Citrus Sinensis ID: 000078

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130------2140------2150------2160------2170------2180------2190------2200------2210------2220------2230------2240------2250------2260------2270------2280------2290------2300------2310------2320------2330------2340------2350------2360------2370------2380------2390------2400-----

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHccccHHHHHHHHHcHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccc

cccccHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEccccccccccccHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHccccHHHEHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHcccccccccEEEEHHHHHccccHHccccHHHHccccHHHccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHcccccccccccccccHHccHcccccccccccHHcccccccccccccccHccccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHcccccccccccccccccccccccHHccccccccccHHccHcccccccccccccccccccccHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccHHHcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccHHHHccccccccccHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHcccccccccccccccccccc

mlrlsstvPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLnlhgtglknpqlESVVASVFKYimdkpnfstvfSQSVKITEINEQLLENLSDVLnlslperigiglalsdsenldalmcgkNFCMAQIERlcanpvpmnsaEQIQNIIMFLQRSSDLSKHVDSLMQILSLLqskdhtqfvlnpvlpdelhdatslrdldlfhecrdddFDDILAEMEKEMSMGDVmnelgygcsadasQCKEILSLFTPLTEITLSRILGAIARThaglednqntfSTFTLALgcstmsdlpplsswnVDVLVKAIKQlapntnwiRVVENldyegfyiptEEAFSFFMSVYKYacqepfplhavcgsvwknteGQLSFLRYavasppevftfahsarqlpyvdavpglklqsgqanhAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHvnpnivlrgfvdaqnmepdCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVqfgrsqdfsaqpfhhsgaLLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLdstprlqngeaadsstsegyaDDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGnlfeeyrffpkypeRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDAlrkpadskmfVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISsghlesdgasnpaahqhvssqatsgngevsgsgiTQLGQQLSSQIQLQqrsesvvddrhkvsaasssdmkpllssigqpssvaplgdtssaqKLHNavsapamlsissgfarpsrgvtstkfgsALNIETLVAAAERretpieapasevQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEILEpcqsslayqppnpwTMAILGLLAEIysmpnlkmnLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgasqpqlvpevkpaivsplghvdlpldvasppnsggpthllsqyaaplrlssgtlmedeKLAALgisdqlpsaqglfqasqsqspfsvsqlstpipnigthvIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSlahvtckeplrgsiSSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRkhregvgssffdpniyaqgsmgvpealrpkpghlsvsqQRVYEdfvrlpwqnqssqgshamsagsltssgdaaqasayglaggqgnqgysssagstgfdavsrpsdvasgttestsagflSTSLVHigaadggilhnsesesvnaaftpAATElyaadstepvkepgassqslpstaaperigssilepslqtrdaLDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYenasnnlhFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLaakpgspesLQQLIEIVRnpaananassgattakddkarqskdkkayshttanredynipesvdpdpvgfpeQVSMLFAEWYQicelpgsndaACTRYVLQLHqngllkgddmTDRFFRRLTEVSVAHClssevinpgtlqspqqsqsLSFLAIDIYAKLMLSILKccpveqgsskiFLLSKILTVTVKFILKDAeekkasfnprpyFRLFINWLldmssldpvadgsnfQILSAFANAFHvlqplkvpaFSFAWLELVShrsfmpklligngqkgwPYIQRLLVNLLQFLEPFlrnaelgvpvrfLYKGTLRVLLVLLHdfpeflcdyhftfcdvippsciQMRNIILsafprnmrlpdpstpnlkidllpeirdpprifSEVDAALRAKQMRADVDdylktgqpgssfLSELKQklllppseaasagtrynvplINSLVLYVGMQAIHQLQTRtshaqstgnnsSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAAnqlrypnnhthYFSFVLLYLYAEANQEIIQEQITRVLFERLivnrphpwgLLITFIELiknprynfwnqsfiRCAPEIEKLFESVArscgglkpvddsmvsgwvpdnth

mlrlsstvpsQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKqlapntnwirVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVvldstprlqngeaadsstseGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSaasssdmkpllSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGvtstkfgsalNIETLVAAAERRETPieapasevqdkISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKnlgswlgkltigrnqvlrareiDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSgivqrsvsiatqttkelvlKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKepgassqslpstaaperigSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTswviysdeerkfnrdITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAananassgattakddkarqskdkkayshttanredynipesVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDaeekkasfnprpYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKidllpeirdppRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGglkpvddsmvsgwvpdnth

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWlcldlldvlcqlSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVsgsgitqlgqqlssqiqlqqRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPaananassgattaKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTlqspqqsqslsFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

***********IRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVL***************************ANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI***************************************************************************************************************************GSALNIETLVA***************VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIK******SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT********************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL********GSSFFDPNIYA***********************VYEDFVRLPW********************************************************************FLSTSLVHIGAADGGIL***********************************************************DALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLA*******************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVIN************LSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN************IDLL********IF***********************************************GTRYNVPLINSLVLYVGMQAIHQLQT************SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPV**************

****SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHG***KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQR********DSLMQILSLLQSKDHTQFVLNPVL******AT*LRDLDLFHECRDD****************DVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHA**********TFTL************LSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPY***********GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK***************************KIPVILKLLKAH***********EIEKFQAVVLDSTPRLQN*****************AEANSYFHQMFSGQLTIEAMVQM**************IFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIER***********************************************************************************************************************************LNIETLVAAAER***********VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR**********************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRN*************QAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLS***************PNIYAQGSMGVP**************QRVYEDFV**********************************************************************************************************************************************PSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAA******************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCL******************LSFLAIDIYAKLMLSILKCCP**QGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST**********IRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPG*********************GTRYNVPLINSLVLYVGMQAIH***********************SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESV************************

********PSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQ***********GYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSG****************************GSGITQLG**********************************LSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLF**************STPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQN*******************AAQASAYGLAGGQ*******************************SAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADS********************ERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAAN****************************ANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQ************NNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2405	2.2.26 [Sep-21-2011]
Q6ZQ08		2375	CCR4-NOT transcription co	yes	no	0.300	0.304	0.436	1e-172
A5YKK6		2376	CCR4-NOT transcription co	yes	no	0.300	0.304	0.437	1e-172
A0JP85		2388	CCR4-NOT transcription co	yes	no	0.287	0.289	0.447	1e-172
A1A5H6		2374	CCR4-NOT transcription co	yes	no	0.301	0.305	0.434	1e-171
P87112		2100	General negative regulato	yes	no	0.490	0.561	0.280	1e-128
P25655		2108	General negative regulato	yes	no	0.276	0.314	0.262	7e-74
Q8Y5X6		365	3-dehydroquinate synthase	yes	no	0.029	0.197	0.370	0.0001

>sp\|Q6ZQ08\|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2	Back alignment and function desciption

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 343/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)

Query: 1637 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1691
            Q L A+    A   + Q + S +  ++L   SRD  AAL + QK  +GL +  S      
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679

Query: 1692 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1742
               +   HL +L A++D        C    K++T  +I   +E K+N +    LIR+ L+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1736

Query: 1743 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1798
            N+ +Y++H+A+ ++ G N  A  FA+ L++ L+ DE   + +  ++L + ++ L ++ A 
Sbjct: 1737 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAH 1796

Query: 1799 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1857
             +  +PE L QL+E+VR+             A  D+A    +   +S  +   E Y+   
Sbjct: 1797 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1842

Query: 1858 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1914
                DP G  E+   L  EW   Y        +  A + +V Q+HQ G+LK DD+  RFF
Sbjct: 1843 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1898

Query: 1915 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1970
            R  TE+ V       + +  NP    +P   ++  +  +D + +L+  ++K         
Sbjct: 1899 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1956

Query: 1971 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 2030
            +KI LL+K+L + V  +L+D + +++ F   PY R+FI  LL++++ + V +  NFQ L+
Sbjct: 1957 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2016

Query: 2031 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 2089
            AF N FH+L+P K P F +AWLEL+SHR F+ ++L     QKGWP   +LL++L ++L P
Sbjct: 2017 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2076

Query: 2090 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 2149
            FLRN EL  P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2077 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2136

Query: 2150 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 2209
            RNMRLPDP TPNLK+D+L EI   PRI +     +   Q + D+D YLKT  P  +FLS+
Sbjct: 2137 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2194

Query: 2210 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 2269
            L+  L +    +   G RYN+ LIN+LVLYVG QAI       +H  + G+  S++    
Sbjct: 2195 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2243

Query: 2270 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2329
            SA +DIFQ L  DLDTEGRYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQI
Sbjct: 2244 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2303

Query: 2330 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 2389
            TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2304 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2363

Query: 2390 PVDDSM 2395
                 M
Sbjct: 2364 QAQQVM 2369

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Mus musculus (taxid: 10090)

>sp\|A5YKK6\|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2	Back alignment and function description

>sp\|A0JP85\|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|A1A5H6\|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|P87112\|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1	Back alignment and function description

>sp\|P25655\|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3	Back alignment and function description

>sp\|Q8Y5X6\|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2405
255541160		2330	ccr4-not transcription complex, putative	0.967	0.999	0.741	0.0
449433000		2427	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.985	0.976	0.720	0.0
356523091		2424	PREDICTED: CCR4-NOT transcription comple	0.986	0.978	0.728	0.0
356504613		2327	PREDICTED: CCR4-NOT transcription comple	0.960	0.992	0.710	0.0
357512789		2410	CCR4-NOT transcription complex subunit [	0.978	0.976	0.693	0.0
357512787		2418	CCR4-NOT transcription complex subunit [	0.978	0.973	0.691	0.0
297734545		2452	unnamed protein product [Vitis vinifera]	0.984	0.965	0.683	0.0
359489261		2333	PREDICTED: CCR4-NOT transcription comple	0.966	0.996	0.671	0.0
297842912		2379	hypothetical protein ARALYDRAFT_887229 [	0.976	0.986	0.647	0.0
334182230		2377	CCR4-NOT transcription complex subunit 1	0.975	0.987	0.648	0.0

>gi\|255541160\|ref\|XP_002511644.1\| ccr4-not transcription complex, putative [Ricinus communis] gi\|223548824\|gb\|EEF50313.1\| ccr4-not transcription complex, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 3653 bits (9473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1785/2407 (74%), Positives = 2026/2407 (84%), Gaps = 79/2407 (3%)

Query: 1    MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL 60
            M  LSST+ +Q+RFLL SLNE N DSVFRELC+F E G++ S ++LQTC++H+N   T L
Sbjct: 1    MPTLSSTISNQVRFLLHSLNEDNLDSVFRELCKFTENGLDESIVVLQTCLEHVNFQRTDL 60

Query: 61   KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA 120
            KN QL+ V+ S+FK+++D+PNFSTV  QS++ +EI+E+ L+N S+VL+LSL E+I IGLA
Sbjct: 61   KNMQLQPVILSIFKFLLDRPNFSTVLCQSLRSSEISEEFLDNFSNVLHLSLSEKIAIGLA 120

Query: 121  LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI 180
            LSDSEN++  M  K FC+AQIE LC+NPV MNSA+QIQNI+MFLQ+S   +KHVD  +Q+
Sbjct: 121  LSDSENIETRMGAKKFCIAQIEELCSNPVSMNSAQQIQNIVMFLQQSEGHTKHVDPFLQM 180

Query: 181  LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN 240
            LSL+Q KD   F L P+L DE+ +A  LR++DLFHEC++++FD +LAEMEKEM+ G+++ 
Sbjct: 181  LSLVQPKDVFPFFLTPLLSDEMREANFLRNMDLFHECQENEFDALLAEMEKEMNAGEIVK 240

Query: 241  ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST 300
            ELGYGC+ D+S CKEILS F PLTE T+S+ILG IAR HAGLE+NQ+TFS F LALGCS 
Sbjct: 241  ELGYGCTFDSSHCKEILSNFLPLTESTISKILGTIARNHAGLEENQSTFSNFGLALGCSI 300

Query: 301  MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ 360
             +DLPPL SW++D+LVK IKQLAP TNWI+VVEN+DYEGFYIP EEAFSFFMSVY++A Q
Sbjct: 301  STDLPPLGSWDIDILVKTIKQLAPGTNWIKVVENMDYEGFYIPNEEAFSFFMSVYRHASQ 360

Query: 361  EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN 420
            + FP+H +CGSVWKN  GQLS L+YAV +PPEVFTFAHS RQL Y DAV G KLQ G AN
Sbjct: 361  DLFPVHVLCGSVWKNALGQLSLLKYAVLAPPEVFTFAHSGRQLVYNDAVHGQKLQVGHAN 420

Query: 421  HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA 480
            HAWL LDLL+VLCQL+E GH+S  RS+LEYPLK CPE+LLLGM+HINTAY L+QYEVSF 
Sbjct: 421  HAWLSLDLLEVLCQLAERGHSSSVRSILEYPLKHCPEILLLGMSHINTAYKLLQYEVSFT 480

Query: 481  VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM 540
            VFPMIIKST S+GMIL++WH+NPN+V+RGFVDA N+EPDCTI+IL+ICQELKILSSVL+M
Sbjct: 481  VFPMIIKSTTSSGMILYLWHINPNVVVRGFVDAYNIEPDCTIKILDICQELKILSSVLDM 540

Query: 541  IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF 600
            IP    IRLAV+AS+KEL+DLEKWL+ NL  YKD FFEE               FS++PF
Sbjct: 541  IPYAIGIRLAVLASRKELIDLEKWLTTNLIAYKDFFFEE---------------FSSKPF 585

Query: 601  HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS 660
            HH+ +++N+YME   + LK+LKA  GLI S++LS+E+E+    + DS PRLQNG +ADSS
Sbjct: 586  HHASSVVNIYMEASSIFLKVLKAQTGLIISSQLSDEMERLHITITDSNPRLQNGGSADSS 645

Query: 661  TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY 720
            T E ++DD+EAEANSYFHQMFSGQLTIEAMVQMLARFKES V+RE  IFECMIGNLFEEY
Sbjct: 646  TPEPFSDDVEAEANSYFHQMFSGQLTIEAMVQMLARFKESPVRREQLIFECMIGNLFEEY 705

Query: 721  RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE 780
            RFFPKYPERQL+IAAVLFGS+IKHQLVTHLTLGIALRGVLDALRKP DSKMF+FGTKAL+
Sbjct: 706  RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFIFGTKALD 765

Query: 781  QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVS 840
            QFVDRLIEWPQYCNHILQISHLR+TH+E+V+FIER LARISSGHLESDG +  A+H H  
Sbjct: 766  QFVDRLIEWPQYCNHILQISHLRTTHSEIVSFIERQLARISSGHLESDGNNGSASHHHGL 825

Query: 841  SQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQP 900
            SQA+SGNGE+    I Q  QQLSS + +QQR ES +D+RHKV  ASS+D K +LSS GQ 
Sbjct: 826  SQASSGNGELISVNIPQSVQQLSSTLNVQQRHESPLDERHKVFLASSNDTKSVLSSGGQ- 884

Query: 901  SSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRE 960
            SSVAPL D S AQK  +A  A AMLS S GF RPSRGVTSTKFGSALNI TL AAAERRE
Sbjct: 885  SSVAPLSDNSIAQK--SAAGATAMLSSSHGFIRPSRGVTSTKFGSALNIGTLEAAAERRE 942

Query: 961  TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1020
            TPIEAPASE+QDKISFIINNISA N+EAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF
Sbjct: 943  TPIEAPASEIQDKISFIINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1002

Query: 1021 HDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1080
            HDLYLKFLDKV+SKALN+EIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
Sbjct: 1003 HDLYLKFLDKVSSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1062

Query: 1081 RNQVLRAREIDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDI 1140
            RN VLR REIDPKSLIIE  E                   GL+  +         + F  
Sbjct: 1063 RNHVLRGREIDPKSLIIEAYEK------------------GLMIAV---------IPFTS 1095

Query: 1141 EVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHV 1200
            +VLFKNLGVDMKDI PTSLLKDRKRE+EGNPDFSNKDVG SQPQ+VPEVKP I+SPL HV
Sbjct: 1096 KVLFKNLGVDMKDIAPTSLLKDRKREMEGNPDFSNKDVGVSQPQIVPEVKPGIISPLNHV 1155

Query: 1201 DLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQS 1260
            DLPL+VA+PPN+ G THLL QYAAP+ LS GTL EDEKLAALG+SDQLP  QGLFQA+ +
Sbjct: 1156 DLPLEVANPPNAVGHTHLLPQYAAPVNLSVGTLTEDEKLAALGMSDQLPPGQGLFQATPN 1215

Query: 1261 QSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVS 1320
            QSPFSVSQL T +PN GT VIINQK  + GLHLHFQR+VP+ MDRA+KEIVS IVQRSVS
Sbjct: 1216 QSPFSVSQLPTALPNFGTLVIINQKFNSWGLHLHFQRLVPLVMDRAVKEIVSSIVQRSVS 1275

Query: 1321 IATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQ 1380
            IATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLR SIS+QLRNSLQ
Sbjct: 1276 IATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRNSISTQLRNSLQ 1335

Query: 1381 GLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGS 1440
            GL   S+LLE AVQL TNDNLDLGCA IEQAATDKAIQTID EIAQQLSLRRKHR+GVG 
Sbjct: 1336 GLNSTSDLLEHAVQLATNDNLDLGCAAIEQAATDKAIQTIDAEIAQQLSLRRKHRDGVGP 1395

Query: 1441 SFFDPNIYAQGSMGV-PEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLT 1499
            +FFD N+Y+QGSMGV PEALRPKPGHLSVSQQRVYEDFVRLPWQNQS QGSH +  GS T
Sbjct: 1396 TFFDANLYSQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSGQGSHTIPMGSST 1455

Query: 1500 SSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHI 1559
            S+   A A AYG   GQ N GYSS+ G+ GF+AVSR  D+ S  TES SA  LS+S +HI
Sbjct: 1456 SAVSTALAGAYGSGSGQLNPGYSSAPGNVGFEAVSRTLDMGSDATESNSAAILSSSSIHI 1515

Query: 1560 GAADGGILHNSESESVNAAFTPAA-TELYAADSTEPVKEPGASSQSLPSTAAPERIGSSI 1618
            GA DG I  NSE+ + + +F+ AA    ++ D+++ VKE G SSQ + S+AA +R+ +S 
Sbjct: 1516 GATDGAIQPNSENSATSVSFSSAAPASEHSGDTSDTVKELGISSQPISSSAASDRLVTSA 1575

Query: 1619 LEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQ 1678
             EP+L TRDALDKY IVAQKL+AL+ +D RE E+QG+I+EVPEIILRC+SRDEAALAVAQ
Sbjct: 1576 SEPTLNTRDALDKYQIVAQKLEALVSSDGREVEIQGLITEVPEIILRCVSRDEAALAVAQ 1635

Query: 1679 KVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIR 1738
            KVFKGLYENASNN H +A LAILAAIRDVCKLVVKELTSWVIYSDEERKFN+DIT+GLIR
Sbjct: 1636 KVFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIR 1695

Query: 1739 SELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAA 1798
            SELLNLAEYNVHMAKLIDGGRNK ATEF+ISL+Q LV +ES+V ISELHNLVDALAKLAA
Sbjct: 1696 SELLNLAEYNVHMAKLIDGGRNKGATEFSISLIQALVVEESKV-ISELHNLVDALAKLAA 1754

Query: 1799 KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPES 1858
            KPGS ESLQQLIEIVRNP AN+   SG T  K+DK+RQS+DKK                 
Sbjct: 1755 KPGSSESLQQLIEIVRNPVANSAVISGFTVGKEDKSRQSRDKK----------------- 1797

Query: 1859 VDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLT 1918
                       VS+LFAEW++IC+LPG+NDAA T Y+LQLHQNGLLKGDDMTDRFFR +T
Sbjct: 1798 -----------VSLLFAEWFRICDLPGANDAASTHYILQLHQNGLLKGDDMTDRFFRIIT 1846

Query: 1919 EVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSK 1978
            E+SVAHCLSSEVIN G LQSPQQ Q+LSFLAIDIYAKL+ SILK   VEQGS++ FLLSK
Sbjct: 1847 ELSVAHCLSSEVINSGALQSPQQGQNLSFLAIDIYAKLVFSILK---VEQGSNRFFLLSK 1903

Query: 1979 ILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHV 2038
            IL VTV+FI KD+EEKK SFNPRPYFRLF+NWLLD+ S DP+ DG+N QIL+AFANAFH 
Sbjct: 1904 ILAVTVRFIQKDSEEKKLSFNPRPYFRLFVNWLLDLVSPDPIIDGTNLQILTAFANAFHN 1963

Query: 2039 LQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGV 2098
            LQPLKVPAFSFAWLELVSHRSFMPKLL GN QKGWPY+QRLLV+L QFLEPFLR+AELG+
Sbjct: 1964 LQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQFLEPFLRSAELGM 2023

Query: 2099 PVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPS 2158
            PV FLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPS
Sbjct: 2024 PVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPS 2083

Query: 2159 TPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPP 2218
            TPNLKIDLLPEIR+ P I SEVDAAL+AKQM+ADVD+YLKT   GSSFLSELKQ+LLL P
Sbjct: 2084 TPNLKIDLLPEIREAPHILSEVDAALKAKQMKADVDEYLKTRHQGSSFLSELKQRLLLSP 2143

Query: 2219 SEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQT 2278
            SEAASAGTRYNVPLINSLVLY GMQAI QLQ R  H+QS+GN + L   LV AALDI+QT
Sbjct: 2144 SEAASAGTRYNVPLINSLVLYAGMQAIQQLQARAPHSQSSGNTAPLAVLLVDAALDIYQT 2203

Query: 2279 LIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLI 2338
            LI +LDTEGRYLFLNA ANQLRYPNNHTHYFSFVLLYL+AE+NQEIIQEQITRVL ERLI
Sbjct: 2204 LIVELDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQEQITRVLLERLI 2263

Query: 2339 VNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSG 2398
            VNRPHPWGLLITFIELIKNPRYNFWN+SFIRCAPEIEKLFESVARSCGGLKP+D+SMVSG
Sbjct: 2264 VNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPMDESMVSG 2323

Query: 2399 WVPDNTH 2405
            WV + TH
Sbjct: 2324 WVSEGTH 2330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449433000\|ref\|XP_004134286.1\| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356523091\|ref\|XP_003530175.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356504613\|ref\|XP_003521090.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357512789\|ref\|XP_003626683.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520705\|gb\|AET01159.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357512787\|ref\|XP_003626682.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520704\|gb\|AET01158.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297734545\|emb\|CBI16596.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359489261\|ref\|XP_003633901.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842912\|ref\|XP_002889337.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata] gi\|297335179\|gb\|EFH65596.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334182230\|ref\|NP_001184889.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] gi\|332189257\|gb\|AEE27378.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2405
ZFIN\|ZDB-GENE-040915-1		2375	cnot1 "CCR4-NOT transcription	0.305	0.309	0.423	2.1e-302
MGI\|MGI:2442402		2375	Cnot1 "CCR4-NOT transcription	0.215	0.218	0.514	4.6e-296
UNIPROTKB\|G3V7M0		2376	Cnot1 "RCG39079" [Rattus norve	0.215	0.218	0.514	4.7e-296
DICTYBASE\|DDB_G0276029		2526	DDB_G0276029 "putative CCR4-NO	0.166	0.158	0.585	2.8e-292
UNIPROTKB\|E1BXD4		2129	LOC100858397 "Uncharacterized	0.215	0.243	0.516	1e-289
UNIPROTKB\|F1MHU9		2371	CNOT1 "Uncharacterized protein	0.215	0.218	0.514	4.8e-278
UNIPROTKB\|F1RFU3		2375	CNOT1 "Uncharacterized protein	0.215	0.218	0.514	6.3e-278
UNIPROTKB\|A5YKK6		2376	CNOT1 "CCR4-NOT transcription	0.215	0.218	0.514	6.4e-278
FB\|FBgn0085436		2505	Not1 "Not1" [Drosophila melano	0.327	0.314	0.393	3.2e-229
WB\|WBGene00002845		2641	let-711 [Caenorhabditis elegan	0.269	0.245	0.365	6.8e-186

ZFIN\|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1400 (497.9 bits), Expect = 2.1e-302, Sum P(6) = 2.1e-302
 Identities = 327/773 (42%), Positives = 451/773 (58%)

Query:  1637 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNNLHFS 1695
             Q L A+    A   + Q + S +  +++   SRD  AAL + QK  +GL +  S      
Sbjct:  1621 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSG----- 1675

Query:  1696 AHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLI 1755
             A   +L + R+   LV+K L     Y  +    N+ IT  LI  E  +  +YNV   +L+
Sbjct:  1676 ADPELLLSYRECHLLVLKALQDGRAYGPQW--CNKQITRCLI--ECRDEYKYNVEAVELL 1731

Query:  1756 DGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALA--KLAAKPGSPESLQQLIE-I 1812
                      ++ + L Q++    + + ++    LV  L   + +    +   L   IE +
Sbjct:  1732 IRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETL 1791

Query:  1813 VRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTA-NREDYN-IPESVD-PDPVGFPEQ 1869
             +R                 D  R + +     H    N   ++ I ++ +  DP G  E+
Sbjct:  1792 MRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREK 1851

Query:  1870 VSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTE--VSVAH 1924
                L  EW   Y        +  A + +V Q+HQ G+LK DD+  RFFR  TE  V +++
Sbjct:  1852 AEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISY 1911

Query:  1925 CLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIFLLSKILTVT 1983
                +E  +P T           +  +D + +L+  ++K       + +KI LL+K+L + 
Sbjct:  1912 RAQAEQQHPTTSPAIIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIV 1969

Query:  1984 VKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLK 2043
             V  +++D + ++  F   PY R+FI  LL++++ + V +  NFQ L+AF N FH+L+P K
Sbjct:  1970 VGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTK 2029

Query:  2044 VPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRNAELGVPVRF 2102
              P F +AWLEL+SHR F+ ++L    Q KGWP   +LL++L ++L PFLRN EL  P++ 
Sbjct:  2030 APGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQI 2089

Query:  2103 LYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNL 2162
             LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNL
Sbjct:  2090 LYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNL 2149

Query:  2163 KIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAA 2222
             K+D+L EI   PRI +     + + Q + D+D YLKT  P  +FLSEL+  L +    + 
Sbjct:  2150 KVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSNLQV----SN 2203

Query:  2223 SAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQD 2282
               G RYN+ LIN+LVLYVG QAI       +H  + G+  S++    SA +DIFQ L  D
Sbjct:  2204 EPGNRYNIQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHMDIFQNLAVD 2256

Query:  2283 LDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRP 2342
             LDTEGRYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQITRVL ERLIVNRP
Sbjct:  2257 LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRP 2316

Query:  2343 HPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 2395
             HPWGLLITFIELIKNP + FW+  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct:  2317 HPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2369

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI\|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

FB\|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00002845 let-711 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		2405
pfam04054		375	pfam04054, Not1, CCR4-Not complex component, Not1	1e-180
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	2e-87
pfam12842		147	pfam12842, DUF3819, Domain of unknown function (DU	1e-63
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	6e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	5e-39
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	2e-34

>gnl\|CDD\|217865 pfam04054, Not1, CCR4-Not complex component, Not1	Back alignment and domain information

 Score =  554 bits (1429), Expect = e-180
 Identities = 201/385 (52%), Positives = 258/385 (67%), Gaps = 19/385 (4%)

Query: 2009 NWLLDMSSLDPVADGSNF-QILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIG 2067
            + L +++ LD +       Q   AFA   H LQP+K P F FAWLEL+SHR F+P++L  
Sbjct: 1    SLLYELNRLDSLESKELDSQFYLAFAEYLHSLQPIKYPGFVFAWLELISHRMFLPRMLRL 60

Query: 2068 NGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHF 2127
              QKGWP   +LL++LL+FL+ FL+NA L   V+ LYKGTLR+LLVLLHDFPEFL +YH+
Sbjct: 61   PNQKGWPLYVKLLIDLLKFLDEFLKNANLSDAVKVLYKGTLRILLVLLHDFPEFLIEYHY 120

Query: 2128 TFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 2187
              CD IPP+CIQ+RN+ILSAFP+NM+LPDP TP LK+D LPEI++ P+I  +  A L++ 
Sbjct: 121  QLCDAIPPNCIQLRNLILSAFPKNMKLPDPFTPGLKVDRLPEIKEAPKILYDPVADLQSA 180

Query: 2188 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLYVGMQ 2243
             ++  VD+YL+   P  S L  +   L L   E          + NV LIN+LVL+VG+Q
Sbjct: 181  GLKKPVDNYLRIR-PSESLLRTICNGLYLSEDEQTVGIGYDPVKVNVKLINALVLHVGIQ 239

Query: 2244 AIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPN 2303
            A+               N++      S  + +   L  +LD EGRY  LNA ANQLRYPN
Sbjct: 240  AV-------LEILKKSQNANF--NTKSPHMALLSNLANELDPEGRYYLLNAIANQLRYPN 290

Query: 2304 NHTHYFSFVLLYLY----AEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPR 2359
            +HTHYFS V+L+L+     E+ +E IQEQITRVL ERLIVN+PHPWGLLITFIELIKNP 
Sbjct: 291  SHTHYFSCVILHLFGSDEWESQKEDIQEQITRVLLERLIVNKPHPWGLLITFIELIKNPD 350

Query: 2360 YNFWNQSFIRCAPEIEKLFESVARS 2384
            Y FW   FI+ APEIEKLF+S+ARS
Sbjct: 351  YKFWELPFIKSAPEIEKLFDSLARS 375

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819)	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2405
COG5103		2005	CDC39 Cell division control protein, negative regu	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	100.0
PF04054		379	Not1: CCR4-Not complex component, Not1; InterPro:	100.0
PF12842		147	DUF3819: Domain of unknown function (DUF3819); Int	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	93.15
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	90.06
KOG1467		556	consensus Translation initiation factor 2B, delta	82.32
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	80.19

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.2e-289  Score=2638.37  Aligned_cols=1906  Identities=26%  Similarity=0.404  Sum_probs=1478.8

Q ss_pred             CCcHHHHHHHHHhhhhhchHHHHHHHHHHHh-hccchhhHHHhhhhccc--ccCCCCCCCch---HHHHHHHHHHHhhcC
Q 000078            6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHL--NLHGTGLKNPQ---LESVVASVFKYIMDK   79 (2405)
Q Consensus         6 ~~~~~qi~~l~~~~~~~n~~~~~~e~~~~~~-~g~~~~~~~l~~~~~~~--~~~~~~~k~~~---~~~ll~~~~~~~~~k   79 (2405)
                      +.+-+||.+|++.|++.||++.-+||.|+++ ..++--+|++|.++-.-  +.-| .||...   --.+|-+|++.++.|
T Consensus        25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~-tGK~~~~~a~~~~LL~Elks~~~K  103 (2005)
T COG5103          25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFG-TGKSSDGLATYKLLLDELKSLTKK  103 (2005)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhc-cCcccchhHHHHHHHHHHHhhhhh
Confidence            4577999999999999999999999999997 99999999999999533  3222 244333   457888999999987


Q ss_pred             CCccchhhhhccCcccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcC----CCC--CCC
Q 000078           80 PNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCAN----PVP--MNS  153 (2405)
Q Consensus        80 p~f~t~~c~A~~~~~~~~~~l~~l~~~L~ls~~q~v~~~laL~~s~~~~~~~~~~~f~~~~~~~l~~~----~~~--~~~  153 (2405)
                      -.     ..|+.+..  ++-|+++    ++    |..+||.++             .++...-.+. |    |++  +..
T Consensus       104 r~-----sD~Is~~d--sevFed~----~F----Q~siGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~d  154 (2005)
T COG5103         104 RF-----SDAISGSD--SEVFEDF----HF----QFSIGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSID  154 (2005)
T ss_pred             hh-----hhHhhcch--hhhhcch----hh----hhhhhhhHH-------------HHHHHHHHHH-hhccchHhhhhcc
Confidence            54     66776642  2223333    11    111444443             1222222211 2    111  110


Q ss_pred             HHHHHHHHHHHhcccchhH-hHHHHHHHHHhhcCCCCCCccccCCcCCcccccccccccccccCCCCcchHHHHHHhhcc
Q 000078          154 AEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKE  232 (2405)
Q Consensus       154 ~~~l~~il~~l~~~~~l~~-~~~~f~~~l~~~~~~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (2405)
                      -+-+    -.|++  |-.. ...-|.+.+.-.--+.      .|+             .. +.+.++.+- +.       
T Consensus       155 ~NDl----d~lr~--~~Tdydr~~f~q~i~~~Le~s------~~~-------------~~-~~~p~e~~~-~~-------  200 (2005)
T COG5103         155 KNDL----DLLRE--GTTDYDRKIFRQEIKDVLEKS------DPL-------------TA-LFGPREVDR-SF-------  200 (2005)
T ss_pred             cchH----HHHhc--CCchHHHHHHHHHhHHHHHcC------Cch-------------hh-hcCcchhhH-HH-------
Confidence            0000    00111  2110 0111222111110000      001             00 000011000 01       


Q ss_pred             CcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCCH
Q 000078          233 MSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNV  312 (2405)
Q Consensus       233 ~sl~~~i~elG~~~t~s~~~c~~~L~~~~~l~~~~va~vlg~ma~t~sgl~d~~~~~~~~~~~~g~~~~~~~~~~~~Wn~  312 (2405)
                        |++.              ..++|+-.+.-++.|||+.+-.|+.-                          ++.+.||.
T Consensus       201 --l~~~--------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~~  238 (2005)
T COG5103         201 --LDDA--------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWNL  238 (2005)
T ss_pred             --HHHH--------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccch
Confidence              1111              23445544468889999985444422                          22467999


Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhCC
Q 000078          313 DVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASP  390 (2405)
Q Consensus       313 ~v~v~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~Fpi~~l~~~~W~N~~~-Qlsfl~~~l~~p  390 (2405)
                      -..+.+++..+..+||.+|..+||.+.|.|+....+..++.+|-. +.+.+||.+.+|. .|||... ||++.-|..+.+
T Consensus       239 v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~~  317 (2005)
T COG5103         239 VAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESDE  317 (2005)
T ss_pred             HHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeecc
Confidence            999999999999999999999999999999977666666555554 4567899999995 9999999 566666667777


Q ss_pred             CcccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc--
Q 000078          391 PEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI--  466 (2405)
Q Consensus       391 ~~~f~f~~-~~~~~v~~d~~~~~~~~~-~~~~~~W~sldLie~L~~Lae~~~~~~v~~l~~~p~~~~pe~lllgl~~i--  466 (2405)
                      ...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++|   ....||.+.+||..+  
T Consensus       318 ~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~  393 (2005)
T COG5103         318 KRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQP  393 (2005)
T ss_pred             cchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhhh
Confidence            77788754 344555544433333222 24789999999999994 44332222233466   789999999999754  


Q ss_pred             ---CcchhHHHHHHHHhhhHHHHcC-CCchHHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcCC
Q 000078          467 ---NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIP  542 (2405)
Q Consensus       467 ---~~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~~ll~~~p  542 (2405)
                         +-.||+.+.+.+...+-+++.| .++++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|
T Consensus       394 ~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP  473 (2005)
T COG5103         394 KFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLP  473 (2005)
T ss_pred             hhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCC
Confidence               4479999999888877777755 588999999999999999999987779999999999999999999999999999


Q ss_pred             chhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHHH
Q 000078          543 SPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVI  617 (2405)
Q Consensus       543 ~~f~idLA~lAsrre~l~lekWL~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~~l  617 (2405)
                      ..|++|+++|++.|+.++|..|+..++....+ +    |+...++||+.|+.......+.+   ..+-+  ++..|+-.+
T Consensus       474 ~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tviei  548 (2005)
T COG5103         474 PEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIEI  548 (2005)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHHH
Confidence            99999999999999999999999999987665 3    99999999999997543211111   11222  344566555


Q ss_pred             HHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCC-CCC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHHHH
Q 000078          618 LKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEA-ADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMV  691 (2405)
Q Consensus       618 l~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PRL~n~~~-~d~-----~~~~~f~~dIE~Ean~yfqkmYs~eisI~eiv  691 (2405)
                      |..+......     -.+.++.++..|++.||||++.+- +|+     .+.++++.|||+||.+|||+||+++++|+++|
T Consensus       549 l~t~~~~V~q-----~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I  623 (2005)
T COG5103         549 LGTFTKAVEQ-----YIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSI  623 (2005)
T ss_pred             HHHhHHHHHH-----HHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHH
Confidence            5554332221     156778888899999999999874 444     35678999999999999999999999999999


Q ss_pred             HHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCcc
Q 000078          692 QMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKM  771 (2405)
Q Consensus       692 ~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrkp~~SkM  771 (2405)
                      +.||+|++|++|||+|+|+|+-|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++++|++|||
T Consensus       624 ~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skm  703 (2005)
T COG5103         624 NQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKM  703 (2005)
T ss_pred             HHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCcc
Q 000078          772 FVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVS  851 (2405)
Q Consensus       772 f~FGiqAL~qF~~RL~EwPqyC~~LlqIp~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~~  851 (2405)
                      |+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-.+..    ..+.       .+                
T Consensus       704 f~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~----------------  755 (2005)
T COG5103         704 FSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV----------------  755 (2005)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc----------------
Confidence            999999999999999999999999999999965 8999998855542    1100       00                


Q ss_pred             CCcccccccchhhhHHhhhcccccccccccccccccCCCCCccccCCCCCcccCCCCCchhhhhcccCCCccccccCCCc
Q 000078          852 GSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF  931 (2405)
Q Consensus       852 ~~~~~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  931 (2405)
                                                |+       +++.+|.   ++.-                             .|
T Consensus       756 --------------------------Ek-------a~p~~pm---~pl~-----------------------------~f  770 (2005)
T COG5103         756 --------------------------EK-------ANPTHPM---LPLE-----------------------------DF  770 (2005)
T ss_pred             --------------------------cc-------cCCCCcc---cchh-----------------------------hh
Confidence                                      00       0111111   1000                             00


Q ss_pred             cCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHh
Q 000078          932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVM 1011 (2405)
Q Consensus       932 ~~p~~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nle~K~~Elke~L~e~y~~WFA~YLV~ 1011 (2405)
                      ++-       -+              +-+...|--++|+..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.
T Consensus       771 v~~-------~v--------------~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vt  829 (2005)
T COG5103         771 VRL-------IV--------------KCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVT  829 (2005)
T ss_pred             hee-------Ee--------------ccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEE
Confidence            000       00              001123445677888899999999999999999999999999999999999999


Q ss_pred             hhcccCCchhHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHhhhhhhhhhhhhcCcccccCCCC
Q 000078         1012 KRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREID 1091 (2405)
Q Consensus      1012 kRAsiEPNfH~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~id 1091 (2405)
                      +|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+....  +.+|+++|||||+|||+|||||||||+|+++|
T Consensus       830 qR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~  907 (2005)
T COG5103         830 QRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFD  907 (2005)
T ss_pred             eeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCcccccccc
Confidence            9999999999999999999999999999999999999999987644  88999999999999999999999999999999


Q ss_pred             hhHHHHH----------------HHhcccccccccCCChhHHHHHHHHHHHhcCCcccchhHHHHHHHhhhcCCCccccc
Q 000078         1092 PKSLIIE----------------ILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT 1155 (2405)
Q Consensus      1092 ~K~LLlE----------------VLe~~~~SkVFkPPNPWtm~IL~LL~ELy~~~dLKLNLKFEIEVLcK~L~ldl~die 1155 (2405)
                      ||++|+|                ||++++.|+||||||||+||||+||+|||+++++||+||||||+|+|+||++++.||
T Consensus       908 Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ik  987 (2005)
T COG5103         908 FKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIK  987 (2005)
T ss_pred             HHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCC
Confidence            9999999                999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccchhhccCCCCCCCCccCCCCCcccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccccccccCcCcchh
Q 000078         1156 PTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLME 1235 (2405)
Q Consensus      1156 Ps~~L~~r~~~~~~~~d~~~k~~~~~q~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~l~~ 1235 (2405)
                      |++.++++...-.        +.    .+.+||.      -++ .+.|.+          ..+++||.... .++. ..+
T Consensus       988 Ps~~~~n~~V~ks--------~L----Eke~~Ed------vL~-a~~~d~----------~~~~~qyi~~~-sSq~-Tvt 1036 (2005)
T COG5103         988 PSKSLGNHLVLKS--------RL----EKELPED------VLN-AKFPDG----------TDYLAQYIIED-SSQI-TVT 1036 (2005)
T ss_pred             hhhhhCcHHHHHH--------HH----hhhchHH------HHh-hhcccc----------chHHHHHHHHh-hhcc-hHH
Confidence            9999987653100        00    0011110      000 001100          01233433100 0000 001


Q ss_pred             HHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhhccc
Q 000078         1236 DEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIV 1315 (2405)
Q Consensus      1236 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~in~~l~~f~~~p~LkriV~~AidRAIrEII~PVV 1315 (2405)
                      |. ++.                                      +...|       -|.+|++.++|++.+||||++.||
T Consensus      1037 D~-va~--------------------------------------~~g~P-------~PaiK~~~Qlal~~SVrEI~~aVV 1070 (2005)
T COG5103        1037 DL-VAR--------------------------------------HVGSP-------KPAIKNLTQLALDLSVREICGAVV 1070 (2005)
T ss_pred             HH-HHH--------------------------------------HcCCC-------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 111                                      01111       289999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 000078         1316 QRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQL 1395 (2405)
Q Consensus      1316 eRSVtIA~iTT~eLV~KDFA~EpDE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~~l~~~~~~~~~~Eq~i~~ 1395 (2405)
                      |||+.||++||+.|++||||||.|+.++..||++||++|||+||+|||+|||++.|.+++|++..++.+....+-+++..
T Consensus      1071 eks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~vd~ 1150 (2005)
T COG5103        1071 EKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEKVDK 1150 (2005)
T ss_pred             HHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988877666778888999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCcCcccccccccCCCCCCCCCCCCCCHhHHHHh
Q 000078         1396 VTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVY 1474 (2405)
Q Consensus      1396 ~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~s~~~~~LPe~LrlkpgGL~~~Q~~VY 1474 (2405)
                      ++++|++.||.+||||+++|++++|+..|+.++..|||||++ ++.||+||++ +..+++||++|+++-||+||+|+++|
T Consensus      1151 ~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf~ly 1229 (2005)
T COG5103        1151 IAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQFSLY 1229 (2005)
T ss_pred             HHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHhhhh
Confidence            999999999999999999999999999999999999999997 7999999996 55578999999999999999999999


Q ss_pred             HhhhcCcCCcCCCCCCCccccCCcCCCCchhhhhcccCCCCCCCCCCCCCCCCCCcccccCCccccCCCcccCccccccc
Q 000078         1475 EDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLST 1554 (2405)
Q Consensus      1475 EdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 1554 (2405)
                      |||.|+|-..-   .+|.+.++.-+.          ...+++         ++.+   +  |.++.      +..+.-..
T Consensus      1230 E~fD~l~ls~i---~~h~~~~~~n~~----------~Td~ad---------stda---l--~~nl~------nt~e~eAn 1276 (2005)
T COG5103        1230 EDFDRLSLSTI---MGHIEKIAINAI----------DTDSAD---------STDA---L--NNNLN------NTVENEAN 1276 (2005)
T ss_pred             hcccccccccc---ccccchhhhhhh----------cCChhh---------hhhh---h--ccccc------hhhhhHHH
Confidence            99999763221   122221111000          000000         0000   0  00000      00000000


Q ss_pred             cc-ccccCCCCCcccccccccccccCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhccccccccccchhhhHHHHH
Q 000078         1555 SL-VHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYH 1633 (2405)
Q Consensus      1555 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 1633 (2405)
                      |+ +++.. .           .-. + +.+  ..+.    .        .+++.. .+..+.         .    +..|
T Consensus      1277 Qta~~yq~-n-----------~L~-i-~~q--l~Ql----~--------~~~Py~-~~~~V~---------a----D~e~ 1314 (2005)
T COG5103        1277 QTALEYQE-N-----------LLI-I-KAQ--LVQL----S--------KKIPYS-SKKNVI---------A----DEEH 1314 (2005)
T ss_pred             HHHHHHHH-H-----------hhh-h-hhH--HHHh----c--------ccCCcc-hhhcCc---------c----hhhh
Confidence            00 01100 0           000 0 000  0000    0        011110 011111         0    1111


Q ss_pred             HHHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhHHHHH
Q 000078         1634 IVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVK 1713 (2405)
Q Consensus      1634 ~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aqki~~~L~~~~~~~l~~ev~~~~L~~L~~~~~~~~k 1713 (2405)
                      -.   +.+.     . +++..++.+|...|.++   |+.++.++|.+++.|+..+.+++++||+.++||+||++|-+++|
T Consensus      1315 ~~---lkE~-----~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~kt~k 1382 (2005)
T COG5103        1315 GL---LKEG-----K-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFKTQK 1382 (2005)
T ss_pred             hH---HHhh-----H-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHHHhh
Confidence            11   1111     1 35667777777777655   99999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchhh-HhhHHHHHHH
Q 000078         1714 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISELHNLVDA 1792 (2405)
Q Consensus      1714 evt~wl~~~~d~rk~Nv~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~~-~~df~~tlea 1792 (2405)
                      +|.||++|+.|.||||+|+|.+||++||||..|||.+|++.|.+.. +.++|||+.|++.++.+|.++. ..||.+|+|.
T Consensus      1383 ~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~tLe~ 1461 (2005)
T COG5103        1383 EVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICTLEM 1461 (2005)
T ss_pred             hhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997544 4589999999998887776654 5999999998


Q ss_pred             HHHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCCCCCCCCCChHHHHHH
Q 000078         1793 LAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSM 1872 (2405)
Q Consensus      1793 L~~~~~~~~~~~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~eq~~~ 1872 (2405)
                      |+.-.    + +.++++.+++.+...                     ..+..|                ....+.||+..
T Consensus      1462 la~s~----d-~~vk~f~~~~~~tm~---------------------~~v~kg----------------nKqq~ndqi~i 1499 (2005)
T COG5103        1462 LAGSS----D-PKVKDFFQKISNTMM---------------------HIVAKG----------------NKQQLNDQIII 1499 (2005)
T ss_pred             HhccC----C-hhHHHHHHHHHHhhh---------------------hccccc----------------ccccccceEEE
Confidence            85432    2 455777766643100                     000011                12356799999


Q ss_pred             HHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccchhhhH
Q 000078         1873 LFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDI 1952 (2405)
Q Consensus      1873 lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~~iDA 1952 (2405)
                      +|.|||++.++...+|..-..|+.||+++|+++.+|+...|||+.+|.+|..|.+..            +.+.+|..|||
T Consensus      1500 Vf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~~IDa 1567 (2005)
T COG5103        1500 VFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYLKIDA 1567 (2005)
T ss_pred             eeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------Ccccceeeccc
Confidence            999999999999999999999999999999999999999999999999999997432            24799999999


Q ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHHHHHH
Q 000078         1953 YAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAF 2032 (2405)
Q Consensus      1953 ~akLi~~lvk~~~~~~~~~k~~~L~kiL~iiv~vl~~dhe~~~~~FnQRpyfRlfs~LL~el~~~d~~l~~~~~~il~~f 2032 (2405)
                      |+.||+.++++. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|+||.......++.-..+.+.|
T Consensus      1568 l~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~Sv~ 1646 (2005)
T COG5103        1568 LPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNRSVV 1646 (2005)
T ss_pred             hHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhHHHH
Confidence            999999999996 4445678899999999999999999999999999999999999999999875544445556788899


Q ss_pred             HHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHHHHHH
Q 000078         2033 ANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLL 2112 (2405)
Q Consensus      2033 a~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~ll~Fl~~~L~~~~ls~~i~~lYkGtLRilL 2112 (2405)
                      -++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||+.  ++...+...++++|+|+||+.|
T Consensus      1647 y~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gflr~iL 1724 (2005)
T COG5103        1647 YSIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFLRTIL 1724 (2005)
T ss_pred             HHHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcchheee
Confidence            99999999999999999999999999999999999999999999999999999998  7888889999999999999999


Q ss_pred             HHHhcchhHHHHHhHhhhccCCCCCcccccceecccCCCCCCCCCCCCCCCCCCCcCccCCCccccchHHHHHHhhhhHH
Q 000078         2113 VLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRAD 2192 (2405)
Q Consensus      2113 vLlHDfPEFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~lpEi~~~P~I~~d~~~~L~~~~lk~~ 2192 (2405)
                      |++||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...|  .++++.
T Consensus      1725 v~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~~~s~ 1802 (2005)
T COG5103        1725 VYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EGQNSF 1802 (2005)
T ss_pred             eeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--hhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887  478888


Q ss_pred             HHHHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhh-
Q 000078         2193 VDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL- 2268 (2405)
Q Consensus      2193 vD~yL~~r~~~~~~l~~i~~~L~~~~~~~~~~g~~---yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~- 2268 (2405)
                      +|  |  |.+.++.+..+.+++...-+.....|..   ++-..+-++|.|+|+.++....     +          .|+ 
T Consensus      1803 ~d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~-----~----------~f~~ 1863 (2005)
T COG5103        1803 FD--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMI-----E----------RFMH 1863 (2005)
T ss_pred             hh--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHH-----H----------HHhc
Confidence            88  5  5566677777777665544333233322   2456788999999999865311     1          233 


Q ss_pred             hhhHHHHHHHHHhccChhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhccCCCCc
Q 000078         2269 VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIVNRPHP 2344 (2405)
Q Consensus      2269 ~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~----~~~IqEqItRVLLERLIv~rPHP 2344 (2405)
                      +|+.+.++..++..++++.||+++.||+|||||||+||+||||++|++|.+++    +-.||||||||||||+|||||||
T Consensus      1864 ks~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~NrPH~ 1943 (2005)
T COG5103        1864 KSEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICNRPHP 1943 (2005)
T ss_pred             cccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            35589999999999999999999999999999999999999999999998763    45799999999999999999999


Q ss_pred             hHHHHHHHHHhhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000078         2345 WGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2392 (2405)
Q Consensus      2345 WGLliTfiELiKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2392 (2405)
                      |||+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus      1944 WGl~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103        1944 WGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred             chhheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence            999999999999999999999999999999999999999999776544

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		2405
4gml_A		235	Crystal Structure Of Human Not1 Mif4g Domain Length		2e-50
4gmj_A		229	Structure Of Human Not1 Mif4g Domain Co-Crystallize		2e-50
4b89_A		249	Mif4g Domain Of The Yeast Not1 Length = 249		2e-29
4b8b_A		603	N-Terminal Domain Of The Yeast Not1 Length = 603		4e-24

>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235

Back alignment and structure

Iteration: 1

Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 96/214 (44%), Positives = 142/214 (66%), Gaps = 18/214 (8%) Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029 +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIEPNFH LY FLD Sbjct: 13 IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD 72 Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089 + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +T+ +N+ + + Sbjct: 73 TLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD 132 Query: 1090 IDPKSLIIE------------------ILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPN 1131 +D KSL++E +LE S+ ++PPNPWTMAI+ +LAE++ + Sbjct: 133 LDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHD 192 Query: 1132 LKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1165 LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R Sbjct: 193 LKLNLKFEIEVLCKNLALDINELKPGNLLKDKDR 226

PyMOL of 4gml

>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229

Back alignment and structure

>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249

Back alignment and structure

>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1 Length = 603

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2405
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 90.3 bits (223), Expect = 5e-18
 Identities = 109/668 (16%), Positives = 206/668 (30%), Gaps = 220/668 (32%)

Query: 5   SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQ 64
           S    S    L  +L     + V +    F+E  +  +   L   M  +    T  + P 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFL---MSPIK---TEQRQPS 106

Query: 65  LESVVASVFKYIMDKP-NFSTVFSQ-SV----KITEINEQLLENLSDVLNLSLPERIGIG 118
           + + +   +    D+  N + VF++ +V       ++ + LLE L    N+ +   +G G
Sbjct: 107 MMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSG 162

Query: 119 ---LALS--DSENLDALMCGKNF------------CMAQIERLCANPVPMNSAEQIQNII 161
              +AL    S  +   M  K F             +  +++L     P  ++       
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------ 216

Query: 162 MFLQRSSDLSKHVDSLMQILS-LLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDD 220
                SS++   + S+   L  LL+SK +   +L  VL   + +A +    +L       
Sbjct: 217 --SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL-LNVQNAKAWNAFNL------- 264

Query: 221 DFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLT--EITLSRILGAIART 278
                                           CK IL     LT     ++  L A   T
Sbjct: 265 -------------------------------SCK-IL-----LTTRFKQVTDFLSAATTT 287

Query: 279 HAGLEDNQNTFST------FTLALGCSTMSDLP-------PLSSWNVDVLVKAIKQLAPN 325
           H  L+ +  T +           L C    DLP       P     + ++ ++I+     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRR---LSIIAESIRD-GLA 342

Query: 326 T--NWIRV------------VENLDYEGFYIPTE-----EAFSFFM-SVYKYACQEPFPL 365
           T  NW  V            +  L+      P E     +  S F  S          P 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSA-------HIPT 389

Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLC 425
             +   +W +                +V    +   +         L ++          
Sbjct: 390 ILLS-LIWFDVIKS------------DVMVVVNKLHKY-------SL-VEKQPKESTISI 428

Query: 426 LDL-LDVLCQLSEMG--HASFARSMLE-Y--PLKQCPEMLLLGMA------HINTAYNLI 473
             + L++  +L      H    RS+++ Y  P     + L+          HI   ++L 
Sbjct: 429 PSIYLELKVKLENEYALH----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLK 482

Query: 474 QYEVS--FAVFPMI----------IKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCT 521
             E      +F M+          I+   +       W+     +L      +  +P   
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTA------WNA-SGSILNTLQQLKFYKP--- 532

Query: 522 IRILEICQEL-KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEEC 580
             I +   +  ++++++L+     F  ++       +  DL   L I L    +  FEE 
Sbjct: 533 -YICDNDPKYERLVNAILD-----FLPKIEENLICSKYTDL---LRIALMAEDEAIFEEA 583

Query: 581 LKFVKEVQ 588
               K+VQ
Sbjct: 584 H---KQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2405
4b8b_A		603	General negative regulator of transcription subun;	100.0
4gmj_A		229	CCR4-NOT transcription complex subunit 1; mRNA dec	100.0
4b89_A		249	General negative regulator of transcription subun;	100.0
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	81.69

>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}	Back alignment and structure

Probab=100.00  E-value=5.3e-78  Score=750.51  Aligned_cols=480  Identities=21%  Similarity=0.338  Sum_probs=376.1

Q ss_pred             HHHHHHHhhCC-CCCHHHHHHhc-----CCCCCCCCChhhHHHHHHHHhhhcCCCccccccccCccc-CchhhHHHHHHH
Q 000078          314 VLVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYA  386 (2405)
Q Consensus       314 v~v~alk~~~p-~lnW~~Vi~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~Fpi~~l~~~~W~-N~~~Qlsfl~~~  386 (2405)
                      -+-.+++.+.. ++||.+|+..+     |. .-.-|+..++.-+++++..+    =+|+.++...|. .=.-.|.++-|-
T Consensus        89 q~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~  163 (603)
T 4b8b_A           89 VIARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHK  163 (603)
T ss_dssp             HHHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccccccCHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHcCCC----chHHHHHcCcchHhHhHHHHHHHHh
Confidence            34466777755 89999999875     33 22345667777788877642    456666655664 344455555555


Q ss_pred             hhCCCcccccCcCc-cccccccCCCCccccccccccccc---hHHHHHHHHH---hhhcCchHHHHHHhhhhhhcChhHH
Q 000078          387 VASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQANHAWL---CLDLLDVLCQ---LSEMGHASFARSMLEYPLKQCPEML  459 (2405)
Q Consensus       387 l~~p~~~f~f~~~~-~~~v~~d~~~~~~~~~~~~~~~W~---sldLie~L~~---Lae~~~~~~v~~l~~~p~~~~pe~l  459 (2405)
                      .+..-.-||+..++ -+.++- ..++.+    ...=.+.   +||+ +.+..   ++++..-....+.|+.-.+..||.+
T Consensus       164 ~~~~qg~~dl~~~~~~~~~~~-~~p~~~----~~ll~~~si~~l~l-~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peyl  237 (603)
T 4b8b_A          164 WSVQNGCFDLLNAEGTRKVSE-TIPNTK----QSLLYLLSIASLNL-ELFLQREELSDGPMLAYFQECFFEDFNYAPEYL  237 (603)
T ss_dssp             CCTTTTCCCGGGCTTCCBSCS-SSCCCS----CCGGGBHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cCccCCchhhhcCCCceeccc-CCCCcc----cceeeeeehhhhhH-HHHHHHHHhccchhHHHHHHHHhhhhccCHHHH
Confidence            54323346666666 333442 222211    0111122   3333 22222   2222123456789999999999999


Q ss_pred             HHHhhccCcch------hHHHHHHHHhhhHHHHcCCCch-HHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhh
Q 000078          460 LLGMAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELK  532 (2405)
Q Consensus       460 llgl~~i~~~~------~~l~~ell~~lf~~fl~~~~~~-~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk  532 (2405)
                      .+++..-.+.|      ..+.+|++-.||-..+...+.+ .-+.+.+. ++.-++......+++|+.+++|++|||+|+|
T Consensus       238 al~~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk  316 (603)
T 4b8b_A          238 ILALVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTG  316 (603)
T ss_dssp             HHHHHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTT
T ss_pred             HHHHHhhccccccccccchHHHHHHHHHHHHHHhcChHHHHHHHHHcc-ChhHHHHHHHHHHhcCchhHHHHHHHHHHhC
Confidence            77776544444      4566788888887766444333 23334444 4445558888889999999999999999999


Q ss_pred             hHHHHhhcCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccch
Q 000078          533 ILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYME  612 (2405)
Q Consensus       533 ~L~~ll~~~p~~f~idLA~lAsrre~l~lekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~e  612 (2405)
                      ||+.||+..||+||+|+|++|+||||+|||+|++++++.+|.+   +|++||+.|+..+.    +..  +.++..+|.++
T Consensus       317 ~L~~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~~--~~~~~~~L~i~  387 (603)
T 4b8b_A          317 RLDTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TNT--PFRSLKTFDLF  387 (603)
T ss_dssp             CHHHHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C----CSCTTTSCCHH
T ss_pred             hHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCch---HHHHHHHHHhhccc----cCC--CCCCCceecHH
Confidence            9999999999999999999999999999999999999999976   99999999997651    111  22233568889


Q ss_pred             hHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCC-CCCC-----CCCCCChhhHHHHHHHHHHHHhccCCC
Q 000078          613 KIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLT  686 (2405)
Q Consensus       613 tv~~ll~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PRL~n~~-~~d~-----~~~~~f~~dIE~Ean~yfqkmYs~eis  686 (2405)
                      |+++||++|++.   .++++.+|+++++|+.|+++||||+|++ |+|+     +.++.|++|||+|||+||||||++++|
T Consensus       388 tv~~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eis  464 (603)
T 4b8b_A          388 AFHSLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELA  464 (603)
T ss_dssp             HHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence            999999999864   4577889999999999999999999986 5554     456789999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCC
Q 000078          687 IEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKP  766 (2405)
Q Consensus       687 I~eiv~~L~r~K~S~~~rdqdvFaCMIh~LFdEYrFF~~YP~~eL~iTAvLFG~lI~~~Lv~~~~L~iALr~ILeAlrkp  766 (2405)
                      |+++|++|+|||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||+|+|
T Consensus       465 I~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp  544 (603)
T 4b8b_A          465 IKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEP  544 (603)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccchHHHHHHHHHHhhhhhhHHHHHHh-cccccccccHHHHHHHHHHHH
Q 000078          767 ADSKMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALA  818 (2405)
Q Consensus       767 ~~SkMf~FGiqAL~qF~~RL~EwPqyC~~Ll-qIp~L~~~~p~l~~~ie~~l~  818 (2405)
                      ++||||+||++||+||++||+||||||.+|+ +|||| +++|+||+.|+++..
T Consensus       545 ~~skmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~l-q~~P~l~q~i~~~a~  596 (603)
T 4b8b_A          545 PESKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPAL-KSQAQVYQSIVEAAT  596 (603)
T ss_dssp             TTSHHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGG-GGCHHHHHHHHHTTC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc-ccChHHHHHHHHHHc
Confidence            9999999999999999999999999997766 79999 588999999988765

PyMOL of 4b8b

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A	Back alignment and structure

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B	Back alignment and structure

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		2405
d1uw4b_		248	Regulator of nonsense transcripts 2, UPF2 {Human (	85.16

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Regulator of nonsense transcripts 2, UPF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=1.3  Score=49.48  Aligned_cols=117  Identities=12%  Similarity=0.161  Sum_probs=83.1

Q ss_pred             hhhhHhHhhhhhcCCcccHHHHHHHHHHHhh--hcchhHhHHHHHhhhcccCCchhHHHHHHHHHhCc--hhHHHHHHHH
Q 000078          968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQA 1043 (2405)
Q Consensus       968 e~vqDKI~FIiNNlS~~Nle~K~~Elke~L~--e~y~~WFA~YLV~kRAsiEPNfH~LYl~fLd~l~~--~~L~~~Vl~e 1043 (2405)
                      ++.--|+  |+|.||+.|++.=+++++++=-  ++-..++...++. -+..+++|=.+|..++..|..  +.+-..++..
T Consensus         5 ~~flr~l--i~n~Ls~~n~~~i~~~i~kl~~~n~e~~~~li~~i~~-~~~~~~~~i~~yA~l~a~L~~~~~~f~~~~id~   81 (248)
T d1uw4b_           5 QEYVRKL--LYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMIN-IWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDG   81 (248)
T ss_dssp             HHHHHHH--HHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHC-GGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHH--HHhhCCHhHHHHHHHHHHHCCCCCHHHHHHHHHHHhh-hhcCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3444454  6899999999998888877632  4556778886664 599999999999999999864  4455555555


Q ss_pred             HHHHHHHHhcccccccChHHHHHHHhhhhhhhhhhhhcCcccccCCCChhHHHHHHHhcccccccccCCChhHHHHHHHH
Q 000078         1044 TYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEILEPCQSSLAYQPPNPWTMAILGLL 1123 (2405)
Q Consensus      1044 Ty~~i~~LL~Se~~~~ssseRslLKNLGsWLG~iTLarNkPI~~k~id~K~LLlEVLe~~~~SkVFkPPNPWtm~IL~LL 1123 (2405)
                      +...++.-+..++                           +-                          -+-|.++.++++
T Consensus        82 l~e~f~~~~e~~~---------------------------~~--------------------------~~~r~~~~v~fi  108 (248)
T d1uw4b_          82 VLEDIRLGMEVNQ---------------------------PK--------------------------FNQRRISSAKFL  108 (248)
T ss_dssp             HHHHHHHHHHHCC---------------------------GG--------------------------GHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh---------------------------HH--------------------------HHHHHHHHHHHH
Confidence            5555544332211                           00                          124788999999


Q ss_pred             HHHhcCCcccchhHHHH
Q 000078         1124 AEIYSMPNLKMNLKFDI 1140 (2405)
Q Consensus      1124 ~ELy~~~dLKLNLKFEI 1140 (2405)
                      .|||...=+.-++-|++
T Consensus       109 geLy~~~~v~~~~i~~~  125 (248)
T d1uw4b_         109 GELYNYRMVESAVIFRT  125 (248)
T ss_dssp             HHHHHTTSSCHHHHHHH
T ss_pred             HHHHHHccCcHHHHHHH
Confidence            99999988888888875

PyMOL of d1uw4b_