ A
Sbjct: 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE 479
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASV 2184
+A + + + L ++ L+ D + ++A+E+L +V +
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539
Query: 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244
K+ P+ K +++ L + LQ I +
Sbjct: 540 AKDCYPAVQKTT------------------LVIME--RLQQVLQMESHIQSTSDRIQFND 579
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKG 2303
L+ L ++ Q + + L+R+ V+ L +S ++
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRT-VRSSAALALGKLS-ALSTRVDPLVGDLLSSL--- 2358
G ++ + L++ V +A +G L AL + + P +++ L
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN 699
Query: 2359 ---QVSDAGIREAILTALKGVLKHAGK 2382
+ ++ IL+ + G
Sbjct: 700 LGNENVHRSVKPQILSVFGDIALAIGG 726
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 1e-15
Identities = 118/860 (13%), Positives = 242/860 (28%), Gaps = 120/860 (13%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L EAA+ + + + + + L L + L + + ++ +
Sbjct: 6 ILEKTVSPDRLELEAAQ----KFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 1483 ------------GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ ++ + L + SA Q + I
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI 121
Query: 1531 KNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRGL 1585
+ L+P L+ +T+PN H K S + ++ + +G+
Sbjct: 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181
Query: 1586 R--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
R E S K A + N D ++ V + P VR A + +
Sbjct: 182 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
++ + + L + A QG+ D+
Sbjct: 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN------VCDEEMDLAI 295
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
S R T Y +L L Q L + D++ + AA +
Sbjct: 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE------- 1816
L +P +LP +++ I N +WR R ++V G +L + K L+
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 1817 GGSDDE-----GASTEAHGR---AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868
D + GR + E D L + V +
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474
Query: 1869 KTIVANT--------------PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
++ L +++ L+ + + + A L+
Sbjct: 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534
Query: 1915 KLG----------ERVLPSIIP-----------ILSRGLKDPSASRRQGVCIGLSEVMAS 1953
+ ++ I+ I S + + +C L V+
Sbjct: 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSI--LEVRESAGLAFSTLFKSAG---MQAIDEIVPTL 2008
L D ++ ++ + V+E A +A STL + G ++ ++ P L
Sbjct: 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL 654
Query: 2009 LHALEDDQTSDT-----ALDG---------LKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054
L++ L G + +L ++ + VH +
Sbjct: 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQIL 714
Query: 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV 2114
G +A G +L +L L A + + E
Sbjct: 715 SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RESCLEAY 769
Query: 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST--TVAA 2172
+ +++G+ +Q ++ + ++S + + D D T VA
Sbjct: 770 TGIVQGLKGDQENVHPDVMLVQPR------------VEFILSFIDHIAGDEDHTDGVVAC 817
Query: 2173 AWEALSRVVASVPKEVQPSY 2192
A + + + K+V
Sbjct: 818 AAGLIGDLCTAFGKDVLKLV 837
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 7e-15
Identities = 103/774 (13%), Positives = 232/774 (29%), Gaps = 107/774 (13%)
Query: 1391 NSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDTH--------------------PKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW- 380
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ AA + EP + P + +P + +++ DP VR AA +G + +
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS 1706
E L+ L++ L V + +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLS-AEPRVASNVCW-----------------AFSSLAEAAY 482
Query: 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766
D L + Q L D ++R +A + +V+
Sbjct: 483 EAADVADDQEEPATYCL-----SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826
+ A P + + E L +L + + +D +
Sbjct: 538 NSAKDCYPAVQKTTLVIM------------ERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 1827 EAHGRAIIEVLGRDKR---NEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKE 1881
+ +V +D + V+A+L + S V++ AL T+V +
Sbjct: 586 ATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645
Query: 1882 IMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSA 1937
M L L + + A +G+L R L ++P ++ +L L + +
Sbjct: 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV 705
Query: 1938 SR--RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + + + +A A + +++ ++ T++ A + + + L
Sbjct: 706 HRSVKPQILSVFGD-IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL--- 761
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH 2055
++ E ++ L+ DQ + L Q +L I +
Sbjct: 762 --RESCLEAYTGIVQGLKGDQENVHPDVMLVQPR---VEFILSFIDHIAGDEDHTDGVVA 816
Query: 2056 A----LGALAEVAGPGL--NFHLGTILPALLS-AMGDDDMDVQSLAKEAAETVT 2102
+G L G + ++ LL+ ++LA+ A + +
Sbjct: 817 CAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELR 870
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 1e-14
Identities = 116/863 (13%), Positives = 272/863 (31%), Gaps = 159/863 (18%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-- 1265
++LP + L R LA+ R+ AG+ I +++++ P + +
Sbjct: 28 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGLQI-----KNSLTSKDPDIKAQYQQRW 80
Query: 1266 KASDEEKYDLVREGVV-----------IFTGALAKHLAKDDPKVH--AVVDKLLDVLNTP 1312
A D V+ V+ + +A + P ++ +L+ + P
Sbjct: 81 LAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140
Query: 1313 S--EAVQRAVSSCLSPLMQS-----MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGV 1365
+ E ++ + + + Q +QD++ +++ ++ + K + + AA
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200
Query: 1366 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECL---CEKLGRLFEPYVIQML 1422
F ++ K + + + + + A + L + E Y+ L
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260
Query: 1423 PLLLVAF--SDQVVAVREAAEC------AARAMMSQLSAQGVKLVLPSLLKGL------- 1467
+ + SD + E + + S + P
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320
Query: 1468 -----------------EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510
+D W +++ L +A C +P ++P + E + +
Sbjct: 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKN 377
Query: 1511 THPKVQSAGQTALQQVGSVIK----NPEIASLVPTLLMGLTDPNDHTKYS----LDILLQ 1562
+ + A A + + P + +PTL+ + DP+ + + + + +
Sbjct: 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD---------- 1612
++ LA L+ + GL ++ E D
Sbjct: 438 LLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496
Query: 1613 --MIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEENFP----------- 1656
+ L++ ++ + P +RS A ++ +++ ++ +P
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1657 ------DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR------N 1704
+ S + N +S L VL + I ++
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALG---- 1759
+ V++ L L LG +F Y++ P + GL + V AA+G
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1760 ---AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
A + + + LLL + + + + ++ + + GD+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHRS--VKPQILSVFGDIALAI---------- 724
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV---- 1872
G + + ++ L + + +V + Y + D +R++ L + IV
Sbjct: 725 ------GGEFKKYLEVVLNTLQQASQAQVDKSDYDMV-DYLNELRESCLEAYTGIVQGLK 777
Query: 1873 ---ANTPKTLKEIMPVLMN-----TLISSLASSSSERRQVAGRALGELVRKLGERVL--- 1921
N + + P + I+ + A +G+L G+ VL
Sbjct: 778 GDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837
Query: 1922 ---PSIIPILSRGLKDPSASRRQ 1941
P I +L+ G + + +
Sbjct: 838 EARPMIHELLTEGRRSKTNKAKT 860
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 9e-14
Identities = 97/704 (13%), Positives = 199/704 (28%), Gaps = 136/704 (19%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
+ +A + VR+AA + L + Y ++
Sbjct: 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYME---------------------------- 253
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
+ + + A+ +V +
Sbjct: 254 ----------------TYMGPALFAITIEAMKSDIDEVA---------------LQGIEF 282
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ + ++ E + R L P + + K + +
Sbjct: 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374
+A CL L +D+ V + + +K+ + R A +++G S L
Sbjct: 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402
Query: 1375 KKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--EPYVIQMLPLLLVAFS 1430
K TL E + D + R+ A +CE L + Y+ +L L+
Sbjct: 403 KPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL- 460
Query: 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
V C A SL + + + + A
Sbjct: 461 SAEPRVASNV-CWA---------------FSSLAEAAYE--------AADVADDQEEPAT 496
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PEIASLVPTLL- 1543
LS IV KL E + +A + + ++KN P + ++
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1544 -MGLTDPNDHTKYSLD-----ILLQTTFVNTVDAPSLALLVPIVHR-------------G 1584
+ + S LQ+ T+ + +
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAI 1643
S ++ A V + ++ + + Y+ P + L + +V A +
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV 674
Query: 1644 GSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYFEHILP 1699
G L R + +++ LL+ L ++N + + ++ A+G F+ L
Sbjct: 675 GDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFKKYLE 733
Query: 1700 DIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
++ +A V + YL + + + I+ GL + E+V +
Sbjct: 734 VVLNTLQQASQAQVDKSDYDMVDYL-----NELRESCLEAYTGIVQGLKGDQENVHPDVM 788
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LV+ L + D D + + L+GDL
Sbjct: 789 -----LVQPRVEFILSFIDHIAGDEDHTDG--VVACAAGLIGDL 825
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 6e-12
Identities = 80/555 (14%), Positives = 166/555 (29%), Gaps = 75/555 (13%)
Query: 1144 YNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203
+N AA L D I + +I++ W R +A
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---------PDWRYRDAAVMAFGC 392
Query: 1204 AADVLRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVS-----LL 1255
+ L ++ + + D + VR I + ++ L
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 1256 FPIFENYLNKKASDEEK--------YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
L+ + + E + +V KLL+
Sbjct: 453 LQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPT---LVSRLLDQLMK----------SDKYGE 1354
+ P SS LM+ +++ A V + +M+ +
Sbjct: 513 TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572
Query: 1355 RRGAAFGLAGVVKGFGISSLKKYG-----------IAATLREGLADRNSAKRREGALLAF 1403
R L ++ + L+K +A+ LR + S +E AL+A
Sbjct: 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQV-VAVREAAECA----ARAMMSQLSAQGVKL 1458
L E LG F Y+ P L + + V AA RA+ S +
Sbjct: 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDE 691
Query: 1459 VLPSLLKGLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
V+ LL+ L ++ K + + G +A + + L ++ L + K
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751
Query: 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576
L ++ ++ GL ++ + ++ L+
Sbjct: 752 YDMVDYLNELRE-----SCLEAYTGIVQGLKGDQENVHPDVMLVQP------RVEFILSF 800
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPIP 1633
+ I + + AA ++G++C+ KD++ + ++ + +
Sbjct: 801 IDHIAGD--EDHTDGVVACAAGLIGDLCTAF--GKDVLKLVEARPMIHELLTEGRRSKTN 856
Query: 1634 EVRSVAARAIGSLIR 1648
+ +++A A L +
Sbjct: 857 KAKTLARWATKELRK 871
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 104/733 (14%), Positives = 231/733 (31%), Gaps = 111/733 (15%)
Query: 1889 TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGL- 1947
T++ S + A + L + L + +L+ A R + +
Sbjct: 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--RVAAGLQIK 62
Query: 1948 ------SEVMASAGKSQLLSFMDELIPTIRT----ALCDSILEVRESAGLAFSTLFKSAG 1997
+ + + + L+ ++ L ++
Sbjct: 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIP 122
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
+ E++P L+ + + +++ + + + + P L
Sbjct: 123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-------------- 168
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AETVTLVIDEEGVE 2111
IL A++ M ++ +V+ A A E D+E
Sbjct: 169 -------------KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER 215
Query: 2112 SLVSELLKGVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166
+ +++ + R +A ++ +Y+ + Y+ + T+ + SD D
Sbjct: 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI--TIEAMKSDID 273
Query: 2167 STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226
+ E + D + + + + P F A
Sbjct: 274 EVALQGI-------------EFWSNVCDEEMDLAIEASEAAEQGRP--PEHTSKFYAKGA 318
Query: 2227 LQPLLPIFLQGLISGSAE-------LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
LQ L+PI Q L + A + L L + ++P P I+
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IVPHVLPFIKE 373
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIA-LKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 2338
W+ + A + I+ + LKP + Q T I+ ++D + VR +AA +G
Sbjct: 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433
Query: 2339 KLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398
++ +LL ++D + + ++G+ A V+S V +S L +
Sbjct: 434 RIC-----------ELLPEAAINDVYLAPLLQCLIEGL--SAEPRVASNV-CWAFSSLAE 479
Query: 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 2458
Y D +S E + L E + R + ++
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 2459 HNPSAIS--MSPLFLSILDRLKSSLK--------DEKFPLREASTKALGRLLLHQIQSGP 2508
++ + L I++RL+ L+ ++ + + L +
Sbjct: 538 NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 597
Query: 2509 ANTTVVVDILASVVSALH---DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC 2565
+ + D++ + + + S V+ AL A+ ++ + + ++ F P L
Sbjct: 598 QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 657
Query: 2566 LKDGSTP-VRLAA 2577
LK+ + V LAA
Sbjct: 658 LKNYAEYQVCLAA 670
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 46/255 (18%)
Query: 2325 STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384
S + A+ G + D + LL ++ R + L +
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDDELFRLLDD---HNSLKRISSARVL-QLRGGQ---- 53
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM--SQCMEDGQLADLLQELLNLASSPS 2442
+ + + R A ILG + + ED L LN S
Sbjct: 54 ------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKS 104
Query: 2443 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502
R ++ A + NP I+++ + + D+ +R A+ A+ +
Sbjct: 105 ACVRATAIESTAQRCKKNPIYS------PKIVEQSQITAFDKSTNVRRATAFAISVI--- 155
Query: 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 2562
N + +L ++ L D + +VR A A+ N
Sbjct: 156 -------NDKATIPLL---INLLKDPNGDVRNWAAFAININKYDNSDIR--------DCF 197
Query: 2563 AECLKDGSTPVRLAA 2577
E L+D + VR+ A
Sbjct: 198 VEMLQDKNEEVRIEA 212
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 8e-15
Identities = 44/336 (13%), Positives = 86/336 (25%), Gaps = 69/336 (20%)
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305
+ +A+ G K+ L R++ D + + L
Sbjct: 7 KRKASKEYGLY------NQCKKLNDD---ELFRLLDDHN-SLKRISSARVL------QLR 50
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAG 2364
+ + I+ D R A LG++ D + L + A
Sbjct: 51 GGQDAVRLA----IEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSAC 106
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+R + + K V+ + + +VR + A + + D
Sbjct: 107 VRATAIESTAQRCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAIS----VIND 157
Query: 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 2484
LL LL P+ R+ + N D L+D+
Sbjct: 158 KATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIR----------DCFVEMLQDK 204
Query: 2485 KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544
+R + L V+ +L L + V + A +
Sbjct: 205 NEEVRIEAIIGLSYR----------KDKRVLSVL---CDELKKN--TVYDDIIEAAGEL- 248
Query: 2545 KANPSAIMVHVALFGPALAECLKDGSTP-VRLAAER 2579
+ + + P L L + +A
Sbjct: 249 -GDKTLL--------PVLDTMLYKFDDNEIITSAID 275
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 44/306 (14%), Positives = 83/306 (27%), Gaps = 66/306 (21%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + L D N R ++ L ++ L + D N+ R
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARV---LQLRGGQDAVRLAIEFCSD----KNYIRRDIG 74
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+LG + + + +L M +D
Sbjct: 75 AFILGQI---------------------KICKKCEDNVFNIL-----------NNMALND 102
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
S VR A+ P +I+ + S+ R+ A+ +
Sbjct: 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQS----QITAFDKSTNVRRATAFAISVIND- 157
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
+ IP+L LKDP+ R ++ ++ L
Sbjct: 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ 202
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA 2035
D EVR A + S ++ L L+ + D ++ ++
Sbjct: 203 DKNEEVRIEAIIGLSYR-------KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLP 255
Query: 2036 VLPHIL 2041
VL +L
Sbjct: 256 VLDTML 261
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 48/310 (15%)
Query: 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
+QC +L +L D + + + LQ G V + +D N
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNY 68
Query: 1552 HTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
+ IL Q + +L + L ++SA + A + C
Sbjct: 69 IRRDIGAFILGQIKICKKCEDNVFNILN---NMALNDKSACVRATAIESTAQRCKKNPIY 125
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
++ + + D VR A AI + N + L++ LK N
Sbjct: 126 SP------KIVEQSQITAFDKSTNVRRATAFAISVI-------NDKATIPLLINLLKDPN 172
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
+V R+ AA ++ + I + + VR + L
Sbjct: 173 GDV-RNWAAFAIN--INKYDN---SDIRDCFVEMLQDKNEEVRIEAI-------IGLS-Y 218
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
++ ++VL + D L V D + A E T LP+L + D+
Sbjct: 219 RKD--KRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDNE 268
Query: 1791 IRQSSVELLG 1800
I S+++ L
Sbjct: 269 IITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 47/323 (14%), Positives = 99/323 (30%), Gaps = 53/323 (16%)
Query: 2095 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154
++A++ L + + EL + + D+ + R SSA ++ +
Sbjct: 8 RKASKEYGLYNQCK--KLNDDELFRLLDDHNSLKRISSARVLQLR----------GGQDA 55
Query: 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 2214
+ I SD + L ++ + K+ + + ++ + + R
Sbjct: 56 VRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNILNNMALNDKSACVRATAIE 113
Query: 2215 PILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG 2274
P ++ S +R A + + + IP
Sbjct: 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI--------NDKATIP--- 162
Query: 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAA 2334
LI ++ D V++ ++ I + ++ ++ LQD VR A
Sbjct: 163 LLINLLKDP-NGDVRNWAAFAIN-INKYDNSDIRDCF-------VEMLQDKNEEVRIEAI 213
Query: 2335 LALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS 2394
+ L + L +L + + I+ A G L +
Sbjct: 214 IGLSYRKDKRV-LSVLCDEL------KKNTVYDDIIEAA-GELGDK----------TLLP 255
Query: 2395 VLKDLVYHDDD-HVRVSAASILG 2416
VL ++Y DD + SA L
Sbjct: 256 VLDTMLYKFDDNEIITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 44/293 (15%)
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
L L +S +R + R L G + + D + RR L +
Sbjct: 28 LFRLLDDHNSLKRISSARVLQLR----GG---QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80
Query: 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 2009
+ + AL D VR +A + + K + + +IV
Sbjct: 81 IKICKKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-PKIVEQSQ 134
Query: 2010 HALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
D T+ + I T +L ++L K + + + A A+ + +
Sbjct: 135 ITAFDKSTNVRRATAFAISVINDKATIPLLINLL-KDPNGDVRNWAAFAIN-INKYDNS- 191
Query: 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
I + + D + +V+ EA ++ D+ + L EL + +
Sbjct: 192 ------DIRDCFVEMLQDKNEEVR---IEAIIGLSYRKDKRVLSVLCDEL------KKNT 236
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV-AAAWEALSR 2179
+ G ++ L +L D + +A + L R
Sbjct: 237 VYDDIIEAAGEL----------GDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 66/284 (23%)
Query: 1897 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956
S++ +++ A + G L + L R L D ++ +R L
Sbjct: 2 SNTYQKRKASKEYG-----LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG---- 52
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016
+ + D R+ + + D + L + +D+
Sbjct: 53 -------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE--DNVFNILNNMALNDK 103
Query: 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076
++ VR TA + + + I+
Sbjct: 104 SAC-----------VRATA------------------IESTAQRCKKNP----IYSPKIV 130
Query: 2077 PALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
D +V+ + A ++++ D+ + L+ LLK D +R +A+ I
Sbjct: 131 EQSQITAFDKSTNVR---RATAFAISVINDKATIPLLI-NLLK---DPNGDVRNWAAFAI 183
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 2180
++ ++ + +L D + A LS
Sbjct: 184 NINKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 67/335 (20%)
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
SN + A++ + L L D L R
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDD-ELFRLLD-------------DHNSLKR------- 40
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA--GIMIIDKHGRDNVSLLFPIF 1259
S+A VL+ + + I +D N R I I K + ++L +
Sbjct: 41 ISSARVLQLRGGQDAVRLAI-EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99
Query: 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRA 1319
N D+ VR + + A+ K+ +V++ S V+RA
Sbjct: 100 LN-------DKSAC--VRATAI---ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRA 147
Query: 1320 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ +S + + L+ L+K R AAF + I+ I
Sbjct: 148 TAFAISVI------NDKATIPLLI-NLLKDPNGDVRNWAAFAI-------NINKYDNSDI 193
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
E L D+N R E A++ L + ++L +L V
Sbjct: 194 RDCFVEMLQDKNEEVRIE-AIIG-------LSYRKDK---RVLSVLCDELKKNTVYDD-- 240
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
A +L + + VL ++L +D T
Sbjct: 241 ---IIEAAG-ELGDKTLLPVLDTMLYKFDDNEIIT 271
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 40/287 (13%), Positives = 84/287 (29%), Gaps = 53/287 (18%)
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115
+ L G + + D + + A + + + E V
Sbjct: 43 SARVLQLRGGQ-------DAVRLAIEFCSDKNYIRRD---IGAFILGQIKICKKCEDNVF 92
Query: 2116 ELLKGV--GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+L + D A +R ++ K + +Y +P ++ + D + A
Sbjct: 93 NILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRAT 148
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233
A+S + + I ++ + + + + R I I + +
Sbjct: 149 AFAISVIND-------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNSDIRDCFV-- 198
Query: 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAIL 2293
+ L + E+R +A +GL ++ L L + V I+
Sbjct: 199 --EMLQDKNEEVRIEAIIGLSYR---KDKRVLS--------VLCDELKKN---TVYDDII 242
Query: 2294 STLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGK 2339
G + K LP L L + +SA L +
Sbjct: 243 EAA------GELGDKTLLPVLD----TMLYKFDDNEIITSAIDKLKR 279
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-15
Identities = 82/551 (14%), Positives = 157/551 (28%), Gaps = 97/551 (17%)
Query: 2076 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 72
Query: 2128 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
R +A + + L + I L+ +L + + A L ++
Sbjct: 73 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 128
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
Q +R A GG L + L + +
Sbjct: 129 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 156
Query: 2246 REQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR- 2301
L L E L L+ I+ ++ L ++
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQ---ALVNIMRTYTYEKLLWTTSRVLKVLSVC 213
Query: 2302 ---KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV---DPLVGDLL 2355
K I + L L D ++ + + L LS +T+ + L+G L+
Sbjct: 214 SSNKPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 269
Query: 2356 SSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY--HDDDHVRVSAAS 2413
L D + L + + K+ ++ L V D + + A
Sbjct: 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329
Query: 2414 ILGIMSQCMEDGQL-------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
L ++ ++ ++ L ++ L PS + + L P+ +
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 389
Query: 2467 ------SPLFLSILDR------------LKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508
P + +L R E + E G LH +
Sbjct: 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG--ALHILARDV 447
Query: 2509 ANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECL 2566
N V+ + V L+ ++R A L +A+ +A + L E L
Sbjct: 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507
Query: 2567 KDGSTPVRLAA 2577
+ V A
Sbjct: 508 HSRNEGVATYA 518
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 7e-08
Identities = 68/540 (12%), Positives = 160/540 (29%), Gaps = 82/540 (15%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----AIDEIVPTLLHALEDDQTSDT-- 2020
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 2021 ----ALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGLNFHLG 2073
L L +P LV + P+ + +A+ L + +
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 2074 TI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGV 2121
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT- 193
Query: 2122 GDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 194 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRN 250
Query: 2180 VVASVPKEVQPS-YIKVIRDAISTSRDKERRK--------KKGGPILIPGFCLPKALQPL 2230
+ + K+ + + + + C ++ L
Sbjct: 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRIIGDRFPWQ 2287
+ L+ ++ E A L L E + + + + +++++ W
Sbjct: 311 VRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368
Query: 2288 VKSAILSTLSI----------IIRKGGIALKPFLPQLQTT---------------FIKCL 2322
+ A + + + +G I P L QL
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAI---PRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425
Query: 2323 QDSTRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGV 2376
+ AL L A ++ + L I+ L
Sbjct: 426 GVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL-CE 483
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
L ++ + + L +L++ ++ V AA++L MS+ L EL +
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-05
Identities = 65/464 (14%), Positives = 130/464 (28%), Gaps = 84/464 (18%)
Query: 1284 TGALAKHLAKDDPKVHAV-----VDKLLDVLNTPSEAVQRAVSSCLS------------- 1325
L L + AV + K++ +LN + + CL
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 1326 -------PLMQ--------SMQDEAPTLVSRL------------------LDQLMKSDKY 1352
L+ + ++ L L +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 1353 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC----E 1408
+ + L + G+ TL + L + A L +
Sbjct: 239 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYK 296
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPS 1462
+ + I+ L ++ D+ A +R ++++ V+L LP
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 1463 LLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
++K L W +++V L+ +A C +P+L ++L H Q
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 1522 ALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579
Q V ++ EI L L + H + + ++ L V
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVI-----------RGLNTIPLFVQ 464
Query: 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+ L ++ AA ++ + E + I G + ++L V + A
Sbjct: 465 L----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYA 518
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683
A + + ++ L L +L A GL
Sbjct: 519 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLD 562
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 72/547 (13%), Positives = 162/547 (29%), Gaps = 101/547 (18%)
Query: 1886 LMNTLISSLASSSS-ERRQVAGRALGEL---------VRKLGERVLPSIIPILSRGLKDP 1935
+++ ++ ++ +++ E + L L + K G IP L + L P
Sbjct: 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG------GIPALVKMLGSP 110
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL-FK 1994
S L ++ +++ + + + L + ++ L +
Sbjct: 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170
Query: 1995 SAGMQAI---DEIVPTLLHALEDDQTSD------TALDGLKQILSVRTTAVLPHILPKLV 2045
+ + I L++ + L L S + V + L
Sbjct: 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230
Query: 2046 HLPLSAFN----AHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQ--------S 2092
L+ + + L L ++ + +L L+ +G DD++V +
Sbjct: 231 LH-LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 2093 LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF----YKNSKLYLV 2148
L + +V G+E+LV +L+ ++ I + + + +
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNA 347
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA--------I 2200
+ ++ LL + A L R +A P+ +R+ +
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-----CPANHAPLREQGAIPRLVQL 402
Query: 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 2260
++ +++ F ++ E+ E L L
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRME---------------EIVEGCTGALHILARDV 447
Query: 2261 SEQSL--KEFVIPITGPLIRIIGDRFPWQVKSA--ILSTLS-------IIIRKGGIALKP 2309
+ + IP ++++ + A +L L+ I +G A
Sbjct: 448 HNRIVIRGLNTIP---LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP-- 502
Query: 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA--LSTRVDPLVGDLLSSLQVSD-AGIR 2366
+ L V + AA L ++S L +L SSL ++
Sbjct: 503 --------LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWN 554
Query: 2367 EAILTAL 2373
E L
Sbjct: 555 ETADLGL 561
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 4e-15
Identities = 94/622 (15%), Positives = 180/622 (28%), Gaps = 107/622 (17%)
Query: 2014 DDQTSDTALDGLKQILSVRTT---AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070
D Q + T ++ + T +P H A L +N+
Sbjct: 82 DGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINY 141
Query: 2071 HLGTI-----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 2117
+P L + D+D V L+K+ A ++ + V ++V +
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
N R ++ + + L + I L+ +L + + A
Sbjct: 202 QNT---NDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAIT 256
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235
L ++ Q +R A GG L +
Sbjct: 257 TLHNLLLH-----QEGAKMAVRLA-------------GG----------------LQKMV 282
Query: 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK---SAI 2292
L + + L L E L L+ I+ ++ S +
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342
Query: 2293 LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345
L LS+ I+ GG+ L L D ++ + + L LS +T
Sbjct: 343 LKVLSVCSSNKPAIVEAGGM---QALGLH-------LTDPSQRLVQNCLWTLRNLSDAAT 392
Query: 2346 RV---DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY- 2401
+ + L+G L+ L D + L + + K+ ++ L V
Sbjct: 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452
Query: 2402 -HDDDHVRVSAASILGIMSQCMEDGQLA-------DLLQELLNLASSPSWAARHGSVLVF 2453
D + + A L ++ +D ++A L ++ L PS + +
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512
Query: 2454 ATFLRHNPSAISM------SPLFLSILDR----------LKSSLKDEKFPLREASTKALG 2497
L P+ + P + +L R + + + +R
Sbjct: 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572
Query: 2498 RLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555
LH + N V+ + V L+ ++R A L +A+ +A +
Sbjct: 573 TGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632
Query: 2556 ALFGPALAECLKDGSTPVRLAA 2577
L E L + V A
Sbjct: 633 EGATAPLTELLHSRNEGVATYA 654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 6e-09
Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 43/287 (14%)
Query: 2318 FIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSDAGIRE 2367
K L D + V + AA+ + +LS V +V + ++ +D
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETAR 211
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYS-----VLKDLVYHDDDHVRVSAASILGIMSQCM 2422
L + S + ++ L +++ D V A + L +
Sbjct: 212 CTSGTLHNL------SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265
Query: 2423 EDGQL----ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS---AISMSPLFLSILD 2475
E ++ A LQ+++ L + + + N I S ++++
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 325
Query: 2476 RLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVR 2533
+++ ++ L +++ L L + +N +V+ + ++ L D S +
Sbjct: 326 IMRTYTYEK---LLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 2534 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ L L++++ A + L L + L V A
Sbjct: 378 QNCLWTLRNLSDAATKQEGMEGLL--GTLVQLLGSDDINVVTCAAGI 422
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-07
Identities = 89/601 (14%), Positives = 178/601 (29%), Gaps = 124/601 (20%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----DEIVPTLLHALEDDQTSDT-- 2020
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 2021 ----ALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGLNFHLG 2073
L L +P LV++ P+ + HA+ L + +
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271
Query: 2074 TI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGV 2121
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT- 329
Query: 2122 GDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 330 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRN 386
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239
+ + K+ ++ LL +Q L
Sbjct: 387 LSDAATKQE-------------------------------------GMEGLLGTLVQLLG 409
Query: 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITG--PLIRIIGDRFP-WQVKSAILSTL 2296
S + AA L L + K V + G L+R + + + L
Sbjct: 410 SDDINVVTCAAGILSNL--TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467
Query: 2297 SIIIRKGG--------IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-- 2346
+ + + L LP + +K L + A + L + AL
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVV----VKLLHPPSHWPLIKATVGLIRNLALCPANH 523
Query: 2347 --------VDPLVGDLLSS---------------LQVSDAGIREAILTALKGVLKHAGKS 2383
+ LV LL Q + E I+ A G L +
Sbjct: 524 APLREQGAIPRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582
Query: 2384 VSSAVKIR---VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL---ADLLQELLNL 2437
+ + + IR + L+Y ++++ AA +L ++Q E + L L
Sbjct: 583 IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642
Query: 2438 ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKAL 2496
S + + V P + L SSL + E E L
Sbjct: 643 LHSRNEGVATYAAAVLFRMSEDKPQDYKK-----RLSVELTSSLFRTEPMTWNETGDLGL 697
Query: 2497 G 2497
Sbjct: 698 D 698
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-04
Identities = 65/462 (14%), Positives = 138/462 (29%), Gaps = 82/462 (17%)
Query: 1284 TGALAKHLAKDDPK------VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
L +L + + K++ +LN + + CL L Q+
Sbjct: 255 ITTLH-NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313
Query: 1338 LVS----RLLDQLMKSDKYGERRGAAFGL----------------AGVVK---------- 1367
+++ + L +M++ Y + + AG ++
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 373
Query: 1368 -------GFGISSLKKYGIAATLREG-------LADRNSAKRREGALLAFECLC----EK 1409
+ + +L EG L + A L +
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPSL 1463
+ + I+ L ++ D+ A +R ++++ V+L LP +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493
Query: 1464 LKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQ 1520
+K L W +++V L+ +A C +P+L ++L H Q ++
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580
QQ ++ EI L L + H + + ++ L V +
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVI-----------RGLNTIPLFVQL 601
Query: 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++ AA ++ + E + I G + ++L V + AA
Sbjct: 602 ----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYAA 655
Query: 1641 RAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
+ + ++ L L +L GL
Sbjct: 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-14
Identities = 80/553 (14%), Positives = 155/553 (28%), Gaps = 101/553 (18%)
Query: 2076 LPALLSAMGDDDMDVQS--------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V + L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 75
Query: 2128 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
R +A + + L + I L+ +L + + A L ++
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 131
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
Q +R A GG L + L + +
Sbjct: 132 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 159
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR---- 2301
L L E L L+ I+ ++ L ++
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219
Query: 2302 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR---VDPLVGDLLSSL 2358
K I + L L D ++ + + L LS +T+ ++ L+G L+ L
Sbjct: 220 KPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275
Query: 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH--VRVSAASILG 2416
D + L + + K+ ++ L V D + A L
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Query: 2417 IMSQCMEDGQL-------ADLLQELLNLASSPS--------WAA---------------R 2446
++ ++ ++ L ++ L PS
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 2447 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS 2506
G++ L + ++ E+ + E T AL L
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE--IVEGCTGALHILARD---- 449
Query: 2507 GPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 2564
N V+ + V L+ ++R A L +A+ +A + L E
Sbjct: 450 -VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 508
Query: 2565 CLKDGSTPVRLAA 2577
L + V A
Sbjct: 509 LLHSRNEGVATYA 521
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 4e-14
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 12/210 (5%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATL 1383
+ +Q L + + + A L + +S+ TL
Sbjct: 35 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL 94
Query: 1384 REGLADRNSAKRREGALL---AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
R + N A + L E + + + + V +P LL+ + +R +
Sbjct: 95 R--FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+ + + P LL L+ K R + + ++ A + +
Sbjct: 153 RDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK-SLSV 208
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ + D V++A L
Sbjct: 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFE 238
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504
+SQL SL+ L K ++ +++ L +A +P+ L ++
Sbjct: 33 DEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWC 92
Query: 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDHTKYSL 1557
T +T+P + + +I++ E+++ VP LL+ + D+ + S+
Sbjct: 93 TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
+ D + P++ L+ ++A + + ++ +T
Sbjct: 153 ----RDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY---ITNAGISPLKS 205
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658
+ V + D VR+ A + + + G++ +
Sbjct: 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 5e-06
Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+ + + + Q + +P +L + +++R + +VL + + P
Sbjct: 114 IVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTP 170
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLL 1803
+ D + + N R R + ++ +
Sbjct: 171 MLLDALKSKNARQRSECLLVIEYYI 195
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 9e-05
Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 15/191 (7%)
Query: 1989 FSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHILPKLVHL 2047
F FK + A+D L+ + S + D L + ++R P L K++
Sbjct: 56 FHKDFKQ-HLAALDS----LVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE- 109
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
+ + + P + +P LL G+ ++++ ++ ++ V+
Sbjct: 110 ----LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-- 163
Query: 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS 2167
G + LL + A R +I Y+ N+ + + + T+ + D D
Sbjct: 164 -GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPFVGDKDV 221
Query: 2168 TTVAAAWEALS 2178
AA L
Sbjct: 222 NVRNAAINVLV 232
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 8/206 (3%)
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
D H ++ + LL+ E + K ++ + L
Sbjct: 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL 117
Query: 1607 VTEPKDMI--PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664
+ + + + + +P + + +R+ + L +G + LLD
Sbjct: 118 IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLD 174
Query: 1665 ALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
ALKS N+ RS + + G + + + + +VR+ + +
Sbjct: 175 ALKSKNARQ-RSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLAD 1748
+ G Q ++ + +
Sbjct: 234 CFKFEGDQMWKAAGRMADKDKSLVEE 259
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 3e-04
Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 25/246 (10%)
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSP 1326
+DE L +L L D K H A +D L+ + +T ++ L
Sbjct: 32 TDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKW 91
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA--TLR 1384
+ P + ++L+ + +++ ++ A L
Sbjct: 92 CTLRFFETNPAALIKVLELCK-------------VIVELIRDTETPMSQEEVSAFVPYLL 138
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444
+ R L + +G ++M P+LL A + R
Sbjct: 139 LKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVI 191
Query: 1445 RAMMSQ--LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
++ +S V ++ + DK + +++ +L A Q+ + ++
Sbjct: 192 EYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
Query: 1503 KLTEVL 1508
K ++
Sbjct: 252 KDKSLV 257
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 8e-14
Identities = 49/308 (15%), Positives = 91/308 (29%), Gaps = 41/308 (13%)
Query: 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 2369
F P + + L R + A L L V + S + + E
Sbjct: 59 FTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQF 118
Query: 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---Q 2426
A +R + L+ + + + A S I +++
Sbjct: 119 NVQ-------APSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIEN 171
Query: 2427 LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILD-RLKSSLKDEK 2485
+ D +++ + S W RHG+ L FA + + S L ++ L +K
Sbjct: 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDK 231
Query: 2486 F----------PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRR 2535
F P+R+A+ L R+ + DI+ +V L +V+
Sbjct: 232 FNDFVDDRTVAPVRDAAAYLLSRIYPLIGPN---------DIIEQLVGFLDSGDWQVQFS 282
Query: 2536 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGIIYSR 2595
L AL + + L L ++L + A L I
Sbjct: 283 GLIALGYLK-----EFVEDKDGLCRKLVSLLSSPDEDIKLLS------AELLCHFPITDS 331
Query: 2596 STKIYNRL 2603
+ +
Sbjct: 332 LDLVLEKC 339
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-05
Identities = 64/436 (14%), Positives = 125/436 (28%), Gaps = 69/436 (15%)
Query: 2093 LAKEAAETVTLVIDEEGVES--LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL--- 2147
L + + I E + ++ + + + + RR+ A ++ KL
Sbjct: 41 LKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFK 100
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207
++ + L + + + + + V+ +++ I + +
Sbjct: 101 IEYKESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIK 160
Query: 2208 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267
R K PI + + L+S R A L + +
Sbjct: 161 RHKVDERPI--------ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ 212
Query: 2268 FVIP--ITGPLIRIIG-DRF----------PWQVKSAILSTLSIIIRKGGIALKPFLPQL 2314
+ + + I+ D+F P V+ A LS I I + QL
Sbjct: 213 IRVDSKLFSKIYEILVTDKFNDFVDDRTVAP--VRDAAAYLLSRIYPL--IGPNDIIEQL 268
Query: 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALK 2374
L V+ S +ALG L D L L+S L D I+ L
Sbjct: 269 VGF----LDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLC 324
Query: 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434
+ V + ++ + VS S L ++++ + + E
Sbjct: 325 HFP-------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPELSIPPER 376
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS----------LKDE 2484
L + S L+++ L L +E
Sbjct: 377 LK---------------DIFPCFTSPVPEVRTS--ILNMVKNLSEESIDFLVAEVVLIEE 419
Query: 2485 KFPLREASTKALGRLL 2500
K +RE + K L +
Sbjct: 420 KDEIREMAIKLLKKRR 435
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-05
Identities = 56/458 (12%), Positives = 127/458 (27%), Gaps = 89/458 (19%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTK 1554
P I+ + +L + + G L+ + K + + L+ +
Sbjct: 60 TPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFN 119
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
+ + + A + + + + K ++ V +
Sbjct: 120 VQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLD----- 174
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKS 1668
++ L+ R A A ++ + L S + + L +
Sbjct: 175 -----FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVT 229
Query: 1669 DNSN----------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718
D N V R AA LS + +G I+ ++ V+ L
Sbjct: 230 DKFNDFVDDRTVAPV-RDAAAYLLSRIYPLIGP---NDIIEQLVGFLDSGDWQVQFSGLI 285
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
YL +F + ++ L+ +E ++ + L T SL L+L
Sbjct: 286 ALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL---LCHFPITDSLDLVLE 337
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
W + + + S ++ + ++
Sbjct: 338 KC--------W-------KNIESE-----------------ELISVSKTSNLSLLTKIYR 365
Query: 1839 RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS- 1893
+ E L ++ + VR + L +K + ++ L++
Sbjct: 366 ENPELSIPPERLKDIFPCFTSPVPEVRTSIL-----------NMVKNLSEESIDFLVAEV 414
Query: 1894 -LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930
L E R++A + L + +L + I
Sbjct: 415 VLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGS 452
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 9e-04
Identities = 39/250 (15%), Positives = 76/250 (30%), Gaps = 37/250 (14%)
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-----MQAIDEIVPT-LLH 2010
+L F +++ L R A LAF+ +F +D + + +
Sbjct: 170 ENVLDFFEQIS----DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYE 225
Query: 2011 ALEDDQTSDTALDGLKQILSVRTTA------VLPHILPKLVHLPLSAFNAH--------- 2055
L D+ +D D + VR A + P I P + L F
Sbjct: 226 ILVTDKFNDFVDDRT--VAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSG 283
Query: 2056 --ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
ALG L E + L+S + D D++ L+ E + + V
Sbjct: 284 LIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEK 338
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ ++ S S+ L+ Y+ + + P + + + +
Sbjct: 339 CWKNIESEELISVSK-TSNLSLLTKIYRENPELSIP--PERLKDIFPCFTSPVPEVRTSI 395
Query: 2174 WEALSRVVAS 2183
+ +
Sbjct: 396 LNMVKNLSEE 405
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 1e-13
Identities = 63/385 (16%), Positives = 143/385 (37%), Gaps = 37/385 (9%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRA 1710
++ +++L L ++ S A+Q ++ + A + + ++P ++ N ++ +
Sbjct: 85 ANARREVKNYVLQTLGTETYR--PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS 142
Query: 1711 SV--RDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENES--VRDAALGAGHVLV 1765
+ ++ L Y+ + + Q Q+ ++L AI+ G+ E S V+ AA A +
Sbjct: 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202
Query: 1766 EHYATTSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--------VAGTSGK 1812
E ++ V + + R+R ++++ L ++ +
Sbjct: 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262
Query: 1813 ALLEG-GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+E SD + + + IE E+ A+ + +
Sbjct: 263 ITIEAMKSDIDEVALQG-----IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK----- 312
Query: 1872 VANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928
L+ ++P+L TL + AG L L + ++P ++P +
Sbjct: 313 -FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
+K+P R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 1989 FSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + AI D + LL L
Sbjct: 432 VGRICELLPEAAINDVYLAPLLQCL 456
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 5e-12
Identities = 69/475 (14%), Positives = 147/475 (30%), Gaps = 38/475 (8%)
Query: 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 2131
L TIL +S D A++ E + + L L N R +
Sbjct: 3 LITILEKTVSP----DRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVA 56
Query: 2132 SAYLI------------GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ I + + + + + ++ L +A+
Sbjct: 57 AGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 116
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPI 2233
A +P P I + ++ E K+ + I L +L
Sbjct: 117 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176
Query: 2234 FLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
+QG+ S ++ A L +E T KE ++ +V+ A
Sbjct: 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236
Query: 2292 ILSTLSIIIRKGGIALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 2350
L L I+ ++ ++ L I+ ++ V + +
Sbjct: 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296
Query: 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 2410
+ + + + AL+ ++ + + + + DD + +
Sbjct: 297 ASEAAEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKA 347
Query: 2411 AASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF 2470
A L +++ C ED + +L + +P W R +V+ F L P + PL
Sbjct: 348 AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKPLV 406
Query: 2471 LSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 2525
+ + L +KD +R+ + +GR + + N + +L ++ L
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGR-ICELLPEAAINDVYLAPLLQCLIEGL 460
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-07
Identities = 79/457 (17%), Positives = 140/457 (30%), Gaps = 74/457 (16%)
Query: 1958 QLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
L E +PT L + R +AGL S + L
Sbjct: 24 FLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83
Query: 2012 LEDDQTS--DTALDGLKQILSVRTTAVL---------------PHILPKLVHLPLS---- 2050
+ + + L L ++A P ++P+LV +
Sbjct: 84 DANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 143
Query: 2051 -AFNAHALGALA----EVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AE 2099
L A+ ++ L IL A++ M ++ +V+ A A E
Sbjct: 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAY--LIGYFYKNSKLYLVDEAPNMIST 2157
D+E + +++ + R +A L+ + P + +
Sbjct: 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
I + E S V + AI S E+ + P
Sbjct: 264 TIEAMKSDIDEVALQGIEFWSNVCDEE-----------MDLAIEASEAAEQGRP---PEH 309
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQ-------AALGLGELIEVTSEQSLKEFVI 2270
F ALQ L+PI Q L + A + L L + ++
Sbjct: 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IV 364
Query: 2271 PITGPLI-RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
P P I I + +A+++ I+ LKP + Q T I+ ++D + V
Sbjct: 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424
Query: 2330 RSSAALALGKLSAL-------STRVDPLVGDLLSSLQ 2359
R +AA +G++ L + PL+ L+ L
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 7e-07
Identities = 55/452 (12%), Positives = 126/452 (27%), Gaps = 95/452 (21%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLK------------EIMPVLMNTLISSLASSS 1898
+ S R AA K + + +K + N ++ +L + +
Sbjct: 44 LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET 103
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS--RRQGVCIGLSEVMASAGK 1956
+ G ++ P +IP L + +P+++ ++ + +
Sbjct: 104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163
Query: 1957 SQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL-- 2012
QL +E++ I + V+ +A A + E + +
Sbjct: 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223
Query: 2013 -----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH-------ALGAL 2060
D + AL L +I+S+ + ++ P L + + A + +
Sbjct: 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283
Query: 2061 AEVAGPGL------------------------NFHLGTILPALLSAMGDDDMD------- 2089
+ V + L ++P L + D +
Sbjct: 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Query: 2090 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SKLYLV 2148
A + +++ V ++ + + + + R ++ G + L
Sbjct: 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208
+ TLI L+ D A + R+ +P+
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN------------------ 445
Query: 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQGLIS 2240
L PLL ++GL +
Sbjct: 446 ---------------DVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 60/490 (12%), Positives = 145/490 (29%), Gaps = 81/490 (16%)
Query: 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364
+L+ +P A L ++ + PT + L L R AA
Sbjct: 6 ILEKTVSPDRLELEAAQKFLE---RAAVENLPTFLVELSRVLANPGNSQVARVAA----- 57
Query: 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424
++ L ++ + + ++ + ++
Sbjct: 58 ---------------GLQIKNSLTSKDPDIKAQYQ--------QRWLAIDANARREVKNY 94
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L + A++C A +++ ++P L+ + + K+S+++ +
Sbjct: 95 VLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154
Query: 1483 G-AMAYCAPQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIK-NPEIASL 1538
G P+QL +I+ + + + P V+ A AL K N + S
Sbjct: 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD------APSLALLV-PIVHRGLRERSAE 1591
++ + + + + V + + + I ++ E
Sbjct: 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIP---------------YIGLLLPEVKKVLVDPIPE-- 1634
+ + N+C + Y L + +L + +
Sbjct: 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334
Query: 1635 ---------VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
A + L ++ P ++ ++ + +K+ + R A +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCI 393
Query: 1686 LAALGTVYFEH----ILPDIIRNCSHQRASVRDGYL----TLFKYLPRSLGVQFQNYLQQ 1737
L + +P +I VRD + + LP + YL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--AINDVYLAP 451
Query: 1738 VLPAILDGLA 1747
+L +++GL+
Sbjct: 452 LLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 45/322 (13%)
Query: 1391 NSAKRREGALLAFECLCEKL-GRLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDT--------------------HPKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ A G + P + P + +P + +++ DP VR AA +G + +
Sbjct: 382 YRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKS 1668
E L+ L++ L +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 9e-04
Identities = 55/354 (15%), Positives = 128/354 (36%), Gaps = 45/354 (12%)
Query: 1135 LFKALSHSN--YNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191
L +++ N +++ + EA+ + P+ +Q + + + I+ + + +
Sbjct: 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV-- 190
Query: 1192 LGRQGIALALHSAADVLRT-KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKH 1247
+ AL ++ + + D F+ + A + VR L + I+ +
Sbjct: 191 --KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248
Query: 1248 GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
+ + + P + A + ++ +G+ ++ V D+ +D
Sbjct: 249 YQYMETYMGPALFAITIE-AMKSDIDEVALQGIEFWS---------------NVCDEEMD 292
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE------RRGAAFG 1361
+ SEA ++ + + LV L L K D+ + + A
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQ 1420
L + + + ++E + + + R+ A++AF C+ E +P VIQ
Sbjct: 352 LMLLATCCEDDIVPH--VLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMS------QLSAQGVKLVLPSLLKGLE 1468
+P L+ D V VR+ A + ++ + +L L++GL
Sbjct: 409 AMPTLIELMKDPSVVVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 48/230 (20%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 25 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 78
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR SAA LG + D + + L + L
Sbjct: 79 DE----------RAVEPLIKALKDEDGWVRQSAAVALG----QIGDERAVEPLIKALK-- 122
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 123 -DEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 169
Query: 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548
+ G + A++ + R+ A++ L++ N
Sbjct: 170 I------GGER-------VRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 48/239 (20%), Positives = 78/239 (32%), Gaps = 54/239 (22%)
Query: 2342 ALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400
A R DP V + +LQ +R A AL G + R L +
Sbjct: 11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------RAVEPLIKAL 59
Query: 2401 YHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHN 2460
+D VR +AA LG + ++ L+ R + + +
Sbjct: 60 KDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAVALGQI--GD 110
Query: 2461 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 2520
A+ + L +LKDE + +R A+ ALG + V+ L
Sbjct: 111 ERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GDERAVEPL-- 148
Query: 2521 VVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+ AL D+ VR+ A AL + A+ + + G+ R A
Sbjct: 149 -IKALKDEDGWVRQSAADALGEIG--GERVR--------AAMEKLAETGTGFARKVAVN 196
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 54/232 (23%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + + + D VR AA L G + + L+K L+D+ ++++
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKDEDAWVRRAAA 71
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539
LG + + V L + L D V+ + AL Q+G V
Sbjct: 72 DALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAV 114
Query: 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKK 1594
L+ L D + + + A +L + V + + L++ ++
Sbjct: 115 EPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
AA +G + ++K+ R VA + +
Sbjct: 162 SAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 46/213 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
P+ ++ + + L S +R AA LG++ E++++ PLI+ + D
Sbjct: 18 PEKVEMYI----KNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDE 62
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W V+ A L G I + + L IK L+D VR SAA+ALG++
Sbjct: 63 DAW-VRRAAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI--- 108
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
+ V L+ +L+ D +R A AL G + R L + +
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDE 155
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
D VR SAA LG + ++ +++L
Sbjct: 156 DGWVRQSAADALG----EIGGERVRAAMEKLAE 184
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 48/231 (20%)
Query: 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRG 1357
V+ + L S V+RA + L + DE L+ L D + RR
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRA 69
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
AA L + L + L D + R+ A +A LG++ +
Sbjct: 70 AADALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE- 111
Query: 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS
Sbjct: 112 --RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQS 162
Query: 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528
+ LG + ++ + ++ + L+ S
Sbjct: 163 AADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAA 70
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+ LG + + A + L++ D++G ++ LG+ + L D
Sbjct: 71 ADALGQIGDERA---VEPLIKALKDEDGWVR----QSAAVALGQIGDERAVEPLIKALKD 123
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
VR AA L EI + LI +L RQ A ALG
Sbjct: 124 EDWFVRIAAAFA-----------LGEIGDERAVEPLIKALKDEDGWVRQSAADALG---- 168
Query: 1915 KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
++G + + + + + R+ L
Sbjct: 169 EIGG---ERVRAAMEKLAETGTGFARKVAVNYLET 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
++ + ++ L DE+ VR AA A L + ++ L+ A++D ++ +RQS+
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADA---LGQIGDERAVEPLIKALKD----EDGWVRQSA 101
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
LG + + A L+ +D A LG + L D
Sbjct: 102 AVALGQIGDERAVEPLIKALK--DEDWFVRIAA-----AFALGEIGDERAVEPLIKALKD 154
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGEL 1912
VRQ+A L EI + + + + R+VA L
Sbjct: 155 EDGWVRQSAA-----------DALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 38/226 (16%)
Query: 1914 RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
R P + + + L+D S R+ L ++ + + + A
Sbjct: 10 AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKA 58
Query: 1974 LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSV 2031
L D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 59 LKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI--- 108
Query: 2032 RTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQ 2091
+ ++ L A AL E+ + L+ A+ D+D V+
Sbjct: 109 GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWVR 160
Query: 2092 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
A +A + E G E + + + K R+ + +
Sbjct: 161 QSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 199
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 33/134 (24%)
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
A H A LR +P + + +L+D+ + +R A+ ALG++
Sbjct: 1 AWSHPQFEKAAAPLRADPEKV----------EMYIKNLQDDSYYVRRAAAYALGKI---- 46
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563
V+ L + AL D+ + VRR A AL + + A+ L
Sbjct: 47 ------GDERAVEPL---IKALKDEDAWVRRAAADALGQI--GDERAV--------EPLI 87
Query: 2564 ECLKDGSTPVRLAA 2577
+ LKD VR +A
Sbjct: 88 KALKDEDGWVRQSA 101
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 45/193 (23%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 70
Query: 1558 DILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612
A +L + V + + L++ ++ AA +G +
Sbjct: 71 -------------ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113
Query: 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672
+ + K L D VR AA A+G + V L+ ALK ++
Sbjct: 114 --------VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGW 158
Query: 1673 VERSGAAQGLSEV 1685
V R AA L E+
Sbjct: 159 V-RQSAADALGEI 170
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 30/187 (16%)
Query: 1996 AGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 2053
A ++A E V + L+DD A L +I + ++ L +
Sbjct: 12 APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI---GDERAVEPLIKALKD-EDAWVR 67
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
A AL ++ + L+ A+ D+D V+ + AA + + DE VE L
Sbjct: 68 RAAADALGQIGDE-------RAVEPLIKALKDEDGWVR---QSAAVALGQIGDERAVEPL 117
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L D +R ++A+ +G + LI L D D +A
Sbjct: 118 IKAL----KDEDWFVRIAAAFALGEI----------GDERAVEPLIKALKDEDGWVRQSA 163
Query: 2174 WEALSRV 2180
+AL +
Sbjct: 164 ADALGEI 170
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 46/248 (18%), Positives = 78/248 (31%), Gaps = 60/248 (24%)
Query: 2333 AALALGKLSALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+ + DP V + +LQ +R A AL G + R
Sbjct: 3 GSHHHHHHT------DPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------R 45
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 2451
L + +D VR +AA LG + ++ L+ R + +
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511
+ A+ + L +LKDE + +R A+ ALG +
Sbjct: 99 ALGQI--GDERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GD 136
Query: 2512 TVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGST 2571
V+ L + AL D+ VR+ A AL + A+ + + G+
Sbjct: 137 ERAVEPL---IKALKDEDGWVRQSAADALGEI--GGERVR--------AAMEKLAETGTG 183
Query: 2572 PVRLAAER 2579
R A
Sbjct: 184 FARKVAVN 191
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 48/222 (21%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 20 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 73
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR SAA LG + D + + L + L
Sbjct: 74 DE----------RAVEPLIKALKDEDGWVRQSAAVALGQIG----DERAVEPLIKALK-- 117
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 118 -DEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 164
Query: 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 2540
+ G + A++ + R+ A++ L
Sbjct: 165 I------GGER-------VRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 57/242 (23%)
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED 1469
+P + + + + D VR AA L G + + L+K L+D
Sbjct: 7 HHHHTDP---EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKD 56
Query: 1470 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529
+ ++++ LG + + V L + L D V+ + AL Q+G
Sbjct: 57 EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD- 105
Query: 1530 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRG 1584
V L+ L D + + + A +L + V + +
Sbjct: 106 ------ERAVEPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKA 146
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644
L++ ++ AA +G + ++K+ R VA +
Sbjct: 147 LKDEDGWVRQSAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLE 194
Query: 1645 SL 1646
+
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 35/181 (19%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK L+D VR +AA ALG++ + V L+ +L+ D +R++ AL G +
Sbjct: 51 IKALKDEDAWVRRAAADALGQIGD-----ERAVEPLIKALKDEDGWVRQSAAVAL-GQIG 104
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR++AA LG + ++ L+
Sbjct: 105 DE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKAL 147
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
R + ++ + R+ + L
Sbjct: 148 KDEDGWVRQSAADALGEI--GGERVR----------AAMEKLAETGTGFARKVAVNYLET 195
Query: 2499 L 2499
Sbjct: 196 H 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 49/224 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
P+ ++ + + L S +R AA LG++ E++++ PLI+ + D
Sbjct: 13 PEKVEMYI----KNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDE 57
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W V+ A L G I + + L IK L+D VR SAA+ALG++
Sbjct: 58 DAW-VRRAAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI--- 103
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
+ V L+ +L+ D +R A AL G + R L + +
Sbjct: 104 --GDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDE 150
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 2447
D VR SAA LG + ++ +++L + + AR
Sbjct: 151 DGWVRQSAADALG----EIGGERVRAAMEKLAE---TGTGFARK 187
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 48/231 (20%)
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRGAA 1359
V+ + L S V+RA + L + DE L+ L D + RR AA
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRAAA 66
Query: 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419
L + L + L D + R+ A +A LG++ +
Sbjct: 67 DALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE--- 106
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS+
Sbjct: 107 RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQSAA 159
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
LG + ++ + ++ + L+ S+I
Sbjct: 160 DALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 33/214 (15%)
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1796
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAAA 66
Query: 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856
+ LG + + A L+ +D ++ LG+ + L D
Sbjct: 67 DALGQIGDERAVEPLIKALK--DEDGWVR-----QSAAVALGQIGDERAVEPLIKALKDE 119
Query: 1857 SLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
VR AA L EI + LI +L RQ A ALGE
Sbjct: 120 DWFVRIAAA-----------FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE---- 164
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
+G + + + + + R+ L
Sbjct: 165 IGG---ERVRAAMEKLAETGTGFARKVAVNYLET 195
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 32/182 (17%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+ + K L D VR AA A+G + V L+ ALK ++ V R AA
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWV-RQSAAV 98
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
ALG + E + +I+ + VR +LG + + ++ +
Sbjct: 99 -------ALGQIGDERAVEPLIKALKDEDWFVRIAAA-------FALG-EIGD--ERAVE 141
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L DE+ VR +A A L E + E R+ +V L
Sbjct: 142 PLIKALKDEDGWVRQSAADA---LGEIGGERVRAAMEKLAET----GTGFARKVAVNYLE 194
Query: 1801 DL 1802
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 54/289 (18%), Positives = 87/289 (30%), Gaps = 91/289 (31%)
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115
P + + + DD V+ AA + + DE VE L+
Sbjct: 3 GSHHHHHHTDPE-------KVEMYIKNLQDDSYYVRR---AAAYALGKIGDERAVEPLIK 52
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
L D A +RR++A +G + LI L D D +A
Sbjct: 53 AL----KDEDAWVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235
AL + I D +A++PL+
Sbjct: 99 ALGQ----------------IGD-------------------------ERAVEPLIKA-- 115
Query: 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295
L +R AA LGE+ E++++ PLI+ + D V+ +
Sbjct: 116 --LKDEDWFVRIAAAFALGEI---GDERAVE--------PLIKALKDE-DGWVRQSAADA 161
Query: 2296 LSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
L I GG ++ + K + T R A L +L
Sbjct: 162 LGEI---GGERVRAAM-------EKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 41/232 (17%)
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
+ H H + + + ++D D++ +R+++ LG + + A + L++
Sbjct: 1 MRGSHHHHHHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGDERAV---EPLIKA 53
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
D++ RA + LG+ + L D VRQ+A
Sbjct: 54 LKDEDAWVR----RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA-----------V 98
Query: 1878 TLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936
L +I + LI +L R A ALGE+ G+ + L + LKD
Sbjct: 99 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---ERAVEPLIKALKDED 151
Query: 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
RQ L E+ + + + R+ A
Sbjct: 152 GWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 38/227 (16%)
Query: 1913 VRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972
P + + + L+D S R+ L ++ + + +
Sbjct: 4 SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIK 52
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILS 2030
AL D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 53 ALKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI-- 103
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDV 2090
+ ++ L A AL E+ + L+ A+ D+D V
Sbjct: 104 -GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWV 154
Query: 2091 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
+ A +A + E G E + + + K R+ + +
Sbjct: 155 RQSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT-KYS 1556
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 65
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
D L D ++ L+ + L++ ++ AA +G +
Sbjct: 66 ADAL-----GQIGDERAVEPLI----KALKDEDGWVRQSAAVALGQIGDERA-------- 108
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676
+ + K L D VR AA A+G + V L+ ALK ++ V R
Sbjct: 109 ----VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGWV-RQ 156
Query: 1677 GAAQGLSEV 1685
AA L E+
Sbjct: 157 SAADALGEI 165
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 1e-11
Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 20/223 (8%)
Query: 2331 SSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390
SS + G A T + + I K + A S
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGE 70
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSV 2450
+ + D VR+ A + G +S+ L+ ++ +W +
Sbjct: 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYLSK-----DKEILIFMRDEVSKDNNWRVQEVLA 125
Query: 2451 LVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPAN 2510
F F + + L + LK R A+T+ L N
Sbjct: 126 KAFDEFCKK--------IEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKEN 175
Query: 2511 TTVVVDILASVVSALHDDSSE-VRRRALSALKSVAKANPSAIM 2552
+ +A L +D SE VR+ +AL+ ++K P +
Sbjct: 176 PNEAIRRIA----DLKEDVSEYVRKSVGNALRDISKKFPDLVK 214
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 4e-11
Identities = 83/697 (11%), Positives = 227/697 (32%), Gaps = 85/697 (12%)
Query: 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALG 1690
E+ + AI + I + + + + L+ + + ++ + + +
Sbjct: 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312
Query: 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI-LDGLADE 1749
E+ ++ H + F + ++ + G
Sbjct: 313 VALGENHSRALLDQVEHWQ--------------------SFLALVNMIMFCTGIPGHYPV 352
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
NE+ L + L + +L + R +L+ LL K
Sbjct: 353 NETTSSLTLTFWYTLQDD--------ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFP 404
Query: 1810 SGKALLEGGSDDEGASTEAHGR------AIIEVLGRDKRNEVLA----ALYMVRSDVSLS 1859
S + SD++ + E+LG + + + L S
Sbjct: 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQ 464
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
+A L+ +++I +++P L+ LI ++ S+ + +G L L +
Sbjct: 465 HTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH 523
Query: 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
++ S++P++ L +P S + + + K L + ++ + L
Sbjct: 524 PVMINSVLPLVLHALGNPELSVSSVSTL---KKICRECKYDLPPYAANIVAVSQDVLMKQ 580
Query: 1978 I------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE---DDQTSDTALDGLKQI 2028
I + + ++ G S L ++ + ++ + LE ++ + + + I
Sbjct: 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI 640
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
L + + + + + ++ +LS +D
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700
Query: 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148
V+++ ++V ++D+ +V +L + +G ++I ++
Sbjct: 701 VVEAVCAIFEKSVKTLLDD--FAPMVPQLCEMLGRMYSTIPQA----------------- 741
Query: 2149 DEAPNMISTLIVLLSDSDST--TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
A ++ L+ + + + + A + ++ V ++ ++ + ++ +
Sbjct: 742 -SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800
Query: 2207 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSL 2265
+RK P L C ++ + + L A + + EL+ E +S+
Sbjct: 801 LKRK----PDLF--LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESV 854
Query: 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302
+ V L+ + + Q +++ + I+
Sbjct: 855 GKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFA 891
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 22/222 (9%), Positives = 75/222 (33%), Gaps = 14/222 (6%)
Query: 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLPKIVPKLTEVLT-DTHPKVQ 1516
+ + W+ + +++ ++L SQ ++ ++ D + +
Sbjct: 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78
Query: 1517 SAGQTALQQVGSVIKNPEIAS-----LVPTLLMGLTDPNDHTKYSLDILLQTTFVN---T 1568
+ +++ + +K P + + LL + ++ L T
Sbjct: 79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKK 1626
+ ++ + ++ ++ + + + Q+ + + ++P V +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198
Query: 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
++ D P +R++ + LI+ G F + L + +
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 18/177 (10%)
Query: 1620 LLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNV 1673
LL ++ D + ++AA+++ + + F + + LLD K +V
Sbjct: 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSV 120
Query: 1674 ERSGAAQGLSEVL----AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL----PR 1725
+ L + + E +L DI+ + H+ +R LF
Sbjct: 121 -IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ +V+P ++ + D ++R + + + +E
Sbjct: 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES---FAILIKIFGMNTFVKTLEH 233
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 1343 LDQLMKSDKYGERRGA----AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ + S K+ +R A + K +S + + + +
Sbjct: 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80
Query: 1399 ALLAFECLCEKLGR--LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456
A + E +C+KL + YV + LL ++ +V EA A +
Sbjct: 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140
Query: 1457 KL----VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----QCLPKIVPKLTEVL 1508
+L +L+ ++ K + + QL A S ++VP + +++
Sbjct: 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 1509 TDTHPKVQSAGQTAL 1523
DT P +++ G +
Sbjct: 201 NDTQPAIRTIGFESF 215
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+++ D ++ A + I K+ + ++ L+ + +A
Sbjct: 68 IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKA 127
Query: 1909 LGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLS 1961
L + + ++ + +K + R + M +
Sbjct: 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187
Query: 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008
DE++P + + D+ +R +F+ L K GM + + L
Sbjct: 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 7/162 (4%)
Query: 2424 DGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLK 2482
++LL + + + A + + + L K
Sbjct: 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTK 114
Query: 2483 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS---- 2538
++K + EA KAL L + + A++ D+L ++ + + ++R
Sbjct: 115 EKKPSVIEAIRKAL--LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172
Query: 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
++K + P + + + D +R
Sbjct: 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES 214
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 9e-11
Identities = 65/328 (19%), Positives = 111/328 (33%), Gaps = 28/328 (8%)
Query: 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR----R 1940
+M + +SS + + LG + G + I+
Sbjct: 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454
Query: 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF-KSAGMQ 1999
G +G+ G + + S E+ ++ L + E+A L + +
Sbjct: 455 HGASLGI-------GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507
Query: 2000 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL-PLSAFNAHALG 2058
AI ++ + T A+ GL I R I L L +
Sbjct: 508 AIHDMFTYSQETQHGNITRGLAV-GLALINYGRQELADDLITKMLASDESLLRYGGAFTI 566
Query: 2059 ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118
ALA AG G N + L A+ D + DV+ A A V L+ D V +V L
Sbjct: 567 ALAY-AGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFV-LLRDYTTVPRIVQLLS 621
Query: 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
K + A +R +A+ +G L + I L L D AA ALS
Sbjct: 622 K---SHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALS 672
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSRDK 2206
++ +++ P + ++ +S +K
Sbjct: 673 MILIQQTEKLNPQVADINKNFLSVITNK 700
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-07
Identities = 70/424 (16%), Positives = 130/424 (30%), Gaps = 75/424 (17%)
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168
S + L +G Q + ++ +G +K + + E +++ + S
Sbjct: 355 TDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGN----LLEGKKVMAPYLPGSRASSRF 410
Query: 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF-CLPKAL 2227
+ L + A ++ +I + TS D++ G L G + A
Sbjct: 411 IKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470
Query: 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 2287
+ + L + SA E AALG+G L + + + + +
Sbjct: 471 IEVYEALKEVLYNDSATSGEAAALGMG-LCMLGTGKP------EAIHDMFTYSQET---- 519
Query: 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSA-ALALGKLSALSTR 2346
R A LAL
Sbjct: 520 ------------------------------------QHGNITRGLAVGLALINYGR-QEL 542
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
D L+ +L ++ +R + L +AG +SAVK +L V +D
Sbjct: 543 ADDLITKML---ASDESLLRYGGAFTI--ALAYAGTGNNSAVK----RLLHVAVSDSNDD 593
Query: 2407 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
VR +A LG + + + + L+ S + R G+
Sbjct: 594 VRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--- 646
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
S +D L KD +R+A+ AL +L+ Q + + SV++ H
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701
Query: 2527 DDSS 2530
+
Sbjct: 702 QEGL 705
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-06
Identities = 53/374 (14%), Positives = 101/374 (27%), Gaps = 52/374 (13%)
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
G ++ LP L + A LG + + + K P +
Sbjct: 353 GTTDNSFIKANLPW----LGKAQNWAKFTATASLGVIHKGNLLEGKKVMA-----PYLPG 403
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
+ ++ I G + + + A+L +G
Sbjct: 404 SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG- 462
Query: 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399
L+A+ + + L L A EA + G+ + + YS
Sbjct: 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGM-GLCMLGTGKPEAIHDMFTYSQETQ- 520
Query: 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRH 2459
+ R A + I E AD L + + +S R+G A
Sbjct: 521 ---HGNITRGLAVGLALINYGRQEL---ADDL--ITKMLASDESLLRYGGAFTIALAYAG 572
Query: 2460 NPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALG-----------RLLLHQIQSGP 2508
+ ++ L ++ D +R A+ ALG R++ +S
Sbjct: 573 TGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHN 625
Query: 2509 ANTTVVV--------------DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
A+ + + D VR+ A+ AL + +
Sbjct: 626 AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685
Query: 2555 VALFGPALAECLKD 2568
VA + +
Sbjct: 686 VADINKNFLSVITN 699
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-10
Identities = 76/480 (15%), Positives = 160/480 (33%), Gaps = 99/480 (20%)
Query: 2092 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151
++ A+ + + GV + S++++ + + S+ +DE
Sbjct: 2 AMGFHEAQINNMEMAPGGV--ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEV 59
Query: 2152 ---PNMISTLIVLLSDSDSTTV--AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
P +++ + L ++ T+ +AW L+ + + +++ A
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAW-VLTNIASG-----NSLQTRIVIQA------- 106
Query: 2207 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-- 2264
+PIF++ L S +++EQA LG + ++
Sbjct: 107 ----------------------GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 2265 -LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG-----IALKPFLPQLQTTF 2318
L ++P PL+++ + + + LS + R + P L L
Sbjct: 145 VLDCNILP---PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL---- 197
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
L S V + A AL LS +A++ A GV +
Sbjct: 198 SWLLFVSDTDVLADACWALSYLSD------------------GPNDKIQAVIDA--GVCR 237
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 2434
L +L+ H+D V A +G + + LQ L
Sbjct: 238 R----------------LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTK 2494
L+L SSP + + + + N + I + + +I L S L+ +F R+ +
Sbjct: 282 LHLLSSPKESIKKEACWTISNITAGNRAQI-QTVIDANIFPALISILQTAEFRTRKEAAW 340
Query: 2495 ALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
A+ V + + + L S++ + AL+ L+++ + +
Sbjct: 341 AITNATSGGSAEQ-IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 65/422 (15%), Positives = 130/422 (30%), Gaps = 73/422 (17%)
Query: 2058 GALAEVAGPGLNF---HLGTILPALLSAMGDDDMDVQSLA---------KEAAETVTLVI 2105
GA+ N G I ++ + + Q A KE + VI
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 2106 DEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLL 2162
G V V L + +++ SA+++ + + +V +A + I LL
Sbjct: 61 STPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELL 116
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQ-----------------PSYIKVIRDAIST--- 2202
S A AL + + + + R+A+
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176
Query: 2203 -SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261
R K + + P L + L ++ A L L + +
Sbjct: 177 LCRGKSPPPEFA------------KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224
Query: 2262 EQSLKEFVI--PITGPLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQL 2314
++ + VI + L+ ++ +V S L + I+ + I L L
Sbjct: 225 DK--IQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREA 2368
+ L +++ A + ++A + V D L+S LQ ++ R+
Sbjct: 282 ----LHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337
Query: 2369 ILTALKGVLKHAG-KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
A+ + + V++ L DL+ D + A + L + + E
Sbjct: 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397
Query: 2428 AD 2429
+
Sbjct: 398 RN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-08
Identities = 68/464 (14%), Positives = 147/464 (31%), Gaps = 98/464 (21%)
Query: 2004 IVPTLLHALEDDQTSD--TALDGLKQILS------VRTTAVLPHILPKLVHLPLSAFNAH 2055
I ++ + +A +++LS + P ++ + V N
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 2056 ----ALGALAEVAGPGLNFHL----GTILPALLSAMGDDDMDVQ--------SLAKEAAE 2099
+ L +A +P + + + DVQ ++A ++
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMIST 2157
V+D + L+ K N+ ++ R++ + + K+ +P ++
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAKVSP-CLNV 196
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
L LL SD+ +A A ALS + + I+ + DA
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLS-----DGPNDKIQAVIDA------------------ 233
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITG 2274
+ ++ L+ ++ A +G ++ Q+ L +
Sbjct: 234 -----------GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ--- 279
Query: 2275 PLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
L+ ++ K A T+S I + + P L I LQ +
Sbjct: 280 SLLHLLSSPKESIKKEACW-TISNITAGNRAQIQTVIDANIFPAL----ISILQTAEFRT 334
Query: 2330 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382
R AA A+ ++ + + L L V D+ I + L L+ +L+ +
Sbjct: 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394
Query: 2383 -SVSSAVKIRVYSV----------LKDLVYHDDDHVRVSAASIL 2415
+ + I Y ++ L H++ + A ++
Sbjct: 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 6e-06
Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 30/280 (10%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDP----------LVGDLLSSLQVSD-AGIRE 2367
I+ + + + SA KL LS +P +V + L+ + ++
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKL--LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF 83
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
L + ++ + +L+ + + V+ A LG ++ +
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 2428 ----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSS 2480
++L LL L S +V + R + + L++L L
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL--- 200
Query: 2481 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALS 2538
L + + AL L V+D + +V L + +V AL
Sbjct: 201 LFVSDTDVLADACWALSYLSDGP----NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 2539 ALKSVAKANPSAIMVHVALFG-PALAECLKDGSTPVRLAA 2577
A+ ++ + V + +L L ++ A
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-05
Identities = 69/397 (17%), Positives = 143/397 (36%), Gaps = 40/397 (10%)
Query: 1285 GALAKHLAKDD----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT--- 1337
GA+ H A+ + + +++++ + S Q + + L+ S + P
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLL-SKEPNPPIDEV 59
Query: 1338 -----LVSRLLDQLMKSDKYGERRGAAFGLAGVVKG--FGISSLKKYGIAATLREGLADR 1390
+V+R ++ L + + + +A+ L + G + + G E L
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSS 118
Query: 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---- 1443
+E A+ A + + YV+ + PLL + + + A A
Sbjct: 119 EFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
Query: 1444 ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVP 1502
R V L L L + L ++ ++ + +
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-K 1554
+L E+L KV S AL+ VG+++ +I S + +LL L+ P + K
Sbjct: 238 RLVELLMHNDYKVVSP---ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 1555 YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT-EPK 1611
+ + T N + A + P + L+ T+K+AA + N S + E
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
+ +G + P + +L ++ VA + +++R
Sbjct: 355 KYLVELGCIKP-LCDLLTVMDSKIVQVALNGLENILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 29/303 (9%)
Query: 1483 GAMAYCAPQQLSQCLPK---IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL- 1538
GAM + Q + + I + E++ P+ Q + +++ S NP I +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 1539 -----VPTL--LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERS 1589
V + + S +L N++ + A VPI L
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ +++A +GN+ T +D + +L P ++ + A A+ +L RG
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-----------TVYFEHIL 1698
VS L+ L S + L++ AL V +
Sbjct: 181 KSPPPEFAKVSPCLNVL----SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-VLPAILDGLADENESVRDAA 1757
++ H V L + +Q Q L L ++L L+ ES++ A
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
Query: 1758 LGA 1760
Sbjct: 297 CWT 299
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 55/372 (14%), Positives = 108/372 (29%), Gaps = 35/372 (9%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQV-AGR 1907
M+ S A K + + E++ ++ + L + Q +
Sbjct: 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87
Query: 1908 ALGELVRKLGERVLP----SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963
L + + +PI L ++ L + + +
Sbjct: 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 1964 DELIPTIRTALC-DSILEVRESAGLAFSTLFKS----AGMQAIDEIVPTLLHALE--DDQ 2016
++P + + L + +A A S L + + + L L D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 2017 TSDTALDGLKQILSV---RTTAVLPH-ILPKLVHL---PLSAFNAHALGALAE-VAGPGL 2068
A L + + AV+ + +LV L + AL A+ V G +
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Query: 2069 NFHLGT---ILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 2117
+ L +LL + ++ ++ + VID +L+S L
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
+ + YLV+ I L LL+ DS V A L
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL--GCIKPLCDLLTVMDSKIVQVALNGL 385
Query: 2178 SRVVASVPKEVQ 2189
++ +E +
Sbjct: 386 ENILRLGEQEAK 397
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 9e-09
Identities = 53/408 (12%), Positives = 129/408 (31%), Gaps = 67/408 (16%)
Query: 2076 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
+ ++ + ++++ Q L++E + +I + VS L K + +
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCS 115
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNM-ISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
I+ SA+ + + I I LL+ + A AL +
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175
Query: 2186 K---------------------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224
++ +R+ T + R K P+
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL-------- 227
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI--PITGPLIRIIGD 2282
A++ +LP ++ L E+ + + L + +E+ E V+ + L++++G
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER--IEMVVKKGVVPQLVKLLGA 285
Query: 2283 RFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
+ + L + I+ + + L L + ++ A +
Sbjct: 286 TEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF----PSLLTNPKTNIQKEATWTM 340
Query: 2338 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAG-KSVSSAVKI 2390
++A V + L+ L +D ++ A+ + + V
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DGQLADLLQEL 2434
+ L +L+ D + + + Q E +L+ +++E
Sbjct: 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 448
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 53/380 (13%), Positives = 124/380 (32%), Gaps = 37/380 (9%)
Query: 2230 LLPIFLQGLI-SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288
L+P F+ L + + ++ ++A L + TSEQ+ I ++
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 2289 KSAI--LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
+ A+ L ++ ++ K G A+ P L L + L + L
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACG---YLRNLTWTLSN 216
Query: 2340 L------SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 2393
L + V+ ++ L+ L +D + A+ + + + VK V
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPSWAARHGS 2449
L L+ + + A +G + ++ A L +L ++P + +
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 2450 VLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509
+ I + ++ L L F ++ + A+
Sbjct: 337 TWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG---GTVE 392
Query: 2510 NTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKA-------NPSAIMVHVALFGP 2560
+V I+ +++ L +++ + L A+ ++ +A +IM+
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452
Query: 2561 ALAECLKDGSTPVRLAAERC 2580
+ + + V A+
Sbjct: 453 KIEALQRHENESVYKASLNL 472
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 61/403 (15%), Positives = 120/403 (29%), Gaps = 58/403 (14%)
Query: 2076 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
LP + + DDM Q L++E + +VI V LV + + +
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPE 145
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA--AAWEALSRVVASV 2184
++ +A+ + + L + L + S V A W AL V
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW-ALGNVAGDS 204
Query: 2185 P----------------KEVQPSYIKVIRDAIST----SRDKERRKKKGGPILIPGFCLP 2224
+ +IR A T R K+ +
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD------------W 252
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ LP + + S E A + L + E + I L+ ++
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
V++ L + I+ + + + + L ++ A + ++A
Sbjct: 313 T-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 2344 STRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKS---VSSAVKIRVYS 2394
+T V D L+ L+V++ ++ A+ + + V
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 2395 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437
L DL+ D+ + L + + E + A L N
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 474
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 1e-08
Identities = 63/472 (13%), Positives = 149/472 (31%), Gaps = 106/472 (22%)
Query: 2000 AIDEIVPTLLHALEDDQTSD--TALDGLKQILSVRT-----TAVLPHILPKLVHLPLSAF 2052
+ + +P + L D + +A +QILS + ++P+LV
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 2053 NA----HALGALAEVAGPGLNFHLGTI-----LPALLSAMGDDDMDVQ--------SLAK 2095
A AL +A G + + +P + + ++V+ ++A
Sbjct: 144 PEMLQLEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202
Query: 2096 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPN 2153
++ + V+ +E ++ N+ S+ R++ + + K + +
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ- 257
Query: 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 2213
+ TL L+ D+ T+ A A+S + ++ +
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDG-------------------PQEAIQAVIDV 298
Query: 2214 GPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273
+ ++ L S ++ A +G ++ Q+ +
Sbjct: 299 R---------------IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 2274 GPLIRIIGDRFPWQVKSA--ILSTLS--------IIIRKGGIALKPFLPQLQTTFIKCLQ 2323
L ++ K A +S ++ +I I +K L+
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP----------LVKLLE 393
Query: 2324 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS---------LQVSDAGIREAILTALK 2374
+ + A A+ S+ + ++ L+S L+++D I E L AL+
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453
Query: 2375 GVLKHAGKSVSSAVKIRVYSV-----------LKDLVYHDDDHVRVSAASIL 2415
+LK + + + + +++D + A I+
Sbjct: 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 66/383 (17%), Positives = 143/383 (37%), Gaps = 32/383 (8%)
Query: 1293 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT-------LVSRLLDQ 1345
+ ++ + ++ LN+ Q + + ++ S + P +V RL++
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL-SREHRPPIDVVIQAGVVPRLVEF 138
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
+ ++ + AA+ L + G + + L + + + A+ A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ-AIWAL 197
Query: 1404 ECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---ARAMMSQLSAQGVK 1457
+ + YV+Q M P+L + S++ +R A R Q V
Sbjct: 198 GNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
LP+L K + T + + ++ + +I +L E+L+ VQ
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316
Query: 1517 SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTV 1569
+ A+ + V N A ++P L + L+ P ++ K + + T NT
Sbjct: 317 TPALRAVGNI--VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 1570 DAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVK 1625
++ A L+P + + L +TKK+A + N S + D+I Y+ + +
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR 1648
+L + V A+ ++++
Sbjct: 435 DLLEIADNRIIEVTLDALENILK 457
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 5e-04
Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 27/266 (10%)
Query: 1284 TGALAKHLAKDDPKV------HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
AL +A D ++ +L + N+ ++ R + LS L + + +
Sbjct: 194 IWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 1338 LVSR----LLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSLKKYGIAATLREGLADRN 1391
V L +L+ S A + ++ + G I ++ I L E L
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSHE 311
Query: 1392 SAKRREGALLAFECLC----EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447
S + AL A + + + V+ L LLL + + + +EA +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNIT 369
Query: 1448 MS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL----PKI 1500
Q+ A ++P L+K LE ++TK+ + + + Q+
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQV 1526
+ L ++L ++ AL+ +
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-04
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 2426 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 2485
QL L ++ +S + + + F L + ++ RL +++ +
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 2486 FP-LREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKS 2542
L+ + AL + A T VVVD + + L+ S EV+ +A+ AL +
Sbjct: 144 PEMLQLEAAWALTNIASGT----SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 2543 VAKANPS---AIMVHVALFGPALAECLKDGSTPVRLAA 2577
VA + ++ A+ + + A
Sbjct: 200 VAGDSTDYRDYVLQCNAM--EPILGLFNSNKPSLIRTA 235
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 55/354 (15%), Positives = 104/354 (29%), Gaps = 127/354 (35%)
Query: 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSS 2132
G+ LP + + DDM Q A S++L + ++ +
Sbjct: 11 GSELPQMTQQLNSDDMQEQ---LSATRKF-------------SQILSDGNEQIQAVIDAG 54
Query: 2133 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192
A + L+ LLS + + A ALS + + +++Q
Sbjct: 55 A---------------------LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--- 90
Query: 2193 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALG 2252
+ DA G LP +Q L S + ++ ++A
Sbjct: 91 --AVIDA-------------GA----------------LPALVQLLSSPNEQILQEALWA 119
Query: 2253 LGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312
L + +EQ + +I G + P L
Sbjct: 120 LSNIASGGNEQ--------------------------------IQAVIDAGAL---PAL- 143
Query: 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSD 2362
++ L + A AL +++ + LV LLSS +
Sbjct: 144 ------VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSS---PN 193
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416
I + L AL + + + + L+ L H+++ ++ A L
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 36/235 (15%)
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 2287
LP Q L S + + A +++ +EQ + +P L++++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 2288 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 2338 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+++ V D L+ L + I + L AL + + + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPS 2442
L L+ ++ + A L ++ + + A L++L L S +
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 40/212 (18%)
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 2287
LP +Q L S + + A L ++ +EQ + +P L++++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 2288 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 2338 GKLSALSTR----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387
+++ + LV LLSS + I + L AL + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALV-QLLSS---PNEQILQEALWALSNIASGGNEQKQAV 176
Query: 2388 VKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
+ L+ L H+++ ++ A L +
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 5e-06
Identities = 47/267 (17%), Positives = 81/267 (30%), Gaps = 33/267 (12%)
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 2279
+ + LQ ++ S LR A + L L K + + G L+
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN--KATLCSMKGCMRALVAQ 251
Query: 2280 IGDRFPWQVKSAI-----LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRT-VRSSA 2333
+ + LS + + K + + L ++C + + S
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKSV 307
Query: 2334 ALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367
Query: 2383 SVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQLA----DLLQELL 2435
+ +R + L+ L+ + +A L +S Q A + L
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427
Query: 2436 NLASSPSWAARHGSVLVFATFLRHNPS 2462
NL S GS + + P+
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 5e-06
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626
N D L+ + +V R L +A + +AAQ++G V ++ + +G L ++
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 1627 VLVDPIPEVRSVAARAIGSLIRG--MGEENFPDL--VSWLLDALKSDNSNVERSGAAQGL 1682
+ D VR A AI L+R G F L S L+ A++ + + +A L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL-KVKSAFLL 191
Query: 1683 SEVLA----ALGTVYFEHILPDIIRNCSHQRASVRD 1714
+L GT+ ++ ++ + + +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 25/217 (11%)
Query: 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289
+ + + L +G+A LR +AA +G + + + + L+R++ V+
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 2290 SAILSTLSIIIRKGGIALKPF-----LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
L +S ++R+ L F L ++ +Q + ++ +A L L
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVL----MRAMQQQVQKLKVKSAFLLQNLLVGH 198
Query: 2345 TRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398
+ L++ ++ + E +L AL ++ + V + + L++
Sbjct: 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEE 256
Query: 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL 2435
L+ H +L + E+ + + L +
Sbjct: 257 LLRHRC--------QLLQQHEEYQEELEFCEKLLQTC 285
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 6e-06
Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 35/268 (13%)
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 2279
+ + LQ ++ S LR A + L L + + K + + G L+
Sbjct: 78 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQ 135
Query: 2280 IGDRFPWQVKSAILSTLSIIIR------KGGIALKPFLPQLQTTFIKCLQDSTR-TVRSS 2332
+ ++ I S L + K + + L ++C + + + S
Sbjct: 136 LKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKS 190
Query: 2333 AALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250
Query: 2382 KSVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 2434
+ +R + L+ L+ + +A L +S Q + L
Sbjct: 251 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPS 2462
NL S GS + + P+
Sbjct: 311 KNLIHSKHKMIAMGSAAALRNLMANRPA 338
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-06
Identities = 87/762 (11%), Positives = 221/762 (29%), Gaps = 126/762 (16%)
Query: 1896 SSSSERRQVAGRALGELVRKLG--ERVLPS-IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
++ ++R+ A L L ++ E + I ++ K + L +
Sbjct: 19 ATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALC 78
Query: 1953 SAGKSQLLSFMDEL-IPTIRTALCDSILEVRESAGLAFSTLFKS-AGMQAIDEIVPTLLH 2010
+ + EL +P L +A T+ + +G++ + P
Sbjct: 79 ENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKEL 138
Query: 2011 ALEDDQTSDTALDGLKQILSVRT----------TAVLPHILPKLVHLPLSAFNAHALGAL 2060
+++ DT L L ++ RT + ++ + L L
Sbjct: 139 CTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRL 198
Query: 2061 AEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120
+V ++ + + S+ + + + + + ++ + + L
Sbjct: 199 LDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLA 258
Query: 2121 VG--DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
+A L G +++ + ++ ++ + + D A E L
Sbjct: 259 PDMESKVRVTVAITALLNGPLDVGNQVVARE---GILQMILAMATTDDELQQRVACECLI 315
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL 2238
+ S K++ K L + +L
Sbjct: 316 ----------------------AASSKKDKAK-----------ALCEQGVDILKRLYH-- 340
Query: 2239 ISGSAELREQAALGLGEL---------IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289
S + +R +A +GL +L I + + + LI+ D+ +
Sbjct: 341 -SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399
Query: 2290 SAILSTLSI--IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV 2347
+ L+ L++ ++ I K + L + + ++ L +
Sbjct: 400 ADGLAYLTLDAECKEKLIEDKASIHAL----MDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455
Query: 2348 DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 2407
+ L +++ + + I E + K ++ + + L L + +
Sbjct: 456 EMLP-EMIELAKFAKQHIPE---EHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511
Query: 2408 RVSAASILGIMSQCMED-GQLADL--LQELLNLASSPSWAARHGSVLVFATFLRHNPSAI 2464
+ A +L + E G++ ++ LL +A + + + A +
Sbjct: 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571
Query: 2465 SMS--------PLFLSIL------------------------------------DRLKSS 2480
S S L++L +++
Sbjct: 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631
Query: 2481 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 2540
L ++ L A+ + L L++ + D + + D+ E AL
Sbjct: 632 LMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689
Query: 2541 KSVAKANPSA--IMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ + ++ +A + L + + S V+
Sbjct: 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 32/150 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
L P + + +R + L + + PL+ + +
Sbjct: 11 SSGLVPRG----SHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE 54
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W+++ A + G + + L IK L+D + VRS AA +L ++
Sbjct: 55 D-WRIRGAAAWII------GNFQDERAVEPL----IKLLEDDSGFVRSGAARSLEQIG-- 101
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
RV + L + R+ + L
Sbjct: 102 GERVRAAMEKLAET---GTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
++ L + +R +AA +G V+PL+ L+ +R +L +
Sbjct: 48 LESLSNEDWRIRGAAAWIIGNFQDERA-VEPLI----KLLEDDSGFVRSGAARSL-EQIG 101
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416
RV + ++ L R A + L
Sbjct: 102 GE----------RVRAAMEKLAETGTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVR 2533
+ L SL +E + +R A+ +G Q A V+ L + L DDS VR
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWIIG-----NFQDERA-----VEPL---IKLLEDDSGFVR 90
Query: 2534 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
A +L+ + A+ + + G+ R A
Sbjct: 91 SGAARSLEQI--GGERVR--------AAMEKLAETGTGFARKVAVN 126
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 64/180 (35%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
L + D VR + A+ MG+E F L+ ++L +++ + R AA
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSR----MGDEAFEPLL----ESLSNEDWRI-RGAAA- 63
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
++ ++ +
Sbjct: 64 ---WIIGNFQD--------------------------------------------ERAVE 76
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L D++ VR A + L + + E R+ +V L
Sbjct: 77 PLIKLLEDDSGFVRSGAARS---LEQIGGERVRAAMEKLAET----GTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 33/147 (22%)
Query: 2396 LKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFAT 2455
+ ++ VR ++ L M + + LL S+ W R + +
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGD--------EAFEPLLESLSNEDWRIRGAAAWIIGN 68
Query: 2456 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515
F + A+ + L L+D+ +R + ++L ++ V
Sbjct: 69 F--QDERAV----------EPLIKLLEDDSGFVRSGAARSLEQI----------GGERVR 106
Query: 2516 DILASVVSALHDDSSEVRRRALSALKS 2542
+ + R+ A++ L++
Sbjct: 107 AAM---EKLAETGTGFARKVAVNYLET 130
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 29/141 (20%)
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
+AD N RR+ A L R+ + LL + S++ +R AA
Sbjct: 17 RGSHMADENKWVRRD-VSTA-------LSRMGDEAF----EPLLESLSNEDWRIRGAA-- 62
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
A + + + L+K LED + + + + L + ++
Sbjct: 63 -AWI----IGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRA 107
Query: 1503 KLTEVLTDTHPKVQSAGQTAL 1523
+ ++ + L
Sbjct: 108 AMEKLAETGTGFARKVAVNYL 128
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-05
Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 42/353 (11%)
Query: 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142
+ VQ LA T+ + E L E+ K + + + +R+ +A + +
Sbjct: 116 LNHSTQFVQGLA---LCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172
Query: 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202
+ + LL++ + + + L+ + P ++ + K++ +
Sbjct: 173 VP----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP-DMLAHFRKLVPQLVRI 227
Query: 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
++ + G P +L L+ L + E L ++ T
Sbjct: 228 LKNLIMSGYS-PEHDVSGISDPFLQVRIL-RLLRILGRNDDDSSEAMNDILAQVATNTET 285
Query: 2263 QS------LKEFVIPITG------------PLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304
L E V+ I ++ ++ L++L ++
Sbjct: 286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH 345
Query: 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--STRVDPLVGDLLSSLQVSD 2362
A++ ++T + CL+D +++ A+ AL + ++ +LL L +
Sbjct: 346 NAVQRH----RSTIVDCLKDLDVSIKR---RAMELSFALVNGNNIRGMMKELLYFLDSCE 398
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASIL 2415
+ + + A K S + ++ +VR A L
Sbjct: 399 PEFKADCASG---IFLAAEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNL 446
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-04
Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 13/254 (5%)
Query: 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS---TRVDPLVGDLLSSLQ 2359
G I + L KCL+D VR +AA+ + KL ++ + L +
Sbjct: 111 GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
S+ + + AL + + S + + + L + + ++ L +
Sbjct: 171 DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN 230
Query: 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+D + + + + S + A +V V FL P + L L
Sbjct: 231 P-KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289
Query: 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSA 2539
+L + ++ + + + ++ + ++ V ++D V+ L
Sbjct: 290 TLLSGEPEVQYVALRNINLIVQKR--------PEILKQEIKVFFVKYNDPIYVKLEKLDI 341
Query: 2540 LKSVA-KANPSAIM 2552
+ +A +AN + ++
Sbjct: 342 MIRLASQANIAQVL 355
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-04
Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 23/250 (9%)
Query: 2317 TFIKCLQDSTRTVRSSAALALGKLSALSTR--VDPLVGDLLSSLQVSDAGIR-EAILTAL 2373
+F+K +D +R ALA+ + + + L L L+ D +R A +
Sbjct: 90 SFVKDCEDPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 146
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL--- 2430
K + + V + L+DL+ + V +A + L +S+ + L DL
Sbjct: 147 K-LHDINAQMVEDQGFL---DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202
Query: 2431 -LQELLNLASSPS-WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPL 2488
+ +LL + + W G + + +NP SI +R+ L +
Sbjct: 203 NINKLLTALNECTEW----GQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAV 255
Query: 2489 REASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548
++ K L L + +++ LA + L EV+ AL + + + P
Sbjct: 256 VLSAVKVL-MKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRP 314
Query: 2549 SAIMVHVALF 2558
+ + +F
Sbjct: 315 EILKQEIKVF 324
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-04
Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 28/246 (11%)
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ L + SS + D R + ALK + K V + VL+ D +
Sbjct: 23 IQKLCDRVASSTLLDD---RRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQT-DRSDSEI 78
Query: 2407 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
+ + ++ I+S E+ + ++ +L F +
Sbjct: 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLG------------SQFTEIFIKQQENV-- 124
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
L LS+L+ + F +R K L LL V ++ ++ L
Sbjct: 125 -TLLLSLLE-------EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176
Query: 2527 DDSSEVRRRALSALKSVAKANPS--AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 2584
D +R + L+++ ++N + I+ F L ++G++ + E C +
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 2585 FQLTRG 2590
L +
Sbjct: 237 QNLLKN 242
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2612 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.89 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.86 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.84 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.84 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.82 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.79 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.78 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.77 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.76 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.75 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.73 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.72 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.72 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.71 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.71 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.69 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.64 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.63 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.63 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.61 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.6 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.6 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.57 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.56 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.55 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.54 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.54 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.54 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.52 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.52 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.52 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.52 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.51 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.51 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.5 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.49 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.41 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.37 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.36 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.36 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.35 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.34 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.33 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.32 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.17 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.15 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.12 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.11 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.08 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.0 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.97 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.94 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.92 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.91 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.83 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.82 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.8 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.79 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.78 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.78 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.78 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.78 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.74 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.74 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.7 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.69 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.65 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.57 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.55 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.55 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.53 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.51 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.51 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.5 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.48 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.43 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.42 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.37 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.34 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.18 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.13 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.12 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.08 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.05 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.02 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.84 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.72 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.35 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.26 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.24 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 97.24 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.15 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 97.14 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.05 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.97 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 96.79 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.53 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.22 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 95.81 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 94.67 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 94.52 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 91.85 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 91.49 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 91.37 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 90.06 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 89.67 | |
| 3jxy_A | 232 | Alkylpurine DNA glycosylase ALKD; heat repeat, DNA | 86.41 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 85.42 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 84.5 | |
| 3s4w_B | 1323 | Protein FACD2, fanconi anemia group D2 protein hom | 84.05 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 83.07 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 82.01 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 80.27 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=585.86 Aligned_cols=997 Identities=17% Similarity=0.189 Sum_probs=749.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
.-++.++..+.++++++|..|...+...... +.+...+.+++.+++.+.+++|.+|..|+.+|+.++...+. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3477888889999999999987777655431 22234578899999999999999999999999999987665 4
Q ss_pred hhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHh
Q 000051 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2612)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~ 1575 (2612)
+++.+++.++..+.|+++.||.+|+.+|+.++..++.+.. +. ......++
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~~------------------~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------GS------------------ALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------C------------------CTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------cc------------------chHHHHHH
Confidence 5688999999999999999999999999999887653210 00 00112345
Q ss_pred hHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000051 1576 LLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2612)
Q Consensus 1576 ~iip~L~~~l~-d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~ 1654 (2612)
.++|.+.+.+. +.++.+|..+..+++.++...+ +.+.+|++.+++.+...+.++++.||..|..+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 67788888887 4778999999999999998643 47889999999999999999999999999999999999988888
Q ss_pred chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch
Q 000051 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f 1731 (2612)
++.+++.+++.+.++.+...|..++++++.++...|.. +++.++|.+++.+.+.++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 88999999999877654446788899999999988864 457889999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHhhcCCC-------------------------------------ChhHHHHHHHHHHHHHHHhhh---c
Q 000051 1732 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1771 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~-------------------------------------~~~VR~~Al~al~~lv~~~~~---~ 1771 (2612)
.||++.++|.++..+.++ ...+|.+|..++..++..++. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999887521 013688888888887765543 2
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch-HHHHHHHHHHhChhhHHHHHHHHH
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST-EAHGRAIIEVLGRDKRNEVLAALY 1850 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~-~~~~~~l~~~Lg~~~~~~vl~~L~ 1850 (2612)
.++.++|.+...+.|.++.+|..++..++.++...+...+. . ........ +.....+. ...+.+++.+.
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~-----~~l~~ll~~l~ 440 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW--L---CDPDAMEQGETPLTMLQ-----SQVPNIVKALH 440 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----------------CCCHHHHHH-----HHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc--c---cCccccccccchHHHHH-----HHhhHHHHHHH
Confidence 45567888888888888899999999988887654321100 0 00000000 00001111 12345666666
Q ss_pred HHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhchh----hhhhH
Q 000051 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPSI 1924 (2612)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~--~~R~~A~~aL~~lv~~~~~~----~l~~l 1924 (2612)
..+.|.++.+|.+++..++.++...+..+.++++.+++.+...+.++++ .+|..++..++.++...|+. +++.+
T Consensus 441 ~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l 520 (1230)
T 1u6g_C 441 KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 520 (1230)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH
Confidence 6788999999999999999999988877788999999999999998764 89999999999998877665 56789
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh------hhHHHhHhHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHh
Q 000051 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSA 1996 (2612)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~D~d~~Vr~~A~~al~~l~~~~ 1996 (2612)
+|.+...+.++++.+|..++.+++.++...+. ..+.+|++.++|.+...+ .|.++++|..|..+++.+....
T Consensus 521 lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 521 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877654 366789999999999999 7889999999999999999988
Q ss_pred Chhh---hhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHh-CCChhhhH
Q 000051 1997 GMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHL 2072 (2612)
Q Consensus 1997 g~~~---~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~-g~~l~~~l 2072 (2612)
|... +..++|.+.+.+.++..+..++ ++++.++... +.++.+++
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~e~~r~~~~--------------------------------~al~~i~~~~~~~~~~~~~ 648 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKNEITRLTTV--------------------------------KALTLIAGSPLKIDLRPVL 648 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTSSSHHHHHH--------------------------------HHHHHHTTCSSCCCCHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccchhHHHHH--------------------------------HHHHHHHhCccccchHHHH
Confidence 7642 2444555555554443322222 3333333211 23578999
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh
Q 000051 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2612)
Q Consensus 2073 ~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~ 2148 (2612)
+.++|.+.+.+.++++.+|..++.+++.++...+. +.+.+++..++..+.++|+.++..+..++..+++..+..+.
T Consensus 649 ~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~ 728 (1230)
T 1u6g_C 649 GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 728 (1230)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHH
Confidence 99999999999999999999999999999987753 34555555555667788999999999999999988777777
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCch
Q 000051 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2612)
Q Consensus 2149 ~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~ 2228 (2612)
++.+.+++.++..+.++. ++..+..++..+.+.. .. . + ++ +....
T Consensus 729 ~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l---------------~~-~---------~-----~~---~~~~~ 773 (1230)
T 1u6g_C 729 KISGSILNELIGLVRSPL--LQGGALSAMLDFFQAL---------------VV-T---------G-----TN---NLGYM 773 (1230)
T ss_dssp GTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHH---------------HT-T---------C-----CT---TCSHH
T ss_pred HhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHH---------------Hh-c---------C-----CC---CCCHH
Confidence 788888898888886543 1111222222222110 00 0 0 00 11222
Q ss_pred hhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHHh
Q 000051 2229 PLLPIFLQGLIS-----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2229 ~ilp~l~~~L~~-----~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~-~~~~~vk~~al~~L~~L~~~ 2302 (2612)
.+++.+.+.+.. .....+..++.+++.++...++ .....+..+ +..+.+ ......+..++.+++.++..
T Consensus 774 ~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~~ 848 (1230)
T 1u6g_C 774 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGHH 848 (1230)
T ss_dssp HHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHHH----HHHhCCCCccHHHHHHHHHHHHHhccc
Confidence 333333322211 1334577899999999988873 223333332 333332 23567788888999998776
Q ss_pred cCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCC
Q 000051 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2612)
.+ +.+ .|+++++|++++.|+++.||.+|+.+||.++. ++++.++|.+++.+.+. ++.|+.++++|++++...+.
T Consensus 849 ~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~ 922 (1230)
T 1u6g_C 849 ID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASV 922 (1230)
T ss_dssp SC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCS
T ss_pred CC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCCh
Confidence 44 344 48899999999999999999999999999975 56788999999999754 56799999999999998766
Q ss_pred CcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCc
Q 000051 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462 (2612)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~ 2462 (2612)
....++.+.|+..|...+.+.++.+|..+++|+|.++...++ ++++.+
T Consensus 923 ~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~----~l~p~l---------------------------- 970 (1230)
T 1u6g_C 923 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----TLLPRL---------------------------- 970 (1230)
T ss_dssp TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----GTHHHH----------------------------
T ss_pred hhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH----HHHHHH----------------------------
Confidence 666899999999999999888889999999999999987653 122222
Q ss_pred cccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000051 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS 2542 (2612)
Q Consensus 2463 ~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~ 2542 (2612)
.+.+.++++.+|..++.++++++...+ +..+.++..+++.++.+++|++.+||++|+.++++
T Consensus 971 ---------------~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 971 ---------------KGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp ---------------TTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred ---------------HHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 223344455566666666666554432 12234567788888899999999999999999999
Q ss_pred HHhhCchhhhhhHhHHHHHHHhhhcC------------------CcchhhhhHHHHHHHHhcccc
Q 000051 2543 VAKANPSAIMVHVALFGPALAECLKD------------------GSTPVRLAAERCAVHAFQLTR 2589 (2612)
Q Consensus 2543 ~a~~~~~~v~~~l~~l~p~l~~~~~~------------------~~~~vk~aae~~~~~~~~~~~ 2589 (2612)
++|++|+.+.++++.++|.||++++. .+..+|.+|..|+..+++...
T Consensus 1033 ~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~ 1097 (1230)
T 1u6g_C 1033 AAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCL 1097 (1230)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999854 445899999999999998763
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=574.49 Aligned_cols=1071 Identities=16% Similarity=0.179 Sum_probs=785.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcch--hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~--l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
.+..+++.+.+. |...|+.|...|....+...... .....+++.+.+.+.++ +|.+|.+|+.+++.+++.++.
T Consensus 7 ~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 7 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH---
Confidence 345666665544 46788888877776654321111 11125777788888876 899999999999999987764
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---------hHHhHHHHHHhhhc-CCChhhHHHHHHHHHHH
Q 000051 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAM 1485 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---------~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~i 1485 (2612)
+++..+++.++..+.|+++.||.++..+++.++..+++. .++.++|.+++.+. +++|..|.+++.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999988765 47899999999998 58899999999999999
Q ss_pred HhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCC-hhHH-HHHHHHHhc
Q 000051 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQT 1563 (2612)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~-~~~r-~al~~L~~~ 1563 (2612)
+...++.+.++++.+++.++..+.|+++.||..|+.+++.++...++..+..++|.+++.+.+++ ...| .+++.+...
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 98888888889999999999999999999999999999999998876666777888877775432 2233 344433321
Q ss_pred -cccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-------------
Q 000051 1564 -TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------- 1629 (2612)
Q Consensus 1564 -~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~------------- 1629 (2612)
......-.+++..++|.+.+.+.+.++++|..+..+++.++...+ +++.||++.++|.+...+.
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 111122235778899999999999999999999999999998654 5789999999999877663
Q ss_pred ------------------------CCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhccCCCHHHHHHHHHHH
Q 000051 1630 ------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2612)
Q Consensus 1630 ------------------------d~~~~VR~~A~~aL~~L~~~~g~---~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L 1682 (2612)
|..|.+|..|+.+++.++...|+ .+++.++|.+...+.+.. ..+|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE-ENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 12467899999999999987664 256777888777775544 55898999999
Q ss_pred HHHHHHhCh----------------------hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1683 SEVLAALGT----------------------VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1683 ~~i~~~~g~----------------------~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
..++...|. ..++.++|.+.+.+.++++.+|.+++.+++.+...++..+.+|++.++|
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 988887653 1335566666666899999999999999999999988888999999999
Q ss_pred HHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000051 1741 AILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2612)
Q Consensus 1741 ~ll~~L~d~~~--~VR~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~ 1814 (2612)
.++..+.|+.. .+|..++.++..++..++.+ .++.++|.+...+.|.+|++|..++..++.++..+.....
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~--- 555 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ--- 555 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS---
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc---
Confidence 99999999875 89999999998888766655 5667899999999999999999999999998866532100
Q ss_pred ccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 000051 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2612)
Q Consensus 1815 ~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~ 1892 (2612)
...... ..+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+..
T Consensus 556 ----~~~~~~--------------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~ 617 (1230)
T 1u6g_C 556 ----PSSFDA--------------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 617 (1230)
T ss_dssp ----CCCCCC--------------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHH
T ss_pred ----ccccch--------------HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Confidence 000000 123455666666666 788999999999999999999888888899999999998
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhc----hhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHH
Q 000051 1893 SLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2612)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~ 1968 (2612)
.+.+. ..|..+.++++.++...+ ..+.+.++|.+...++++++.+|.+++.+++.++...+.....+++..++.
T Consensus 618 ~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 618 RLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp HTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred Hhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 88754 478889999998875432 236789999999999999999999999999999887764333334444444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhc
Q 000051 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045 (2612)
Q Consensus 1969 ~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~ 2045 (2612)
.+...+.+.|.+++..+..++..+.+..+.. ..+.++|.++..+++....+.+++++..++
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~---------------- 759 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF---------------- 759 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHH----------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHH----------------
Confidence 4445567889999999999998887654432 245667777666655442333333332221
Q ss_pred cCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC-----CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhh
Q 000051 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2612)
Q Consensus 2046 ~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~-----~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~ 2120 (2612)
..+... +. -.+.+..+++.++..+.. .++..+..+..+++.++...+... ..+++.+...
T Consensus 760 ------------~~l~~~-~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~~~~ 824 (1230)
T 1u6g_C 760 ------------QALVVT-GT-NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-PAVVGQFIQD 824 (1230)
T ss_dssp ------------HHHHTT-CC-TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-HHHHTTTTTT
T ss_pred ------------HHHHhc-CC-CCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-HHHHHHHHHH
Confidence 111110 11 023556666666655432 245667788889998887665533 2677778877
Q ss_pred cCC--CChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2121 VGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2121 l~~--~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
+++ .+...+..++.+++.+... .++.+ .+++.+.++..+.|+++.||.+|+.+|+.++..
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~--~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~--------------- 886 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHH--IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG--------------- 886 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHH--SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---------------
T ss_pred hCCCCccHHHHHHHHHHHHHhccc--CCCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc---------------
Confidence 775 4567788888888887653 23444 367889999999999999999999999988631
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHH
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~ 2278 (2612)
++..++|.+++++.++ ++.|.....+|..++...+.+.+.||
T Consensus 887 ---------------------------~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~---------- 928 (1230)
T 1u6g_C 887 ---------------------------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPY---------- 928 (1230)
T ss_dssp ---------------------------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHH----------
T ss_pred ---------------------------CHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhh----------
Confidence 1234567777777654 56677777888887765443344444
Q ss_pred HhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhh
Q 000051 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL 2358 (2612)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l 2358 (2612)
.+++++.+++.+.+.++.+|..++.|||.+....+ +.++|.|.+.+
T Consensus 929 --------------------------------~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~l 974 (1230)
T 1u6g_C 929 --------------------------------VENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGYL 974 (1230)
T ss_dssp --------------------------------HHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTTS
T ss_pred --------------------------------HHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHHh
Confidence 44555555555555566677777777887765433 56777777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh---HHHHHHHHHH
Q 000051 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELL 2435 (2612)
Q Consensus 2359 ~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll 2435 (2612)
.++++.+|..++.+++.++...+... .++.+.++..+...+.|++..+|.++..+|+.++...|+. .+..+++.+.
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~-~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 77777778778877777776665554 4566677777777888999999999999999999887742 1333333333
Q ss_pred hhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhH
Q 000051 2436 NLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2612)
Q Consensus 2436 ~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2612)
+.....+...| ....+ -+++..+++.++|++|..|+++++.++... ..+.
T Consensus 1054 ~~~~~~~~~~~-----------------~v~~g--------p~k~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~~ 1103 (1230)
T 1u6g_C 1054 NETKVRKELIR-----------------EVEMG--------PFKHTVDDGLDIRKAAFECMYTLLDSCLDR-----LDIF 1103 (1230)
T ss_dssp HTTSCCGGGEE-----------------EEEET--------TEEEEEETHHHHHHHHHHHHHHHHHSSCSS-----SCHH
T ss_pred HHhcccHHhhe-----------------eeccC--------CcccccCCcHHHHHHHHHHHHHHHHHHHHh-----CCHH
Confidence 22111110000 00111 134456778899999999999999987543 2478
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcC--CcchhhhhHH----------HHHHH
Q 000051 2516 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPVRLAAE----------RCAVH 2583 (2612)
Q Consensus 2516 ~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~vk~aae----------~~~~~ 2583 (2612)
++++.++.++.|+ .|+|..+..+|..++..+|..+.++++.+++++-+.+.. |...||+..| ||+.+
T Consensus 1104 ~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~ 1182 (1230)
T 1u6g_C 1104 EFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAA 1182 (1230)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999995 899999999999999999999999999999999887533 4555666555 88888
Q ss_pred Hhcccccch
Q 000051 2584 AFQLTRGII 2592 (2612)
Q Consensus 2584 ~~~~~~~~~ 2592 (2612)
+.++.+.+.
T Consensus 1183 l~~~~~~~~ 1191 (1230)
T 1u6g_C 1183 LLTIPEAEK 1191 (1230)
T ss_dssp TTSSCSCSS
T ss_pred HHhCCCccc
Confidence 888876543
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=409.67 Aligned_cols=742 Identities=13% Similarity=0.154 Sum_probs=567.8
Q ss_pred hHhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh---
Q 000051 1132 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--- 1206 (2612)
Q Consensus 1132 ~~~Ll~~l-~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~--- 1206 (2612)
+..++... .++|..+|+.|.+.|..+.+. .|+.+..+++.+.+ . ..+.++|..++..|+....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-------~-----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-------E-----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-------T-----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-------C-----CCChHHHHHHHHHHHhhccCcC
Confidence 35667777 789999999999999876554 23444333333321 0 1245789888888887642
Q ss_pred ------------h-hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-chhhhhHHHHHHHhccCCCChHH
Q 000051 1207 ------------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 1272 (2612)
Q Consensus 1207 ------------~-~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~-~~~~~Llp~~~~~l~~~~~~~~~ 1272 (2612)
. ++++....+...++ .++.++++.||..+..++..+....+. ..|+.++|.+.+.+... .
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~---- 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-Q---- 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-S----
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-C----
Confidence 1 33344445656664 578888999999999999888887655 47999999998888652 0
Q ss_pred hhhHHhHHHHHHHHHhhhhccC----CcchHhHHHHHHHhcCCC--CHHHHHHHHhhhHHhHhhhcchh------HHHHH
Q 000051 1273 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA------PTLVS 1340 (2612)
Q Consensus 1273 ~d~vr~~~i~~l~~La~~l~~~----~~~~~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~~------~~li~ 1340 (2612)
+..+|+.++..++.+++.+... .+....+++.+...+.++ +++||.++.+|+..++...+... ..+++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 3467899999999999866533 356788899999999998 89999999999998765443221 22444
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-------
Q 000051 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 1411 (2612)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~------- 1411 (2612)
.+.+ +..++++..|..+..+|..++...+..... -. .+++.+...+.+. +..+|..++.++..+++...
T Consensus 228 ~l~~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4443 345567899999999999999876642211 11 5667677777776 78999999999999887631
Q ss_pred ----------ccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh
Q 000051 1412 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1412 ----------~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
..+.+++..++|.++..+.+ .+..+|.++..++..++..++...+..++|.+.+.+.+.+|+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778999999999874 3468999999999999988887677888999999999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhH
Q 000051 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 1553 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~ 1553 (2612)
|.+++.+++.++.+.. +.+.++++.++|.+...+.|+++.||.++++++++++..++.. +
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~------------------ 446 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-I------------------ 446 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG-S------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh-c------------------
Confidence 9999999999998764 7788889999999999999999999999999999998765310 0
Q ss_pred HHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC--CCcchhhHhhhHHHHHHHhcC-
Q 000051 1554 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 1630 (2612)
Q Consensus 1554 r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d- 1630 (2612)
...+.+..++|.+.+.+.+. +++|..++.+++.++..+++ +..+.+|++.+++.+...+.+
T Consensus 447 ---------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 447 ---------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp ---------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred ---------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 01123445666667777665 78999999999999987652 356889999999999999984
Q ss_pred -CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccC--------------CCHHHHHHHHHHHHHHHHHhChh
Q 000051 1631 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 1692 (2612)
Q Consensus 1631 -~~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~--------------~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2612)
.++.+|..+..+++.++...|++ ++..++|.+++.+... .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4567777777776532 12335678888999999998874
Q ss_pred ---hHHhHhHHHHHhccCCCh-hhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000051 1693 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2612)
Q Consensus 1693 ---~l~~llp~l~~~~~~~~~-~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~ 1768 (2612)
+.+.+++.++..+.+.++ .+|+.++.+++.++..+|..|.||++.++|.++..+.+++..+|..+..++..++...
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 457788888888887777 8999999999999999999999999999999999998877778888777766655444
Q ss_pred hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHH
Q 000051 1769 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2612)
Q Consensus 1769 ~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~ 1848 (2612)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 000 11223333
Q ss_pred HHHHccCC--CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000051 1849 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1915 (2612)
Q Consensus 1849 L~~~~~D~--~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~-----------~~~R~~A~~aL~~lv~~ 1915 (2612)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..+..+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 367999999999999998898999999999999999887432 45799999999999988
Q ss_pred hch---h---hhhhHHHHHhhhcCCC----ChhHHHHHHHHHHHHHHhhChhhHHHhHh-HHHHHHHHHhc---CCcHHH
Q 000051 1916 LGE---R---VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1981 (2612)
Q Consensus 1916 ~~~---~---~l~~llp~L~~~L~d~----~~~vR~~a~~aL~~li~~~~~~~l~~~l~-~ll~~l~~~L~---D~d~~V 1981 (2612)
+|+ . +.+.+++.+...+.|. +..+|..++.+++.++...++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 2 3566777777777664 88999999999999988885566778888 88998888765 567899
Q ss_pred HHHHHHHHHHHHH
Q 000051 1982 RESAGLAFSTLFK 1994 (2612)
Q Consensus 1982 r~~A~~al~~l~~ 1994 (2612)
++.|..+.+.+.+
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=398.58 Aligned_cols=726 Identities=15% Similarity=0.184 Sum_probs=556.3
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-h---
Q 000051 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L--- 1208 (2612)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~--- 1208 (2612)
..++....++|..+|+.|.+.+..+ +..|+.+..+...+... . ..+..+|..++..|+..... +
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~~~-----~------~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKL-----K------SEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTC-----T------TSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHhcc-----C------CCChHHHHHHHHHHHHHHHHccCCC
Confidence 3455555689999999999998654 34455443333333210 1 22458999999999977642 2
Q ss_pred CCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHh
Q 000051 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2612)
Q Consensus 1209 ~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La 1288 (2612)
+++....+...++ .+++|+++.||..+..++..+.+..+.+.|++++|.+.+.+... +..+|++++..++.++
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHH
Confidence 2222333555554 67899999999999999999988877888999999999988752 2467899999999988
Q ss_pred hhhccC------CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch----hHHHHHHHHHHhhcCCChHHHHHH
Q 000051 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE----APTLVSRLLDQLMKSDKYGERRGA 1358 (2612)
Q Consensus 1289 ~~l~~~------~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~----~~~li~~ll~~L~~~~~~~~R~~A 1358 (2612)
+..... ...+..+++.++..+++++++||..+.+++..++...... ...+++.++..+. +++...|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-DEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 765422 2336788999999999999999999999998777543322 2456666666544 4567899999
Q ss_pred HHHHHHHHhhhCcchhh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHc------
Q 000051 1359 AFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF------ 1429 (2612)
Q Consensus 1359 a~~L~~l~~~lg~~~l~-~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~--~~~~~~~~v~~ilp~ll~~l------ 1429 (2612)
+.+|..++...+..... -..+++.+.+.+.+. ++.+|..|+..+..+++. ..+.+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999865432111 015778888888876 789999999988888763 23446789999999999998
Q ss_pred -----CC-----------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh
Q 000051 1430 -----SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2612)
Q Consensus 1430 -----~D-----------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l 1493 (2612)
+| .+..||.++..+++.++..+++..+..++|.+.+.+.+++|+.|.+|+.+++.++.++++.+
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 45 34568999999999999988877778899999999999999999999999999999988888
Q ss_pred hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhh
Q 000051 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2612)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~ 1573 (2612)
..+++.++|.+...++|+++.||.+|+++++.+++.++.. .....
T Consensus 395 ~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------------------------------~~~~~ 439 (852)
T 4fdd_A 395 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-----------------------------------PPDTY 439 (852)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-----------------------------------CTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-----------------------------------hHHHH
Confidence 8899999999999999999999999999999998754210 01123
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1574 l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
+..+++.+.+.+.|.++.+|..|+.++++++...+ ..+.||++.+++.+...+.+........+..+++.++...|+.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~--~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh--HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 44567777777888889999999999999998754 3689999999999999999888888888999999999888754
Q ss_pred -----CchhhHHHHHH---HhccCCCHHHHHHHHHHHHHHHHHhChhh---HHhHhHHHHHhcc----------------
Q 000051 1654 -----NFPDLVSWLLD---ALKSDNSNVERSGAAQGLSEVLAALGTVY---FEHILPDIIRNCS---------------- 1706 (2612)
Q Consensus 1654 -----~~~~ll~~L~~---~L~~~~~~~~R~~aa~~L~~i~~~~g~~~---l~~llp~l~~~~~---------------- 1706 (2612)
+++.++|.+++ .+.++... .+ .+.++++.++..+|... ++.+++.++..+.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~d~~~~-~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLKDEDKD-LF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSCTTCTT-HH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHH-HH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 56777887774 33333332 34 67889999999988753 3455554433321
Q ss_pred -CCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc---hhhhhHHHH
Q 000051 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2612)
Q Consensus 1707 -~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~---~i~~llp~L 1780 (2612)
.++..++..++.+++.++..+|..|.+|+ +.+++.++.++.|+...||..+..+++.+...++.. +++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22566889999999999999999999998 789999999999999999999999999999887754 456789999
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccC--CCH
Q 000051 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--VSL 1858 (2612)
Q Consensus 1781 ~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D--~~~ 1858 (2612)
.+.+.+++..+|..++..+|++...++.. + .++...+++.++..+.+ ...
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~-----------------------~-----~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIE-----------------------M-----QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGG-----------------------G-----GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHh-----------------------H-----HHHHHHHHHHHHHHhCCCCCCc
Confidence 99998888899999999999987553200 0 12334566666665544 366
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhh--cCCC
Q 000051 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--LKDP 1935 (2612)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~--L~d~ 1935 (2612)
.+++.|+.+++.+....|..+.++++.+++..+..|.. .+...|..|..++..++..-+....+.+..++... ..++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999988889999999999999964 56678999999999999987777666666444332 3345
Q ss_pred ChhHHHHHHHH
Q 000051 1936 SASRRQGVCIG 1946 (2612)
Q Consensus 1936 ~~~vR~~a~~a 1946 (2612)
.++.+......
T Consensus 808 ~~~l~~~~~~~ 818 (852)
T 4fdd_A 808 KDDLRDMFCKI 818 (852)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555444433
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=391.51 Aligned_cols=751 Identities=13% Similarity=0.124 Sum_probs=564.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCC--ChhHHH-HHHHHHhc-cc------------ccc-CCh
Q 000051 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQT-TF------------VNT-VDA 1571 (2612)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~--~~~~r~-al~~L~~~-~~------------~~~-i~~ 1571 (2612)
.++++.+|..|.+.|.++.+. ....+++.+...+.+. +..+|. |...+-.. +. ... +..
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~ 90 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH
Confidence 567889999999999887542 1234566666666543 455663 33333221 00 011 455
Q ss_pred hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhh
Q 000051 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGM 1650 (2612)
Q Consensus 1572 ~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L~~~~ 1650 (2612)
.....+.+.+...+.+.+..+|..++.+++.++... .+ ....+.+++.+.+.+.++ ++.+|..+..+++.+++.+
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~-~p---~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE-LP---HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-GG---GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhh-Cc---ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 566677788888899989999999999999988752 11 114578999999999988 9999999999999999977
Q ss_pred CCC------CchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhChh-----hHHhHhHHHHHhccCCChhhHhHHHH
Q 000051 1651 GEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1651 g~~------~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
+++ +.+.+++.+...+.+.+ +..+|..++.+++.++..++.. ..+.+++.+.+.+.+.++.+|..++.
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 654 45667777777776653 5678999999888765433221 12456777777788899999999999
Q ss_pred HHHHhhhhhccchhhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh--------------------hchhhhhH
Q 000051 1719 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLLL 1777 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~-~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~--------------------~~~i~~ll 1777 (2612)
++..+....+..|.+|+. .+++.++..+.|.++.+|..++..+..++.... ...+..++
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999888876531 11234466
Q ss_pred HHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHH
Q 000051 1778 PAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2612)
Q Consensus 1778 p~L~~~l~-------d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~ 1850 (2612)
|.+...+. |++|.+|..+...++.+... +|.+..+.+++.+.
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l~ 375 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFVE 375 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHHH
Confidence 66655543 34577777777777766433 23233445566666
Q ss_pred HHccCCCHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-----hhhhhH
Q 000051 1851 MVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPSI 1924 (2612)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-----~~l~~l 1924 (2612)
..+.+.+|.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..++.+++.++...+. ..++.+
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 66788899999999999999998764 778889999999999999999999999999999999988764 357889
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhhC---hhhHHHhHhHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~aL~~li~~~~---~~~l~~~l~~ll~~l~~~L~--D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
+|.+...++++ +.+|..+|.+++.++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....|..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 99999999886 9999999999999988765 36677899999999999997 445899999999999999887753
Q ss_pred ---hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHH
Q 000051 2000 ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076 (2612)
Q Consensus 2000 ---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il 2076 (2612)
.+..++|.+++.|.+. +... ..++..- ..-....+......+++.+....|..+.+|++.++
T Consensus 535 ~~~~~~~l~~~l~~~l~~~-------------~~~~-~~i~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 599 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQT-------------MSVD-ENQLTLE-DAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM 599 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHH-------------TTSC-GGGCCHH-HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------------Hhhh-cccCChh-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2345556555544321 0000 0000000 00000001123556788888888989999999999
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHH
Q 000051 2077 PALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP 2152 (2612)
Q Consensus 2077 ~~Ll~~L~~~~~-~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~ 2152 (2612)
+.++..+.+.+. .+|+.+..+++.++...+. +++..+++.+...++++++.+|..++.+++.+++..+..+.+|.+
T Consensus 600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 679 (861)
T 2bpt_A 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH
T ss_pred HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH
Confidence 999999977766 8999999999998877654 467889999999998888999999999999999998888999999
Q ss_pred HHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccc---cccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2153 NMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2153 ~il~~L~~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
.+++.++..+.+++ .++|..+..+++.++...+... ++.+++.+.+.+... +|. +
T Consensus 680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~---------------~~~----~- 739 (861)
T 2bpt_A 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK---------------PEN----G- 739 (861)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC---------------CSS----S-
T ss_pred HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC---------------CCC----C-
Confidence 99999999998764 8999999999999998765543 233333333322110 000 0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--hhhhhhchhhhhHHHHHHhcCC--C-CHhHHHHHHHHHHHHHHh
Q 000051 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR--F-PWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~--~~~l~p~v~~i~~pLi~~l~~~--~-~~~vk~~al~~L~~L~~~ 2302 (2612)
..-.. .-...+|..++.+++.++...+ +..+.+|+..++..+.+.+.|. . ++.+|.+++.+++.++..
T Consensus 740 d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 740 TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 00000 0013578899999999998877 3569999999999888888763 1 789999999999999999
Q ss_pred c-CCCccCchH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000051 2303 G-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLS 2341 (2612)
Q Consensus 2303 ~-~~~l~p~lp-qL~~~~~k~L~d---~~~~vR~~Aa~aLg~L~ 2341 (2612)
+ |..+.+|++ ++++.+++.+.. .+..++..|..++|.+.
T Consensus 813 ~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 813 FPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp CTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 9 889999999 999999998873 47889999999999874
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=392.93 Aligned_cols=707 Identities=15% Similarity=0.173 Sum_probs=539.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhc--cccccCChhhHhhHHHHHHHh
Q 000051 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQT--TFVNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~--~~~~~i~~~~l~~iip~L~~~ 1584 (2612)
..++++.+|+.|.+.|.++.. +|.+...+-.++..+.+.+..+|. |.-.+-+. .....+++.....+.+.+.+.
T Consensus 22 ~~s~d~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 22 SQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HTCSCHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HhCcCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 346789999999999987743 466555555555544566677884 32222210 122335566677888899999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--------Cch
Q 000051 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFP 1656 (2612)
Q Consensus 1585 l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~--------~~~ 1656 (2612)
+.+++..+|..++.+++.++..- . ....+.+++.+.+.+.++++.+|..+..+++.+++..++. .+.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-C----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 99999999999999999998852 2 2346789999999999999999999999999999987643 256
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
.++|.+++.+.+. +..+|..++.+++.++...+.. .++.+++.+.+.+.++++.+|..++.+|+.++...+..+.|
T Consensus 174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 7888888877654 5678999999988776544432 34678888888889999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----hhhchhhhhHHHHhhccC-----------C-----------
Q 000051 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N----------- 1786 (2612)
Q Consensus 1734 ~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~-----~~~~~i~~llp~L~~~l~-----------d----------- 1786 (2612)
|++.+++.++..+.|.++.||..|++++..+++. +-...++.++|.+...+. |
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 9999999999999999999999999888776532 112244566777766552 2
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHH
Q 000051 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2612)
Q Consensus 1787 ~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~ 1866 (2612)
.+|.+|..+...++.+. ..+|.+..+.+++.+...+.|.++.+|.+|+.
T Consensus 333 ~~~~vr~~a~~~L~~la-------------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLA-------------------------------NVYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp CCCCHHHHHHHHHHHHH-------------------------------HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45666666666665553 23333344556666666678889999999999
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch----hhhhhHHHHHhhhcCCCChhHHHH
Q 000051 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQG 1942 (2612)
Q Consensus 1867 ~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~ 1942 (2612)
+++.++.+.+..+.++++.+++.++..+.|+++.+|..++.+++.++...+. .....+++.+.+.+.++++.+|..
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999988888899999999999999999999999999999999987654 357788899999999999999999
Q ss_pred HHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHH
Q 000051 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 2022 (2612)
Q Consensus 1943 a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al 2022 (2612)
++.+++.++...+.. +.+|++.+++.+...+.+.+......+..+++.+.+..|....
T Consensus 462 a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~--------------------- 519 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN--------------------- 519 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGC---------------------
T ss_pred HHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhc---------------------
Confidence 999999998877654 7889999999999888766555555555555555544332110
Q ss_pred HHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHH---hcCCCCHHHHHHHHHHHH
Q 000051 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLS---AMGDDDMDVQSLAKEAAE 2099 (2612)
Q Consensus 2023 ~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~---~L~~~~~~vr~~a~~al~ 2099 (2612)
-.+|++.++|.+++ .+.+.+++++ .+.++++
T Consensus 520 ---------------------------------------------~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~ 553 (852)
T 4fdd_A 520 ---------------------------------------------KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLS 553 (852)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHH
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHH
Confidence 02244555555553 3445555554 4566666
Q ss_pred Hhhhhccc---ccHHHHHHHHHhhc-----------------CCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHH
Q 000051 2100 TVTLVIDE---EGVESLVSELLKGV-----------------GDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST 2157 (2612)
Q Consensus 2100 ~l~~~~~~---~~l~~ll~~Ll~~l-----------------~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~ 2157 (2612)
.++..++. +++..+++.++..+ ..++...|..++.+++.+++..+.++.+|+ +.+++.
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 66665543 22334433332222 234677899999999999999988888887 789999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHH
Q 000051 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237 (2612)
Q Consensus 2158 L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~ 2237 (2612)
++.++.|++..||..+..+++.++...+... -+++..++|.+.+.
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~l~~~lp~l~~~ 678 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACFQHV-----------------------------------KPCIADFMPILGTN 678 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT-----------------------------------GGGHHHHHHHHHHT
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999886544221 13455678888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCCCccCchHHHHH
Q 000051 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316 (2612)
Q Consensus 2238 L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~-~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~ 2316 (2612)
+..+..++|..|+.++|.++...+ ..+.||+..++++|++++.+.. +..++..+..++|.|+...+..+.||++++++
T Consensus 679 l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~ 757 (852)
T 4fdd_A 679 LNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR 757 (852)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHH
Confidence 877788999999999999999997 6799999999999999998642 45799999999999999988889999999999
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhccCC-hhHHHHHHHHhh
Q 000051 2317 TFIKCLQD-STRTVRSSAALALGKLSALSTR-VDPLVGDLLSSL 2358 (2612)
Q Consensus 2317 ~~~k~L~d-~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~Ll~~l 2358 (2612)
.+++.|.+ .+.+.|..|..+|..++...|. +.+.+..++..+
T Consensus 758 ~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~ 801 (852)
T 4fdd_A 758 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAV 801 (852)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 99999987 4777899999999999876554 334444444544
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=396.72 Aligned_cols=748 Identities=15% Similarity=0.155 Sum_probs=553.4
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCC--ChhHHH-HH---HHHHhc----------ccccc
Q 000051 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SL---DILLQT----------TFVNT 1568 (2612)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~--~~~~r~-al---~~L~~~----------~~~~~ 1568 (2612)
+..+.++++.+|..|...|.++... ....+++.|+..+.++ +..+|. |. +..+.. .....
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345577899999999999887642 2345666777766553 355663 22 222210 00123
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L 1646 (2612)
+.......+.+.+.+.+.+.+..+ ..++++++.++.... ...+.+.+++.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 455566677777888888877778 889999999887521 1245678999999999998 999999999999999
Q ss_pred HhhhCC----CCchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhChhh----H-HhHhHHHHHhccCCChhhHhHH
Q 000051 1647 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVY----F-EHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1647 ~~~~g~----~~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~~----l-~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
++.+++ .+++.+++.+...+.+++ +..+|..++.+++.++..++... . +.+++.+...+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987653 356778888888887663 56789999999988776544321 1 2467777777788899999999
Q ss_pred HHHHHHhhhhhccchhhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh------------------------c
Q 000051 1717 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT------------------------T 1771 (2612)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l~-~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~------------------------~ 1771 (2612)
+.++..+....++.|.||+. .+++.++..+.+.++.+|..+++.+..+++.... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999888877654210 0
Q ss_pred hhhhhHHHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHH
Q 000051 1772 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~-------d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~ 1844 (2612)
.++.++|.+.+.+. |++|++|.++...++.+... +|.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-------------------------------~~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-------------------------------CEDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-------------------------------HGGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-------------------------------CcHhhHHH
Confidence 12344555544432 45677777777777666433 22233445
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-----
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1918 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~----- 1918 (2612)
+++.+...+.|.++.+|.+|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..|+.+++.++...++
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 66666667789999999999999999998765 667789999999999999999999999999999999998764
Q ss_pred hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC-------------hhhHHHhHhHHHHHHHHHhcCC---cHHHH
Q 000051 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1982 (2612)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~D~---d~~Vr 1982 (2612)
..++.+++.+...+.++ +.+|..++.+++.++...+ +..+.+|++.++|.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 35788889898888885 8999999999999987654 1346789999999999999765 45789
Q ss_pred HHHHHHHHHHHHHhChh---hhhhhHHHHHHhccCC---------CcchHHHHHHHHHhhhcccccccccchhhccCCcc
Q 000051 1983 ESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2612)
Q Consensus 1983 ~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~---------~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~ 2050 (2612)
..+..+++.+....|.. .+..++|.+++.+... +.+..... .+.
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~------------------------~~~ 581 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN------------------------DLQ 581 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH------------------------HHH
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH------------------------HHH
Confidence 99999999998887753 2334455554443210 00000000 001
Q ss_pred hhHHHHHHHHHHHhC-CChhhhHhhHHHHHHHhcCCCC--HHHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhcCCC
Q 000051 2051 AFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN 2124 (2612)
Q Consensus 2051 ~~~~~al~~La~~~g-~~l~~~l~~il~~Ll~~L~~~~--~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~~~ 2124 (2612)
.....+++.+....| ..+.+|++.++|.++..+.+.+ +.+|+.+..+++.++...+. +++..+++.+...+.+.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 123456777777778 8899999999999999997664 47899999999998876543 56888999999998876
Q ss_pred -ChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc---cccHHHHHHH
Q 000051 2125 -QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV---QPSYIKVIRD 2198 (2612)
Q Consensus 2125 -~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~ 2198 (2612)
++.+|..++.+++.++...+..+.+|.+.+++.++..+.+ .+.+++..+..+++.++...+.+. ++.+++.+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 8999999999999999988888999999999999999986 467899999999999987665442 2333333322
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh---------hhhhhch
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------QSLKEFV 2269 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~---------~~l~p~v 2269 (2612)
.+.... + +. ..-...+ ...+|..+..+++.++...+. ..+.||+
T Consensus 742 ~~~~~~---------------~---~~--d~~~~~~-------~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 742 ASQAQV---------------D---KS--DYDMVDY-------LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp HHTCCC---------------C---TT--CHHHHHH-------HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred HHhccC---------------C---CC--ChHHHHH-------HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 221000 0 00 0000000 125788888899988877653 4688999
Q ss_pred hhhhHHHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCC-CccCc-hHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcc
Q 000051 2270 IPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALALGKLSALS 2344 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~-~~~vk~~al~~L~~L~~~~~~-~l~p~-lpqL~~~~~k-~L~d~~~~vR~~Aa~aLg~L~~~~ 2344 (2612)
..+++.+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++|.+..+.
T Consensus 795 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 795 EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 998877766666654 678999999999999999988 78888 5778888888 999999999999999999997654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=393.87 Aligned_cols=732 Identities=16% Similarity=0.182 Sum_probs=561.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-----------
Q 000051 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM----------- 1650 (2612)
Q Consensus 1584 ~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~----------- 1650 (2612)
.+.+++.++|+.|.+.+..+... ..+.+.+.+...+.+ ..+.+|..|+..|.......
T Consensus 9 ~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 9 KTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34466789999999999876541 234466666666665 46899999999999876321
Q ss_pred ----CCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-hhHHhHhHHHHHhccCC--ChhhHhHHHHHHHHh
Q 000051 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYL 1723 (2612)
Q Consensus 1651 ----g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~l~~llp~l~~~~~~~--~~~vR~~~~~~l~~L 1723 (2612)
.++....+.+.+++.+.++... . ..++++++.++...+. ..+++++|.+.+.+.++ ++.+|++++.+++.+
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~-~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSS-S-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHH-H-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 1112334555677777765544 4 7888999999887655 67889999999999888 899999999999999
Q ss_pred hhhh-ccchhhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhch-----hhhhHHHHhhccCCCchHHHHHH
Q 000051 1724 PRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSS 1795 (2612)
Q Consensus 1724 ~~~~-g~~f~p~l~~iip~ll~~L~d~--~~~VR~~Al~al~~lv~~~~~~~-----i~~llp~L~~~l~d~~w~vR~~a 1795 (2612)
+..+ ++.|.++++.+++.+...+.++ +..+|..+++++..++..++... .+.+++.+.+.+.++++++|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9876 4568889999999999999987 68899999999988765443221 12467777777888899999999
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHhc
Q 000051 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2612)
Q Consensus 1796 ~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~-~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~ 1874 (2612)
++.++.++...+.. +.. +.. .+++.++....|.+..||..|++.|..++..
T Consensus 238 ~~~l~~l~~~~~~~-----------------------~~~-----~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 238 LQNLVKIMSLYYQY-----------------------MET-----YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp HHHHHHHHHHSGGG-----------------------CHH-----HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH-----------------------HHH-----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999987543210 111 122 4555555666788899999999999998864
Q ss_pred Ch---------------------hhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000051 1875 TP---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2612)
Q Consensus 1875 ~~---------------------~~l~~~l~~ll~~L~~~L~-------~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp 1926 (2612)
.. ...+.+++.+++.++..+. +.++..|..|..+++.++...++.+.+.++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 369 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 369 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH
Confidence 21 1233456777888888775 3467899999999999999999888899999
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-----hhh
Q 000051 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAI 2001 (2612)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~-----~~~ 2001 (2612)
.+...+.++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||..|+.+++.+....+. ..+
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 999999999999999999999998776665667788999999999999999999999999999999887653 345
Q ss_pred hhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhC--------------CC
Q 000051 2002 DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG--------------PG 2067 (2612)
Q Consensus 2002 ~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g--------------~~ 2067 (2612)
+.++|.++..|.++ .. +...++.+++.++..++ ..
T Consensus 450 ~~~l~~l~~~l~~~-~~------------------------------v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~ 498 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PR------------------------------VASNVCWAFSSLAEAAYEAADVADDQEEPATYC 498 (876)
T ss_dssp HHHHHHHHHHTTSC-HH------------------------------HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCS
T ss_pred HHHHHHHHHHHcCC-HH------------------------------HHHHHHHHHHHHHHHhhhccccccccccccchh
Confidence 66777777766552 10 01124456666666544 35
Q ss_pred hhhhHhhHHHHHHHhcCCC---CHHHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhcC-----------CCC----h
Q 000051 2068 LNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVG-----------DNQ----A 2126 (2612)
Q Consensus 2068 l~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~-----------~~~----~ 2126 (2612)
+.||++.++|.|+..+.+. +..+|..+.++++.++...+. +.+..+++.++..+. +++ +
T Consensus 499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 8899999999999998654 467899999999999987764 345667776665543 222 4
Q ss_pred hHHHHHHHHHHHHHHhcc-cchhccHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Q 000051 2127 SIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2612)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~-~~~~~~~~~il~~L~~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~ 2203 (2612)
.+|..++.+++.++...+ .++.+|.+.+++.++..+++.. ..++..+..+++.++...+...
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~--------------- 643 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF--------------- 643 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGG---------------
T ss_pred HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhH---------------
Confidence 578899999999999888 8899999999999999998764 4788888888888775432211
Q ss_pred hhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC
Q 000051 2204 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282 (2612)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~ 2282 (2612)
..++..++|.+...+.+. ++++|..+..+++.++...+ ..+.||+..+++.++..+.+
T Consensus 644 --------------------~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 644 --------------------LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp --------------------GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCC
Confidence 134455778888888876 88999999999999999988 67999999999999999976
Q ss_pred C-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHhc-c-----
Q 000051 2283 R-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-----------RTVRSSAALALGKLSAL-S----- 2344 (2612)
Q Consensus 2283 ~-~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~-----------~~vR~~Aa~aLg~L~~~-~----- 2344 (2612)
. .+.++|..++.+++.++..+|..+.+|+|.+.+.+.+.+.+.. ..+|..+..+++.++.. +
T Consensus 703 ~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~ 782 (876)
T 1qgr_A 703 ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782 (876)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 3 3578999999999999999999999999999999999887652 27999999999877432 1
Q ss_pred -----CChhHHHHHHHHhh----hcC--CHHHHHHHHHHHHHHHHhcCC-CcChHH-HHHHHHHHHH-hhcCCCHHHHHH
Q 000051 2345 -----TRVDPLVGDLLSSL----QVS--DAGIREAILTALKGVLKHAGK-SVSSAV-KIRVYSVLKD-LVYHDDDHVRVS 2410 (2612)
Q Consensus 2345 -----~~~~~~l~~Ll~~l----~~~--d~~vr~~~l~AL~~vi~~~g~-~~~~~~-~~~i~~~L~~-~l~~~~~~vr~~ 2410 (2612)
..+.++++.++..+ .++ +..+|..++.+|..++...|. .+ .++ .+.++..+.. .+.++++.+|..
T Consensus 783 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~r~~ 861 (876)
T 1qgr_A 783 VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKAKTL 861 (876)
T ss_dssp CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhHHHH
Confidence 24556666666554 445 678999999999999998876 44 334 4455555555 788899999999
Q ss_pred HHHHHHHHHhhC
Q 000051 2411 AASILGIMSQCM 2422 (2612)
Q Consensus 2411 aa~~Lg~L~~~~ 2422 (2612)
|+.++|.+++..
T Consensus 862 a~~a~~~~~~~~ 873 (876)
T 1qgr_A 862 ARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998654
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=374.11 Aligned_cols=565 Identities=18% Similarity=0.215 Sum_probs=449.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~ 1417 (2612)
.+..+++.|.+. ++..|..|+..++.++...|+.... ..+++.|.+.+ ++ ++.+|..+..+++.+....+. ..+
T Consensus 11 ~i~~l~~~l~s~-~~~~R~~A~~~l~~i~~~~~~~~~~-~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~~ 84 (588)
T 1b3u_A 11 PIAVLIDELRNE-DVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PEY 84 (588)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GGG
T ss_pred cHHHHHHHhhcc-cHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HHH
Confidence 466777777654 5789999999999998877765442 36888888766 44 688998888888776655442 246
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.....+++|..|..++.+++.++...+.. .
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~ 161 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H
Confidence 677889888888999999999999999999998888766 455666655566778899999999999988766543 3
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ 1576 (2612)
.+.++|.+..+++|+++.||..|+++|+.+++.++.+.. ...
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~~ 203 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KSE 203 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HHH
Confidence 567889899999999999999999999999987653211 123
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-Cc
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF 1655 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-~~ 1655 (2612)
++|.+...++|.++.+|..|..+++.++...+. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++ +.
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 445555555666677788888888887765432 1244567888888888888888988888888888877655 34
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh-----hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1656 ~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
+.++|.+...+.++ ...+|..++.+++.++..+|.+ .++.++|.+...+.++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 56777777777644 4568888888888888887764 45778888888899999999999999999999999874
Q ss_pred hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000051 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2612)
Q Consensus 1731 f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~-~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~ 1809 (2612)
. +.+.++|.+...+.|++++||..+..++..+...++.+ ..+.++|.+...+.|.+|++|..+++.++.+...++
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-- 434 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG-- 434 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC--
Confidence 3 45678999999999999999999999999998877654 346789999999999999999999999998764431
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHhChhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 000051 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2612)
Q Consensus 1810 ~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~ 1888 (2612)
.+. .+.+++.+...+.|.+..||..|+..++.++...+.. .+++.++|
T Consensus 435 -----------------------------~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 435 -----------------------------VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp -----------------------------GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 111 1246666777789999999999999999998866543 34677888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHH
Q 000051 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2612)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll 1967 (2612)
.+...+.++++.+|..+..+++.++..+|.. +.+.++|.+...++|+++++|..++.+++.+....+.... .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 8888888999999999999999999988765 5788999999999999999999999999999877665432 25778
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHH
Q 000051 1968 PTIRTALCDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1968 ~~l~~~L~D~d~~Vr~~A~~al~~l 1992 (2612)
|.+...+.|+|++||..|+.+++.+
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHh
Confidence 8888888999999999999999765
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-29 Score=349.39 Aligned_cols=566 Identities=18% Similarity=0.222 Sum_probs=449.6
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000051 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
+..++..+.++++.+|..|.++++.++..++.. .... ++|
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~---------------------------------------l~~ 52 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSE---------------------------------------LLP 52 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHT---------------------------------------HHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHH---------------------------------------HHH
Confidence 456777888999999999999999887654321 1223 344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhh
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDL 1658 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-~~l 1658 (2612)
.+.... +.++++|..++..++.++..++. ..|...+++.+..++.|+++.||..|..+++.++...+++.+ +.+
T Consensus 53 ~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l 127 (588)
T 1b3u_A 53 FLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127 (588)
T ss_dssp HHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH
T ss_pred HHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 444433 45668888888888877765543 235677888888888899999999999999999987765433 345
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhH
Q 000051 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2612)
Q Consensus 1659 l~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~i 1738 (2612)
+|.+..... ++....|..++..++.+....+....+.++|.+.+.+.++++.+|..++.+++.++..+|.. .+.+.+
T Consensus 128 ~~~l~~l~~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l 204 (588)
T 1b3u_A 128 VPLVKRLAG-GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEI 204 (588)
T ss_dssp HHHHHHHHT-CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTH
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHH
Confidence 665554444 44566888888888888887777667888898889999999999999999999999988873 566789
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000051 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2612)
Q Consensus 1739 ip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~-~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2612)
+|.+...+.|+++.||..|..++..+....+++ ..+.++|.+...+.|++|++|..+++.+|.+....
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----------- 273 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV----------- 273 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH-----------
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999988877654 34568898888899999999999999999886432
Q ss_pred CCCCCccchHHHHHHHHHHhChh-hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHh
Q 000051 1818 GSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EIMPVLMNTLISSL 1894 (2612)
Q Consensus 1818 ~~ddd~~~~~~~~~~l~~~Lg~~-~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~~l~~ll~~L~~~L 1894 (2612)
|.+ ..+.+++.+...+.|.++.||..|...++.++...+.... .+++.++|.+...+
T Consensus 274 --------------------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 274 --------------------GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333 (588)
T ss_dssp --------------------CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred --------------------CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence 111 1234566666677899999999999999999987765432 57888889999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHH
Q 000051 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2612)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2612)
.++++.+|..++.+++.++..+|.. ..+.++|.+...++|+++++|..++.+++.++...+... +.+.++|.+...
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~ 410 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVEL 410 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHH
Confidence 9999999999999999999988876 467899999999999999999999999999887666442 456788888899
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhh-hhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchh
Q 000051 1974 LCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052 (2612)
Q Consensus 1974 L~D~d~~Vr~~A~~al~~l~~~~g~~~~-~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~ 2052 (2612)
+.|++..+|..++.+++.+....|...+ +.++|.++..|.++... +...
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~------------------------------Vr~~ 460 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA------------------------------IREA 460 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH------------------------------HHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH------------------------------HHHH
Confidence 9999999999999999999988887543 45677777777654320 1123
Q ss_pred HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-ccHHHHHHHHHhhcCCCChhHHHH
Q 000051 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRS 2131 (2612)
Q Consensus 2053 ~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~~~~~~vR~~ 2131 (2612)
+..+++.++..+|.. .+++.++|.+...+.+++..+|..++.+++.+...++. .....+++.++..++|+++.+|..
T Consensus 461 a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 456667777766654 35688999999888899999999999999999887654 456789999999999999999999
Q ss_pred HHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000051 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2612)
Q Consensus 2132 A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~ 2181 (2612)
++.+++.++...+.++. .+.+++.+..+++|+|.+||..|..|++.+.
T Consensus 539 a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999987665432 2567777778889999999999999998763
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=271.77 Aligned_cols=310 Identities=26% Similarity=0.476 Sum_probs=280.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--ccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~--~~~~ 1415 (2612)
.++.+++.+..++ ...++.++..++.++.+-+........+++.+.+.+.++++. ++|+.++..+++..+ ..++
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 3444556665544 567899999999998865433333347889999999988655 999999999997665 4789
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCC-ChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
||+..++|.++..++|....||++|..++..++..++++.++.++|.+++.|.+. +|+.|.+|+.+++.++..+|+++.
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999765 799999999999999999999999
Q ss_pred hhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhH
Q 000051 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l 1574 (2612)
..+|+++|.+.+++.|..++|..+|..++..++..+.|.++.+++|.|++++.+| +.+.+|++.|..|+|+..+++|.+
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHHH
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchhH
Confidence 9999999999999999999999999999999999999999999999999999999 458899999999999999999999
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCC
Q 000051 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
+.++|.|.|+|.+++..+++.++-+++|||+++.+|.+..||+|.++|.+.+.... .+|++|+.|.+|+..+.+..+.
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999997763 6899999999999999887554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-18 Score=245.41 Aligned_cols=652 Identities=12% Similarity=0.116 Sum_probs=404.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcC--C
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~--~ 1126 (2612)
+++.++|.+++|||+.+| |+++|++... .|.....+..+.. ..+.+..+|.+|. ..|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-----~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLET-----QDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHT-----STTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhc-----CCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468899999999999999 9999987631 1322333333322 2334566777764 4575321 1
Q ss_pred CCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000051 1127 DFGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2612)
Q Consensus 1127 ~~~~~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2612)
.++++ + ..+++.+.+++..+|++++++++.++. .+|+.|++++..+.+.. .+ .+...++++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SN------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CS------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CC------CCHHHHHHHHHH
Confidence 23332 4 577888877779999999999999876 58888888888887642 11 123578899999
Q ss_pred HHHhhhhhCC--CC---hhH-----------HHHHHH--hhhcCCCcH---HHH--HHHHHHHHHHHHhh-----Cc---
Q 000051 1201 LHSAADVLRT--KD---LPV-----------IMTFLI--SRALADTNA---DVR--GRMLNAGIMIIDKH-----GR--- 1249 (2612)
Q Consensus 1201 l~~~~~~~~~--~~---~~~-----------i~~~li--~~~l~d~~~---~VR--~~~~~a~~~~i~~~-----g~--- 1249 (2612)
+..+++.+.. .. ... ++..+. ..++.+... .+| ..++.++..++... ..
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999886542 11 011 112211 123444322 244 12222222222211 11
Q ss_pred chhhhhHHHHHHHhccCCC--Ch-------HHhhhHHhHHHHHHHHHhhh-hccCCcchHhHHHHHHHhcC-----CCCH
Q 000051 1250 DNVSLLFPIFENYLNKKAS--DE-------EKYDLVREGVVIFTGALAKH-LAKDDPKVHAVVDKLLDVLN-----TPSE 1314 (2612)
Q Consensus 1250 ~~~~~Llp~~~~~l~~~~~--~~-------~~~d~vr~~~i~~l~~La~~-l~~~~~~~~~i~~~L~~~L~-----~~~~ 1314 (2612)
+++...++.|.+++....+ .. ...+.+|..++..+..+... .+.-.+.++.+++.++..+. ...+
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 2345667777777754211 00 11234566666666655532 22123556667776666664 3356
Q ss_pred HHHHHHHhhhHHhHhhhc--------chhHHHH-HHHHHHhh----------------------cCCChHHHHHHHHHHH
Q 000051 1315 AVQRAVSSCLSPLMQSMQ--------DEAPTLV-SRLLDQLM----------------------KSDKYGERRGAAFGLA 1363 (2612)
Q Consensus 1315 ~Vq~~~~~~L~~lv~~~~--------~~~~~li-~~ll~~L~----------------------~~~~~~~R~~Aa~~L~ 1363 (2612)
.++..+.+.+..++.... +....++ ..++..+. .++.+..|+.|...|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 676666666655542211 1112233 22222221 1223467889999999
Q ss_pred HHHhhhCcchhhhhcHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHhc---ccchh-----hHHHH-HHHHHHHc
Q 000051 1364 GVVKGFGISSLKKYGIAATLREGLAD-----RNSAKRREGALLAFECLCEKLG---RLFEP-----YVIQM-LPLLLVAF 1429 (2612)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~i~~-----~~~~~~R~~Al~al~~L~~~~~---~~~~~-----~v~~i-lp~ll~~l 1429 (2612)
.++...|...+. .+++++.+.+.. ..+|+.|++|+++++.++++.. ....+ .+..+ ...++..+
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l 464 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh
Confidence 999988844443 577777777761 3379999999999999987521 11111 22222 23345556
Q ss_pred CCC---CHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhh-----------Cchhhhh
Q 000051 1430 SDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQLSQ 1495 (2612)
Q Consensus 1430 ~D~---~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~-----------~p~~l~~ 1495 (2612)
.|+ ++.||.+|+.+++.+.+.+++.....++|.+++.|.+++.+++..|+.+|..+++. .++.+.+
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 666 99999999999999998888778899999999999988899999999999998873 2456889
Q ss_pred hhchhHHHHhhhhcCCC---H--HHHHHHHHHHHHHHhhcCC---hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000051 1496 CLPKIVPKLTEVLTDTH---P--KVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2612)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~---~--~VR~aA~~aL~~l~~~~~~---~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2612)
+++.+++.++.+++... + .....+..|++.++...++ |++..+++.+...+
T Consensus 545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l--------------------- 603 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV--------------------- 603 (960)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---------------------
Confidence 99999999999987641 1 1446778888887776653 23333333333221
Q ss_pred cCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1568 TVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1568 ~i~~~~l~~iip~L~~~l~-d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L 1646 (2612)
....+ ..+...+..++++++.++.. ..++.+.++.+.++|.+...+.....+....+...++.+
T Consensus 604 --------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 604 --------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp --------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred --------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 11111 23456667788889888876 345677889999999999999887778888999999998
Q ss_pred HhhhC--CCCchhhHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHhChhhH--HhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1647 IRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1647 ~~~~g--~~~~~~ll~~L~--~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
..... .+++..++|.+. ..+.... ........+...+...+.... +.++..+.+...+.. .++.++.++
T Consensus 669 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~~ll 743 (960)
T 1wa5_C 669 VEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLL 743 (960)
T ss_dssp HHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHHHHH
Confidence 87652 125667777776 5554432 112333444444433332211 223322223333333 348899999
Q ss_pred HHhhhhhccc-hhhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHHHHHHhh
Q 000051 1721 KYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1721 ~~L~~~~g~~-f~p~l~~iip~ll~~L~d~-~~~VR~~Al~al~~lv~~~~ 1769 (2612)
+.++..+|.. |.||++.+++.++..+..+ .+.++...+..+..++-.++
T Consensus 744 ~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 794 (960)
T 1wa5_C 744 EHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794 (960)
T ss_dssp HHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcC
Confidence 9999999988 9999999999999998765 35555455444444443333
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-16 Score=233.72 Aligned_cols=726 Identities=14% Similarity=0.158 Sum_probs=438.8
Q ss_pred hHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCC
Q 000051 1056 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2612)
Q Consensus 1056 ~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2612)
.+++.++|++ ..++|+..|++|++.|++.... |....+...+. ..+.+..+|.+|. ..|.....
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQLL--QPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 3457788888 4568999999999999875321 22222332322 2355666776654 35765432
Q ss_pred CCCCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHH
Q 000051 1127 DFGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201 (2612)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~---~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al 1201 (2612)
+-.+.+ ..+++.+.+ ....+|++.+.+++.++. .||+.|++++..+.+...... +. ..+...+..+...|
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~----~~-~~~~~~~~~~l~iL 170 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAED----SP-VDGQGRCLALLELL 170 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhc----cC-CCcHHHHHHHHHHH
Confidence 222235 567776654 468999999999999875 588888888888877542100 00 00123456666666
Q ss_pred HHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHH
Q 000051 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVV 1281 (2612)
Q Consensus 1202 ~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i 1281 (2612)
..+++.+.+... ..-|... ++..=....+.+++.+..++...... +.++..+.
T Consensus 171 ~~l~ee~~~~~~----------------~~~~r~~-------~~~~l~~~~~~i~~ll~~~l~~~~~~----~~~~~~~l 223 (963)
T 2x19_B 171 TVLPEEFQTSRL----------------PQYRKGL-------VRTSLAVECGAVFPLLEQLLQQPSSP----SCVRQKVL 223 (963)
T ss_dssp HHHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTCC----HHHHHHHH
T ss_pred HhCHHHHhcccC----------------cHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHH
Confidence 666643211110 0001000 01000123566777777777643211 12444444
Q ss_pred HHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhc-chhHHHHHHHHHHhh----------cCC
Q 000051 1282 IFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSD 1350 (2612)
Q Consensus 1282 ~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~-~~~~~li~~ll~~L~----------~~~ 1350 (2612)
..+..... ++........+++.++..+. .++++..+.+|+..++.... ......+..++..+. ..+
T Consensus 224 ~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (963)
T 2x19_B 224 KCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG 300 (963)
T ss_dssp HHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCC
Confidence 44432222 21111112567777777775 45688889999988876421 111223222222211 122
Q ss_pred ChHHHHHHHHHHHHHHhhhC---------cchhhhhcHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHh-------
Q 000051 1351 KYGERRGAAFGLAGVVKGFG---------ISSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL------- 1410 (2612)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg---------~~~l~~~~i~~~L~~~i~~----~~~~~~R~~Al~al~~L~~~~------- 1410 (2612)
|.......+..+..++.... ...+. .+++.+.++..+ ..+..++..++..+..+++..
T Consensus 301 d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~ 378 (963)
T 2x19_B 301 DMETSHGICRIAVALGENHSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK 378 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 33344444555555443211 11111 455666655554 124445666666666666532
Q ss_pred ----cccchhhHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhh----
Q 000051 1411 ----GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL---- 1467 (2612)
Q Consensus 1411 ----~~~~~~~v~~ilp~ll~~l~D~~~---------------~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L---- 1467 (2612)
...+.+++.++++.++..+..++. ..|.++.+++..+....+...+..+++.+.+.+
T Consensus 379 ~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~ 458 (963)
T 2x19_B 379 QAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE 458 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC
Confidence 234567888888888887753221 236677778888877776666666666666666
Q ss_pred cCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcC
Q 000051 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT 1547 (2612)
Q Consensus 1468 ~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~ 1547 (2612)
++.+|+.+.+++.+++.++.+..+.....++.+++.+..+ .++++.||..++++++++++.+...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~-------------- 523 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADH-------------- 523 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHC--------------
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 6679999999999999999887665556677788755544 4468999999999999998765310
Q ss_pred CCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHH
Q 000051 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2612)
Q Consensus 1548 d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~ 1627 (2612)
...+..+++.+..++.+ +.++..|+.++..++... .+.+.||++.++..+...
T Consensus 524 -----------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 524 -----------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDV 576 (963)
T ss_dssp -----------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHH
Confidence 01223344455555544 577888999999999754 357899999999999999
Q ss_pred hcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----cCCCHHHH---HHHHHHHHHHHHHhChh--
Q 000051 1628 LVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SDNSNVER---SGAAQGLSEVLAALGTV-- 1692 (2612)
Q Consensus 1628 L~d--~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~----~~~~~~~R---~~aa~~L~~i~~~~g~~-- 1692 (2612)
+.. -....|..+.+++|.++...+++ ++..+++.+...+. +..+...+ .....+++.++..++..
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~ 656 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH 656 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 885 36789999999999999877622 45666666555443 22223233 24556778888776521
Q ss_pred -----------------------hHHhHhHHHHHhccC--CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1693 -----------------------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1693 -----------------------~l~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
..+.++|.+.+.+.. .++.+++.++.++..++..+|+.|.||++.+++.++....
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 736 (963)
T 2x19_B 657 EDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYS 736 (963)
T ss_dssp C---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHH
Confidence 234556655554432 4678999999999999999999999999999998877654
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhc-------cCCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000051 1748 DENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDG-------IFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2612)
Q Consensus 1748 d~~~~VR~~Al~al~~lv~~~~~~-----~i~~llp~L~~~-------l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~ 1815 (2612)
.... ...+..+..++..++.. .+..++..+... ..+++..+|.+...+++.++..++...
T Consensus 737 ~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----- 808 (963)
T 2x19_B 737 TIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----- 808 (963)
T ss_dssp HSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG-----
T ss_pred cCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH-----
Confidence 3211 13445566666644432 222222222211 122346688899999998886654221
Q ss_pred cCCCCCCccchHHHHHHHHHHhChhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh--hh----HHHHHHHHHH
Q 000051 1816 EGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP--KT----LKEIMPVLMN 1888 (2612)
Q Consensus 1816 ~~~~ddd~~~~~~~~~~l~~~Lg~~~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~--~~----l~~~l~~ll~ 1888 (2612)
+.... +..++..+..++...+..+..++++.|..++...+ .. +..+.+.++.
T Consensus 809 ---------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 867 (963)
T 2x19_B 809 ---------------------LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLI 867 (963)
T ss_dssp ---------------------GCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHH
T ss_pred ---------------------cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 11111 44566666666778888999999999999987543 22 2345666666
Q ss_pred HHHHHhcC
Q 000051 1889 TLISSLAS 1896 (2612)
Q Consensus 1889 ~L~~~L~~ 1896 (2612)
.++..+.+
T Consensus 868 ~l~~~l~~ 875 (963)
T 2x19_B 868 AVLEAIGG 875 (963)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 66666654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-17 Score=241.36 Aligned_cols=717 Identities=13% Similarity=0.125 Sum_probs=415.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCCCC
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2612)
+++.++|+.+.+||+..|++|++.|++... .|....+...+ ...+.+..+|..|. ..|.....+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-----~p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEA-----SPQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTT-----STHHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-----CHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 457778888999999999999999988642 12222233332 23355666776654 3465433222
Q ss_pred CCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000051 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2612)
Q Consensus 1129 ~~~~-~~Ll~~l~~---~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~ 1203 (2612)
.+.+ ..+++.+.+ ....+|++++++++.++. .|| .|++++..+.+....... +.. ++...+..+...|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~~~-~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---PNV-SADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---ccC-CCHHHHHHHHHHHHH
Confidence 2235 566766543 368999999999999875 477 888888888776432100 000 012356667777776
Q ss_pred hhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCC--ChHHhhhHHhHHH
Q 000051 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2612)
Q Consensus 1204 ~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~--~~~~~d~vr~~~i 1281 (2612)
+++.+... . -.++...++.. +. ...+.++++|.+++..... .......++..+.
T Consensus 155 l~EEi~~~-----------~-~~~~r~~~~~~--------l~----~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEAQVI-----------H-TSVKRVVLRAE--------IA----KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHHHHC-----------C-CSSCHHHHHHH--------HH----TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHhcc-----------C-cHHHHHHHHHH--------HH----HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 66421100 0 00111111111 11 1345566666666653211 1111224566666
Q ss_pred HHHHHHhh--hhccCCcchHhHHHHHHHhc----------------CCCCHHHHHHHHhhhHHhHhhhc-ch----hHHH
Q 000051 1282 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2612)
Q Consensus 1282 ~~l~~La~--~l~~~~~~~~~i~~~L~~~L----------------~~~~~~Vq~~~~~~L~~lv~~~~-~~----~~~l 1338 (2612)
..++.... +++.. ....+++.++. + .+++++++.++.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 66655444 23322 34556666665 4 12467899999999998886422 11 1233
Q ss_pred HHHHHHHh---h---cCCCh---HHHHHHHHHHHHHHhhhCc--------------chhhhhcHHHHHHHHHhC----CC
Q 000051 1339 VSRLLDQL---M---KSDKY---GERRGAAFGLAGVVKGFGI--------------SSLKKYGIAATLREGLAD----RN 1391 (2612)
Q Consensus 1339 i~~ll~~L---~---~~~~~---~~R~~Aa~~L~~l~~~lg~--------------~~l~~~~i~~~L~~~i~~----~~ 1391 (2612)
++.+++.. . ..+|. ......+..+..+...... ..+ ..+++.+..+... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~ 365 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPV 365 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCc
Confidence 33333211 1 12232 3444555555555432110 111 1345555555533 22
Q ss_pred CHHHHHHHHHHHHHHHHHh------------cccchhhHHHHHHHHHHHcCCC--------C-------HHHHHHHHHHH
Q 000051 1392 SAKRREGALLAFECLCEKL------------GRLFEPYVIQMLPLLLVAFSDQ--------V-------VAVREAAECAA 1444 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~------------~~~~~~~v~~ilp~ll~~l~D~--------~-------~~VR~aa~~al 1444 (2612)
+..++..++..+..+++.. ...+.+++..+++.++..+.-+ + ...|.++.+++
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTF 445 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHH
Confidence 5567777887777776622 1234677888888888877311 1 14678888888
Q ss_pred HHHHHhhcHHhHHhHHHHHHhhhcC-----CChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh-cCCCHHHHHH
Q 000051 1445 RAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSA 1518 (2612)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L-~D~~~~VR~a 1518 (2612)
..++..++...+..+++.+-+.+.. .+|+.+.+++.+++.+++++.+.....++.+++.+..+. .|.++.||..
T Consensus 446 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 446 MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence 8888877755556666666666654 799999999999999999877666677888888444443 2679999999
Q ss_pred HHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
++++++++++.+.+. + ..+..++|.+.+++ + +.++..|+.
T Consensus 526 a~~~l~~~~~~l~~~---------------~----------------------~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 526 ALETMGSYCNWLMEN---------------P----------------------AYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------H----------------------HHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 999999999876421 0 12233444455555 2 467888999
Q ss_pred HHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----c
Q 000051 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2612)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~----~ 1668 (2612)
++.++++... +.+.||++.++..+.+.+.. .....+..+.++++.++...+++ ++..+++.++..+. .
T Consensus 566 al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997643 47899999999999999987 46899999999999999877633 45555555554433 2
Q ss_pred CC-CHHHHH---HHHHHHHHHHHHhChh----------------hHHhHhHHHHHhccC--CChhhHhHHHHHHHHhhhh
Q 000051 1669 DN-SNVERS---GAAQGLSEVLAALGTV----------------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1669 ~~-~~~~R~---~aa~~L~~i~~~~g~~----------------~l~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~ 1726 (2612)
.. +...+. .....++.++..++.. ..+.++|.+...+.. .+..+.+.++.+++.++..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 222233 3334456666655421 235567766665543 3678999999999999999
Q ss_pred hccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000051 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2612)
Q Consensus 1727 ~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~ 1806 (2612)
+|.+|.||++.+++.++..+..... ..++..+..++..++.+. .+.+.+ .+++..++
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~--~~~~~l---------------~~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE--GCKPLM---------------QQLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-------HHH---------------HHHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc--chHHHH---------------HHHHHHHH---
Confidence 9999999999999999888775332 224555555554443310 000000 00111100
Q ss_pred cCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHhcChhhHH--H
Q 000051 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--E 1881 (2612)
Q Consensus 1807 ~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~---~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~ 1881 (2612)
..++..+..+ ..+...++++.....+..+..+.|..+. +
T Consensus 781 ------------------------------------~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~ 824 (971)
T 2x1g_F 781 ------------------------------------QHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT 824 (971)
T ss_dssp ------------------------------------HHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT
T ss_pred ------------------------------------HHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 0001000000 0112567899999999999998887765 5
Q ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000051 1882 I-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2612)
Q Consensus 1882 ~-l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~ 1915 (2612)
. ++.+++..+..+..++......+...+..++..
T Consensus 825 ~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 6 788888888888766666666777788777655
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-16 Score=224.15 Aligned_cols=709 Identities=10% Similarity=0.099 Sum_probs=423.8
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-hC--
Q 000051 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR-- 1209 (2612)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~~-- 1209 (2612)
..+|....++|..+| |.+.+..+ +..|+.+..++..+.+. ..+-++|..++..|+..... +.
T Consensus 8 ~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~------------~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 8 AKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST------------NLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT------------TSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC------------CCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 344555557777777 56565444 66777666555544310 12346888888888877542 22
Q ss_pred -------CCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHH
Q 000051 1210 -------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2612)
Q Consensus 1210 -------~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~ 1282 (2612)
++....+-+.++ .++.+....||..+..++..++.....+.|+.++|.+.+.+...+ ...++++..
T Consensus 73 ~~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL~ 145 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVLT 145 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 122223444444 444445589999999999988887666789999999988886532 235677888
Q ss_pred HHHHHhhhhcc--CC----cc----hHhHHHHH-------HHhcCCCCH---HHH------HHHHhhhHHhHhhh-c---
Q 000051 1283 FTGALAKHLAK--DD----PK----VHAVVDKL-------LDVLNTPSE---AVQ------RAVSSCLSPLMQSM-Q--- 1332 (2612)
Q Consensus 1283 ~l~~La~~l~~--~~----~~----~~~i~~~L-------~~~L~~~~~---~Vq------~~~~~~L~~lv~~~-~--- 1332 (2612)
.+..+.+.... .. +. +....+.+ ...+.++.. .++ ..+.+++..+.... .
T Consensus 146 ~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 146 VAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 88888865431 11 11 12222222 223454422 122 23444443332111 1
Q ss_pred -chhHHHHHHHHHHhhcC--------C--C----hHHHHHHHHHHHHHHhhhCcchhhh--hcHHHHHHHHHhC----CC
Q 000051 1333 -DEAPTLVSRLLDQLMKS--------D--K----YGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLAD----RN 1391 (2612)
Q Consensus 1333 -~~~~~li~~ll~~L~~~--------~--~----~~~R~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~i~~----~~ 1391 (2612)
+....+++.++..+... + + +..|+.+..++..++...+.. +.. ..+++.+.+.+.+ ..
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~-f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDV-FGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcC
Confidence 12244554444444321 0 0 345778888888887654432 211 1344444444431 22
Q ss_pred CHHHHHHHHHHHHHHHHHh--cccch--hhHHHHH-HHHHHHcC-----------------------CCCHHHHHHHHHH
Q 000051 1392 SAKRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAECA 1443 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~--~~~~~--~~v~~il-p~ll~~l~-----------------------D~~~~VR~aa~~a 1443 (2612)
+...+..++..+..+++.- ...|. +++..++ +.++..+. +....+|.+|..+
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~ 384 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDF 384 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHH
Confidence 4566777777777766422 23454 7888888 67776552 1122578899999
Q ss_pred HHHHHHhhcHHhHHhHHHHHHhhhc------CCChhhHHHHHHHHHHHHhhC--ch-hhhh-----hhchh-HHHHhhhh
Q 000051 1444 ARAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVL 1508 (2612)
Q Consensus 1444 l~~i~~~l~~~~v~~ilp~Ll~~L~------~~~w~~r~~a~~~L~~ia~~~--p~-~l~~-----~L~~i-vp~L~~~L 1508 (2612)
++.++...+...+..+++.+.+.+. +.+|+.|.+|+.+++.++... ++ .... .+..+ ...+...+
T Consensus 385 L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l 464 (960)
T 1wa5_C 385 LKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (960)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh
Confidence 9999988876666677777766665 678999999999999998632 11 1111 12222 22345556
Q ss_pred cCC---CHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhh
Q 000051 1509 TDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585 (2612)
Q Consensus 1509 ~D~---~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l 1585 (2612)
+|+ ++.||..|+++++++++.+....+.. +++.+.+++
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~L 505 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATFL 505 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHHT
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHHh
Confidence 777 99999999999999987653222233 444555555
Q ss_pred cCCCHHHHHHHHHHHHHHhhccC---------CCCcchhhHhhhHHHHHHHhcCCC---HH--HHHHHHHHHHHHHhhhC
Q 000051 1586 RERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---PE--VRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1586 ~d~s~~vr~~a~~~l~~l~~~~~---------~~~~l~~~l~~ll~~L~~~L~d~~---~~--VR~~A~~aL~~L~~~~g 1651 (2612)
.+.+..+|..|+.++.+++.... ..+.+.||++.+++.+..++.... +. ....+..+++.++..++
T Consensus 506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 56667889999999999887432 134588999999999999998741 11 44688999999999888
Q ss_pred CC---CchhhHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHhChhh----HHhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1652 EE---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1652 ~~---~~~~ll~~L~~~L~~----~~~~~~R~~aa~~L~~i~~~~g~~~----l~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
++ ++..+++.+...+.. ......+.....+++.++...+++. .+.++|.+...+........+.++..+
T Consensus 586 ~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 586 DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 76 456677766655542 3344456677888988888766543 356777777777666667888888888
Q ss_pred HHhhhhhccchhhhHHhHHHHHH--hhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000051 1721 KYLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2612)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~iip~ll--~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~l 1798 (2612)
..+.... +.|.+|+..++|.++ ..+.... .+ ....+.+..++...++. ++ . +
T Consensus 666 ~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~--------~--~--------- 719 (960)
T 1wa5_C 666 AFVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FP--------D--L--------- 719 (960)
T ss_dssp HHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CS--------C--S---------
T ss_pred HHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HH--------H--H---------
Confidence 8888776 778889888999888 6555431 22 12223333322221110 00 0 0
Q ss_pred HHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhh
Q 000051 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2612)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2612)
+.++..+.....+.. .+..|..+++.++.+.|..
T Consensus 720 --------------------------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~ 753 (960)
T 1wa5_C 720 --------------------------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMN 753 (960)
T ss_dssp --------------------------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHH
T ss_pred --------------------------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHH
Confidence 001111111112222 2367888899999988877
Q ss_pred -HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhchhh-h--------hhHHH----HHhhhcCC-CChhHHHH
Q 000051 1879 -LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERV-L--------PSIIP----ILSRGLKD-PSASRRQG 1942 (2612)
Q Consensus 1879 -l~~~l~~ll~~L~~~L~~~-~~~~R~~A~~aL~~lv~~~~~~~-l--------~~llp----~L~~~L~d-~~~~vR~~ 1942 (2612)
+.+|++.+++.++..+... ....+......+..++-..++.. . ..+.. .+...+.. .+..-|.-
T Consensus 754 ~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~ 833 (960)
T 1wa5_C 754 RLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKI 833 (960)
T ss_dssp HHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHH
Confidence 9999999999999998755 45555455555555544444431 1 11112 22222221 34566777
Q ss_pred HHHHHHHHHHhhC--hhhHHHhHhHHHHHHHHHhc
Q 000051 1943 VCIGLSEVMASAG--KSQLLSFMDELIPTIRTALC 1975 (2612)
Q Consensus 1943 a~~aL~~li~~~~--~~~l~~~l~~ll~~l~~~L~ 1975 (2612)
++.++..++.... +..+.+.+..++..+...+.
T Consensus 834 ~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 834 ALIGVLNMVINGQFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHh
Confidence 8888888776431 23334455666666655554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-17 Score=220.07 Aligned_cols=391 Identities=16% Similarity=0.240 Sum_probs=299.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh-----------
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG----------- 1649 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~----------- 1649 (2612)
..+.+++..+|+.|.+.+..+... + .+..+..+...+.+ ..+.+|..|+..|..++..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~-----~----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE-----N----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh-----C----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 344566789999999999886541 0 22344455555544 3789999999999998743
Q ss_pred ----hCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh-hHHhHhHHHHHhccCC--ChhhHhHHHHHHHH
Q 000051 1650 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 1722 (2612)
Q Consensus 1650 ----~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-~l~~llp~l~~~~~~~--~~~vR~~~~~~l~~ 1722 (2612)
++++....+...++..+.++... . ..++.+++.++...++. .+++++|.+++.+.+. ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 22223345666777777766544 4 67888999998887664 7889999999999888 89999999999999
Q ss_pred hhhhh-ccchhhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc----h-hhhhHHHHhhccCCCchHHHHH
Q 000051 1723 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQS 1794 (2612)
Q Consensus 1723 L~~~~-g~~f~p~l~~iip~ll~~L~d~--~~~VR~~Al~al~~lv~~~~~~----~-i~~llp~L~~~l~d~~w~vR~~ 1794 (2612)
++..+ +..+.+|++.+++.++.++.|+ +..||..|++++..++..+... . .+.+++.+.+...+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99877 6678899999999999999998 7899999999998765432211 1 1336777777788889999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~-~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
+++.++.+....+.. ++ ++.. .+++.+.....|.+..||..|+..|..++.
T Consensus 237 ~~~~l~~l~~~~~~~---------------------------~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQY---------------------------ME-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGG---------------------------CT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------------HH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 999999987543211 00 1122 344445555678889999999999999886
Q ss_pred cC---------------------hhhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhchhhhhhHH
Q 000051 1874 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1925 (2612)
Q Consensus 1874 ~~---------------------~~~l~~~l~~ll~~L~~~L~~-------~~~~~R~~A~~aL~~lv~~~~~~~l~~ll 1925 (2612)
.. ...++++++.++|.++..+.+ .++..|..|..+|+.++...|..+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123445678888888888853 35689999999999999999988899999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----h
Q 000051 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 2000 (2612)
Q Consensus 1926 p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~-----~ 2000 (2612)
|.+...++++++.+|.+++.+++.+...+.+..+.++++.++|.+...+.|+++.||.+|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999987765545567788999999999999999999999999999999887653 3
Q ss_pred hhhhHHHHHHhc
Q 000051 2001 IDEIVPTLLHAL 2012 (2612)
Q Consensus 2001 ~~~ilp~Ll~~L 2012 (2612)
+++++|.++..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 455555555444
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-17 Score=218.10 Aligned_cols=395 Identities=13% Similarity=0.143 Sum_probs=294.2
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000051 1132 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2612)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~--- 1207 (2612)
+..++..+.++|..+|+.|.+.|..+... .|+.+..++..+.+ . +.+..+|..++..|+.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-------~-----~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc-------C-----CCChHHHHHHHHHHHHhccccch
Confidence 34677778899999999999999876543 44444444433321 0 23468999999999987531
Q ss_pred ------------hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-chhhhhHHHHHHHhccCCCChHHhh
Q 000051 1208 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2612)
Q Consensus 1208 ------------~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~-~~~~~Llp~~~~~l~~~~~~~~~~d 1274 (2612)
++++....+...++ ..+.+.++.| ..+..++..+....+. ..|+.++|.+.+.+.... .+.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~----~~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN----STE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT----CCH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC----CCH
Confidence 22222334555554 5677877788 7888888888777655 479999999988887521 034
Q ss_pred hHHhHHHHHHHHHhhhhcc--CCcchHhHHHHHHHhcCCC--CHHHHHHHHhhhHHhHhhhcchh-----HHH-HHHHHH
Q 000051 1275 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PTL-VSRLLD 1344 (2612)
Q Consensus 1275 ~vr~~~i~~l~~La~~l~~--~~~~~~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~~-----~~l-i~~ll~ 1344 (2612)
.+|+++...++.+++.... ..+..+.+++.+...+.++ +++||..+++|+..++....+.. ..+ ++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~- 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC- 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-
Confidence 6789999999999876522 2466788999999999998 79999999999988765443211 122 33333
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh------------
Q 000051 1345 QLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 1410 (2612)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~------------ 1410 (2612)
.+..+.+...|..++.+|..++...+..... -. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445556789999999999999866532111 12 5777777777776 7899999999999988753
Q ss_pred ---------cccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh
Q 000051 1411 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
...+.+++..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456778999999998853 3458999999999999998886566888898889999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-----hhHhhHHHHHHhhc
Q 000051 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~ivp~Ll~~l 1546 (2612)
|.+++.+++.++.++. +.+..+++.++|.+...++|+++.||.+|+++|+++++.+++ +++..++|.|++.+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999998654 667788999999999999999999999999999999987754 45667777776654
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-13 Score=199.63 Aligned_cols=752 Identities=14% Similarity=0.124 Sum_probs=447.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhh----C
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGM----G 1651 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~~----g 1651 (2612)
+...+.......+++.|+.|.+.+..+-.. | + ..+.+..++. +.++.+|..|+..|...+... .
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p-~-------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~ 94 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVS---P-Q-------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIP 94 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T-T-------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H-H-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCC
Confidence 334444434456788999999999887652 1 1 2233333443 567899999999999888642 3
Q ss_pred CCCchhhHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-----CChhhHhHHHHHHHHhh
Q 000051 1652 EENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFKYLP 1724 (2612)
Q Consensus 1652 ~~~~~~ll~~L~~~L~~~--~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-----~~~~vR~~~~~~l~~L~ 1724 (2612)
++....+-..+++.+... .+..+|...+.+++.++....++.++++++.+.+.+++ +++..++.++.+|..++
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 333344444555555442 24678999999999999887777788999999988765 36668899999999888
Q ss_pred hhh-------------ccchhhhHHhHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhchh--hhhHHHHhhccCCC
Q 000051 1725 RSL-------------GVQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIFND 1787 (2612)
Q Consensus 1725 ~~~-------------g~~f~p~l~~iip~ll~~L~d~~~--~VR~~Al~al~~lv~~~~~~~i--~~llp~L~~~l~d~ 1787 (2612)
... .+.+..+++.+++.+...+.+... .++..+++++...+. .+.... ..++|.+.+.+.
T Consensus 175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~-- 251 (963)
T 2x19_B 175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ-- 251 (963)
T ss_dssp HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--
Confidence 533 223456677788877777765432 477778777765544 322221 446676666663
Q ss_pred chHHHHHHHHHHHHHHHHhcCCc-ccc-------ccc-------CCCCCCccchHHHHHHHHHH-------h-----Chh
Q 000051 1788 NWRIRQSSVELLGDLLFKVAGTS-GKA-------LLE-------GGSDDEGASTEAHGRAIIEV-------L-----GRD 1840 (2612)
Q Consensus 1788 ~w~vR~~a~~ll~~ll~~~~~~~-~~~-------~~~-------~~~ddd~~~~~~~~~~l~~~-------L-----g~~ 1840 (2612)
+|..|..+++.+..++..-.+.. .+. ... ...++|........+.+... + ..+
T Consensus 252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 331 (963)
T 2x19_B 252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ 331 (963)
T ss_dssp STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH
Confidence 67889999999888874210000 000 000 00011111111111111111 1 112
Q ss_pred hHHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHHhcC-----------hhhHHHHHHHHHHHHHHHhcCCCH-----
Q 000051 1841 KRNEVLAALYMVRSD-----VSLSVRQAALHVWKTIVANT-----------PKTLKEIMPVLMNTLISSLASSSS----- 1899 (2612)
Q Consensus 1841 ~~~~vl~~L~~~~~D-----~~~~VR~aA~~~l~~l~~~~-----------~~~l~~~l~~ll~~L~~~L~~~~~----- 1899 (2612)
.+..++..+..+..+ .+..++..++..|..++... ...+.++++.+++.++..+..++.
T Consensus 332 ~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~ 411 (963)
T 2x19_B 332 SFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411 (963)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 333455555544432 35567889999999987721 134567888888888888753322
Q ss_pred ----------HHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc----CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhH
Q 000051 1900 ----------ERRQVAGRALGELVRKLGERVLPSIIPILSRGL----KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2612)
Q Consensus 1900 ----------~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L----~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2612)
..|..+..++..++...+..+++.+++.+...+ .+.+|..|.+++.+++.+...+.. ...++++.
T Consensus 412 ~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-~~~~~l~~ 490 (963)
T 2x19_B 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-NYSDVVPG 490 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-SCCSHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-hhhHHHHH
Confidence 226677778888888888777888888887777 667899999999999998766543 22356666
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchh
Q 000051 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2612)
Q Consensus 1966 ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~ 2043 (2612)
+++.+. .+.++++.||..++.+++++.+..+ ...+..+++.++..|.+
T Consensus 491 l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~----------------------------- 540 (963)
T 2x19_B 491 LIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN----------------------------- 540 (963)
T ss_dssp HHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC-----------------------------
T ss_pred HHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-----------------------------
Confidence 666443 3455688899999999998876543 22344445544444422
Q ss_pred hccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC--CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhc
Q 000051 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV 2121 (2612)
Q Consensus 2044 L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~--~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l 2121 (2612)
+.+...++.++..+++.++..+.||++.++..+...+.. -+...+..+.++++.++...+.+
T Consensus 541 ---~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~------------- 604 (963)
T 2x19_B 541 ---PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE------------- 604 (963)
T ss_dssp ---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH-------------
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH-------------
Confidence 122334566777777766777778888877777776643 23455666666666655443322
Q ss_pred CCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHh----c-CCChhHHH---HHHHHHHHHHhhcCccccccHH
Q 000051 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL----S-DSDSTTVA---AAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2122 ~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll----~-d~d~~V~~---~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
+..+|+..+++.+...+ + ..+++.+. ...++++.+.+......-.. +
T Consensus 605 ------------------------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~-~ 659 (963)
T 2x19_B 605 ------------------------EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED-D 659 (963)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc-c
Confidence 22333333333333222 1 11333333 34555666655543211000 0
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCC--CCcCchhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcChhhhhhch
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFC--LPKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~--~p~~l~~ilp~l~~~L~~--~~~~~r~~aa~~L~~li~~~~~~~l~p~v 2269 (2612)
. + .+... +. .-+... .......++|.+...+.. .+.++.+.++.+++.++...+ +.+.||+
T Consensus 660 ~---~----~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~-~~~~~~l 724 (963)
T 2x19_B 660 H---E----GPELR-----KL--PVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL-DDFAPMV 724 (963)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-STTGGGH
T ss_pred c---c----ccccc-----cC--CCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc-ccccccH
Confidence 0 0 00000 00 000000 001234567776665542 467889999999999998888 6788998
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH--hcCCCccCchHHHHHHHHHH----h-cC--CCHHHHHHHHHHHHHH
Q 000051 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIR--KGGIALKPFLPQLQTTFIKC----L-QD--STRTVRSSAALALGKL 2340 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~--~~~~~l~p~lpqL~~~~~k~----L-~d--~~~~vR~~Aa~aLg~L 2340 (2612)
+.+..+++....... ....+.+++.++. +.+..+.++++++...++.+ + .+ ..+++|......++.+
T Consensus 725 ~~~~~~l~~~~~~~~----~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~ 800 (963)
T 2x19_B 725 PQLCEMLGRMYSTIP----QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800 (963)
T ss_dssp HHHHHHHHHHHHHSC----CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHH
Confidence 888887776654311 1356777888877 44544667777766655554 2 34 3699999999999998
Q ss_pred Hhcc-------CC-hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCc-----ChHHHHHHHHHHHHhhcCC-CHH
Q 000051 2341 SALS-------TR-VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV-----SSAVKIRVYSVLKDLVYHD-DDH 2406 (2612)
Q Consensus 2341 ~~~~-------~~-~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~-----~~~~~~~i~~~L~~~l~~~-~~~ 2406 (2612)
+... +. +..+++.++.+++..+..+..++++.|.+++...+..- -..+...++..+...+.+. ...
T Consensus 801 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 880 (963)
T 2x19_B 801 LKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRS 880 (963)
T ss_dssp HHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGG
T ss_pred HHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 6432 33 67788888888888888999999999999987654211 0123344444444444332 222
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 000051 2407 VRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2612)
Q Consensus 2407 vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2612)
.....+.+|..+....+ +.+..++...
T Consensus 881 ~~~~~~~il~~l~~~~~-~~~~~~l~~~ 907 (963)
T 2x19_B 881 LMDCFADILFALNKHCF-SLLSMWIKEA 907 (963)
T ss_dssp GHHHHHHHHHHHHHHSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCh-HHHHHHHHHH
Confidence 23445556655554443 2334444433
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-15 Score=216.74 Aligned_cols=752 Identities=11% Similarity=0.083 Sum_probs=421.5
Q ss_pred HHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HH
Q 000051 1049 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DI 1120 (2612)
Q Consensus 1049 ~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~ 1120 (2612)
++..-.+-+++.++|+++++|++..|++|++.|++.... |....+...+. ..+.+..+|.+|. ..
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 8 DFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhh
Confidence 344445557889999999999999999999999876321 22222333322 2345666776654 35
Q ss_pred HHhcCCCCCCCh-HhHHHhhcCC---------CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCC
Q 000051 1121 WDRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2612)
Q Consensus 1121 w~~~~~~~~~~~-~~Ll~~l~~~---------~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1189 (2612)
|...+.+-...+ ..++..+.+. +..+|++.+++++.++. .||+.|++++..+.+... .
T Consensus 81 W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~------- 149 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------- 149 (1049)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T-------
T ss_pred CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c-------
Confidence 654332222234 5666666532 47899999999999875 589899998888887641 1
Q ss_pred CcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCC
Q 000051 1190 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269 (2612)
Q Consensus 1190 ~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~ 1269 (2612)
+-..+..+..+|..+++.+.+-.. .+....-|....+ .+. ...+.+++.+...+... .
T Consensus 150 ~~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk~----~l~----~~~~~i~~~~~~~l~~~-~- 207 (1049)
T 3m1i_C 150 SVNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLKN----SMS----KEFEQIFKLCFQVLEQG-S- 207 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHC-C-
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHHH----HHH----HHHHHHHHHHHHHHHhc-C-
Confidence 113466777777777654322100 0111111111111 111 12455666666666542 1
Q ss_pred hHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhh-cch-------hHHHHHH
Q 000051 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSR 1341 (2612)
Q Consensus 1270 ~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~-~~~-------~~~li~~ 1341 (2612)
...++..+...++....+.+........+++.+.+.+. .+++++.++.+|+..++... ++. ...+++.
T Consensus 208 ---~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~ 283 (1049)
T 3m1i_C 208 ---SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN 283 (1049)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence 13455566666655444443110001224444442221 26889999999998888652 111 1122233
Q ss_pred HHHHhhc---------------C--CChHHHHHHHHHHHHHHhhhC-----cchhhh--hcHHHHHHHHHhCCCCHHHHH
Q 000051 1342 LLDQLMK---------------S--DKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRRE 1397 (2612)
Q Consensus 1342 ll~~L~~---------------~--~~~~~R~~Aa~~L~~l~~~lg-----~~~l~~--~~i~~~L~~~i~~~~~~~~R~ 1397 (2612)
+++.+.. . .+.......+..+..+..... ...... ..+++.+..+...+ +..++.
T Consensus 284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~ 362 (1049)
T 3m1i_C 284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFK 362 (1049)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHH
T ss_pred HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHH
Confidence 3333211 1 122233344444444333211 000110 13556666666665 677888
Q ss_pred HHHHHHHHHHHHh------cccchhhHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHH
Q 000051 1398 GALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMS 1449 (2612)
Q Consensus 1398 ~Al~al~~L~~~~------~~~~~~~v~~ilp~ll~~l~D~-------------------~---~~VR~aa~~al~~i~~ 1449 (2612)
.++..+..+++.+ ...+.+++..+++.++..+.-+ + ...|+++..++..+..
T Consensus 363 ~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~ 442 (1049)
T 3m1i_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH 442 (1049)
T ss_dssp HHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc
Confidence 8888888887732 2456788899999998876321 0 1346677888888875
Q ss_pred hhcHHhHHhHHHHHHhhhc--CCChhhHHHHHHHHHHHHhhCchhhh-hhhchhHHHHhhhhc-----CCCHHHHHHHHH
Q 000051 1450 QLSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQT 1521 (2612)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~ia~~~p~~l~-~~L~~ivp~L~~~L~-----D~~~~VR~aA~~ 1521 (2612)
..+...+..+++.+-+.+. +.+|+.+.+++.++|.++.+...... ..++.+++.+..+.. |+++.||..+++
T Consensus 443 ~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~ 522 (1049)
T 3m1i_C 443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMY 522 (1049)
T ss_dssp HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 5554455666666666664 46899999999999999877655433 347888888777543 467788878999
Q ss_pred HHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000051 1522 ALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2612)
Q Consensus 1522 aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~ 1601 (2612)
+++++++.+.+. ...+..+++.+..++.+.++.++..|+.++.
T Consensus 523 ~lgry~~~~~~~-------------------------------------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 523 VVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-------------------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999888654310 1123345555666677777888999999998
Q ss_pred HHhhccCC------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhccCCCHHH
Q 000051 1602 NMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVE 1674 (2612)
Q Consensus 1602 ~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~-~~~~~ll~~L~~~L~~~~~~~~ 1674 (2612)
.++..... +.++.||++.++..+..++.+...+-+....++++.++...++ +....++..++..+.
T Consensus 566 ~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~------- 638 (1049)
T 3m1i_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN------- 638 (1049)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH-------
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------
Confidence 88875431 1223499999999999999887777788889999999987763 222222222222110
Q ss_pred HHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCC-Chh-hHh--HHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC
Q 000051 1675 RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VRD--GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1675 R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~-~~~-vR~--~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
+.+..+. .......... ++. ++. ..+.++..++..+|..|.|++..+++.++..+..
T Consensus 639 -----~~~~~~~------------~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~-- 699 (1049)
T 3m1i_C 639 -----MAWDTIV------------EQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA-- 699 (1049)
T ss_dssp -----HHHHHHH------------HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH--
T ss_pred -----HHHHHHH------------HHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--
Confidence 0011111 0000000000 111 121 3356788888999999999988877765432211
Q ss_pred hhHHHHHHHHHHHHHHHhhhc--------hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000051 1751 ESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~--------~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd 1822 (2612)
. ...+...+...|.. ....+.|.+. .++..+....
T Consensus 700 -----~-~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~---------------~ll~~~~~~~---------------- 742 (1049)
T 3m1i_C 700 -----V-SSMISAQVAAEGLIATKTPKVRGLRTIKKEIL---------------KLVETYISKA---------------- 742 (1049)
T ss_dssp -----H-HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHH---------------HHHHHHHHHC----------------
T ss_pred -----H-HHHHHHHHHccCchhhhhHHHHHHHHHHHHHH---------------HHHHHHHHhC----------------
Confidence 0 00011101101110 0011111111 1222222110
Q ss_pred ccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHh----c--
Q 000051 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSL----A-- 1895 (2612)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR-~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L----~-- 1895 (2612)
...+.. .. .+.+.++..+...........| ..++.+++.++...+..+.++++.+++.+..+. .
T Consensus 743 -~~l~~~----~~----~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~ 813 (1049)
T 3m1i_C 743 -RNLDDV----VK----VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD 813 (1049)
T ss_dssp -SCHHHH----HH----HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -CCHHHH----HH----HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 000000 00 0111222222111000000100 346667777777666666777777777766653 2
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhchhh-------hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1896 -SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1896 -~~~~~~R~~A~~aL~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
+.++++|......++.++.+....+ +..++.....++..+++.+...++..+.+++...
T Consensus 814 ~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 814 FTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 4679999999999999998765543 2344445556777888888888888877776643
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-14 Score=195.11 Aligned_cols=633 Identities=12% Similarity=0.085 Sum_probs=401.8
Q ss_pred CChhhHhHHHHHHHHhhhhh-ccchhhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhch---hhh-hHHHHh
Q 000051 1708 QRASVRDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS---LPL-LLPAVE 1781 (2612)
Q Consensus 1708 ~~~~vR~~~~~~l~~L~~~~-g~~f~p~l~~iip~ll~~L~d-~~~~VR~~Al~al~~lv~~~~~~~---i~~-llp~L~ 1781 (2612)
.+.+-|+.++.=+..+++-- |.+. -|-..-+..+.+.+.. .++++.-+|++.+..+++...... +.. =.|.+.
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~ 98 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAEL-LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFM 98 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred cCHHHHHHHHhhceeeeccccchHH-HHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHH
Confidence 44556666666666666432 2210 1112234556666666 678899999999988886553321 111 245566
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHcc--CCCHH
Q 000051 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLS 1859 (2612)
Q Consensus 1782 ~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~--D~~~~ 1859 (2612)
+.+..++...-.+++.++..++..++|...+.. .-.| .++++.- ....+.++..|..... -.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 99 RVLDQKHENCVSTAQFCLQTILNALSGLKNKPD----SKPD--------KELCTRN-NREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT----CCCC--------HHHHHHT-HHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhccccccc----cCCc--------HHHHhhh-hhHHHHHHHHHHHHhhccccChh
Confidence 677778888888888899988888765422110 0011 1121111 1123345555554443 45788
Q ss_pred HHHHHHHHHHHHHhcCh-hhHHHHHHH-HHHHHHHHhc---CC--------CHHHHHHHHHHHHHHHHHhc-----hhhh
Q 000051 1860 VRQAALHVWKTIVANTP-KTLKEIMPV-LMNTLISSLA---SS--------SSERRQVAGRALGELVRKLG-----ERVL 1921 (2612)
Q Consensus 1860 VR~aA~~~l~~l~~~~~-~~l~~~l~~-ll~~L~~~L~---~~--------~~~~R~~A~~aL~~lv~~~~-----~~~l 1921 (2612)
.|..+++.+-..+.... +....++.. -+..++.... +. .++.|..+.-++..+...++ +.+.
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~ 245 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT 245 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 99999999877765331 111111110 1122222212 11 45799999999999998887 3344
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHh-HhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh--
Q 000051 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-- 1998 (2612)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~-l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~-- 1998 (2612)
..+-..+...+...+.+.+..+++++..++.......-.-+ ....++.+...+..+++.++..|..+++.+......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~ 325 (810)
T 3now_A 246 DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAK 325 (810)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHH
Confidence 55555555666677888888899999988654322211222 257889999999999999999999999886432111
Q ss_pred hhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC-----hh-hhH
Q 000051 1999 QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-----LN-FHL 2072 (2612)
Q Consensus 1999 ~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~-----l~-~~l 2072 (2612)
...+.-+|.|...+.+++.. ++.+++.+|..++...+.+ +. .-+
T Consensus 326 ~I~~~gv~~L~~Ll~s~~~~------------------------------vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 326 ALCEQGVDILKRLYHSKNDG------------------------------IRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp TTHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHHHcCcHHHHHHHcCCCHH------------------------------HHHHHHHHHHHhccccccCccccchhhccH
Confidence 01122246666555543310 1112233333333221211 11 125
Q ss_pred hhHHHHHHHhcCCC--CHHHHHHHHHHHHHhhhhccc-cc-H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 000051 2073 GTILPALLSAMGDD--DMDVQSLAKEAAETVTLVIDE-EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2612)
Q Consensus 2073 ~~il~~Ll~~L~~~--~~~vr~~a~~al~~l~~~~~~-~~-l--~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~ 2146 (2612)
..+++.+.+.|.++ ++++|+.+++++..+....+. .. . ..++|.|+..++++++.++..++.+|+++.......
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhh
Confidence 67788888888666 889999999999988653321 11 1 368888999998889999999999999998743100
Q ss_pred -----------hh-------------ccH---------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHH
Q 000051 2147 -----------LV-------------DEA---------PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2147 -----------~~-------------~~~---------~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
+. ++. ...++.|+.++..+++.++..|..+|..+.... +
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~--~------ 527 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK--E------ 527 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH--H------
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--H------
Confidence 00 011 146888999999999999999999999997421 1
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhh--chhh
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE--FVIP 2271 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p--~v~~ 2271 (2612)
.++.+.. ...+|.|+..+.++++..|+.|+.+|+.++....+....+ .+..
T Consensus 528 --~r~~Vv~-------------------------~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~ 580 (810)
T 3now_A 528 --LRGKVVQ-------------------------EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580 (810)
T ss_dssp --HHHHHHH-------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHH
T ss_pred --HHHHHHH-------------------------CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhc
Confidence 1222211 1247888888889999999999999999997765433211 1345
Q ss_pred hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC-ch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCh--
Q 000051 2272 ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP-FL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV-- 2347 (2612)
Q Consensus 2272 i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p-~l-pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~-- 2347 (2612)
.++||+..+....+...+..++.+|..|+...+. .+. .+ ...++.+...+.++++.+|..|+.++++|+......
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 7899999997432334456788899888753211 111 11 124566777788889999999999999996532111
Q ss_pred ----hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 2348 ----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK--IRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2612)
Q Consensus 2348 ----~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~--~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2612)
...++.|+..+...+..+|..+.+||..+........ .... ...++.|..++.+.+..++..++.+++.++..
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 2357788888888889999999999999986422111 1222 34667888889999999999999999999873
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-13 Score=186.16 Aligned_cols=680 Identities=13% Similarity=0.047 Sum_probs=425.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhcChhhHHHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchhh----hhhHHHH
Q 000051 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERV----LPSIIPI 1927 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~-~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~----l~~llp~ 1927 (2612)
...+.+-|+.|+.-+-.++....+. +.++. .-+..+...+.+ .+++....|.++++.+|..-.... ..-=.|.
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~ 96 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGA-ELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPW 96 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHH-HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred cccCHHHHHHHHhhceeeeccccch-HHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHH
Confidence 3445667888888777776532221 12221 224455555665 789999999999999997543332 1222355
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChh--------------hHHHhHhHHHHHHHHHhcCC--cHHHHHHHHHHHHH
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKS--------------QLLSFMDELIPTIRTALCDS--ILEVRESAGLAFST 1991 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~--------------~l~~~l~~ll~~l~~~L~D~--d~~Vr~~A~~al~~ 1991 (2612)
+...+..++.++-.++|..+..++....+. .-...+..++..+..++.|. ....|+++...+-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~- 175 (810)
T 3now_A 97 FMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELIT- 175 (810)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHH-
Confidence 666677788888888998888777655321 11235677888888888876 5778888766543
Q ss_pred HHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC-hhh
Q 000051 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNF 2070 (2612)
Q Consensus 1992 l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~-l~~ 2070 (2612)
+++........ ..|.. ...+..+-++.+.-.+.-.+.-+|. +...+...+-++..+-+..+.+ -..
T Consensus 176 --~~~~~~~~~~~-~~~~~--------~~g~~~~l~v~~~~~~~~~~~~~~~--~~~~r~~~~~~l~~~~~~~~~~~~~~ 242 (810)
T 3now_A 176 --RNVHYTALEWA-ERLVE--------IRGLCRLLDVCSELEDYKYESAMDI--TGSSSTIASVCLARIYENMYYDEAKA 242 (810)
T ss_dssp --HHTTCTTTTHH-HHHHH--------TTHHHHHHHHHTCCSSSCCSSCCCC--CTTHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred --HhCCccccccc-cchhh--------HhhHHHHHHHHhcCccccccccCCC--ChhHHHHHHHHHHHHHHHhccchhHH
Confidence 44332211100 01111 1233344444322111111111110 1111122333444444444421 123
Q ss_pred hHhhHHHHHHH-hcCCCCHHHHHHHHHHHHHhhhhccccc-----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcc
Q 000051 2071 HLGTILPALLS-AMGDDDMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2612)
Q Consensus 2071 ~l~~il~~Ll~-~L~~~~~~vr~~a~~al~~l~~~~~~~~-----l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~ 2144 (2612)
.+...+..++. .+...+.+-.-.+.+++..++....+.+ -...++.++..+.+++..++..|+++++..+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~- 321 (810)
T 3now_A 243 RFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK- 321 (810)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH-
T ss_pred HHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc-
Confidence 33344444443 3456666667778888888876442211 2357788888888999999999999999986542
Q ss_pred cchhcc-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCC
Q 000051 2145 LYLVDE-APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223 (2612)
Q Consensus 2145 ~~~~~~-~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~ 2223 (2612)
+...+ ...-++.|..++.+.+..++..|..+|..+......+. ..+-|.
T Consensus 322 -~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~----------------------------~~~~~~- 371 (810)
T 3now_A 322 -DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDA----------------------------AIRPFG- 371 (810)
T ss_dssp -HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTT----------------------------SCCSST-
T ss_pred -HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCc----------------------------cccchh-
Confidence 11111 11223788888888888888888888877753211000 011111
Q ss_pred CcCchhhHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhcChhhhhhc-h--hhhhHHHHHHhcCCCCHhHHHHHHHHHHH
Q 000051 2224 PKALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEF-V--IPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2612)
Q Consensus 2224 p~~l~~ilp~l~~~L~~~--~~~~r~~aa~~L~~li~~~~~~~l~p~-v--~~i~~pLi~~l~~~~~~~vk~~al~~L~~ 2298 (2612)
..++.+++|.|.+.|.++ ++++++.|+.+|+.+.... ..+.. + ..++++|+..+... +..+...++.+|+.
T Consensus 372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~---~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~N 447 (810)
T 3now_A 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA---ECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVN 447 (810)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH---HHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 123567888999999887 8899999999999997543 23322 2 35678899999864 67899999999999
Q ss_pred HHHhcCCC------------ccC------------chH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Q 000051 2299 IIRKGGIA------------LKP------------FLP---------QLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345 (2612)
Q Consensus 2299 L~~~~~~~------------l~p------------~lp---------qL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~ 2345 (2612)
|....... ... +.. ..++.|+..+..+++.+|..|+.+|+.++....
T Consensus 448 Lt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~ 527 (810)
T 3now_A 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE 527 (810)
T ss_dssp HTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH
T ss_pred HcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 98743110 001 111 357889999999999999999999999965322
Q ss_pred Chh-----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCc--ChHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 000051 2346 RVD-----PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD-DDHVRVSAASILGI 2417 (2612)
Q Consensus 2346 ~~~-----~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~~Lg~ 2417 (2612)
+.+ ..++.|+..+++++...|..+.+||..+........ .......++..|..++.+. +...+..++.+|+.
T Consensus 528 ~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 222 247888999988888899999999999876533211 1111234667777887754 44455678889998
Q ss_pred HHhhCChhHHHH-----HHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchh--HHHHHHHHhhhccCChhHHH
Q 000051 2418 MSQCMEDGQLAD-----LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF--LSILDRLKSSLKDEKFPLRE 2490 (2612)
Q Consensus 2418 L~~~~~~~~~~~-----~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~--~~i~~~l~~~~~~~~~~ir~ 2490 (2612)
|+..-+ +.... .++.+...+.+++..++..+..+++.+.... +.. ..+. ...++.+...+.+++..++.
T Consensus 608 La~~~d-~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~--~~~v~~~g~l~~Lv~LL~s~d~~vq~ 683 (810)
T 3now_A 608 LASMNE-SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVI--KMFEGNNDRVKFLALLCEDEDEETAT 683 (810)
T ss_dssp HTTSCH-HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHH--HHHHSSSSHHHHHHHGGGCSSHHHHH
T ss_pred HhcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHH--HHHHhccCcHHHHHHHhcCCCHHHHH
Confidence 886532 21111 1222222223445556777888888876532 211 1111 13677888888889999999
Q ss_pred hHHHHHHHHHhhhhccCCCCchhh---HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH-hHHHHHHHhhh
Q 000051 2491 ASTKALGRLLLHQIQSGPANTTVV---VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECL 2566 (2612)
Q Consensus 2491 ~a~~alg~ll~~~~~~~~~~~~~l---~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l-~~l~p~l~~~~ 2566 (2612)
.|..|++.+....... ...+ ...+++++..+.+++.++|+.|+.++..++...++...-.. ...+|+|.+.+
T Consensus 684 ~Aa~ALanLt~~s~~~----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 684 ACAGALAIITSVSVKC----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHHHHHHHHHHHCHHH----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSC
T ss_pred HHHHHHHHHhCCCHHH----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998742110 0122 24778888889999999999999999999986654432222 45789999998
Q ss_pred cCC---cchhhhhHHHHHHHHhcccccc
Q 000051 2567 KDG---STPVRLAAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2567 ~~~---~~~vk~aae~~~~~~~~~~~~~ 2591 (2612)
+.+ +..|...|.+|+..+++...-+
T Consensus 760 ~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 760 QLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred hCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 754 6779999999999988775543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-13 Score=192.72 Aligned_cols=746 Identities=11% Similarity=0.110 Sum_probs=410.0
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCC--chHHHHHHHHHHHhcCCCCCCC
Q 000051 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDP--EKSVAEAAEDIWDRYGYDFGTD 1131 (2612)
Q Consensus 1056 ~~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~w~~~~~~~~~~ 1131 (2612)
.+++.+.++.+++| |+..|.+|.+.|++.... |....+...+. ..+. +..++-.|....+..=-.++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIF--SEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--TCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 35667777767777 689999999999876421 11112222222 1222 5666766654443210023322
Q ss_pred --------h-HhHHHhhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000051 1132 --------Y-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2612)
Q Consensus 1132 --------~-~~Ll~~l~-----~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2612)
+ ..++..+. .....+|.+.+.+++.++. .||+.|+..+..+.+..... +.-..-..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~ 148 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNF 148 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHH
Confidence 3 44555443 2467899999999999864 68999998888888765321 01001111
Q ss_pred HHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-chhhhhHHHHHHHhccCCCChHHhhh
Q 000051 1197 IALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2612)
Q Consensus 1197 ~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~-~~~~~Llp~~~~~l~~~~~~~~~~d~ 1275 (2612)
....+..+.+.+.+.... .+....-|..- ..+.+....- ...+..+.++.++... ..+.
T Consensus 149 ~LriL~~i~EEv~~~~~~-----------~~~~~~~r~~~---lkd~m~~~~~~~i~~~~~~iL~~~~~~------~~~~ 208 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVL-----------KTDVQIQKDNL---VKDAIRANDMSDIVSFVYEMMLAYSNA------KNYG 208 (980)
T ss_dssp HHHHHHHHHHHHCCCCSC-----------CCHHHHHHHHH---HHHHHHHHTHHHHHHHHHHHHHHHHHT------TCHH
T ss_pred HHHHHHHhHHHHHhcccc-----------cCHHHHhhhHH---HHHHHHhccHHHHHHHHHHHHHHHhcc------CCHH
Confidence 222222222322221100 00001112110 1111111110 0122333334443321 1223
Q ss_pred HHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch--hHHHHHHH-----HHHhhc
Q 000051 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRL-----LDQLMK 1348 (2612)
Q Consensus 1276 vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~--~~~li~~l-----l~~L~~ 1348 (2612)
++..+...++....+++...-.-..+++.+...+.+ +++|.++++||..++...... ..+++..+ +..+..
T Consensus 209 l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~ 286 (980)
T 3ibv_A 209 TVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQE 286 (980)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhc
Confidence 444444444443333221100014677888888876 799999999999888654321 11222221 111111
Q ss_pred -CCChHHHHHHHHHHHHHHhh---h--Cc------------chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000051 1349 -SDKYGERRGAAFGLAGVVKG---F--GI------------SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2612)
Q Consensus 1349 -~~~~~~R~~Aa~~L~~l~~~---l--g~------------~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~ 1410 (2612)
.+|.+.+++-++.+..+... . .+ ..+ ..+++.+..+..++ +..+-..++..+..+.+..
T Consensus 287 ~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~~ 363 (980)
T 3ibv_A 287 QSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVSL 363 (980)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHHH
Confidence 34444444333333222211 0 11 111 15677777777776 4555554444444444321
Q ss_pred ---------cccchhhHHHHHHHHHHHcCCC------C----------HHHHHHHHHHHHHHHHhhcHHhH-H----hHH
Q 000051 1411 ---------GRLFEPYVIQMLPLLLVAFSDQ------V----------VAVREAAECAARAMMSQLSAQGV-K----LVL 1460 (2612)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D~------~----------~~VR~aa~~al~~i~~~l~~~~v-~----~il 1460 (2612)
...+.+++..+++.++..+.-+ + ...|+... .+..+...+.+..+ . .+.
T Consensus 364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~ 442 (980)
T 3ibv_A 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAIT 442 (980)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHH
Confidence 2335678888888888876521 1 13566655 55555555555543 3 333
Q ss_pred HHHHhhhc---CCChhhHHHHHHHHHHHHhhCchhh------hhhhchhHHHHhhhhc-----CCCHHHHHHHHHHHHHH
Q 000051 1461 PSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1461 p~Ll~~L~---~~~w~~r~~a~~~L~~ia~~~p~~l------~~~L~~ivp~L~~~L~-----D~~~~VR~aA~~aL~~l 1526 (2612)
+.+-+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++|+.||..+++++++.
T Consensus 443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 43434452 4579999999999999999876522 2567888888888866 89999999999999999
Q ss_pred HhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH--hhcCCCHHHHHHHHHHHHHHh
Q 000051 1527 GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVGNMC 1604 (2612)
Q Consensus 1527 ~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~--~l~d~s~~vr~~a~~~l~~l~ 1604 (2612)
++.+... | ..++.+++.+.. ++.+++.++|..|+.++.+++
T Consensus 523 s~~~~~~---------------~----------------------~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~ 565 (980)
T 3ibv_A 523 ASFFDYE---------------S----------------------AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFV 565 (980)
T ss_dssp GGGGGTC---------------C----------------------TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHH
T ss_pred HHHHhcC---------------c----------------------hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHH
Confidence 9877421 0 122233444444 666667788999999999999
Q ss_pred hccCCCCcchhhHhhhHHHHHHHhcC---C------------------CHHHHHHHHHHHHHHHhhhCCC------Cchh
Q 000051 1605 SLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGEE------NFPD 1657 (2612)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d---~------------------~~~VR~~A~~aL~~L~~~~g~~------~~~~ 1657 (2612)
+... ..+.||++.++..+..++.- + ..+-+-...+++|.++...+.. ++..
T Consensus 566 ~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ 643 (980)
T 3ibv_A 566 KSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS 643 (980)
T ss_dssp HHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8753 46789999999888887762 1 1224667999999999887631 4566
Q ss_pred hHHHHHHHhc----cCCCH-HHH---HHHHHHHHHHHHHhCh---------hhHHhHhHHHHHhcc--CCChhhHhHHHH
Q 000051 1658 LVSWLLDALK----SDNSN-VER---SGAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDGYLT 1718 (2612)
Q Consensus 1658 ll~~L~~~L~----~~~~~-~~R---~~aa~~L~~i~~~~g~---------~~l~~llp~l~~~~~--~~~~~vR~~~~~ 1718 (2612)
+++.++..+. ..... ..+ .....+++.+.+++.. ..+.+.++.++..+. ..+..+|+.+..
T Consensus 644 ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~ 723 (980)
T 3ibv_A 644 LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRF 723 (980)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6666554433 22111 111 1344556777777632 234566666666665 457899999999
Q ss_pred HHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000051 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~l 1798 (2612)
+|..+..++|.++.|+++.++..++..+.-. +. ...+..+..++..|+.+..+. +.. +
T Consensus 724 ~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~--e~-~~fL~l~~qli~~f~~~~~~~-l~~------------------l 781 (980)
T 3ibv_A 724 TSGRIINVVGPDMLPKVPQLISILLNSIDMN--EL-VDVLSFISQLIHIYKDNMMEI-TNR------------------M 781 (980)
T ss_dssp HHHHHTTTTHHHHTTTHHHHHHHHHHHCCTT--TH-HHHHHHHHHHHHHTTTTSHHH-HHH------------------H
T ss_pred HHHHHHHHccHhHHHHHHHHHHHHHhcCCHH--HH-HHHHHHHHHHHHHHHHHHHHH-HHH------------------H
Confidence 9999999999999999999999999654422 11 235677778888887762211 111 1
Q ss_pred HHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC-hh
Q 000051 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PK 1877 (2612)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-~~ 1877 (2612)
+..++.++-.... ....+.| .. ++ ...++++-...+..++.+. +.
T Consensus 782 l~~l~~~if~~l~----~~~~~td-----~~------------r~-------------~~~l~r~~~~fl~~i~~~~~~~ 827 (980)
T 3ibv_A 782 LPTLLMRIFSSLS----AAPQGTD-----DA------------VK-------------QNDLRKSYISFILQLLNKGFGS 827 (980)
T ss_dssp HHHHHHHHHHHTT----C----CC-----HH------------HH-------------HHHHHHHHHHHHHHHHHTTCTG
T ss_pred HHHHHHHHHHHhc----CCCCCcH-----HH------------HH-------------HHHHHHHHHHHHHHHHhCCchh
Confidence 1111111000000 0000000 00 00 1124555556666666532 22
Q ss_pred hH-----HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchh---------hhhhHHHHHhhhcCCCChhH
Q 000051 1878 TL-----KEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER---------VLPSIIPILSRGLKDPSASR 1939 (2612)
Q Consensus 1878 ~l-----~~~l~~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~---------~l~~llp~L~~~L~d~~~~v 1939 (2612)
.+ +.+++.++..++.+..+ ++...+..|...+.+++...|+. +.. ++|.......+++-+.
T Consensus 828 v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~ 903 (980)
T 3ibv_A 828 ILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNT 903 (980)
T ss_dssp GGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC-----
T ss_pred hhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCCh
Confidence 22 35677777777765443 67788999999999999876531 345 7777666655554433
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-13 Score=201.62 Aligned_cols=696 Identities=10% Similarity=0.056 Sum_probs=395.6
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHH
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWL 1662 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~----~g~~~~~~ll~~L 1662 (2612)
++.+.|+.|.+.+..+-.. +...+.+..++. +.++.+|..|+..|...+.. +.++....+-..+
T Consensus 19 ~d~~~r~~A~~~L~~~~~~-----------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS-----------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp STTTC----CHHHHHTTTS-----------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 4456777787777765331 122333344443 46789999999999988764 2333333444445
Q ss_pred HHHhccC--CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCC------ChhhHhHHHHHHHHhhhhhc-cc---
Q 000051 1663 LDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ------RASVRDGYLTLFKYLPRSLG-VQ--- 1730 (2612)
Q Consensus 1663 ~~~L~~~--~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~------~~~vR~~~~~~l~~L~~~~g-~~--- 1730 (2612)
++.+... .+..+|...+.+++.++....+ .++++++.+.+.+++. ++..++.++..|..++.... ..
T Consensus 88 l~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 88 LESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 5544432 2467899999999999988776 7888999988887654 56678888888888875321 10
Q ss_pred --------hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhh-ccCCCchHHHHHHHHHHHH
Q 000051 1731 --------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGD 1801 (2612)
Q Consensus 1731 --------f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~-~l~d~~w~vR~~a~~ll~~ 1801 (2612)
+..+++.+++.+...+.+ ... ...+.+|.++..+++.++.
T Consensus 167 ~r~~~~~~l~~~~~~vl~ll~~~l~~-------------------------------~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 167 KRVVLRAEIAKRVQLVIHTVERYLKL-------------------------------QMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHH-------------------------------HTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------------ccCCCCCccchhHHHHHHHHHHH
Confidence 111111111111111100 000 0011135677777777776
Q ss_pred HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHH---------------HccCCCHHHHHHHHH
Q 000051 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM---------------VRSDVSLSVRQAALH 1866 (2612)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~---------------~~~D~~~~VR~aA~~ 1866 (2612)
++.. .+.. .+ ....+++.++. +..+.+..+|..|++
T Consensus 216 ~~~~-~~ip-----------~~-----------------~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 266 (971)
T 2x1g_F 216 WIKN-IGYT-----------IE-----------------GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLK 266 (971)
T ss_dssp HHHH-SCCC-----------GG-----------------GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHH
T ss_pred HHhh-CCcC-----------cc-----------------ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHH
Confidence 6542 0000 00 00112222222 011235678999999
Q ss_pred HHHHHHhcCh-----hhHHHHHHHHHHHHHH---HhcCCCH---HHHHHHHHHHHHHHHHh----c----------hhhh
Q 000051 1867 VWKTIVANTP-----KTLKEIMPVLMNTLIS---SLASSSS---ERRQVAGRALGELVRKL----G----------ERVL 1921 (2612)
Q Consensus 1867 ~l~~l~~~~~-----~~l~~~l~~ll~~L~~---~L~~~~~---~~R~~A~~aL~~lv~~~----~----------~~~l 1921 (2612)
++..++...+ ..+..++|.++...-. .+.+.+. +.....++.+..+.... . ...+
T Consensus 267 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (971)
T 2x1g_F 267 TMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV 346 (971)
T ss_dssp HHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH
Confidence 9999987432 2233344444332211 2233342 44444555555554321 1 1223
Q ss_pred hhHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHhh-----------ChhhHHHhHhHHHHHHHHHhc---CC-----
Q 000051 1922 PSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASA-----------GKSQLLSFMDELIPTIRTALC---DS----- 1977 (2612)
Q Consensus 1922 ~~llp~L~~~L~-----d~~~~vR~~a~~aL~~li~~~-----------~~~~l~~~l~~ll~~l~~~L~---D~----- 1977 (2612)
..+++.+..... ..+.++...++.....+.... ....+.+++..+++.+...+. |.
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 445555555442 246778888887766654411 113346777888888777663 11
Q ss_pred cH-------HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcc
Q 000051 1978 IL-------EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2612)
Q Consensus 1978 d~-------~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~ 2050 (2612)
++ ..|..+..++..++...|...+..+++.+-..+.+.. .. | .+....
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------~~---~------~~w~~~ 481 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ----------------RH---P------THWTKL 481 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH----------------HC---T------TCCHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CC---C------CcHHHH
Confidence 11 3455566666666555553333333333332221100 00 0 000011
Q ss_pred hhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcC--CCCHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHhhcCCCCh
Q 000051 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQA 2126 (2612)
Q Consensus 2051 ~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~--~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~~~~~ 2126 (2612)
..+..+++++++.......++++.+++ ++..+. +.++.+|..++++++.+..... .+++.++++.++..+ + +
T Consensus 482 eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~ 557 (971)
T 2x1g_F 482 EACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--S 557 (971)
T ss_dssp HHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--S
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--h
Confidence 124456666666544444578888888 444454 4589999999999999887654 367999999999998 4 8
Q ss_pred hHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc----cccHHHHHHHHH
Q 000051 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV----QPSYIKVIRDAI 2200 (2612)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~----l~~lv~~l~~~l 2200 (2612)
.++..|+.++..|++..+..+.+|++.++..+..+++. .+...+..+.++++.++...+.+. +..++.++.+.+
T Consensus 558 ~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l 637 (971)
T 2x1g_F 558 SMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEEL 637 (971)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999889999999999999999986 467899999999999998765322 222333333322
Q ss_pred HhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC--CHHHHHH---HHHHHHHHHHhcC------------hh
Q 000051 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQ---AALGLGELIEVTS------------EQ 2263 (2612)
Q Consensus 2201 ~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~--~~~~r~~---aa~~L~~li~~~~------------~~ 2263 (2612)
... +.+. +++.+.. +..+|+.++...+ .+
T Consensus 638 ~~~----------------------------------~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~ 683 (971)
T 2x1g_F 638 QAI----------------------------------CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQ 683 (971)
T ss_dssp HHH----------------------------------HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHH----------------------------------HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCC
Confidence 211 1111 1222222 3333444444332 23
Q ss_pred hhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 2264 SLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2264 ~l~p~v~~i~~pLi~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2612)
.+.++...+.+.+..++... .+.++...++.+++.++...|..+.||+|++.+.++..++.... ..+...++.++.
T Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~ 760 (971)
T 2x1g_F 684 PVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIV 760 (971)
T ss_dssp CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHH
Confidence 56777888888777777543 25689999999999999999999999999999999998877432 235566666643
Q ss_pred c-cC------ChhHHHHHHHH----hhhc-------CCHHHHHHHHHHHHHHHHhcCCCcC-hHH-HHHHHHHHHHhhcC
Q 000051 2343 L-ST------RVDPLVGDLLS----SLQV-------SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLVYH 2402 (2612)
Q Consensus 2343 ~-~~------~~~~~l~~Ll~----~l~~-------~d~~vr~~~l~AL~~vi~~~g~~~~-~~~-~~~i~~~L~~~l~~ 2402 (2612)
. +. .+.+++..+.. .+.. .+++++...+.-+..++.+....+. .+. .+.++......+..
T Consensus 761 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~ 840 (971)
T 2x1g_F 761 MFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTL 840 (971)
T ss_dssp TCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTS
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC
Confidence 2 21 13344443332 2222 2578899998888888887765432 244 67777777777766
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 000051 2403 DDDHVRVSAASILGIMSQC 2421 (2612)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~ 2421 (2612)
++......+...+..+...
T Consensus 841 ~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 841 PESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6655556676777666544
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=198.52 Aligned_cols=472 Identities=13% Similarity=0.126 Sum_probs=315.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhH
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2612)
+..+.+.++++ +...|..+..++..+++..+ ....-+++.+.+.+.|+++.+|..|..++..+ ..+.....+
T Consensus 51 ~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l 122 (591)
T 2vgl_B 51 FPDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYL 122 (591)
T ss_dssp HHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHH
Confidence 34455577776 78889888888888776533 23345667778889999999998886666554 345556778
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh----hH
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EI 1535 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i 1535 (2612)
+|.+.+.+.+.++.+|+.|+.+++.+....|+.+.. +.++|.+.++++|+++.|+.+|+.+|+.++..-++. ..
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 888999999999999999999999999877775532 468899999999999999999999999998754322 11
Q ss_pred hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc-CCCCcc
Q 000051 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDM 1613 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~-~~~~~l 1613 (2612)
...++.|++.+.+.++..+ ..++.+.. +. ..+......+++.+...+++.++.++..|+.++..+...+ .+++.+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 3456666666665555544 34554432 21 1233455678888888899999999999999999887543 123344
Q ss_pred hhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh
Q 000051 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~ 1693 (2612)
....+.+.+.+..++ ++++++|..|..+++.++...+ +.+...+..++ .+.++. ..+|..+...+..++ ..+.
T Consensus 278 ~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~---~~~n 350 (591)
T 2vgl_B 278 NMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLA---SQAN 350 (591)
T ss_dssp HHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTC---CSST
T ss_pred HHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHC---Chhh
Confidence 445567777777655 5789999999999999988643 32222222121 222333 667777776555543 2334
Q ss_pred HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchh
Q 000051 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773 (2612)
Q Consensus 1694 l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i 1773 (2612)
.+.+++.+...+.+.++.+|..++..++.++..++ +....+++.++..+.+..+.++..+..++..++..++.. .
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~ 425 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-Y 425 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-C
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-H
Confidence 56788888888888889999999999888887654 344556777778888888888877777766666544321 0
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc
Q 000051 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2612)
Q Consensus 1774 ~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~ 1853 (2612)
...++.+.+.+.
T Consensus 426 ~~~v~~L~~~l~-------------------------------------------------------------------- 437 (591)
T 2vgl_B 426 ESIIATLCENLD-------------------------------------------------------------------- 437 (591)
T ss_dssp CTTHHHHHHTTT--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 111111111111
Q ss_pred cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC
Q 000051 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2612)
.+....+|..++-++|.+....+. .+.+++.+.+.+.+.+..+|..+..++..+....++...+.+...+..+..
T Consensus 438 ~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~ 512 (591)
T 2vgl_B 438 SLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQ 512 (591)
T ss_dssp TCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 123445566666666665544332 234445555556666788888888888888766544333334444444444
Q ss_pred C-CChhHHHHHHHHHHH
Q 000051 1934 D-PSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1934 d-~~~~vR~~a~~aL~~ 1949 (2612)
| .++++|+.++..+.-
T Consensus 513 d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 513 DSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp TCCCHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHH
Confidence 4 688999988876543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-12 Score=186.30 Aligned_cols=784 Identities=11% Similarity=0.081 Sum_probs=430.3
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------
Q 000051 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2612)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2612)
+.++.+.++-+.++++++.+.+|++..|.+|++.|++.... |....+...+. ..+.+..+|-+|.
T Consensus 6 ~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~ 78 (1023)
T 4hat_C 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLIT 78 (1023)
T ss_dssp GGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 34555566778899999999999999999999999876421 21222222222 2234556666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHhhcC----C-----CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000051 1119 DIWDRYGYDFGTDY-SGLFKALSH----S-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2612)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~----~-----~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2612)
..|...+.+-...+ ..+++.+.+ + ...+|++.+++++.++. .||+.|+..+..+.+... .
T Consensus 79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----~----- 149 (1023)
T 4hat_C 79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S----- 149 (1023)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----T-----
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----C-----
Confidence 46765432222224 455554432 2 46889999999999864 689999999888887631 1
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCC
Q 000051 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2612)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~ 1267 (2612)
+-..+......|..+++.+.+ + .-.+-...-|....+++.. ..+.+++.+..++....
T Consensus 150 --~~~~~~~~L~iL~~L~EEV~~--------~----~~~~l~~~r~~~lk~~l~~--------~~~~I~~ll~~iL~~~~ 207 (1023)
T 4hat_C 150 --SVNVCENNMIVLKLLSEEVFD--------F----SAEQMTQAKALHLKNSMSK--------EFEQIFKLCFQVLEQGA 207 (1023)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHT--------S----CTTTSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCS
T ss_pred --CHHHHHHHHHHHHHHHHHHHH--------h----hhccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCC
Confidence 112344455555555443211 0 0001111122222222221 24556666666665421
Q ss_pred CChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHH-HhcCCCCHHHHHHHHhhhHHhHhhh--cc--hhH----HH
Q 000051 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD--EAP----TL 1338 (2612)
Q Consensus 1268 ~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~-~~L~~~~~~Vq~~~~~~L~~lv~~~--~~--~~~----~l 1338 (2612)
...+...+...++....+++-..-.-..+++.++ ..+. +++.|.++++|+..++... ++ ... .+
T Consensus 208 -----~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 208 -----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp -----SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 1233344555555554444321000123666666 6664 5689999999999988632 22 122 22
Q ss_pred HHHHHHHh---------------hcCC--ChHHHHHHHHHHHHHHhhhCcchh--hh-hcHHH----HHHHHHhCCCCHH
Q 000051 1339 VSRLLDQL---------------MKSD--KYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAK 1394 (2612)
Q Consensus 1339 i~~ll~~L---------------~~~~--~~~~R~~Aa~~L~~l~~~lg~~~l--~~-~~i~~----~L~~~i~~~~~~~ 1394 (2612)
++..++.+ ..++ |.....+-+..+..+......-.. .. .+++. .|..+...+ +..
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~e 359 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERE 359 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHH
Confidence 33333322 1111 122222333333333332211000 00 12322 444443444 555
Q ss_pred HHHHHHHHHHHHHHHhc------ccchhhHHHHHHHHHHHcCCCC-------------------HH--HH-HHHHHHHHH
Q 000051 1395 RREGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV-------------------VA--VR-EAAECAARA 1446 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~------~~~~~~v~~ilp~ll~~l~D~~-------------------~~--VR-~aa~~al~~ 1446 (2612)
.-..++.....+++.+- ..+.|++.++++.++..+.-+. .+ .. +...+++..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 54445554455555332 3478889999999998875332 00 00 111255555
Q ss_pred HHHhhcHHhHHhHHHHHHhhhcC--CChhhHHHHHHHHHHHHhhCch-hhhhhhchhHHHHhhhhc-----CCCHHHHHH
Q 000051 1447 MMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSA 1518 (2612)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~ia~~~p~-~l~~~L~~ivp~L~~~L~-----D~~~~VR~a 1518 (2612)
+..-.+++.++.+++.+.+.+.+ .+|+.+.+++.++|+++.+... ....+++.++|.|+.++. |.++.||..
T Consensus 440 l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t 519 (1023)
T 4hat_C 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASD 519 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHH
Confidence 54444555556677777666654 6899999999999999987554 467889999999999886 467788889
Q ss_pred HHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
+++++|+..+.+... ...+..++..+.+++.+.++++...||.
T Consensus 520 ~~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~ 562 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACD 562 (1023)
T ss_dssp HHHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999888765310 1123334555566666666788888888
Q ss_pred HHHHHhhccCC------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhccCCC
Q 000051 1599 IVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1599 ~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-~~~ll~~L~~~L~~~~~ 1671 (2612)
++..+|..+.. +.+..||++.++..+.....+-.+.-+..+..++|.++...+.+. ...++..|+..+.
T Consensus 563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~---- 638 (1023)
T 4hat_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN---- 638 (1023)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHH----
T ss_pred HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHH----
Confidence 88888875432 234468999999999998888788899999999999999887542 2333333332211
Q ss_pred HHHHHHHHHHHHHHHH--HhChhhHH--hHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1672 NVERSGAAQGLSEVLA--ALGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~--~~g~~~l~--~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
+.+..+.. .-+...+. +-...+ -..+.++..++..+|..|.||+..+.+.+++..+
T Consensus 639 --------~~~~~l~~~~~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 639 --------MAWDTIVEQSTANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp --------HHHHHHHHHHHHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 01111111 01111110 001111 1235577788899999999999999998876532
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchH
Q 000051 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2612)
Q Consensus 1748 d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~ 1827 (2612)
-.... +...+..-|....+. | ..+++ -.+|.+.++++...+.... + .+
T Consensus 699 ~~s~~--------i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~-------------~----~~ 746 (1023)
T 4hat_C 699 AVSSM--------ISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKAR-------------N----LD 746 (1023)
T ss_dssp HHHHH--------HHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCS-------------C----HH
T ss_pred HHHHH--------HHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCC-------------C----HH
Confidence 11111 111111112111000 0 00000 0155666666666654321 0 01
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc---CCCH
Q 000051 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSD-----VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSS 1899 (2612)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vl~~L~~~~~D-----~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~---~~~~ 1899 (2612)
. +... ..+.++..+...-.. ....|-.....++..+.......+..++..++..-+.+++ +.++
T Consensus 747 ~----~~~~----~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 747 D----VVKV----LVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp H----HHHH----THHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred H----HHHH----hHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 1 1111 111222222211111 1234444444444444333333344444555544555665 3689
Q ss_pred HHHHHHHHHHHHHHHHhchh-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh--------hhHHHhHh
Q 000051 1900 ERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK--------SQLLSFMD 1964 (2612)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~--------~~l~~~l~ 1964 (2612)
+.|..-.+.+..+...+... ....++..+.-+++.+.+++-..++..+.+++.+... .-+..|+.
T Consensus 819 e~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~ 898 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFF 898 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999988876443 3345666666678888888888888877777765432 11234445
Q ss_pred HHHHHHHHHhcCC
Q 000051 1965 ELIPTIRTALCDS 1977 (2612)
Q Consensus 1965 ~ll~~l~~~L~D~ 1977 (2612)
.++..+...+.|.
T Consensus 899 ~~~~~~~~v~td~ 911 (1023)
T 4hat_C 899 IFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCc
Confidence 5555555555554
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-14 Score=192.06 Aligned_cols=464 Identities=13% Similarity=0.140 Sum_probs=321.0
Q ss_pred HHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhh
Q 000051 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930 (2612)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~ 1930 (2612)
....+.+..+|+.+.-.+..++...++. ...+++.+.+.+.++++.+|..|.++++.+. .+.+.+.+.|.+.+
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~ 128 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQPDM----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRK 128 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHSHHH----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence 3467888999999999988887755432 3334566777789999999999999888764 55577888999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----hhhhhHH
Q 000051 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----AIDEIVP 2006 (2612)
Q Consensus 1931 ~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~----~~~~ilp 2006 (2612)
++.|+++.+|..|+.+++.+... +++.+.. ..+++.+...+.|+++.|+.+|..+++.+....+.. .....++
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDI-NAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHS-SCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhh-Chhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence 99999999999999999998763 3433321 468899999999999999999999999886543211 1123355
Q ss_pred HHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCC
Q 000051 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD 2086 (2612)
Q Consensus 2007 ~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~ 2086 (2612)
.++..+.+.+.+. ....+..++.. ++.-.+....+++.+...+.+.
T Consensus 206 ~Ll~~l~~~~~~~---------------------------------q~~il~~l~~l-~~~~~~~~~~~l~~l~~~l~~~ 251 (591)
T 2vgl_B 206 KLLTALNECTEWG---------------------------------QIFILDCLSNY-NPKDDREAQSICERVTPRLSHA 251 (591)
T ss_dssp HHHHHHHHCCHHH---------------------------------HHHHHHHHHTS-CCCSHHHHHHHHHHHTTCSCSS
T ss_pred HHHHcCCCCCchH---------------------------------HHHHHHHHHHh-CCCChHHHHHHHHHHHHHHcCC
Confidence 5555543322110 11222222221 1111234567788888888888
Q ss_pred CHHHHHHHHHHHHHhhhhc--ccccHH----HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Q 000051 2087 DMDVQSLAKEAAETVTLVI--DEEGVE----SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV 2160 (2612)
Q Consensus 2087 ~~~vr~~a~~al~~l~~~~--~~~~l~----~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ 2160 (2612)
++.|+..+++++..+...+ +++.+. .+.+.|...+ ++++.+|..++.+++.+....+..+.++...+ +
T Consensus 252 ~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~- 325 (591)
T 2vgl_B 252 NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F- 325 (591)
T ss_dssp TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-
T ss_pred ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-
Confidence 9999999999988876543 234444 3444455443 57899999999999999887665555544322 2
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhc
Q 000051 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS 2240 (2612)
Q Consensus 2161 ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~ 2240 (2612)
+..+++..||..+.+.+..++.. ..+..+++.+.+.+.+
T Consensus 326 ~~~~d~~~Ir~~al~~L~~l~~~-----------------------------------------~nv~~iv~~L~~~l~~ 364 (591)
T 2vgl_B 326 VKYNDPIYVKLEKLDIMIRLASQ-----------------------------------------ANIAQVLAELKEYATE 364 (591)
T ss_dssp CCTTSCHHHHHHHHHHHHHTCCS-----------------------------------------STHHHHHHHHHHHTTS
T ss_pred eccCChHHHHHHHHHHHHHHCCh-----------------------------------------hhHHHHHHHHHHHHhc
Confidence 22233488888888777665421 2233455555666667
Q ss_pred CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHH
Q 000051 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320 (2612)
Q Consensus 2241 ~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k 2320 (2612)
.+.+.|..++.+|+.++.+.+ +....++..|+..+.+. .+.++..++.++..++++.+.... .....+.+
T Consensus 365 ~d~~~r~~~v~aI~~la~~~~-----~~~~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~~~~----~~v~~L~~ 434 (591)
T 2vgl_B 365 VDVDFVRKAVRAIGRCAIKVE-----QSAERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPNKYE----SIIATLCE 434 (591)
T ss_dssp SCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCSSCC----TTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCh-----hHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcchHH----HHHHHHHH
Confidence 788999999999999997653 23344556678888876 667778888899999988775432 23444556
Q ss_pred HhcC-CCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHh
Q 000051 2321 CLQD-STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2612)
Q Consensus 2321 ~L~d-~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2612)
.+.+ .++.+|..+++++|.+...-+....++..+++.+...+..+|..++.|+..+....+... . +.+..++...
T Consensus 435 ~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~---~~i~~ll~~~ 510 (591)
T 2vgl_B 435 NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-Q---ELVQQVLSLA 510 (591)
T ss_dssp TTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-H---HHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-H---HHHHHHHHHh
Confidence 7765 478999999999999865545566777777777766678999999999999987765432 2 3333344444
Q ss_pred hcC-CCHHHHHHHHHHHHHHH
Q 000051 2400 VYH-DDDHVRVSAASILGIMS 2419 (2612)
Q Consensus 2400 l~~-~~~~vr~~aa~~Lg~L~ 2419 (2612)
..+ .+.++|..|.+.++-+.
T Consensus 511 ~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 511 TQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HTTCCCHHHHHHHHHHHTTTT
T ss_pred hhcCCChHHHHHHHHHHHHHC
Confidence 344 67899998888776554
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-11 Score=177.99 Aligned_cols=696 Identities=11% Similarity=0.079 Sum_probs=411.8
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh----CCCCchhhHHHH
Q 000051 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM----GEENFPDLVSWL 1662 (2612)
Q Consensus 1587 d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~----g~~~~~~ll~~L 1662 (2612)
+++...|+.|.+.+..+-.. + +.-.+ +...+. .+.++.+|..|+..|...+..- +++....+-..+
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~---p-~~~~~---l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~l 96 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDN---P-DAWQK---ADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFV 96 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHS---T-TGGGG---HHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhC---c-hHHHH---HHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHH
Confidence 34456899999999887552 1 22222 222222 2568999999999999887642 222223344444
Q ss_pred HHHhccCC--------CHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhc------
Q 000051 1663 LDALKSDN--------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG------ 1728 (2612)
Q Consensus 1663 ~~~L~~~~--------~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g------ 1728 (2612)
+..+.+.. ...+|...+++++.++....++.++++++.+++.++ .++..++.++.++..++....
T Consensus 97 l~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~ 175 (1049)
T 3m1i_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQ 175 (1049)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchh
Confidence 44443321 245788889999999988777888999999999886 566678888999988886543
Q ss_pred ----------cchhhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhch--hhhhHHHHhhccCCCchHHHHHH
Q 000051 1729 ----------VQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS--LPLLLPAVEDGIFNDNWRIRQSS 1795 (2612)
Q Consensus 1729 ----------~~f~p~l~~iip~ll~~L~d-~~~~VR~~Al~al~~lv~~~~~~~--i~~llp~L~~~l~d~~w~vR~~a 1795 (2612)
..|..+++.+++.+...+.+ .+..++..+++++..++...+... .+.+++.+.+.+. .+..+|..+
T Consensus 176 ~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a 254 (1049)
T 3m1i_C 176 MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAIT 254 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHH
Confidence 23556677777777777654 346788888888876654322111 0123333321111 134566667
Q ss_pred HHHHHHHHHHhcCCc-----cc---------------c---------cccCCCCCCccchHHHHHHHH-------HHhC-
Q 000051 1796 VELLGDLLFKVAGTS-----GK---------------A---------LLEGGSDDEGASTEAHGRAII-------EVLG- 1838 (2612)
Q Consensus 1796 ~~ll~~ll~~~~~~~-----~~---------------~---------~~~~~~ddd~~~~~~~~~~l~-------~~Lg- 1838 (2612)
++.+..++..-.+.. .+ . .....+++|.+-.....+.+. +.+.
T Consensus 255 ~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~ 334 (1049)
T 3m1i_C 255 LKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLES 334 (1049)
T ss_dssp HHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 776666553200000 00 0 000011111110111111111 1110
Q ss_pred ----hhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh------cChhhHHHHHHHHHHHHHHHhcCC-----------
Q 000051 1839 ----RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA------NTPKTLKEIMPVLMNTLISSLASS----------- 1897 (2612)
Q Consensus 1839 ----~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~------~~~~~l~~~l~~ll~~L~~~L~~~----------- 1897 (2612)
.+....++..+..+....+..++..+++.|..++. .....+.++++.+++.++..+.-+
T Consensus 335 ~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~ 414 (1049)
T 3m1i_C 335 DESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG 414 (1049)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTS
T ss_pred ChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCC
Confidence 11233455555555455588999999999999987 223456788999999988877421
Q ss_pred --------C---HHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhChhhHHHhHh
Q 000051 1898 --------S---SERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2612)
Q Consensus 1898 --------~---~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2612)
+ +..|..+..+|..++...+..+++.+.+.+.+.+. ..+|..|.+++.++|.+...+.+..-..+++
T Consensus 415 e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~ 494 (1049)
T 3m1i_C 415 EIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV 494 (1049)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred cchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH
Confidence 1 13466778888888877777788888888887775 3689999999999998766555443345678
Q ss_pred HHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccc
Q 000051 1965 ELIPTIRTALC-----DSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037 (2612)
Q Consensus 1965 ~ll~~l~~~L~-----D~d~~Vr~~A~~al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vl 2037 (2612)
.+++.+..... |+.+.++..++.+++++.+.+. +..+..+++.+++.|.++.
T Consensus 495 ~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~--------------------- 553 (1049)
T 3m1i_C 495 TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH--------------------- 553 (1049)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSC---------------------
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---------------------
Confidence 88887776432 3566777778888887765433 2344555555555554322
Q ss_pred cccchhhccCCcchhHHHHHHHHHHHhCCChh--------hhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-c
Q 000051 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLN--------FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-E 2108 (2612)
Q Consensus 2038 p~Lip~L~~~~~~~~~~~al~~La~~~g~~l~--------~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~ 2108 (2612)
+++...++.++..+++.++..+. ||++.++..+...+..-+.+......++++.++...+. +
T Consensus 554 ---------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~ 624 (1049)
T 3m1i_C 554 ---------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1049)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHH
Confidence 12233466777777776665554 99999999998888776666677788899998876652 2
Q ss_pred ----cHHHHHHHHHhhcC--------C----CChh-HHH--HHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhH
Q 000051 2109 ----GVESLVSELLKGVG--------D----NQAS-IRR--SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169 (2612)
Q Consensus 2109 ----~l~~ll~~Ll~~l~--------~----~~~~-vR~--~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V 2169 (2612)
.+..+++.+...+. + .++. .+. ..+.++..++...+..+.++...++..++..+...
T Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~---- 700 (1049)
T 3m1i_C 625 ERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAV---- 700 (1049)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 23444443332211 1 0222 122 33556677777778888888877776665444211
Q ss_pred HHHHHHHHHHHHhhcCc--------cccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC
Q 000051 2170 VAAAWEALSRVVASVPK--------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 2241 (2612)
Q Consensus 2170 ~~~a~~aL~~l~~~~~~--------~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~ 2241 (2612)
...+.......+. ..+..+.+.+.+.+....... . .+ +......+.+++..++....+.
T Consensus 701 ----~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~-----~---~l-~~~~~~~~~~~l~~ll~~~~~~ 767 (1049)
T 3m1i_C 701 ----SSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA-----R---NL-DDVVKVLVEPLLNAVLEDYMNN 767 (1049)
T ss_dssp ----HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC-----S---CH-HHHHHHTHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC-----C---CH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 1111111110010 112223333333333221110 0 00 0000011222333333333222
Q ss_pred CHHHH-HHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH----hcC--CCCHhHHHHHHHHHHHHHHhcCCCccCc----
Q 000051 2242 SAELR-EQAALGLGELIEVTSEQSLKEFVIPITGPLIRI----IGD--RFPWQVKSAILSTLSIIIRKGGIALKPF---- 2310 (2612)
Q Consensus 2242 ~~~~r-~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~----l~~--~~~~~vk~~al~~L~~L~~~~~~~l~p~---- 2310 (2612)
.+..| ..+..+++.++...| +.+.||+..+...+... +.+ ...++++...+..++.++.+++..+.+.
T Consensus 768 ~~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~ 846 (1049)
T 3m1i_C 768 VPDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAA 846 (1049)
T ss_dssp CGGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHH
T ss_pred CcccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHH
Confidence 22211 347888999999888 67888888877665554 332 2468899999999999999887765431
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2311 lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2612)
+..+....+.++..+++.+...+...+-.++.
T Consensus 847 ~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~ 878 (1049)
T 3m1i_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVK 878 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 34456667778988899999999988888754
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=194.80 Aligned_cols=540 Identities=12% Similarity=0.068 Sum_probs=328.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHH
Q 000051 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2612)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2612)
++.++..|.+++...|..+.+.+...-+ ..+....+|.|...+.++++.+|..++.+|+.+.............+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5567777888888888888877764321 1233566777777788889999999999999886532211111112467
Q ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCh-h--hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccch
Q 000051 1967 IPTIRTALCD-SILEVRESAGLAFSTLFKSAGM-Q--AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042 (2612)
Q Consensus 1967 l~~l~~~L~D-~d~~Vr~~A~~al~~l~~~~g~-~--~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip 2042 (2612)
++.+...+.+ .++++|..|+.++..+...... . .-...+|.|++.|++++..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~------------------------ 249 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDS------------------------ 249 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHH------------------------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHH------------------------
Confidence 8888888864 4899999999999887532111 0 1123566666666554311
Q ss_pred hhccCCcchhHHHHHHHHHHHhCCChhhhH-hhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccc----cHHHHHHHH
Q 000051 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE----GVESLVSEL 2117 (2612)
Q Consensus 2043 ~L~~~~~~~~~~~al~~La~~~g~~l~~~l-~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~----~l~~ll~~L 2117 (2612)
+...++.+|..|+......-.... ..+++.|++.+.+++..++..+..++..+.....+. .-...++.|
T Consensus 250 ------v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~L 323 (780)
T 2z6g_A 250 ------VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 323 (780)
T ss_dssp ------HHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred ------HHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 111234455555543222111121 468899999998888899998888887665421110 001235566
Q ss_pred HhhcCCCCh-hHHHHHHHHHHHHHHhcccchhcc-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHH
Q 000051 2118 LKGVGDNQA-SIRRSSAYLIGYFYKNSKLYLVDE-APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2612)
Q Consensus 2118 l~~l~~~~~-~vR~~A~~~L~~l~~~~~~~~~~~-~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2612)
+..+++.+. ..+..++.++..++.... ..... -...++.|+.++.+.+..++..+..+|..++....+.
T Consensus 324 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-------- 394 (780)
T 2z6g_A 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-------- 394 (780)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTSTT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--------
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcChH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--------
Confidence 666666554 445577888888875321 11111 1245788888999989999999988888887543210
Q ss_pred HHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch-hhhhH
Q 000051 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITG 2274 (2612)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v-~~i~~ 2274 (2612)
.+...++|.+++.+.+.++++|..|+.+|+.++.... ......+ ...++
T Consensus 395 -----------------------------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 395 -----------------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIE 444 (780)
T ss_dssp -----------------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHH
T ss_pred -----------------------------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHH
Confidence 1234578888888888999999999999999976432 2222111 34567
Q ss_pred HHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCCC--ccCc--hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCCh-
Q 000051 2275 PLIRIIGDRF-PWQVKSAILSTLSIIIRKGGIA--LKPF--LPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRV- 2347 (2612)
Q Consensus 2275 pLi~~l~~~~-~~~vk~~al~~L~~L~~~~~~~--l~p~--lpqL~~~~~k~L~d~~-~~vR~~Aa~aLg~L~~~~~~~- 2347 (2612)
+|++.+.+.. ..+++..++.+|+.|....+.. .+.. ....++.+++.|.+++ +.+|..|+.+|+++.......
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 524 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888887532 3489999999999885422210 0000 0123567788888875 599999999999996421111
Q ss_pred ----hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhC
Q 000051 2348 ----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCM 2422 (2612)
Q Consensus 2348 ----~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~ 2422 (2612)
...++.|+..+.+.+..+|..+.+++.. . .... ...+.++..++.+|+.|+..
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n--q-------------------~~~~~~~~~~v~~~a~~aL~~La~~- 582 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ--Q-------------------QFVEGVRMEEIVEACTGALHILARD- 582 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTTC---------------------------CCSTTCCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHCCCHHHHHHHHHhcchhHHHHHhhcccc--c-------------------hhhcccChHHHHHHHHHHHHHHhcC-
Confidence 1245666666655444444433333221 0 0111 12356788888888888631
Q ss_pred ChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000051 2423 EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2612)
Q Consensus 2423 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2612)
. .. +. .+.. .+ +++.++..+.+.++.++.+|+.+++.+...
T Consensus 583 -~-~~------------------~~--------~l~~-------~~----~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 583 -I-HN------------------RI--------VIRG-------LN----TIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp -H-HH------------------HH--------HHHH-------TC----CHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred -h-hh------------------HH--------HHHH-------CC----cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 1 00 00 0000 01 244556667778889999999999988643
Q ss_pred hhccCCCCchhhHH--HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH-HHHHHHh
Q 000051 2503 QIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL-FGPALAE 2564 (2612)
Q Consensus 2503 ~~~~~~~~~~~l~~--~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~-l~p~l~~ 2564 (2612)
.. ....+.+ .++.++..+.+++.+||+.|+.+|..+++.+|..++..+.. +++.+|.
T Consensus 624 ~~-----~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~ 683 (780)
T 2z6g_A 624 KE-----AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683 (780)
T ss_dssp HH-----HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC--
T ss_pred HH-----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHh
Confidence 21 1122222 57778888899999999999999999999999877665532 4555553
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=184.27 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=267.8
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHH
Q 000051 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2612)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~ 1580 (2612)
+|.+++.++++++.+|..|+.+|..+...-.++.+..++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 777888898999999999999999876532222211100 0 0025666
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--C--
Q 000051 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--N-- 1654 (2612)
Q Consensus 1581 L~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~--~-- 1654 (2612)
+.+.+.+. ++.+|..++.++++++.. .++....+ -..++|.+.+++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 67777766 788999999999998862 21111111 2468999999999999999999999999998743211 1
Q ss_pred chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC----hhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g----~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
-...+|.++..+.++.+..+|..++.+++.++...+ .......+|.+++.+.+.++.+|..++.++..++....+.
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 135788888888865667789999999999885432 2234678899999999999999999999999987643221
Q ss_pred hhhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000051 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2612)
Q Consensus 1731 f~p~l-~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~ 1809 (2612)
..... ..++|.++..+.++++.+|..++.++..+....+
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------------------------------------- 266 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD---------------------------------------- 266 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh----------------------------------------
Confidence 11111 1245555555555555555555444443321100
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH-HHHHH
Q 000051 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2612)
Q Consensus 1810 ~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~ll~ 1888 (2612)
...+.+. . ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 267 ------------------~~~~~~~---~----~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 267 ------------------IQTQVIL---N----CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp ------------------HHHHHHH---T----TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred ------------------HHHHHHH---H----CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000010 0 02445555566777889999999999999876665555444 36778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-----
Q 000051 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2612)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~----- 1958 (2612)
.++..+.+.++.+|..|+.+|+.++....+. ....++|.|...+.++++++|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 8888888899999999999999998763322 124588889999999999999999999999876433211
Q ss_pred -HHHhHhHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1959 -l~~~l~~l-----l~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
..+|...+ ++.+...+.+++.++++.|..++..+.
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12344444 566777777788899998888777664
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-11 Score=169.47 Aligned_cols=759 Identities=9% Similarity=0.069 Sum_probs=405.4
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------
Q 000051 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2612)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2612)
+.++.+.++-+.+++++..+.+|++..|.+|++.|.+.... |........+ -..+.+..++-+|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~i--L~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTI--LEFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHH
Confidence 34455556667899999999999999999999999886421 2222222222 12344566666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHhhc---------CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000051 1119 DIWDRYGYDFGTDY-SGLFKALS---------HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2612)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~---------~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2612)
..|...+.+-...+ ..++..+. ..+..++.+.+++++.++. .||+.|+..+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 45764332222224 45555442 2367899999999999875 5899998888888876431
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCC
Q 000051 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2612)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~ 1267 (2612)
+-..+......|..+++.+.+-.. .-+. ..-|....+++. ..++.+++++..++...
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~~---------~~l~---~~r~~~lk~~L~--------~~~~~Il~ll~~iL~~~- 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFSS---------GQIT---QVKAKHLKDSMC--------NEFSQIFQLCQFVMENS- 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSHH---------HHBC---HHHHHHHHHHHH--------HTCHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHhccc---------cccc---HHHHHHHHHHHH--------HHHHHHHHHHHHHhccc-
Confidence 113455566666666554321100 0010 111112222221 12566777777777642
Q ss_pred CChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHH-HHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHH-
Q 000051 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ- 1345 (2612)
Q Consensus 1268 ~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L-~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~- 1345 (2612)
. ...+...+...++....+++-+.-.-..+++.+ ...|. ++++|.++++||..++....+...+.+..+++.
T Consensus 219 ~----~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 Q----NAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp C----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 123344555666666666542211112356666 46664 568999999999988865322222333333322
Q ss_pred ---h---h-cCCChHH--------HHHHHHHHHHHHhhhCcchh---------hh--hcHHHHHHHHHhCCCCHHHHHHH
Q 000051 1346 ---L---M-KSDKYGE--------RRGAAFGLAGVVKGFGISSL---------KK--YGIAATLREGLADRNSAKRREGA 1399 (2612)
Q Consensus 1346 ---L---~-~~~~~~~--------R~~Aa~~L~~l~~~lg~~~l---------~~--~~i~~~L~~~i~~~~~~~~R~~A 1399 (2612)
+ . ...+... -..-..+++.+....|.... .. ...+..+..+...+ +...-...
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 1 1 1101100 01223334444433322111 00 01233344444444 44444444
Q ss_pred HHHHHHHHHHhc-------------------------ccchhhHHHHHHHHHHHcCCCCH--------------------
Q 000051 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQVV-------------------- 1434 (2612)
Q Consensus 1400 l~al~~L~~~~~-------------------------~~~~~~v~~ilp~ll~~l~D~~~-------------------- 1434 (2612)
+.....+.+.+- ..+.|++.++...++..+.-|+.
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 443333443221 12566677777777776653211
Q ss_pred --HHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcC--CChhhHHHHHHHHHHHHhhCch-hhhhhhchhHHHHhhhhc
Q 000051 1435 --AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT 1509 (2612)
Q Consensus 1435 --~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~ia~~~p~-~l~~~L~~ivp~L~~~L~ 1509 (2612)
.+++..-+++..+..-.+.+....+++.+-+.+.. .+|....+.|.++|+|+.+... .-...++.+++.|+.+..
T Consensus 452 ~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e 531 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE 531 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccc
Confidence 12333344443332222233445566666555543 4699999999999999876553 455789999999998886
Q ss_pred CC-----CHHHHHHHHHHHHHHHhhcCC-h-hHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000051 1510 DT-----HPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1510 D~-----~~~VR~aA~~aL~~l~~~~~~-~-~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~ 1582 (2612)
.+ .+.|+...+..+|+..+.+.+ + .++.++ ..+.
T Consensus 532 ~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl---------------------------------------~~L~ 572 (1073)
T 3gjx_A 532 QKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVV---------------------------------------NKLF 572 (1073)
T ss_dssp HSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHH---------------------------------------HHHH
T ss_pred cccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHH---------------------------------------HHHH
Confidence 54 345677777888888776542 1 223333 3344
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCC------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-c
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 1655 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-~ 1655 (2612)
+.+.+.++.++.+|+.++..+|..+.. +.+..||++.++..+.....+=.++-...-..++|.++...|.+. .
T Consensus 573 ~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~ 652 (1073)
T 3gjx_A 573 EFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQ 652 (1073)
T ss_dssp HHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchH
Confidence 445555567777888888887765432 123568999999988888887778888899999999999887642 2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--hChhhHH--hHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch
Q 000051 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1656 ~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~--~g~~~l~--~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f 1731 (2612)
+.++..++.... +.+..+... -+.+.+. ..+..+ -..+.+...++..+|..|
T Consensus 653 ~~~i~~Lm~~~~------------~~w~~l~~~~~~~~~~~~d~~~i~~l------------~~il~~n~~v~~~~g~~f 708 (1073)
T 3gjx_A 653 EHLIEKYMLLPN------------QVWDSIIQQATKNVDILKDPETVKQL------------GSILKTNVRACKAVGHPF 708 (1073)
T ss_dssp HHHHHHHTHHHH------------HHHHHHHHHHHHCGGGGGCHHHHHHH------------HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHhhcCchhccChHHHHHH------------HHHHhhhHHHHhhcchhH
Confidence 333333322111 111112111 0111110 001111 123456677888999999
Q ss_pred hhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000051 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~ 1811 (2612)
.|++..+.+.++..-+ ..-......+..-|....+. ...+++ -.+|.+.++++...+..
T Consensus 709 ~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~------ 767 (1073)
T 3gjx_A 709 VIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR------ 767 (1073)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc------
Confidence 9999998887764321 11111111111111111000 001111 01455666666665422
Q ss_pred cccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH--cc---CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 000051 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RS---DVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886 (2612)
Q Consensus 1812 ~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~--~~---D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~l 1886 (2612)
.+| .+ .+.+.+- +.++..+... .+ -...+|-.....++..+....+..+..++..+
T Consensus 768 -------~~~----~~----~v~~~~i----~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~v 828 (1073)
T 3gjx_A 768 -------SND----PQ----MVAENFV----PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 828 (1073)
T ss_dssp -------CSC----HH----HHHHHTS----HHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHH
T ss_pred -------CCC----HH----HHHHHhH----HHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 000 11 1111111 1122222111 01 12334444444455555444444455555555
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhchh-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1887 MNTLISSLA---SSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1887 l~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
+..-+..++ +..++.|..-.+.+..+...+... ....++..+.-+++.+.+++-..+...+.+++.+.
T Consensus 829 f~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~ 906 (1073)
T 3gjx_A 829 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 906 (1073)
T ss_dssp HHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHh
Confidence 555566665 568999999999999998886543 23446666666777777777766666666666543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-13 Score=186.11 Aligned_cols=506 Identities=11% Similarity=0.058 Sum_probs=324.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh-hhhhhch
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPK 1499 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ 1499 (2612)
-+|.++..+.+++..+|.++...++..-.. .-....+|.|+..|.+.+..+|..|+.+|+.++...+.. .....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 367778888888889998887777644211 112667888888888889999999999999998643221 1112357
Q ss_pred hHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000051 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1500 ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
+++.|+..|.+ .++.+|..|+.+|..++..- ... ..+ . -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~---~~~---~~i------------------~------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHR---EGL---LAI------------------F------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH---HHH---HHH------------------H------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc---hhH---HHH------------------H------------HcCCH
Confidence 88889988874 48999999999999887531 100 000 0 01256
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 1653 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~---- 1653 (2612)
|.|.+.+.+.+..++..|+.+|.+++..... ....+. ...++.+..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777778888889999999999999875211 112221 468899999999999999999999999887522111
Q ss_pred CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1654 ~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
.-...++.|+..+++......+..++..+..+...-.. ..+ ...++.++..+.+.+..+++.++.++..++...+..
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 11255778888887665554444445555554421111 111 346788888888888999999999999998765431
Q ss_pred hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc---hh-hhhHHHHhhccCC-Cch-HHHHHHHHHHHHHHH
Q 000051 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SL-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1804 (2612)
Q Consensus 1731 f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~---~i-~~llp~L~~~l~d-~~w-~vR~~a~~ll~~ll~ 1804 (2612)
.....++|.++..+.+++..+|..|..++..+....... .+ ...+|.+.+.+.+ .++ .+|..++..++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 223568999999999999999999999988775421110 00 1245555555544 233 789999988887631
Q ss_pred HhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHhcChhhHHHHH
Q 000051 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM 1883 (2612)
Q Consensus 1805 ~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2612)
. +.+ .+.....+... ..++.|...+.+.+ +.+|..|+.+++.++.+... ...+.
T Consensus 473 ~--------------~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~ 527 (780)
T 2z6g_A 473 R--------------HQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLR 527 (780)
T ss_dssp S--------------STT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHH
T ss_pred c--------------Cch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 0 011 00011112111 12444444554444 69999999999999864322 12221
Q ss_pred -HHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCCh
Q 000051 1884 -PVLMNTLISSLASSS----------------------SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1937 (2612)
Q Consensus 1884 -~~ll~~L~~~L~~~~----------------------~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1937 (2612)
..+++.++..+.+.+ ..++..++.+|+.++...... .....+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 123445555444322 456677788888775321111 124568888999999999
Q ss_pred hHHHHHHHHHHHHHHhhChhhHHHhHh--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000051 1938 SRRQGVCIGLSEVMASAGKSQLLSFMD--ELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1938 ~vR~~a~~aL~~li~~~~~~~l~~~l~--~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g 1997 (2612)
+++..++.+|+.+... ......+. ..++.+...+.+++++||..|..++..+.....
T Consensus 608 ~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999987532 22222332 367888899999999999999999999876544
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=181.39 Aligned_cols=345 Identities=13% Similarity=0.073 Sum_probs=254.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccchhhHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHH-
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 1454 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~-~~~~~~~~v~--~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~- 1454 (2612)
++.+.+.+++. ++..|..|+.++..+... ........+. .++|.++..+.++ ++.+|..|..++..+...-+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45566677766 789999999999887652 2222334443 5899999999988 8999999999999887633222
Q ss_pred --hH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhh
Q 000051 1455 --GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1455 --~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.+ ...+|.+++.+.++++.+|..|+.+|+.++...+......+ ..++|.+..++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 11 46899999999999999999999999999987654322222 4688999999985 7899999999999999965
Q ss_pred c-CC---hhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccc--cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000051 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2612)
Q Consensus 1530 ~-~~---~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~--~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~ 1602 (2612)
. .. ..+..++|.|.+.+.+++..++ .++..+....... ....-.-..++|.+...+.+.++++|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 11 2347899999999988887776 4555554311100 00001113468888999999999999999999999
Q ss_pred HhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---Cc-hhhHHHHHHHhccCCCHHHHHH
Q 000051 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2612)
Q Consensus 1603 l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~---~~-~~ll~~L~~~L~~~~~~~~R~~ 1677 (2612)
++.. .+......+ ..+++.+..++.++++.+|..|+.+|+.++....+. .. ..++|.++..+.+.. ..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHH
Confidence 9863 211111122 258899999999999999999999999998632211 11 367888888887654 568999
Q ss_pred HHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhc
Q 000051 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2612)
Q Consensus 1678 aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g 1728 (2612)
++.+++.++.....+.. ..++|.+++.+.+.++.+|+.++.++..+....+
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 99999999876443322 3578999999999999999999999999887543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=176.76 Aligned_cols=388 Identities=14% Similarity=0.108 Sum_probs=279.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~ 1414 (2612)
-++.+++.|.. ++...|..|+..|..++.+.. ...+....+++.|.+++.+..++..|..|+.+++.++.+.+...
T Consensus 75 ~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 35666666643 457888999999988876543 12233346888899999887459999999999999987533222
Q ss_pred hhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhh-cCCChhhHHHHHHHHHHHHhh
Q 000051 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2612)
Q Consensus 1415 ~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~r~~a~~~L~~ia~~ 1488 (2612)
...+. ..+|.++..+.++++.||+.|..++..+...-+.. .+ ...+|.|+..+ .+.++..+..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 58999999999999999999999999997643321 12 34789999999 677899999999999999987
Q ss_pred CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000051 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2612)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2612)
.|.........++|.|..++.+.++.|+..|+++|+.++.... ...+.+ .
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~----------------------~------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAV----------------------I------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHH----------------------H-------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHH----------------------H-------
Confidence 5544444567899999999999999999999999999985321 100100 0
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L 1646 (2612)
-..++|.+...+.+.++.++..|+.++++++.. .+......+ ..+++.+..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 012456677777777889999999999999863 211111122 35788999999998 999999999999999
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhHHH
Q 000051 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 1717 (2612)
Q Consensus 1647 ~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~~~ 1717 (2612)
+....+. .-..++|.|+..+.+. +..+|..++.+|+.++.....+.. ...++.++..+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632211 1236788888888766 456888999999998876444422 35688899999999999999999
Q ss_pred HHHHHhhhhhcc-------chhhh---HHh--HHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000051 1718 TLFKYLPRSLGV-------QFQNY---LQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2612)
Q Consensus 1718 ~~l~~L~~~~g~-------~f~p~---l~~--iip~ll~~L~d~~~~VR~~Al~al~~l 1764 (2612)
.++..+...... ...+| +.. .++.+.....++++.++..|...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999875533 11223 222 355566666677777777776665543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-10 Score=166.50 Aligned_cols=608 Identities=11% Similarity=0.091 Sum_probs=355.2
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCC----CchhhHHH
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEE----NFPDLVSW 1661 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~ 1661 (2612)
++..|+.|.+.+..+-+. .+ .......++.++ ++.+|-.|+..|...+..++++ ....+-..
T Consensus 21 d~~~r~~A~~~L~~~q~s-p~----------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-ST----------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-TT----------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-hh----------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 567777787777776542 11 233334444432 5788888888887777755555 44444445
Q ss_pred HHHHhcc----CCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCCh-hhHhHHHHHHHHhhhhhccc------
Q 000051 1662 LLDALKS----DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQ------ 1730 (2612)
Q Consensus 1662 L~~~L~~----~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~-~vR~~~~~~l~~L~~~~g~~------ 1730 (2612)
++..+.. ..+...|...++.++.++....++.|+.+++.+++.++..+. ..-...+..+..+.+-..+.
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~ 169 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTD 169 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCH
Confidence 5554442 234457778888888888777777777777777776654333 23334444555443332210
Q ss_pred ------------hhhh-HHhHHHHHHhhc----CCCChhHHHHHHHHHHHHHHHhhhchh--hhhHHHHhhccCCCchHH
Q 000051 1731 ------------FQNY-LQQVLPAILDGL----ADENESVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIFNDNWRI 1791 (2612)
Q Consensus 1731 ------------f~p~-l~~iip~ll~~L----~d~~~~VR~~Al~al~~lv~~~~~~~i--~~llp~L~~~l~d~~w~v 1791 (2612)
+... ++.+.+..+..+ ...++.++..+++++...+.-.+...+ +.+++.+...+.+ ..+
T Consensus 170 ~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~ 247 (980)
T 3ibv_A 170 VQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EEL 247 (980)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHH
T ss_pred HHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHH
Confidence 0001 222333333333 235667888888888877654333322 3466666666655 467
Q ss_pred HHHHHHHHHHHHHHhcCCcccc----------cccC--CCCCCccchHHH-------HHHHHHHh-Ch------------
Q 000051 1792 RQSSVELLGDLLFKVAGTSGKA----------LLEG--GSDDEGASTEAH-------GRAIIEVL-GR------------ 1839 (2612)
Q Consensus 1792 R~~a~~ll~~ll~~~~~~~~~~----------~~~~--~~ddd~~~~~~~-------~~~l~~~L-g~------------ 1839 (2612)
|..+++++.+++.+-.....+. .... .+++|.+-.+.. +..+...- ..
T Consensus 248 r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~ 327 (980)
T 3ibv_A 248 RCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCS 327 (980)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHH
Confidence 8888888888765421110000 0000 001111111111 11111110 01
Q ss_pred hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHHHHHHHhcCCC------------
Q 000051 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN---------TPKTLKEIMPVLMNTLISSLASSS------------ 1898 (2612)
Q Consensus 1840 ~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~---------~~~~l~~~l~~ll~~L~~~L~~~~------------ 1898 (2612)
.....+++.++.+..+.+.+|-..++..|..+... .+..++++++.+++.++..+.-++
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 23445777777888888889999999999988753 245678899999999999887321
Q ss_pred ----HHHHHHHHHHHHHHHHHhchh-hhh----hHHHHHhhhcC---CCChhHHHHHHHHHHHHHHhhChhhH-----HH
Q 000051 1899 ----SERRQVAGRALGELVRKLGER-VLP----SIIPILSRGLK---DPSASRRQGVCIGLSEVMASAGKSQL-----LS 1961 (2612)
Q Consensus 1899 ----~~~R~~A~~aL~~lv~~~~~~-~l~----~llp~L~~~L~---d~~~~vR~~a~~aL~~li~~~~~~~l-----~~ 1961 (2612)
.+.|.... .+-+.+..+|+. +++ .+.+.+.+.+. +.+|..+.+++.+++.+.+.+..... .+
T Consensus 408 ~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~ 486 (980)
T 3ibv_A 408 EAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDK 486 (980)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSC
T ss_pred HHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccc
Confidence 12454444 555666666655 455 56666666553 35688899999998887665543111 13
Q ss_pred hHhHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhccccc
Q 000051 1962 FMDELIPTIRTALC-----DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAV 2036 (2612)
Q Consensus 1962 ~l~~ll~~l~~~L~-----D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~v 2036 (2612)
+++.+++.+...+. ++++.||..++.++++..+.+... .+++|.+++.+-++-
T Consensus 487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l~~~L~~ll~~~-------------------- 544 (980)
T 3ibv_A 487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAIPALIEYFVGPR-------------------- 544 (980)
T ss_dssp CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTHHHHHHHHTSTT--------------------
T ss_pred hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHhccc--------------------
Confidence 45667777777654 789999999999999987765431 233444333221100
Q ss_pred ccccchhhcc--CCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC-----CC----------------HHHHHH
Q 000051 2037 LPHILPKLVH--LPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DD----------------MDVQSL 2093 (2612)
Q Consensus 2037 lp~Lip~L~~--~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~-----~~----------------~~vr~~ 2093 (2612)
.+.+ ..++..++.++..+.+.++..+.+|++.|+..+-..+.- .+ .+-+-.
T Consensus 545 ------gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~ 618 (980)
T 3ibv_A 545 ------GIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLY 618 (980)
T ss_dssp ------TTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHH
T ss_pred ------cccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHH
Confidence 0111 124445778888888888888999999999888777642 11 113555
Q ss_pred HHHHHHHhhhhccc------ccHHHHHHHHH----hhcCCC----ChhHHH-HHHHHHHHHHHhcccc------hhccHH
Q 000051 2094 AKEAAETVTLVIDE------EGVESLVSELL----KGVGDN----QASIRR-SSAYLIGYFYKNSKLY------LVDEAP 2152 (2612)
Q Consensus 2094 a~~al~~l~~~~~~------~~l~~ll~~Ll----~~l~~~----~~~vR~-~A~~~L~~l~~~~~~~------~~~~~~ 2152 (2612)
..++++.++...+. ..++.+++.++ ..+... +...+. ..+.++|.+.+..+.. +...+.
T Consensus 619 L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~ 698 (980)
T 3ibv_A 619 LFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFN 698 (980)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHH
Confidence 77888888876531 23444444433 333221 221211 4566678877754321 334556
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhh
Q 000051 2153 NMISTLIVLLS--DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPL 2230 (2612)
Q Consensus 2153 ~il~~L~~ll~--d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~i 2230 (2612)
++++.++..++ ..+..||+++..++.+++...+.+.+ ++
T Consensus 699 ~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~---------------------------------------p~ 739 (980)
T 3ibv_A 699 KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML---------------------------------------PK 739 (980)
T ss_dssp HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT---------------------------------------TT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHH---------------------------------------HH
Confidence 66777766666 56788999999999998876654332 33
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHH
Q 000051 2231 LPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2612)
Q Consensus 2231 lp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~ 2278 (2612)
+|.+++.+.++ +...-......++.++...+. .+.+.+..++.|++.
T Consensus 740 lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~-~~~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 740 VPQLISILLNSIDMNELVDVLSFISQLIHIYKD-NMMEITNRMLPTLLM 787 (980)
T ss_dssp HHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTT-TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34333333321 222233456777888888874 477777777777665
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-13 Score=179.86 Aligned_cols=350 Identities=13% Similarity=0.125 Sum_probs=254.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc---chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1339 i~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~---~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
++.+++.|.. ++...|..|+..|..++..... ..+....+++.|.+++.+..++.+|..|+.+++.++.+.+. ..
T Consensus 89 i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QT 166 (530)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HH
Confidence 4455555543 3467778888888877654221 12223467888888888765799999999999998864322 11
Q ss_pred hhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1416 PYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1416 ~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
..+ ...+|.++..+.++++.||..|..++..+...-+.. .+ ..++|.++..+.+.++.++..++.+|+.++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 222 257899999999999999999999999997643222 11 467899999999988999999999999999764
Q ss_pred -chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000051 1490 -PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2612)
Q Consensus 1490 -p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2612)
+..-......++|.|..++.+.++.||..|+++|+.++... +.. ...+.+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~~---~~~~~~------------------------ 297 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEA---IQAVID------------------------ 297 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHH---HHHHHH------------------------
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HHH---HHHHHh------------------------
Confidence 43333345788999999999999999999999999998532 110 000000
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
..++|.+...+.+.++.+|..++.++++++.. .+......+ ..+++.+..++.++++.+|..|+.+|+.++
T Consensus 298 ------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 298 ------VRIPKRLVELLSHESTLVQTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp ------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC--CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12456677777788889999999999998863 211111112 368899999999999999999999999998
Q ss_pred hhhCCC---Cc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh--hhH-----HhHhHHHHHhccCCChhhHhHH
Q 000051 1648 RGMGEE---NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF-----EHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1648 ~~~g~~---~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~l-----~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
....+. .+ ..++|.|+..+.+. +..+|..++.+|+.++...+. +.. ..++|.++..+.+.++.+|..+
T Consensus 370 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 370 AGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 632211 11 35788888888654 456889999999999876544 322 3478899999999999999999
Q ss_pred HHHHHHhhhhhc
Q 000051 1717 LTLFKYLPRSLG 1728 (2612)
Q Consensus 1717 ~~~l~~L~~~~g 1728 (2612)
+.++..+.....
T Consensus 449 l~aL~~l~~~~~ 460 (530)
T 1wa5_B 449 LDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999887553
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=165.38 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=169.6
Q ss_pred cCCChHHHHHHHHHHHH-HHhhhCcc---hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccch-hhHHHH
Q 000051 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2612)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~-l~~~lg~~---~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~-~~~~-~~v~~i 1421 (2612)
.+.+|.+|++|...|.. ++.+.+.- ......+++.|.+.+.++.|..+|..|+.+++.++++++ ..|. +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 56789999999999999 88653321 112236888899999444489999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---h-HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc---hhhh
Q 000051 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2612)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p---~~l~ 1494 (2612)
+|.++..++|..+.||+++..++..++..+++. . ...+++.++..|++++|++|.+++.+|+.++...+ .++.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 999999999999999999999999999987543 2 56899999999999999999999999999998766 6788
Q ss_pred hhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHH
Q 000051 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2612)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~L 1542 (2612)
.++ +.++|.+.++++|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987777776664
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-12 Score=176.48 Aligned_cols=389 Identities=14% Similarity=0.103 Sum_probs=284.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh-hHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC
Q 000051 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1576 ~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
..+|.+...+.+.++.+|..|+..+..++..-..+ .... .-..++|.+..++.++ ++.+|..|+.+|+.++....+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~-~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP-PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC-SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34677788888888999999999999987642121 1111 1246889999999987 8999999999999998632111
Q ss_pred --C--chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh--hh-H-HhHhHHHHHhccCCChhhHhHHHHHHHHhhh
Q 000051 1654 --N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2612)
Q Consensus 1654 --~--~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~-l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~ 1725 (2612)
. -...+|.|+..+.+. +..+|..++.+|+.++..... .. . ...+|.++..+.+.++.+|..++.++..++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 1 146788888888765 466888999999988753211 11 1 4578899999988999999999999999987
Q ss_pred hh-ccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh---chh-hhhHHHHhhccCCCchHHHHHHHHHHH
Q 000051 1726 SL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL-PLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2612)
Q Consensus 1726 ~~-g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~---~~i-~~llp~L~~~l~d~~w~vR~~a~~ll~ 1800 (2612)
.- +..-..+...++|.++..+.++++.+|..++.++..+...... ..+ ..++|.+...+.+.+|.+|..++..++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 54 2222345677999999999999999999999999887743221 112 247788888889999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH
Q 000051 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2612)
Q Consensus 1801 ~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~ 1880 (2612)
.+... + + .....+.+ ..+++.+...+.+.++.+|..|+.+++.++...+....
T Consensus 325 ~l~~~-------------~---~----~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 325 NIVTG-------------N---D----LQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp HHTTS-------------C---H----HHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHcC-------------C---H----HHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87421 0 0 01111111 13566666677888999999999999999987766555
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch--h-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000051 1881 EIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1881 ~~l-~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~--~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2612)
.++ ..+++.++..+.+.++.+|..|+.+|+.++...+. . ....++|.|...+.++++.+|..++.+|..++.
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444 35677888888888999999999999999886443 2 124578888888999999999999999999876
Q ss_pred hhChhh------HHHhH-----hHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1953 SAGKSQ------LLSFM-----DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1953 ~~~~~~------l~~~l-----~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
...... ..++. ...++.+...+.++++++++.|..++..+.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 543210 11122 234677777888999999999888777664
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-09 Score=155.79 Aligned_cols=384 Identities=12% Similarity=0.095 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhc--hhhhhhHHH
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-----SSSERRQVAGRALGELVRKLG--ERVLPSIIP 1926 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~-~l~~~l~~ll~~L~~~L~~-----~~~~~R~~A~~aL~~lv~~~~--~~~l~~llp 1926 (2612)
+.+|..|++++-++++++.+... ...++++.+++.++..+.+ +...+|..++.++|...+.+. +..++.+++
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~ 543 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 36899999999999999886543 4678999999999988763 344566778889988777654 347888889
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhH-------HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l-------~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
.+.+++.++++.+...+|.++..++..++.... .+|++.++..+.....+-++.-+..+.++++.+....+..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 999999988999999999999999888775432 4688999999988888778888888999999998877643
Q ss_pred h-hhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCC-cc--hhHHHHHHHHHHHhCCChhhhHhhH
Q 000051 2000 A-IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LS--AFNAHALGALAEVAGPGLNFHLGTI 2075 (2612)
Q Consensus 2000 ~-~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~-~~--~~~~~al~~La~~~g~~l~~~l~~i 2075 (2612)
. ..+++..++..+ ...+.+++...+. -|.+ +.++. .. ....+++++++...|..+.|++..+
T Consensus 624 ~~~~~~l~~L~~~~---------~~~~~~l~~~~~~--~~~~---~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i 689 (1023)
T 4hat_C 624 AERNRLLSDLMQLP---------NMAWDTIVEQSTA--NPTL---LLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHI 689 (1023)
T ss_dssp HHHHHHHHHHTHHH---------HHHHHHHHHHHHH--CTTG---GGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred hhHHHHHHHHHHhH---------HHHHHHHHHHHhc--Cchh---hcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 2 333333333221 1112222210000 0000 00000 00 0123466677777899999999999
Q ss_pred HHHHHHhcCC-----------------CCHHH------HHHHHHHHHHhhhhccc------ccHHHHHHHHHhhcCCCCh
Q 000051 2076 LPALLSAMGD-----------------DDMDV------QSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQA 2126 (2612)
Q Consensus 2076 l~~Ll~~L~~-----------------~~~~v------r~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~~~~~ 2126 (2612)
++.+++..+. ..+.+ |......+...+....+ .-+++++..++.-.....+
T Consensus 690 ~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~ 769 (1023)
T 4hat_C 690 YYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVP 769 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCCh
Confidence 9888865321 11222 22233333333332221 2356666666665555556
Q ss_pred hHHHH-HHHHHHHHHHhcccchhccHHHHHHHHHH----HhcC---CChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2127 SIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2127 ~vR~~-A~~~L~~l~~~~~~~~~~~~~~il~~L~~----ll~d---~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
..|.. .+.++..++...+..+.+.++.++..++. ++++ ..++.|..-..-+.++..+.+...+
T Consensus 770 ~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~--------- 840 (1023)
T 4hat_C 770 DARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL--------- 840 (1023)
T ss_dssp GGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH---------
T ss_pred hhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHH---------
Confidence 66654 45566677777777777778877777654 4443 4577787777777777665543211
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCC-cCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh----h----hhhhch
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE----Q----SLKEFV 2269 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p-~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~----~----~l~p~v 2269 (2612)
.+| .....++..++-++.+...++-..+...+.+++..... + -++.|.
T Consensus 841 -----------------------~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~ 897 (1023)
T 4hat_C 841 -----------------------ELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYF 897 (1023)
T ss_dssp -----------------------TSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred -----------------------cCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 111 22344566667778888888888888888777754431 1 122344
Q ss_pred hhhhHHHHHHhcCCC
Q 000051 2270 IPITGPLIRIIGDRF 2284 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~ 2284 (2612)
..+..-.+.++.|..
T Consensus 898 ~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 898 FIFVSETFFVLTDSD 912 (1023)
T ss_dssp HHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhCch
Confidence 444444555666553
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-12 Score=171.89 Aligned_cols=385 Identities=15% Similarity=0.119 Sum_probs=281.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhhH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH-
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ- 1454 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~-~~~~~~v-~~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~- 1454 (2612)
-++.+.+.+.+. ++..|..|+.++..++.+.+ ......+ ..++|.++.++.+++ +.+|..|..++..++...+..
T Consensus 75 ~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 355666677766 79999999999988876543 2122222 268999999999886 999999999999998743332
Q ss_pred -hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhh-cCCCHHHHHHHHHHHHHHHhh
Q 000051 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.+ ...+|.++..|.+++..++..|+.+|+.++...+......+ ..++|.|+.++ .+.++.++..|+++|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 11 35889999999999999999999999999976554221111 35788899999 678999999999999999864
Q ss_pred cCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC
Q 000051 1530 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2612)
Q Consensus 1530 ~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~ 1609 (2612)
..++.. .....++|.|.+.+.+.++.++..++.++++++.. .
T Consensus 234 ~~~~~~------------------------------------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~ 275 (528)
T 4b8j_A 234 KPQPSF------------------------------------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--T 275 (528)
T ss_dssp SSCCCH------------------------------------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--C
T ss_pred CCCCcH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--C
Confidence 321110 01123566666777777888999999999998753 2
Q ss_pred CCcchhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 000051 1610 PKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2612)
Q Consensus 1610 ~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~ 1684 (2612)
....... -..+++.+..++.++++.+|..|+.+|+.++...... .-..++|.|...+.+..+..+|..++.+++.
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 1111111 2358899999999999999999999999998633211 1145788888888766356788899999999
Q ss_pred HHHHhChh--h-H-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHHHHH
Q 000051 1685 VLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAAL 1758 (2612)
Q Consensus 1685 i~~~~g~~--~-l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~~Al 1758 (2612)
++...... . . ..++|.++..+.+.++.+|..++.+++.++.........|+ ..+++.+...+.+.++.++..++
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 87532211 1 1 36788899988888999999999999999887555555665 35899999999999999999999
Q ss_pred HHHHHHHHHhhhc----------hhh-----hhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1759 GAGHVLVEHYATT----------SLP-----LLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1759 ~al~~lv~~~~~~----------~i~-----~llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
.++..++...... ... ..++.+.....+.+..++..+..++..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999887644321 111 1345566667778888888888877765
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-11 Score=170.51 Aligned_cols=471 Identities=13% Similarity=0.076 Sum_probs=304.3
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh-hhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcCChhHh
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEIA 1536 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~-~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2612)
.+|.|+..|.++++.+|..|+.+|+.++...+.... ...+.+++.+++.|.+. ++++|..|+.+|..++.. ++.
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~---~~~- 90 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG- 90 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS---HHH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---hhh-
Confidence 455555566666666666666777766654332211 11246788888888764 899999999999987653 110
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1537 ~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
+. .+. -...+|.|.+.+.+.++.++..|+.++.+++... + .....+
T Consensus 91 -----------------~~---~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~-~~~~~v 136 (644)
T 2z6h_A 91 -----------------LL---AIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-E-GAKMAV 136 (644)
T ss_dssp -----------------HH---HHH------------TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-T-THHHHH
T ss_pred -----------------HH---HHH------------HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-c-hhHHHH
Confidence 00 000 0125677777788888899999999999998752 1 122222
Q ss_pred -HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh
Q 000051 1617 -IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2612)
Q Consensus 1617 -l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2612)
-...+|.+..++.++++.++..+..+|..++...++. .-...++.|+..+.+......+..++..+..+...-..
T Consensus 137 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~ 216 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216 (644)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTH
T ss_pred HHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCccc
Confidence 2568999999999999999999999999988632211 11356788888887765554555555555555421111
Q ss_pred -hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000051 1692 -VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2612)
Q Consensus 1692 -~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~ 1768 (2612)
..+ ...++.++..+.+.+..+++.++.++..++...+.. .....++|.++..+.++++.+|..+..++..+....
T Consensus 217 ~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 111 346788888888889999999999999998764431 234578999999999999999999999988776421
Q ss_pred hh--c-hh-hhhHHHHhhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhH
Q 000051 1769 AT--T-SL-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2612)
Q Consensus 1769 ~~--~-~i-~~llp~L~~~l~d--~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~ 1842 (2612)
.. . .. ...+|.+.+.+.+ +.+.+|..++..++.+... +.++ +.....+.+
T Consensus 295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~--------------~~~~---~~~q~~v~~------- 350 (644)
T 2z6h_A 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQEA---EMAQNAVRL------- 350 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STTH---HHHHHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC--------------CchH---HHHHHHHHH-------
Confidence 11 1 11 1245555555543 2378999999999887311 0010 001111111
Q ss_pred HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcChhhHHHHH-HHHHHHHHHHhcCC----------------------C
Q 000051 1843 NEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS----------------------S 1898 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~-~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~ll~~L~~~L~~~----------------------~ 1898 (2612)
...++.+...+.+. +..+|..|+.+++.++.+.... ..+. ...++.++..+.+. +
T Consensus 351 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~ 429 (644)
T 2z6h_A 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429 (644)
T ss_dssp TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCH
T ss_pred ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccH
Confidence 12355555555554 4799999999999998643321 2221 23445555555432 3
Q ss_pred HHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHH
Q 000051 1899 SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTA 1973 (2612)
Q Consensus 1899 ~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~ 1973 (2612)
..++..+..+|..++...... .....+|.|...+.+++++++..++.+|+.+... + .....+ ...++.+...
T Consensus 430 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~-~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 430 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--H-HHHHHHHHcCChhHHHHH
Confidence 455666777777665432111 1245678888889999999999999999987532 1 122222 3457788889
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhC
Q 000051 1974 LCDSILEVRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1974 L~D~d~~Vr~~A~~al~~l~~~~g 1997 (2612)
+.+++++||..|+.+++.+....+
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999865443
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-11 Score=172.39 Aligned_cols=460 Identities=11% Similarity=0.075 Sum_probs=316.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC-cchh
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-----~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~~l 1374 (2612)
.++.|+..|+++++.+|..++.+|..+....... ....++.++..|..+++...|..|+..|..+..... ...+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 5778888889999999999999999887544321 235788888888876678899999999998775422 1122
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000051 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2612)
Q Consensus 1375 ~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2612)
.....++.|.+++.+. ++..|..|+.++..++.........++ ...+|.++..+.++++.++..+..++..+...-+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 2336788888888887 799999999999999977543233333 36899999999999999999888888888643221
Q ss_pred H--hH--HhHHHHHHhhhcCCC-hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1454 ~--~v--~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
. .+ ...+|.|++.+.+.+ ...+..++.+|..++.+....-.-.-...++.+.+++.+.+..++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 11 345777888777654 455677888888887643221111113578999999999999999999999999976
Q ss_pred hcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccC
Q 000051 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2612)
Q Consensus 1529 ~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~ 1608 (2612)
...+.. ....++|.|.+.+.+.++++|..++.++++++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 432100 0113566666677777788899999999888763
Q ss_pred CCCcchh-hHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCCHHHHHHH
Q 000051 1609 EPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2612)
Q Consensus 1609 ~~~~l~~-~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~~g~~-------~~~~ll~~L~~~L~~~~~~~~R~~a 1678 (2612)
.++.... .-...++.|..++.+. .+.+|..|+.+|+.++...+++ .....+|.+.+.|.+.....+|..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 2111111 1124677777777653 3899999999999997543321 0135688888888876555688888
Q ss_pred HHHHHHHHHHhChh-hH--HhHhHHHHHhccCC----------------------ChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1679 AQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1679 a~~L~~i~~~~g~~-~l--~~llp~l~~~~~~~----------------------~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
+..++.+...-... .+ ...+|.+++.+.+. +..+++.++.++..++..-.. ..
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~ 451 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RI 451 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--HH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--HH
Confidence 88888876421111 11 34566666655443 245666777777777654322 22
Q ss_pred hH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchh--hhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1734 YL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1734 ~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~-~~~i--~~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
.+ ...+|.+...+.+.++.++..+..++..+...-. ...+ ...++.+.+.+.+++..+|..+...++.+.
T Consensus 452 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22 3478999999999999999999988877653200 0111 124667778888999999999999998873
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=163.31 Aligned_cols=194 Identities=18% Similarity=0.230 Sum_probs=165.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000051 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2612)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~i~-~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~ 1419 (2612)
+++.+ ++.+|..|++|+.+|..++.+.+. ..-....+++.+...+. +. +..+|.+|+.+++.++..++..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 466899999999999999987432 11112368888999995 66 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC-ch-hhhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~-p~-~l~~~L 1497 (2612)
.++|.++..++|+++.||+++..++..++...+ +..++|.+...+++++|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999988764 5789999999999999999999999999977654 55 357789
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
+.++|.+..+++|++++||.+|..+++.++..+++..+..+++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999988544554443
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-12 Score=172.09 Aligned_cols=478 Identities=14% Similarity=0.083 Sum_probs=302.6
Q ss_pred HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
++.+....+..++.+.+++...|+-+...+..++...++. .--+++.+.+-++|+++.+|..|.++|+.++.
T Consensus 65 G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~----~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV----HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---- 136 (618)
T ss_dssp TCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----
T ss_pred CCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----
Confidence 3345566777778888888888887777777666544432 23456777788899999999999999998873
Q ss_pred hh-HhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCC
Q 000051 1533 PE-IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2612)
Q Consensus 1533 ~~-i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~ 1610 (2612)
++ ...++|.+.+.+.|++..+| .|+.++... .. ..+.....+++.+...+.|+++.++..|+.+++.++.. ++
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l--~~-~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--~~ 211 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV--IR-KVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--SP 211 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--HH-HCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--HH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HH-HChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--Ch
Confidence 43 46778889999999999988 455544431 00 11223345667777888999999999999999988753 22
Q ss_pred CcchhhHhhhHHHHHHHhc---------------CCCHHHHHHHHHHHHHHHhhhCC--CCchhhHHHHHHHhccCC--C
Q 000051 1611 KDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDN--S 1671 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~---------------d~~~~VR~~A~~aL~~L~~~~g~--~~~~~ll~~L~~~L~~~~--~ 1671 (2612)
+ ...++..++|.+...|. .+++..+....++++.++..-.+ +.+.++++.+........ +
T Consensus 212 ~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 212 D-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence 1 12233344554444433 24788899999999988753211 123334444433221111 1
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
..+...++.++..+.. ........++.+...+.++++.+|..++..++.++...+..|.+| .+.++.++.|++.
T Consensus 291 ~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~~l~d~d~ 364 (618)
T 1w63_A 291 NAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIVDCLKDLDV 364 (618)
T ss_dssp HHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHHGGGSSCH
T ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHHHHccCCCh
Confidence 2344455555443211 111123345666667788899999999999999998877666555 4566777889999
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHH
Q 000051 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~ 1831 (2612)
+||..+++.+..++. ...++.+++++...+.+.+..+|..++..++.+....++. .
T Consensus 365 ~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~----------------~----- 420 (618)
T 1w63_A 365 SIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS----------------K----- 420 (618)
T ss_dssp HHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC----------------H-----
T ss_pred hHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc----------------H-----
Confidence 999999888776543 3345667788877777778889999999999886432100 0
Q ss_pred HHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911 (2612)
Q Consensus 1832 ~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~ 1911 (2612)
..++..+...+.+....++..++..+..++...|......++.+...+.... ..+.. ...+++++|+
T Consensus 421 -----------~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~-~~~~~-~~~~~wilGE 487 (618)
T 1w63_A 421 -----------RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY-SQQPL-VQVAAWCIGE 487 (618)
T ss_dssp -----------HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC-SCSHH-HHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc-ccHHH-HHHHHHHHhh
Confidence 1122222222233333455666777777777666543344555444443211 12343 4468999999
Q ss_pred HHHHhchh---------hh-hhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcH
Q 000051 1912 LVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2612)
Q Consensus 1912 lv~~~~~~---------~l-~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~ 1979 (2612)
........ +. ..+++.+...+. ..++.+|..+..++..+....+. ..+.+...+.....|.|.
T Consensus 488 y~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-----~~~~l~~~L~~~~~~~d~ 562 (618)
T 1w63_A 488 YGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-----TVNRIKKVVSIYGSSIDV 562 (618)
T ss_dssp HHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-----CHHHHHHHHHHHTTCSCH
T ss_pred hHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHhcCCCCH
Confidence 98765321 11 234444444443 56889999999999988665432 123444445556778899
Q ss_pred HHHHHHHHHHHHH
Q 000051 1980 EVRESAGLAFSTL 1992 (2612)
Q Consensus 1980 ~Vr~~A~~al~~l 1992 (2612)
+||+.|...+.-+
T Consensus 563 evrdRA~~y~~ll 575 (618)
T 1w63_A 563 ELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998866554
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-11 Score=168.05 Aligned_cols=461 Identities=11% Similarity=0.068 Sum_probs=306.2
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC-cc
Q 000051 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-IS 1372 (2612)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-----~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~ 1372 (2612)
...++.++..++++++.+|..++.+|..+....... ....++.+++.|..++++..|..|+.+|..+..... ..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 346788888899999999999999998876433211 135788888888777678999999999999875422 11
Q ss_pred hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1373 ~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
.+...+.++.+.+.+.+. ++..|..|+.++..++...+..-.... ...+|.++..+.++++.+|..+..++..+...-
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 222336788888888887 799999999999999876443211121 368999999999999999999988888776421
Q ss_pred cHH--h-H-HhHHHHHHhhhcCCC-hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1452 SAQ--G-V-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1452 ~~~--~-v-~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
+.. . + ...+|.+++.+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 111 1 1 345777777776544 4455567778888875422111111146889999999999999999999999999
Q ss_pred HhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1527 GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1527 ~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
+....... ....++|.+.+.+.+.+++++..++.++++++..
T Consensus 255 ~~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 255 SDAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HTTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred hcCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 86432100 0113566666677777788889999999888752
Q ss_pred cCCCCcchhh-HhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC-----C--chhhHHHHHHHhccCCCHHHHH
Q 000051 1607 VTEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-----N--FPDLVSWLLDALKSDNSNVERS 1676 (2612)
Q Consensus 1607 ~~~~~~l~~~-l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g~~-----~--~~~ll~~L~~~L~~~~~~~~R~ 1676 (2612)
+++..... -...++.+.+++.+ .++.+|..|..+|+.++...++. . -...+|.+...+.++.....|.
T Consensus 297 --~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 297 --NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred --CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence 21111111 12356777777764 34899999999999997543221 0 1246788888888766556888
Q ss_pred HHHHHHHHHHHHhChh-hH--HhHhHHHHHhccCCChhhHhHH----------------------HHHHHHhhhhhccch
Q 000051 1677 GAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGY----------------------LTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1677 ~aa~~L~~i~~~~g~~-~l--~~llp~l~~~~~~~~~~vR~~~----------------------~~~l~~L~~~~g~~f 1731 (2612)
.++..++.+...-... .+ ..++|.+++.+.+.++.+|..+ +.++..++.... .
T Consensus 375 ~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~--~ 452 (529)
T 1jdh_A 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--N 452 (529)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH--H
T ss_pred HHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCch--H
Confidence 8888888876421111 11 3467777777766666666544 344444433211 0
Q ss_pred hhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-hhchh--hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1732 QNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY-ATTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1732 ~p~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-~~~~i--~~llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
...+ ...++.+...+.+++++++..+..++..+...- ....+ ...++.+.+.+.+++..+|..+...+..+
T Consensus 453 ~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1111 236789999999999999999988887765210 00111 12557777778888888888887776543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=167.71 Aligned_cols=465 Identities=12% Similarity=0.070 Sum_probs=288.1
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh-hhhhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l-~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
+|.++..|.+++..+|..|+.+|+.++...+... ....+..++.+++.+.+ +++.+|..|+.+|..++.. ++.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~-- 93 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG-- 93 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chh--
Confidence 3444444444444444444555555543221110 00123567788888864 4899999999999988642 111
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh-
Q 000051 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2612)
+.. +. -...+|.+.+.+.+.++.++..++.++.+++..... .....
T Consensus 94 ----------------~~~---i~------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~ 140 (529)
T 1jdh_A 94 ----------------LLA---IF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVR 140 (529)
T ss_dssp ----------------HHH---HH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred ----------------HHH---HH------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 000 00 013567777778778889999999999999874211 11111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT- 1691 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~- 1691 (2612)
-...+|.+.+++.++++.+|..+..++..++....+. .-.+.++.++..+++......+..+...+..+...-..
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 220 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccH
Confidence 2468899999999999999999999999887531110 11245777888787766554444455555554321110
Q ss_pred hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000051 1692 VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1692 ~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~ 1769 (2612)
..+ ...++.++..+.+.++.+++.++.++..++...+.. .....++|.+++.+.++++.+|..+..++..+.....
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 111 356888888888889999999999999998765431 2345789999999999999999999999888754211
Q ss_pred h--ch-h-hhhHHHHhhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHH
Q 000051 1770 T--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2612)
Q Consensus 1770 ~--~~-i-~~llp~L~~~l~d--~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~ 1843 (2612)
. .. . ...+|.+.+.+.+ +++.++..++..++.+... +.+ .+.....+.+.
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--------------~~~---~~~~~~~i~~~------- 354 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQE---AEMAQNAVRLH------- 354 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STT---HHHHHHHHHHT-------
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--------------Cch---HHHHHHHHHHc-------
Confidence 0 00 1 1245555555543 4588999999999887311 001 11111122211
Q ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHhcChhhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHH------------
Q 000051 1844 EVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGRAL------------ 1909 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l-~~ll~~L~~~L~~~~~~~R~~A~~aL------------ 1909 (2612)
..++.+...+.+.. +.+|..++.+++.++.+... ...+. ..+++.++..+.+.++.+|..|.+++
T Consensus 355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~ 433 (529)
T 1jdh_A 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433 (529)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH
T ss_pred CChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH
Confidence 12445555555554 69999999999999864332 22222 24567777777766666666554443
Q ss_pred ----------HHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHHh
Q 000051 1910 ----------GELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTAL 1974 (2612)
Q Consensus 1910 ----------~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L 1974 (2612)
..++...... .-...+|.+...+.+++++++..++.+++.+... +. ....+ ...++.+...+
T Consensus 434 ~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~-~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HH-HHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HH-HHHHHHHcCChHHHHHHh
Confidence 3333211100 1235668888889999999999999999987432 11 11111 35678888999
Q ss_pred cCCcHHHHHHHHHHHHHH
Q 000051 1975 CDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1975 ~D~d~~Vr~~A~~al~~l 1992 (2612)
.+++++|+..|..++..+
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999988765
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-11 Score=160.61 Aligned_cols=476 Identities=14% Similarity=0.111 Sum_probs=301.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
..+.+...|+...-.+..++...++ ..--.++.+.+-+.++++.+|..|.++|+.+. .+...+.++|.+.+++
T Consensus 79 ~~s~~~~~Krl~Yl~~~~~~~~~~e----~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L 151 (618)
T 1w63_A 79 IASQKFTDKRIGYLGAMLLLDERQD----VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLL 151 (618)
T ss_dssp HHSSSHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 3466778888777777777665543 33345677777889999999999999999886 3456788899999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLH 2010 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g--~~~~~~ilp~Ll~ 2010 (2612)
.++++.+|..|+.+++.+.... ++.+ +.+++.+...+.|.|+.|+.+|..++..+..... ...+..++|.+++
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~-p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~ 226 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKV-PELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVR 226 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHC-GGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHC-hHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 9999999999999999987643 3333 4567777888999999999999999988854321 1234455666665
Q ss_pred hccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC--hhhhHhhHHHHHHHhc---CC
Q 000051 2011 ALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG--LNFHLGTILPALLSAM---GD 2085 (2612)
Q Consensus 2011 ~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~--l~~~l~~il~~Ll~~L---~~ 2085 (2612)
.|.+ ++..+ ..-.+-+....+ | ......+..+......+ ..+.+..+++.++... ++
T Consensus 227 ~L~~-------------~~~~~--~~~~~~~~~~~~-~--~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 227 ILKN-------------LIMSG--YSPEHDVSGISD-P--FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHHH-------------HHHSC--CCTTTCSSSSSC-H--HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSST
T ss_pred HHHH-------------HHcCC--CCccccccCCCC-C--hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccc
Confidence 4432 11000 000000000000 0 01122333333322111 1122223444444332 22
Q ss_pred CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCC
Q 000051 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165 (2612)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~ 2165 (2612)
.+..+.-.++.++..+.. ........++.|...+.++++.+|..|+.+++.+....+..+.++ ...++.++.|+
T Consensus 289 ~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~~l~d~ 362 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIVDCLKDL 362 (618)
T ss_dssp HHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHHGGGSS
T ss_pred hHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHHHHccCC
Confidence 234555555555544311 112233466777777888899999999999999988765545444 34677788999
Q ss_pred ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHH
Q 000051 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245 (2612)
Q Consensus 2166 d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~ 2245 (2612)
|..+|..+.+.|..++... .+..+++.+...+.+.+.+.
T Consensus 363 d~~Ir~~alelL~~l~~~~-----------------------------------------nv~~iv~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNGN-----------------------------------------NIRGMMKELLYFLDSCEPEF 401 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSS-----------------------------------------STHHHHHHHHHHHHHCCHHH
T ss_pred ChhHHHHHHHHHHHHcccc-----------------------------------------cHHHHHHHHHHHHHhCCHHH
Confidence 9999999999888875421 12334455555566678899
Q ss_pred HHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcC-
Q 000051 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD- 2324 (2612)
Q Consensus 2246 r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d- 2324 (2612)
|..+..+|+.++...+ .....|++.+ +..+.+. ...++..++..+..++++.+.. + ......+.+.+.+
T Consensus 402 r~~~v~~I~~la~k~~-~~~~~~v~~l----l~lL~~~-~~~v~~~~~~~l~~ii~~~p~l-~---~~~v~~L~~~l~~~ 471 (618)
T 1w63_A 402 KADCASGIFLAAEKYA-PSKRWHIDTI----MRVLTTA-GSYVRDDAVPNLIQLITNSVEM-H---AYTVQRLYKAILGD 471 (618)
T ss_dssp HHHHHHHHHHHHHSSC-CCHHHHHHHH----HHHHHHT-GGGSCSSHHHHHHHHHHHSCST-H---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHH----HHHHHhc-cchhHHHHHHHHHHHHhcChhH-H---HHHHHHHHHHHhcc
Confidence 9999999999998765 4455665554 4444433 2345566777788888776542 2 2234444455543
Q ss_pred -CCHHHHHHHHHHHHHHHhccC------------ChhHHHHHHHHhhh--cCCHHHHHHHHHHHHHHHHhcCCCcChHHH
Q 000051 2325 -STRTVRSSAALALGKLSALST------------RVDPLVGDLLSSLQ--VSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2612)
Q Consensus 2325 -~~~~vR~~Aa~aLg~L~~~~~------------~~~~~l~~Ll~~l~--~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2612)
.++.+...+++++|.+...-. ....+++.|...++ ..+..+|..++.|+..+....+. ..
T Consensus 472 ~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-----~~ 546 (618)
T 1w63_A 472 YSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-----TV 546 (618)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-----CH
T ss_pred cccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-----hH
Confidence 244555679999999954211 11223444444343 45688999999999888776543 24
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
+.+...|.....+.+.++|..|...+.-+..
T Consensus 547 ~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 547 NRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 5566666667778899999998887766654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-11 Score=159.78 Aligned_cols=393 Identities=15% Similarity=0.157 Sum_probs=272.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---HHhH--HhHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLS---AQGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~---~~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
++.++..+...++.++..|..+++.+.+.-. -+.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.+++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5667788888899999999999988865322 1222 4579999999975 45788999999999999877765433
Q ss_pred hh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH------hhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000051 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2612)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2612)
.. ...+|.|+.+|.++++.||+.|+++|+.++..- ++. ...++.|...+..++..
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~---------------- 200 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLS---------------- 200 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGG----------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccch----------------
Confidence 33 357899999999999999999999999998532 221 23445555555433221
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
.......+.++.++.+++..- .+..-......++|.|..++.+++++++..|+.+|+.++.
T Consensus 201 ------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 201 ------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp ------------------GSCHHHHHHHHHHHHHHHCCC-SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred ------------------hhhHHHHHHHHHHHHHHhhcc-cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 012345667778888888742 2222233456789999999999999999999999999876
Q ss_pred hhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh--h-H-HhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1649 ~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
...+. .-..++|.|.+.+.+.. ..++..++.+++.++...... . . ...++.+...+.++++.+|+.++.++
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 32211 12457888888887654 557888888888875432211 1 1 34566677778889999999999999
Q ss_pred HHhhhhhccchhhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHHHH
Q 000051 1721 KYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQS 1794 (2612)
Q Consensus 1721 ~~L~~~~g~~f~p~l-~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~-----~llp~L~~~l~d~~w~vR~~ 1794 (2612)
..++........... ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+...+.+++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999865433222222 248899999999999999999999998877644333222 26788888888899999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
+++.+..++...... . ..+.. ..+.+..| .+..+.....+.+..|++.|..++..++.
T Consensus 421 ~L~aL~nil~~~~~~---------~-----~~~~~-~~~iee~g------gl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKL---------G-----ETEKL-SIMIEECG------GLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTT---------T-----CHHHH-HHHHHHTT------HHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhc---------c-----chHHH-HHHHHHcC------cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999999887542110 0 01111 11222222 23333344567889999999999987764
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=157.36 Aligned_cols=395 Identities=15% Similarity=0.163 Sum_probs=273.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhCchhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~ia~~~p~~l 1493 (2612)
..++.++..+..+++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.. .+...+..|+.+|..++.+.+.+.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3467777888888899998888888887653211 122 5679999999964 557889999999999998776654
Q ss_pred hhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH------hhHHHHHHhhcCCCChhHHHHHHHHHhcccc
Q 000051 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2612)
Q Consensus 1494 ~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2612)
.... ...+|.|+.++.++++.||..|+++|+.++.. +++. ...++.|+..+.+++..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--~~~~r~~i~~~g~i~~Ll~lL~~~~~~-------------- 219 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--GSAFRDLVIKHGAIDPLLALLAVPDLS-------------- 219 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHTTCSSCGG--------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHcCCcHHHHHHHhccchh--------------
Confidence 3322 46889999999999999999999999999853 2222 23455555555443221
Q ss_pred ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1567 ~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L 1646 (2612)
.......+.++..+.+++..- .+..-......++|.|..++.+++++++..|+.+|+.+
T Consensus 220 --------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 220 --------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp --------------------GSCHHHHHHHHHHHHHHHCCC-TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred --------------------HhHHHHHHHHHHHHHHHHhcc-cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 012345667778888888642 22222334567899999999999999999999999998
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh--h-H-HhHhHHHHHhccCCChhhHhHHHH
Q 000051 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1647 ~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
+....+. ....++|.|+..+.+.+ ..++..++.+++.++.+.... . . ...++.+...+.++++.+|..++.
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 8643221 12457888888887654 557778888888876432211 1 1 346778888889999999999999
Q ss_pred HHHHhhhhhccchhhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHH
Q 000051 1719 LFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIR 1792 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l-~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~-----~llp~L~~~l~d~~w~vR 1792 (2612)
+++.++..-.......+ ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+...+.+++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~ 437 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 437 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence 99999864433222222 248899999999999999999999998877654333222 267888888889999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 000051 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2612)
Q Consensus 1793 ~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2612)
..+++.+..++...... . ..+.... +++..|. +..+.....+.+..|++.|..++..++
T Consensus 438 ~~~L~aL~nil~~~~~~---------~-----~~~~~~~-~iee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKL---------G-----ETEKLSI-MIEECGG------LDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHTT---------T-----CHHHHHH-HHHHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhc---------c-----ChHHHHH-HHHHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999998887542110 0 0111112 2222221 222333456778999999999988776
Q ss_pred h
Q 000051 1873 A 1873 (2612)
Q Consensus 1873 ~ 1873 (2612)
.
T Consensus 497 ~ 497 (529)
T 3tpo_A 497 S 497 (529)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=149.06 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=168.8
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc
Q 000051 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2612)
Q Consensus 1774 ~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~ 1853 (2612)
..+-|.+.+.+.+++|+.|.+++..+..++...++.. .. .+.+++..+...+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~----------~~------------------~~~~i~~~L~~~l 65 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE----------NG------------------EYGALVSALKKVI 65 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC----------CC------------------CCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC----------CC------------------CHHHHHHHHHHHh
Confidence 3455567788899999999999999999886532110 00 1123445555566
Q ss_pred c-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1854 S-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1854 ~-D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
. |.+..||..|+.+++.++...+..+.+|++.+++.++..+++++..+|..+..++..++...+ .+.++|.+...+
T Consensus 66 ~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l 142 (242)
T 2qk2_A 66 TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESL 142 (242)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 4 999999999999999999988888999999999999999999999999999999999987654 467888899999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChh-hHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~-~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp 2006 (2612)
+++++.+|..++.+++.++..+++. ...++++.++|.+...+.|++++||.+|..+++.+...+|...+.++++
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999988877655 3578899999999999999999999999999999999999866666544
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-10 Score=155.68 Aligned_cols=478 Identities=13% Similarity=0.108 Sum_probs=301.8
Q ss_pred HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
++.+....+.+++.+.+++...|+.+...+..++...++.+ --+++.+.+-++|+++.+|..|.++++.+..
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---- 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGS---- 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----
Confidence 34455667888888899999999988888888877666543 3345677778899999999999999999853
Q ss_pred hh-HhhHHHHHHhhc--CCCChhHH-HHHHHHHhccccccCChhhHh--hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1533 PE-IASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1533 ~~-i~~ivp~Ll~~l--~d~~~~~r-~al~~L~~~~~~~~i~~~~l~--~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
++ .+.++|.+.+.+ .|++.++| .|+-++... .. ..+.... .+++.+.+.+.|+++.++..|..++..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl--~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRL--YR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH--HH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--HH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 54 478899999999 89999998 344443321 11 1122222 5778888999999999999999999998874
Q ss_pred cCCCCcchhhHhhhHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCC
Q 000051 1607 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2612)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~-------------~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~ 1670 (2612)
+++.+.++.+.++..+.+++.++ +|-.+....+.++.++..-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 44456677777777777776432 5778888887777654321111 12334444444332111
Q ss_pred ---C-------HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1671 ---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1671 ---~-------~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
. ..+...++.++-.+. -..+........+...+.++++.+|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0 012222222222211 11223455666677777788999999999999999876542 134455566
Q ss_pred HHHhhcC-CCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000051 1741 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2612)
Q Consensus 1741 ~ll~~L~-d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ 1819 (2612)
.++.++. |++..||..+++.+..++ .++.++.++.++.+.+.+.+...|..++..++.+....+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 7777888 999999998888766654 33456677888877777777778888888888876543211
Q ss_pred CCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC-
Q 000051 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1898 (2612)
Q Consensus 1820 ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~- 1898 (2612)
.+.....+.+.+ .+....+...++..+..++...|. +++ ..+..++..+.++.
T Consensus 439 ------~~~~v~~Ll~ll----------------~~~~~~v~~ev~~~l~~ii~~~~~-~~~---~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLI----------------RIAGDYVSEEVWYRVIQIVINRDD-VQG---YAAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHH----------------HHHGGGSCSHHHHHHHHHHGGGCS-CHH---HHHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHH----------------HhhcccchHHHHHHHHHHHhCChh-HHH---HHHHHHHHHHcCccc
Confidence 011111111111 111112333444555555554443 222 12344555666543
Q ss_pred -HHHHHHHHHHHHHHHHHhchh--hhh-hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHh
Q 000051 1899 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1899 -~~~R~~A~~aL~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
...-..+++.+|+........ ..| .++..+...+.+.++.+|..++.++..+....+ + . .+.+...+....
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHHHh
Confidence 334455668888887665432 112 556667667778889999999999988765432 1 1 233333444445
Q ss_pred c--CCcHHHHHHHHHHHHH
Q 000051 1975 C--DSILEVRESAGLAFST 1991 (2612)
Q Consensus 1975 ~--D~d~~Vr~~A~~al~~ 1991 (2612)
. |.|.+||+.|...+.-
T Consensus 568 ~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 5 8899999999765433
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-10 Score=154.08 Aligned_cols=348 Identities=14% Similarity=0.125 Sum_probs=239.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000051 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~ 1416 (2612)
+.+++.+. +++...+..|...+..+...- +...+...+++|.|.+++.+..++..+..|..++..++.+-...-..
T Consensus 60 ~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33344443 344566666666666655321 22233344788999999987667899999999999998654432222
Q ss_pred hHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCCh-----hhHHHHHHHHHHHH
Q 000051 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2612)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~ia 1486 (2612)
.+. ..+|.++..+.++++.||+.|..++..++..-+.. .+ ...++.++..+...+. ...+.++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 232 47999999999999999999999999997643322 11 3467888888775443 34667788888888
Q ss_pred hhC-chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000051 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2612)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2612)
... +..-......++|.|.+++.+.+++|+..|+++|..++..- ++... .+.
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~--~~~~~---------------------~i~---- 271 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIE---------------------MVV---- 271 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHH---------------------HHH----
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch--hhhHH---------------------HHH----
Confidence 653 22222334678899999999999999999999999987532 11000 000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh-hHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2612)
-..++|.|...+.+.+..++..++.++++++.. +...... .-...++.+..++.++++.+|..|+.+|+
T Consensus 272 --------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 272 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred --------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 012456666777777888999999999998753 2111111 11246677778888999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhH
Q 000051 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2612)
Q Consensus 1645 ~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~ 1715 (2612)
.++....+. .-..++|.++..+.+.+ ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 997632221 12367888888887654 56888999999998876554432 346788999999999999999
Q ss_pred HHHHHHHhhhh
Q 000051 1716 YLTLFKYLPRS 1726 (2612)
Q Consensus 1716 ~~~~l~~L~~~ 1726 (2612)
++.++..+...
T Consensus 421 ~L~aL~nil~~ 431 (510)
T 3ul1_B 421 ILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-09 Score=148.73 Aligned_cols=497 Identities=13% Similarity=0.078 Sum_probs=300.7
Q ss_pred hchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 000051 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1916 ~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~ 1995 (2612)
.|.++ +...+.+.+.+.+++...|..+..++..+... . .+.+--+++.+.+-+.|+++.+|..|..+++.+..
T Consensus 68 ~G~d~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~----~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~- 140 (621)
T 2vgl_A 68 LGHDI-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS-N----SELIRLINNAIKNDLASRNPTFMGLALHCIANVGS- 140 (621)
T ss_dssp HSCCC-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC-C----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCC-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC-C----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-
Confidence 35543 23444455577888888888887777765322 1 12335567778888888888888888877766521
Q ss_pred hChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhH
Q 000051 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTI 2075 (2612)
Q Consensus 1996 ~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~i 2075 (2612)
+ ...+.+
T Consensus 141 --~-----------------------------------------------------------------------e~~~~l 147 (621)
T 2vgl_A 141 --R-----------------------------------------------------------------------EMAEAF 147 (621)
T ss_dssp --H-----------------------------------------------------------------------HHHHHH
T ss_pred --H-----------------------------------------------------------------------HHHHHH
Confidence 1 112334
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHhhhhcccccHH--HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH
Q 000051 2076 LPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2612)
Q Consensus 2076 l~~Ll~~L--~~~~~~vr~~a~~al~~l~~~~~~~~l~--~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~ 2151 (2612)
+|.+.+.+ .+.++.||..|+-|+..+.... ++.+. .+++.+.+.+.|.|+.++.+|+.++..++...+..+.++.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~ 226 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV 226 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 45566667 7889999999999999888743 33333 6777788888899999999999999999988777777778
Q ss_pred HHHHHHHHHHhcCC-------------ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccc
Q 000051 2152 PNMISTLIVLLSDS-------------DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2612)
Q Consensus 2152 ~~il~~L~~ll~d~-------------d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2612)
+.+++.|..++.+. ++-.+......+..+......+....+...+.+.+....+.
T Consensus 227 ~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~------------ 294 (621)
T 2vgl_A 227 SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP------------ 294 (621)
T ss_dssp HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC------------
Confidence 87777777665432 33344444444333321110011111111111111110000
Q ss_pred cCCCCCcCchhhHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHH
Q 000051 2219 PGFCLPKALQPLLPIFLQGLISGS--AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTL 2296 (2612)
Q Consensus 2219 ~g~~~p~~l~~ilp~l~~~L~~~~--~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L 2296 (2612)
|+.- ++.+.+ ..+-..++.++-.+ .+ ..++......+|.+.+.+. +.++|..++.+|
T Consensus 295 -----~ks~---------~l~~~n~~~aVl~ea~~~i~~l---~~---~~~~~~~~~~~L~~~L~~~-~~niry~aL~~l 353 (621)
T 2vgl_A 295 -----PKSK---------KVQHSNAKNAVLFEAISLIIHH---DS---EPNLLVRACNQLGQFLQHR-ETNLRYLALESM 353 (621)
T ss_dssp -----CSCS---------SHHHHHHHHHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHHHSSCS-CHHHHHHHHHHH
T ss_pred -----cccc---------cccccchHHHHHHHHHHHHHhc---CC---cHHHHHHHHHHHHHHhcCC-CcchHHHHHHHH
Confidence 0000 001111 12333333333332 22 2344556677788888754 789999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lpqL~~~~~k~L~-d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~ 2375 (2612)
..++...+. .+++......|+.++. |++..+|..|...|..++. ..+++.++.+|...+...|.+.|..++.+++.
T Consensus 354 ~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~ 430 (621)
T 2vgl_A 354 CTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSYLETADYSIREEIVLKVAI 430 (621)
T ss_dssp HHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999865431 1234556778889999 9999999999999988854 35688999999999988899999999999999
Q ss_pred HHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 000051 2376 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFAT 2455 (2612)
Q Consensus 2376 vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~ 2455 (2612)
+..+..... .-+.+.+++++...- +.+...+...+..+....|+-. ...+..+...+.++.. +...+.....
T Consensus 431 la~k~~~~~-~~~v~~Ll~ll~~~~----~~v~~ev~~~l~~ii~~~~~~~-~~~~~~l~~~l~~~~~--~~~li~~~~w 502 (621)
T 2vgl_A 431 LAEKYAVDY-TWYVDTILNLIRIAG----DYVSEEVWYRVIQIVINRDDVQ-GYAAKTVFEALQAPAC--HENLVKVGGY 502 (621)
T ss_dssp HHHHHCSST-HHHHHHHHHHHHHHG----GGSCSHHHHHHHHHHGGGCSCH-HHHHHHHHHHHTSSSC--CHHHHHHHHH
T ss_pred HHHhcCCcH-HHHHHHHHHHHHhhc----ccchHHHHHHHHHHHhCChhHH-HHHHHHHHHHHcCccc--hHHHHHHHHH
Confidence 887765443 445555555554322 1222223344444544444321 1122333333333332 2223322223
Q ss_pred HHhhCCccccCCch--hHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHh-hcC--CCCH
Q 000051 2456 FLRHNPSAISMSPL--FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVS-ALH--DDSS 2530 (2612)
Q Consensus 2456 ~l~~~p~~~~~~~~--~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~-~l~--~~~~ 2530 (2612)
++.+....+...+. ..+++..+.+.....++.+|...+.|+.++..... ...+.+..++. ... |.+.
T Consensus 503 ilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p--------~~~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 503 ILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP--------EVKATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp HHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG--------GGHHHHHHHHSSHHHHSCSSH
T ss_pred HhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh--------HHHHHHHHHHHHHhcCCCCCH
Confidence 44333333322111 12456677777777889999999999999876542 13344555554 233 8999
Q ss_pred HHHHHHHHHHHHHHh
Q 000051 2531 EVRRRALSALKSVAK 2545 (2612)
Q Consensus 2531 ~vr~~a~~~l~~~a~ 2545 (2612)
|||..|..-.+-+..
T Consensus 575 evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 575 ELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999998877654
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-10 Score=151.21 Aligned_cols=348 Identities=14% Similarity=0.126 Sum_probs=240.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000051 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~ 1416 (2612)
+.+++.+. +++...+..|...+..+...-. ...+...++++.|.+.+....++..+..|+.++..++.+-......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444443 3345566666666665553221 2223344788889998876667899999999999998654432222
Q ss_pred hHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCCh-----hhHHHHHHHHHHHH
Q 000051 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2612)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~ia 1486 (2612)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. .+ ...+|.++..|...+. ...+.++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 58999999999999999999999999997643222 11 3467888888876543 34667788888887
Q ss_pred hhC-chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000051 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2612)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2612)
... +..-......++|.|..++.+.+++|+..|+++|..++..-. +.. . .+.
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---~------------------~v~---- 290 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---E------------------MVV---- 290 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---H------------------HHH----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---H------------------HHH----
Confidence 653 222223346788999999999999999999999999885321 100 0 000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcch-hhHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~-~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2612)
-..++|.|...+.+.+..++..++.++++++.. +..... -.-...++.|..++.++++.+|..|+.+|+
T Consensus 291 --------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 291 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred --------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 012456666777777888999999999998753 211111 112346788888999999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhH
Q 000051 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2612)
Q Consensus 1645 ~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~ 1715 (2612)
.++...... .-..++|.++..+.+.. ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++..
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~ 439 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHH
Confidence 998642211 12357888888887664 56888999999998876554432 346888999999999999999
Q ss_pred HHHHHHHhhhh
Q 000051 1716 YLTLFKYLPRS 1726 (2612)
Q Consensus 1716 ~~~~l~~L~~~ 1726 (2612)
++.++..+...
T Consensus 440 ~L~aL~nil~~ 450 (529)
T 3tpo_A 440 ILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-07 Score=128.64 Aligned_cols=384 Identities=11% Similarity=0.113 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHhc--hhhhhhHHH
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSS-----SERRQVAGRALGELVRKLG--ERVLPSIIP 1926 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~-~l~~~l~~ll~~L~~~L~~~~-----~~~R~~A~~aL~~lv~~~~--~~~l~~llp 1926 (2612)
..+|..+++++=++++++..... .-.+++|.+++.|+.....+. ..++.....++|+..+.+. ..++..++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 45799999999999999765543 345799999999998776442 2233334456776655543 347888888
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-------HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-------LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~-------l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
.+.+++.++++.++..||.++..+...++..- ..+|+..++..+.....+-.++-...-.+|++.+....+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 88889999999999999999999988876542 24578888888888777766666666677788887776653
Q ss_pred h-hhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCC-cc--hhHHHHHHHHHHHhCCChhhhHhhH
Q 000051 2000 A-IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LS--AFNAHALGALAEVAGPGLNFHLGTI 2075 (2612)
Q Consensus 2000 ~-~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~-~~--~~~~~al~~La~~~g~~l~~~l~~i 2075 (2612)
. ...++..++..+ ...+.+++...... + ..+.++. +. ....++..+++...|..+.+++..+
T Consensus 650 ~~~~~~i~~Lm~~~---------~~~w~~l~~~~~~~--~---~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i 715 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLP---------NQVWDSIIQQATKN--V---DILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 715 (1073)
T ss_dssp HHHHHHHHHHTHHH---------HHHHHHHHHHHHHC--G---GGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HHHHHHHHHHhhcC--c---hhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHH
Confidence 2 222222222111 11222222110000 0 0001100 00 0122345566677899999999988
Q ss_pred HHHHHHhcCC-----------------CCHH------HHHHHHHHHHHhhhhccc------ccHHHHHHHHHhhcCCCCh
Q 000051 2076 LPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQA 2126 (2612)
Q Consensus 2076 l~~Ll~~L~~-----------------~~~~------vr~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~~~~~ 2126 (2612)
++.+++..+. ..+. +|...+..+...+...++ .-+++++..++.-.....|
T Consensus 716 ~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p 795 (1073)
T 3gjx_A 716 YLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVP 795 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 8877754211 1122 333333444444433221 1244555555554444455
Q ss_pred hHHH-HHHHHHHHHHHhcccchhccHHHHHHHHHH----Hhc---CCChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2127 SIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2127 ~vR~-~A~~~L~~l~~~~~~~~~~~~~~il~~L~~----ll~---d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
..|. ..+.++..++...+..+.++++.++..++. +++ +..++.|..-..-+.++..++....
T Consensus 796 ~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l---------- 865 (1073)
T 3gjx_A 796 AAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF---------- 865 (1073)
T ss_dssp GGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGT----------
T ss_pred ccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHH----------
Confidence 5555 456666777888888888888888887764 344 3346777777776666665543221
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCC-cCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh------hhhhhchhh
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE------QSLKEFVIP 2271 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p-~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~------~~l~p~v~~ 2271 (2612)
+++| .....++..++-++.+...++-..+...+-+++..... .-++.|.-.
T Consensus 866 ----------------------~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~ 923 (1073)
T 3gjx_A 866 ----------------------LAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCD 923 (1073)
T ss_dssp ----------------------TTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------HcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 1122 22344666667777778888877777777777765331 113344445
Q ss_pred hhHHHHHHhcCCC
Q 000051 2272 ITGPLIRIIGDRF 2284 (2612)
Q Consensus 2272 i~~pLi~~l~~~~ 2284 (2612)
+..-.+.++.|..
T Consensus 924 ~~~~i~~v~td~~ 936 (1073)
T 3gjx_A 924 ILQHIFSVVTDTS 936 (1073)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHhCch
Confidence 5555556666653
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-10 Score=139.99 Aligned_cols=206 Identities=15% Similarity=0.201 Sum_probs=169.2
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHH-HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc-
Q 000051 1776 LLPAVEDGIFNDNWRIRQSSVELLGD-LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR- 1853 (2612)
Q Consensus 1776 llp~L~~~l~d~~w~vR~~a~~ll~~-ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~- 1853 (2612)
+=+.+.+.+.+.+|+.|.++++.++. ++..++... ..+.+ +.+++..+...+
T Consensus 17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~--------~~~~~------------------~~~~~~~L~~~l~ 70 (249)
T 2qk1_A 17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLK--------STSQN------------------YSNLLGIYGHIIQ 70 (249)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBC--------CTTCC------------------CHHHHHHHHHHHH
T ss_pred CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccc--------cCccc------------------HHHHHHHHHHHhc
Confidence 33455667789999999999999888 764322110 00111 123445555566
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCh-hhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhhHHHH
Q 000051 1854 SDVSLSVRQAALHVWKTIVANTP-KTLK-EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPI 1927 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~-~~l~-~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~ 1927 (2612)
.|.+..||..|+.+++.++.+.+ ..|. +|...++|.++..+++....+|..+..++..++..+++. .++.+++.
T Consensus 71 ~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~ 150 (249)
T 2qk1_A 71 KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD 150 (249)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHH
Confidence 79999999999999999998877 7788 999999999999999999999999999999999987542 26688898
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhCh--hhHHHhH-hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhh
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGK--SQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~--~~l~~~l-~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~i 2004 (2612)
+...+++++|.+|.+++.+|+.++...+. ..+.+++ +.++|.+.+.+.|++++||++|..+++.++..+|...+.++
T Consensus 151 l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~ 230 (249)
T 2qk1_A 151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKT 230 (249)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999999999999999887664 5677899 99999999999999999999999999999999998777766
Q ss_pred HHH
Q 000051 2005 VPT 2007 (2612)
Q Consensus 2005 lp~ 2007 (2612)
++.
T Consensus 231 l~~ 233 (249)
T 2qk1_A 231 LEH 233 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-06 Score=118.24 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=133.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
+.+..+|+.++.+||-+.-... ..+..+++.+....++-+|..+..+++.-....|. ...++..+-
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-----~~aIq~LL~ 584 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-----NSAVKRLLH 584 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-----HHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHH
Confidence 4467889999999998753332 22344566666556888999998888855444443 122334444
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH
Q 000051 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398 (2612)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l-~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~ 2398 (2612)
.+.+|+++.||..|+.+||.+..-.+ ..++.++..+ ++.++.+|..+..||+.+.. |... ..+++.|..
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~g~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~a--Gn~~-----~~aid~L~~ 654 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLLRDY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--GKGL-----QSAIDVLDP 654 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTSSSC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--SSCC-----HHHHHHHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--CCCc-----HHHHHHHHH
Confidence 56678899999999999998743333 3467777765 45789999999999987753 3221 567778888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhCChh---HHHHHHHHHHhhcCC--CCchhhHHHHHHHHHH
Q 000051 2399 LVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELLNLASS--PSWAARHGSVLVFATF 2456 (2612)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll~~~~~--~~~~~~~~~~~~l~~~ 2456 (2612)
+..|.++.||..|+..||.++.-..+. .+..+++.+.....+ .+...+.++..+.+-+
T Consensus 655 L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 889999999999999999998766655 577777776654432 3444555555555433
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=133.50 Aligned_cols=241 Identities=17% Similarity=0.123 Sum_probs=159.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
.++.|.+.+.++ ++.+|..|+.+++.+. + ...++.++..+.|+++.||..|..++..+.. ....+..
T Consensus 24 ~i~~L~~~L~~~-~~~vr~~A~~~L~~~~---~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDDH-NSLKRISSARVLQLRG---G-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTCS-SHHHHHHHHHHHHHHC---C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHcC-CHHHHHHHHHHHHccC---C-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 345566677766 7888888888777654 1 3567778888888888999888888876632 1223444
Q ss_pred HHHHHHh-hhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1459 VLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1459 ilp~Ll~-~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
+++.+.+ .+.++++.+|..++.+|+.+....+. ..+.+++.+...++|+++.||..|+.+|+.++. ..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~ 159 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KA 159 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HH
Confidence 5555553 35677888888888888887754432 224567778888888888888888888887654 23
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
.+|.|.+.+.|++..+| .++..+.... . .-+.++|.+...+.|.++.+|..++.+++.+..
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININK---Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhc---c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence 56777777777777776 4555554311 0 012456777777777778888888877776542
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCC
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~ 1671 (2612)
+..++.+...+.|++ ||..|+.+++.+.. +..+|.|.+.+.++.+
T Consensus 222 -~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 222 -KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp -GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSC
T ss_pred -HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCC
Confidence 125566666666643 77777777776532 3566777666655443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=150.23 Aligned_cols=285 Identities=16% Similarity=0.274 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHhChhh-H-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc--chhhhHHhHHHHHHhhcCCC
Q 000051 1674 ERSGAAQGLSEVLAALGTVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2612)
Q Consensus 1674 ~R~~aa~~L~~i~~~~g~~~-l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~--~f~p~l~~iip~ll~~L~d~ 1749 (2612)
.+..++..++.++..-+... . ..++..+.+.+.+.... ++++.++..++..+|. .++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45667777777765432221 1 35666777777666444 9999999999988864 78999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCC-chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHH
Q 000051 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2612)
Q Consensus 1750 ~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~-~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~ 1828 (2612)
...||.+|..+...++..+++.++..++|.+...+.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999999655 69999999999999864321
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000051 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2612)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~ 1907 (2612)
..+. ..+.++++.+-.+..|...+|..+|..++..++.... ..+.+++ |.|++++.+++.. -.
T Consensus 167 --~~~~-----~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~----~~~~~~~~~p~~~-----~~ 230 (986)
T 2iw3_A 167 --DQVA-----LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI----PSLIQCIADPTEV-----PE 230 (986)
T ss_dssp --HHHH-----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGH----HHHHHHHHCTTHH-----HH
T ss_pred --HHHH-----HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhH----HHHHHHhcChhhh-----HH
Confidence 1122 2446788888889999999999999999999887443 3444554 4566667777542 22
Q ss_pred HHHHH-----HHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC-hhhHHHhHhHHHHHHHHHhc-CCcHH
Q 000051 1908 ALGEL-----VRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALC-DSILE 1980 (2612)
Q Consensus 1908 aL~~l-----v~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-~~~l~~~l~~ll~~l~~~L~-D~d~~ 1980 (2612)
|+..+ +..+....+.-+.|+|.++|+++...+++.++..+..++.-.. +....+|++.++|.+.+... -.+|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 33222 2223445688999999999999998888888888888766553 56678999999999998775 46999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000051 1981 VRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1981 Vr~~A~~al~~l~~~~g 1997 (2612)
+|+.|.+|+..+.+..+
T Consensus 311 ~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999977644
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-09 Score=130.69 Aligned_cols=250 Identities=14% Similarity=0.099 Sum_probs=185.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
.++.++..+.|+++.||..|..++..+. -...+|.++..+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 4678888999999999999999988773 2457888899999999999999999998875321 123456
Q ss_pred HHHHh-hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000051 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1501 vp~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
++.+. .+++|+++.||..|+++|+.++.... ......+|.|...+.|++..+| .++..+... .. ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~------~~---~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVI------ND---KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc------CC---HHHH
Confidence 66655 35789999999999999999985431 2235688999999999999888 567776642 11 2357
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~l 1658 (2612)
|.|...+.++++.+|..++..++.+... . +..++.+...+.|+++.||..|+.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYD--N--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCC--C--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccC--c--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 8888889999999999999999887421 1 347788888999999999999999998864 2456
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-CChhhHhHHHHH
Q 000051 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTL 1719 (2612)
Q Consensus 1659 l~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~ 1719 (2612)
+|.+...+.+++ +|..++.+++.+ |. +..+|.+.+.+.+ .++.++..++..
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i----~~---~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhc----Cc---hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 777777776643 677777777765 33 3566777776654 455555444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.11 E-value=5.5e-06 Score=112.56 Aligned_cols=261 Identities=14% Similarity=0.146 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-hhhhhHHHHHhhhcCCCC
Q 000051 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDPS 1936 (2612)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-~~l~~llp~L~~~L~d~~ 1936 (2612)
..+|..|+-.+|-+..++.+ +.+.+.|...+.+.+...|..|+.+||.+.-..|. .+...++..+. .+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSC
T ss_pred HHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCc
Confidence 57888888888887655543 12344445555666777888899999877544443 24555555544 3556
Q ss_pred hhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCC
Q 000051 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2612)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L-~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2612)
..+|..++.+||.+. .+.. ..++.+.+.+ .+.++.+|..++-+++--+...|.. ..+..|+..+.++
T Consensus 522 e~vrR~aalgLGll~--~g~~-------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d 589 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ-------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG-------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh--CCCh-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccC
Confidence 789999999999762 2221 1223333333 3789999999888776544333331 2233333322211
Q ss_pred CcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHh-CCChhhhHhhHHHHHHHhc-CCCCHHHHHH
Q 000051 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSL 2093 (2612)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~-g~~l~~~l~~il~~Ll~~L-~~~~~~vr~~ 2093 (2612)
.. ...+..|+-+|+-+. |.. ..++.+++.+ .+.++.+|..
T Consensus 590 ~~--------------------------------d~VRraAViaLGlI~~g~~------e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 590 SN--------------------------------DDVRRAAVIALGFVLLRDY------TTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp SC--------------------------------HHHHHHHHHHHHHHTSSSC------SSHHHHTTTGGGCSCHHHHHH
T ss_pred Cc--------------------------------HHHHHHHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHHHH
Confidence 11 011223444555442 331 3455566654 5678999999
Q ss_pred HHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcC--CChhHHH
Q 000051 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVA 2171 (2612)
Q Consensus 2094 a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d--~d~~V~~ 2171 (2612)
+..+++.+....+ ...++..|.....|.+..||++|+.++|.+.........+.+..+++.|.....| .|..++-
T Consensus 632 AalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 632 TAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHH
Confidence 9999998754322 3566777777788999999999999999998887777778899999999998876 4566666
Q ss_pred HHHHHHHHH
Q 000051 2172 AAWEALSRV 2180 (2612)
Q Consensus 2172 ~a~~aL~~l 2180 (2612)
.+.-|.+-+
T Consensus 709 ga~iAqGll 717 (963)
T 4ady_A 709 GACVAQGIM 717 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-07 Score=139.41 Aligned_cols=538 Identities=13% Similarity=0.105 Sum_probs=295.3
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCC
Q 000051 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2612)
+++.++|+.+++| |+.+|.+|++.|++.... |........+. ...+.+..+|.+|. ..|...+.
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3588889999998 778899999999876311 11111111111 12344566666654 35654332
Q ss_pred CCCCCh-HhHHHhhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000051 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2612)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~-------~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2612)
+-.+.+ ..+++.+.+ ....+|++++++++.++. .||+.|++++..+.+.... +...+.++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHH
Confidence 222235 566766542 468999999999999875 6888888888888876431 12457788
Q ss_pred HHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccC----------C
Q 000051 1198 ALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK----------A 1267 (2612)
Q Consensus 1198 ~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~----------~ 1267 (2612)
..+|..+++.+... .+... .|..-+. ..+. +.++.+++.+...+... .
T Consensus 154 L~iL~~L~Eev~~~--------------~~~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 154 MFILLRLAEDVVTF--------------QTLPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp HHHHHHHHHHHHTS--------------CCSCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHccc--------------cchHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88888887632110 11111 1211111 1111 11333444433333210 0
Q ss_pred CC---hHHhhhHHhHHHHHHHHHhhhhccC--CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcc--h------
Q 000051 1268 SD---EEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E------ 1334 (2612)
Q Consensus 1268 ~~---~~~~d~vr~~~i~~l~~La~~l~~~--~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~------ 1334 (2612)
.+ .+....++..+...+.....+.+.. ...-..+++.+...+.+ +++|.++.+||..++..... +
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~ 289 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMV 289 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGG
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHH
Confidence 00 0112233333333333222221100 00002366667766654 57899999999988864321 1
Q ss_pred -h-HHHHHHHHHHhh--c-----CCChHHHHHHHHHHHHHHhhh-----------CcchhhhhcHHHHHHHHHhCCCCHH
Q 000051 1335 -A-PTLVSRLLDQLM--K-----SDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLADRNSAK 1394 (2612)
Q Consensus 1335 -~-~~li~~ll~~L~--~-----~~~~~~R~~Aa~~L~~l~~~l-----------g~~~l~~~~i~~~L~~~i~~~~~~~ 1394 (2612)
. ...+..+++.+. + .+++..++.-+..+..+...+ ....+ ..+++.+..+..+. +..
T Consensus 290 ~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~~-~~~ 366 (1204)
T 3a6p_A 290 LFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTHP-SQF 366 (1204)
T ss_dssp GGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTSS-CHH
T ss_pred HHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhCc-cHH
Confidence 0 122334455432 1 112344444444444333111 11112 25778888888776 555
Q ss_pred HHHHHHHHHHHHHHHh----cccchhhHHHHHHHH---HHHcCCCC------------------------HHHHHHHHHH
Q 000051 1395 RREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVREAAECA 1443 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~----~~~~~~~v~~ilp~l---l~~l~D~~------------------------~~VR~aa~~a 1443 (2612)
+-..++.....+.+.. ...+.+++.++++.+ +..+.-+. ...|+.....
T Consensus 367 vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~ 446 (1204)
T 3a6p_A 367 LRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEV 446 (1204)
T ss_dssp HHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHH
Confidence 5545554444444332 123567788888887 44432111 1346667777
Q ss_pred HHHHHHhhcHHhHHhHHHHHHhhhcC-------------------------CChhhHHHHHHHHHHHHhhCchhh-hhhh
Q 000051 1444 ARAMMSQLSAQGVKLVLPSLLKGLED-------------------------KAWRTKQSSVQLLGAMAYCAPQQL-SQCL 1497 (2612)
Q Consensus 1444 l~~i~~~l~~~~v~~ilp~Ll~~L~~-------------------------~~w~~r~~a~~~L~~ia~~~p~~l-~~~L 1497 (2612)
++.++...+..++..+.+.+.+.+.+ ..|....+....++++++...+.. ..++
T Consensus 447 l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l 526 (1204)
T 3a6p_A 447 MRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEI 526 (1204)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 88887777777776666666443321 235555666666676665442211 1233
Q ss_pred c-hhHHHHhhhh---cCCCHHHHHHHHHHHHHHHhhcCC-h-hHhhHHHHHHhhcCCCCh-hHHHHHHHHHhccccccCC
Q 000051 1498 P-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFVNTVD 1570 (2612)
Q Consensus 1498 ~-~ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ivp~Ll~~l~d~~~-~~r~al~~L~~~~~~~~i~ 1570 (2612)
+ .++|.+++.+ +..+|.+|..++.+++.+...+.. | .+..+++.++..+.++.. ..+ .
T Consensus 527 ~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~---------------~ 591 (1204)
T 3a6p_A 527 PVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK---------------A 591 (1204)
T ss_dssp CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT---------------S
T ss_pred cHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc---------------c
Confidence 3 2455555543 446899999999999999887652 2 345555555554433100 000 0
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCC---HHHHHHHHHHHHHHH
Q 000051 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1571 ~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~---~~VR~~A~~aL~~L~ 1647 (2612)
. -.+.+.++|..|+.++..++..+ ++.+.||++.+...+..++.... ..-+..-..+++.++
T Consensus 592 ~-------------~~~~~k~vr~~a~~al~~L~~~~--~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia 656 (1204)
T 3a6p_A 592 P-------------RTRAVRNVRRHACSSIIKMCRDY--PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS 656 (1204)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH
T ss_pred c-------------ccHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence 0 00012478999999999999864 35789999999999998887443 666777788888886
Q ss_pred hhhCCC-----CchhhHHHHHHHhcc
Q 000051 1648 RGMGEE-----NFPDLVSWLLDALKS 1668 (2612)
Q Consensus 1648 ~~~g~~-----~~~~ll~~L~~~L~~ 1668 (2612)
..+++. ++..+++.+.+.+.+
T Consensus 657 ~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 657 NQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 655543 356666666666654
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.9e-10 Score=152.75 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=119.3
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
..++|++.. |++++++.|..+|.+|+.++.......+..+...+.+.+..++.|++.+||.+|+.+|..++...|.+..
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 456776654 8899999999999999999754322222222234555667789999999999999999999888777655
Q ss_pred hh-----hHHHHHHhccCCCcchHHHHHHHHHhh------hcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhh
Q 000051 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILS------VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070 (2612)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~al~~L~~il~------~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~ 2070 (2612)
+. ++|.|+..|+.... .+..... ......++.+ ......++.+|++.....+..
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~lL~~L~e~s~~~~~~ 177 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLE------TLTTSEPPFSKLLKAQQRLVWDI---------TGSLLVLIGLLALARDEIHEA 177 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHH------HHHCBTTBGGGSCHHHHHHHHHH---------HHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHH------HHhhhccccccccHHHHHHHHHH---------HHHHHHHHHHHHhCCHHHHHH
Confidence 44 67777766643111 0000000 0000000000 001223445555533322222
Q ss_pred hH-hhHHHHHHHhcC---CCCHHHHHHHHHHHHHhhhhcc-------cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000051 2071 HL-GTILPALLSAMG---DDDMDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2612)
Q Consensus 2071 ~l-~~il~~Ll~~L~---~~~~~vr~~a~~al~~l~~~~~-------~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l 2139 (2612)
.. ...+|.++..+. ....+++..+..|+..+..... .++...++..++...++.++. |..++..+.++
T Consensus 178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni 256 (684)
T 4gmo_A 178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNV 256 (684)
T ss_dssp HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhH
Confidence 11 245566666552 2346789999999888765321 122233455555555555444 55555555555
Q ss_pred H-HhcccchhccHH
Q 000051 2140 Y-KNSKLYLVDEAP 2152 (2612)
Q Consensus 2140 ~-~~~~~~~~~~~~ 2152 (2612)
+ .....+++.+..
T Consensus 257 ~~~~~~~d~s~~~~ 270 (684)
T 4gmo_A 257 FTSLQWMDHSPGKD 270 (684)
T ss_dssp HHHHTCBTTBCCGG
T ss_pred hhhhhhhhcchhhH
Confidence 4 444445555443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=118.65 Aligned_cols=189 Identities=19% Similarity=0.211 Sum_probs=154.1
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l 1493 (2612)
+.++-....+.++..+.|+++.+|..|..++..+.. ...+|.+++.+.++++.+|..++.+|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 445556788999999999999999999999887632 3567888899999999999999999988742
Q ss_pred hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChh
Q 000051 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2612)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~ 1572 (2612)
+..++.+...++|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..+.... .
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT------C-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------C-
Confidence 3567888899999999999999999998864 2467888888899998888 5666665421 1
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
...++.|...+.|.++.+|..++.+++.+.. +..++.+..++.|+++.||..|..+|+.+-
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2467788889999999999999999998732 347778888889999999999999998753
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=118.43 Aligned_cols=186 Identities=19% Similarity=0.215 Sum_probs=134.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhch
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ 1499 (2612)
..++.++..+.|+++.+|..+..++..+.. ...+|.|++.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 567888888999999999999888877622 3567888888888899999999999988742 45
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
.++.+.+.++|+++.||..|+.+|+.++. ...++.|.+.+.|++..+| .++..+.... . ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~---~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D---ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------C---GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------C---HHHH
Confidence 67778888999999999999999988864 2456777777777777776 4555554311 1 2345
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~ 1650 (2612)
+.|.+.++|.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 667777777777788777777776632 235666677777777788888877777765543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=9e-06 Score=108.47 Aligned_cols=554 Identities=13% Similarity=0.100 Sum_probs=296.5
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-- 1455 (2612)
.++..++..+....+.+ ..--+-++-.+...++-.|.. +.-++..+ ++.-..++||..+.-+........+...
T Consensus 132 ~ll~~~~~~~~~~~~~~-~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDTH-VTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcc-hhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 56666666666443443 334455555566666644444 32233222 2355677899888777666655544332
Q ss_pred -HHhHHHHHH-hhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh--chhHHHHhhhh-cCCCHHHHHHHHHHHHHHHhhc
Q 000051 1456 -VKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1456 -v~~ilp~Ll-~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L--~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~ 1530 (2612)
+..++..++ +.=.+..-..-..++.++..+.--.|+....-+ ....+.+.+.+ ......+..++.+.|...+..-
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 233333222 100111122233344444444444444332221 34455555555 3345566666666665554321
Q ss_pred CCh--hHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc
Q 000051 1531 KNP--EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2612)
Q Consensus 1531 ~~~--~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~ 1607 (2612)
... -.+..++.|...+.+ +.+| .|+-.|.+..........+...+.+.+.+.+.+...+.+..|.+.|..+.-.
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~- 364 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK- 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-
Confidence 111 126677888877765 3455 3444444432222223345567888999999887766688888888776431
Q ss_pred CCCCcchhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHh-ccCCCHHHHHHHHH
Q 000051 1608 TEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDAL-KSDNSNVERSGAAQ 1680 (2612)
Q Consensus 1608 ~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~~-----~~~~ll~~L~~~L-~~~~~~~~R~~aa~ 1680 (2612)
.+.++....-+.+++.|.+++.+ .+..+-..+...|+.+....... .+..+.++.-... ..+...... ....
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~~ 443 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAKE 443 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cchH
Confidence 11112122224567778888874 56678888888888887754421 1222222111100 000000000 0001
Q ss_pred HHHH-HHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChh---HH
Q 000051 1681 GLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENES---VR 1754 (2612)
Q Consensus 1681 ~L~~-i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~---VR 1754 (2612)
.+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..-. ....+ ...+++++..+....+. +|
T Consensus 444 ~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~--~R~~lvqqGal~~LL~lL~s~~~~~~~~k 518 (778)
T 3opb_A 444 DILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKN--FIPQLAQQGAVKIILEYLANKQDIGEPIR 518 (778)
T ss_dssp HHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG--GHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred HHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence 1111 1111111 3478888898999999999999999999975422 22222 24788889888876543 78
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHH
Q 000051 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2612)
Q Consensus 1755 ~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~ 1834 (2612)
..|..|+..+.....+. +. +... .. .+ .++.++.-+.... +.+. ..
T Consensus 519 ~~AA~ALArLlis~np~--------~~---f~~~-~~-~~---aI~pLv~LL~~~~-------~~~~-~~---------- 564 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPG--------LI---FKKY-SA-LN---AIPFLFELLPRST-------PVDD-NP---------- 564 (778)
T ss_dssp HHHHHHHHHHHHTSCHH--------HH---SSSS-CS-TT---HHHHHHHTSCCSS-------SCSS-CC----------
T ss_pred HHHHHHHHHHHhcCCHH--------HH---cCCC-cc-cc---chHHHHHHcCCCC-------Cccc-cc----------
Confidence 88888888766332211 10 0000 00 01 2222221111000 0000 00
Q ss_pred HHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh---hhH-HHHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 000051 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGRA 1908 (2612)
Q Consensus 1835 ~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~---~~l-~~~l~--~ll~~L~~~L~~~~~~~R~~A~~a 1908 (2612)
++ ........-+..|+.++..++.... +.. ..++. ..++.+...+.+.+..+|..|+++
T Consensus 565 --------------l~-~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~el 629 (778)
T 3opb_A 565 --------------LH-NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629 (778)
T ss_dssp ------------------CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred --------------cc-ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 00 0001112234567777777777541 222 33454 478889999999999999999999
Q ss_pred HHHHHHHhch---hhh----hh---HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHHhcC
Q 000051 1909 LGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD 1976 (2612)
Q Consensus 1909 L~~lv~~~~~---~~l----~~---llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~D 1976 (2612)
++.++..... .+. +. =++.|...++..+.++|.+++.+|+.+.... +......+ ...++.+...+.+
T Consensus 630 I~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhc
Confidence 9999864321 221 11 2678888888999999999999998864322 22112222 3567777778877
Q ss_pred --CcHHHHHHHHHHHHHHHH
Q 000051 1977 --SILEVRESAGLAFSTLFK 1994 (2612)
Q Consensus 1977 --~d~~Vr~~A~~al~~l~~ 1994 (2612)
+++++|..++.++..|..
T Consensus 709 ~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 709 QIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999876
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-06 Score=110.36 Aligned_cols=475 Identities=13% Similarity=0.101 Sum_probs=285.6
Q ss_pred HHHhcCCCCCCChHhHHHhhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000051 1120 IWDRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2612)
Q Consensus 1120 ~w~~~~~~~~~~~~~Ll~~l~--~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2612)
+.....+.+++ +.-|++++. .....+|..+--+++...+.+++.+.+.+....+...-.... +..-.--..+
T Consensus 159 l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~-----~~~~~~~~~~ 232 (778)
T 3opb_A 159 LLNKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEI-----DVGNDPLSII 232 (778)
T ss_dssp HHHHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCSSCHHHHH
T ss_pred HHHHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhcc-----CCCCccHHHH
Confidence 34445566654 666777665 578899999999998888888877776666665533211100 0001122333
Q ss_pred HHHHHHhhhh--------hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchh----hhhHHHHHHHhcc
Q 000051 1198 ALALHSAADV--------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNV----SLLFPIFENYLNK 1265 (2612)
Q Consensus 1198 ~~al~~~~~~--------~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~----~~Llp~~~~~l~~ 1265 (2612)
..++..+.+. |-.+.. ...+.......++..+..++++.+...-. ++... +..+|.+++.+..
T Consensus 233 ~~~l~~lfPi~p~~~s~lfl~e~~---~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 233 VKTLSELYPSLTTLCSEIFLTKGL---SKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHHTTTTHHHHHHHHSTTTH---HHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCHHHHHHHHccccH---HHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc
Confidence 3344444332 222222 22222222234566666666666553211 12222 3334444444432
Q ss_pred CCCChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhh--hcch---hHHHHH
Q 000051 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--MQDE---APTLVS 1340 (2612)
Q Consensus 1266 ~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~--~~~~---~~~li~ 1340 (2612)
+.+|.-+...+..+...-...+..+..+.+.+.+.|.++..+.|..+.+.|..+-.. +++. ....+.
T Consensus 308 --------~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~ 379 (778)
T 3opb_A 308 --------EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTE 379 (778)
T ss_dssp --------GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHH
Confidence 345655555555555433333456778999999999997766677778877655321 1121 144566
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhCc----------------------------------------chhhhhcHH
Q 000051 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGI----------------------------------------SSLKKYGIA 1380 (2612)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~----------------------------------------~~l~~~~i~ 1380 (2612)
.+++.+....+...-.++...|+.+...... ..+...+++
T Consensus 380 ~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvI 459 (778)
T 3opb_A 380 ILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELI 459 (778)
T ss_dssp HHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCH
Confidence 7777766433445566666666666553221 001112567
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhhcHHh
Q 000051 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQG 1455 (2612)
Q Consensus 1381 ~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~~---VR~aa~~al~~i~~~l~~~~ 1455 (2612)
+.|...+.+. ++..|+.|..++..++.. . .....+. ..++.++..+.+.... +|..|..++..+.-...+..
T Consensus 460 p~Lv~Ll~S~-s~~~re~A~~aL~nLS~d-~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 460 SFLKREMHNL-SPNCKQQVVRIIYNITRS-K-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHcCC-H-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 7777777776 789999999999999854 2 2233332 5788999998876544 89999999888875443332
Q ss_pred ------HHhHHHHHHhhhcC-CCh-------------hhHHHHHHHHHHHHhhCc---hhhhh-hhc--hhHHHHhhhhc
Q 000051 1456 ------VKLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLT 1509 (2612)
Q Consensus 1456 ------v~~ilp~Ll~~L~~-~~w-------------~~r~~a~~~L~~ia~~~p---~~l~~-~L~--~ivp~L~~~L~ 1509 (2612)
....+|+|++.|.. ..- ..+..|+.+|..++.... +.... -+. ..+|.+..++.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 13678999988872 211 237789999999998642 22222 232 58899999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCChhH--hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000051 1510 DTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i--~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
+.+..||.+|++++.+++.. ++. +.+ ... ..+.-..-++.+...++.
T Consensus 617 s~n~~VrrAA~elI~NL~~~---~e~i~~k~---------------------------~~~-~~~~~~~rL~lLV~Ll~s 665 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSH---PLTIAAKF---------------------------FNL-ENPQSLRNFNILVKLLQL 665 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTS---GGGTGGGT---------------------------SCC-SSHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHHhCC---cHHHHHHH---------------------------Hhh-cCchhhccHHHHHHHHcC
Confidence 99999999999999999862 221 111 000 001111124566677777
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhH--hhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~ 1649 (2612)
.+.++|+.|+.++.++... ++......+ +..++.+..++.+ +++++|..++.++..++..
T Consensus 666 ~D~~~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999988642 211111111 2466777777777 8999999999999999973
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-07 Score=113.00 Aligned_cols=237 Identities=19% Similarity=0.124 Sum_probs=175.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--- 1454 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--- 1454 (2612)
.++.+.+.+.+. ++..|..|+.++..++...+......+. ..+|.++..+.++++.+|..+..++..+...-+..
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 456677778877 6999999999999998654422222222 58999999999999999999999999987542222
Q ss_pred hH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
.+ ...+|.++..+.+++..++..++.+|+.++...++..... -...+|.+.+++.++++.+|..|+.+|+.++..-
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 11 3578999999999999999999999999997555432221 2468899999999999999999999999997531
Q ss_pred hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1533 ~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
+.... .+. -...+|.+...+.+.++.+|..++.++++++.. ++..
T Consensus 160 ~~~~~---------------------~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 204 (252)
T 4hxt_A 160 DEAIK---------------------AIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSA 204 (252)
T ss_dssp HHHHH---------------------HHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHH
T ss_pred HHHHH---------------------HHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence 11100 000 013566777777777889999999999998862 2111
Q ss_pred chhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1613 l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
.... -..+++.+.+++.++++.+|..|..+|+.+....+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 2357899999999999999999999999999865543
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.82 E-value=8.6e-07 Score=124.50 Aligned_cols=770 Identities=13% Similarity=0.082 Sum_probs=381.9
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhc----CCChhhHHHHHHHHH--HH
Q 000051 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLG--AM 1485 (2612)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~--~i 1485 (2612)
+.+.+.-..++..++......-+.||..|..++..++..++. ....++|.+++.|+ +.+...-+||+.+|. .+
T Consensus 125 r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g-s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 125 RKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG-SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp BCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred cCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 346666678888888888889999999999999999987743 34677788877764 456677788888774 44
Q ss_pred HhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH-----hhHHHHHHhhcCCCChhHHHHHHHH
Q 000051 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2612)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~ivp~Ll~~l~d~~~~~r~al~~L 1560 (2612)
..... .-...++.+++.++++....+|.|+..+..+...+......|.. ..++ ..+..|++.+..+++..
T Consensus 204 ~~~~~-~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 204 HRKLM-TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHHGG-GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHH
T ss_pred hhHHh-cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHH
Confidence 33222 12345678889999988777899998888777777765543311 1111 12222222111111110
Q ss_pred Hhc--cccccCChhhHhhHHHHHHHhh-cCCC--HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHH
Q 000051 1561 LQT--TFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2612)
Q Consensus 1561 ~~~--~~~~~i~~~~l~~iip~L~~~l-~d~s--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~V 1635 (2612)
-.. .-... -...+..+...+.... ++.. |+....++..+-++..... .|+-+.++..+.+.+.++.|.+
T Consensus 279 ~~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d-----~~~~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 279 KLAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE-----SKPDKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS-----CCCCHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHhhcCCCHHH
Confidence 000 00000 0001111222222222 2334 7777666666444443211 3344567777777777777888
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhH
Q 000051 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2612)
Q Consensus 1636 R~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~ 1715 (2612)
|..|..++..+....... . . ...+. . . .++. ...|.-+....++++...+.
T Consensus 353 R~~a~~~l~~il~~~k~~---~----~---~~~d~-~-----------~---~~~~----~~~p~~~~l~~~~~~~~~~~ 403 (997)
T 1vsy_5 353 IHLVVKSLLSTCNKIISL---S----D---YEYDI-T-----------R---AYKN----EFNPSFVEILDTSTTSFPKT 403 (997)
T ss_dssp HHHHHHHHTHHHHHHHHH---H----H---HTTCG-G-----------G---GSSS----SCCCTTEEEEESCSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhh---h----c---CCCcH-H-----------H---hhcc----ccCCCCceecCCCCccHHHH
Confidence 877777777666543210 0 0 00000 0 0 0000 00000000000011111111
Q ss_pred HHHHHHH------hh--h-h-----hccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHh
Q 000051 1716 YLTLFKY------LP--R-S-----LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2612)
Q Consensus 1716 ~~~~l~~------L~--~-~-----~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~ 1781 (2612)
....+.. +. . . -|+.+.-|-+.- | .+ +-++ .-..+.+.++ +...++-++.+...+.
T Consensus 404 ~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~-~----~l-~~~~-~e~~i~~~f~---~~~~~~~~~~l~~~l~ 473 (997)
T 1vsy_5 404 FTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKA-L----KL-NLRE-NELEVLKTAG---HLLTREFLRDVTMNLV 473 (997)
T ss_dssp HHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTC-C----CC-CCCH-HHHHHHHHHH---TTCCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCC-C----CC-CCCH-HHHHHHHHHH---hhcCHHHHHHHHHHHH
Confidence 1111000 00 0 0 011111111111 1 11 1111 1111111111 1111122222222211
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHH
Q 000051 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2612)
Q Consensus 1782 ~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR 1861 (2612)
+. .+.+.+.+..-+.++..+..-+ ....|...++.+.+.+-....|.+..-.
T Consensus 474 qe-~~~~~~F~~~~v~l~k~lf~l~---------------------------~rn~~~~~l~~l~~~~e~L~~~~dk~~q 525 (997)
T 1vsy_5 474 QD-NETRGVFSSGNVSFFSLVILLI---------------------------SSGFCELNMSDLFELCESYYNKDDKASM 525 (997)
T ss_dssp HT-TTTTCCCCHHHHHHHHHHHHHH---------------------------TTTTCCCCGGGHHHHHHHTCCSSCHHHH
T ss_pred hh-ccccCccccchHHHHHHHHHHH---------------------------hcccchhhHHHHHHHHHHHhccccHHHH
Confidence 11 1111111122222222221110 0112333444444444444566777788
Q ss_pred HHHHHHHHHHHhcCh----hhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhh--h-c-
Q 000051 1862 QAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR--G-L- 1932 (2612)
Q Consensus 1862 ~aA~~~l~~l~~~~~----~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~--~-L- 1932 (2612)
.+|++++..+..+.. ........-+.|.+-+.+. +-+++....-..++.-+....++.-.+.++..|.. . +
T Consensus 526 r~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~ 605 (997)
T 1vsy_5 526 IMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFD 605 (997)
T ss_dssp HHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccC
Confidence 899999999987543 3445667777888888887 45665555555666666666666656666666632 1 1
Q ss_pred -CCCCh---hHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHH
Q 000051 1933 -KDPSA---SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008 (2612)
Q Consensus 1933 -~d~~~---~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~L 2008 (2612)
.+... ..|... |..++...+-. ... ...++..+. +..+...||++....+..+....-...... +..+
T Consensus 606 ~~~~ssf~~~~rl~l---l~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~-~~~~ 677 (997)
T 1vsy_5 606 RESDAATHQTSKIYM---LRSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD-PTTL 677 (997)
T ss_dssp CCSSCCCCCCSSHHH---HHHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC-HHHH
T ss_pred CCCCcHHHHHHHHHH---HHHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC-HHHH
Confidence 11111 123332 22233322211 111 233444444 778889999999999988866531111111 1222
Q ss_pred HHhccCC---------CcchHHHHHHHHHhhhc---ccccccccchhhccCCcchh----HHHHHHHHHHHhCCC----h
Q 000051 2009 LHALEDD---------QTSDTALDGLKQILSVR---TTAVLPHILPKLVHLPLSAF----NAHALGALAEVAGPG----L 2068 (2612)
Q Consensus 2009 l~~L~~~---------~~~~~al~~L~~il~~~---~~~vlp~Lip~L~~~~~~~~----~~~al~~La~~~g~~----l 2068 (2612)
++.-.++ .......+.+..++..- ...+- ...|. ...... ....+..|...++.. +
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~~~~~---~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l 753 (997)
T 1vsy_5 678 LEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-GLNPQ---QFIKTDYFYRTSTIFYWIKEMARGPNKVLL 753 (997)
T ss_dssp HHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-SCCST---TTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred HHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-ccCcc---ccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 3221111 01122222233332110 00000 00000 000111 123444555555554 7
Q ss_pred hhhHhh-HHHHHHHhcCCCCH-HHHHH-HHHHHHHhhhhc-ccccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHH-Hh
Q 000051 2069 NFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLVI-DEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFY-KN 2142 (2612)
Q Consensus 2069 ~~~l~~-il~~Ll~~L~~~~~-~vr~~-a~~al~~l~~~~-~~~~l~~ll~~Ll~~l~-~~~~~vR~~A~~~L~~l~-~~ 2142 (2612)
.++++. ++|.++.....++. ++... +..++..+.... ..+.++.++..+.+..+ +.+| .|.+++..+..+. .+
T Consensus 754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 777777 88888777655544 45444 444555543322 34557777877777666 5789 9999999987764 33
Q ss_pred cccchhccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhhhhhhhhhcCCcccccC
Q 000051 2143 SKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2612)
Q Consensus 2143 ~~~~~~~~~~~il~~L~~ll~d~d-~~V~~~a~~aL~~l~~~~-~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2612)
.-.--......++..++.++.|+. .+||+.|..+|+.++++. +......++..+++. ...
T Consensus 833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~------------~~~------ 894 (997)
T 1vsy_5 833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG------------LDV------ 894 (997)
T ss_dssp TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS------------STT------
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH------------Hhh------
Confidence 321112334577888888999999 999999999999999875 422211122111100 000
Q ss_pred CCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHH
Q 000051 2221 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 2300 (2612)
Q Consensus 2221 ~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~ 2300 (2612)
.+. ....+.. .. . +...|-++...|+.++
T Consensus 895 ---~~~---------------~~~~~~~-----------~~-~---------------------~~~~rH~aVLgL~AlV 923 (997)
T 1vsy_5 895 ---NKY---------------TSKERQK-----------LS-K---------------------TDIKIHGNVLGLGAII 923 (997)
T ss_dssp ---TSS---------------CHHHHHH-----------HH-H---------------------HCHHHHHHHHHHHHHH
T ss_pred ---ccc---------------ccccccc-----------cc-h---------------------HHHHHHHHHHHHHHHH
Confidence 000 0000000 00 0 0024556777788888
Q ss_pred HhcCCCc--cCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 000051 2301 RKGGIAL--KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343 (2612)
Q Consensus 2301 ~~~~~~l--~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~ 2343 (2612)
...|-.+ -+++|+++..+.+...|+.+ ++..+-++|+.+-..
T Consensus 924 ~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 924 SAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp TTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred hhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 8887776 67999999999888888655 999999999998543
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.9e-08 Score=116.29 Aligned_cols=231 Identities=16% Similarity=0.123 Sum_probs=168.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2612)
..+.+.+.+.+. ++..|..|+.++..+...........+. ..+|.++..+.++++.+|..|..++..+...-+.. .
T Consensus 13 ~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456677777777 6888999999996655442221222222 58899999999999999999999999887532222 1
Q ss_pred H--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh-hhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
+ ...+|.+++.|.++++.++..++.+|+.++...+.. ..-.-..++|.+.+++.+.++.||..|+.+|+.++..-
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-- 169 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 169 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 347899999999999999999999999999876554 22223568899999999999999999999999998532
Q ss_pred hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1533 ~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
+... . .+. -..++|.+.+.+.+.++.++..++.++++++.. ++..
T Consensus 170 ~~~~---~------------------~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 214 (252)
T 4db8_A 170 NEQI---Q------------------AVI------------DAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 214 (252)
T ss_dssp HHHH---H------------------HHH------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS--CHHH
T ss_pred hHHH---H------------------HHH------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC--CHHH
Confidence 1110 0 000 012456677777777889999999999999852 2222
Q ss_pred chhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1613 MIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1613 l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
...+. ...++.+..++.++++.+|..|..+|+.++
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 22222 248888999999999999999999998765
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-06 Score=114.78 Aligned_cols=346 Identities=13% Similarity=0.072 Sum_probs=229.7
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch---h--HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh---C
Q 000051 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---G 1370 (2612)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~---~--~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g 1370 (2612)
..-++.|+..|..+++++|..++.+|..+.....+. . ...|+.|++.|.. .+...+..|+.+|..++.+. .
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHH
Confidence 335778888999999999999999987776422211 1 2356777777654 45789999999999998641 2
Q ss_pred cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc------------------CCC
Q 000051 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQ 1432 (2612)
Q Consensus 1371 ~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l------------------~D~ 1432 (2612)
...+.....++.|.+.+.+..+...++.|..++..|+.. ...-...+...+|.++..+ ...
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 223334467888888888644678888888888888752 2111122345567776654 112
Q ss_pred CHHHHHHHHHHHHHHHHhhcH--HhH---HhHHHHHHhhhcC------CChhhHHHHHHHHHHHHhhCchhhh-------
Q 000051 1433 VVAVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLS------- 1494 (2612)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~ia~~~p~~l~------- 1494 (2612)
++.|++.|..+++.+...-.. ..+ ..+++.|+..+.+ .+......|+.+|..+++.......
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 578999999999988653222 111 2355667666643 3556788899999888875311110
Q ss_pred -----------------h--hhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCC--h----hH--hhHHHHHHhhc
Q 000051 1495 -----------------Q--CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN--P----EI--ASLVPTLLMGL 1546 (2612)
Q Consensus 1495 -----------------~--~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~--~----~i--~~ivp~Ll~~l 1546 (2612)
. ..+..++.++.++.+ .++.++++|+.||..++..-.. . .+ ...+|.|.+.+
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 0 123567788888854 5799999999999999753110 1 12 35689999999
Q ss_pred CCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHhhccCCCCcchhh-
Q 000051 1547 TDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2612)
Q Consensus 1547 ~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~--------s~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2612)
..++..++ .++.+|.............-...+|.|.+.|.+. +.++...++.++++++.. +++.....
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~ 442 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLR 442 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence 88887765 4555554422222222222356788888888764 468888999999998752 32222211
Q ss_pred HhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000051 1617 IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~ 1648 (2612)
-...+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 443 ~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 235788888888875 88999999999998875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=111.80 Aligned_cols=185 Identities=22% Similarity=0.211 Sum_probs=147.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2612)
..++.|.+.+.++ ++.+|..|+.+++.+.. ...+|.++..+.|+++.||..+..++..+.. .
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4567788888876 89999999988876532 2567888899999999999999999887732 4
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
..+|.+.+.|.++++.+|..++.+|+.+.. +..++.|.++++|+++.||..|+.+|+.++. ..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 143 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 143 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------HH
Confidence 567888889999999999999999998742 3567888899999999999999999999864 24
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
.++.|.+.+.|++..+| .++.+|... .. ...++.|...+++.++.+|..|..+|+.+...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~------~~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEI------GG---ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH------CS---HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh------Cc---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 67888889999999888 566666542 11 45678888888999999999999999887653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-07 Score=122.18 Aligned_cols=336 Identities=14% Similarity=0.118 Sum_probs=221.1
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh-hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH---
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--- 1535 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--- 1535 (2612)
+|.++..|.++++..+..|+.+|..++...+..- .-.-...+|.|+++|.++++.++..|+++|..++.. +++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 6778888888888889999999999886544321 222356789999999999999999999999999874 2322
Q ss_pred ---hhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhh--------cC--------CCHHHHH
Q 000051 1536 ---ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKK 1594 (2612)
Q Consensus 1536 ---~~ivp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l--------~d--------~s~~vr~ 1594 (2612)
...+|.|.+.+. +++..++ .+..+|.................+|.|.+.+ .+ .+..+.+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 356899999998 6666665 4555554422222111112235778888877 22 2356667
Q ss_pred HHHHHHHHHhhccCCCCcchhhH--hhhHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhh----------------
Q 000051 1595 KAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM---------------- 1650 (2612)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d------~~~~VR~~A~~aL~~L~~~~---------------- 1650 (2612)
.|+.++.+++.. ++...... +..++.|..++.+ ++..+.+.+..++..+....
T Consensus 162 ~a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 162 NATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 999999999863 21111112 2466666666653 34456666666666553110
Q ss_pred ------------------------------------CCC--CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-
Q 000051 1651 ------------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT- 1691 (2612)
Q Consensus 1651 ------------------------------------g~~--~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~- 1691 (2612)
|-+ ...+.++.+...|.+..+...+..++.+|+.++.+-+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 000 11345777778787766666777888888888754332
Q ss_pred ------hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhH-HhHHHHHHhhcCCCCh------hHHHH
Q 000051 1692 ------VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENE------SVRDA 1756 (2612)
Q Consensus 1692 ------~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l-~~iip~ll~~L~d~~~------~VR~~ 1756 (2612)
..+ ...+|.+++.+.+++..+|..++.++..++..- .....+ ...+|++.+.|...+. ++...
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 112 356899999999999999999999999997632 222222 3589999999987543 46667
Q ss_pred HHHHHHHHHHHhhhc--hh--hhhHHHHhhccCCC-chHHHHHHHHHHHHH
Q 000051 1757 ALGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1757 Al~al~~lv~~~~~~--~i--~~llp~L~~~l~d~-~w~vR~~a~~ll~~l 1802 (2612)
++.++..++..-+.. .+ ...+|.+.+.+.++ +.+++..|..++..+
T Consensus 397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 777777765322211 11 12567777777777 788888888777654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-07 Score=95.95 Aligned_cols=215 Identities=18% Similarity=0.292 Sum_probs=164.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCcccc
Q 000051 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2612)
Q Consensus 2111 ~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2612)
..++..++..+.|+-|.+|.+|+..+..+.+..+ .....++..|+.++. +..-...+....+++.+..-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 4677888888888899999999999999887554 344566677777754 444444455555666554321
Q ss_pred ccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch
Q 000051 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2612)
Q Consensus 2190 ~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v 2269 (2612)
|+-+.+++|++.....-|++..|.+...+|+.+....+ ..+.
T Consensus 102 ----------------------------------Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~--- 143 (253)
T 2db0_A 102 ----------------------------------PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMA--- 143 (253)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHH---
T ss_pred ----------------------------------HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHH---
Confidence 34456778888888888999999999999999997765 3333
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhH
Q 000051 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP 2349 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ 2349 (2612)
.+..-+...+.++ +..-|.++|++++.++......+.||+|.|. ..|.|.++-||..|..+|++++...|.+.+
T Consensus 144 -~v~rdi~smltsk-d~~Dkl~aLnFi~alGen~~~yv~PfLprL~----aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 144 -SIVRDFMSMLSSK-NREDKLTALNFIEAMGENSFKYVNPFLPRII----NLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp -HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH----GGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred -HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccCccccCcchHHHH----HHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 3333345666665 6778999999999988877777788888765 468899999999999999999999898999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 000051 2350 LVGDLLSSLQVSDAGIREAILTALKGVLK 2378 (2612)
Q Consensus 2350 ~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~ 2378 (2612)
.+...+..++++...++...-.+|..+.-
T Consensus 218 ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999988887788887777776653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.5e-08 Score=112.51 Aligned_cols=188 Identities=20% Similarity=0.164 Sum_probs=145.8
Q ss_pred hhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000051 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~ 1811 (2612)
.++-+...+.+++.|.|++..+|..|..++..+- . +..+|.+.+.+.|+++.+|..++..++.+-
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----~---~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----D---ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC----C---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcC----C---hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 3445668899999999999999999998887532 2 235677777888999999999999988761
Q ss_pred cccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 000051 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2612)
Q Consensus 1812 ~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~ 1891 (2612)
+ + ..++.+...+.|.+..||..|+..++.+.. + ..++.+.
T Consensus 74 -------~-~----------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~--------~~~~~L~ 113 (201)
T 3ltj_A 74 -------D-E----------------------RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E--------RAVEPLI 113 (201)
T ss_dssp -------C-G----------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--------GGHHHHH
T ss_pred -------C-H----------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H--------HHHHHHH
Confidence 0 0 112233345678899999999999987643 2 2355567
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH
Q 000051 1892 SSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2612)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2612)
..+.++++.+|..|+.+|+.+.. +..++.|...+.|+++.+|..++.+|+.+ +. +..++.+.
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~-------~~~~~~L~ 175 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEI----GG-------ERVRAAME 175 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CS-------HHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc-------hhHHHHHH
Confidence 77899999999999999988732 45677888888999999999999999986 22 34677778
Q ss_pred HHhcCCcHHHHHHHHHHHHHH
Q 000051 1972 TALCDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1972 ~~L~D~d~~Vr~~A~~al~~l 1992 (2612)
..+.|+++.||..|..+++.+
T Consensus 176 ~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 176 KLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHH
Confidence 888899999999999998875
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-07 Score=111.12 Aligned_cols=229 Identities=18% Similarity=0.156 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh-----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC--cch
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 1373 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~ 1373 (2612)
.++.++..|.++++++|..++.++..+.....+.. ...++.+++.|... +...|..|+.+|+.++.... ...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence 36788999999999999999999988875443221 23577777766654 47889999999999986421 122
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000051 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1374 l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+...+.++.+.+.+.+. ++..|..|+.++..++...+......+ ...+|.++..+.++++.+|..+..++..+...-+
T Consensus 82 ~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 22346788888888876 799999999999999853332111111 2579999999999999999999999999876432
Q ss_pred HH--h--HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1453 AQ--G--VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1453 ~~--~--v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
.. . -...+|.+++.+.++++.++..++.+|+.++...+...... -..+++.+.+++++.++.||..|+++|.+++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 22 1 14578999999999999999999999999997655443222 2468899999999999999999999999999
Q ss_pred hhcC
Q 000051 1528 SVIK 1531 (2612)
Q Consensus 1528 ~~~~ 1531 (2612)
....
T Consensus 241 ~~~~ 244 (252)
T 4hxt_A 241 SGGW 244 (252)
T ss_dssp HTCB
T ss_pred cCCC
Confidence 7654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.74 E-value=9.5e-07 Score=116.40 Aligned_cols=342 Identities=13% Similarity=0.102 Sum_probs=221.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2612)
++.+..++.+. ++..+..|+.++..++..-+. ....+ ...+|.++.++.++++.++..|..++..+...-++. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566677776 678899999999988743221 12122 257999999999999999999999999997642222 1
Q ss_pred H--HhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh--------cCC--------CHHHH
Q 000051 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2612)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L--------~D~--------~~~VR 1516 (2612)
+ ...+|.|++.|. +.+...+..++.+|..++.+ ++.-.......+|.|++++ .++ ++.|+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 346899999998 77889999999999999987 3221112237888899888 322 45666
Q ss_pred HHHHHHHHHHHhhcCCh-hH---hhHHHHHHhhcCC------CChhH-HHHHHHHHhcccc-------------------
Q 000051 1517 SAGQTALQQVGSVIKNP-EI---ASLVPTLLMGLTD------PNDHT-KYSLDILLQTTFV------------------- 1566 (2612)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~-~i---~~ivp~Ll~~l~d------~~~~~-r~al~~L~~~~~~------------------- 1566 (2612)
..|+++|..++..-.+. .+ ...+|.|...+.+ ++..+ ..|+..+....+.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999998751111 12 1677777776653 33332 2333322211000
Q ss_pred -----------c----------------------cCChhhHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhccCCC-C
Q 000051 1567 -----------N----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 1611 (2612)
Q Consensus 1567 -----------~----------------------~i~~~~l~~iip~L~~~l~d-~s~~vr~~a~~~l~~l~~~~~~~-~ 1611 (2612)
. ....-.....++.+...+.+ .++.++..|+.++++++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0 00000112345666666654 46899999999999998631110 0
Q ss_pred cc-hhhH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--CchhhHHHHHHHhccCCC-----HHHHHHHHHH
Q 000051 1612 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 1681 (2612)
Q Consensus 1612 ~l-~~~l--~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~--~~~~ll~~L~~~L~~~~~-----~~~R~~aa~~ 1681 (2612)
.+ ...+ ...+|.|.+++.+++.++|..|+.+|+.++..-.-. .-...+|.|.+.|...++ ......++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1112 357899999999999999999999999998732111 124578888888876532 2234455666
Q ss_pred HHHHHHHhChh--hH--HhHhHHHHHhccCC-ChhhHhHHHHHHHHhh
Q 000051 1682 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2612)
Q Consensus 1682 L~~i~~~~g~~--~l--~~llp~l~~~~~~~-~~~vR~~~~~~l~~L~ 1724 (2612)
++.++..-... .+ ...++.+.+.+.+. +..+++.+..++..+.
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77766433221 11 35678888888888 8899998888887664
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.1e-05 Score=112.39 Aligned_cols=545 Identities=12% Similarity=0.077 Sum_probs=276.3
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHHH
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWLL 1663 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L-~d~~~~VR~~A~~aL~~L~~~----~g~~~~~~ll~~L~ 1663 (2612)
+...|+.|.+.+..+-... + ... .....+. .+.++.+|..|+..|...+.. +.++....+-..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p-~------~~~---~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC-P------ICV---PCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC-T------THH---HHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc-h------HHH---HHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 5678888888888765431 1 111 1112222 455788999999988887754 22222333444455
Q ss_pred HHhccC------CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc--------
Q 000051 1664 DALKSD------NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-------- 1729 (2612)
Q Consensus 1664 ~~L~~~------~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~-------- 1729 (2612)
+.+.+. .+..+|...++.++.++....++.++++++.+++.+++ ++..++.++.+|..++.....
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r 174 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQR 174 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHH
Confidence 554432 34678888999999999887777888999999888765 566788899888888764211
Q ss_pred ------chhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhcc--CCCchHHHHHHHHHHHH
Q 000051 1730 ------QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI--FNDNWRIRQSSVELLGD 1801 (2612)
Q Consensus 1730 ------~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l--~d~~w~vR~~a~~ll~~ 1801 (2612)
.+..+++.+++.+...+.+ .+..+... -+.. ... ...+-.++..+++.++.
T Consensus 175 ~~~l~~~l~~~~~~I~~~~~~iL~~---------------~~~~~~~~-----~~~~-~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 175 RRDIQQTLTQNMERIFSFLLNTLQE---------------NVNKYQQV-----KTDT-SQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHH---------------HHHHHHHH-----TTCS-TTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcc-----cccc-cchhhhhhhHHHHHHHHHHHHH
Confidence 0111111222222211110 00000000 0000 000 01123355555555554
Q ss_pred HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC--hhhH
Q 000051 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT--PKTL 1879 (2612)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~--~~~l 1879 (2612)
++.-++ . ..+.+ ..+.++..++....+ ..+|.+|++++..++... +...
T Consensus 234 ~l~Wi~------------------~----~~i~~-----~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~ 284 (1204)
T 3a6p_A 234 YIDWVS------------------M----SHITA-----ENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR 284 (1204)
T ss_dssp TTTTSC------------------H----HHHHT-----TTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH
T ss_pred HHhccC------------------H----HHHHh-----ccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH
Confidence 321100 0 00000 011244455544444 468999999999998744 3332
Q ss_pred HHHHH----HHHHHHHHHhc--C------CCHHHHHHHHHHHHHHHHHh-----------chhhhhhHHHHHhhhcCCCC
Q 000051 1880 KEIMP----VLMNTLISSLA--S------SSSERRQVAGRALGELVRKL-----------GERVLPSIIPILSRGLKDPS 1936 (2612)
Q Consensus 1880 ~~~l~----~ll~~L~~~L~--~------~~~~~R~~A~~aL~~lv~~~-----------~~~~l~~llp~L~~~L~d~~ 1936 (2612)
.+++. ..+..++.... + .+++.+...++.+..+.... ....+..+++.+.....+++
T Consensus 285 ~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~ 364 (1204)
T 3a6p_A 285 KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPS 364 (1204)
T ss_dssp GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCcc
Confidence 22222 22333444431 1 12222222222222222110 11235678888888888888
Q ss_pred hhHHHHHHHHHHHHHHhh---ChhhHHHhHhHHHHHHHH---Hhc---CC--------------cH-------HHHHHHH
Q 000051 1937 ASRRQGVCIGLSEVMASA---GKSQLLSFMDELIPTIRT---ALC---DS--------------IL-------EVRESAG 1986 (2612)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~---~~~~l~~~l~~ll~~l~~---~L~---D~--------------d~-------~Vr~~A~ 1986 (2612)
..+-..++..-..++... ..+.+.++++.+++.+.. .+. +. ++ +.|....
T Consensus 365 ~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~ 444 (1204)
T 3a6p_A 365 QFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQG 444 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHH
Confidence 777777665444444432 124456788888888732 221 10 00 1233333
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhc-ccc-cccccchhhccCCcchhHHHHHHHHHHHh
Q 000051 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVR-TTA-VLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2612)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~-~~~-vlp~Lip~L~~~~~~~~~~~al~~La~~~ 2064 (2612)
..+..++...+...+..+.+.+...+.+.-.....-. .+... ++. .....-+.... ......++.++.+.+
T Consensus 445 d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~s~~~~~---~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 445 EVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNS----CSAVGTGEGSLCSVFSPSFVQ---WEAMTLFLESVITQM 517 (1204)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTCC---------------------CCSCSSSHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccccc----ccccccccccccCcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 3333333322222333333444333322100000000 00000 000 00000000000 001122333333322
Q ss_pred -CCChhhhHh-hHHHHHHHhc---CCCCHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHhhcCC------------CC
Q 000051 2065 -GPGLNFHLG-TILPALLSAM---GDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGD------------NQ 2125 (2612)
Q Consensus 2065 -g~~l~~~l~-~il~~Ll~~L---~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~~------------~~ 2125 (2612)
...-.++++ .+++.++..+ ...++.+|...+.+++.+...+. ++.+.++++.++..+.+ .+
T Consensus 518 ~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 518 FRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred hcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 000012222 2455555553 44688899999999988877553 46788899988877655 23
Q ss_pred hhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHHHhhcCc-----cccccHHHHHH
Q 000051 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVPK-----EVQPSYIKVIR 2197 (2612)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d---~~V~~~a~~aL~~l~~~~~~-----~~l~~lv~~l~ 2197 (2612)
..+|.+|+.++..+++..+..+.+|++++...+..++.... ..-+..-.+++..+....+. .++..++.++.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999888776433 44455566777766544332 23555666666
Q ss_pred HHHH
Q 000051 2198 DAIS 2201 (2612)
Q Consensus 2198 ~~l~ 2201 (2612)
+.+.
T Consensus 678 ~~w~ 681 (1204)
T 3a6p_A 678 SIWL 681 (1204)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 5554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=115.04 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=169.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh-----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC--cch
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 1373 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~ 1373 (2612)
.++.+...|.++++++|..++.++..++....+.. ...++.+++.|...+ ...|..|+.+|+.++.+.. ...
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 36677777888888999999999976665422211 235667777666544 7899999999999986422 122
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000051 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1374 l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+.....++.+.+.+.+. ++..|+.|+.+++.++..........+. ..+|.++..+.++++.+|..+..++..+...-+
T Consensus 92 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 22346788899999887 7999999999999997644321112222 589999999999999999999999998875432
Q ss_pred HHh---H-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1453 AQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1453 ~~~---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
... + ...+|.+++.+.+++..++..++.+|+.++...+....... ..+++.+.+++.+.+++||..|+.+|.+++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 221 1 56789999999999999999999999999976665433322 358899999999999999999999999876
Q ss_pred h
Q 000051 1528 S 1528 (2612)
Q Consensus 1528 ~ 1528 (2612)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-06 Score=112.10 Aligned_cols=304 Identities=13% Similarity=0.083 Sum_probs=191.6
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh--cCCh-hH--hhHHHHHHhhcCC-CChhHH-HHHHHHHhccccccCC
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-EI--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVD 1570 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~-~i--~~ivp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~i~ 1570 (2612)
...+|.|+++|.+.++.||..|+++|..++.. -.+. .+ ...+|.|++.+.. ++..++ .+..+|..........
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 35679999999999999999999999999863 1222 12 4578889888875 444544 3333333211111111
Q ss_pred hhhHhhHHHHHHHhh------------------cCCCHHHHHHHHHHHHHHhhccCC-CCcchhhHhhhHHHHHHHhc--
Q 000051 1571 APSLALLVPIVHRGL------------------RERSAETKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV-- 1629 (2612)
Q Consensus 1571 ~~~l~~iip~L~~~l------------------~d~s~~vr~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~-- 1629 (2612)
.......+|.|.+.+ ...+.+++..|+.+|.+++..-.+ .+.+.. ...+++.|...+.
T Consensus 169 ~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHh
Confidence 111122355555543 112468999999999999863111 011111 1234455555543
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhhCC------------------------C-----CchhhHHHHHHHhccCCCHHHHH
Q 000051 1630 ----DPIPEVRSVAARAIGSLIRGMGE------------------------E-----NFPDLVSWLLDALKSDNSNVERS 1676 (2612)
Q Consensus 1630 ----d~~~~VR~~A~~aL~~L~~~~g~------------------------~-----~~~~ll~~L~~~L~~~~~~~~R~ 1676 (2612)
+++....+.|..+|..|+..... . .-...++.++..+........+.
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 35667888888888887754310 0 01245677778886655566777
Q ss_pred HHHHHHHHHHHHhChh------hH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCC
Q 000051 1677 GAAQGLSEVLAALGTV------YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2612)
Q Consensus 1677 ~aa~~L~~i~~~~g~~------~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d 1748 (2612)
.++.+|..++.+-+.. .+ ...+|.++..+.+++..+++.++.++..++..-... ...-...+|.+...|.+
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcC
Confidence 8888888886532211 12 456899999999999999999999999998754432 12234589999999987
Q ss_pred C--------ChhHHHHHHHHHHHHHHHhhhc--h-hh-hhHHHHhhccCCC--chHHHHHHHHHHHHHH
Q 000051 1749 E--------NESVRDAALGAGHVLVEHYATT--S-LP-LLLPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1749 ~--------~~~VR~~Al~al~~lv~~~~~~--~-i~-~llp~L~~~l~d~--~w~vR~~a~~ll~~ll 1803 (2612)
. .+.+...++.++..++..-... . ++ ..+|.|...+.+. ..+++..|..++..+.
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 5 3567778888887765321111 1 11 2567777766664 6677777887777764
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-06 Score=111.42 Aligned_cols=309 Identities=11% Similarity=0.047 Sum_probs=199.7
Q ss_pred HhHHHHHHhhhcCCC------------hhhHHHHHHHHHHHHhhCchhhhhh--------hc---hhHHHHhhhhcCCC-
Q 000051 1457 KLVLPSLLKGLEDKA------------WRTKQSSVQLLGAMAYCAPQQLSQC--------LP---KIVPKLTEVLTDTH- 1512 (2612)
Q Consensus 1457 ~~ilp~Ll~~L~~~~------------w~~r~~a~~~L~~ia~~~p~~l~~~--------L~---~ivp~L~~~L~D~~- 1512 (2612)
...+|.+++.|...+ ...+..|.++|..++.+.|++.... |+ ...+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 567888888877532 4788899999999999888764331 11 11233444443321
Q ss_pred -HH-----HHH-------HHHHHHHHHHhhcCChh-H--hhHHHHHHhhcC----------CC-ChhH-HHHHHHHHhcc
Q 000051 1513 -PK-----VQS-------AGQTALQQVGSVIKNPE-I--ASLVPTLLMGLT----------DP-NDHT-KYSLDILLQTT 1564 (2612)
Q Consensus 1513 -~~-----VR~-------aA~~aL~~l~~~~~~~~-i--~~ivp~Ll~~l~----------d~-~~~~-r~al~~L~~~~ 1564 (2612)
.+ |++ .|+++|++++..-.+.. + ...++.|...+. +. +..+ ++|..+|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 666 88888988865422221 1 346677777663 11 1222 35655554422
Q ss_pred ccccCChhh---HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh--HhhhHHHHHHH-hcCCCHHHHHH
Q 000051 1565 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKV-LVDPIPEVRSV 1638 (2612)
Q Consensus 1565 ~~~~i~~~~---l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~-L~d~~~~VR~~ 1638 (2612)
+........ ....+|.|.+.+.+.+.+++..|+.+|.+++.. .+ .+.... -...+|.|.++ +.+.++.+++.
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~-~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-AD-VNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CC-HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CC-HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 211101111 234689999999999999999999999999752 11 111111 12567888886 45678999999
Q ss_pred HHHHHHHHHhhhCCC---C--chhhHHHHHHHhccCCCH---HHHHHHHHHHHHHHHH--hChhh---H--HhHhHHHHH
Q 000051 1639 AARAIGSLIRGMGEE---N--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTVY---F--EHILPDIIR 1703 (2612)
Q Consensus 1639 A~~aL~~L~~~~g~~---~--~~~ll~~L~~~L~~~~~~---~~R~~aa~~L~~i~~~--~g~~~---l--~~llp~l~~ 1703 (2612)
|+.+++.++....+. . ....+|.|...+.+..+. ..+..++.+|..+... .+.+. + ...+|.+++
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 999999998733221 1 356788898888765432 3566677777776642 12221 1 346889999
Q ss_pred hccCCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000051 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2612)
Q Consensus 1704 ~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~ 1768 (2612)
.+.+.+..+++.++.++..++....+ ...++ ...+|++...+...++.+++.|..++..+..+-
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCHH-HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999743222 22333 237999999999999999999999998877543
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.2e-06 Score=99.29 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcc---cchhh-HHH
Q 000051 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFEPY-VIQ 1420 (2612)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i----~~~~~~~~R~~Al~al~~L~~~~~~---~~~~~-v~~ 1420 (2612)
+.+|..|..|...|...+...+...+ ..++.+.+++ .+. |+.+-..++..+..+...+++ .+.+| ...
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 34688888888887776654332222 2233334433 355 888888999999888876653 36666 478
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
++|.++..+||+++.||+.+..++..+....++ ..+++.+.+++.+++|++|.+++..++.+.....-.. ...
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~ 205 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKS 205 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGG
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccc
Confidence 999999999999999999999999888765544 4577788889999999999999999999886422221 335
Q ss_pred H---HHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh
Q 000051 1501 V---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2612)
Q Consensus 1501 v---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2612)
+ |.+.++++|++..||++|..|+..+-...++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 6 88899999999999999999999988887753
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-06 Score=108.58 Aligned_cols=315 Identities=13% Similarity=0.019 Sum_probs=199.4
Q ss_pred hcHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHHHhcccchhhHH-----------HHHHHHHHHcCCCC-
Q 000051 1377 YGIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI-----------QMLPLLLVAFSDQV- 1433 (2612)
Q Consensus 1377 ~~i~~~L~~~i~~~~-----------~~~~R~~Al~al~~L~~~~~~~~~~~v~-----------~ilp~ll~~l~D~~- 1433 (2612)
...+|.|.+++.... ++..|..|..++..++.+-++....... ...+.++.++..+.
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 366777777776532 3789999999999999887754443211 11244444444321
Q ss_pred -HH-----HHH-------HHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcC-----------CChhhHHHHHHHHHHH
Q 000051 1434 -VA-----VRE-------AAECAARAMMSQLSAQ--GV--KLVLPSLLKGLED-----------KAWRTKQSSVQLLGAM 1485 (2612)
Q Consensus 1434 -~~-----VR~-------aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~-----------~~w~~r~~a~~~L~~i 1485 (2612)
.+ ||+ .|..++..+... +.. .+ ...+|.|+..|.. .+...++.|+.+|..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 665 566666666332 111 11 3456666666531 1245688999999999
Q ss_pred HhhCchhh--hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhc
Q 000051 1486 AYCAPQQL--SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 1563 (2612)
Q Consensus 1486 a~~~p~~l--~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~ 1563 (2612)
+...+..- .......+|.|+.+|.+.+++|+..|+++|..++.. .++.. |.++-
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~------------------k~~I~----- 283 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNS------------------KKTLR----- 283 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHH------------------HHHHH-----
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHH------------------HHHHH-----
Confidence 98754321 112456789999999999999999999999999742 11111 10000
Q ss_pred cccccCChhhHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhccCCCCcchhh--HhhhHHHHHHHhcCCCH----HHH
Q 000051 1564 TFVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVR 1636 (2612)
Q Consensus 1564 ~~~~~i~~~~l~~iip~L~~~-l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~L~d~~~----~VR 1636 (2612)
-...+|.|.+. +...+..++..++.++.+++....+.+ ... ....+|.|..++.++.. +++
T Consensus 284 ----------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 284 ----------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp ----------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred ----------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 01234555554 344567788888888888876311111 111 24578889999886654 489
Q ss_pred HHHHHHHHHHHhh--hCCCC-----chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--hhhH--HhHhHHHHHhc
Q 000051 1637 SVAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG--TVYF--EHILPDIIRNC 1705 (2612)
Q Consensus 1637 ~~A~~aL~~L~~~--~g~~~-----~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g--~~~l--~~llp~l~~~~ 1705 (2612)
+.|..+|..++.. .+++. -...+|.|++.|.+.. ...+..++.+|+.+..... ...+ ...+|.+++.+
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998862 12221 1356888998887654 5578888888888863211 1122 35688999999
Q ss_pred cCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1706 SHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1706 ~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
.+.++.+|+.+..++..++..-+.
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred hCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999999999999999999876543
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=107.25 Aligned_cols=194 Identities=14% Similarity=0.184 Sum_probs=143.8
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHH
Q 000051 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2612)
Q Consensus 1780 L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~ 1859 (2612)
+.+.+.+++|+.|.++++-+..++...+... .+|+. ...+ ..+...+.....|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~~~-----~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQIY-----WRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CCT-----TSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HHHH-----HHHHHHHHHHhccchHH
Confidence 6678899999999999998888765421110 00000 0001 11223333456899999
Q ss_pred HHHHHHHHHHHHHhcCh------hhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1860 VR~aA~~~l~~l~~~~~------~~l~~~l~~ll~~L~~~-L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
|...+++++..++...+ ..+..++..+++.++.. +++....+|..+..++-.++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677888888865 8899999999999999888865442 345667788889
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhh--HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~--l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~ 1998 (2612)
.+++|.+|.+++.+|..++..+|... ..+.++.+++.+.+++.|.|+.||++|..++..++..+|.
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999998877543 3456778888899999999999999999999999998885
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-06 Score=101.08 Aligned_cols=192 Identities=16% Similarity=0.141 Sum_probs=143.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
...|.+...+.++++.+|..|..++..+...-+.. .+ ...+|.+++.|.++++..+..|+.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 45667778889999999999999999987533222 11 357899999999999999999999999999765544322
Q ss_pred hh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhH
Q 000051 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l 1574 (2612)
.. ...+|.++.+++++++.||..|+++|+.++..- +... ..+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 22 468899999999999999999999999998531 1110 0000 0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh-hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
...+|.+.+.+.+.+.+++..++.++++++.. .++.... .-...++.+.+++.++++.+|+.|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13567777777777889999999999999863 2111111 123578999999999999999999999998753
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.51 E-value=7.3e-06 Score=115.17 Aligned_cols=689 Identities=11% Similarity=0.066 Sum_probs=350.8
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHHhchh--h
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG--ELVRKLGER--V 1920 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~--~lv~~~~~~--~ 1920 (2612)
++..+...-...=..||..|-.++.......++....++|.+++.+-..+.+.+.+.-..|..+|. .+...+... .
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~ 213 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD 213 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH
Confidence 333444333444678999999999999998888888889998888877666655555555555543 333333332 5
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh-------------------------------------hHHHhH
Q 000051 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-------------------------------------QLLSFM 1963 (2612)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~-------------------------------------~l~~~l 1963 (2612)
.+.+++.+.++...+.+++..-+-.....++...... .....+
T Consensus 214 ~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~ 293 (997)
T 1vsy_5 214 IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLL 293 (997)
T ss_dssp HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888776666665443333323333211100 001111
Q ss_pred hHHHHHHHHHh-cCCc--HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCc--chHHHHHHHHHhhh-------
Q 000051 1964 DELIPTIRTAL-CDSI--LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSV------- 2031 (2612)
Q Consensus 1964 ~~ll~~l~~~L-~D~d--~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~------- 2031 (2612)
..+...+.... .+.+ ......++..+-.+........-.+++..+++.+.++.. +..++.++..++..
T Consensus 294 ~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~~ 373 (997)
T 1vsy_5 294 VDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSDY 373 (997)
T ss_dssp HHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 23333333333 1223 444444444433333222222223455566666655432 34455544443321
Q ss_pred --cccccccc-cch-hhc--cCCcchhHHHHHHHHHHHhCCC-hh--h-hHhhHH-HHHHHhcC------CCCHHHHHHH
Q 000051 2032 --RTTAVLPH-ILP-KLV--HLPLSAFNAHALGALAEVAGPG-LN--F-HLGTIL-PALLSAMG------DDDMDVQSLA 2094 (2612)
Q Consensus 2032 --~~~~vlp~-Lip-~L~--~~~~~~~~~~al~~La~~~g~~-l~--~-~l~~il-~~Ll~~L~------~~~~~vr~~a 2094 (2612)
.-+.+... ..| .+. ..+...+...-...+.+.-.+. +. . |.+-+. |.-+.... +-++..+.
T Consensus 374 ~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~-- 451 (997)
T 1vsy_5 374 EYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELE-- 451 (997)
T ss_dssp TTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHH--
T ss_pred CCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHH--
Confidence 00001100 000 000 0010011111111111100000 00 0 100000 00000000 11222221
Q ss_pred HHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH----hcccchhccHHHHHHHHHHHhcCCChhHH
Q 000051 2095 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK----NSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2612)
Q Consensus 2095 ~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~----~~~~~~~~~~~~il~~L~~ll~d~d~~V~ 2170 (2612)
++..+....+.+.+..++..+.+- ++++..-+..-+..+..+++ +.+. ..++.+.+.+-.++.|.|..-.
T Consensus 452 --i~~~f~~~~~~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~~---~~l~~l~~~~e~L~~~~dk~~q 525 (997)
T 1vsy_5 452 --VLKTAGHLLTREFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFCE---LNMSDLFELCESYYNKDDKASM 525 (997)
T ss_dssp --HHHHHHTTCCHHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTCC---CCGGGHHHHHHHTCCSSCHHHH
T ss_pred --HHHHHHhhcCHHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccch---hhHHHHHHHHHHHhccccHHHH
Confidence 223333334566677777776543 22222224445555555553 3333 2355666666667888898889
Q ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHh-cCCHHHHHHH
Q 000051 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI-SGSAELREQA 2249 (2612)
Q Consensus 2171 ~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~-~~~~~~r~~a 2249 (2612)
.++.+.++.++.....-..+. .. +...-+.|.+...+. +-+++....-
T Consensus 526 r~aaEi~aGll~gsK~w~~~~-~~------------------------------~~w~~l~p~l~~~l~~~lt~et~~~W 574 (997)
T 1vsy_5 526 IMSVEIVAGLVCGSKFMSVSD-LD------------------------------KRDTFIENFLAKCLDYELNHDAFEIW 574 (997)
T ss_dssp HHHHHHHHHHSSCCSSCCTTT-HH------------------------------HHHHHHHHHHHHHHSSCCCTTHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHH-HH------------------------------HHHHHHHHHHHHHHhccCCchhHHHH
Confidence 999999998876543211000 00 111225666667777 4577777777
Q ss_pred HHHHHHHHHhcChhhhhhchhhhhHHHHHHhc------CC--CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000051 2250 ALGLGELIEVTSEQSLKEFVIPITGPLIRIIG------DR--FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2612)
Q Consensus 2250 a~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~------~~--~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~ 2321 (2612)
..|+..+....++..+. ||+..+. +. .+.-....-+..|..++...+-.+.. ...+...++
T Consensus 575 ~~~i~~~~~~~DprR~~--------~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~-- 643 (997)
T 1vsy_5 575 STLAWWLPAVVDLRRSK--------TFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV-- 643 (997)
T ss_dssp HHHHHHHHHHSCGGGCH--------HHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--
T ss_pred HHHHHHHhcCCChhhhH--------HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--
Confidence 77788877776644443 3344331 11 01111222344555444444433333 444554444
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcc--C---ChhHH-------------------------HHHHHHhhhc---------CC
Q 000051 2322 LQDSTRTVRSSAALALGKLSALS--T---RVDPL-------------------------VGDLLSSLQV---------SD 2362 (2612)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~L~~~~--~---~~~~~-------------------------l~~Ll~~l~~---------~d 2362 (2612)
++++...||...+..|..+.... | +++.+ +..+.+.+.. +.
T Consensus 644 l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~ 723 (997)
T 1vsy_5 644 FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQ 723 (997)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCST
T ss_pred hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCcc
Confidence 78889999999999999885432 2 12212 2222222220 00
Q ss_pred ----HH---HHHHHHHHHHHHHHhcCCCcChHHHHH-HHHHHHHhhcCCCH-HHHHH-HHHHHHHHHhh-CChhHHHHHH
Q 000051 2363 ----AG---IREAILTALKGVLKHAGKSVSSAVKIR-VYSVLKDLVYHDDD-HVRVS-AASILGIMSQC-MEDGQLADLL 2431 (2612)
Q Consensus 2363 ----~~---vr~~~l~AL~~vi~~~g~~~~~~~~~~-i~~~L~~~l~~~~~-~vr~~-aa~~Lg~L~~~-~~~~~~~~~l 2431 (2612)
.. .-.+++.-|...+.........++.+. +++.|..+.+..++ +.... +..++..++.. .+++.+..++
T Consensus 724 ~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l 803 (997)
T 1vsy_5 724 QFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIV 803 (997)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00 011222222222211100001233333 44444444444444 55555 66778777544 4444455566
Q ss_pred HHHHhhcC-CCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhccCCC
Q 000051 2432 QELLNLAS-SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPA 2509 (2612)
Q Consensus 2432 ~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2612)
..+..... +++| .|.....-+..+.-.+-- ++...-...|.+.+.+.+.|.. .+||+.|..+++.++......
T Consensus 804 ~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f-~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~--- 878 (997)
T 1vsy_5 804 DYVCSSNVALSSN-QTKLQLAFIQHFLSAELL-QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE--- 878 (997)
T ss_dssp HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTT-TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH---
T ss_pred HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch---
Confidence 55544333 5789 776433333333322221 2233344678899999999999 999999999999988653110
Q ss_pred CchhhHHHHHHHHhhcCC------------CCHHHHHHHHHHHHHHHhhCchhh--hhhHhHHHHHHHhhhcCCcchhhh
Q 000051 2510 NTTVVVDILASVVSALHD------------DSSEVRRRALSALKSVAKANPSAI--MVHVALFGPALAECLKDGSTPVRL 2575 (2612)
Q Consensus 2510 ~~~~l~~~l~~~~~~l~~------------~~~~vr~~a~~~l~~~a~~~~~~v--~~~l~~l~p~l~~~~~~~~~~vk~ 2575 (2612)
....+++..|...... .+.-.|-.|+.+|+++.+..|..+ -++++.++..|-.-..+ ..||+.
T Consensus 879 --~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~-~~~i~~ 955 (997)
T 1vsy_5 879 --QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART-SGMTGN 955 (997)
T ss_dssp --HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS-CSSHHH
T ss_pred --hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC-CCchHH
Confidence 1233455555554422 111466788888999999999887 56888888777777777 567999
Q ss_pred hHHHHHHHHhcccccc
Q 000051 2576 AAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2576 aae~~~~~~~~~~~~~ 2591 (2612)
.+.+|+-..-+.+++.
T Consensus 956 tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 956 AAKNTISEFKKVRADT 971 (997)
T ss_dssp HTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhccchh
Confidence 9999999988877654
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.9e-07 Score=108.96 Aligned_cols=239 Identities=15% Similarity=0.206 Sum_probs=159.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc----c--ch-hhHHH-HHHHHHHHcCCC-----CHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGR----L--FE-PYVIQ-MLPLLLVAFSDQ-----VVAVREAAECAA 1444 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~----~--~~-~~v~~-ilp~ll~~l~D~-----~~~VR~aa~~al 1444 (2612)
++.+.|..-+-+. .|..|+||.+++..+....|. . .. ..... ++=..+..|+|- ..-||++|++++
T Consensus 174 qfcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 174 DFFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp GTTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 3666676667777 699999999999999987652 1 11 11222 222334556663 356999999999
Q ss_pred HHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHH
Q 000051 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2612)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2612)
+.+ ..+++. -.++-.++..+..+.|.+|++++..|..+ .+.+.. ++.+++.++..|+|.+.+||..|+.+|.
T Consensus 253 GaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLi 324 (800)
T 3oc3_A 253 SRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLC 324 (800)
T ss_dssp HHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence 999 888776 46666777777888999999999999877 222222 8999999999999999999999999999
Q ss_pred HHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000051 1525 QVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2612)
Q Consensus 1525 ~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~ 1604 (2612)
.++ ....+..++..+.+.+.+-++- .++-..++.. +..++
T Consensus 325 PIA---~p~~l~~LL~iLWd~L~~LDDL------------------SASTgSVMdL-------------------LAkL~ 364 (800)
T 3oc3_A 325 HFP---ITDSLDLVLEKCWKNIESEELI------------------SVSKTSNLSL-------------------LTKIY 364 (800)
T ss_dssp TSC---CSSTHHHHHHHHHHHHHTCCSC------------------CTTHHHHHHH-------------------HHHHH
T ss_pred hhc---chhhHHHHHHHHHHHhhhhccc------------------chhhHHHHHH-------------------HHHHH
Confidence 888 3356777888887776543220 1111122222 22222
Q ss_pred hccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHH
Q 000051 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676 (2612)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~ 1676 (2612)
..-.. .... +.++|.+...+.++...||.++.+++..+. ...++..+++.+--+....++.
T Consensus 365 s~p~~-a~~d---p~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~ 425 (800)
T 3oc3_A 365 RENPE-LSIP---PERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIRE 425 (800)
T ss_dssp HHCTT-CCCC---SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHH
T ss_pred cCCcc-cccC---hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHH
Confidence 21100 0011 267888888889999999999999887655 3345555555544444443443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=101.63 Aligned_cols=186 Identities=19% Similarity=0.157 Sum_probs=139.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-
Q 000051 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV- 1418 (2612)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v- 1418 (2612)
.+..|.++++...|..|+.+|..++.+... ..+...+.++.+.+.+.+. ++..|..|+.+++.++.+.+......+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 334444556678888888888888754221 1222336788888999887 799999999999998753332111111
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
...+|.++..+.++++.+|..|..++..+...-+... -...+|.+++.+.+++..++..++.+|+.++...+....
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 2478999999999999999999999999875332221 145789999999999999999999999999986554432
Q ss_pred hh-hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
.. -...++.+.+++.+.+++||..|+.+|..+++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 24688999999999999999999999998864
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00015 Score=76.36 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=137.8
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 000051 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1923 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~ 1923 (2612)
+++..+...++|.-|.|+..|+.++..+.+..|....+.+..++-.+- ++..-..-+...+++|.+++. .+.....
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i-~Pe~v~~ 107 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKS 107 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHH-CHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHh-CHHHHHh
Confidence 466666777899999999999999999999888766655555443321 244444556667788877654 3445566
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhh
Q 000051 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003 (2612)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ 2003 (2612)
++|.+..-++-.++..|.+..++|++++... |. .++.++..+..++.++|..-|-.|...++.
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaran-P~----l~~~v~rdi~smltskd~~Dkl~aLnFi~a------------ 170 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKAN-PM----LMASIVRDFMSMLSSKNREDKLTALNFIEA------------ 170 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHT------------
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhC-hH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHH------------
Confidence 7788877777678999999999999886532 22 234455555556666664444444333322
Q ss_pred hHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhc
Q 000051 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 2083 (2612)
Q Consensus 2004 ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L 2083 (2612)
.|..-.+|....+|.|+..|
T Consensus 171 ------------------------------------------------------------lGen~~~yv~PfLprL~aLL 190 (253)
T 2db0_A 171 ------------------------------------------------------------MGENSFKYVNPFLPRIINLL 190 (253)
T ss_dssp ------------------------------------------------------------CCTTTHHHHGGGHHHHHGGG
T ss_pred ------------------------------------------------------------HhccCccccCcchHHHHHHH
Confidence 23333455555666666667
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000051 2084 GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2612)
Q Consensus 2084 ~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~ 2140 (2612)
.|.++-||.++.+++..+... .+.++.++...++.++|.+..+......+++.+.
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 777777777777777666542 2336666666666676666666666666665553
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-05 Score=94.46 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=143.4
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCC
Q 000051 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2612)
Q Consensus 1778 p~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~ 1857 (2612)
+.+...+++.+|+.|..+++.+.+.+...+ ..+... .+-++..+...+.|.+
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-----------------------~~~~~~-----lDll~kw~~lr~~d~N 100 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-----------------------RSLLSN-----SDLLLKWCTLRFFETN 100 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-----------------------HHHHHT-----HHHHHHHHHHHTTSCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------HHHHHH-----HHHHHHHHHHHHhCCC
Confidence 456677889999999999988877653210 111111 1223443333457999
Q ss_pred HHHHHHHHHHHHHHHhcChh---hHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC
Q 000051 1858 LSVRQAALHVWKTIVANTPK---TLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2612)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~---~l~~~-l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2612)
..|-..+++++..++....+ .+.++ ...++|.++..++++...+|..+...+..+....++ ..+.+.+.+++.
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~k 177 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHc
Confidence 99999999999998764432 13333 577899999999999999999999999887765443 356777788999
Q ss_pred CCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI---PTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll---~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
++++.+|.+++..++.++..+|... ...+ +.+.+.+.|+|..||++|..++..++...|....
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999888652 2345 8889999999999999999999999999987544
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.5e-06 Score=102.20 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=137.0
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHhhCchh-----hhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-----
Q 000051 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2612)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-----l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2612)
+-+.|.+++|..|..|++-|..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999998877654332 2223556667777889999999999999999999876542
Q ss_pred ----hhHhhHHHHHHhh-cCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1533 ----~~i~~ivp~Ll~~-l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
..+..++|.++.. +.|+...++ .+++.+.. ++.... ....+++.+..++.+.++.+|..+..++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~--~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILS--LCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH--HHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH--HHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 1346678888764 788887776 34544432 111111 2234677888899999999999999999998876
Q ss_pred cCCC-CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1607 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1607 ~~~~-~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
++.. -...+.++.+++.+..++.|.++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 6542 1245567788888999999999999999999999999999864
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.3e-06 Score=102.69 Aligned_cols=211 Identities=16% Similarity=0.156 Sum_probs=157.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-------hHHHHHHHHHHhhcC-------C--ChHHHHHHHHHHHH
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-------APTLVSRLLDQLMKS-------D--KYGERRGAAFGLAG 1364 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-------~~~li~~ll~~L~~~-------~--~~~~R~~Aa~~L~~ 1364 (2612)
+.+.|..-|-+++.++|..|+-+|..+++..+.. ..++.-.++..+.-+ + -..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 8899999999999999999999999998876421 124444555554421 1 13789999999999
Q ss_pred HHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000051 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2612)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2612)
+ ..++.. ..++..+...+... .|.+|++++.++.++ .+.+.. +..++|.++.+++|.+++||..|+.++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777765 25555555555555 799999999999998 222222 788999999999999999999999998
Q ss_pred HHHHHhhcHHhHHhHHHHHHhhhcC-CCh-hhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHH
Q 000051 1445 RAMMSQLSAQGVKLVLPSLLKGLED-KAW-RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2612)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w-~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~a 1522 (2612)
.-++ .+..+..++..+.+.|.+ ++- ......+.+|..++...+. ....+.++|.|...+.++-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 7776 445677777777777654 222 2333445677777765442 22346899999999999999999999999
Q ss_pred HHHHH
Q 000051 1523 LQQVG 1527 (2612)
Q Consensus 1523 L~~l~ 1527 (2612)
+..+.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 87665
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.9e-05 Score=92.68 Aligned_cols=135 Identities=18% Similarity=0.157 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhHHHHHHhhh
Q 000051 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGL 1467 (2612)
Q Consensus 1394 ~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L 1467 (2612)
..|..|+..|..+++.... -..++ ...+|.++. ++.++++.||..|+.+++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 5677788877777764331 11112 256889999 999999999999999999998654332 12 35789999988
Q ss_pred cC-CChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1468 ~~-~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.+ .+...|..|+.+|+.++.+.+....... ...+|.|..+|++.++.||..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 85 4678899999999999987665443332 36889999999999999999999999999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00017 Score=80.05 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=161.9
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000051 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2612)
Q Consensus 1736 ~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~----~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~ 1811 (2612)
+..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.|+-..|+++++.++...+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp---- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP---- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC----
Confidence 346677888889999999999999999999874 334677899999999999999999999999999984321
Q ss_pred cccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 000051 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2612)
Q Consensus 1812 ~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~ 1891 (2612)
++++.+..+..++.....+.+...+..|.+.++.+-.. ...+.+...+.
T Consensus 108 -------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~ 156 (265)
T 3b2a_A 108 -------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL------EDSKLVRTYIN 156 (265)
T ss_dssp -------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHH
T ss_pred -------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cchHHHHHHHH
Confidence 12233445555665566788899999999999988221 23466777788
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHH
Q 000051 1892 SSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2612)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l 1970 (2612)
..+.+++..++.+|.+++.++....++. .+..++.-+...++++|+.++.-+...+-+++..--.+...+-+..+...+
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v 236 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIV 236 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHH
Confidence 8889999999999999999998877654 567777777778888999999999999988765422222223333333333
Q ss_pred HHHh-cCCcHHHHHHHHHHH
Q 000051 1971 RTAL-CDSILEVRESAGLAF 1989 (2612)
Q Consensus 1971 ~~~L-~D~d~~Vr~~A~~al 1989 (2612)
.... -...|.+|..|...-
T Consensus 237 ~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 237 DGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHH
Confidence 3333 356778888775443
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.12 E-value=7.7e-05 Score=93.59 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhHHHHH
Q 000051 1392 SAKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSL 1463 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~~~~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~L 1463 (2612)
++..|..|..++..++.+-.. ....+ ...+|.++..+..+++.+++.|..++..+...-.+ ..+ ...+|.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 356788888888888743221 12222 35799999999999999999999999999753111 122 3468889
Q ss_pred Hhhh-cCCChhhHHHHHHHHHHHHhhCchh-hhhh-hchhHHHHhhhhcCCCH----HHHHHHHHHHHHHHhhc-CChhH
Q 000051 1464 LKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVI-KNPEI 1535 (2612)
Q Consensus 1464 l~~L-~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~-L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~-~~~~i 1535 (2612)
++.| .+.+...+..++.+|..++...++. ..-. -...+|.|.+++.+.++ +|++.|+.+|..++..+ .+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9874 5677888999999999999854332 1111 35788999999987654 59999999999998532 11211
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh
Q 000051 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2612)
.. .+.. ...+|.|...+.+.+.+++..|+.+|.+++.. +++....
T Consensus 256 ~~---------------------~i~~------------~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~--~~~~~~~ 300 (354)
T 3nmw_A 256 RQ---------------------ILRE------------NNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR--NPKDQEA 300 (354)
T ss_dssp HH---------------------HHHT------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHH
T ss_pred HH---------------------HHHH------------cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC--CHHHHHH
Confidence 10 0000 12467777777778888999999999998742 2212111
Q ss_pred hH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1616 YI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1616 ~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
.. ...+|.|.+++.++++.+|+.|+.+|..++..-+..
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 11 357899999999999999999999999999864443
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.08 E-value=7.3e-05 Score=93.75 Aligned_cols=218 Identities=15% Similarity=0.101 Sum_probs=156.2
Q ss_pred CHHHHHHHHhhhHHhHhhhcc---hh---HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHH
Q 000051 1313 SEAVQRAVSSCLSPLMQSMQD---EA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 1383 (2612)
Q Consensus 1313 ~~~Vq~~~~~~L~~lv~~~~~---~~---~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L 1383 (2612)
++++|..++.+|..+.....+ .. ...++.++..|.. ++...+..|+.+|..++.+-. ...+.....++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 467899999999887633211 11 3457788877654 456889999999999986411 1223334677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHh--hcHHh
Q 000051 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQ--LSAQG 1455 (2612)
Q Consensus 1384 ~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v--~~ilp~ll~~l~D~~~----~VR~aa~~al~~i~~~--l~~~~ 1455 (2612)
.+.+....+...++.|+.++..++......-...+ ...+|.+...+.+.++ .+++.|..++..+... -.+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88653333688888999999999863322112222 3689999999986654 4888888888888752 12222
Q ss_pred ---H--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
+ ...+|.|++.|.+.+...+..|+.+|..++...+++..... ...+|.|.+++.+.++++|+.|+.+|..+...
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 34689999999999999999999999999876665433222 46789999999999999999999999999976
Q ss_pred cC
Q 000051 1530 IK 1531 (2612)
Q Consensus 1530 ~~ 1531 (2612)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 43
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.9e-05 Score=92.69 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHhhhCcc-hhhhhcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHH
Q 000051 1353 GERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2612)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg~~-~l~~~~i~~~L~~-~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~ 1428 (2612)
..|..|...|..++...... .+.....++.+.. .+.+. ++.+|+.|+.+++.++..-+. ....+. ..+|.++.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 34555666666666533211 1112245566666 77776 799999999999999865432 222332 588999999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHH
Q 000051 1429 FS-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2612)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp 1502 (2612)
+. ++++.+|+.|..++..+....++. .+ ...+|.|+..|.+.+..++..++.+|+.++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 97 568999999999999987654332 22 35789999999999999999999999999988665433322 46889
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.|+.+|.++++.||..|..+|+.+...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0013 Score=73.19 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=157.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--hcHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ--LSAQ 1454 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~-~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~--l~~~ 1454 (2612)
+.+..+...+.++ |..++..++++++.+....++.+. ..+..++|.++..+.+++..|--.|..|++.+... +++.
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4566677777766 899999999999999998765443 45778999999999999999999999999999885 5677
Q ss_pred hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChh
Q 000051 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2612)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2612)
++..+...+.+-+.+++--.+..+.+.+|.+ ......+.++..+..++...+++|+.+|..++..++..-.+++
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 8888888888888888877888888888887 1122246777888888888899999999999999987665543
Q ss_pred H-hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcc
Q 000051 1535 I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2612)
Q Consensus 1535 i-~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2612)
+ ..++..+-..+ +..++.++..|.+.+..+.+. .-++++
T Consensus 186 i~~~I~~eI~elL---------------------------------------~~eD~~l~e~aLd~Le~ils~-pi~~~~ 225 (265)
T 3b2a_A 186 HLTLILDEIPSLL---------------------------------------QNDNEFIVELALDVLEKALSF-PLLENV 225 (265)
T ss_dssp CGGGTTTTHHHHH---------------------------------------TCSCHHHHHHHHHHHHHHTTS-CCCSCC
T ss_pred HHHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHHcC-cccHhH
Confidence 2 44443333333 333456666666666666553 222444
Q ss_pred hhhHhhhHHHHHHHh-cCCCHHHHHHHHHH
Q 000051 1614 IPYIGLLLPEVKKVL-VDPIPEVRSVAARA 1642 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L-~d~~~~VR~~A~~a 1642 (2612)
.+-+-.+......+. ....|.+|..|-..
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 444444555555554 45667777776543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.5e-05 Score=94.17 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHh
Q 000051 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2612)
Q Consensus 1883 l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2612)
...++..+++.+.+++...|....-.+..+... .+.++ -+...+.+-++++++-+|..++.+++.+.. .+.
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-------~~m 136 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-------STM 136 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------TTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-------HHH
Confidence 345677788899999999999998888776655 44454 677888888899999999999999998732 234
Q ss_pred HhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCc--chHHHHHHHHHhhhccccccccc
Q 000051 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHI 2040 (2612)
Q Consensus 1963 l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~vlp~L 2040 (2612)
++.+.+.+.+++.|.++-||..|+-+...++.. .++.+..+++.+-+.+.+.+. ...++..+.++... ....+..+
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kL 214 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKM 214 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHH
Confidence 577888899999999999999999988887653 344556677777777766542 24566666666532 22344556
Q ss_pred chhhccCCc-chh-HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHH
Q 000051 2041 LPKLVHLPL-SAF-NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2612)
Q Consensus 2041 ip~L~~~~~-~~~-~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll 2118 (2612)
++.+....+ +.+ ....+..++.....+-...-..+++.+...++..++.|.-.+..++-.+-. .+...+......+.
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~ 293 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQ 293 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHH
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHH
Confidence 666655433 122 222333222221111112235566777777888888887776666644322 22222333344555
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000051 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2612)
Q Consensus 2119 ~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL 2177 (2612)
..+.++++.+|..|+..+..+....+..+..+ -..+..++.|+|..+..-|..+|
T Consensus 294 ~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 294 LFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 55667889999999999999887665444433 34466778899988877665544
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0011 Score=81.72 Aligned_cols=269 Identities=12% Similarity=0.111 Sum_probs=145.2
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 000051 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2612)
Q Consensus 1346 L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~l 1425 (2612)
+..+++...|+-....+..+.+. ....+ -+.+.+.+-++++ |+-.|-.|+.+++.+. . ...+..+.+.+
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~-~~e~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~---~---~~m~~~l~~~l 144 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCI-AEDVI---IVTSSLTKDMTGK-EDSYRGPAVRALCQIT---D---STMLQAIERYM 144 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTT-SSCGG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHC---C---TTTHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCC-HHHHH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCC---C---HHHHHHHHHHH
Confidence 44567788899888888877765 33333 4678888888887 7899988887666653 2 24566788889
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHh
Q 000051 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2612)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~ 1505 (2612)
-+++.|.++.||++|.-+.-.+... .++.++.+++.+-+.+.+.+..+...|+.+|..+....+. .+..+++.+.
T Consensus 145 k~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~----a~~kLv~~l~ 219 (355)
T 3tjz_B 145 KQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL----AVSKMISKFT 219 (355)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH----HHHHHHHHHh
Confidence 9999999999999998887777644 4556788889888899999988888888888888765432 2334444433
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCC--h-hHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHH
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN--P-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~--~-~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L 1581 (2612)
+. .-.++-.+-.- +..+.....+ + .-..+++.+...+...+..+- +|+.++... .+ .....+...+..+
T Consensus 220 ~~-~l~~~~~q~~l---lr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l--~~-~~~~~~~~a~~~L 292 (355)
T 3tjz_B 220 RH-GLKSPFAYCMM---IRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL--PG-CSAKELAPAVSVL 292 (355)
T ss_dssp SS-CCSCHHHHHHH---HHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------CCCTH
T ss_pred cC-CCcChHHHHHH---HHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--cC-CCHHHHHHHHHHH
Confidence 21 11133333332 3333333222 2 236778888888887777766 777777642 11 1222233345556
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000051 1582 HRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2612)
Q Consensus 1582 ~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2612)
...+.++++++|..|...+..+... .|+.+.. .-..+..++.|++..++..|+..|
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~--~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMK--HPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHH--CcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 6677778889999998888777663 3333333 344556777888877776666554
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.21 Score=65.30 Aligned_cols=323 Identities=16% Similarity=0.140 Sum_probs=188.7
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcc-
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGR- 1412 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~-~~~~~R~~Al~al~~L~~~~~~- 1412 (2612)
..+.|+.+.+.+.++.-...||.|..+|..+++........ .-++.+...++++ .|...-..++..+..+...-+.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 46788888888888877889999999999998765543322 2244444455432 3554444555555443321110
Q ss_pred ---------------cchhhH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H---HhHHHHHHhhhc
Q 000051 1413 ---------------LFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V---KLVLPSLLKGLE 1468 (2612)
Q Consensus 1413 ---------------~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v---~~ilp~Ll~~L~ 1468 (2612)
.+...+ .+-++.++.++...+-.+|-.+.+.+..+...-+... + ..-+|.|++.|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 011111 1468889999999999999999999999987654432 2 245788999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCchh-hhhhhchhHHHHhhhhcCCCH----HHHHHHHHHHHHHHhhcC-Ch-hH--hhHH
Q 000051 1469 DKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-NP-EI--ASLV 1539 (2612)
Q Consensus 1469 ~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~~-~~-~i--~~iv 1539 (2612)
++.--.|..++.+|..++.+.++. -.-.+...++.++.++..... .|..-|...+..+.+.-. |. .+ ...+
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 988889999999999999876652 222356778888888765443 677778888888876521 11 22 2345
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhH--HHHHHHhhcCCCHHH-HHHHHHHHHHHhhccCCCCcchhh
Q 000051 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL--VPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1540 p~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~i--ip~L~~~l~d~s~~v-r~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
|.|...+..+.+.. +. .+.....+ +-.+.+.+-.++... ..... -..+++
T Consensus 257 ~~L~~LL~~~~~~~-----------~W---~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~n--Q~~~~~----------- 309 (651)
T 3grl_A 257 QRMKPWFEVGDENS-----------GW---SAQKVTNLHLMLQLVRVLVSPNNPPGATSSC--QKAMFQ----------- 309 (651)
T ss_dssp GGGGGGGCCCSCSS-----------CC---CHHHHHHHHHHHHHHHHHTCTTSCHHHHHHH--HHHHHH-----------
T ss_pred HHHHHHhCCCcccc-----------cc---HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHH-----------
Confidence 55555543221100 00 00000000 001111111111000 00000 011111
Q ss_pred HhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCC--C-----------CchhhHHHHHHHhccCCCHHHHHHHHHH
Q 000051 1617 IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGE--E-----------NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~~g~--~-----------~~~~ll~~L~~~L~~~~~~~~R~~aa~~ 1681 (2612)
..+++.+.+++..+ ...+|..|..+++.++..... + ..+.++..++..+.+......|..++.+
T Consensus 310 -~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~c 388 (651)
T 3grl_A 310 -CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYC 388 (651)
T ss_dssp -TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHH
Confidence 22555566665543 578999999999998874321 1 1234555555556555667788888888
Q ss_pred HHHHHH
Q 000051 1682 LSEVLA 1687 (2612)
Q Consensus 1682 L~~i~~ 1687 (2612)
+...+.
T Consensus 389 l~ay~~ 394 (651)
T 3grl_A 389 FQCFLY 394 (651)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776653
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.069 Score=69.72 Aligned_cols=338 Identities=16% Similarity=0.137 Sum_probs=155.9
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhChhhHHHhH
Q 000051 1887 MNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2612)
Q Consensus 1887 l~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2612)
++.+..++. +.-.+.|..|...|..+.+.....+-..-+|.+...|++ .|.++-..++..|..++.....+...
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~--- 99 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE--- 99 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc---
Confidence 344444454 556788999999999988776555544445555555543 45666666666665554322111000
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCc--chHHHHHHHHHhhhcccccccccc
Q 000051 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHIL 2041 (2612)
Q Consensus 1964 ~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~vlp~Li 2041 (2612)
. . ......+.+..--+.+.. -.+-++.|++.|++++. +-+++..|..++..+...+
T Consensus 100 -~--------~--~~~~~~~~~~~~~d~f~~------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~----- 157 (651)
T 3grl_A 100 -E--------N--STRQSEDLGSQFTEIFIK------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQV----- 157 (651)
T ss_dssp -------------------CHHHHHHHHHHH------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHH-----
T ss_pred -c--------c--ccccchHHHHHHHHHHHc------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 0 0 000000001110111111 12345666666654432 2334444444442221100
Q ss_pred hhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-c---cHHHHHHHH
Q 000051 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-E---GVESLVSEL 2117 (2612)
Q Consensus 2042 p~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~---~l~~ll~~L 2117 (2612)
=.++.. -+.-++.|++.|.|..+.+|..++..+..+...-.+ . .+...++.|
T Consensus 158 ---------------Q~~Il~---------~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~L 213 (651)
T 3grl_A 158 ---------------QQIILV---------SPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERL 213 (651)
T ss_dssp ---------------HHHHHH---------STTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred ---------------HHHHHh---------CcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHH
Confidence 000000 124567777778777788888777777766653221 0 012223344
Q ss_pred HhhcCCCC----hhHHHHHHHHHHHHHHhcccchhccHH--HHHHHHHHHhcCCC------hhHHHHHHHHHHHHHhhcC
Q 000051 2118 LKGVGDNQ----ASIRRSSAYLIGYFYKNSKLYLVDEAP--NMISTLIVLLSDSD------STTVAAAWEALSRVVASVP 2185 (2612)
Q Consensus 2118 l~~l~~~~----~~vR~~A~~~L~~l~~~~~~~~~~~~~--~il~~L~~ll~d~d------~~V~~~a~~aL~~l~~~~~ 2185 (2612)
...++.+. ..+-.-++.++..+.+..+.. ..++. ..++.|..+++..+ +....+.+.++.-+---..
T Consensus 214 f~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~ 292 (651)
T 3grl_A 214 LDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS 292 (651)
T ss_dssp HHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence 44443322 245556666777776543210 01111 12334445554222 1233332222222111111
Q ss_pred ccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhcChh
Q 000051 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQ 2263 (2612)
Q Consensus 2186 ~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~--~~~~r~~aa~~L~~li~~~~~~ 2263 (2612)
+..-..-.+.-+..+. -..+++.+++-+... ...++..|..++++++...+
T Consensus 293 ~~~~~~~t~~nQ~~~~-------------------------~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-- 345 (651)
T 3grl_A 293 PNNPPGATSSCQKAMF-------------------------QCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ-- 345 (651)
T ss_dssp TTSCHHHHHHHHHHHH-------------------------HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--
T ss_pred CCCCCCCCHHHHHHHH-------------------------HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--
Confidence 1000000000000000 011455566655544 67788999999999986543
Q ss_pred hhhhch-----------hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000051 2264 SLKEFV-----------IPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2264 ~l~p~v-----------~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2612)
..+.++ +.++..|+..+.+....++|.+++.++..++.
T Consensus 346 ~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 346 VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 222222 22333355556677788999999999987663
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.24 E-value=5.5e-05 Score=80.68 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhc
Q 000051 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2612)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~ 1498 (2612)
..-++.+...+.|+++.+|..|..++..+.. . . +|.|++.|.+++|.+|..++.+|+.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 3456777888899999999888777654421 1 1 4788888889999999999999887642 3
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH
Q 000051 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r 1554 (2612)
..++.|...++|+++.||..|+++|+.++. ...+|.|.+.+.|++..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHH
Confidence 457778888899999999999999998863 2456677777777766665
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.65 Score=63.81 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=59.4
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhH-HHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChh--
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-- 1534 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-- 1534 (2612)
.++| +++.|++.+...|..||.+|..++......-.-.-.+++ +.+..++.|++.+||.+|..+|++++..-+...
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 556788888999999999999988642221111123454 456678999999999999999999986543211
Q ss_pred -H--hhHHHHHHhhc
Q 000051 1535 -I--ASLVPTLLMGL 1546 (2612)
Q Consensus 1535 -i--~~ivp~Ll~~l 1546 (2612)
+ ..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 1 34666666554
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.15 E-value=5.9e-05 Score=88.48 Aligned_cols=186 Identities=19% Similarity=0.179 Sum_probs=109.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 000051 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 1423 (2612)
Q Consensus 1344 ~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp 1423 (2612)
..+..++++.+|+.++..+ +.. .+...++|+ ++.+|..+... ++. +
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~-------L~~----------~ 101 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYR-------LPR----------E 101 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTT-------SCS----------G
T ss_pred HHHhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHH-------CCH----------H
Confidence 3344556677888777743 211 134455666 78888777653 221 2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHH
Q 000051 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2612)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~ 1503 (2612)
.+...++|+++.||..+...+ +. +.+...+.+++|.+|..+..-+ + + +.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l-------~~-------~~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~ 150 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------P-------P---GR 150 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------C-------G---GG
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHHhc-------C-------H---HH
Confidence 345567888888888765532 21 1233345677888887776521 1 1 12
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHH
Q 000051 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~ 1582 (2612)
+..+++|+++.||..+...+ . .+.+...+.|+++.+|. +...+ . .+.+.
T Consensus 151 l~~l~~D~d~~VR~~aa~~l-------~-------~~ll~~ll~D~d~~VR~aaa~~l---------~-------~~~L~ 200 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRL-------P-------EESLGLMTQDPEPEVRRIVASRL---------R-------GDDLL 200 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------C-------GGGGGGSTTCSSHHHHHHHHHHC---------C-------GGGGG
T ss_pred HHHHHcCCCHHHHHHHHHcC-------C-------HHHHHHHHcCCCHHHHHHHHHhC---------C-------HHHHH
Confidence 44567888888888887751 1 12344566788887773 33321 1 13345
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2612)
..+.|++|.||..+...++ .+.+..+ .|+++.||..+...||
T Consensus 201 ~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 201 ELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 5677888888887766532 1334444 7888888888877655
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.014 Score=66.15 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2345 ~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
+.+..|+..|.+.+..-+.+.+. +.++-.++....+ .+.+..+...+..++.+.+|..|+.+||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~-~~~~a~~~~~~~~-------~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKE-EEQRALTDYKSND-------GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CH-HHHHHHHHHHHSC-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhCC-------HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 45677888887776543222221 2223333333321 466777777888888899999999999988 3 33
Q ss_pred hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHh-hCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhh
Q 000051 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503 (2612)
Q Consensus 2425 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~ 2503 (2612)
...-++++.. -..++.|.++.-+..++...+. ..|+. .++.+.....++++.+|+.|+...-.. +
T Consensus 102 ~~~L~~ir~~--va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW---~ 167 (240)
T 3l9t_A 102 KEILIFMRDE--VSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIW---T 167 (240)
T ss_dssp HHHHHHHHHT--GGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSG---G
T ss_pred HHHHHHHHHH--hCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHH---h
Confidence 3444444432 2357889888888888888876 66653 245666778899999999998876431 1
Q ss_pred hccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH
Q 000051 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2612)
Q Consensus 2504 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2612)
. . |.....+..+++.+-...+|++.-||+...+.|+.+++.+|+.|+.++..
T Consensus 168 ~-~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 168 N-R-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp G-S-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred c-c-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 1 1 11123455666666667789999999999999999999999999887763
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00019 Score=84.18 Aligned_cols=185 Identities=17% Similarity=0.088 Sum_probs=122.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHh
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~~~ 1584 (2612)
.+++|+++.||..+...+. ...+...+.|++..+|. +...+ .. +.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------------~~~l~~L~~D~~~~VR~~aA~~L---------~~-------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------------VEALTPLIRDSDEVVRRAVAYRL---------PR-------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------------GGGGGGGTTCSSHHHHHHHHTTS---------CS-------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------------HHHHHHHccCcCHHHHHHHHHHC---------CH-------HHHHHH
Confidence 4579999999999988541 12355667899999984 33221 11 245667
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH
Q 000051 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2612)
Q Consensus 1585 l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~ 1664 (2612)
++|+++.||..++..+ .. +.+..++.|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~l-------~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL------------EQLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT------------GGGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHhC-------CH------------HHHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 8899999999887732 11 1234557899999999998742 221 223
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHh
Q 000051 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2612)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~ 1744 (2612)
.+.++.+..+|..++.. .+.. .+...+.++++.||..+...+ + .+.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------R----------GDDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHH
Confidence 44456677788877664 2322 233456889999998887642 1 135666
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHH
Q 000051 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2612)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~ 1800 (2612)
.+.|++..||..+...+. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 788999999999877643 2444445 8999999998765443
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00078 Score=71.64 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2612)
.-.+.+...++++ ++.+|..|+.+++.+ +. + -++.++..+.|+++.||..|..++..+. -.
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~-------~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E----AFEPLLESLSNEDWRIRGAAAWIIGNFQ-------DE 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T----THHHHHHGGGCSCHHHHHHHHHHHGGGC-------SH
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h----HHHHHHHHHcCCCHHHHHHHHHHHHhcC-------CH
Confidence 3456677777776 788888887766543 21 1 1478888999999999999998887663 24
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2612)
..+|.|+..+.+++|.+|..++.+|+.+.. +..++.|.+.++|+++.||..|..+|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 567888888899999999999999998752 3567888889999999999999999864
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.64 Score=58.00 Aligned_cols=297 Identities=11% Similarity=0.094 Sum_probs=186.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
.|+...++.|+.-|....+..+ + ....-+..++.+..|. +..+|..|+..|..++.. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-~----l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-E----LADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-G----GHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-h----hHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4678899999999999887765 2 2233344556777775 788999999988887743 57899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCC-cChHHHHHHHHHHHH
Q 000051 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS-VSSAVKIRVYSVLKD 2398 (2612)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~-~~~~~~~~i~~~L~~ 2398 (2612)
+.|+..+..-+...-.+|-.+...+| ...+..+...+..++..+|+.+++.|.+-+...+.. +..+.-.-|...+.+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888889999999998877554 345677777777778999999999999888877654 455666777788888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhCChhH---HHHHHHHHHhh---cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQ---LADLLQELLNL---ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---~~~~l~~ll~~---~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
.+.|-...--.....+|+.+-..-.... +.+++.+.... ....+.......+.++..++......+-...+..-
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 8888766655667777766544333222 33333332111 12223333334555666665443333322333333
Q ss_pred HHHHHHhhhccCC-----hhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCH-----------------
Q 000051 2473 ILDRLKSSLKDEK-----FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS----------------- 2530 (2612)
Q Consensus 2473 i~~~l~~~~~~~~-----~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~----------------- 2530 (2612)
+..-+...+..=. +..+-.-+.++..+..+++..+. ....+..+...|..-+.-...
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~-a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEK-LETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTT-HHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccch-HHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 3333333333211 12566677777777777653211 112233333344432221111
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000051 2531 EVRRRALSALKSVAKANPSAI 2551 (2612)
Q Consensus 2531 ~vr~~a~~~l~~~a~~~~~~v 2551 (2612)
.--..-+.++.+++++.|+..
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 112667888999999988765
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.022 Score=66.29 Aligned_cols=205 Identities=15% Similarity=0.045 Sum_probs=123.6
Q ss_pred HHHHHHHHcCCCCH--HHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1421 MLPLLLVAFSDQVV--AVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~--~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
.+|.++..+..+++ .++..|..++..+...-++. .+ ...+|.|++.|.+++...+..|+.+|..++...++.-.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46778888876666 88877777887766433222 22 34689999999999999999999999999986554311
Q ss_pred h-hhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChh--HhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC
Q 000051 1495 Q-CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPE--IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2612)
Q Consensus 1495 ~-~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~--i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~ 1570 (2612)
. .-...+|.|+++|.+ .+.++++.|..+|-.++..-.++. .+.-+|.|.+.+..|.. ...+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~s---------------G~~~ 153 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFS---------------GWPE 153 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHH---------------CCCG
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhcccc---------------CCcc
Confidence 1 124678999999974 689999999999999986433221 12334444443221100 0000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC-CCcchhhHhhhHHHHHHHhc------CCCHHHHHHHHHHH
Q 000051 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAI 1643 (2612)
Q Consensus 1571 ~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~VR~~A~~aL 1643 (2612)
... .+.....+.+++..|..+|.+++..-.+ .+.+..+ +.+++.|..++. +.+...++.|..+|
T Consensus 154 ~~~--------~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L 224 (233)
T 3tt9_A 154 GDY--------PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224 (233)
T ss_dssp GGC--------CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccc--------ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhcccchhHHHHHHHHHH
Confidence 000 0000113568888899999988763101 1112211 234444444443 23557778888887
Q ss_pred HHHHhh
Q 000051 1644 GSLIRG 1649 (2612)
Q Consensus 1644 ~~L~~~ 1649 (2612)
..|...
T Consensus 225 ~nLs~~ 230 (233)
T 3tt9_A 225 HNLSYQ 230 (233)
T ss_dssp HHHCCC
T ss_pred HHHHhh
Confidence 776543
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.052 Score=61.61 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=109.9
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHh
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2612)
.+.+++....+.+++..+||..|+..||.+ . ...++++.+...+..+....+|..++..+++++...+.+ .
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 456788888888999999999999988876 2 247788888776777888889988889999988766665 3
Q ss_pred HhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000051 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1697 llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~ 1769 (2612)
.++.+...+.+++..+|..+.....-.+.. ..|......++|.+-....|++.+||.+...+++.+.+..+
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 566777888999999999888765433322 23445556688888889999999999999999888665443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.11 Score=60.23 Aligned_cols=185 Identities=13% Similarity=0.071 Sum_probs=115.3
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHhccCC-h-----hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcCh
Q 000051 2315 QTTFIKCLQDSTR--TVRSSAALALGKLSALSTR-V-----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSS 2386 (2612)
Q Consensus 2315 ~~~~~k~L~d~~~--~vR~~Aa~aLg~L~~~~~~-~-----~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~ 2386 (2612)
++.+++.|+.+++ .++..|+.++..+....+. - ...+|.|+..+++++..+|+.+..||..+......+-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566778887766 8999999999988643221 1 134799999999888999999999999996531111000
Q ss_pred HHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhCChhH--HHHHHHHHHhhcC----------------CCCchhhH
Q 000051 2387 AVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCMEDGQ--LADLLQELLNLAS----------------SPSWAARH 2447 (2612)
Q Consensus 2387 ~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~~~~~--~~~~l~~ll~~~~----------------~~~~~~~~ 2447 (2612)
-.....++.|.+++. +.+..++..++.+|..|+....... ...-++.+...+. ..+..++.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 111223555666775 4688999999999999986433211 1112222221110 12334566
Q ss_pred HHHHHHHHHHhhC---CccccC-CchhHHHHHHHHhhhccC--ChhHHHhHHHHHHHH
Q 000051 2448 GSVLVFATFLRHN---PSAISM-SPLFLSILDRLKSSLKDE--KFPLREASTKALGRL 2499 (2612)
Q Consensus 2448 ~~~~~l~~~l~~~---p~~~~~-~~~~~~i~~~l~~~~~~~--~~~ir~~a~~alg~l 2499 (2612)
.+..+|..+.... ...+-+ .+..+.++.++.....+. +...++++++++..+
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 6777777775432 222322 345677777777765543 346788999988876
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=94.67 E-value=5.1 Score=50.15 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
...+.-++|-|......+.. .-++.+..++..|.+.+..+|..++..+..+|.. .++.++...+.+.|.-++.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccch
Confidence 44566667766666655432 2345667788888999999998776666665543 4678888888888887777
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000051 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~ 1806 (2612)
.-+...-.++..+++.-+...+..++..+..+ +..+|..++..+..-++.+
T Consensus 115 ~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~----~e~~Rer~lkFi~~kl~~l 165 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDAKGTLGGLFSQILQG----EDIVRERAIKFLSTKLKTL 165 (507)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHccc----chHHHHHHHHHHHHHHhhc
Confidence 76777777777777665555555566666653 3578888888877766543
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=3.7 Score=50.83 Aligned_cols=232 Identities=12% Similarity=0.094 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCch
Q 000051 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWA 2444 (2612)
Q Consensus 2365 vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~ 2444 (2612)
.|-..|.-..+++-+-.. ...+.+++.+.+...+++..+|.-+++.|+..+....+ .+...+..+...+.+.+..
T Consensus 41 ~Kl~~L~q~~EL~l~~dp----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-l~~~~l~~L~~LL~d~d~~ 115 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-LLLKLIANLNMLLRDENVN 115 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHH
Confidence 455555556665433222 23344444444555566666777777776666654332 2223333222222234444
Q ss_pred hhHHHHHHHHHHHh-------hCCcc-ccCCchhHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhcc--CC---
Q 000051 2445 ARHGSVLVFATFLR-------HNPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GP--- 2508 (2612)
Q Consensus 2445 ~~~~~~~~l~~~l~-------~~p~~-~~~~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~~--- 2508 (2612)
+...++.+...+.+ .+|.. ......|+. +-..+...+.+++..+|-.++.-+-.++..+... ++
T Consensus 116 V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p 195 (386)
T 3o2t_A 116 VVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIP 195 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccc
Confidence 44444544443331 11110 000123333 3455666677888999999998888877655321 11
Q ss_pred -------------CCc---------hhhHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHh
Q 000051 2509 -------------ANT---------TVVVDILASVVSALHD--DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 2564 (2612)
Q Consensus 2509 -------------~~~---------~~l~~~l~~~~~~l~~--~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~ 2564 (2612)
.++ .....++..++..+.+ .++-.=.+++..|..+++..|... ..++|.+..
T Consensus 196 ~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~----~rIl~aL~~ 271 (386)
T 3o2t_A 196 RRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM----SEVIQAYET 271 (386)
T ss_dssp GGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHH
T ss_pred cccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHH----HHHHHHHHh
Confidence 111 1123455666665543 233344678888999999988764 334444332
Q ss_pred hh--------cCCcchhhhhHHHHHHHHhcccccchhhh-HhhhhhccCC
Q 000051 2565 CL--------KDGSTPVRLAAERCAVHAFQLTRGIIYSR-STKIYNRLGC 2605 (2612)
Q Consensus 2565 ~~--------~~~~~~vk~aae~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 2605 (2612)
-. +-..--|+...--.|+++++-+-..++.+ .+.+|.++|-
T Consensus 272 l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~ 321 (386)
T 3o2t_A 272 LHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGT 321 (386)
T ss_dssp HHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcc
Confidence 11 11122266777789999999887776666 9999998885
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=91.85 E-value=5.8 Score=44.07 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHH
Q 000051 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2612)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~L~~~~g~~~---~~~ll~~L~ 1663 (2612)
...-....+.+..+... ..=.+.||+.+++|.+..++-.. ...+|+.|+..++.++..+|..+ .+.+...+.
T Consensus 60 l~~L~~lm~~~~ALl~N--~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 60 AEVLKTCIALYFSLIKN--KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 44444445555555552 22457899999999999987532 22899999999999999998753 244555555
Q ss_pred HHhccC-CCHHHHHHHHHHHHHHHHHhChhhHHhHh-HHH
Q 000051 1664 DALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHIL-PDI 1701 (2612)
Q Consensus 1664 ~~L~~~-~~~~~R~~aa~~L~~i~~~~g~~~l~~ll-p~l 1701 (2612)
+.+.+. .+....-||..++.. +|.+..+.++ |.+
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l 173 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHA 173 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCH
Confidence 555443 455667788877664 4666554433 554
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=26 Score=43.43 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHH
Q 000051 2091 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2612)
Q Consensus 2091 r~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~ 2170 (2612)
+-..+.-...++..-+..-++.+++.++....+.+..+|...+..+...|.. -..+.+.++..|..++.|.|+.|.
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4444444444444334556788899999988888999999999988888763 234568888888888999999999
Q ss_pred HHHHHHHHHHHh
Q 000051 2171 AAAWEALSRVVA 2182 (2612)
Q Consensus 2171 ~~a~~aL~~l~~ 2182 (2612)
+.+..+.+.+..
T Consensus 118 K~~I~~~tslYp 129 (386)
T 3o2t_A 118 KKAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887653
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=91.37 E-value=2 Score=47.66 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=88.0
Q ss_pred cCchhhHHHHHHHHhc------CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCC-C-CHhHHHHHHHHH
Q 000051 2225 KALQPLLPIFLQGLIS------GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-F-PWQVKSAILSTL 2296 (2612)
Q Consensus 2225 ~~l~~ilp~l~~~L~~------~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~-~-~~~vk~~al~~L 2296 (2612)
.|+++++|.|.+-+.+ .+...-...+.....++++.. -.+.||+.+++++++..+-.+ . +..+|..|...+
T Consensus 36 ~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL 114 (196)
T 4atg_A 36 SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIV 114 (196)
T ss_dssp SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 4677888887754433 245555566777777887655 568999999999988765432 2 237999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L 2340 (2612)
+.++++.+......-|.+..++.+.+.|+ +....--|..+|..+
T Consensus 115 ~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 115 KYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 99999998877777899999999999997 677777777777766
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=90.06 E-value=5 Score=57.73 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHHHHhh-------cHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHH
Q 000051 1432 QVVAVREAAECAARAMMSQL-------SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2612)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l-------~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L 1504 (2612)
.++.+|+.++-+++.++... +.+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 45677887777777666532 222345555556666666676777888889998863 3344555
Q ss_pred hhhhc-------CCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCC--ChhHH-HHHHHHHhccccccCChhhH
Q 000051 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~--~~~~r-~al~~L~~~~~~~~i~~~~l 1574 (2612)
.+++. +...+||.+|++||..+.... | ..+-+.+++...|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55543 224689999999999887532 2 23444555555443 34566 455555431 1333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
..+.......-.+++.+++......|.++++.
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 32333333333556777777777777776653
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.67 E-value=36 Score=39.72 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChh
Q 000051 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168 (2612)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~ 2168 (2612)
+.+-..+.-...++..-+...++.+++.++....+.+..+|...+..+...|..- ..+.+.+++.|..+++|.|+.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 4555555555555444455678999999999888888999999999888888542 357788899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000051 2169 TVAAAWEALSRVVA 2182 (2612)
Q Consensus 2169 V~~~a~~aL~~l~~ 2182 (2612)
|.+.+..+.+.+..
T Consensus 106 V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 106 VIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887764
|
| >3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* | Back alignment and structure |
|---|
Probab=86.41 E-value=7.7 Score=44.97 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=92.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHH-HHHHHHHHhhCCccccCCchhHH
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
+.+..+..+...+.|-.|...+....+...++.+ +.+..++. .-++|..--.. ...++.+++..|...
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l-~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~~~-------- 132 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHI-PFLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPELI-------- 132 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGH-HHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGGGG--------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHHHH--------
Confidence 3455566666667888888777765554544433 24445544 24566543322 234455666666532
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~ 2552 (2612)
.+.+...+.++++.+|+.|+.++ +.+.... .....+..+...+.|++.=||++...+|+.+++++|+.+.
T Consensus 133 -~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~~------d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 133 -SAYIPKWIASDNIWLQRAAILFQ---LKYKQKM------DEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp -GGTHHHHHHSSCHHHHHHHHHTT---TTCGGGC------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHH---HHHHhCC------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 23456677889999999998764 2222111 2334455555667899999999999999999999999999
Q ss_pred hhHhH
Q 000051 2553 VHVAL 2557 (2612)
Q Consensus 2553 ~~l~~ 2557 (2612)
+++..
T Consensus 203 ~fl~~ 207 (232)
T 3jxy_A 203 EYVQN 207 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=85.42 E-value=40 Score=46.35 Aligned_cols=276 Identities=13% Similarity=0.137 Sum_probs=139.5
Q ss_pred HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcC---CCHHHHHHHHHHHHHHHhhcCC
Q 000051 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
|+.++|.++.++.+++-.....+..+|..+++..|......+|.++..+...|+. ..+-=-.+|.+++..++..+-.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 5677788888888888888888889999999988833333456666666666655 3344345667777777655432
Q ss_pred -hhH----hhHHHHHHhhcCCCChhHH--HHHHHHHhccccccCC-----h--hhH---hhHHHHHHHhh---c------
Q 000051 1533 -PEI----ASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTVD-----A--PSL---ALLVPIVHRGL---R------ 1586 (2612)
Q Consensus 1533 -~~i----~~ivp~Ll~~l~d~~~~~r--~al~~L~~~~~~~~i~-----~--~~l---~~iip~L~~~l---~------ 1586 (2612)
+.+ ..++..++..+ |+++-.+ .+++.+.. +...+. . ..+ ....|.+..-+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~--i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVS--IAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSK 493 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHH--HHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSS
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHH--HHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccc
Confidence 222 22333333332 5544322 22332221 211110 0 110 00011111110 0
Q ss_pred ----CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCCCchhhHHH
Q 000051 1587 ----ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661 (2612)
Q Consensus 1587 ----d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~ 1661 (2612)
|.+.+.+ .++.. + ..+..++..++..+..++.+ .+..+-.....++..+...+.++.++.++..
T Consensus 494 ~~~~d~~~~~~--------~~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k 562 (799)
T 1vsy_4 494 TFRVDDELLNN--------AFKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASL 562 (799)
T ss_dssp SCCCCTTHHHH--------HHHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred cccccHHHHHH--------HHHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0111100 01111 1 13445566666667776663 3444445566667777777777777777776
Q ss_pred HHHHhccCCCHHHHHHHHHH----HHHHHHHhChhhHHhHhHHHHHhcc----CC------Chhh--Hh----HHHHHHH
Q 000051 1662 LLDALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCS----HQ------RASV--RD----GYLTLFK 1721 (2612)
Q Consensus 1662 L~~~L~~~~~~~~R~~aa~~----L~~i~~~~g~~~l~~llp~l~~~~~----~~------~~~v--R~----~~~~~l~ 1721 (2612)
+.+...+............- +..++..-+. .+..++|.+...+. +. ..++ |+ -.+.++.
T Consensus 563 ~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~ 641 (799)
T 1vsy_4 563 LNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALN 641 (799)
T ss_dssp HHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHH
Confidence 66655443211100111111 2333333333 56666666653321 11 1111 22 3456777
Q ss_pred HhhhhhccchhhhHHhHHHHHHhhc
Q 000051 1722 YLPRSLGVQFQNYLQQVLPAILDGL 1746 (2612)
Q Consensus 1722 ~L~~~~g~~f~p~l~~iip~ll~~L 1746 (2612)
.+....|+.+.+|-.+++..+-..+
T Consensus 642 ~~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 642 DVLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHccHHHHHHHHHHHH
Confidence 7777778888888877777665554
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.50 E-value=68 Score=37.41 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCc
Q 000051 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 2443 (2612)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~ 2443 (2612)
+.|-..|.-.++++-+.. +.+.+++++.+.....+++..+|.-.++.++..+...++ .....++.+...+.+++.
T Consensus 30 ~~kl~~L~qa~el~~~~d----p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC----AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-LLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT----GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccC----HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCH
Confidence 455555555566544321 234455555555555566667777777777776655442 333333333232334444
Q ss_pred hhhHHHHHHHHHHHhhCCccccC--------CchhHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhcc--C---
Q 000051 2444 AARHGSVLVFATFLRHNPSAISM--------SPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--G--- 2507 (2612)
Q Consensus 2444 ~~~~~~~~~l~~~l~~~p~~~~~--------~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~--- 2507 (2612)
.+...++.+...+.+..-..+.. ...|+. +-..+...+.+++..+|-.++.=+-.++..+... +
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 44445555544443211111110 123333 3455666778888999999998888877654321 1
Q ss_pred ----------CCCch---------hhHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCchhh
Q 000051 2508 ----------PANTT---------VVVDILASVVSALHDD--SSEVRRRALSALKSVAKANPSAI 2551 (2612)
Q Consensus 2508 ----------~~~~~---------~l~~~l~~~~~~l~~~--~~~vr~~a~~~l~~~a~~~~~~v 2551 (2612)
|.++. ....++..++..+.+. ++-.=.+++..|..+++..|...
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 11111 1223444455443332 44345688888999999988753
|
| >3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus} | Back alignment and structure |
|---|
Probab=84.05 E-value=1.8e+02 Score=41.86 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh
Q 000051 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG 2425 (2612)
Q Consensus 2346 ~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2612)
.+..++.-.-..+++.++.++.........+.... +..+.+.|+..|..++-+.+..--..+...|..|+...|.
T Consensus 397 ~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f----d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~- 471 (1323)
T 3s4w_B 397 ICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF----DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNAS- 471 (1323)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHH-
Confidence 33333333333456678888888887777777764 2456788887776665555555556688888888876664
Q ss_pred HHH---HHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000051 2426 QLA---DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2612)
Q Consensus 2426 ~~~---~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2612)
.+. .++..+|....+-+....+..+..|+.+.-..+.. -.....+++--++.+.+.+.+..+++-++.+.-.++.+
T Consensus 472 ~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~-~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~ 550 (1323)
T 3s4w_B 472 AMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPG-TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGI 550 (1323)
T ss_dssp HHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC-cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHH
Confidence 333 35555555544444433334455555443322211 12245678888889999999999988877766666655
Q ss_pred h
Q 000051 2503 Q 2503 (2612)
Q Consensus 2503 ~ 2503 (2612)
-
T Consensus 551 ~ 551 (1323)
T 3s4w_B 551 M 551 (1323)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=83.07 E-value=60 Score=46.54 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcC----CChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2152 PNMISTLIVLLSD----SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2152 ~~il~~L~~ll~d----~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
++++..+..++.. .++.++..++-+++.++...-.. ...|-++.+
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~-------------------------------~~~c~~~~v 438 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN-------------------------------TVSCPDELL 438 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT-------------------------------CSSCCGGGT
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc-------------------------------CCCCCHHHH
Confidence 4667777777754 45678888999999887642110 012333445
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhc------CCCCHhHHHHHHHHHHHHHH
Q 000051 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG------DRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~------~~~~~~vk~~al~~L~~L~~ 2301 (2612)
.++...+.+++..++.+.+..+..+||.+..- .. +..|.+.+. ...+..++.+|+.+|..+..
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~--------l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NS--------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GG--------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hH--------HHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 66777777788888888888899999987632 11 122233332 11245688889988876653
Q ss_pred hcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhc-CCHHHHHHHHHHHHHHH
Q 000051 2302 KGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVL 2377 (2612)
Q Consensus 2302 ~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~-~d~~vr~~~l~AL~~vi 2377 (2612)
. +-..+.+.+++.+.|. +.++|.+|...| +...|. ...+..+...+.. ++..|+..+...|+.+.
T Consensus 508 ~-------~p~~v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 508 R-------DPRKVQEIVLPIFLNVAIKSELRIRSCIVF---FESKPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp T-------CHHHHHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred h-------chHHHHHHHHHHhcCCCCChHHHHHHHHHH---HHHCcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 2 1135677888888664 899999987655 333343 2356666666643 45666665555555443
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=82.01 E-value=1e+02 Score=42.28 Aligned_cols=222 Identities=9% Similarity=0.054 Sum_probs=133.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc---hhhhhhHHHHHhhhcCC---CChhHHHHHHHHHHH
Q 000051 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKD---PSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1876 ~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~---~~~l~~llp~L~~~L~d---~~~~vR~~a~~aL~~ 1949 (2612)
+...+.++..+.|.+...+-+++......+..++..++--.+ +-++|.++.-+...|.. ..+.-...++.++..
T Consensus 330 ~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~ 409 (799)
T 1vsy_4 330 SFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTR 409 (799)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 345567888888999888999999999999999999988655 66888888888777776 344444455666655
Q ss_pred HHHhhC-hhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh---h-------hHHHHHHhccCCCcc
Q 000051 1950 VMASAG-KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID---E-------IVPTLLHALEDDQTS 2018 (2612)
Q Consensus 1950 li~~~~-~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~---~-------ilp~Ll~~L~~~~~~ 2018 (2612)
++...- ...+..|+..++..+...+.-.|+.-...+...+..+...+.-.... + +.|..-..
T Consensus 410 ~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~------- 482 (799)
T 1vsy_4 410 VIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQH------- 482 (799)
T ss_dssp THHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHH-------
T ss_pred HHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhh-------
Confidence 543322 22456788888888888887778877777888888776654321110 0 01110000
Q ss_pred hHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcC-CCCHHHHHHHHHH
Q 000051 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEA 2097 (2612)
Q Consensus 2019 ~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~a 2097 (2612)
+..+++ ..... +.+-... .-.+++ ......+..++...+..++..+. +.++.+-.....+
T Consensus 483 ---~~~l~~---~~~~~--------~~~~d~~-~~~~~~----~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~ 543 (799)
T 1vsy_4 483 ---FYHIKC---GESSK--------TFRVDDE-LLNNAF----KASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQT 543 (799)
T ss_dssp ---HHHHHT---TCCSS--------SCCCCTT-HHHHHH----HHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHH
T ss_pred ---hhhhcc---ccccc--------cccccHH-HHHHHH----HHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 000000 00000 0000000 001111 11245567777777777777775 3344444555667
Q ss_pred HHHhhhhcccccHHHHHHHHHhhcCC
Q 000051 2098 AETVTLVIDEEGVESLVSELLKGVGD 2123 (2612)
Q Consensus 2098 l~~l~~~~~~~~l~~ll~~Ll~~l~~ 2123 (2612)
+..++.+++++-++.++..+.+.+.+
T Consensus 544 ~~~l~~~lS~~if~~~l~k~~~fv~~ 569 (799)
T 1vsy_4 544 TMILQESMDDKIFNYFASLLNRNFWS 569 (799)
T ss_dssp HHHHHHTBCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 77778888887777777777776543
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=80.27 E-value=49 Score=41.05 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccCchHHHHHHH
Q 000051 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 2318 (2612)
Q Consensus 2241 ~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~lpqL~~~~ 2318 (2612)
++......-..-+..+++..++..+.+....+..-+.+.+... +..|-..|+..+. .+..-+.......+|-+.+.+
T Consensus 263 tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 263 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 3433333445668888888888888877777777777777764 6677777776653 223222222233445555556
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhccCC
Q 000051 2319 IKCLQDS-TRTVRSSAALALGKLSALSTR 2346 (2612)
Q Consensus 2319 ~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~ 2346 (2612)
.+....- |..||..|..++..++.+.+.
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 5554443 999999999999999877543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2612 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-75 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-67 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-40 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-24 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-19 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 8e-38 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 7e-26 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-23 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-15 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 4e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-33 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-17 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 9e-05 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 8e-31 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 5e-18 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 7e-04 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-22 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-17 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-09 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 9e-19 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 9e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-10 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-07 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 9e-16 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-13 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 5e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-09 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 8e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 5e-11 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 6e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 3e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 9e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.003 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 6e-10 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 8e-09 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-08 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-04 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 0.001 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 7e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.001 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 4e-05 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 1e-04 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 0.002 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 0.004 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (703), Expect = 1e-75
Identities = 154/1100 (14%), Positives = 362/1100 (32%), Gaps = 77/1100 (7%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+ +LL+ + + + L+ + + + K+V + ++L D + +VQ+
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
L + S +K ++ ++V TL + + + I L+T A S + L
Sbjct: 65 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 1579 PIVHRGL---------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
V + + ++ + +A I+ +M S + ++ + +L + L
Sbjct: 125 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS--RQGGLLVNFHPSILTCLLPQLT 182
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
P VR A+G L+ G F DL+ LL L ++S Q ++ +
Sbjct: 183 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242
Query: 1690 GTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746
G Y E I+P +++ C+ +R+ + F+ R + ++ ++ L L
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 302
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806
+ D + + + +W++R+++ + L ++
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGG-DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361
Query: 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ E + + +V A +
Sbjct: 362 HEMLPEFYKTVSPALISRFKERE---------ENVKADVFHAYLSLLKQTRPVQSWLCDP 412
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---S 1923
L+ +P ++ L + S + RQ L ELV L +
Sbjct: 413 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472
Query: 1924 IIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
++P + L D S++ + L ++ + + L+P + + D ++
Sbjct: 473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 532
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
A L L K D +S A +K + T + +
Sbjct: 533 TSEALLVTQQLVKVIRPL--------------DQPSSFDATPYIKDLF----TCTIKRLK 574
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK--EAAE 2099
+ + +G + G L L L L + ++ + ++ A
Sbjct: 575 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAG 634
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
+ + + V L + NQ +++ + + KN L + + +
Sbjct: 635 SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 694
Query: 2160 VLLSDSDSTTVAAAW--------EALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK 2211
L V+ + ++ + + I ++R +
Sbjct: 695 PPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 754
Query: 2212 KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP 2271
+++ G + L + +A +Q+ + + + + KE
Sbjct: 755 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAV 814
Query: 2272 ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRS 2331
+ + + R ++ L +L + + +L++ ++ + V+S
Sbjct: 815 VGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKS 871
Query: 2332 SAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+A+ ALG +S + + + +L + S + +L +LK ++ A
Sbjct: 872 AASYALGSISVGN--LPEYLPFVLQEIT-SQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 2451
++++L ++ R A LG ++ LL L S S AR V
Sbjct: 929 IWALLLKHCECAEEGTRNVVAECLGKLTL----IDPETLLPRLKGYLISGSSYARSSVVT 984
Query: 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511
+ +P I PL + + +L+D +R + ++
Sbjct: 985 AVKFTISDHPQPI--DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK-------P 1035
Query: 2512 TVVVDILASVVSALHDDSSE 2531
+++ D+L +V+ L++++
Sbjct: 1036 SLIRDLLDTVLPHLYNETKV 1055
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 249 bits (636), Expect = 2e-67
Identities = 156/1107 (14%), Positives = 358/1107 (32%), Gaps = 92/1107 (8%)
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
L +K + +K D L K K DD VV +L +L + VQ
Sbjct: 8 LLEKMTSSDK-DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66
Query: 1322 SCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK---- 1376
CL PL+ + + + T+V L M SDK R ++ GL V+ +S
Sbjct: 67 KCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 1377 ---YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQV 1433
I L +A + + AL + + G L + +L LL +
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR 185
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ 1492
+AVR+ A ++ ++ LL L ++ + T ++ +Q + A++ A +
Sbjct: 186 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245
Query: 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTD- 1548
+ + L KI+P + + +++ A + P +++++ L LT
Sbjct: 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305
Query: 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608
PN + + D + + + S + ++ AA+ + + + T
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGS---DDEYSDDDDMSWKVRRAAAKCLDAV--VST 360
Query: 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
+ + + + P + + V++ A SL++ ++ ++
Sbjct: 361 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 420
Query: 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
+ ++ +I+ + + + R + L L
Sbjct: 421 PLTMLQS-----------------QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463
Query: 1729 VQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLP----AVED 1782
++ ++P I+ L D + +++ AL +V++ +++ + V
Sbjct: 464 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842
+ + ++I ++ + L+ + + + + T
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK------------ 571
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1902
+ +D+ V++ A+ I+ N L +P + + L + +
Sbjct: 572 -------RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 1903 QVA--GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
V G ++ VL +PIL+ L+ + + G L ++ + S
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQT 2017
+ +D ++ + + +S + V + A +TL K + I+ L+ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 2018 SDTALDGLKQIL-----SVRTTAVLPHILPKLVHLPLSAFNA-------HALGALAEVAG 2065
AL + + +L L S A +++
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 2066 PGLNFHLGTILPALLSAMGDDDMD--VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
++ + + + ++ LA + V ID G L S +L+
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
++ +++Y +G + ++ S +L +++S
Sbjct: 865 PSEEVKSAASYALG--------SISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS 916
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
Y++ I + + + G + LLP LISGS+
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSS 976
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
R + I + + + G ++ + D V+ L T +
Sbjct: 977 YARSSVVTAVKFTISDHPQ-PIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSAAHNK 1034
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVR 2330
++ L + + +R
Sbjct: 1035 PSLIRDLLDTVLPHLYNETKVRKELIR 1061
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (406), Expect = 5e-40
Identities = 140/999 (14%), Positives = 306/999 (30%), Gaps = 103/999 (10%)
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++ + K+L D EV+++A + +G L+ + E +V L + SD + R ++
Sbjct: 46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL-RDISS 104
Query: 1680 QGLSEVLAAL-----GTVYFEHILPDIIRNCSHQRA-----SVRDGYLTLFKYLPRSLGV 1729
GL V+ L G+ ++ I + A SV+ L + + G
Sbjct: 105 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDN 1788
N+ +L +L L +VR + A LV L+ + + ND+
Sbjct: 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 224
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
++ ++ + + + G+ L +++
Sbjct: 225 MSTTRTYIQCIAAISRQAGHRIGEYL----------------------------EKIIPL 256
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+ + +R+ + +++ V PK + + ++N + L +
Sbjct: 257 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 316
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
+ G+ S RR + + S L F + P
Sbjct: 317 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA--AAKCLDAVVSTRHEMLPEFYKTVSP 374
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
+ + + V+ A+ +L K P + E T L+
Sbjct: 375 ALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT------MLQSQ 428
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
+ A+ + K + + L L V L H+ ++P ++ ++ D
Sbjct: 429 VPNIVKALHKQMKEK--SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 2089 DVQSLAKEAAETVTLVIDEEG------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142
+ ++ + V++LV ++ VGD I + + K
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV 546
Query: 2143 SKLYLVDEAPNMISTLIVLLS---------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
+ + + + L + D D A + +++ ++ +
Sbjct: 547 IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLP 606
Query: 2194 KVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLLPIFLQGLI----SGSAELREQ 2248
++ + +++ R + I G L L+P+L + L L+
Sbjct: 607 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLG 666
Query: 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
L LI+ S+ I + + V +S L+ + + +L
Sbjct: 667 TLSALDILIKNYSDSLTAAM-IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 2309 PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSL--------- 2358
+ I ++ + SA L + ++ + DLL L
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM 2418
++ +I + + + K + V + V D +R+ A LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNS---RSTDSIRLLALLSLGEV 842
Query: 2419 SQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK 2478
++ +L +L SSPS + + + N P L +
Sbjct: 843 GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--EYLPFVLQEIT--- 897
Query: 2479 SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS 2538
+ + +L ++ G V +I A ++ R
Sbjct: 898 -----SQPKRQYLLLHSLKEIISSASVVGLKP--YVENIWALLLKHCECAEEGTRNVVAE 950
Query: 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L + +P ++ P L L GS+ R +
Sbjct: 951 CLGKLTLIDPETLL-------PRLKGYLISGSSYARSSV 982
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (273), Expect = 3e-24
Identities = 127/948 (13%), Positives = 281/948 (29%), Gaps = 91/948 (9%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ L +DP + + ED
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 317
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 377
Query: 1178 RDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRML 1237
+NV A L + L ++ +
Sbjct: 378 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 437
Query: 1238 NAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297
+ +K + + E + + ++ + L
Sbjct: 438 K---QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP-------GIIFSLNDKSSS 487
Query: 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRG 1357
+ +D L + + + L+ + + ++ ++
Sbjct: 488 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV---ACVGDPFYKITSEALLVTQQLV 544
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
F + K T++ A + +E A+ + LG
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 1418 VIQMLPLLLVAFSD---QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
+ L + L + ++ V+ A + L + +P L L
Sbjct: 605 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRAL 663
Query: 1475 KQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
K ++ L + + + +P L ++ + T L +V
Sbjct: 664 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSS 723
Query: 1531 KNPEIASLVPTLLMGLTDP--NDHTKYSLDILLQTTFVNTVDAPSLALLVP-IVHRGLRE 1587
+ S++ L+ + P ++ Q V + L+ + +
Sbjct: 724 LSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ 783
Query: 1588 RSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+A T K++ + + +T PK+ +G + +VK +R +A ++G
Sbjct: 784 STALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--SIRLLALLSLGE 841
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
+ + +L S +L+A S + V +S A+ L + LP +++
Sbjct: 842 VGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYALGS----ISVGNLPEYLPFVLQEI 896
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
+ Q +L + + + V + Y++ + +L E R+ L
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT 956
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
T LP L + G + R S V + + D
Sbjct: 957 LIDPETLLPRLKGYLISG----SSYARSSVVTAVKFTI----------------SDHPQP 996
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
+ + I L L D L+VR+ AL + + N P +++++
Sbjct: 997 IDPLLKNCIGDF--------LKTL----EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1044
Query: 1886 LMNTLISSLASSSSERRQVA------GRALGELVRK-------------LGERVLPSIIP 1926
++ L + R+V G +RK L + +
Sbjct: 1045 VLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLN 1104
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974
+ GLKD + + L +++ S +L +D L+ +R
Sbjct: 1105 HVEDGLKDHYDIKMLT-FLMLVR-LSTLCPSAVLQRLDRLVEPLRATC 1150
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.5 bits (228), Expect = 6e-19
Identities = 162/1207 (13%), Positives = 327/1207 (27%), Gaps = 110/1207 (9%)
Query: 354 NALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSD 413
N L K + + K +L +D+ N EV+ + + + +
Sbjct: 25 NDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQVET 83
Query: 414 LLSFFASGLKE-KEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLD 472
++ + + KE LR L+ + S+L + + + T A+ + +
Sbjct: 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE 143
Query: 473 GIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCM--ACVEL 530
+ ++ A DI A+ + L+ PS++ + S + +
Sbjct: 144 DVSV-----QLEALDIMADML---SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195
Query: 531 LVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLL 590
L L++ + V L+ L+ + + S + I H L
Sbjct: 196 LGHLVMSCGNIVFV----DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Query: 591 EFSNF-LSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASAR 649
+ + + F V V T++ I L P+ +
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311
Query: 650 VIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANL 709
DA ++ + +S V L ++ +
Sbjct: 312 DEDED-------ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 364
Query: 710 LEQ--QAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSS 767
L + + +L + ++ L D E L+
Sbjct: 365 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 424
Query: 768 EQGV------YIAEIVAAKNTKQSKGRFRMYEE------QDGVDHVGSNHSAKRESANRE 815
Q + + + K+ K + F M E H+ S N +
Sbjct: 425 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 484
Query: 816 VSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSL-MLSALGEMA 874
S + K S + + + + V ++ L ++
Sbjct: 485 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 544
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++ L I A + ++ + ++ L
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 935 VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERIL 994
+ + + + L I TV + + P++
Sbjct: 605 LPNTLQIFLE---------------RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEG- 648
Query: 995 LSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGL 1054
+L + L L L + +L S AA+ A+ + L
Sbjct: 649 ---------VPILASFLRKNQRALKLGTLSALDILIKNYS--DSLTAAMIDAVLDELPPL 697
Query: 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVA 1114
+ + +++ I L + S L
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR-SPLLQGGALSAMLDFF 756
Query: 1115 EAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFS 1174
+A S S + ++A + + +
Sbjct: 757 QALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVG 816
Query: 1175 LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRG 1234
+I+D+ N + R L+L + + + ++ A + + +V+
Sbjct: 817 QFIQDV----KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL-EAFSSPSEEVKS 871
Query: 1235 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294
A I + + + + + + +Y L+ I + A L
Sbjct: 872 AASYALGSISVGNLPEYLPFVLQEITS------QPKRQYLLLHSLKEIISSASVVGL--- 922
Query: 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354
P V + LL E + V+ CL L + L + S
Sbjct: 923 KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR----LKGYLISGSSYA 978
Query: 1355 RRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412
R + + I L K I L+ L D + RR AL+ F
Sbjct: 979 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT-LEDPDLNVRR-VALVTFNSAAHNKPS 1036
Query: 1413 LFEPYVIQMLPLLL------------VAFS------DQVVAVREAA-ECAARAMMSQLSA 1453
L + +LP L V D + +R+AA EC + S L
Sbjct: 1037 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR 1096
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
+ L + GL+D + K + +L ++ P + Q L ++V L T T
Sbjct: 1097 LDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCT-TKV 1154
Query: 1514 KVQSAGQ 1520
K S Q
Sbjct: 1155 KANSVKQ 1161
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 152 bits (385), Expect = 8e-38
Identities = 117/915 (12%), Positives = 278/915 (30%), Gaps = 101/915 (11%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 63
Query: 1555 YSLDILLQTTFV---NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
++L+ + + + S + ++ + S K
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIAS-----K 118
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD--------LVSWLL 1663
+ LLP++ +L A A+ + E D ++ L
Sbjct: 119 GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 178
Query: 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEH---ILPDIIRNCSHQRASVRDGYLTLF 1720
K + + RS A +++ + + H ++ + VR
Sbjct: 179 QFFKHSSPKI-RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL 237
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPL 1775
L + ++ ++ +L D++E+V A L E LP
Sbjct: 238 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 297
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
L+P + +G+ + I ++ D + + E +
Sbjct: 298 LIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDD 357
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895
++ ++R+ + + L + L+ L+
Sbjct: 358 DDDEIDDDDT---------ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 408
Query: 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955
E + A+ E + LP +IP L + L D A R C LS
Sbjct: 409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468
Query: 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL 2012
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A
Sbjct: 469 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 528
Query: 2013 EDDQTSD--TALDGLKQI-LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN 2069
Q + D + + SV P + L+ + +N +
Sbjct: 529 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE----------D 578
Query: 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-NQASI 2128
L +L L S + + ++ + +++++ +
Sbjct: 579 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 638
Query: 2129 RRSSAYLIGYFYKNSKLYLVD--EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186
+ L+ + + N+++ + + D +++ L + + +
Sbjct: 639 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ 698
Query: 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 2246
V+P + +PI L +
Sbjct: 699 HVKP-----------------------------------CIADFMPILGTNLNPEFISVC 723
Query: 2247 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKGGI 2305
A +GE+ + ++ ++ + L+ II P + T+ +
Sbjct: 724 NNATWAIGEISIQMGIE-MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 782
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTV-RSSAALALGKLSALSTRVDPLVGDLLSSLQV--SD 2362
+ P L Q + L++ + SA + + +S ++ D + S
Sbjct: 783 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTM--ISVNPSGVIQDFIFFCDAVASW 840
Query: 2363 AGIREAILTALKGVL 2377
++ + +L
Sbjct: 841 INPKDDLRDMFCKIL 855
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (285), Expect = 7e-26
Identities = 119/816 (14%), Positives = 246/816 (30%), Gaps = 78/816 (9%)
Query: 1292 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQLM 1347
P + + +L L + E + L + Q+ + + +
Sbjct: 38 LNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 97
Query: 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407
R + + + + + L L EGA A + +C
Sbjct: 98 GDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDS-EDYNTCEGAFGALQKIC 154
Query: 1408 EKLGRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAM---MSQLSAQGVKLV 1459
E + + V+ M+P L F +R A +Q +
Sbjct: 155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 214
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+L D+ +++ + L + +L + IV + + D V
Sbjct: 215 TENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 274
Query: 1520 QTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+ ++ +P L+ L + ++ + +L + S +
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
P HR + +D I E+ +R
Sbjct: 335 PRFHR------------------SRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKC 376
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS--GAAQGLSEVLAALGTVYFEH 1696
+A A+ L +E P ++ L + L V+ S ++E Y
Sbjct: 377 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 436
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVLPAILDGLADENESVRD 1755
++P +I+ S ++A VR + Q + YL+ ++ +L + D N+ V++
Sbjct: 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 496
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
AA A L E T +P L + D + + + ++ +L D + +A + G L
Sbjct: 497 AACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN 555
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+ + + +L L V + + V++ V
Sbjct: 556 KPEYIQMLMPPLIQ-KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 614
Query: 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP-----SIIPILSR 1930
KTL + M + VA L L LG + +I+ ++ +
Sbjct: 615 QKTLAQAMLNNAQPDQYEAP--DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 672
Query: 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
++D RQ L + A + + + +P + T L + V +A A
Sbjct: 673 CMQDKMPEVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIG 731
Query: 1991 TLFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
+ G++ I ++ L+ + T T L+
Sbjct: 732 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT---------------------- 769
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 2083
A +G L V + L + +++
Sbjct: 770 ------AITIGRLGYVCPQEVAPMLQQFIRPWCTSL 799
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 2e-23
Identities = 109/780 (13%), Positives = 246/780 (31%), Gaps = 78/780 (10%)
Query: 1093 PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAA 1150
+ ++ L P+ ++ + ++ DF + L + R +
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66
Query: 1151 AEALATALDEYPDSI-QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR 1209
L + + + G + S + +IG + R + + + + A
Sbjct: 67 GLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI------RATVGILITTIASKGE 120
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFEN 1261
++ P ++ L S L + + A I + ++++ P F
Sbjct: 121 LQNWPDLLPKLCS-LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 179
Query: 1262 YLNKKASD-------------EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-D 1307
+ + + + + FT L ++P+V V + L
Sbjct: 180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM 239
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL-MKSDKYGERRGAAFGLAGVV 1366
+L + + + + + ++Q QD+ + + +++ + L ++
Sbjct: 240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 299
Query: 1367 KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426
L+ + + + E + + + + I+
Sbjct: 300 PVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDD 359
Query: 1427 VAF----SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1482
+ +R+ + A + + + + +LP L + L W K+S + +L
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419
Query: 1483 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASL 1538
GA+A Q + LP+++P L + L+D V+S L + + + + L
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
+ LL + D N + + T T P LA ++ + + +
Sbjct: 480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLIL 539
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL---------VDPIPEVRSVAARAIGSLI 1647
+G + V + YI +L+P + + + P+ E S A A+ S
Sbjct: 540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599
Query: 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSG------------AAQGLSEVLAALGT---- 1691
E + V+ + L N + A LS + LG
Sbjct: 600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 659
Query: 1692 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750
V +IL + + + VR L L ++ + + +P + L E
Sbjct: 660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
Query: 1751 ESVRDAALGAGHVLVEH-------YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
SV + A A + Y L L+ + + +++ +G L
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKT--LLENTAITIGRLG 777
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (197), Expect = 2e-15
Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 8/276 (2%)
Query: 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAIL 2370
L Q+ +K Q T++ + L +L+ + L+ +L+ L+ D R
Sbjct: 10 LQQI-LQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLI-FVLTKLKSEDEPTRSLSG 67
Query: 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL 2430
LK +K ++ + V + S + + +R + ++ ++ E DL
Sbjct: 68 LILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL 127
Query: 2431 LQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEKFP 2487
L +L +L S + G+ + + L ++ + K
Sbjct: 128 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 187
Query: 2488 LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547
+R + + + ++ + Q+ + + ++ + D+ EVR+ AL + +
Sbjct: 188 IRSHAVACVNQFIISRTQALMLH---IDSFTENLFALAGDEEPEVRKNVCRALVMLLEVR 244
Query: 2548 PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVH 2583
++ H+ + + +D V L A +
Sbjct: 245 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 280
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.8 bits (177), Expect = 4e-13
Identities = 109/796 (13%), Positives = 239/796 (30%), Gaps = 97/796 (12%)
Query: 1037 PSYQAAIGSALNELCLGLQPNEVASALHGVYTK----DVHVRMACLNAVKCIPAVSTRSL 1092
P +A +G + + + L + + D + A++ I S L
Sbjct: 102 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 161
Query: 1093 PENI------EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYD--------FGTDYSGLFKA 1138
++ + + A +++ + LF
Sbjct: 162 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFAL 221
Query: 1139 LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198
VR AL L+ D + + + ++ +NV A +
Sbjct: 222 AGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV-ALEACEFWLT 280
Query: 1199 LALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPI 1258
LA + + LP ++ L+ + ++ D+ +L G + D+ D+ + P
Sbjct: 281 LAEQPICKDVLVRHLPKLIPVLV-NGMKYSDIDI---ILLKGDVEEDETIPDSEQDIRPR 336
Query: 1259 FENYLNK---------KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL 1309
F + D++ ++ + + A D + D+LL +
Sbjct: 337 FHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHI 396
Query: 1310 ----------------NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
+ + C+ ++ + + P L+ Q + K
Sbjct: 397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI-----QCLSDKKAL 451
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAA--TLREGLADRNSAKRREGALLAFECLCEKLG 1411
R + L+ Y L + + D N + +E A AF L E+
Sbjct: 452 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEAC 510
Query: 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471
PY+ +L L+ AFS A + + K +L +
Sbjct: 511 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 570
Query: 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD----------------THPKV 1515
W + + L + C + +P V P
Sbjct: 571 WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 630
Query: 1516 QSAGQTALQQV-------------GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
A V G++ + ++++ + + D + S LL
Sbjct: 631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 690
Query: 1563 TTFVNTVD--APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
P +A +PI+ L A +G + + +M PYI ++
Sbjct: 691 DLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS--IQMGIEMQPYIPMV 748
Query: 1621 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVER 1675
L ++ +++ P + A IG L +E + +L++ N E+
Sbjct: 749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 808
Query: 1676 SGAAQGLSEVLAALGTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQ 1732
A +G+ +++ + + + D + + + + +RD + + +G ++
Sbjct: 809 DSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWR 868
Query: 1733 NYLQQVLPAILDGLAD 1748
+ Q + + LA
Sbjct: 869 RFSDQFPLPLKERLAA 884
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 138 bits (348), Expect = 2e-33
Identities = 126/962 (13%), Positives = 286/962 (29%), Gaps = 165/962 (17%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556
+ L + ++ +T L++ + N L D N +
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKK----LSNDNFLQFAGLSSQVLIDENTKLEGR 58
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
+ L T N + + R + + S E K QI N +
Sbjct: 59 ILAAL--TLKNELVSKDSVKTQQFAQRWITQVSPEAK---NQIKTNALTA---------- 103
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVER 1675
LV P + + AA+ I ++ + +P+L+ ++D ++ +
Sbjct: 104 -----------LVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 1676 SGAAQGLSEVLAALGTVY------FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSL 1727
+ L + + +IL I++ S VR L +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212
Query: 1728 GVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---- 1781
+ + ++ + + E+ V+ AA G ++ Y T P + A+
Sbjct: 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTI 272
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
+ + N ++ +VE + + + +
Sbjct: 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-------------------------- 306
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSS 1898
Q+ L + + ++K+++P L+N L
Sbjct: 307 ------------------FPQSPLQSYNFAL----SSIKDVVPNLLNLLTRQNEDPEDDD 344
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
AG L + G +L ++ + + + + R+ + +M K Q
Sbjct: 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
++ + +P+I + D L+V+E+ + D + ++
Sbjct: 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI--------ADSVAESIDPQQHLPGVV 456
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
L GL+ V T I + + LAE + ++
Sbjct: 457 QACLIGLQDHPKVATNCSWTII--------------NLVEQLAEATPSPIYNFYPALVDG 502
Query: 2079 LLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGY 2138
L+ A D + + + +A + + E +++ + ++ +
Sbjct: 503 LIGAANRIDNEFNA--RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 2139 FYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198
L + N+++ L ++ S S+ A + + +++
Sbjct: 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM------------GLFFRLLEK 608
Query: 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIE 2258
S + + G K L+ P L+ L + + A+G I
Sbjct: 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS-ITAVGFIADIS 667
Query: 2259 VTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
+ E+ + + + L ++I + ++K A+LS I G P+L +
Sbjct: 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727
Query: 2318 FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV- 2376
+ A K+ EA+L A G+
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKV-------------------------LEAVLDAYVGIV 762
Query: 2377 --LKHAGKSVSSAVKI---RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431
L +++ V + V +D + +D +A ++G ++ DG +
Sbjct: 763 AGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
Query: 2432 QE 2433
+
Sbjct: 823 GQ 824
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.2 bits (214), Expect = 2e-17
Identities = 91/786 (11%), Positives = 214/786 (27%), Gaps = 76/786 (9%)
Query: 1265 KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL 1324
+ S+ + L + + F G ++ L ++ K+ + L + N
Sbjct: 22 RLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81
Query: 1325 SPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384
+ + EA + + S + AA +A + + + +
Sbjct: 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD-IELPHGAWPELMKIMV 140
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-----VAFSDQVVAVREA 1439
+ + +LLA +CE + V +L+ ++ AVR A
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200
Query: 1440 AECAARAMMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
A A + + ++ + + + + + ++ L + +
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260
Query: 1495 QCLPKIVPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKN--------------------P 1533
+ + + LT + + KV S + +
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320
Query: 1534 EIASLVPTLLMGLTDPN-----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588
I +VP LL LT N D S+ + V
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
++AA + + Y+ LP + ++ D +V+ A IG +
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440
Query: 1649 GMGE-----ENFPDLVSWLLDALKSDNSNVERSGA-----AQGLSEVLAALGTVYFEHIL 1698
+ E ++ P +V L L+ + L+E + ++ ++
Sbjct: 441 SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500
Query: 1699 PDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
+I + R + + + ++D L +
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
+ +L + I + + L+G + + +
Sbjct: 561 LT----LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED 616
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876
A + G+ + L L + V V A+ I +
Sbjct: 617 DVFYAISALAASLGKGFEKYL-----ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671
Query: 1877 KTLKEIMPVLMNTLISSLASSSSER--RQVAGRALGELVRKLGE---RVLPSIIPILSRG 1931
+ + +MN L +++ ++ R + G++ +G L I+ +
Sbjct: 672 EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731
Query: 1932 LKDPSASR-----------RQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALCDSI 1978
+ + V ++A L ++ + I D
Sbjct: 732 QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ 791
Query: 1979 LEVRES 1984
L ++
Sbjct: 792 LYSEDA 797
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.1 bits (180), Expect = 2e-13
Identities = 97/708 (13%), Positives = 218/708 (30%), Gaps = 77/708 (10%)
Query: 1135 LFKALSHSN-YNVRLAAAEALATALDEYP---DSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
+ NV+ A+ AL + ++ S + + ++ +
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+A +L + + + + ++ A + +V+ I+ K+
Sbjct: 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
+ A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTI--ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
+++ V + L+ L + +D + D + A L + G
Sbjct: 317 FALSSIKDVVPNLLNLLTRQNEDP-------------EDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAF 1429
L+ E ++ + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEPVL---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
+DQ + V+E + ++ Q + V+ + L GL+D S ++
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQVGSVIKN------- 1532
+ A S + ++ D +++ +AL + +
Sbjct: 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540
Query: 1533 -------PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL-------ALLV 1578
++ + LT + + L + T + L+
Sbjct: 541 SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
++ SA + + + + + K Y+ P + K L V
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASL--GKGFEKYLETFSPYLLKALNQVDSPVSIT 658
Query: 1639 AARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYF 1694
A I + + E+ +++ L + + N+ E + ++ + +G F
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-F 717
Query: 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754
L DI+ C + P + ++ +Y +VL A+LD +
Sbjct: 718 IPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
Query: 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
D + Y T + ED +++V L+GD+
Sbjct: 767 DK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 9e-05
Identities = 83/688 (12%), Positives = 193/688 (28%), Gaps = 64/688 (9%)
Query: 883 SQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVD 942
Q +LV + +L + + G + E + L + + I + E +
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM------EREGE 221
Query: 943 SDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF--TFVFPIIERIL--LSPK 998
+ + V A E + + L + + ++ + + + K
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 999 RTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNE 1058
+ + + + + S L + S + + + LN L + E
Sbjct: 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341
Query: 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE 1118
+ A + V + A S+ + +
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401
Query: 1119 DIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIR 1178
+ Y ++ + V+ A + D +SI L +
Sbjct: 402 KVQRTYYVHQALPSI--LNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQA 458
Query: 1179 DIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM----TFLISRALADTNADVRG 1234
+ D+ I + A+ + + + D + R
Sbjct: 459 CLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518
Query: 1235 RMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL------VREGVVIFTG 1285
+A +++ + + + L + S +E ++E
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578
Query: 1286 ALAKHLAKDDPKVHAVVDKLLDV-----LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVS 1340
LA + K V V D L+ + S ++ V +S L S+ +
Sbjct: 579 VLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638
Query: 1341 RLLDQLMKS--DKYGERRGAAFGLAGVVKGFGISSLKKY--GIAATLREGLADRNSAKR- 1395
L+K+ A G + ++Y + L + +++ N+ +
Sbjct: 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698
Query: 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455
+ L F + +G F PY+ ++ L + A + + A ++ +
Sbjct: 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVL-----EA 753
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPK 1514
V ++ GL DK P+ L + I + +V D
Sbjct: 754 VLDAYVGIVAGLHDK-------------------PEALFPYVGTIFQFIAQVAEDPQLYS 794
Query: 1515 VQSAGQTALQQVG---SVIKNPEIASLV 1539
+ + A+ +G ++ + I
Sbjct: 795 EDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (327), Expect = 8e-31
Identities = 125/904 (13%), Positives = 272/904 (30%), Gaps = 107/904 (11%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 1165 IQGSLSTLFSL-------YIRDI---GLGGDNVDAGWLGRQGIALALHSAADV-LRTKDL 1213
I+ + +++ LG + + + A +
Sbjct: 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYR-----PSSASQCVAGIACAEIPVNQW 126
Query: 1214 PVIMTFLISRALA-DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
P ++ L++ ++ ++ L A I + + + + EE
Sbjct: 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
Query: 1273 YDLVREGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ V+ + + + H ++ + + P V+ A L +M
Sbjct: 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246
Query: 1330 SMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ L +++ K A G+ + + ++ +A E
Sbjct: 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGI----EFWSNVCDEEMDLAIEASEAAE 302
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV----AVREAAECAA 1444
E + + Y++ +L L + +AA
Sbjct: 303 Q----------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPKIVPK 1503
+ + V VLP + + +++ WR + ++V G + P QL + + +P
Sbjct: 353 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412
Query: 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLD 1558
L E++ D V+ + ++ ++ I A L+ L+ GL+
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW 472
Query: 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618
A L +K + +
Sbjct: 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR--PDGHQNNLRSSAYE 530
Query: 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 1678
L+ VK D P V+ + L + + S + N +S
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERL------QQVLQMESHIQSTSDRIQFNDLQSLL 584
Query: 1679 AQGLSEVLAALGTVYFEHILPDIIRNC------SHQRASVRDGYLTLFKYLPRSLGVQFQ 1732
L VL + I ++ + + V++ L L LG +F
Sbjct: 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644
Query: 1733 NYLQQVLPAILDGLADENES-VRDAALG-------AGHVLVEHYATTSLPLLLPAVEDGI 1784
Y++ P + GL + E V AA+G A + + + LLL + +
Sbjct: 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-- 702
Query: 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844
N + ++ + + GD+ + G + + ++ L + + +
Sbjct: 703 ENVHRSVKPQILSVFGDIALAI----------------GGEFKKYLEVVLNTLQQASQAQ 746
Query: 1845 VLAALYMVRSDVSLSVRQAALHVWKTIV-------ANTPKTLKEIMPVLMN-----TLIS 1892
V + Y D +R++ L + IV N + + P + I+
Sbjct: 747 VDKSDY-DMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805
Query: 1893 SLASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQGVCIG 1946
+ A +G+L G+ VL P I +L+ G + + +
Sbjct: 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865
Query: 1947 LSEV 1950
E+
Sbjct: 866 TKEL 869
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.0 bits (219), Expect = 5e-18
Identities = 103/830 (12%), Positives = 259/830 (31%), Gaps = 106/830 (12%)
Query: 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQL 1481
+L + A++C A +++ ++P L+ + + K+S+++
Sbjct: 94 YVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 1482 LGAMA-YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--------N 1532
+G + P+QL +I+ + + + P A + + ++
Sbjct: 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA-ATNALLNSLEFTKANFDKE 212
Query: 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRERS 1589
E ++ + P+ + + L + ++ L I ++
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
E + + N+C D + + E + P + A A+ L+
Sbjct: 273 DEVALQGIEFWSNVC-------DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV-- 323
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR 1709
++ + D+ N A L + H+LP I + +
Sbjct: 324 ---PILTQTLTKQDENDDDDDWNP-CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD 379
Query: 1710 ASVRDGYLTLFK-YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768
RD + F L Q + + Q +P +++ + D + VRD A + E
Sbjct: 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 1769 ATTSLP-LLLPAVEDGIFN---DNWRIRQSSVELLGDLLFKV--AGTSGKALLEGGSDDE 1822
++ + L + + R+ + L A E +
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499
Query: 1823 GASTEAHGRAIIEVLGR--DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880
+S E + ++E R +N + ++ Y ++ + + + + L+
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG--------ERVLPSIIPILSRGL 1932
+++ + + +S ++ + + L ++RK+ + V+ S++ +
Sbjct: 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFST 1991
+ + + + L +M+ P + L + + +V +A
Sbjct: 620 GSGGVQEDALMAVS---TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1992 LFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048
L ++ DE++ LL L ++ SV+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHR----------SVKPQIL------------ 714
Query: 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 2108
G +A G +L +L L A + + E
Sbjct: 715 ------SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RE 763
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168
+ +++G+ +Q ++ + ++S + + D D T
Sbjct: 764 SCLEAYTGIVQGLKGDQENVHPDVMLVQPRV------------EFILSFIDHIAGDEDHT 811
Query: 2169 --TVAAAWEALSRVVASVPKEV------QPSYIKVIRDAISTSRDKERRK 2210
VA A + + + K+V +P +++ + S+ + +
Sbjct: 812 DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRR-SKTNKAKT 860
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 7e-04
Identities = 42/354 (11%), Positives = 96/354 (27%), Gaps = 86/354 (24%)
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
L+ +S E A ++ L+ + + L
Sbjct: 7 LEKTVSPDRLELEAA------------QKFLERAAV----------------ENLPTFLV 38
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK-LSALSTRVDPLVGD 2353
LS ++ G + R +A L + L++ +
Sbjct: 39 ELSRVLANPGNSQ--------------------VARVAAGLQIKNSLTSKDPDIKAQYQQ 78
Query: 2354 LLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAA 2412
++ + ++ +L L + + SA+
Sbjct: 79 RWLAIDANARREVKNYVLHTL----------------------------GTETYRPSSAS 110
Query: 2413 SILG-IMSQCMEDGQLADLLQELLNLASSP--SWAARHGSVLVFATFLRHNPSAISMSPL 2469
+ I + Q +L+ +L+ ++P + + ++ + +
Sbjct: 111 QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ-LQDK 169
Query: 2470 FLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 2527
IL + ++ E ++ A+T AL L ++ + I+ V A
Sbjct: 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLN-SLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 2528 DSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECLKDGSTPVRLAAERC 2580
+ VR AL L + + ++ E +K V L
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 5e-22
Identities = 97/665 (14%), Positives = 206/665 (30%), Gaps = 110/665 (16%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+ L+ L ++ + + +S++ L +A + + +++P LT+ + D V A
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDE-VLLAL 68
Query: 1520 QTALQQVGSVIKNPEIA-SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSL 1574
L +++ PE L+P L T + SL + + ++A
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA--- 125
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
VP+V R ++ A + P+ L + + D P
Sbjct: 126 -HFVPLVKRLAGGDWFTSRTSACGLFSVCY-----PRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 1635 VRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
VR AA +G + + +N +++ + + +V ++
Sbjct: 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239
Query: 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 1753
++P + + + S R Y+ K+ V + ++PA + + D V
Sbjct: 240 EALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1754 RDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1800
R AA E+ + + +LP +++ + + N ++ + ++
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1801 -DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
+ + + L + + + R +L A+ + D
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-E 1918
VR A + + + L + ++ L R+ A L +LV K G E
Sbjct: 418 VRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475
Query: 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978
+IIP + DP+ R ++ + G+
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT------------------ 517
Query: 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038
++PT+L D + +VR
Sbjct: 518 -----------------------KHMLPTVLRMAGD------------PVANVRFNV--- 539
Query: 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098
A +L + + + P L D D+DV+ A+EA
Sbjct: 540 ---------------AKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Query: 2099 ETVTL 2103
++L
Sbjct: 583 TVLSL 587
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (239), Expect = 1e-20
Identities = 102/619 (16%), Positives = 201/619 (32%), Gaps = 53/619 (8%)
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
A L + L + + R ++ + LG E ++LP L D+ + A
Sbjct: 13 AVLIDELRNEDVQLRLN-SIKKLSTIALALG--VERTRSELLPFLTDTIYDEDEVLLALA 69
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPK 1499
E + V +LP L + + +V+ L A++ +P L
Sbjct: 70 EQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV- 128
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
P + + +++ + + A L +D + +
Sbjct: 129 --PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L + ++P+ + + A + N+ L+ + L
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEAL 242
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++P +++ D VR + A L + +G E + L D R+ A+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 1680 QGLSEVLAALGTVYFEHILPDIIRNCSHQRA---SVRDGYLTLFKYLPRSLGVQFQNYLQ 1736
+ E L E+++ I C + + + S + N ++
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSS 1795
+LP L L DE VR + + E LLPA+ + + WR+R +
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RS 1854
+E + L LG + +E L +L M
Sbjct: 423 IEYMPLL-------------------------------AGQLGVEFFDEKLNSLCMAWLV 451
Query: 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
D ++R+AA K +V K + ++ +++ + R + L
Sbjct: 452 DHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509
Query: 1915 KLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
G+ + ++P + R DP A+ R V L ++ S L E+ P +
Sbjct: 510 VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKL 566
Query: 1974 LCDSILEVRESAGLAFSTL 1992
D ++V+ A A + L
Sbjct: 567 TQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.9 bits (234), Expect = 5e-20
Identities = 101/665 (15%), Positives = 205/665 (30%), Gaps = 93/665 (13%)
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ LI L + + R + + L + LG ER ++P L+ + D V +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-----VLL 66
Query: 1946 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005
L+E QL +F + G + + ++
Sbjct: 67 ALAE--------QLGTFTTLVG-----------------------------GPEYVHCLL 89
Query: 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065
P L ++T VR AV +L A++
Sbjct: 90 PPLESLATVEETV------------VRDKAV------------------ESLRAISHEHS 119
Query: 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125
P +P + G D ++ A + L D+
Sbjct: 120 PSDL--EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 177
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
+RR++A +G F K +L V +I L SD + A EA + +P
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
+E + + + + R L L+P F + A
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRK 2302
E+R A+ + E E S + ++ P I+ + D + + +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD 2362
G L L +K R S + ++ + L+ ++ + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM 2422
+R AI+ + + G ++ S+ + +R +A S L + +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 2423 -EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2542 SVAKA 2546
++ A
Sbjct: 584 VLSLA 588
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 4e-18
Identities = 73/530 (13%), Positives = 153/530 (28%), Gaps = 21/530 (3%)
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
L +A G +LP L + D+D + +LA++ TLV E V L
Sbjct: 31 IKKLSTIALALGVERT--RSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L + +R + + ++ + + L T+ +A
Sbjct: 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSA 146
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK-KGGPILIPGFCLPKALQPLLP 2232
S V V+ + R+ S RR L ++P
Sbjct: 147 CGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIP 206
Query: 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 2292
+F +R A + ++ ++ L+ V+P R + V
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 2293 LSTLSIIIRKGGIALK-PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLV 2351
+ + P L ++ + L + + ++
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326
Query: 2352 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSA 2411
+ + ++ ++ A+ + + G+ GK + + ++ + +S
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 2412 ASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFL 2471
+ LL ++ LA W R + F
Sbjct: 387 LDC--VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-----FD 439
Query: 2472 SILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530
L+ L + D + +REA+T L +L+ I+ V++ D +
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLV-----EKFGKEWAHATIIPKVLAMSGDPNY 494
Query: 2531 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
R L + +++ I L P + D VR +
Sbjct: 495 LHRMTTLFCINVLSEVCGQDITTKHML--PTVLRMAGDPVANVRFNVAKS 542
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 7e-18
Identities = 94/632 (14%), Positives = 188/632 (29%), Gaps = 67/632 (10%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192
+ L L + + +RL + + L+T
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLST------------------------------------ 36
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA-GIMIIDKHGRDN 1251
IALAL + R++ LP + + +V + G G +
Sbjct: 37 ----IALAL--GVERTRSELLPFLTDTI------YDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT 1311
V L P E+ + EE VR+ V A++ + D + H V + +
Sbjct: 85 VHCLLPPLESLA----TVEETV--VRDKAVESLRAISHEHSPSDLEAH-FVPLVKRLAGG 137
Query: 1312 PSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371
+ + S + + + L D RR AA L K +
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197
Query: 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS- 1430
++K I +D + R E V+ L S
Sbjct: 198 DNVKSE-IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
V + +A+ +++ + +L+K + R S A
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSAD 315
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+ + + +I+P + E+++D + V+SA + + + ++ + L +
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
I + L+ + L E + + A + +
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSD 1669
+ L LVD + +R A + L+ G+E ++ +L
Sbjct: 436 EFFDEK---LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
N R ++ + G +H+LP ++R A+VR + + L
Sbjct: 493 NYLH-RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGA 1760
+V P + D++ V+ A A
Sbjct: 552 NS--TLQSEVKPILEKLTQDQDVDVKYFAQEA 581
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.4 bits (212), Expect = 2e-17
Identities = 89/624 (14%), Positives = 195/624 (31%), Gaps = 58/624 (9%)
Query: 1964 DELIP--TIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDT 2020
D L P + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 7 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 66
Query: 2021 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 2080
AL A LG + G ++ +LP L
Sbjct: 67 AL-------------------------------AEQLGTFTTLVG--GPEYVHCLLPPLE 93
Query: 2081 SAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYF 2139
S ++ V+ A E+ ++ +E+ L+K + G + + R S+ L
Sbjct: 94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC 153
Query: 2140 YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199
Y + E + L SD AA L + + S I +
Sbjct: 154 YPRVSSAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210
Query: 2200 ISTSRDKERRKKKGGPILIPGFCLPKA--LQPLLPIFLQGLISGSAELREQAALGLGELI 2257
+++ R + LP+ ++P Q S +R A EL
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII-IRKGGIALKPFLPQLQT 2316
+ + K ++P ++ D +A + Q+
Sbjct: 271 KAVGPEITKTDLVPA---FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327
Query: 2317 TFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376
+ + D+ + V+S+ A + LS + + + + L L E L + +
Sbjct: 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL 387
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
+ + + +L VR++ + +++ + + L L
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447
Query: 2437 -LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
+A R + + + + +I+ ++ + D + R +
Sbjct: 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFC 503
Query: 2496 LGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555
+ L +L +V+ D + VR +L+ + ++
Sbjct: 504 INVLS-----EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQ 556
Query: 2556 ALFGPALAECLKDGSTPVRLAAER 2579
+ P L + +D V+ A+
Sbjct: 557 SEVKPILEKLTQDQDVDVKYFAQE 580
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 2e-12
Identities = 83/574 (14%), Positives = 197/574 (34%), Gaps = 29/574 (5%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDG 1715
++ L+D L++++ + R + + LS + ALG +LP + + +
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775
L + G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA-----LLEGGSDDEGASTEAHG 1830
+ + +W ++S L + + ++ KA SDD A
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSL--SVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888
+ E + + V + + + S+++ L V + +++ ++M
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 1889 TLISSLASSSSERRQVAGRALGELVR-KLGERVLPSIIPILSRGLKDPSASRRQGVCIGL 1947
TL + S R + EL + E ++P +KD A R +
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 1948 SEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
E + + + +++P I+ + D+ V+ + L G E +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN----------AHA 2056
L A D+ + L+ + + V + + L+ +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 2057 LGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGVESLVS 2115
+ LA G F + ++ + D ++ A + + E +++
Sbjct: 426 MPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
++L GD R ++ + I + + +M+ T++ + D + +
Sbjct: 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT--TKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209
+L ++ + S +K I + ++ +D + +
Sbjct: 542 SLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 3e-12
Identities = 86/550 (15%), Positives = 170/550 (30%), Gaps = 38/550 (6%)
Query: 1146 VRLAAAEALATALD-----EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
V LA AE L T EY + L +L ++ + R +
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV-------------RDKAVES 110
Query: 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFE 1260
L + + DL L+ R R + + + L F
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1261 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAV 1320
N + VR G AK L + D ++ ++ + ++V+
Sbjct: 171 NLCSDDTPM------VRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 1321 SSCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ Q + Q++ LV L Q + + R A + K G K +
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
A A+ R A + CE L V ++ +L + V +
Sbjct: 284 PAFQNL--MKDCEAEVRAAASHKVKEFCENLSADCRENV--IMSQILPCIKELVSDANQH 339
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY---CAPQQLSQC 1496
+ A +++ LS K L L + + V+L + Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY 1555
++P + E+ D +V+ A + + + + +L M D +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ L+ + A ++P V + + + ++++E
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC----INVLSEVCGQDI 515
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675
+LP V ++ DP+ VR A+++ + + V +L+ L D +
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Query: 1676 SGAAQGLSEV 1685
A + L+ +
Sbjct: 576 YFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 5e-12
Identities = 93/591 (15%), Positives = 193/591 (32%), Gaps = 40/591 (6%)
Query: 1069 KDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYGY 1126
+DV +R LN++K + ++ E E+ L ++D ++ + AE +
Sbjct: 22 EDVQLR---LNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL 78
Query: 1127 DFGTDYSG-----LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIG 1181
G +Y L + VR A E+L E+ S + L R
Sbjct: 79 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH--SPSDLEAHFVPLVKRLA- 135
Query: 1182 LGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGI 1241
W + A L S + + + +D VR +
Sbjct: 136 ------GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
DNV + ASDE+ + + L + V
Sbjct: 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLA---VEACVNIAQLLPQEDLEALV 243
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAF 1360
+ L S V+ V+ + L +++ E T + LMK + R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASH 303
Query: 1361 GLAGVVKGFGISSLKKYGIAATL--REGLADRNSAKRREGALLAFECLCEKLGR--LFEP 1416
+ + + ++ L + L + + L LG+ E
Sbjct: 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363
Query: 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
+ L L + + + +C + + Q + +LP++++ ED WR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL 420
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNPEI 1535
+ ++ + +A + K+ L D ++ A + L+++ K
Sbjct: 421 AIIEYMPLLAGQLGVEFFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595
A+++P +L DPN + + + + ++P V R + A +
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
A+ + + ++ + P ++K+ D +V+ A A+ L
Sbjct: 539 VAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 3e-09
Identities = 74/540 (13%), Positives = 149/540 (27%), Gaps = 31/540 (5%)
Query: 1004 DDVLQMLYKHMDPLLPL-----PRLRMISVLYHVLGV-VPSYQAAIGSALNELCLGLQPN 1057
D+VL L + + L ++ L + V + +L + P+
Sbjct: 62 DEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 1058 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENI-EVSTSLWIAVHDPEKSVA 1114
++ + + + + +A R E+ D V
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVR 181
Query: 1115 EAAEDIWDRYGYDFGTDY------SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGS 1168
AA + D S +VRL A EA P
Sbjct: 182 RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---D 238
Query: 1169 LSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADT 1228
L L +R + + L ++ +T +P +
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 1229 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288
A + D +S + P + ++ + + L+
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA------LASVIMGLS 352
Query: 1289 KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK 1348
L KD+ H + L + + E +S+ + + + +L +
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408
K+ R + + G+ + +L + RE A + L E
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGL 1467
K G+ E ++P +L D R + K +LP++L+
Sbjct: 471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
Query: 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527
D + + + L + Q ++ P L ++ D V+ Q AL +
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 8e-07
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 10/192 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKE 2207
D++ I+ LI L + D + + LS + ++ + + + + D I D+
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEV 64
Query: 2208 RRK-KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 2266
+ P+ + LLP +R++A L + S L+
Sbjct: 65 LLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLE 124
Query: 2267 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST 2326
+ PL++ + + +++ S+ + A+K L Q F D T
Sbjct: 125 AHFV----PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQY---FRNLCSDDT 177
Query: 2327 RTVRSSAALALG 2338
VR +AA LG
Sbjct: 178 PMVRRAAASKLG 189
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 7e-05
Identities = 32/211 (15%), Positives = 65/211 (30%), Gaps = 13/211 (6%)
Query: 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVF 2453
+VL D + ++D +R+++ L ++ + + L L
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQL 72
Query: 2454 ATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV 2513
TF + L L L+S E+ +R+ + ++L + + +
Sbjct: 73 GTFTTLVGGPEYVHCL----LPPLESLATVEETVVRDKAVESLRAISHE------HSPSD 122
Query: 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPV 2573
+ +V L R + L + P A D + V
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGL--FSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 2574 RLA-AERCAVHAFQLTRGIIYSRSTKIYNRL 2603
R A A + A L + S +++ L
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEIIPMFSNL 211
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 9e-19
Identities = 60/414 (14%), Positives = 131/414 (31%), Gaps = 42/414 (10%)
Query: 1633 PEVRSVAARAIGSLIR---------------GMGEENFPDLVSWLLDALKSDNSNVERSG 1677
R A I + + + ++ +++L L ++ S
Sbjct: 50 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--RPSS 107
Query: 1678 AAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733
A+Q ++ + A V L + N + + Q Q+
Sbjct: 108 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 167
Query: 1734 YLQQVLPAILDGLADENES--VRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFN 1786
++L AI+ G+ E S V+ AA A +E + V +
Sbjct: 168 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 227
Query: 1787 DNWRIRQSSVELLGD-------LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839
+ R+R ++++ L + G + A+ + G +
Sbjct: 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287
Query: 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899
++ + + + + + H K + L I+ + +
Sbjct: 288 EEMDLAI------EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341
Query: 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959
+ AG L L + ++P ++P + +K+P R + ++ SQL
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401
Query: 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + +PT+ + D + VR++A + + AI D + LL L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 1e-16
Identities = 61/461 (13%), Positives = 141/461 (30%), Gaps = 34/461 (7%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 11 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 70
Query: 1165 IQGSLSTLFS-------LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 1217
I+ + +++ L + A + P ++
Sbjct: 71 IKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELI 129
Query: 1218 TFLISRALAD-TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276
L++ + ++ L A I + + + + EE + V
Sbjct: 130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 189
Query: 1277 REGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--- 1330
+ + + + H ++ + + P V+ A L +M
Sbjct: 190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249
Query: 1331 -MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
M+ + + + MKSD + V + +
Sbjct: 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-------------MDLAIEA 296
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
+A++ + + + P + Q L D +AA + +
Sbjct: 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVL 1508
V VLP + + +++ WR + ++V G + P QL + + +P L E++
Sbjct: 357 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTD 1548
D V+ + ++ ++ I + LL L +
Sbjct: 417 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 9e-16
Identities = 63/452 (13%), Positives = 144/452 (31%), Gaps = 33/452 (7%)
Query: 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135
L +L D A++ E + + L L N R ++
Sbjct: 2 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVAAGLQ 59
Query: 2136 IGYF-----------YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS- 2183
I Y+ L + A + ++ +++ ++A + ++ + +
Sbjct: 60 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 119
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPIFLQG 2237
+P P I + ++ E K+ + I L +L +QG
Sbjct: 120 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQG 179
Query: 2238 LIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295
+ S ++ A L +E T KE ++ +V+ A L
Sbjct: 180 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 239
Query: 2296 LSIIIRKGGIALKPFLPQLQTT-FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354
L I+ ++ ++ I+ ++ V + + +
Sbjct: 240 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 299
Query: 2355 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 2414
+ + + AL+ ++ + + + + DD + +A
Sbjct: 300 AEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKAAGVC 350
Query: 2415 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 2474
L +++ C ED + +L + +P W R +V+ F L P + PL + +
Sbjct: 351 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAM 409
Query: 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQS 2506
L +KD +R+ + +GR+ ++
Sbjct: 410 PTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 3e-10
Identities = 65/492 (13%), Positives = 133/492 (27%), Gaps = 53/492 (10%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRR 1940
E++ +L T+ S + A + L + L + +L+ A R
Sbjct: 1 ELITILEKTV-----SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--R 53
Query: 1941 QGVCIGLSEVMA---SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ + + K+Q + R + + +L+ +
Sbjct: 54 VAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE--------TYRP 105
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
A + + +Q + + + + P+ + L A
Sbjct: 106 SSASQCVAGIACAEIPVNQWPELIPQLVANVTN-------PNSTEHMKESTLEAIGYICQ 158
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
E N L I+ + +++ + + + + +
Sbjct: 159 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 218
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST----LIVLLSDSDSTTVAAA 2173
Q R + K LY M I +
Sbjct: 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 278
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233
E S V E ++ P F ALQ L+PI
Sbjct: 279 IEFWSNVCDEEMDLAI--------------EASEAAEQGRPPEHTSKFYAKGALQYLVPI 324
Query: 2234 FLQGLISGSAELREQ--AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
Q L + + + ++ ++P P I+ W+ + A
Sbjct: 325 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 384
Query: 2292 ILSTLSIIIRK-GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-------AL 2343
+ I+ LKP + Q T I+ ++D + VR +AA +G++
Sbjct: 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 444
Query: 2344 STRVDPLVGDLL 2355
+ PL+ L+
Sbjct: 445 DVYLAPLLQCLI 456
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-07
Identities = 57/474 (12%), Positives = 130/474 (27%), Gaps = 60/474 (12%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267
++LP + L R LA+ R+ AG+ +N L K
Sbjct: 27 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGL----------------QIKNSLTSKD 68
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPL 1327
D + + D V + + S C++ +
Sbjct: 69 PDIK-------------AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 115
Query: 1328 MQS------MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+ + P LV+ + + A + + + + A
Sbjct: 116 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 175
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
++ + S + A A E E ++ ++ A VR A
Sbjct: 176 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235
Query: 1440 AECAARAMMS----QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495
A +MS + + ++ ++ ++ + +
Sbjct: 236 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 295
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
+ + ALQ + P + + D + +
Sbjct: 296 ASEAAEQGRPPEH-----TSKFYAKGALQYL-----VPILTQTLTKQDENDDDDDWNPCK 345
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ + + + ++P + ++ + A G + EP + P
Sbjct: 346 AAG-VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKP 403
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-----LVSWLLD 1664
+ +P + +++ DP VR AA +G + + E D L+ L++
Sbjct: 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (151), Expect = 6e-10
Identities = 98/806 (12%), Positives = 238/806 (29%), Gaps = 107/806 (13%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
+++ ++ AI S+ + +P L+S L L +D+ G +
Sbjct: 92 PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVT-NKGVLTVAHSI 150
Query: 1686 LAALGTVY---------------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
++ F ++++ Q + + ++
Sbjct: 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN---------NKASLNI 201
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
+ L ++ D + + + G + Y + S PLL E + +
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIK 261
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
++ S EL+ + G + V +L
Sbjct: 262 VKSSIQELVQLYTTRYEDVFGPMI-------NEFIQITWNLLTSISNQPKYDILVSKSLS 314
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS------------SLASSS 1898
+ + + + + T + + + + + S +
Sbjct: 315 FLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDT 374
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIP----ILSRGLKDPSASRRQGVCIGLSEVMASA 1954
RR+ L EL K V + + + + DPS + + +
Sbjct: 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAI 434
Query: 1955 GKS-------------QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001
+ ++ F + I T+ + +R A T +
Sbjct: 435 NGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL 494
Query: 2002 DEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGA 2059
E++P L L+ D+ A +++IL++R + P + + ++
Sbjct: 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNL 553
Query: 2060 LAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119
+A + G + L+ ++ V ++++ + + + + + +
Sbjct: 554 IALILKHGSSPEKLAENEFLMRSI----FRVLQTSEDSIQPLFPQL----LAQFIEIVTI 605
Query: 2120 GVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAW 2174
+ + ++ Y + + LVD T+ V
Sbjct: 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665
Query: 2175 EALSRVVASVPKEVQPSYIKVIRDAISTSRDK-------ERRKKKGGPILIPGFCLPKAL 2227
+ A++P+ ++P ++ + + + K + P L
Sbjct: 666 AFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------L 719
Query: 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI-RIIGDRFPW 2286
P+L IF Q LI+ A L L ++ + L+ ++ I L+ R+ +
Sbjct: 720 VPVLGIF-QRLIASKAYEVHGFDL-LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTER 777
Query: 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQ---------TTFIKCLQDSTRTV-RSSAALA 2336
VK + I + G L F+ ++Q I L + R A +
Sbjct: 778 YVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIG 837
Query: 2337 LGKL----SALSTRVDPLVGDLLSSL 2358
+ + ++ L+ ++S+
Sbjct: 838 VLNMVINGQFFQSKYPTLISSTMNSI 863
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (141), Expect = 8e-09
Identities = 83/838 (9%), Positives = 229/838 (27%), Gaps = 90/838 (10%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + I+ + +++ A + + P LL + + ND+ +
Sbjct: 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGV 143
Query: 1796 VELLGDLL----FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851
+ + + ++ D A + + E + ++ N+ +
Sbjct: 144 LTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILF 203
Query: 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911
V + + + + P+ ++ + V M L+ S+
Sbjct: 204 DVLLVLIKL------YYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHAS 257
Query: 1912 LVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-------SQLLSFMD 1964
++ K+ + + +R + + I + + + + + S+ LSF+
Sbjct: 258 VLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLT 317
Query: 1965 ELIPTIRT-------ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT 2017
+ + + ++I E + E + L + D
Sbjct: 318 AVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTR 377
Query: 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILP 2077
D LK++ V L + + +
Sbjct: 378 RRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK--------------FKD 423
Query: 2078 ALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
+ ++ + T L+ + ++ L +R + I
Sbjct: 424 LYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY 483
Query: 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197
F + ++ L L + A + +++ ++ + +
Sbjct: 484 TFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKIL-TIRESNTSPAFIFHK 539
Query: 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257
+ IS L+ L+ + L+ S + + +
Sbjct: 540 EDISN-------------------STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIG----DRFPWQVKSAILSTLSIIIRKGGIALKP-FLP 2312
TSE S++ + I I+ + + ++ I+ P +
Sbjct: 581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD 640
Query: 2313 QLQTTFIKCLQDSTRTVRSSAALALGKL----SALSTRVDPLVGDLLSSLQVSDAGIREA 2368
+ TF+ + + + + + + + PL LL+ G A
Sbjct: 641 SMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPA 700
Query: 2369 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA 2428
+ LK +K V + + + L+ V +L + ++ +L
Sbjct: 701 VTRLLKSFIKTDSSIFPDLVPV--LGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLR 756
Query: 2429 DLLQELL-----NLASSPSWAARHGSVLVFATF-LRHNPSAISM------SPLFLSILDR 2476
++++ L +S + + F + + LF I
Sbjct: 757 PYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGN 816
Query: 2477 LKSSLKDEKFP---LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSE 2531
+ R+ + + ++++ T++ + S++ S
Sbjct: 817 FIIT-TLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIA 873
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (140), Expect = 1e-08
Identities = 70/670 (10%), Positives = 174/670 (25%), Gaps = 81/670 (12%)
Query: 1854 SDVSLSVRQAALHVWKTIVAN-------TPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906
+++ LS R A +K + + ++ ++ + S + + G
Sbjct: 47 TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIG 106
Query: 1907 RALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966
A+ + P+++ L+ L + +GV + +
Sbjct: 107 EAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166
Query: 1967 IPTIRTALCDSILEVRESA-GLAFSTLFKSAGMQAIDEIVPT---LLHALEDDQTSDTAL 2022
I + L + ++ + A + + +++ L + +
Sbjct: 167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226
Query: 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082
D ++ + + L L L +V + ++ +
Sbjct: 227 DNIQVGMGI-----FHKYLSYSNPLLEDPDETEHASVLIKVKS-----SIQELVQLYTTR 276
Query: 2083 MGDDDMD-VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141
D + + +T + ++ + LVS+ L + +
Sbjct: 277 YEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL-----------TAVTRIPKY 325
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201
N+ +I+ V +E + ++++ S R A +
Sbjct: 326 FEIFNNESAMNNITEQIILPNVTLREEDVEL-FEDDPIEY--IRRDLEGSDTDTRRRACT 382
Query: 2202 TSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE--LREQAALGLGELIEV 2259
+ + K + L + Q + S ++ L
Sbjct: 383 DFLKELKEKNEV-------LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN 435
Query: 2260 TSEQS-----------LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
+ + + +F P + AI I K
Sbjct: 436 GNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK----YIYTFRNQLTK 491
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368
L +L LQ V + AA+ + K+ + + E
Sbjct: 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST---EI 548
Query: 2369 ILTALKGVLKHAGKSVSSA-VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
+L L ++ G S + + ++ +D ++ +L Q
Sbjct: 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL---------AQF 599
Query: 2428 ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMS------PLFLSILDRLKSSL 2481
+++ + S+P H + L + P FL++
Sbjct: 600 IEIVTIMAKNPSNPR--FTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF 657
Query: 2482 KDEKFPLREA 2491
F +
Sbjct: 658 IPYVFQIIAF 667
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (106), Expect = 1e-04
Identities = 53/506 (10%), Positives = 147/506 (29%), Gaps = 52/506 (10%)
Query: 1232 VRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL 1291
R + + +K+ ++ + ++++ SD K ++ + ALA +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436
Query: 1292 AKDDPKVHAVVDKL-------------LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ V + + L L N P ++ + +
Sbjct: 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE 496
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVK----------GFGISSLKKY------GIAAT 1382
+ +L +++D+Y AA + ++ F + + A
Sbjct: 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---------SDQV 1433
+ + + E + + + + +P Q+L +
Sbjct: 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493
E+ Q V ++P+ L + Q++ + +
Sbjct: 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIP 676
Query: 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQ--TALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
P P L + + + + + + + S I + L + + +
Sbjct: 677 ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYE 736
Query: 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
+ L + P + + ++ + L+ E K + + S
Sbjct: 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796
Query: 1612 DMIPYI-----GLLLPEVKKVLVDPIPEV-----RSVAARAIGSLIRGMGE--ENFPDLV 1659
+I +I GL ++ +P + R +A + +++ +P L+
Sbjct: 797 FLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLI 856
Query: 1660 SWLLDALKSDNSNVERSGAAQGLSEV 1685
S ++++ S+ + ++
Sbjct: 857 SSTMNSIIETASSQSIANLKNDYVDL 882
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 0.001
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 9/164 (5%)
Query: 2317 TFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375
T K L +S + ++ L +L L+ +++S + R A K
Sbjct: 6 TVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLL-HVIASTNL-PLSTRLAGALFFKN 63
Query: 2376 VLKHAGKS------VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 2429
+K + + + + L+ ++++V + ++ +
Sbjct: 64 FIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPT 123
Query: 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 2473
LL +L + S+ G + V + + LFL I
Sbjct: 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI 167
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (131), Expect = 7e-08
Identities = 69/540 (12%), Positives = 145/540 (26%), Gaps = 75/540 (13%)
Query: 2076 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVE 75
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187
R +A + + + L I L+ +L + + A L +
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL------- 128
Query: 2188 VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELRE 2247
+ G + L L + L + +
Sbjct: 129 ---------------------------LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 2248 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307
L L E L L+ I+ ++ L ++
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIRE 2367
L D ++ + + L LS +T+ + + G L + +Q+ +
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 281
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV------------YHDDDHVRVSAASIL 2415
+ A + + + + + ++ LV S
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 2416 GIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR---HNPSAISMSPLFLS 2472
+L L ++ L PS + + L N + +
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401
Query: 2473 ILDRLKSSLKDEKF-------------PLREASTKALGRLLLHQIQSGPANTTVVV--DI 2517
++ L + +D + +R LH + N V+ +
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 461
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
+ V L+ ++R A L +A+ +A + L E L + V A
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (96), Expect = 0.001
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 2477 LKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL-HDDSSEVRRR 2535
L L DE + + + +L + + +++++V + + + E R
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 2536 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586
L +++ + + + PAL + L V A +
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 4e-05
Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 34/271 (12%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
L D R ++ AR L +G + + ++ DK + + +LG
Sbjct: 24 LFRLLDDHNSLKRISS---ARV----LQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544
+ + + L D V++ + Q +V +
Sbjct: 77 I-KICKKCEDNVFNILNNMA---LNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQI 131
Query: 1545 GLTDPNDHTKYS-------------LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
D + + + + + +L+ D + A +++ +
Sbjct: 132 TAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD 191
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ Q + +L + L V A G L
Sbjct: 192 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELGD--- 246
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
L+ L L + N + A L
Sbjct: 247 ----KTLLPVLDTMLYKFDDNEIITSAIDKL 273
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 44.1 bits (102), Expect = 1e-04
Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 48/311 (15%)
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QC +L +L D + + + LQ G V + +D N
Sbjct: 11 GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN 63
Query: 1551 DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ IL Q + +L + L ++SA + A + C
Sbjct: 64 YIRRDIGAFILGQIKICKKCEDNVFNIL---NNMALNDKSACVRATAIESTAQRCKKNPI 120
Query: 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669
I + D VR A A + N + L++ LK
Sbjct: 121 YSPKIVEQ------SQITAFDKSTNVRRATAFA-------ISVINDKATIPLLINLLKDP 167
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729
N +V I + N + V + ++
Sbjct: 168 NGDVRN----------------WAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG 211
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789
++VL + D L V D + A E T LP+L + D+
Sbjct: 212 LSYRKDKRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDN 263
Query: 1790 RIRQSSVELLG 1800
I S+++ L
Sbjct: 264 EIITSAIDKLK 274
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.002
Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 29/270 (10%)
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
EL + + D+ + R SSA ++ + + I SD +
Sbjct: 23 ELFRLLDDHNSLKRISSARVLQLR----------GGQDAVRLAIEFCSDKNYIRRDIGAF 72
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK---------KKGGPILIPG--FCLP 2224
L ++ + K+ + + ++ + + R K PI P
Sbjct: 73 ILGQIK--ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQ 130
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ + + ++A + L + ++ + D
Sbjct: 131 ITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR 190
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
V+ + I ++ + L+ + TV A G+L
Sbjct: 191 DCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELG--D 246
Query: 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALK 2374
+ P++ +L D I + + LK
Sbjct: 247 KTLLPVLDTMLYKFD--DNEIITSAIDKLK 274
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (89), Expect = 0.004
Identities = 25/268 (9%), Positives = 63/268 (23%), Gaps = 32/268 (11%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
+ L D R S+A L V + + R+ L
Sbjct: 25 FRLLDDHNSLKRISSARVLQLRGG-----QDAVRLAIEFCSDKNYIRRDIGAFIL----- 74
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
+ + V+++L ++ +D + A ++++ A
Sbjct: 75 -GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITA 133
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS--------ILDRLKSSLKDEKFPLRE 2490
S R + + + ++ L + +
Sbjct: 134 FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 193
Query: 2491 ASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA 2550
+ + +L+ + L + V + A + + +
Sbjct: 194 VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGEL--GDKTL 249
Query: 2551 IMVHVALFGPALAECLKDGSTP-VRLAA 2577
+ P L L + +A
Sbjct: 250 L--------PVLDTMLYKFDDNEIITSA 269
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2612 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.98 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.96 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.96 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.93 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.61 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.6 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.47 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.28 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.24 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.18 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.96 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.95 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.78 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.71 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.68 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.53 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.84 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.81 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.77 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.23 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.91 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.69 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.9 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.01 | |
| d2b6ca1 | 213 | Hypothetical protein EF3068 {Enterococcus faecalis | 82.72 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 81.12 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-41 Score=509.39 Aligned_cols=1023 Identities=16% Similarity=0.186 Sum_probs=733.1
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH----HHHHHHhcc----cccc
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTT----FVNT 1568 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~----al~~L~~~~----~~~~ 1568 (2612)
..++++.++++|+|++++||..|++||+.++..++++.+..+++.|+..+.+++...|. ++..+...- ....
T Consensus 43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~ 122 (1207)
T d1u6gc_ 43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122 (1207)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccch
Confidence 46789999999999999999999999999999998888899999999988888777763 444443311 1111
Q ss_pred CChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1569 VDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~-d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
........+++.+...+. ..++.+|..+.++++.+....+. .+.++.+.+++.+...+.++.+.||..|+.+++.++
T Consensus 123 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~--~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~ 200 (1207)
T d1u6gc_ 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 200 (1207)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH--hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 223344555666666554 45789999999999999987653 678899999999999999999999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhh
Q 000051 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2612)
Q Consensus 1648 ~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~ 1724 (2612)
..++++.+..+++.+++.+..+.....|..++++++.++...|.. +++.++|.+++.+.+.++.+|+.++.++..+.
T Consensus 201 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~ 280 (1207)
T d1u6gc_ 201 MSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 280 (1207)
T ss_dssp TTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999988889999999988876665556778899999999988864 45788999999999999999999999999999
Q ss_pred hhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHH
Q 000051 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2612)
Q Consensus 1725 ~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~ 1804 (2612)
..++..+.||+..+++.++.++.++.................. .........+.......|..|++|..++++++.++.
T Consensus 281 ~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~ 359 (1207)
T d1u6gc_ 281 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD-GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 359 (1207)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC-------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhh-ccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHH
Confidence 9999999999999999999998865433332222222211111 111122233444455678899999999999998864
Q ss_pred HhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh--------
Q 000051 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-------- 1876 (2612)
Q Consensus 1805 ~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-------- 1876 (2612)
..+ +. +. +....+++.+...+.|.+..||..++.++..+....+
T Consensus 360 ~~~--------------~~---------l~-----~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 411 (1207)
T d1u6gc_ 360 TRH--------------EM---------LP-----EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411 (1207)
T ss_dssp TCC--------------TT---------HH-----HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHH--------------HH---------HH-----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 321 00 01 1223456666667789999999999999988875321
Q ss_pred -----------hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCC--ChhHH
Q 000051 1877 -----------KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP--SASRR 1940 (2612)
Q Consensus 1877 -----------~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~--~~~vR 1940 (2612)
..+..++|.+++.+...+.+.+..+|..+..++..++...+.. ..+.+++.+...+.+. ...+|
T Consensus 412 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~ 491 (1207)
T d1u6gc_ 412 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLK 491 (1207)
T ss_dssp ------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHH
T ss_pred hHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHH
Confidence 2355677888999999999999999999999999999887654 4566677777777754 45678
Q ss_pred HHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----------hhhhhHHHHHH
Q 000051 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----------AIDEIVPTLLH 2010 (2612)
Q Consensus 1941 ~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~----------~~~~ilp~Ll~ 2010 (2612)
..++..++.++..+.+..+.++...+.+.+...+.|+...++..|..+++.+....+.. .+..+++.++.
T Consensus 492 ~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 571 (1207)
T d1u6gc_ 492 IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 571 (1207)
T ss_dssp HHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHH
Confidence 89999999999888888889999999999999999999999999999988887765431 12233333333
Q ss_pred hccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHH
Q 000051 2011 ALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDV 2090 (2612)
Q Consensus 2011 ~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~v 2090 (2612)
.+.+.+... .....+..+++.+....|..+.++++.+++.+.+.+.++. .
T Consensus 572 ~l~~~~~~~----------------------------e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~ 621 (1207)
T d1u6gc_ 572 RLKAADIDQ----------------------------EVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--T 621 (1207)
T ss_dssp HHSCSSSCH----------------------------HHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--H
T ss_pred HHHhcccch----------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchh--h
Confidence 332222110 0111234566667777788888899999999999887654 5
Q ss_pred HHHHHHHHHHhhhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhc-cHHHHHHHHHHHhcCC
Q 000051 2091 QSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDS 2165 (2612)
Q Consensus 2091 r~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~-~~~~il~~L~~ll~d~ 2165 (2612)
|..+..++..+...... +.+..+++.+...+.+.++.+|..++.+++.++...+..+.+ ....++..+..++.+.
T Consensus 622 r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~ 701 (1207)
T d1u6gc_ 622 RLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 701 (1207)
T ss_dssp HHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccc
Confidence 67777778777664432 457788888999999999999999999999999887655544 4566677777788899
Q ss_pred ChhHHHHHHHHHHHHHhhcCcc---ccccHHHHHHHHHHhhhhhh-hhhhcCCc-ccccCCCCC-cCchhhHHHHHHHHh
Q 000051 2166 DSTTVAAAWEALSRVVASVPKE---VQPSYIKVIRDAISTSRDKE-RRKKKGGP-ILIPGFCLP-KALQPLLPIFLQGLI 2239 (2612)
Q Consensus 2166 d~~V~~~a~~aL~~l~~~~~~~---~l~~lv~~l~~~l~~~~~~~-~~~~~~~~-~~l~g~~~p-~~l~~ilp~l~~~L~ 2239 (2612)
|..++..+...+..+.+..+.. ....+++.+...+....... ........ ..+.....+ .....+++.+...+.
T Consensus 702 d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~ 781 (1207)
T d1u6gc_ 702 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVY 781 (1207)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTT
T ss_pred cHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Confidence 9999999999999998776542 23334444433332110000 00000000 000000001 111222333222222
Q ss_pred cC-----CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHh-cCCCCHhHHHHHHHHHHHHHHhcCCCccCchHH
Q 000051 2240 SG-----SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII-GDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2612)
Q Consensus 2240 ~~-----~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l-~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpq 2313 (2612)
+. ........+.+++.+....+ ....+.+..+ +... .....+.++..++.+++.++...+. .+.+.
T Consensus 782 ~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~l~~~----l~~~~~~~~~~~~~~~al~~Lge~~~~~~~---~~~~~ 853 (1207)
T d1u6gc_ 782 SQSTALTHKQSYYSIAKCVAALTRACP-KEGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGHHIDL---SGQLE 853 (1207)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSC-CCSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHHHSCC---CSCTH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH----HHHHhcccchHHHHHHHHHHHHHHHHhccc---cchHH
Confidence 11 23344556777887776665 2333333222 2222 2334577899999999999988775 34567
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHH
Q 000051 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 2393 (2612)
Q Consensus 2314 L~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~ 2393 (2612)
+...+++.++|++++||.+|+.+||.++. .+.+.++|.+++.+.+ +...++..+.++++++...+.....++.+.+|
T Consensus 854 l~~~l~~~l~~~~~~vr~aAa~aLg~l~~--~~~~~~lp~il~~l~~-~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~ 930 (1207)
T d1u6gc_ 854 LKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVGLKPYVENIW 930 (1207)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH--hhHHHHhHHHHHHHhc-CchHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 88999999999999999999999999965 4678899999998865 45678899999999999888776788999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhH---------------------------------HHHHHHH----HHh
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ---------------------------------LADLLQE----LLN 2436 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---------------------------------~~~~l~~----ll~ 2436 (2612)
..|...+.+.++.+|..+++|+|+|+...|..- +.++++. ++.
T Consensus 931 ~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~ 1010 (1207)
T d1u6gc_ 931 ALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLK 1010 (1207)
T ss_dssp HHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999986655421 1222333 345
Q ss_pred hcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhh------------------hccCChhHHHhHHHHHHH
Q 000051 2437 LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS------------------LKDEKFPLREASTKALGR 2498 (2612)
Q Consensus 2437 ~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~------------------~~~~~~~ir~~a~~alg~ 2498 (2612)
.+.+++..+|..+..+|+.++...|..+. ++.+.+++.+... ..|++.++|++|..+++.
T Consensus 1011 ~l~d~~~~vR~~al~~l~~~~~~~p~li~--~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~ 1088 (1207)
T d1u6gc_ 1011 TLEDPDLNVRRVALVTFNSAAHNKPSLIR--DLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYT 1088 (1207)
T ss_dssp HHSSSSTHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHH
Confidence 56788888999999999999998886653 6778888888743 345677899999999999
Q ss_pred HHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcC--Ccchh---
Q 000051 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPV--- 2573 (2612)
Q Consensus 2499 ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~v--- 2573 (2612)
++..+... ..+.+++..++.++.| +.|+|.++..++..++..+|..+.++++.++|++-+.+.- +...|
T Consensus 1089 ~l~~~~~~-----~~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~ 1162 (1207)
T d1u6gc_ 1089 LLDSCLDR-----LDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQE 1162 (1207)
T ss_dssp HHHSSCSS-----SCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHH
T ss_pred HHHHhhhh-----cCHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccCcchhhhh
Confidence 99876533 2578899999999988 4699999999999999999999999999999999998643 33334
Q ss_pred -------hhhHHHHHHHHhcccccchhhhHhhh
Q 000051 2574 -------RLAAERCAVHAFQLTRGIIYSRSTKI 2599 (2612)
Q Consensus 2574 -------k~aae~~~~~~~~~~~~~~~~~~~~~ 2599 (2612)
++++.||+.+|.+++..+..-++.++
T Consensus 1163 ~e~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1195 (1207)
T d1u6gc_ 1163 FEKQDELKRSAMRAVAALLTIPEAEKSPLMSEF 1195 (1207)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCcccChHHHHH
Confidence 45556889999888665433333333
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-37 Score=457.44 Aligned_cols=1073 Identities=16% Similarity=0.175 Sum_probs=753.9
Q ss_pred CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcch
Q 000051 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2612)
Q Consensus 1295 ~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2612)
+...+.+++.++..|.|++++||..+.+|+++++...++. ...+++.++..+... +...|..+..+|..++..++...
T Consensus 40 ~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~ 118 (1207)
T d1u6gc_ 40 DDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPAS 118 (1207)
T ss_dssp TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC---
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCC-chhhhHHHHHHHHHHHHhccccc
Confidence 4446789999999999999999999999999999887654 456777777777655 45789999999999998775322
Q ss_pred h----h---hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000051 1374 L----K---KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2612)
Q Consensus 1374 l----~---~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2612)
. . ...+++.+...+.+..++.+|..++.+++.+...+|..+.++...+++.++..+.++++.||+.|..++..
T Consensus 119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~ 198 (1207)
T d1u6gc_ 119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198 (1207)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1 1 12466667777777778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcHHhHHhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000051 1447 MMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2612)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2612)
++..++...+..+++.+++.+. +..+..++.++.+++.++...+..+.++++.++|.+.+.+++.++++|+.+..++..
T Consensus 199 l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~ 278 (1207)
T d1u6gc_ 199 LVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 278 (1207)
T ss_dssp HTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 9998888877888888888775 456778889999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC---hhHhhHHHHHHhhcC-CCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000051 1526 VGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2612)
Q Consensus 1526 l~~~~~~---~~i~~ivp~Ll~~l~-d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~ 1601 (2612)
+...+++ +++..+++.+.+.+. ||+............ .............+.......+.+|.+|..++++++
T Consensus 279 l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~ 355 (1207)
T d1u6gc_ 279 FVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA---MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 355 (1207)
T ss_dssp HHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhh---hhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 9988764 456777777777765 443222211111110 000011111223333344456789999999999999
Q ss_pred HHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHH
Q 000051 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2612)
Q Consensus 1602 ~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~ 1681 (2612)
.++.. .++.+.++++.++|.+...+.|.++.||..+..+++.+....+........+.... ..... +..
T Consensus 356 ~l~~~--~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~--~~~---- 424 (1207)
T d1u6gc_ 356 AVVST--RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME---QGETP--LTM---- 424 (1207)
T ss_dssp HHHTT--CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---------------CCCH--HHH----
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHH---hhcch--HHH----
Confidence 99874 45677889999999999999999999999999999999887654321111111111 01111 000
Q ss_pred HHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC--hhHHHHHHH
Q 000051 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--ESVRDAALG 1759 (2612)
Q Consensus 1682 L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~--~~VR~~Al~ 1759 (2612)
.....+.+++.+.+.+.+.++.+|..++.++..+....+..+.+|+..+++.+...+.+.. ..+|..++.
T Consensus 425 --------l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~ 496 (1207)
T d1u6gc_ 425 --------LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALS 496 (1207)
T ss_dssp --------HHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHH
T ss_pred --------HHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHH
Confidence 0122345666777778888999999999999999999999999999999999999998754 467888888
Q ss_pred HHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHH
Q 000051 1760 AGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2612)
Q Consensus 1760 al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~ 1835 (2612)
++..+......+ ....+.|.+...+.+.+++++..++..++.+...+...... ......
T Consensus 497 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~---------~~~~~~-------- 559 (1207)
T d1u6gc_ 497 CLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQP---------SSFDAT-------- 559 (1207)
T ss_dssp HHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSC---------CCCCCH--------
T ss_pred HHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccc---------hhhhhH--------
Confidence 888887766554 34557788888889999999999999999888765432110 000000
Q ss_pred HhChhhHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1836 VLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELV 1913 (2612)
Q Consensus 1836 ~Lg~~~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv 1913 (2612)
.....++..+... ..|.+.++|..|+.+++.+....+..+..+++.+++.+...+.+.. .|..+..+++.+.
T Consensus 560 ----~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~r~~a~~~l~~i~ 633 (1207)
T d1u6gc_ 560 ----PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIA 633 (1207)
T ss_dssp ----HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHHH
Confidence 0112223333222 3577889999999999999998888888888999999988887544 6888888888776
Q ss_pred HHhch----hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000051 1914 RKLGE----RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2612)
Q Consensus 1914 ~~~~~----~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al 1989 (2612)
..... ..++.+++.+...+.+.++.+|..++.++..++...++.........+++.+...+.+.+..++..+...+
T Consensus 634 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l 713 (1207)
T d1u6gc_ 634 GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 713 (1207)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHH
T ss_pred HhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHH
Confidence 54322 24677888888889999999999999999999887766555556677788888888999999999998888
Q ss_pred HHHHHHhCh---hhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCC
Q 000051 1990 STLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066 (2612)
Q Consensus 1990 ~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~ 2066 (2612)
+.+.+..+. .....++|.++..+.++.....++..+..++.. +.. .+.
T Consensus 714 ~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~----------------------------l~~-~~~ 764 (1207)
T d1u6gc_ 714 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA----------------------------LVV-TGT 764 (1207)
T ss_dssp HHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHH----------------------------HHT-TCC
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH----------------------------HHh-ccc
Confidence 887654332 234566777776666554444443333332210 000 000
Q ss_pred ChhhhHhhHHHHHHHhcCCC-----CHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCC--CChhHHHHHHHHHHHH
Q 000051 2067 GLNFHLGTILPALLSAMGDD-----DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD--NQASIRRSSAYLIGYF 2139 (2612)
Q Consensus 2067 ~l~~~l~~il~~Ll~~L~~~-----~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~--~~~~vR~~A~~~L~~l 2139 (2612)
-......+++.+.....+. ..........+++.+....+.. ....+..++....+ ..+..|..++.++|.+
T Consensus 765 -~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~ 842 (1207)
T d1u6gc_ 765 -NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKE-GPAVVGQFIQDVKNSRSTDSIRLLALLSLGEV 842 (1207)
T ss_dssp -TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCC-SHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHH
T ss_pred -cccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 0111222333333332221 1223333445555555444333 33444444444432 4567888999999998
Q ss_pred HHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCccccc
Q 000051 2140 YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219 (2612)
Q Consensus 2140 ~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~ 2219 (2612)
....+... .+++...++..+++++++||.+|..+++.+......
T Consensus 843 ~~~~~~~~---~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~--------------------------------- 886 (1207)
T d1u6gc_ 843 GHHIDLSG---QLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--------------------------------- 886 (1207)
T ss_dssp HHHSCCCS---CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH---------------------------------
T ss_pred HHhccccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHH---------------------------------
Confidence 87765433 345667778899999999999999999988654322
Q ss_pred CCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH
Q 000051 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2612)
Q Consensus 2220 g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L 2299 (2612)
..+|.+++.+.+ ++..+.....++..++...+...+.+++..+++.|+..+.+. ++.+|..+..+||.|
T Consensus 887 ---------~~lp~il~~l~~-~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~-~~~vr~~~a~~lg~L 955 (1207)
T d1u6gc_ 887 ---------EYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECA-EEGTRNVVAECLGKL 955 (1207)
T ss_dssp ---------HHHHHHHHHHHS-CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCS-STTHHHHHHHHHHHH
T ss_pred ---------HHhHHHHHHHhc-CchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 223444444432 334556677788888888877788999999988888777664 778999999999999
Q ss_pred HHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cCChh----HHHHHHHHhhhcCCHHHHHHHHHHHH
Q 000051 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-STRVD----PLVGDLLSSLQVSDAGIREAILTALK 2374 (2612)
Q Consensus 2300 ~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-~~~~~----~~l~~Ll~~l~~~d~~vr~~~l~AL~ 2374 (2612)
+...+ ..+++.+.+.+.|+++.+|..++.+++.++.. ....+ ++++.++..+++++..+|..++.+|.
T Consensus 956 ~~~~~-------~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~ 1028 (1207)
T d1u6gc_ 956 TLIDP-------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFN 1028 (1207)
T ss_dssp HHSSG-------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHH
T ss_pred HhcCH-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 86443 23455666788999999999999999988543 33344 44555667788899999999999999
Q ss_pred HHHHhcCCCcChHHHHHHHHHHHHhhcC------------------CCHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Q 000051 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYH------------------DDDHVRVSAASILGIMSQCMEDG-QLADLLQELL 2435 (2612)
Q Consensus 2375 ~vi~~~g~~~~~~~~~~i~~~L~~~l~~------------------~~~~vr~~aa~~Lg~L~~~~~~~-~~~~~l~~ll 2435 (2612)
.+++..+.- -.++.+.+++.|.....- +.-++|.+|.+|+..+.....+. .+.+++..+.
T Consensus 1029 ~~~~~~p~l-i~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~ 1107 (1207)
T d1u6gc_ 1029 SAAHNKPSL-IRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVE 1107 (1207)
T ss_dssp HHHHHCGGG-TGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHH
T ss_pred HHHHhChHH-HHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Confidence 999876544 367788888887654321 23469999999999998765543 5778888887
Q ss_pred hhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhh----hccCC--------hhHHHhHHHHHHHHHhh
Q 000051 2436 NLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS----LKDEK--------FPLREASTKALGRLLLH 2502 (2612)
Q Consensus 2436 ~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~----~~~~~--------~~ir~~a~~alg~ll~~ 2502 (2612)
..+.+ ++.++.-+...|..++.-+|..+. ...+.+++.+... .+++. .+..+.+.+++..+..+
T Consensus 1108 ~gl~d-~~di~~~~~~~l~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~ 1183 (1207)
T d1u6gc_ 1108 DGLKD-HYDIKMLTFLMLVRLSTLCPSAVL--QRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTI 1183 (1207)
T ss_dssp HTTSS-CHHHHHHHHHHHHHHHHSCCHHHH--TTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hcccc-hHHHHHHHHHHHHHHHHhCcHHHH--HHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 76665 456788888888888888887654 2344455444443 33332 35677788888887554
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.2e-29 Score=347.96 Aligned_cols=565 Identities=19% Similarity=0.237 Sum_probs=435.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~ 1417 (2612)
.+..+++.|.+ ++...|..|+..|+.++..+|+.... ..++|++.+.++++ ..++.++...++.+....|. ..+
T Consensus 11 ~i~~l~~~l~~-~~~~~R~~a~~~l~~ia~~lg~~~~~-~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~--~~~ 84 (588)
T d1b3ua_ 11 PIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGG--PEY 84 (588)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTS--GGG
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCC--hhH
Confidence 45566777664 46889999999999999999987664 37999999988765 34554444444433332221 235
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCCh-hhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w-~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
+..++|.+...+.++++.||++|..++..+....+++.+...+.+++..|.+++| ..|..++.+++.++...... .
T Consensus 85 ~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~---~ 161 (588)
T d1b3ua_ 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH---H
Confidence 6788999989999999999999999999999999988887666667777766666 55777777777776544433 3
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ 1576 (2612)
...+++.+.++++|.++.||..|+.+++.+++.++.+... ..
T Consensus 162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~--------------------------------------~~ 203 (588)
T d1b3ua_ 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK--------------------------------------SE 203 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------------HT
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHH--------------------------------------HH
Confidence 3567788888999999999999999999999876533221 12
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-c
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 1655 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-~ 1655 (2612)
++|.+...++|.++.+|..+..+++.++...+. ..+...++|.+...+.|++|.||..++.+++.++..++.+. .
T Consensus 204 l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~ 279 (588)
T d1b3ua_ 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 444555555666677777777777777765432 23345577888888888888888888888888888777653 3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh-----hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1656 ~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
..++|.+...+.+. ...+|..++..++.++..++.. .++.++|.+.....+.++.+|..+..++..++..+|.
T Consensus 280 ~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~- 357 (588)
T d1b3ua_ 280 TDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK- 357 (588)
T ss_dssp HTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-
T ss_pred hhhhHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch-
Confidence 45677776666544 4567888888888888776654 3467888888888999999999999999988888886
Q ss_pred hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000051 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2612)
Q Consensus 1731 f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~-~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~ 1809 (2612)
..+.+.++|.+...+.|+++++|..+..++..+...++.. ..+.++|.+.+.+.|.+|++|.++++.++.+....
T Consensus 358 -~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~--- 433 (588)
T d1b3ua_ 358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL--- 433 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---
T ss_pred -hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc---
Confidence 3567788999999999999999999999998888877654 34669999999999999999999999998875432
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHhChhhH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 000051 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2612)
Q Consensus 1810 ~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~-~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~ 1888 (2612)
|.+.+ +.+.+.+...+.|..+.||.+|+..++.++...+.. ...+.+++
T Consensus 434 ----------------------------~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~--~~~~~i~~ 483 (588)
T d1b3ua_ 434 ----------------------------GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp ----------------------------CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred ----------------------------ChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH--HHHHHHHH
Confidence 22211 234444556688999999999999999999866542 34566788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHH
Q 000051 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2612)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll 1967 (2612)
.+...+.++++..|..+..+++.+...++.. +.+.++|.+.+.++|+.++||.+++.+++.+....+... +...+.
T Consensus 484 ~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---~~~~i~ 560 (588)
T d1b3ua_ 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---HHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---HHHHHH
Confidence 8888899999999999999999999887765 567899999999999999999999999999876665433 345678
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHH
Q 000051 1968 PTIRTALCDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1968 ~~l~~~L~D~d~~Vr~~A~~al~~l 1992 (2612)
|.+.+.+.|+|.+||..|..|++.+
T Consensus 561 ~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 8888889999999999999999865
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.2e-30 Score=369.27 Aligned_cols=743 Identities=15% Similarity=0.154 Sum_probs=503.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCCCC
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2612)
+++.++|++++|||+++|++|+++|+.... .|....++..+.....+.+..+|.+|. ..|...+.+.
T Consensus 11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~-----~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~ 85 (888)
T d1qbkb_ 11 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85 (888)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTSTTTSTT-----STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 467888999999999999999999987631 122334445555444555666777753 5787766556
Q ss_pred CCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh
Q 000051 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2612)
Q Consensus 1129 ~~~~-~~Ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~ 1206 (2612)
.+.+ ..++..+.+++..+|+.++.+++.++.. +|+.||+++..|.+.. . ..++.+|+++..+++++++
T Consensus 86 ~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l----~------s~~~~~~~~al~~L~~i~e 155 (888)
T d1qbkb_ 86 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL----D------SEDYNTCEGAFGALQKICE 155 (888)
T ss_dssp CHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSS----T------GGGSSCSSSSSTTTHHHHG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHh----C------CCCHHHHHHHHHHHHHHHH
Confidence 5556 7788999999999999999999998853 4455666655554321 1 2245678888888888875
Q ss_pred hh----CCC----ChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcc---hhhhhHHHHHHHhccCCCChHHhhh
Q 000051 1207 VL----RTK----DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL 1275 (2612)
Q Consensus 1207 ~~----~~~----~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~---~~~~Llp~~~~~l~~~~~~~~~~d~ 1275 (2612)
.. ..+ ..+.++..++ .++.+.++.||..++.++..++...+.. .++.+++.+...... .+..
T Consensus 156 ~~~~~~~~~~~~~~~~~ll~~ll-~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~ 228 (888)
T d1qbkb_ 156 DSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGD------EEPE 228 (888)
T ss_dssp GGHHHHHTC---CCSTTTTHHHH-TGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSC------CCSS
T ss_pred HhHHHhhHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCC------cchH
Confidence 32 222 2233444443 6778888899999999988776554432 234444444333332 2345
Q ss_pred HHhHHHHHHHHHhhhh-ccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhh--c----chhHHHHHHHH-----
Q 000051 1276 VREGVVIFTGALAKHL-AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM--Q----DEAPTLVSRLL----- 1343 (2612)
Q Consensus 1276 vr~~~i~~l~~La~~l-~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~--~----~~~~~li~~ll----- 1343 (2612)
+|..++..++.+.... +...|++..+++.++..+.+++++|+..+.+.+..+.... . ...+.+++.++
T Consensus 229 vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~ 308 (888)
T d1qbkb_ 229 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308 (888)
T ss_dssp STTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 7888887777766433 2335778888888889999999999998886543332110 0 00000000000
Q ss_pred ------------------------------------------------HHhhc------CCChHHHHHHHHHHHHHHhhh
Q 000051 1344 ------------------------------------------------DQLMK------SDKYGERRGAAFGLAGVVKGF 1369 (2612)
Q Consensus 1344 ------------------------------------------------~~L~~------~~~~~~R~~Aa~~L~~l~~~l 1369 (2612)
..... ..+|..|+.++.+|+.++...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~ 388 (888)
T d1qbkb_ 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY 388 (888)
T ss_dssp SSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC
T ss_pred chHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh
Confidence 00000 123667999999999888877
Q ss_pred CcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000051 1370 GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1370 g~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~ 1449 (2612)
|...+. .+++.+.+.+.+. +|..|++|+++|+.+++++.+.+.+++.+++|.++..+.|+++.||.+++.+++.+..
T Consensus 389 ~~~il~--~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 465 (888)
T d1qbkb_ 389 RDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465 (888)
T ss_dssp CSSSHH--HHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHH--HHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 766654 6888888888887 7999999999999999998888999999999999999999999999998877776632
Q ss_pred hhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
... +.....++..+++.++..+.|+++.||.+|+.||..+.+.
T Consensus 466 ~~~-------------------------------------~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~ 508 (888)
T d1qbkb_ 466 WVV-------------------------------------SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 508 (888)
T ss_dssp HHH-------------------------------------SSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred Hhh-------------------------------------hhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 211 1222345678888899999999999999999999999876
Q ss_pred cCC---hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1530 IKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1530 ~~~---~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
.++ |++..+++.+... +.+...+.+..+.++++.++..
T Consensus 509 ~~~~l~p~~~~il~~l~~~---------------------------------------l~~~~~~~~~~~~~al~~l~~~ 549 (888)
T d1qbkb_ 509 ACTELVPYLAYILDTLVFA---------------------------------------FSKYQHKNLLILYDAIGTLADS 549 (888)
T ss_dssp HTTSSGGGHHHHHHHHHHH---------------------------------------TTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHH---------------------------------------HhhhhHHHHHHHHHHHHHHHHh
Confidence 543 3344444444444 4444445555566666666655
Q ss_pred cCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCCCch---hhHHHHHHHhc--------------
Q 000051 1607 VTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALK-------------- 1667 (2612)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g~~~~~---~ll~~L~~~L~-------------- 1667 (2612)
++..-.-.+|.+.+++.+...... .+...+.....+++.++...|+...+ .+++.++..+.
T Consensus 550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 629 (888)
T d1qbkb_ 550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 629 (888)
T ss_dssp HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 443222346777888888776542 22234556788999999988876322 22222222111
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1668 --SDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1668 --~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
..........+...++.++..+|.... ..+++.+...+.+.++.+|+.++.+++.++..++..+.||++.++|
T Consensus 630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~ 709 (888)
T d1qbkb_ 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMP 709 (888)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 011122333455667778877776422 2367778888899999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCC
Q 000051 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2612)
Q Consensus 1741 ~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~d 1820 (2612)
.+...+.++...++..+..+++.++..++... .|
T Consensus 710 ~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~----~p------------------------------------------ 743 (888)
T d1qbkb_ 710 ILGTNLNPEFISVCNNATWAIGEISIQMGIEM----QP------------------------------------------ 743 (888)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGG----GG------------------------------------------
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHh----hh------------------------------------------
Confidence 99999998888888888888777766554431 11
Q ss_pred CCccchHHHHHHHHHHhChhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcC-C
Q 000051 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-S 1897 (2612)
Q Consensus 1821 dd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~-~ 1897 (2612)
+.+.+++.+...+ .+....|++.++.+++.++...|..+.++++.+++..+..+.. .
T Consensus 744 --------------------y~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~ 803 (888)
T d1qbkb_ 744 --------------------YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR 803 (888)
T ss_dssp --------------------GSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC
T ss_pred --------------------hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC
Confidence 1111222222222 2345668888999999999999999999999999998888875 4
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc--CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHH
Q 000051 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL--KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2612)
Q Consensus 1898 ~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L--~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2612)
+.+.+..|...+..+++.-++.+.+.+..++.... .++.++++...+..|.......+++.+..++.++
T Consensus 804 d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~ 874 (888)
T d1qbkb_ 804 DNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQF 874 (888)
T ss_dssp CSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcC
Confidence 55678889999999998777666665544443322 3456778888777777765555554444444433
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.2e-30 Score=367.18 Aligned_cols=786 Identities=15% Similarity=0.168 Sum_probs=547.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhc---cccccCChhhHhhHHHHHHHhhcC
Q 000051 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~---~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
++..+|+.|.+.|.++.. .|++..++..++....+++..+|.....+.+. .....++......+.+.+.+++.+
T Consensus 23 ~d~~~r~~A~~~L~~~~~---~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik~~ll~~l~~ 99 (888)
T d1qbkb_ 23 PDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD 99 (888)
T ss_dssp HHHHHHHHHTTSTTTSTT---STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHHHHHTTGGGC
T ss_pred CCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHcC
Confidence 457899999988887643 35555555556555566666677432222211 122335556677788899999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC--------CCCchhhH
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--------EENFPDLV 1659 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g--------~~~~~~ll 1659 (2612)
++..+|..++.+++.++.. ..+ ...|.++|.+.+.+.++++.+|..|..+++.+++..+ ....+.++
T Consensus 100 ~~~~vr~~~~~~i~~i~~~-~~~----~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll 174 (888)
T d1qbkb_ 100 SSPLIRATVGILITTIASK-GEL----QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMI 174 (888)
T ss_dssp CCSSTTTTTTTTTHHHHTT-TSS----CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTT
T ss_pred CCHHHHHHHHHHHHHHHHH-hCc----cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH
Confidence 9999999999999999874 222 2356788888888888888899999999999886432 12467789
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh---hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHH
Q 000051 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2612)
Q Consensus 1660 ~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~---~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~ 1736 (2612)
|.+++.+.+... .+|..+..++..++...+. ..++.+++.+.....++++.+|..++.+|..+....++.|.||+.
T Consensus 175 ~~ll~~~~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~ 253 (888)
T d1qbkb_ 175 PKFLQFFKHSSP-KIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 253 (888)
T ss_dssp HHHHTGGGSSSS-CSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTT
T ss_pred HHHHHHhhCCCH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999888876553 4677788887776654443 245778888988889999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000051 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2612)
Q Consensus 1737 ~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-----~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~ 1811 (2612)
.+++.++..+.|++++||..|.+.+..+++.. -....+.++|.+...+....+.+.........+. ...+...
T Consensus 254 ~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 331 (888)
T d1qbkb_ 254 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDE--TIPDSEQ 331 (888)
T ss_dssp TTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCT--TSCCCGG
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhh--hhhhhHH
Confidence 99999999999999999988877665444221 1123455677777766666555432110000000 0000000
Q ss_pred -------cccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHH
Q 000051 1812 -------KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP 1884 (2612)
Q Consensus 1812 -------~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~ 1884 (2612)
..........+ .. ....+.+ .........+..+.+|.+|..++..++...+. ++++
T Consensus 332 ~i~~~~~~~~~~~~~~~~-~~--------~~~~~~~-----~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~---~il~ 394 (888)
T d1qbkb_ 332 DIRPRFHRSRTVAQQHDE-DG--------IEEEDDD-----DDEIDDDDTISDWNLRKCSAAALDVLANVYRD---ELLP 394 (888)
T ss_dssp GCCCCCCCCCCCCCCCTT-C-------------CHH-----HHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCS---SSHH
T ss_pred HHHHHHHHHHHHHHHhhh-hh--------hhhcccc-----hhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHH---HHHH
Confidence 00000000000 00 0000000 00000001234567899999999888876665 4678
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHH
Q 000051 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2612)
Q Consensus 1885 ~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~ 1961 (2612)
.+++.+...+.+++|..|..|..+++.+++...+. .++.++|.+...++|+++.+|..+|++++.+.....+....+
T Consensus 395 ~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~ 474 (888)
T d1qbkb_ 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT 474 (888)
T ss_dssp HHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 88999999999999999999999999988655443 578899999999999999999999999999876665555567
Q ss_pred hHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccc
Q 000051 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041 (2612)
Q Consensus 1962 ~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Li 2041 (2612)
|+..+++.+...+.|+++.|+++|+.+|..+.+..
T Consensus 475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~--------------------------------------------- 509 (888)
T d1qbkb_ 475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA--------------------------------------------- 509 (888)
T ss_dssp HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 88899999999999999999999988887765433
Q ss_pred hhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-----ccHHHHHHH
Q 000051 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-----EGVESLVSE 2116 (2612)
Q Consensus 2042 p~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-----~~l~~ll~~ 2116 (2612)
+..+.||++.+++.++..+...+...+..+..+++.++..++. +....+++.
T Consensus 510 -----------------------~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~ 566 (888)
T d1qbkb_ 510 -----------------------CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPP 566 (888)
T ss_dssp -----------------------TTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHH
T ss_pred -----------------------hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 3334566666777777777666666666666666666654432 335556666
Q ss_pred HHhhcC--CCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhc-----------------CCChhHHHHHHHHH
Q 000051 2117 LLKGVG--DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----------------DSDSTTVAAAWEAL 2177 (2612)
Q Consensus 2117 Ll~~l~--~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~-----------------d~d~~V~~~a~~aL 2177 (2612)
+..... ..+...+.....+++.++...+..+.+|...+.+.++..+. .++.++...+...+
T Consensus 567 l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l 646 (888)
T d1qbkb_ 567 LIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 646 (888)
T ss_dssp HHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 555432 12333455677888888888877888887777666655442 11222333333333
Q ss_pred HHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc--hhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000051 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL--QPLLPIFLQGLISGSAELREQAALGLGE 2255 (2612)
Q Consensus 2178 ~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l--~~ilp~l~~~L~~~~~~~r~~aa~~L~~ 2255 (2612)
+.++...+... ...+ ..+++.+...+.+.++++|+.|..++|+
T Consensus 647 ~~l~~~l~~~~-----------------------------------~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgd 691 (888)
T d1qbkb_ 647 SGLAEGLGGNI-----------------------------------EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 691 (888)
T ss_dssp HHHHHHHTTTT-----------------------------------HHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----------------------------------hhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33322211110 0111 2367888899999999999999999999
Q ss_pred HHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHH
Q 000051 2256 LIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSA 2333 (2612)
Q Consensus 2256 li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~A 2333 (2612)
++...+ ..+.||++.+++.++..+.+. ..+++..+++++|.++..+|..++||++++.+.+++.++++ ++.++.++
T Consensus 692 l~~~~~-~~~~~~l~~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~ 769 (888)
T d1qbkb_ 692 LTKACF-QHVKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT 769 (888)
T ss_dssp HHHHCG-GGTGGGHHHHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHhhh-HHHHHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 999887 789999999999999998764 67899999999999999999999999999999999999986 68899999
Q ss_pred HHHHHHHHhc-----cCChhHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHH
Q 000051 2334 ALALGKLSAL-----STRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 2407 (2612)
Q Consensus 2334 a~aLg~L~~~-----~~~~~~~l~~Ll~~l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~v 2407 (2612)
+.|+|++... .|+++.+++.++..+.. .|.+-++.+...+..++...+..+ .+....++..+... .+..+++
T Consensus 770 ~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~-~~~l~~~~~~i~~~-~~~~~~~ 847 (888)
T d1qbkb_ 770 AITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV-IQDFIFFCDAVASW-INPKDDL 847 (888)
T ss_dssp HHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGT-GGGHHHHHHHHTTC-SSCCHHH
T ss_pred HHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHH-HHHHHHHHHHHHhc-CCCCHHH
Confidence 9999999543 46777888888888865 355568889999999998766554 33445555555332 2356789
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHH
Q 000051 2408 RVSAASILGIMSQCMEDGQLADLL 2431 (2612)
Q Consensus 2408 r~~aa~~Lg~L~~~~~~~~~~~~l 2431 (2612)
+......|+.+....|++.+..++
T Consensus 848 ~~~~~~~l~~~~~~~~~~~w~~~~ 871 (888)
T d1qbkb_ 848 RDMFCKILHGFKNQVGDENWRRFS 871 (888)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHhHHHHH
Confidence 999999999888777765444443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2e-26 Score=315.81 Aligned_cols=562 Identities=17% Similarity=0.214 Sum_probs=443.3
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcch-hhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCC
Q 000051 1217 MTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN-VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD 1295 (2612)
Q Consensus 1217 ~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~-~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~ 1295 (2612)
+..|+ ..+.+.+..+|..++..+..+....|.+. .++++|.+.+.+.. .++++..+..-++.+...+. +.
T Consensus 12 i~~l~-~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~-------~~ev~~~~~~~l~~~~~~~~-~~ 82 (588)
T d1b3ua_ 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD-------EDEVLLALAEQLGTFTTLVG-GP 82 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC-------CHHHHHHHHHHHTTCSGGGT-SG
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHcC-Ch
Confidence 45554 77899999999999999988888888765 57899999887754 23455555555555544432 23
Q ss_pred cchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchh
Q 000051 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374 (2612)
Q Consensus 1296 ~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l 1374 (2612)
..+..+++.+...+.+++..||..+++++..+....... ....+..++..|.+++.+..|..|+..++.+....+....
T Consensus 83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~ 162 (588)
T d1b3ua_ 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK 162 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence 357778888888899999999999999999887665432 3444556777777776666777777777777766554433
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000051 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2612)
Q Consensus 1375 ~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2612)
. .+++.+.+.++|+ ++.+|..+..+++.+++..+. +.....++|.+...+.|+++.||..+..++..+...++..
T Consensus 163 ~--~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~ 237 (588)
T d1b3ua_ 163 A--ELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp H--HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred H--HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence 2 5788888888887 799999999999999987763 2223578888999999999999999999999999888776
Q ss_pred hH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh
Q 000051 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2612)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2612)
.. ..++|.+.+.+.+.+|++|..++.+|+.++...+... ....++|.+..+++|++++||..|..+++.++..+...
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhh--hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 54 6688888888999999999999999999987544432 22578899999999999999999999999999876532
Q ss_pred -----hHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc
Q 000051 1534 -----EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2612)
Q Consensus 1534 -----~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~-~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~ 1607 (2612)
.+..++|.+...+.|++..+|.++..... .+....+ ......++|.+...+.|.++++|..+...++.+....
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~-~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~ 394 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIM-GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGG-GGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHh-hhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc
Confidence 35788999999999999988854332211 1111112 2345678899999999999999999999888887754
Q ss_pred CCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000051 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2612)
Q Consensus 1608 ~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~ 1686 (2612)
+ .....+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.+.|.++..+.+ ....+|..++.+++.++
T Consensus 395 ~----~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D-~~~~VR~~A~~~L~~l~ 469 (588)
T d1b3ua_ 395 G----IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLV 469 (588)
T ss_dssp C----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHH
T ss_pred c----hhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHH
Confidence 3 2345567899999999999999999999999999999987754 5566766666654 45779999999999999
Q ss_pred HHhChhhH-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000051 1687 AALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2612)
Q Consensus 1687 ~~~g~~~l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv 1765 (2612)
..+|.+.. ..++|.+.+...++++.+|..++.+++.+...++.. .+.+.++|.+++.+.|+.++||.++.+++..+.
T Consensus 470 ~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~--~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~ 547 (588)
T d1b3ua_ 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99998743 678899999999999999999999999999988764 345679999999999999999999999999887
Q ss_pred HHhhhchh-hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1766 EHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1766 ~~~~~~~i-~~llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
..++.... ..+.|.+.+...|++-.+|..|.+.+..+
T Consensus 548 ~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 76665543 44778888888898888999888877654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.1e-23 Score=302.07 Aligned_cols=750 Identities=14% Similarity=0.178 Sum_probs=513.7
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCCh--hHHH-HHHHHHhccccccCChhhHh
Q 000051 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKY-SLDILLQTTFVNTVDAPSLA 1575 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~--~~r~-al~~L~~~~~~~~i~~~~l~ 1575 (2612)
++...|...+.++++.+|+.|.+.|..+.+. ....+++.+.+.+.+++. .+|. |.-.
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~A~i~---------------- 64 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALT---------------- 64 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc----CchHHHHHHHHHHHcCCCCHHHHHHHHHH----------------
Confidence 4455566667788999999999999988753 223566677777765443 3341 2111
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-CC
Q 000051 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-EN 1654 (2612)
Q Consensus 1576 ~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~-~~ 1654 (2612)
|.+.+..............+-. .+ + .+ ....+-..+.+.+.++++.+|..++.+++.++....+ ..
T Consensus 65 -----lkn~i~~~~~~~~~~~~~~~~~---~i-~-~~---~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~ 131 (861)
T d2bpta1 65 -----LKNELVSKDSVKTQQFAQRWIT---QV-S-PE---AKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA 131 (861)
T ss_dssp -----HHTTTCCSSHHHHHHHHHHHHH---HS-C-HH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred -----HHHHhhcccchhhhhHHhhhHh---cC-C-HH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc
Confidence 1112222111111111111110 11 1 01 1233455666777889999999999999999986444 47
Q ss_pred chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh------hHHhHhHHHHHhcc--CCChhhHhHHHHHHHHhhhh
Q 000051 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YFEHILPDIIRNCS--HQRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~------~l~~llp~l~~~~~--~~~~~vR~~~~~~l~~L~~~ 1726 (2612)
++++++.+++.+.++.+...|.++..+++.++...+.. .+..+++.+++.+. +.+..+|..++.++..+...
T Consensus 132 wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 89999999999988777778888999999998877653 23456666666654 45688999999999999888
Q ss_pred hccchhh--hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchh---hhhHH-HHhhccCCCchHHHHHHHHHHH
Q 000051 1727 LGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL---PLLLP-AVEDGIFNDNWRIRQSSVELLG 1800 (2612)
Q Consensus 1727 ~g~~f~p--~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i---~~llp-~L~~~l~d~~w~vR~~a~~ll~ 1800 (2612)
++..+.. ....+++.+...+.++++.+|..+..++..++..++.... ..++. .+.....+.++.+|..+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~ 291 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7765543 3456788888899999999999999999999887765422 22222 2334455666677777666665
Q ss_pred HHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH
Q 000051 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2612)
Q Consensus 1801 ~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~ 1880 (2612)
.+..... .... . ....... .........
T Consensus 292 ~l~~~~~------------------------~~~~------------~-~~~~~~~---------------~~~~~~~~~ 319 (861)
T d2bpta1 292 TICEEEI------------------------DIAY------------E-LAQFPQS---------------PLQSYNFAL 319 (861)
T ss_dssp HHHHHHH------------------------HHHH------------H-HHHCTTC---------------SCCCCCHHH
T ss_pred HHHHHHH------------------------HHHH------------H-HHhhhhh---------------HHHHHHHHH
Confidence 5432100 0000 0 0000000 000111223
Q ss_pred HHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000051 1881 EIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2612)
Q Consensus 1881 ~~l~~ll~~L~~~L~~-------~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2612)
.+++.+++.+...+.+ .++..|..+..++..+....|..+.+.+.+.+...+.++++..|.+++.+++.+...
T Consensus 320 ~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~ 399 (861)
T d2bpta1 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555542 345789999999999999999999999999999999999999999999999998877
Q ss_pred hChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-----hhhhHHHHHHhccCCCcchHHHHHHHHH
Q 000051 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2612)
Q Consensus 1954 ~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~-----~~~ilp~Ll~~L~~~~~~~~al~~L~~i 2028 (2612)
.+.....++++.+++.+...+.|+++.||+.++.+++.+.+..+... +..+++.+...+.++..
T Consensus 400 ~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~----------- 468 (861)
T d2bpta1 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPK----------- 468 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHH-----------
T ss_pred cchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChH-----------
Confidence 77777888999999999999999999999999999999988766532 22223333322222110
Q ss_pred hhhcccccccccchhhccCCcchhHHHHHHHHHHHh----CCChhhhHhhHHHHHHHhcC--CCCHHHHHHHHHHHHHhh
Q 000051 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA----GPGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETVT 2102 (2612)
Q Consensus 2029 l~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~----g~~l~~~l~~il~~Ll~~L~--~~~~~vr~~a~~al~~l~ 2102 (2612)
.....+.++..+.... ...+.+++..++..++.... +.+..++..+..++..++
T Consensus 469 --------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i 528 (861)
T d2bpta1 469 --------------------VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp --------------------HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 0011223333444333 23355667777777777653 345678888889998888
Q ss_pred hhcccc---cHHHHHHHHHhh----cCCC-----------ChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcC
Q 000051 2103 LVIDEE---GVESLVSELLKG----VGDN-----------QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164 (2612)
Q Consensus 2103 ~~~~~~---~l~~ll~~Ll~~----l~~~-----------~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d 2164 (2612)
...+.. .+..+++.+... +... ....+..+...++.++...+.++.++.+.++..++..+.+
T Consensus 529 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T d2bpta1 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhccc
Confidence 766542 233333332222 2111 1234556667788888888889999999999999998865
Q ss_pred C-ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCH
Q 000051 2165 S-DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243 (2612)
Q Consensus 2165 ~-d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~ 2243 (2612)
. +..+++.++.+++.++...+.+. .+++..++|.+..++.+.++
T Consensus 609 ~~~~~v~~~~l~~l~~l~~~~~~~~-----------------------------------~~~l~~i~p~l~~~l~~~~~ 653 (861)
T d2bpta1 609 KDSAFIEDDVFYAISALAASLGKGF-----------------------------------EKYLETFSPYLLKALNQVDS 653 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHGGGG-----------------------------------HHHHHHHHHHHHHHHHCTTS
T ss_pred CCchhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHhhHHHHHhCCCCH
Confidence 4 46788889999888876543321 13456688999999999999
Q ss_pred HHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHh
Q 000051 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322 (2612)
Q Consensus 2244 ~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L 2322 (2612)
.+|..|+.+++.++...+ ..+.||++.+++.|++.+++. .+.++|..++.++|.++..+|..+.||+|++++.+.+.+
T Consensus 654 ~v~~~a~~~l~~i~~~~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~ 732 (861)
T d2bpta1 654 PVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQ 732 (861)
T ss_dssp HHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH-HHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998887 789999999999999999865 356899999999999999999999999999999999887
Q ss_pred cCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCc--ChHHHHHHHHHHHHhh
Q 000051 2323 QDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLV 2400 (2612)
Q Consensus 2323 ~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l 2400 (2612)
+...+...... .... .++|++++.++..++...+... ..++.+.|++.+...+
T Consensus 733 ~~~~~~~~~~~---------------------~~~~----~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~ 787 (861)
T d2bpta1 733 NTKPENGTLEA---------------------LDYQ----IKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVA 787 (861)
T ss_dssp TCCCSSSSHHH---------------------HHHH----HHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHH
T ss_pred CcCCCcccHHH---------------------HHHH----HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 76421111111 0000 2468888888888887654432 2467888888887777
Q ss_pred cC----CCHHHHHHHHHHHHHHHhhCChh
Q 000051 2401 YH----DDDHVRVSAASILGIMSQCMEDG 2425 (2612)
Q Consensus 2401 ~~----~~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2612)
.+ .++.++..++.++|.++..+|+.
T Consensus 788 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 816 (861)
T d2bpta1 788 EDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred hCCccCCCHHHHHHHHHHHHHHHHHCcch
Confidence 65 46788899999999999888864
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.7e-21 Score=275.42 Aligned_cols=745 Identities=14% Similarity=0.154 Sum_probs=492.3
Q ss_pred hHhHH-HhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000051 1132 YSGLF-KALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2612)
Q Consensus 1132 ~~~Ll-~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~--- 1207 (2612)
+..+| ..+.++|+.+|+.|.+.|-.+.++.+. ..+..+.+... + ...+-.+|..++..|+.....
T Consensus 6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~---~~~~~l~~il~----~----~~~~~~~r~~A~i~lkn~i~~~~~ 74 (861)
T d2bpta1 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFL---QFAGLSSQVLI----D----ENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHT----C----TTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHH----c----CCCCHHHHHHHHHHHHHHhhcccc
Confidence 43444 457899999999999999877766432 22333333221 1 022346888888888765421
Q ss_pred -------------hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC-cchhhhhHHHHHHHhccCCCChHHh
Q 000051 1208 -------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEKY 1273 (2612)
Q Consensus 1208 -------------~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g-~~~~~~Llp~~~~~l~~~~~~~~~~ 1273 (2612)
++++....+.+.+ ..++.++++.||..+..++..++.... ...|++++|.+.+.+.... .
T Consensus 75 ~~~~~~~~~~~~~i~~~~~~~ik~~l-l~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~-----~ 148 (861)
T d2bpta1 75 VKTQQFAQRWITQVSPEAKNQIKTNA-LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-----P 148 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-----C
T ss_pred hhhhhHHhhhHhcCCHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCC-----c
Confidence 2222222344444 367889999999999999888877643 4479999998877776421 2
Q ss_pred hhHHhHHHHHHHHHhhhhccCC----cchHhHHHHHHHhcC--CCCHHHHHHHHhhhHHhHhhhcchh------HHHHHH
Q 000051 1274 DLVREGVVIFTGALAKHLAKDD----PKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSR 1341 (2612)
Q Consensus 1274 d~vr~~~i~~l~~La~~l~~~~----~~~~~i~~~L~~~L~--~~~~~Vq~~~~~~L~~lv~~~~~~~------~~li~~ 1341 (2612)
..+|.++...++.++..++... +.+..++..++..+. +++..||..+..++..++....... ...++.
T Consensus 149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (861)
T d2bpta1 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence 4567888888998887654432 334556666666553 4578999999999988876654321 223333
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-------
Q 000051 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------- 1412 (2612)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~------- 1412 (2612)
+.+ ....++...|..+..++..++...+..... ...+...+....++. ++..|..++..+..+++....
T Consensus 229 l~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 306 (861)
T d2bpta1 229 VCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQ 306 (861)
T ss_dssp HHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 334566789999999999999876543221 111222233333444 788999998888877754221
Q ss_pred ----------cchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhH
Q 000051 1413 ----------LFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 1475 (2612)
Q Consensus 1413 ----------~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r 1475 (2612)
...+++..++|.++..+.+ .+..+|..+..++..++...+...+..+++.+...+.+.+|+.|
T Consensus 307 ~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (861)
T d2bpta1 307 FPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNR 386 (861)
T ss_dssp CTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHH
Confidence 1234556778888887753 24578999999999998888877777777877778889999999
Q ss_pred HHHHHHHHHHHhhC-chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH
Q 000051 1476 QSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2612)
Q Consensus 1476 ~~a~~~L~~ia~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r 1554 (2612)
.+++.+++.++... +..+..+++.+++.+.+.+.|+++.||..++++++.+++.++.... +
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------------~----- 448 (861)
T d2bpta1 387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID-------------P----- 448 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-------------T-----
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhh-------------h-----
Confidence 99999999998754 4556778899999999999999999999999999999876542100 0
Q ss_pred HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC--CCcchhhHhhhHHHHHHHhc--C
Q 000051 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLV--D 1630 (2612)
Q Consensus 1555 ~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~--d 1630 (2612)
...+..+++.+...+.+ ++.++..++..+..++....+ .....++...++..+..... +
T Consensus 449 ----------------~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 511 (861)
T d2bpta1 449 ----------------QQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID 511 (861)
T ss_dssp ----------------TTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC
T ss_pred ----------------HHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhh
Confidence 01112222333333322 345666666666666554332 23455666667777766654 4
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhcc----C---CCH-------HHHHHHHHHHHHHHHHhChh-
Q 000051 1631 PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----D---NSN-------VERSGAAQGLSEVLAALGTV- 1692 (2612)
Q Consensus 1631 ~~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~----~---~~~-------~~R~~aa~~L~~i~~~~g~~- 1692 (2612)
....+|..+..+++.++...++. ++..+.+.+...+.. . ... ..+......++.+....+..
T Consensus 512 ~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 591 (861)
T d2bpta1 512 NEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSV 591 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGT
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhH
Confidence 56789999999999999988765 233444444333321 1 111 12223334455555555443
Q ss_pred --hHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000051 1693 --YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1693 --~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~ 1769 (2612)
..+.+++.+++.+.+ .++.+|+.++.+++.++..+|..|.||++.++|.++.++.+.++.+|..|...+..+....+
T Consensus 592 ~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~ 671 (861)
T d2bpta1 592 EPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp GGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH
Confidence 335666666666654 46779999999999999999999999999999999999999988999888877777665443
Q ss_pred hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHH
Q 000051 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2612)
Q Consensus 1770 ~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L 1849 (2612)
... .| +.+++++.+
T Consensus 672 ~~~----~~--------------------------------------------------------------~~~~i~~~L 685 (861)
T d2bpta1 672 EDF----RR--------------------------------------------------------------YSDAMMNVL 685 (861)
T ss_dssp GGG----HH--------------------------------------------------------------HHHHHHHHH
T ss_pred HHh----Hh--------------------------------------------------------------hHHHHHHHH
Confidence 321 11 111122222
Q ss_pred HHHcc--CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHHh
Q 000051 1850 YMVRS--DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRKL 1916 (2612)
Q Consensus 1850 ~~~~~--D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~-----------~~~R~~A~~aL~~lv~~~ 1916 (2612)
...+. +.+..+|..++.+++.++...+..+.+|++.+++.+.+.+.... ...|..+..++..++...
T Consensus 686 ~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 765 (861)
T d2bpta1 686 AQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765 (861)
T ss_dssp HHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 23456889999999999998888899999999999988876432 235778888888887755
Q ss_pred chh------hhhhHHHHHhhhcCC----CChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHHhc--CCcHHHH
Q 000051 1917 GER------VLPSIIPILSRGLKD----PSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALC--DSILEVR 1982 (2612)
Q Consensus 1917 ~~~------~l~~llp~L~~~L~d----~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~--D~d~~Vr 1982 (2612)
... ..+.+++.+...+.+ .+.+++..++..+|.++..++.....+++ +.+...+..... +.+...|
T Consensus 766 ~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 845 (861)
T d2bpta1 766 HDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATK 845 (861)
T ss_dssp TTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHH
Confidence 432 245555555555554 35677888888999988887765554444 333344555554 3467788
Q ss_pred HHHHHHHHHHHHHh
Q 000051 1983 ESAGLAFSTLFKSA 1996 (2612)
Q Consensus 1983 ~~A~~al~~l~~~~ 1996 (2612)
+.|..|...+.+.+
T Consensus 846 ~~~~~~~~~~~~~~ 859 (861)
T d2bpta1 846 DTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88877776665543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.9e-21 Score=274.91 Aligned_cols=703 Identities=17% Similarity=0.234 Sum_probs=478.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhh------
Q 000051 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRG------ 1649 (2612)
Q Consensus 1578 ip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~------ 1649 (2612)
++.|... -+++.++|..|.+.+..+... + .+..+..+.+.+.+. +..+|..|+-.|......
T Consensus 4 ~~~L~~~-~s~d~~~r~~Ae~~L~~~~~~--~-------~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~ 73 (876)
T d1qgra_ 4 ITILEKT-VSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp HHHHHGG-GCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHH-hCcCHHHHHHHHHHHHHHHhc--C-------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchh
Confidence 3444433 457889999999999887652 1 233555555555443 578999999998876642
Q ss_pred ---------hCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-ChhhHHhHhHHHHHhccCC--ChhhHhHHH
Q 000051 1650 ---------MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GTVYFEHILPDIIRNCSHQ--RASVRDGYL 1717 (2612)
Q Consensus 1650 ---------~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~-g~~~l~~llp~l~~~~~~~--~~~vR~~~~ 1717 (2612)
++++....+...++..+.++.. .|..++.+++.++..- +.+.|++++|.+.+.+.++ ...+|++++
T Consensus 74 ~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~--~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l 151 (876)
T d1qgra_ 74 AQYQQRWLAIDANARREVKNYVLHTLGTETY--RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS--SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhhhcccccCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 2222334555667777766543 4556788888887763 4456889999999887654 467899999
Q ss_pred HHHHHhhhhhc-cchhhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhccCCCch
Q 000051 1718 TLFKYLPRSLG-VQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNW 1789 (2612)
Q Consensus 1718 ~~l~~L~~~~g-~~f~p~l~~iip~ll~~L~d~--~~~VR~~Al~al~~lv~~~~~~-----~i~~llp~L~~~l~d~~w 1789 (2612)
.++..++..++ ..+.++...+++.++..+.++ +..+|..++.++.......... ..+.+++.+...+.++++
T Consensus 152 ~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 231 (876)
T d1qgra_ 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCH
Confidence 99999988775 467889999999999988654 4678988888877665433221 223466677777888999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 000051 1790 RIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869 (2612)
Q Consensus 1790 ~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~ 1869 (2612)
++|..+++.+..+....+.. +...+. +.+...+.....+....++..++..|.
T Consensus 232 ~v~~~~~~~l~~l~~~~~~~-----------------------~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 232 RVRVAALQNLVKIMSLYYQY-----------------------METYMG----PALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGG-----------------------CHHHHT----TTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH-----------------------HHHHHH----HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999998887543211 011111 112222333456667788888888888
Q ss_pred HHHhcChh---------------------hHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhchhhh
Q 000051 1870 TIVANTPK---------------------TLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVL 1921 (2612)
Q Consensus 1870 ~l~~~~~~---------------------~l~~~l~~ll~~L~~~L~~-------~~~~~R~~A~~aL~~lv~~~~~~~l 1921 (2612)
.++..... ....+.+.+++.+...+.. .++..|..|..++..+....+...+
T Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 364 (876)
T d1qgra_ 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh
Confidence 77642211 1234455666666665542 3446899999999999999998899
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-
Q 000051 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA- 2000 (2612)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~- 2000 (2612)
+.+++.+.+.+.++++..|.+++..++.+........+.++...+++.+...+.|+++.||.+|..+++.+.+..+...
T Consensus 365 ~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T d1qgra_ 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhh
Confidence 9999999999999999999999999998877777778889999999999999999999999999999999887654321
Q ss_pred ----hhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHH
Q 000051 2001 ----IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076 (2612)
Q Consensus 2001 ----~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il 2076 (2612)
+..+++.++..+.+
T Consensus 445 ~~~~~~~~~~~l~~~l~~-------------------------------------------------------------- 462 (876)
T d1qgra_ 445 NDVYLAPLLQCLIEGLSA-------------------------------------------------------------- 462 (876)
T ss_dssp STTTHHHHHHHHHHHTTS--------------------------------------------------------------
T ss_pred hHHHhhhHHHHHHHHhcC--------------------------------------------------------------
Confidence 22223332222221
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhhh-----------------cccccHHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 000051 2077 PALLSAMGDDDMDVQSLAKEAAETVTLV-----------------IDEEGVESLVSELLKGVGD---NQASIRRSSAYLI 2136 (2612)
Q Consensus 2077 ~~Ll~~L~~~~~~vr~~a~~al~~l~~~-----------------~~~~~l~~ll~~Ll~~l~~---~~~~vR~~A~~~L 2136 (2612)
++.++..+.+++..+... .-..++..+++.++..+.. .+..+|..+...+
T Consensus 463 ----------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 532 (876)
T d1qgra_ 463 ----------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHH
Confidence 222222222222222210 0123456667777666643 3566888888888
Q ss_pred HHHHHhcccchhccHHHHHHHHHHHh----cCC----Chh-------HHHHHHHHHHHHHhhcCccccccHHHHHHHHHH
Q 000051 2137 GYFYKNSKLYLVDEAPNMISTLIVLL----SDS----DST-------TVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2612)
Q Consensus 2137 ~~l~~~~~~~~~~~~~~il~~L~~ll----~d~----d~~-------V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~ 2201 (2612)
..+......+..+++..++..++..+ ... ... .+.....++..+....+...
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------- 599 (876)
T d1qgra_ 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD------------- 599 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH-------------
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhh-------------
Confidence 88887777666666655555444433 211 111 11111122222221111100
Q ss_pred hhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH
Q 000051 2202 TSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279 (2612)
Q Consensus 2202 ~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~--~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~ 2279 (2612)
.+.....+++.+.+.+.. ++.++++.+..+++.++...+ ..+.+|++.+++++...
T Consensus 600 ---------------------~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~-~~~~~~l~~ii~~l~~~ 657 (876)
T d1qgra_ 600 ---------------------ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG-GEFLKYMEAFKPFLGIG 657 (876)
T ss_dssp ---------------------HHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHH
T ss_pred ---------------------hhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHHHHH
Confidence 012233455666555442 456788999999999999887 78999999999999999
Q ss_pred hcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH-hccCChhHHHHHHHH
Q 000051 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLS-ALSTRVDPLVGDLLS 2356 (2612)
Q Consensus 2280 l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~Ll~ 2356 (2612)
+.+..+++++..++.+++.+.+..+..+.||++++.+.+++.++++ ++.+|..+..++|.++ .+++...+|++.+++
T Consensus 658 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~ 737 (876)
T d1qgra_ 658 LKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLN 737 (876)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 9887778899999999999999999999999999999999999886 6889999999999994 345556666666655
Q ss_pred hhhc-------C-C-------HHHHHHHHHHHHHHHHhcCCC---c------ChHHHHHHHHHHHHhhc--CCCHHHHHH
Q 000051 2357 SLQV-------S-D-------AGIREAILTALKGVLKHAGKS---V------SSAVKIRVYSVLKDLVY--HDDDHVRVS 2410 (2612)
Q Consensus 2357 ~l~~-------~-d-------~~vr~~~l~AL~~vi~~~g~~---~------~~~~~~~i~~~L~~~l~--~~~~~vr~~ 2410 (2612)
.+.. . + ..+|+++++++..++...... . ..++.+.|+.++..... +.+++++..
T Consensus 738 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 817 (876)
T d1qgra_ 738 TLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVAC 817 (876)
T ss_dssp HHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHH
T ss_pred HHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 5431 1 1 246788888888887643211 1 23567778777765544 357889999
Q ss_pred HHHHHHHHHhhCChhH
Q 000051 2411 AASILGIMSQCMEDGQ 2426 (2612)
Q Consensus 2411 aa~~Lg~L~~~~~~~~ 2426 (2612)
+..++|.++..++...
T Consensus 818 ~~~~i~~l~~~~g~~~ 833 (876)
T d1qgra_ 818 AAGLIGDLCTAFGKDV 833 (876)
T ss_dssp HHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888653
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-20 Score=269.06 Aligned_cols=731 Identities=15% Similarity=0.193 Sum_probs=486.8
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh-----
Q 000051 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD----- 1206 (2612)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~ala~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~----- 1206 (2612)
..+|....++|..+|+.|.+.|..+.++. |+.+..+++.+.+ . ..+.++|..++..|+....
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~-------~-----~~~~~iR~~A~i~lKn~i~~~~~~ 71 (876)
T d1qgra_ 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHhhccccc
Confidence 45677777899999999999998887664 3333333333221 1 2234789999999987653
Q ss_pred ----------hhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHh-hCcchhhhhHHHHHHHhccCCCChHHhhh
Q 000051 1207 ----------VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2612)
Q Consensus 1207 ----------~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~-~g~~~~~~Llp~~~~~l~~~~~~~~~~d~ 1275 (2612)
.++++....+.+.++ .++.+++. +|..+..++..++.. .+.+.|++++|.+.+.+..++. ...
T Consensus 72 ~~~~~~~~~~~i~~~~k~~ik~~ll-~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~----~~~ 145 (876)
T d1qgra_ 72 IKAQYQQRWLAIDANARREVKNYVL-HTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEH 145 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHH
T ss_pred hhhhhhcccccCCHHHHHHHHHHHH-HHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCC----cHH
Confidence 122232333444453 56666554 454556666655554 4556799999999888875332 345
Q ss_pred HHhHHHHHHHHHhhhhccC--CcchHhHHHHHHHhcCC--CCHHHHHHHHhhhHHhHhhhcch-----hHHHHHHHHHHh
Q 000051 1276 VREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2612)
Q Consensus 1276 vr~~~i~~l~~La~~l~~~--~~~~~~i~~~L~~~L~~--~~~~Vq~~~~~~L~~lv~~~~~~-----~~~li~~ll~~L 1346 (2612)
+|+++...++.+++.+... .+....+++.++..+.+ ++.+++..+.+++...+...... ....+...+..+
T Consensus 146 ~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~ 225 (876)
T d1qgra_ 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 7888888898888655432 45677788888888864 46789999988887766544322 123344444445
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc------------
Q 000051 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------------ 1412 (2612)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~------------ 1412 (2612)
...+++..|..+..++..++...+..... ...+...+.....+. +...+..++..+..+++....
T Consensus 226 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 304 (876)
T d1qgra_ 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 55667889999999999999876543221 123555555566655 567777777777766643211
Q ss_pred ---------cchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHH
Q 000051 1413 ---------LFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2612)
Q Consensus 1413 ---------~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~ 1476 (2612)
....+...++|.+...+.+ ....+|.++..++..+....+...+..++|.+.+.+.+.+|+.|.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~ 384 (876)
T d1qgra_ 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHH
Confidence 0112334566666665532 344699999999999998888888888899999999999999999
Q ss_pred HHHHHHHHHHhh-CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-----hHhhHHHHHHhhcCCCC
Q 000051 1477 SSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLTDPN 1550 (2612)
Q Consensus 1477 ~a~~~L~~ia~~-~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-----~i~~ivp~Ll~~l~d~~ 1550 (2612)
+++..++.++.. .+..+..+++.+++.+...+.|+++.||.+|+++++.+++...+. .+..+++.+...+.+
T Consensus 385 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 462 (876)
T d1qgra_ 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-- 462 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC--
Confidence 999999998875 456778889999999999999999999999999999999876532 234444444444332
Q ss_pred hhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc------------CCCCcchhhHh
Q 000051 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV------------TEPKDMIPYIG 1618 (2612)
Q Consensus 1551 ~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~------------~~~~~l~~~l~ 1618 (2612)
++.++..++.++..+.... .....+.+|++
T Consensus 463 --------------------------------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (876)
T d1qgra_ 463 --------------------------------------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE 504 (876)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH
T ss_pred --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555554444321 01134678899
Q ss_pred hhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHH----HHHHHhccCC---CHHHH-------HHH
Q 000051 1619 LLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVS----WLLDALKSDN---SNVER-------SGA 1678 (2612)
Q Consensus 1619 ~ll~~L~~~L~d~---~~~VR~~A~~aL~~L~~~~g~~~---~~~ll~----~L~~~L~~~~---~~~~R-------~~a 1678 (2612)
.+++.+...+.+. ...+|..+..++..+......+. +..+++ .+...+.... ....+ ...
T Consensus 505 ~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 584 (876)
T d1qgra_ 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHH
Confidence 9999999888753 56789999999999888776552 223333 3333332211 11111 122
Q ss_pred HHHHHHHHHHhChhhH----HhHhHHHHHhccC--CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC-h
Q 000051 1679 AQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-E 1751 (2612)
Q Consensus 1679 a~~L~~i~~~~g~~~l----~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~-~ 1751 (2612)
...+..++...+.... +.+++.+.+.+.. .+..+++.++.+++.++..+|..|.||++.++|.++..+.+.. .
T Consensus 585 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~ 664 (876)
T d1qgra_ 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEY 664 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcH
Confidence 3344555555555433 4566666665543 4678999999999999999999999999999999999998654 5
Q ss_pred hHHHHHHHHHHHHHHHhhhc---hhhhhHHHHhhccCCCc--hHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch
Q 000051 1752 SVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDN--WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~---~i~~llp~L~~~l~d~~--w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~ 1826 (2612)
.+|..+...+..+....+.. ..+.+++.+.+.+.+.+ +.+|..++.++|+++..+++..
T Consensus 665 ~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~---------------- 728 (876)
T d1qgra_ 665 QVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEF---------------- 728 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGG----------------
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhh----------------
Confidence 69999999988887766554 34557777777776653 5689999999999986643110
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHc---cC--------CCHHHHHHHHHHHHHHHhcC----------hhhHHHHHHH
Q 000051 1827 EAHGRAIIEVLGRDKRNEVLAALYMVR---SD--------VSLSVRQAALHVWKTIVANT----------PKTLKEIMPV 1885 (2612)
Q Consensus 1827 ~~~~~~l~~~Lg~~~~~~vl~~L~~~~---~D--------~~~~VR~aA~~~l~~l~~~~----------~~~l~~~l~~ 1885 (2612)
.++.+.+++.+.... .| ....+|+..++++..+.... ...+.++++.
T Consensus 729 ------------~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 796 (876)
T d1qgra_ 729 ------------KKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEF 796 (876)
T ss_dssp ------------GGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHH
T ss_pred ------------HHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 011222222222211 01 11246777777777765421 1235566677
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhchhhh------hhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000051 1886 LMNTLISSLA--SSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1886 ll~~L~~~L~--~~~~~~R~~A~~aL~~lv~~~~~~~l------~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2612)
+++.+..... +.+..++..+..++++++..+|.... +.+.+.+.+..+++++..|..+.++..++
T Consensus 797 i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~ 869 (876)
T d1qgra_ 797 ILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7665544333 45678888999999999999998753 56677788888889999998877765543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.2e-13 Score=176.45 Aligned_cols=382 Identities=13% Similarity=0.156 Sum_probs=264.8
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhhC--
Q 000051 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR-- 1209 (2612)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~ala~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~~~-- 1209 (2612)
..+++.+.++|..+|+.|.+.+-.+.++. |+.+..++..+.+ . ..+-.+|..++..|+.......
T Consensus 3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-------~-----~~~~~~R~~A~i~lk~~l~~~~~~ 70 (458)
T d1ibrb_ 3 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDPD 70 (458)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHhhccCch
Confidence 45778888999999999999999888754 3334433333321 1 1234688888888876653211
Q ss_pred -------------CCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHH-hhCcchhhhhHHHHHHHhccCCCChHHhhh
Q 000051 1210 -------------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIID-KHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2612)
Q Consensus 1210 -------------~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~-~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~ 1275 (2612)
.+....+...++ .++.+.++.+|.. ..++..++. ..+...|+.+++.+.+.+..... ...
T Consensus 71 ~~~~~~~~~~~l~~~~~~~i~~~ll-~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 144 (458)
T d1ibrb_ 71 IKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRPSSA-SQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEH 144 (458)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSSCSH-HHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHH
T ss_pred hhhHHhhhhccCCHHHHHHHHHHHH-hccCCCcHHHHHH-HHHHHHHHHHhCCcccCcchhHHHHHHHHhhcc----hHH
Confidence 111122333343 5666666655544 344444443 45566788999988887765332 234
Q ss_pred HHhHHHHHHHHHhhhhccC--CcchHhHHHHHHHhcCC--CCHHHHHHHHhhhHHhHhhhcch-----hHHHHHHHHHHh
Q 000051 1276 VREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2612)
Q Consensus 1276 vr~~~i~~l~~La~~l~~~--~~~~~~i~~~L~~~L~~--~~~~Vq~~~~~~L~~lv~~~~~~-----~~~li~~ll~~L 1346 (2612)
.++.+...++.+....... .+....+++.+...+.+ ++.+|+..+.+++..++...... ....+...+..+
T Consensus 145 ~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (458)
T d1ibrb_ 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 224 (458)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHH
Confidence 5667777777777654332 34567788888888865 57889999999998877544321 122333444445
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc------------
Q 000051 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------------ 1412 (2612)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~------------ 1412 (2612)
....++..|..+..+|..++...+..... ...+...+.....+. +...|..++..+..+++....
T Consensus 225 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 303 (458)
T d1ibrb_ 225 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 303 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 55667889999999999998766532111 113444455555655 678888899888888764321
Q ss_pred ---------cchhhHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHH
Q 000051 1413 ---------LFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2612)
Q Consensus 1413 ---------~~~~~v~~ilp~ll~~l~-------D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~ 1476 (2612)
........++|.+...+. |.+..+|.++..++..++..+++..+..++|.+.+.+.+++|+.|.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~ 383 (458)
T d1ibrb_ 304 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 383 (458)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHH
Confidence 012234566676666654 3345699999999999999888777888999999999999999999
Q ss_pred HHHHHHHHHHhh-CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh
Q 000051 1477 SSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2612)
Q Consensus 1477 ~a~~~L~~ia~~-~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2612)
+++.+|+.+++. .++.+..+++.++|.+.+.++|+++.||.+|+++|+++++.++++
T Consensus 384 aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 384 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999975 456778889999999999999999999999999999999887643
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.7e-13 Score=172.22 Aligned_cols=392 Identities=17% Similarity=0.236 Sum_probs=279.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhC---------
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMG--------- 1651 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g--------- 1651 (2612)
..+-+++.++|..|.+.+..+... + .+..+..+...+.+ ....+|..|+..+........
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~--~-------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhc--C-------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 344466789999999999887762 1 23345555555544 357899999888876664322
Q ss_pred ------CCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC-hhhHHhHhHHHHHhccC--CChhhHhHHHHHHHH
Q 000051 1652 ------EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSH--QRASVRDGYLTLFKY 1722 (2612)
Q Consensus 1652 ------~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g-~~~l~~llp~l~~~~~~--~~~~vR~~~~~~l~~ 1722 (2612)
++....+.+.+++.+.++.. .+..++..++.++.... ...++++++.+.+.+.+ .++.++++++.++..
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 155 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETY--RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 155 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCS--SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 11233455566676665543 34456677777766544 44678888888887765 467789999999999
Q ss_pred hhhhhc-cchhhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhccCCCchHHHHH
Q 000051 1723 LPRSLG-VQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQS 1794 (2612)
Q Consensus 1723 L~~~~g-~~f~p~l~~iip~ll~~L~d~--~~~VR~~Al~al~~lv~~~~~~-----~i~~llp~L~~~l~d~~w~vR~~ 1794 (2612)
+....+ ..+.++...+++.++..+.++ ...+|..++.++..++...... ....+.+.+.....+.++.+|..
T Consensus 156 ~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (458)
T d1ibrb_ 156 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235 (458)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHH
Confidence 987765 456778899999999998754 4679999998888776433221 22346667777788999999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhc
Q 000051 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2612)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~ 1874 (2612)
+++.++.++...+.... ..+. +.+...+.....+....++..|+..|..++..
T Consensus 236 ~~~~l~~i~~~~~~~~~-----------------------~~l~----~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~ 288 (458)
T d1ibrb_ 236 ALQNLVKIMSLYYQYME-----------------------TYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDE 288 (458)
T ss_dssp HHHHHHHHHHHCGGGCT-----------------------TTTT----TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH-----------------------HHHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 99999998765331110 0000 00111122334566778999999999888643
Q ss_pred Ch---------------------hhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000051 1875 TP---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2612)
Q Consensus 1875 ~~---------------------~~l~~~l~~ll~~L~~~L~-------~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp 1926 (2612)
.. ......++.+.+.+...+. +.++..|..+..+++.++...|...++.++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ 368 (458)
T d1ibrb_ 289 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 368 (458)
T ss_dssp HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHH
Confidence 21 1123456666677666654 3345689999999999999999889999999
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-hhhhH
Q 000051 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-IDEIV 2005 (2612)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~-~~~il 2005 (2612)
.+.+.+++++|.+|.+++.+|+.++..+.+..+.++++.++|.+...+.|+++.||.+|+.+++++.+..+... .+.++
T Consensus 369 ~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l 448 (458)
T d1ibrb_ 369 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 448 (458)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHH
Confidence 99999999999999999999999876666677788999999999999999999999999999999988776433 34556
Q ss_pred HHHHHhc
Q 000051 2006 PTLLHAL 2012 (2612)
Q Consensus 2006 p~Ll~~L 2012 (2612)
|.++..|
T Consensus 449 ~~ll~~l 455 (458)
T d1ibrb_ 449 APLLQCL 455 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=4.1e-09 Score=150.98 Aligned_cols=255 Identities=11% Similarity=0.146 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhh------cCCChhhHHHHHHHHHHHHhhC--ch----------hhhhh
Q 000051 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL------EDKAWRTKQSSVQLLGAMAYCA--PQ----------QLSQC 1496 (2612)
Q Consensus 1435 ~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L------~~~~w~~r~~a~~~L~~ia~~~--p~----------~l~~~ 1496 (2612)
..|.++...+..+....+......+++.+.+.+ .+.+|+.+.+++.+++.++... .. .+...
T Consensus 376 ~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 455 (959)
T d1wa5c_ 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (959)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHH
Confidence 467778888888877766665555555554433 2468999999999999887421 11 11122
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ 1576 (2612)
+...+...+....+.++.+|..++++++.+......+....+++.+..
T Consensus 456 l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~-------------------------------- 503 (959)
T d1wa5c_ 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILAT-------------------------------- 503 (959)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--------------------------------
Confidence 222222222333556788999999999998876554444444444444
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC---------CCcchhhHhhhHHHHHHHhcCCCHHH-----HHHHHHH
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE---------PKDMIPYIGLLLPEVKKVLVDPIPEV-----RSVAARA 1642 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~---------~~~l~~~l~~ll~~L~~~L~d~~~~V-----R~~A~~a 1642 (2612)
.+.+.+..+|..|+.++..++..... .+.+.||++.++..+...+.+..... ......+
T Consensus 504 -------~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~ 576 (959)
T d1wa5c_ 504 -------FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576 (959)
T ss_dssp -------HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred -------HhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 44445567777788888877764322 13478999999999988886543222 3458889
Q ss_pred HHHHHhhhCCC---CchhhHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHhChhhH----HhHhHHHHHhccCCChh
Q 000051 1643 IGSLIRGMGEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRAS 1711 (2612)
Q Consensus 1643 L~~L~~~~g~~---~~~~ll~~L~~~L~----~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~l~~~~~~~~~~ 1711 (2612)
++.++...++. +...+++.+...+. +...........++++.++...|++.. +.++|.+....+.....
T Consensus 577 l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~ 656 (959)
T d1wa5c_ 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE 656 (959)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchh
Confidence 99999888865 34555555554432 222344455666778888777766543 44566666666555566
Q ss_pred hHhHHHHHHHHhhhhhc
Q 000051 1712 VRDGYLTLFKYLPRSLG 1728 (2612)
Q Consensus 1712 vR~~~~~~l~~L~~~~g 1728 (2612)
..+.++.++..+....+
T Consensus 657 ~~~~~~~l~~~~~~~~~ 673 (959)
T d1wa5c_ 657 FIPYVFQIIAFVVEQSA 673 (959)
T ss_dssp THHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 67777777777666554
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.5e-10 Score=153.98 Aligned_cols=470 Identities=14% Similarity=0.112 Sum_probs=294.1
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-c---cHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHHhcccch
Q 000051 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-E---GVESLVSELLKGVGD-NQASIRRSSAYLIGYFYKNSKLYL 2147 (2612)
Q Consensus 2073 ~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~---~l~~ll~~Ll~~l~~-~~~~vR~~A~~~L~~l~~~~~~~~ 2147 (2612)
...+|.|++.|++++..+|..+..++..+...-.. . .-..+++.++..+++ +++.++..++.++..++.......
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 35688899999999999999999999888653211 0 113567777777754 578899999999999875432111
Q ss_pred hccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2148 ~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
.-.-...++.|+.++.++++.++..|..+|..++...+.. ++.+..
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~---------~~~~~~------------------------- 141 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA---------KMAVRL------------------------- 141 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH---------HHHHHH-------------------------
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchh---------hhHHHh-------------------------
Confidence 1111256889999999999999999999999987654321 111110
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000051 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2612)
...+|.++..+.+++++.+..++.+++.++...........-.....+|++.+.......++..+..++..+... +..-
T Consensus 142 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~ 220 (529)
T d1jdha_ 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNK 220 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHH
T ss_pred cCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-cccc
Confidence 114677777788899999999999999998654322222222345678889887665677888888888876532 1111
Q ss_pred cCch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc---CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCC
Q 000051 2308 KPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALS---TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS 2383 (2612)
Q Consensus 2308 ~p~l-pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~---~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~ 2383 (2612)
.++. ....+.+.+.+.+++..++..++.++..+.... ......++.|+..+++.+..++..++.+|..+.......
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 300 (529)
T d1jdha_ 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred chhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHH
Confidence 1111 134667778889999999999999999885432 234678999999999889999999999998876421111
Q ss_pred cChHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhCChhH-HHHH------HHHHHhhcCC-CCchhhHHHHHHH
Q 000051 2384 VSSAVKIRVYSVLKDLV--YHDDDHVRVSAASILGIMSQCMEDGQ-LADL------LQELLNLASS-PSWAARHGSVLVF 2453 (2612)
Q Consensus 2384 ~~~~~~~~i~~~L~~~l--~~~~~~vr~~aa~~Lg~L~~~~~~~~-~~~~------l~~ll~~~~~-~~~~~~~~~~~~l 2453 (2612)
.........+..+...+ .+..+.++..++.+|+.++...+..+ .... ++.+...... .++.....+..++
T Consensus 301 ~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l 380 (529)
T d1jdha_ 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 380 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHH
Confidence 00011112233333333 23567888889999998886655432 1111 2223333332 3333444444455
Q ss_pred HHHHhhCC--ccccCCchhHHHHHHHHhhhcc---------------C---ChhHHHhHHHHHHHHHhhhhccCCCCchh
Q 000051 2454 ATFLRHNP--SAISMSPLFLSILDRLKSSLKD---------------E---KFPLREASTKALGRLLLHQIQSGPANTTV 2513 (2612)
Q Consensus 2454 ~~~l~~~p--~~~~~~~~~~~i~~~l~~~~~~---------------~---~~~ir~~a~~alg~ll~~~~~~~~~~~~~ 2513 (2612)
..+..... ..+...+..+.+++.+.....+ + ...+.+.+..+++.+...... ...
T Consensus 381 ~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~-----r~~ 455 (529)
T d1jdha_ 381 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN-----RIV 455 (529)
T ss_dssp HHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH-----HHH
T ss_pred hhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHH-----HHH
Confidence 54432211 1122233334444444322111 0 123445555555544322111 011
Q ss_pred h--HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hHHHHHHHhhhcCCcchhhhhHHHHHHHH
Q 000051 2514 V--VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHA 2584 (2612)
Q Consensus 2514 l--~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~~~~~~ 2584 (2612)
+ ...++.++..+.+++.++|+.++.+|..++++ ++ .+..+ ...++.|.+.+.+.+..||.+|-.|+..+
T Consensus 456 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~-~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HH-HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-hh-hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 1 23567888888899999999999999999865 22 23333 34789999999999999997777666543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1e-09 Score=145.73 Aligned_cols=461 Identities=11% Similarity=0.062 Sum_probs=293.7
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC-cch
Q 000051 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISS 1373 (2612)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-----~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~~ 1373 (2612)
..++.|++.|++.+.++|..++.++..+....... ....++.++..|...++...++.|+.+|..+..... ...
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 34788899999999999999999998876432211 246788888888877777889999999988875322 122
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000051 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1374 l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~-v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+.....++.|..++.+. ++..+..|+.++..++...+..-... -...+|.++..+.++++.++..+..++..+...-.
T Consensus 97 i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 175 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence 22346778888888876 78999999999999987654311111 23578999999999999999999999988865322
Q ss_pred HHh----HHhHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1453 AQG----VKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1453 ~~~----v~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
... -...++.++..+.. .....+..++.++..++........-.-...++.+...+.+.+.+++..++.++..+.
T Consensus 176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls 255 (529)
T d1jdha_ 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence 221 13456777777754 4457778888888887754322211112357788999999999999999999998876
Q ss_pred hhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc
Q 000051 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2612)
Q Consensus 1528 ~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~ 1607 (2612)
........ ....++.+.+.+.+.+..++..++.++++++..
T Consensus 256 ~~~~~~~~--------------------------------------~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~- 296 (529)
T d1jdha_ 256 DAATKQEG--------------------------------------MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCSC--------------------------------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred ccccchhh--------------------------------------hhhcchhhhhhcccccHHHHHHHHHHHHhhccc-
Confidence 53321100 012345555556666677788888888877642
Q ss_pred CCCCcchh--hHhhhHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCCHHHHH
Q 000051 1608 TEPKDMIP--YIGLLLPEVKKVL--VDPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERS 1676 (2612)
Q Consensus 1608 ~~~~~l~~--~l~~ll~~L~~~L--~d~~~~VR~~A~~aL~~L~~~~g~~-------~~~~ll~~L~~~L~~~~~~~~R~ 1676 (2612)
++ .... .-...++.+...+ ..+.+.++..+..+++.++...... .....++.++..+..+.....+.
T Consensus 297 -~~-~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~ 374 (529)
T d1jdha_ 297 -NY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp -CH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred -hh-HHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHH
Confidence 21 1111 1123455555555 3566889999999999887532221 01234667777777665554555
Q ss_pred HHHHHHHHHHHHhCh-hhH--HhHhHHHHHhccCC----------------------ChhhHhHHHHHHHHhhhhhccch
Q 000051 1677 GAAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1677 ~aa~~L~~i~~~~g~-~~l--~~llp~l~~~~~~~----------------------~~~vR~~~~~~l~~L~~~~g~~f 1731 (2612)
.+...+..+...... ..+ ...++.+++.+.+. .+.+.+.++.++..++.......
T Consensus 375 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~ 454 (529)
T d1jdha_ 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454 (529)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHH
Confidence 555555544322111 011 12334444333221 13445555666655553322110
Q ss_pred hhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchh--hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~-~~~i--~~llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
.---...++++.+.+.++++.+|..+..++..+...-. .+.+ ...++.+.+.+.++++.+|..+...+..+
T Consensus 455 ~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 00013478889999999999999999998877642210 1111 12567788888999999999888777654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=3.9e-07 Score=129.96 Aligned_cols=702 Identities=11% Similarity=0.087 Sum_probs=361.4
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhC-CC----Cc-----h
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMG-EE----NF-----P 1656 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~~g-~~----~~-----~ 1656 (2612)
++++|+.|.+.+..+.. .| .....|...+.++ ...+|..|+-.+...+...- +. .+ .
T Consensus 16 ~~~~~k~Ae~~L~~~~~---~p--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~ 84 (959)
T d1wa5c_ 16 IASTAKTSERNLRQLET---QD--------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (959)
T ss_dssp SGGGHHHHHHHHHHHHT---ST--------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred ChHHHHHHHHHHHHHHc---CC--------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHH
Confidence 55689999999888754 22 2344444444433 56899999999988877542 11 12 2
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch-----
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF----- 1731 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f----- 1731 (2612)
.+-..++..+.+. +...|...+.+++.++..-+++.|++++|.+.+.+++.++..+.+++.++..+++.+...+
T Consensus 85 ~Ik~~ll~~l~~~-~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~ 163 (959)
T d1wa5c_ 85 LIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDEL 163 (959)
T ss_dssp HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHH
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 2445556666544 4568889999999999888888899999999999999999999999999999987553211
Q ss_pred ----hhhHHhHHHHHHh-------hcCCCChh--HHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000051 1732 ----QNYLQQVLPAILD-------GLADENES--VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2612)
Q Consensus 1732 ----~p~l~~iip~ll~-------~L~d~~~~--VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~l 1798 (2612)
...++.+.+.+.. .+...... .-......+..+.+.+.......+.+.+.+ + -..-+..
T Consensus 164 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~ 235 (959)
T d1wa5c_ 164 FLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED-----N---IQVGMGI 235 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH-----T---HHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-----H---HHHHHHH
Confidence 1112222232222 22221110 001111111111111100000000000000 0 0001111
Q ss_pred HHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhh
Q 000051 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2612)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2612)
+..++... .... ...+++. ..+....++.....++..+....+..
T Consensus 236 ~~~~l~~~----~~~~--~~~~~~~-----------------------------~~~~~~~~~~~i~~~l~~~~~~~~~~ 280 (959)
T d1wa5c_ 236 FHKYLSYS----NPLL--EDPDETE-----------------------------HASVLIKVKSSIQELVQLYTTRYEDV 280 (959)
T ss_dssp HHHHHSCC----SCCC--C-----------------------------------CCCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhcc----cccc--cCchhhh-----------------------------hhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 12221110 0000 0000000 01112245666677777777777877
Q ss_pred HHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000051 1879 LKEIMPVLMNTLISSLA-----SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2612)
Q Consensus 1879 l~~~l~~ll~~L~~~L~-----~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2612)
+.++++.+++.+...+. .........+...+..+++....... .. ..+....-....+...+ .
T Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----------~~-~~~~l~~i~~~li~~~~-~ 348 (959)
T d1wa5c_ 281 FGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEI----------FN-NESAMNNITEQIILPNV-T 348 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGG----------GC-SHHHHHHHHHHTHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHH----------Hh-hhhHHHHHHHHHHHHHh-c
Confidence 88888887777666553 12233344444444443322110000 00 00000000000000000 0
Q ss_pred hChhhHHHhHhHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcc---C-CCcchHHHHHHHHH
Q 000051 1954 AGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE---D-DQTSDTALDGLKQI 2028 (2612)
Q Consensus 1954 ~~~~~l~~~l~~ll~~l~~~L~D-~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~---~-~~~~~~al~~L~~i 2028 (2612)
..+++...+...-...+..-..+ .....|.+|...+..+....+......+++.+...+. + ........+
T Consensus 349 ~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e----- 423 (959)
T d1wa5c_ 349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKD----- 423 (959)
T ss_dssp CCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHH-----
T ss_pred CCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHH-----
Confidence 11111111111111111222221 1234567777777777766555444444443333221 1 110000000
Q ss_pred hhhcccccccccchhhccCCcchhHHHHHHHHHHHh------------CCChhhhHhhHHHHHHHhcCCCCHHHHHHHHH
Q 000051 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA------------GPGLNFHLGTILPALLSAMGDDDMDVQSLAKE 2096 (2612)
Q Consensus 2029 l~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~------------g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~ 2096 (2612)
....++++++... ...+.+++...+...+....+..+.+|..+.+
T Consensus 424 -----------------------~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~ 480 (959)
T d1wa5c_ 424 -----------------------LYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480 (959)
T ss_dssp -----------------------HHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 1112233332210 11233444444334444445567889999999
Q ss_pred HHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcc-----------cchhccHHHHHHHHHHHhcCC
Q 000051 2097 AAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-----------LYLVDEAPNMISTLIVLLSDS 2165 (2612)
Q Consensus 2097 al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~-----------~~~~~~~~~il~~L~~ll~d~ 2165 (2612)
+++........+.+..+++.++..+.+++..+|..|+.++..++.... ..+.+|++.++..++..+.+.
T Consensus 481 ~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~ 560 (959)
T d1wa5c_ 481 YIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (959)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhh
Confidence 999887766667788999999999999999999999999999986432 347789999999999988654
Q ss_pred ChhH-----HHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHH--
Q 000051 2166 DSTT-----VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL-- 2238 (2612)
Q Consensus 2166 d~~V-----~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L-- 2238 (2612)
.... ......++..++...+....+. ...+++.+...+
T Consensus 561 ~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~-----------------------------------~~~i~~~l~~~~~~ 605 (959)
T d1wa5c_ 561 GSSPEKLAENEFLMRSIFRVLQTSEDSIQPL-----------------------------------FPQLLAQFIEIVTI 605 (959)
T ss_dssp CCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG-----------------------------------HHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHH
Confidence 4322 2335566666665544332221 111222222221
Q ss_pred --hc-CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHH
Q 000051 2239 --IS-GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQ 2315 (2612)
Q Consensus 2239 --~~-~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~ 2315 (2612)
.+ .++.......++++.++...+++....+...+.+.+..++... ..+....++..+..+....+. +.+.+.++.
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~ 683 (959)
T d1wa5c_ 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQSAT-IPESIKPLA 683 (959)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHHCSS-CCTTTGGGH
T ss_pred HhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 11 2345566778899999988776667777777777777776643 445666788888888776653 333333344
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHhcc----CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHH
Q 000051 2316 TTFIK-CLQDSTRTVRSSAALALGKLSALS----TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390 (2612)
Q Consensus 2316 ~~~~k-~L~d~~~~vR~~Aa~aLg~L~~~~----~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~ 2390 (2612)
+.++. .+.+... .-......+-.++..+ .....++.-+...+...+ .+..+..-+..++...+.....++.+
T Consensus 684 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l~ 760 (959)
T d1wa5c_ 684 QPLLAPNVWELKG-NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIK 760 (959)
T ss_dssp HHHTSGGGGCCTT-THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred HHHhhHHHHHHhh-hHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHhHHH
Confidence 43333 2222222 2223333343333222 223344444444443322 23445666777777776544467888
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhCChh
Q 000051 2391 RVYSVLKDLVYHD-DDHVRVSAASILGIMSQCMEDG 2425 (2612)
Q Consensus 2391 ~i~~~L~~~l~~~-~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2612)
.++..+...+... ...+.....-+++.++...++.
T Consensus 761 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (959)
T d1wa5c_ 761 QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796 (959)
T ss_dssp HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHH
Confidence 8888887777654 5666666677777776554443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.1e-09 Score=141.44 Aligned_cols=393 Identities=15% Similarity=0.160 Sum_probs=261.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
+..++..+..+++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.+ +++..+..++.+|..++...++....
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 94 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence 45566788888999999999999887653322 222 3589999999965 45788999999999999776554322
Q ss_pred h-hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC--hhH--hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC
Q 000051 1496 C-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2612)
Q Consensus 1496 ~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~ 1570 (2612)
. -..++|.+..++.+++++++..|.++|+.++..-.+ ..+ ...++.+...+..+....
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~----------------- 157 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST----------------- 157 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG-----------------
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhccccc-----------------
Confidence 2 246889999999999999999999999999853211 001 234444444443322110
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000051 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2612)
Q Consensus 1571 ~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~ 1650 (2612)
........+...+.+++... .+.....+...+++.+..++.+++++++..++.+++.++...
T Consensus 158 -----------------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 219 (434)
T d1q1sc_ 158 -----------------LACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 219 (434)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTCCC-TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred -----------------chHHHHHHHHHHHHHHhhcc-cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh
Confidence 01223334455666666532 112223456678899999999999999999999999987542
Q ss_pred CCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh--h-H-HhHhHHHHHhccCCChhhHhHHHHHHHH
Q 000051 1651 GEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2612)
Q Consensus 1651 g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~l~~~~~~~~~~vR~~~~~~l~~ 1722 (2612)
.+. ....++|.+.+.+.++. ...+..++.+++.++...... . + ...++.+...+.++++.+|+.++.++..
T Consensus 220 ~~~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~ 298 (434)
T d1q1sc_ 220 NERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 298 (434)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhHHHHhhcccchhcccccccch-hhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhh
Confidence 211 23457788888776654 557777777777765422111 1 1 3456778888889999999999999999
Q ss_pred hhhhhccchhhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-----hHHHHhhccCCCchHHHHHHH
Q 000051 1723 LPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-----LLPAVEDGIFNDNWRIRQSSV 1796 (2612)
Q Consensus 1723 L~~~~g~~f~p~l-~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~-----llp~L~~~l~d~~w~vR~~a~ 1796 (2612)
++........... ..++|.++..+.+.+..+|..+..++..+......+.... +++.+.+.+.+.+++++..++
T Consensus 299 l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l 378 (434)
T d1q1sc_ 299 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378 (434)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred hccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence 9865433222222 2378999999999999999999999988876654443322 577888888889999999999
Q ss_pred HHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 000051 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2612)
Q Consensus 1797 ~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2612)
..+..++...... . ..+.... ..+..| .+..+....++.+.+|++.|..++..+
T Consensus 379 ~~l~~ll~~~~~~-------------~-~~~~~~~-~~~~~~------~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 379 DAISNIFQAAEKL-------------G-ETEKLSI-MIEECG------GLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHHHHHHHHHTT-------------T-CHHHHHH-HHHHTT------SHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------------C-CcHHHHH-HHHHcC------CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9998887542111 0 0111111 122222 112222235677899999999888654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=3.2e-09 Score=136.88 Aligned_cols=389 Identities=16% Similarity=0.145 Sum_probs=246.2
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHH
Q 000051 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2612)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~ 1580 (2612)
+..+++.+++.+++++..|+.++..+...-.++.++.++ -..++|.
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~----------------------------------~~g~i~~ 60 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII----------------------------------RAGLIPK 60 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHH----------------------------------HTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH----------------------------------HCCCHHH
Confidence 455677888899999999999999887544432111100 0124555
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHhhccCCCCcchh-hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--C--C
Q 000051 1581 VHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--E--N 1654 (2612)
Q Consensus 1581 L~~~l~d-~s~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~--~--~ 1654 (2612)
|.+.+++ .++++|..++.++.+++.. .++.... .-...+|.+...+.++++.+++.|+.+|+.++..... + .
T Consensus 61 Lv~lL~~~~~~~v~~~a~~~L~~la~~--~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 138 (434)
T d1q1sc_ 61 FVSFLGKTDCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVI 138 (434)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcC--ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 5666543 3567888899999998753 2111111 1245789999999999999999999999998853221 1 1
Q ss_pred chhhHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHhCh----hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhh
Q 000051 1655 FPDLVSWLLDALKSDNSN----VERSGAAQGLSEVLAALGT----VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~----~~R~~aa~~L~~i~~~~g~----~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~ 1726 (2612)
-...++.+...+...... ......+..++.+...... .....++|.+...+.+.++.++..++.++..++..
T Consensus 139 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~ 218 (434)
T d1q1sc_ 139 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 218 (434)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh
Confidence 134566677776554322 1122333444444332211 13466788888888899999999999999888654
Q ss_pred hccchhhh--HHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHH
Q 000051 1727 LGVQFQNY--LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2612)
Q Consensus 1727 ~g~~f~p~--l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~ 1804 (2612)
.... .+. -..++|.+...+.+++..++..++.++..++.... .
T Consensus 219 ~~~~-~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~--------------------~-------------- 263 (434)
T d1q1sc_ 219 PNER-IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD--------------------E-------------- 263 (434)
T ss_dssp CHHH-HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH--------------------H--------------
T ss_pred hhhh-HHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhh--------------------H--------------
Confidence 3221 111 12356666666666666666666555443321000 0
Q ss_pred HhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHH
Q 000051 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP 1884 (2612)
Q Consensus 1805 ~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~ 1884 (2612)
....+.+ ..+++.+...+.+.+..+|..|+.++..++.+.+.....+..
T Consensus 264 ------------------------~~~~~~~-------~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 312 (434)
T d1q1sc_ 264 ------------------------QTQKVID-------AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312 (434)
T ss_dssp ------------------------HHHHHHH-------TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ------------------------HHHHHHh-------ccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhh
Confidence 0000110 012222333456778889999999999998766544333332
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh-----hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC---
Q 000051 1885 -VLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG--- 1955 (2612)
Q Consensus 1885 -~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~-----l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~--- 1955 (2612)
.+++.++..+.+++..+|..|..+++.++....... -..+++.|...+.+++++++..++.++..++....
T Consensus 313 ~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~ 392 (434)
T d1q1sc_ 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 392 (434)
T ss_dssp TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 367888888899999999999999999987755432 23457888888999999999999999988875322
Q ss_pred -hhhHHHhHh--HHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000051 1956 -KSQLLSFMD--ELIPTIRTALCDSILEVRESAGLAFST 1991 (2612)
Q Consensus 1956 -~~~l~~~l~--~ll~~l~~~L~D~d~~Vr~~A~~al~~ 1991 (2612)
...+...+. .+++.+.....++++++++.|...+..
T Consensus 393 ~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 393 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp CHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 111222221 245566666677899999998776654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=7.3e-08 Score=126.57 Aligned_cols=346 Identities=16% Similarity=0.166 Sum_probs=242.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcc-hh-----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc--c
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--S 1372 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~~-----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~ 1372 (2612)
.++.++..+..++.+.|..+..++..++..... .. ...++.+++.+....+...+..|+++|..++.+... .
T Consensus 77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456677778888888888887777665532221 11 124667777776666677899999999988864332 1
Q ss_pred hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000051 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2612)
Q Consensus 1373 ~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2612)
.+...++++.+...+.+. +...++.++.+++.++...+. ...++. .+++.++..+.+.++.++..+..++..+...
T Consensus 157 ~~~~~g~i~~l~~lL~s~-~~~i~~~a~~~L~nia~~~~~-~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp HHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCChHHHHHHhcCC-ChhHHHHHHHHHHHHhhhhHH-HHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence 222346788888888876 788999999999998853321 222222 4788889999999999998888888888753
Q ss_pred hcH----HhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000051 1451 LSA----QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2612)
Q Consensus 1451 l~~----~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2612)
-.+ ..+..++|.+...+.+.++..+..++.++..++...++.....+ ..+++.+..++.+.++.++..|+.+++.
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~n 314 (503)
T d1wa5b_ 235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 314 (503)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHH
Confidence 221 23567899999999999999999999999999876665443332 4678899999999999999999999999
Q ss_pred HHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000051 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2612)
Q Consensus 1526 l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~ 1605 (2612)
++..- +... ..+.. ..+++.+...+.+.++.++..++.++++++.
T Consensus 315 l~~~~--~~~~---~~~~~------------------------------~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~ 359 (503)
T d1wa5b_ 315 IVTGN--DLQT---QVVIN------------------------------AGVLPALRLLLSSPKENIKKEACWTISNITA 359 (503)
T ss_dssp HTTSC--HHHH---HHHHH------------------------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHH--HHHH---Hhhhc------------------------------cchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 87531 1110 11100 1245666667777788999999999999875
Q ss_pred ccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--Cc-----hhhHHHHHHHhccCCCHHHHHH
Q 000051 1606 LVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NF-----PDLVSWLLDALKSDNSNVERSG 1677 (2612)
Q Consensus 1606 ~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~--~~-----~~ll~~L~~~L~~~~~~~~R~~ 1677 (2612)
+.+....... ..+++.+...+.+.+++++..|+.+++.++...... .. .++++.+.+.|...+ ......
T Consensus 360 --~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d-~~~~~~ 436 (503)
T d1wa5b_ 360 --GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-NRIIEV 436 (503)
T ss_dssp --SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC-HHHHHH
T ss_pred --ccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC-HHHHHH
Confidence 2322222222 467888999999999999999999999998754332 11 346777888886654 334455
Q ss_pred HHHHHHHHH
Q 000051 1678 AAQGLSEVL 1686 (2612)
Q Consensus 1678 aa~~L~~i~ 1686 (2612)
+..++..++
T Consensus 437 ~L~~l~~ll 445 (503)
T d1wa5b_ 437 TLDALENIL 445 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=8.9e-08 Score=125.75 Aligned_cols=391 Identities=16% Similarity=0.138 Sum_probs=245.3
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhH
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~i 1577 (2612)
...++.+...++..+...+..|+.++..+...-.++.++.++ -..+
T Consensus 75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii----------------------------------~~g~ 120 (503)
T d1wa5b_ 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI----------------------------------QAGV 120 (503)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH----------------------------------HTTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHH----------------------------------HCCC
Confidence 344566677778888888888887777665322222111100 0124
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHhhccCCCCcchhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--C
Q 000051 1578 VPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--E 1653 (2612)
Q Consensus 1578 ip~L~~~l~-d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~--~ 1653 (2612)
+|.|...+. +.+..++..|+.++.+++.. ++...... -..+++.+...+.+++.+++..|+.+|+.++....+ +
T Consensus 121 i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~--~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~ 198 (503)
T d1wa5b_ 121 VPRLVEFMRENQPEMLQLEAAWALTNIASG--TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 198 (503)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHH
Confidence 455555554 34567888899999988763 22121112 235788899999999999999999999999863221 1
Q ss_pred C--chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh----hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhh
Q 000051 1654 N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT----VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2612)
Q Consensus 1654 ~--~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~----~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~ 1727 (2612)
. -..+++.++..+.+.. ...+..++..+..++..... .....++|.+...+.+.++.++..++.++..++...
T Consensus 199 ~l~~~~~~~~L~~ll~~~~-~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~ 277 (503)
T d1wa5b_ 199 YVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 277 (503)
T ss_dssp HHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhcccccchhhcccCC-HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence 1 2356777777776554 44666777788887754322 134678899999999999999999999998887643
Q ss_pred ccchhhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000051 1728 GVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2612)
Q Consensus 1728 g~~f~p~l~-~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~ 1806 (2612)
.......+. .+++.+...+.+++..++..++.++..+......
T Consensus 278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~------------------------------------ 321 (503)
T d1wa5b_ 278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL------------------------------------ 321 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH------------------------------------
T ss_pred chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHH------------------------------------
Confidence 332222222 3556666666666666655555554433211000
Q ss_pred cCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH-HH
Q 000051 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PV 1885 (2612)
Q Consensus 1807 ~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~ 1885 (2612)
....+.+ ..+++.+...+.+.+..+|..++.++..++.+.+.....++ ..
T Consensus 322 ----------------------~~~~~~~-------~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~ 372 (503)
T d1wa5b_ 322 ----------------------QTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 372 (503)
T ss_dssp ----------------------HHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ----------------------HHHhhhc-------cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHcc
Confidence 0000110 11344455556777888999999999999887665444443 35
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh-
Q 000051 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS- 1957 (2612)
Q Consensus 1886 ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~- 1957 (2612)
+++.++..+.+.+..++..|+.++..++...... .-..+++.+...+...++++...++.+|..++......
T Consensus 373 ~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~ 452 (503)
T d1wa5b_ 373 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 452 (503)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888888889999999999999998754321 12456777888888888988888888888776421110
Q ss_pred --------hHHHhH--hHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000051 1958 --------QLLSFM--DELIPTIRTALCDSILEVRESAGLAFS 1990 (2612)
Q Consensus 1958 --------~l~~~l--~~ll~~l~~~L~D~d~~Vr~~A~~al~ 1990 (2612)
.....+ ...+..+.....+++.++++.|...+.
T Consensus 453 ~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~ 495 (503)
T d1wa5b_ 453 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 495 (503)
T ss_dssp HHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 000111 123444444555678888887765543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=4e-07 Score=108.63 Aligned_cols=250 Identities=14% Similarity=0.078 Sum_probs=179.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhH
Q 000051 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2612)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~iv 1501 (2612)
.+.++.++.|+++.||..|..++..+. -+..+|.+++.+.++++.+|..|+.+|+.+...... .+.++
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~-------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~ 88 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-----EDNVF 88 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-----HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-----ccchH
Confidence 445678999999999999999987762 246778889999999999999999999987543221 12233
Q ss_pred HHHh-hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHH
Q 000051 1502 PKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1502 p~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
+.+. ..++|+++.||..|..+|+.++..-. .....+++.+...+.|+...+| .++..+... . -...++
T Consensus 89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~------~---~~~~~~ 158 (276)
T d1oyza_ 89 NILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVI------N---DKATIP 158 (276)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHccccc-hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhc------c---hHHHHH
Confidence 3333 35789999999999999999986532 2346788888888999988887 455555431 1 123456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll 1659 (2612)
.+...+.+.++.++..+...++.+... . ....+.+...+.++++.+|..+..+++.+. .+..+
T Consensus 159 ~l~~l~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-------~~~~~ 221 (276)
T d1oyza_ 159 LLINLLKDPNGDVRNWAAFAININKYD--N--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRVL 221 (276)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC--C--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGGH
T ss_pred HHHHhcccccchhhhhHHHHHHhhhcc--c--------cccchhhhhhhhhhhhhhhhhhccccchhh-------hhhhH
Confidence 777788888899998888777765432 1 235666778889999999999999887642 24567
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-CChhhHhHHHHHH
Q 000051 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 1720 (2612)
Q Consensus 1660 ~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~l 1720 (2612)
|.+++.+.++. +|..++.+|+++ |. +..+|.+...+.+ .+..+|..++..+
T Consensus 222 ~~L~~~l~d~~---vr~~a~~aL~~i----g~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 222 SVLCDELKKNT---VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HHHHHHHTSSS---CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHhCChH---HHHHHHHHHHHc----CC---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 77888776543 677888888765 33 2356666665554 4778998887765
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=4.7e-07 Score=107.96 Aligned_cols=195 Identities=19% Similarity=0.166 Sum_probs=135.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000051 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2612)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2612)
.+.|++.|+|+++.||..++.+|+.+ +. ++.++.+++.+. +.++.+|..|+.+|+.+....... ..+.+
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~----~~--~~~~~~l~~~l~-d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~ 89 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLR----GG--QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKCE----DNVFN 89 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CC--HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTTH----HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh----CC--HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccccc----cchHH
Confidence 56788999999999999999998754 22 345556665544 556889999999988664322211 12344
Q ss_pred HHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHH
Q 000051 1382 TLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2612)
Q Consensus 1382 ~L~~-~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2612)
.+.. .+.++ ++.+|..++.+++.++...+ .....+++.+...+.|+++.||..+..++..+. -...+
T Consensus 90 ~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-------~~~~~ 157 (276)
T d1oyza_ 90 ILNNMALNDK-SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN-------DKATI 157 (276)
T ss_dssp HHHHHHHHCS-CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CCH
T ss_pred HHHHHHhcCC-ChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-------hHHHH
Confidence 4444 34555 89999999999988876543 234577888888999999999988877765542 13445
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
+.+...+.+.+|..+..+...++.+.... +...+.+...+.|.+..+|..+..+++.++
T Consensus 158 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 216 (276)
T d1oyza_ 158 PLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 216 (276)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccccchhhhhHHHHHHhhhccc--------cccchhhhhhhhhhhhhhhhhhccccchhh
Confidence 66666777778888877776666544322 344556677788888999988888887654
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=7.3e-05 Score=94.80 Aligned_cols=398 Identities=12% Similarity=0.082 Sum_probs=203.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh--HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE- 1653 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~- 1653 (2612)
.+|.+.+.|++.+++++..|+.+|+++|.. + ++.... -...+|.|.+++.++++++|..|+.+|+.++....+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~--~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--D-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--C-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcC--C-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 478899999999999999999999999863 2 222222 2356899999999999999999999999998532221
Q ss_pred ---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh--hHHhHhHHHHHhc----------------cCCChhh
Q 000051 1654 ---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNC----------------SHQRASV 1712 (2612)
Q Consensus 1654 ---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~l~~llp~l~~~~----------------~~~~~~v 1712 (2612)
.-...++.++..+....+...|..++.++..+....... ....-++.+.... ...+..+
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 112347788888877666778888888888776543221 1122222222221 2236677
Q ss_pred HhHHHHHHHHhhhhhccc-hhhhHHhHHHHHHhhcCCC------ChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccC
Q 000051 1713 RDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE------NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785 (2612)
Q Consensus 1713 R~~~~~~l~~L~~~~g~~-f~p~l~~iip~ll~~L~d~------~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~ 1785 (2612)
++.++.++..+....... .......+++.+...+... .......+...+......... .....+..+.....
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA-EVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH-HSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHhhhh
Confidence 787877777665432210 0000112344444333211 001111111111110000000 00000000000000
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHH-HccCCCHHHHHHH
Q 000051 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAA 1864 (2612)
Q Consensus 1786 d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~-~~~D~~~~VR~aA 1864 (2612)
+ ..........++....................+... . ..+ .....++.+.. .....+..++..+
T Consensus 239 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~---~~~~~i~~l~~l~~~~~~~~~~~~~ 304 (457)
T d1xm9a1 239 N--AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG-S--------GWL---YHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp -----------------------------CCCCCSSCCG-G--------GGG---GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred h--hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHH-H--------HHH---HhhcHHHHHHHHHhcccchHHHHHH
Confidence 0 000000000111000000000000000000000000 0 000 01112222222 2344566778888
Q ss_pred HHHHHHHHhcChhhHHHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh--hhhhHHHHHhhhcCC--
Q 000051 1865 LHVWKTIVANTPKTLKEIM------PVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPILSRGLKD-- 1934 (2612)
Q Consensus 1865 ~~~l~~l~~~~~~~l~~~l------~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~--~l~~llp~L~~~L~d-- 1934 (2612)
...+..+............ ...++.++..+.++++.+|..++.+++.+....... +....+|.+...+..
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~ 384 (457)
T d1xm9a1 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccc
Confidence 8888777654432111111 234678889999999999999999999987543211 223344555554432
Q ss_pred ----CChhHHHHHHHHHHHHHHhhChhhHHHhH-hHHHHHHHHHhcC-CcHHHHHHHHHHHHHHH
Q 000051 1935 ----PSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD-SILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1935 ----~~~~vR~~a~~aL~~li~~~~~~~l~~~l-~~ll~~l~~~L~D-~d~~Vr~~A~~al~~l~ 1993 (2612)
.+++++..+|.+|..+..... +...... ...++.+...+.+ .++.++++|+.++..|.
T Consensus 385 ~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 385 GNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred cCcCCcHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 345789999999998864332 2222222 3467888887765 57889999998887763
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.7e-05 Score=99.01 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=93.4
Q ss_pred hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC------chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Q 000051 2272 ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP------FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345 (2612)
Q Consensus 2272 i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p------~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~ 2345 (2612)
+...++..+....+..++..+..++..+.......... .-...++.+++.++++++.+|..++.+++.+.....
T Consensus 284 ~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~ 363 (457)
T d1xm9a1 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence 44556666655456777777777777665322111000 002246678889999999999999999999964322
Q ss_pred Ch----hHHHHHHHHhhhcC------CHHHHHHHHHHHHHHHHhcCCCcChHH-HHHHHHHHHHhhcC-CCHHHHHHHHH
Q 000051 2346 RV----DPLVGDLLSSLQVS------DAGIREAILTALKGVLKHAGKSVSSAV-KIRVYSVLKDLVYH-DDDHVRVSAAS 2413 (2612)
Q Consensus 2346 ~~----~~~l~~Ll~~l~~~------d~~vr~~~l~AL~~vi~~~g~~~~~~~-~~~i~~~L~~~l~~-~~~~vr~~aa~ 2413 (2612)
.. ...++.++..+... +.+++..++.+|..+....+... ... ....+..|...+.+ .++.++.+|+.
T Consensus 364 ~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~ 442 (457)
T d1xm9a1 364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence 21 22356677776432 25789999999999875432211 111 12345566666655 46789999999
Q ss_pred HHHHHHh
Q 000051 2414 ILGIMSQ 2420 (2612)
Q Consensus 2414 ~Lg~L~~ 2420 (2612)
+|+.|+.
T Consensus 443 ~L~~L~~ 449 (457)
T d1xm9a1 443 LLSDMWS 449 (457)
T ss_dssp HHHTTSS
T ss_pred HHHHHHc
Confidence 9998863
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00023 Score=83.36 Aligned_cols=179 Identities=14% Similarity=0.051 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHhhcHH-hH--HhHHHHHHh-hhcCCChhhHHHHHHHHHHHHhhCchhh-hhhhchhHHHHhhhh
Q 000051 1434 VAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVL 1508 (2612)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~-~v--~~ilp~Ll~-~L~~~~w~~r~~a~~~L~~ia~~~p~~l-~~~L~~ivp~L~~~L 1508 (2612)
...|..|..++..+....... .+ -.-++.++. .+.+++..+|..|+.+|+.++...+..- .-.-...+|.++.++
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL 110 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 110 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence 356666777776666543221 11 122455554 5778889999999999999998765432 222357889999988
Q ss_pred c-CCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000051 1509 T-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1509 ~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
+ +.++.||..|+.+|..++....+ ... .+ .-...++.+.+.+.+
T Consensus 111 ~~~~~~~v~~~a~~aL~~l~~~~~~--~~~---------------------~~------------~~~~gi~~L~~lL~~ 155 (264)
T d1xqra1 111 DRDACDTVRVKALFAISCLVREQEA--GLL---------------------QF------------LRLDGFSVLMRAMQQ 155 (264)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHH--HHH---------------------HH------------HHTTHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHhccchh--hHH---------------------HH------------HHhhhhhHHHHHHhc
Confidence 5 67899999999999999864321 000 00 001245666677777
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
.+..++..++.++++++.. ++.....+. ...+|.+..++.++++.+|+.|..+|+.++..
T Consensus 156 ~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 156 QVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhc--cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 8889999999999998864 222222222 24789999999999999999999999999864
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.81 E-value=1.5e-06 Score=87.40 Aligned_cols=107 Identities=20% Similarity=0.327 Sum_probs=81.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh
Q 000051 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2612)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L 1508 (2612)
|+|+++.||..|..+++.+ ++ ..++.|++.|.+++|.+|..++.+|+.+.. +..+|.+.+++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l 62 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLL 62 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----CH----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhh
Confidence 5788899998887777654 22 345678888999999999999999886532 45678888899
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHH
Q 000051 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDIL 1560 (2612)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L 1560 (2612)
+|+++.||.+|+++|+.++. ...+|.|.+.+.|++..+| .|+.+|
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999998853 3456777777778877776 344443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00023 Score=83.32 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=113.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHh----H
Q 000051 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG----V 1456 (2612)
Q Consensus 1383 L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~----v 1456 (2612)
+..++.+. ++.+|..|+.+++.++..-+..-...+ ...+|.++..+. +.++.+|..+..++..++...++.. -
T Consensus 64 l~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 142 (264)
T d1xqra1 64 VGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR 142 (264)
T ss_dssp HHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH
Confidence 34455555 799999999999999975442111122 267899999885 7789999999999999887554331 1
Q ss_pred HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 000051 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2612)
...++.+++.+.+.+...+..++.+|+.++...+....... .+.+|.++.+++++++.+|..|+.+|..++...
T Consensus 143 ~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 143 LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 44578888999999999999999999999987766543332 357899999999999999999999999998643
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.23 E-value=0.00022 Score=71.01 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCC
Q 000051 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2612)
|+.+|..|+.+++.+ |. ..++.++..+.|+++.||..+..+++.+ .....+|.+.+.|.+++
T Consensus 5 ~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~-------~~~~~~~~L~~~l~d~~ 66 (111)
T d1te4a_ 5 NKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNF-------QDERAVEPLIKLLEDDS 66 (111)
T ss_dssp CCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGG-------CSHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhc-------chhhhHHHHHhhhccch
Confidence 677787777765542 21 2456678899999999999998887644 22456788889999999
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHH
Q 000051 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2612)
Q Consensus 1472 w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2612)
|.+|..++.+|+.+.. +..+|.+..+++|+++.||..|..+|.
T Consensus 67 ~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 67 GFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp THHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998742 456788888999999999999999875
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.91 E-value=0.00021 Score=80.40 Aligned_cols=180 Identities=21% Similarity=0.196 Sum_probs=107.8
Q ss_pred hhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhh
Q 000051 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2612)
Q Consensus 1466 ~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~ 1545 (2612)
.|.++.|.+|..|.. +++ +..|..+++|+++.||..|.+.|+ .+.+..+
T Consensus 50 ~l~~p~~e~Ra~Aa~-------~a~----------~~~L~~Ll~D~d~~VR~~AA~~Lp--------------~~~L~~L 98 (233)
T d1lrva_ 50 YLADPFWERRAIAVR-------YSP----------VEALTPLIRDSDEVVRRAVAYRLP--------------REQLSAL 98 (233)
T ss_dssp GTTCSSHHHHHHHHT-------TSC----------GGGGGGGTTCSSHHHHHHHHTTSC--------------SGGGGGT
T ss_pred HhcCCcHHHHHHHHh-------cCC----------HHHHHHHhcCCCHHHHHHHHHHcC--------------HHHHHHH
Confidence 566777877754421 222 234567889999999999876542 1345566
Q ss_pred cCCCChhHHHH-HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHH
Q 000051 1546 LTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 1624 (2612)
Q Consensus 1546 l~d~~~~~r~a-l~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L 1624 (2612)
+.|++..+|.+ ...+ . .+.+...+.|+++.+|..++..+ . .+.+
T Consensus 99 ~~D~d~~VR~~aa~~l---------~-------~~~L~~Ll~D~d~~VR~~aa~~~--------~-----------~~~L 143 (233)
T d1lrva_ 99 MFDEDREVRITVADRL---------P-------LEQLEQMAADRDYLVRAYVVQRI--------P-----------PGRL 143 (233)
T ss_dssp TTCSCHHHHHHHHHHS---------C-------TGGGGGGTTCSSHHHHHHHHHHS--------C-----------GGGG
T ss_pred hcCCChhHHHHHHhcc---------C-------HHHHHHHhcCCCHHHHHHHHhcc--------c-----------hhHH
Confidence 77888888743 2221 0 12344567888899988876421 1 0122
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHh
Q 000051 1625 KKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN 1704 (2612)
Q Consensus 1625 ~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~ 1704 (2612)
..++.|+++.||..++..+ +.+ .+.. +.++....+|..++..+ |. +.+...
T Consensus 144 ~~L~~D~d~~VR~~aA~~~-------~~~-------~L~~-l~~D~d~~VR~~aa~~L-------~~-------~~L~~l 194 (233)
T d1lrva_ 144 FRFMRDEDRQVRKLVAKRL-------PEE-------SLGL-MTQDPEPEVRRIVASRL-------RG-------DDLLEL 194 (233)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------CGG-------GGGG-STTCSSHHHHHHHHHHC-------CG-------GGGGGG
T ss_pred HHHhcCCCHHHHHHHHHhc-------CHH-------HHHH-HccCCCHHHHHHHHHhc-------Cc-------HHHHHH
Confidence 3456788899998776532 221 1222 23445566777766543 32 234455
Q ss_pred ccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHH
Q 000051 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2612)
Q Consensus 1705 ~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al 1758 (2612)
++++++.||..+.. . +-+.++..|.|+++.||.++.
T Consensus 195 ~~D~d~~VR~aaae-------~-----------~~~~ll~~L~D~d~~VR~aA~ 230 (233)
T d1lrva_ 195 LHDPDWTVRLAAVE-------H-----------ASLEALRELDEPDPEVRLAIA 230 (233)
T ss_dssp GGCSSHHHHHHHHH-------H-----------SCHHHHHHCCCCCHHHHHHHH
T ss_pred HhCCCHHHHHHHHH-------h-----------ccHHHHHHhCCCCHHHHHHHH
Confidence 67888888876542 1 123456778888888888775
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.69 E-value=0.00016 Score=81.35 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=100.6
Q ss_pred HHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHh
Q 000051 1702 IRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2612)
Q Consensus 1702 ~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~ 1781 (2612)
...+.++++.||..+... +|. +.+...+.|++..||..+...+ +. +.+.
T Consensus 72 ~~Ll~D~d~~VR~~AA~~-------Lp~----------~~L~~L~~D~d~~VR~~aa~~l-------~~-------~~L~ 120 (233)
T d1lrva_ 72 TPLIRDSDEVVRRAVAYR-------LPR----------EQLSALMFDEDREVRITVADRL-------PL-------EQLE 120 (233)
T ss_dssp GGGTTCSSHHHHHHHHTT-------SCS----------GGGGGTTTCSCHHHHHHHHHHS-------CT-------GGGG
T ss_pred HHHhcCCCHHHHHHHHHH-------cCH----------HHHHHHhcCCChhHHHHHHhcc-------CH-------HHHH
Confidence 344567777888766432 232 2345567788888887765432 21 3455
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHH
Q 000051 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2612)
Q Consensus 1782 ~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR 1861 (2612)
..+.|++|.+|..+.+-++. + .+.....|.+..||
T Consensus 121 ~Ll~D~d~~VR~~aa~~~~~--------------------------------------~-------~L~~L~~D~d~~VR 155 (233)
T d1lrva_ 121 QMAADRDYLVRAYVVQRIPP--------------------------------------G-------RLFRFMRDEDRQVR 155 (233)
T ss_dssp GGTTCSSHHHHHHHHHHSCG--------------------------------------G-------GGGGTTTCSCHHHH
T ss_pred HHhcCCCHHHHHHHHhccch--------------------------------------h-------HHHHHhcCCCHHHH
Confidence 56788888888876532100 0 00112468888899
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHH
Q 000051 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQ 1941 (2612)
Q Consensus 1862 ~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~ 1941 (2612)
..+...+ +. +.+...+.++++.+|..++..++ . +.+...++|+++.||.
T Consensus 156 ~~aA~~~-------~~----------~~L~~l~~D~d~~VR~~aa~~L~-------~-------~~L~~l~~D~d~~VR~ 204 (233)
T d1lrva_ 156 KLVAKRL-------PE----------ESLGLMTQDPEPEVRRIVASRLR-------G-------DDLLELLHDPDWTVRL 204 (233)
T ss_dssp HHHHHHS-------CG----------GGGGGSTTCSSHHHHHHHHHHCC-------G-------GGGGGGGGCSSHHHHH
T ss_pred HHHHHhc-------CH----------HHHHHHccCCCHHHHHHHHHhcC-------c-------HHHHHHHhCCCHHHHH
Confidence 8776532 21 23455577899999998876543 2 3456677899999998
Q ss_pred HHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHH
Q 000051 1942 GVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGL 1987 (2612)
Q Consensus 1942 ~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~ 1987 (2612)
.+...+ + +.+...|.|++++||+.|++
T Consensus 205 aaae~~-------~------------~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 205 AAVEHA-------S------------LEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHHS-------C------------HHHHHHCCCCCHHHHHHHHC
T ss_pred HHHHhc-------c------------HHHHHHhCCCCHHHHHHHHH
Confidence 876422 1 22446788999999998864
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.90 E-value=0.089 Score=62.17 Aligned_cols=198 Identities=14% Similarity=0.134 Sum_probs=109.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhhc--
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD----QVVAVREAAECAARAMMSQLS-- 1452 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D----~~~~VR~aa~~al~~i~~~l~-- 1452 (2612)
-+.++.+.+.+++-. .- .|..++..++.. .+.-.+++. .++..+.+ .++.+|..++-+++.++...-
T Consensus 89 a~~~i~~~I~~~~ls-~~-ea~~~l~~l~~~-~~Pt~~~l~----~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~ 161 (336)
T d1lsha1 89 ALLFLKRTLASEQLT-SA-EATQIVASTLSN-QQATRESLS----YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 161 (336)
T ss_dssp HHHHHHHHHHTTCSC-HH-HHHHHHHHHHHT-CCCCHHHHH----HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCC-HH-HHHHHHHHHhcc-CCCCHHHHH----HHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC
Confidence 445566667655322 22 233344455432 222233333 33344443 468899999888888876421
Q ss_pred -----HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcC-------CCHHHHHHHH
Q 000051 1453 -----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-------THPKVQSAGQ 1520 (2612)
Q Consensus 1453 -----~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D-------~~~~VR~aA~ 1520 (2612)
...++.+...+.+..+.++-..+..++.+||++.. +..++.+.+++.+ ....||.+|+
T Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi 231 (336)
T d1lsha1 162 TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAI 231 (336)
T ss_dssp CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHH
Confidence 22234444444455556666677778888888752 4555666666643 3578999999
Q ss_pred HHHHHHHhhcCChhHhhHHHHHHhhcCCCC--hhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhh-cCCCHHHHHHH
Q 000051 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-RERSAETKKKA 1596 (2612)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~--~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l-~d~s~~vr~~a 1596 (2612)
+|+..+.... | ..+.+.++....|+. ..+| .|+..+..+ .|... ++..+...+ .+++..|+...
T Consensus 232 ~Alr~~~~~~--p--~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~-~l~~i~~~l~~E~~~QV~sfv 299 (336)
T d1lsha1 232 MALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSVA-LVSMVAVRLRREPNLQVASFV 299 (336)
T ss_dssp HTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCHH-HHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHhhhcC--c--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHH-HHHHHHHHHHhCcHHHHHHHH
Confidence 9999887642 2 223333333333333 4466 456655432 12222 222333333 56677777777
Q ss_pred HHHHHHHhh
Q 000051 1597 AQIVGNMCS 1605 (2612)
Q Consensus 1597 ~~~l~~l~~ 1605 (2612)
...|.++++
T Consensus 300 ~S~l~~la~ 308 (336)
T d1lsha1 300 YSQMRSLSR 308 (336)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 777777665
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.01 E-value=6.1 Score=45.69 Aligned_cols=126 Identities=10% Similarity=0.109 Sum_probs=81.9
Q ss_pred CHhHHHHHHHHHHHHHHhcC----CCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhc
Q 000051 2285 PWQVKSAILSTLSIIIRKGG----IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV 2360 (2612)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~----~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~ 2360 (2612)
++.++..++.++|.++.+.- ..-..+++.+...+.+..+..+++-+..+.++||++. +|.. ++.|...+.+
T Consensus 140 ~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--~p~~---i~~l~~~l~~ 214 (336)
T d1lsha1 140 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--QPNS---IKKIQRFLPG 214 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CGGG---HHHHHTTSTT
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--CHhH---HHHHHHHhcc
Confidence 67788899999998887531 2224567778888888888888899999999999984 2333 3444444422
Q ss_pred -------CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhCChhH
Q 000051 2361 -------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ 2426 (2612)
Q Consensus 2361 -------~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~ 2426 (2612)
....+|..+++||+.+.... + ..+.+.+...+.+ .+.++|.+|...| ....|...
T Consensus 215 ~~~~~~~~~~~vR~aAi~Alr~~~~~~-----p---~~v~~~l~~i~~n~~e~~EvRiaA~~~l---m~t~P~~~ 278 (336)
T d1lsha1 215 QGKSLDEYSTRVQAEAIMALRNIAKRD-----P---RKVQEIVLPIFLNVAIKSELRIRSCIVF---FESKPSVA 278 (336)
T ss_dssp SSSCCCCSCHHHHHHHHHTTTTGGGTC-----H---HHHHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCCHH
T ss_pred cccccccccHHHHHHHHHHHHHhhhcC-----c---HHHHHHHHHHHcCCCCChHHHHHHHHHH---HhcCCCHH
Confidence 23679999999998664321 1 2233333444443 3678998776654 34456543
|
| >d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: BC3264-like domain: Hypothetical protein EF3068 species: Enterococcus faecalis [TaxId: 1351]
Probab=82.72 E-value=5.1 Score=43.03 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=92.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCch
Q 000051 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2612)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 2469 (2612)
+.+...+..+.+++.-+.|-.+..+++.......++.+ +++..++.. .++|..--.....+...+...+
T Consensus 49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~~l-~~~~~~~~~--~~~Wd~vD~~~~~i~~~~~~~~-------- 117 (213)
T d2b6ca1 49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLEEV-VAFKAYVPQ--KAWWDSVDAWRKFFGSWVALHL-------- 117 (213)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHH-HHGGGGTTT--TCSHHHHHHHHHHHHHHHHHSG--------
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHHHH-HHHHHHHcc--CccHHHHHHHHHHHHHHHHHhh--------
Confidence 44555566666777778888888888888776654332 344433332 3456543322222222222222
Q ss_pred hHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCch
Q 000051 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549 (2612)
Q Consensus 2470 ~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~ 2549 (2612)
+++.+.+.....+++...|+.|+.+. +.+- .. .+...++..+...+.|+..=||++...+|+.++++.|+
T Consensus 118 -~~~~~~l~~w~~s~~~w~rR~aiv~~---l~~~-~~-----~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~p~ 187 (213)
T d2b6ca1 118 -TELPTIFALFYGAENFWNRRVALNLQ---LMLK-EK-----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 187 (213)
T ss_dssp -GGHHHHHHHHTTCSSHHHHHHHHHTT---TTCG-GG-----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHH---HHHH-Hc-----ccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHCHH
Confidence 23456677778899999999876643 2221 11 12334455555667899999999999999999999999
Q ss_pred hhhhhHhH
Q 000051 2550 AIMVHVAL 2557 (2612)
Q Consensus 2550 ~v~~~l~~ 2557 (2612)
.|.+++..
T Consensus 188 ~v~~fl~~ 195 (213)
T d2b6ca1 188 WVEELMKE 195 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988753
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.12 E-value=43 Score=37.05 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=117.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc---chhhHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRL---FEPYVI---QMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~---~~~~v~---~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
+++..+...+..- ++..|.-+..+|..+...-... ...|+. +++..++.+..++ ++--.+...++.|...-
T Consensus 69 d~l~~Li~~L~~L-~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~--eiAl~~G~mLREcik~e 145 (330)
T d1upka_ 69 GLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP--EIALNCGIMLRECIRHE 145 (330)
T ss_dssp SHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHHHHHHHHHHHTSH
T ss_pred ChHHHHHHhCCCC-CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCc--chhhhhhHHHHHHHhhH
Confidence 4444555555544 6888888888888777532211 113443 6788888887655 33334444555554321
Q ss_pred --cHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc----hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHH
Q 000051 1452 --SAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2612)
Q Consensus 1452 --~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p----~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2612)
...-. ..-+-.+++.++.++..+-..|...+..+....+ +.+...+..++..+-+++..++--+|..+.+-|+
T Consensus 146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 11111 2233456677788888888888888887776543 4456667888888888999999999999999999
Q ss_pred HHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000051 1525 QVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2612)
Q Consensus 1525 ~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~ 1604 (2612)
.+...-.|- ..+.+.+.++ .-+..+...++|++..++..|..+..-+.
T Consensus 226 elLldr~N~------~vm~~Yvs~~--------------------------~nLkl~M~LLrd~sk~Iq~EAFhVFKvFV 273 (330)
T d1upka_ 226 ELLLDRHNF------TIMTKYISKP--------------------------ENLKLMMNLLRDKSRNIQFEAFHVFKVFV 273 (330)
T ss_dssp HHHHSGGGH------HHHHHHTTCH--------------------------HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHH------HHHHHHhCCH--------------------------HHHHHHHHHhcCchhhHHHHhhhHhhhhh
Confidence 887533221 1111111111 11234455666777777777777777665
Q ss_pred hc
Q 000051 1605 SL 1606 (2612)
Q Consensus 1605 ~~ 1606 (2612)
..
T Consensus 274 AN 275 (330)
T d1upka_ 274 AN 275 (330)
T ss_dssp HC
T ss_pred cC
Confidence 53
|