Citrus Sinensis ID: 000086
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2304 | 2.2.26 [Sep-21-2011] | |||||||
| Q38970 | 2254 | Acetyl-CoA carboxylase 1 | yes | no | 0.975 | 0.996 | 0.803 | 0.0 | |
| F4I1L3 | 2355 | Acetyl-CoA carboxylase 2 | no | no | 0.979 | 0.957 | 0.780 | 0.0 | |
| Q8S6N5 | 2267 | Acetyl-CoA carboxylase 1 | yes | no | 0.977 | 0.993 | 0.736 | 0.0 | |
| B9FK36 | 2327 | Acetyl-CoA carboxylase 2 | yes | no | 0.968 | 0.958 | 0.682 | 0.0 | |
| P78820 | 2280 | Acetyl-CoA carboxylase OS | yes | no | 0.930 | 0.939 | 0.395 | 0.0 | |
| Q13085 | 2346 | Acetyl-CoA carboxylase 1 | yes | no | 0.921 | 0.904 | 0.394 | 0.0 | |
| O00763 | 2458 | Acetyl-CoA carboxylase 2 | no | no | 0.908 | 0.851 | 0.403 | 0.0 | |
| Q5SWU9 | 2345 | Acetyl-CoA carboxylase 1 | yes | no | 0.921 | 0.905 | 0.395 | 0.0 | |
| Q9TTS3 | 2346 | Acetyl-CoA carboxylase 1 | yes | no | 0.919 | 0.903 | 0.394 | 0.0 | |
| P11029 | 2324 | Acetyl-CoA carboxylase OS | yes | no | 0.923 | 0.915 | 0.395 | 0.0 |
| >sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 3833 bits (9941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1843/2294 (80%), Positives = 2038/2294 (88%), Gaps = 47/2294 (2%)
Query: 14 GRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYE 73
G NG+ + P + +S+VDEFC++L GK+PIHSILIANNGMAAVKFIRS+RTWAYE
Sbjct: 3 GSVNGNHSAVGPGINYETVSQVDEFCKALRGKRPIHSILIANNGMAAVKFIRSVRTWAYE 62
Query: 74 TFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVD 133
TFGTEKAILLV MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+TRVD
Sbjct: 63 TFGTEKAILLVGMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVD 122
Query: 134 AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193
AVWPGWGHASE PELPD L KGIIFLGPPA+SMAALGDKIGSSLIAQAA+VPTLPWSGS
Sbjct: 123 AVWPGWGHASENPELPDALDAKGIIFLGPPASSMAALGDKIGSSLIAQAADVPTLPWSGS 182
Query: 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 253
HVKIPP S LVTIP+++YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD
Sbjct: 183 HVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 242
Query: 254 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII 313
EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD++GNV+ALHSRDCSVQRRHQKII
Sbjct: 243 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRHQKII 302
Query: 314 EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHP 373
EEGPITVAP ETVKKLEQAARRLAK VNYVGAATVEYLYSM+TGEYYFLELNPRLQVEHP
Sbjct: 303 EEGPITVAPPETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHP 362
Query: 374 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAE 433
VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG+EHGG YD+WRKTSV+A PFDFD+A+
Sbjct: 363 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGIEHGGGYDSWRKTSVVAFPFDFDKAQ 422
Query: 434 STRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 493
S RPKGHCVAVRVTSEDPDDGFKPTSG+VQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF
Sbjct: 423 SIRPKGHCVAVRVTSEDPDDGFKPTSGRVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 482
Query: 494 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR+NKIHTGWLDSRI
Sbjct: 483 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRDNKIHTGWLDSRI 542
Query: 554 AMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIE 613
AMRVRAERPPWYLSVVGGALYKASA+SAA+VSDY+GYLEKGQIPPKHISLV+SQVSLNIE
Sbjct: 543 AMRVRAERPPWYLSVVGGALYKASATSAAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIE 602
Query: 614 GSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLL 673
GSKY ID+VR G G+Y LRMN+SE+ AEIHTLRDGGLLMQLDG SHV+YAEEEAAGTRLL
Sbjct: 603 GSKYTIDVVRGGSGTYRLRMNKSEVVAEIHTLRDGGLLMQLDGKSHVIYAEEEAAGTRLL 662
Query: 674 IDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG 733
IDGRTCLLQNDHDPSKL+AETPCKL+RYL+SD S+IDADTPYAEVEVMKMCMPLLSPASG
Sbjct: 663 IDGRTCLLQNDHDPSKLMAETPCKLMRYLISDNSNIDADTPYAEVEVMKMCMPLLSPASG 722
Query: 734 VLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASL 793
V+ FKM+EGQAMQAGELIA LDLDDPSAVRKAEPF+GSFP LG PTAISG+VHQRCAA+L
Sbjct: 723 VIHFKMSEGQAMQAGELIANLDLDDPSAVRKAEPFHGSFPRLGLPTAISGRVHQRCAATL 782
Query: 794 NAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKE 853
NAARMILAGYEH ++EVVQ+LLNCLDSPELP LQWQEC AVL+TRLPK+L+N LESK +E
Sbjct: 783 NAARMILAGYEHKVDEVVQDLLNCLDSPELPFLQWQECFAVLATRLPKNLRNMLESKYRE 842
Query: 854 FERIS-SSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912
FE IS +S DFPAKLL+G+LEAHL SC +KERG+ ERLIEPLMSL KSYEGGRESHAR
Sbjct: 843 FESISRNSLTTDFPAKLLKGILEAHLSSCDEKERGALERLIEPLMSLAKSYEGGRESHAR 902
Query: 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRL 972
VIV SLFEEYLSVEELF+D + ADVIER+R YKKDLLK+VDIVLSHQG+K KNKL+LRL
Sbjct: 903 VIVHSLFEEYLSVEELFNDNMLADVIERMRQLYKKDLLKIVDIVLSHQGIKNKNKLVLRL 962
Query: 973 MEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSELEMF 1032
MEQLVYPNPAAYRDKLIRFS LNHTNYSELALKASQLLEQTKLSELRS+IARSLSELEMF
Sbjct: 963 MEQLVYPNPAAYRDKLIRFSTLNHTNYSELALKASQLLEQTKLSELRSNIARSLSELEMF 1022
Query: 1033 TEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1092
TEDGE+MDTPKRKSAI+ER+EDLVSA LAVEDALVGLFDHSDHTLQRRVVETY+RRLYQP
Sbjct: 1023 TEDGENMDTPKRKSAINERIEDLVSASLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQP 1082
Query: 1093 YLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPED-QTPEQPLVEKHSERKWGAMVIIK 1150
Y+VK SVRMQWHR GL+ASWEFLEEH+ERKN G +D T E+ LVEK S+RKWGAMVIIK
Sbjct: 1083 YVVKDSVRMQWHRSGLLASWEFLEEHMERKNIGLDDPDTSEKGLVEKRSKRKWGAMVIIK 1142
Query: 1151 SLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQ 1210
SLQ P I+SAALRET H ND + G+ + GNMMHIA+VG+NNQMSLLQDSGDEDQ
Sbjct: 1143 SLQFLPSIISAALRETKH--NDYETAGAPLS---GNMMHIAIVGINNQMSLLQDSGDEDQ 1197
Query: 1211 AQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPL 1270
AQER+NKLAKILKE+EV S L SAGVGVISCIIQRDEGR PMRHSFHWS EK YY EEPL
Sbjct: 1198 AQERVNKLAKILKEEEVSSSLCSAGVGVISCIIQRDEGRTPMRHSFHWSLEKQYYVEEPL 1257
Query: 1271 LRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSN 1330
LRHLEPPLSIYLELDKLKGY NIQYT SRDRQWHLYTV DKP+PI+RMFLR+LVRQ T N
Sbjct: 1258 LRHLEPPLSIYLELDKLKGYSNIQYTPSRDRQWHLYTVTDKPVPIKRMFLRSLVRQATMN 1317
Query: 1331 DGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILR 1390
DGF+ D ++ +M+FTS+ VLRSLM AMEELELN HNA++K DHA M+LCILR
Sbjct: 1318 DGFILQQGQDKQLSQTLISMAFTSKCVLRSLMDAMEELELNAHNAAMKPDHAHMFLCILR 1377
Query: 1391 EQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAY 1450
EQ+I+DLVP+P+RV+V+A EET +E +LEE AREIH +VGVRMH+LGVCEWEV+LW+
Sbjct: 1378 EQQIDDLVPFPRRVEVNAEDEETTVEMILEEAAREIHRSVGVRMHRLGVCEWEVRLWLVS 1437
Query: 1451 SGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLG 1510
SG A GAWRVVV NVTG TC V+IYRE+E +++++YHS+ +G LH ++ QY+ LG
Sbjct: 1438 SGLACGAWRVVVANVTGRTCTVHIYREVETPGRNSLIYHSITKKGPLHETPISDQYKPLG 1497
Query: 1511 VLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQA 1570
LD++RL ARRSNTTYCYDFPL A
Sbjct: 1498 YLDRQRLAARRSNTTYCYDFPL-------------------------------------A 1520
Query: 1571 FETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAW 1629
F TALE WASQ P + +P L+ V EL F+ G+ GT L LVER PGLN+ GMVAW
Sbjct: 1521 FGTALELLWASQHPGVKKPYKDTLINVKELVFSKPEGSSGTSLDLVERPPGLNDFGMVAW 1580
Query: 1630 CMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA 1689
C++M TPEFP GR +L++ANDVTFKAGSFGPREDAFFLAVT+LACAKKLPLIYLAANSGA
Sbjct: 1581 CLDMSTPEFPMGRKLLVIANDVTFKAGSFGPREDAFFLAVTELACAKKLPLIYLAANSGA 1640
Query: 1690 RIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVD 1749
R+GVAEEVKACF++GW+DE++P+ GF Y+YL+PED+ RIGSSVIAHE+KL SGETRWV+D
Sbjct: 1641 RLGVAEEVKACFKVGWSDEISPENGFQYIYLSPEDHERIGSSVIAHEVKLSSGETRWVID 1700
Query: 1750 SIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD 1809
+IVGKEDG+GVENLTGSGAIAGAYS+AY ETFTLT+V+GRTVGIGAYLARLGMRCIQRLD
Sbjct: 1701 TIVGKEDGIGVENLTGSGAIAGAYSKAYNETFTLTFVSGRTVGIGAYLARLGMRCIQRLD 1760
Query: 1810 QPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVP 1869
QPIILTGFS LNKLLGREVYSSHMQLGGPKIM TNGVVHLTVSDDLEG+SAIL WLSY+P
Sbjct: 1761 QPIILTGFSTLNKLLGREVYSSHMQLGGPKIMGTNGVVHLTVSDDLEGVSAILNWLSYIP 1820
Query: 1870 PHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG 1929
++GG LP+++PLDPP+R VEY+PENSCDPRAAI G DN GKW+GGIFDK+SF+ETLEG
Sbjct: 1821 AYVGGPLPVLAPLDPPERIVEYVPENSCDPRAAIAGVKDNTGKWLGGIFDKNSFIETLEG 1880
Query: 1930 WARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKT 1989
WARTVVTGRA+LGGIPVG+VAVETQTVMQ+IPADPGQLDSHERVVPQAGQVWFPDSA KT
Sbjct: 1881 WARTVVTGRAKLGGIPVGVVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSAAKT 1940
Query: 1990 AQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMA 2049
AQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTY+QPVFVYIPMM
Sbjct: 1941 AQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYRQPVFVYIPMMG 2000
Query: 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLID 2109
ELRGGAWVVVDS+INSD++EMYAD TA+GNVLEPEG IEIKFRTKELLECMGRLDQKLI
Sbjct: 2001 ELRGGAWVVVDSQINSDYVEMYADETARGNVLEPEGTIEIKFRTKELLECMGRLDQKLIS 2060
Query: 2110 LMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKE 2169
L AKLQ+AK + A +E LQQQIKAREKQLLP Y Q+ATKFAELHDTS+RMAAKGVIK
Sbjct: 2061 LKAKLQDAKQSEAYANIELLQQQIKAREKQLLPVYIQIATKFAELHDTSMRMAAKGVIKS 2120
Query: 2170 VVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEG 2229
VV+W SRSFF ++L RR+AESSLVK + A+GD L +KS++ +I+ WF +S+IA+GKE
Sbjct: 2121 VVEWSGSRSFFYKKLNRRIAESSLVKNVREASGDNLAYKSSMRLIQDWFCNSDIAKGKEE 2180
Query: 2230 AWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDP 2289
AW DD+ FFTWKD+ NYE K+ EL QK+L QL IGNS SDLQALPQGLA LL+KV+P
Sbjct: 2181 AWTDDQVFFTWKDNVSNYELKLSELRAQKLLNQLAEIGNS-SDLQALPQGLANLLNKVEP 2239
Query: 2290 SCREQLIGEISKAL 2303
S RE+L+ I K L
Sbjct: 2240 SKREELVAAIRKVL 2253
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Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Required for very long chain fatty acids elongation. Necessary for embryo and plant development. Plays a central function in embryo morphogenesis, especially in apical meristem development. Involved in cell proliferation and tissue patterning. May act as a repressor of cytokinin response. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 1EC: 4 |
| >sp|F4I1L3|ACC2_ARATH Acetyl-CoA carboxylase 2 OS=Arabidopsis thaliana GN=ACC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 3751 bits (9728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1805/2312 (78%), Positives = 2021/2312 (87%), Gaps = 56/2312 (2%)
Query: 1 MSEAQRR-----SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIAN 55
+SEA+R ++ G G NG+ + VP R+ ++EV+EFC++LGGK+PIHSIL+A
Sbjct: 90 VSEAERTVVLPDGSVNGAGSVNGYHSDVVPGRN---VAEVNEFCKALGGKRPIHSILVAT 146
Query: 56 NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115
NGMAAVKFIRS+RTWAYETFG+EKA+ LVAMATPEDMRINAEHIRIADQFVEVPGGTNNN
Sbjct: 147 NGMAAVKFIRSVRTWAYETFGSEKAVKLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 206
Query: 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIG 175
NYANVQLIVEMAE+TRVDAVWPGWGHASE PELPD L KGIIFLGPPA SM ALGDKIG
Sbjct: 207 NYANVQLIVEMAEVTRVDAVWPGWGHASENPELPDALKEKGIIFLGPPADSMIALGDKIG 266
Query: 176 SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMI 235
SSLIAQAA+VPTLPWSGSHVKIPP LVT+P+++Y++ACVYTTEEAIASCQVVGYPAMI
Sbjct: 267 SSLIAQAADVPTLPWSGSHVKIPPGRSLVTVPEEIYKKACVYTTEEAIASCQVVGYPAMI 326
Query: 236 KASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNV 295
KASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE QLLCDQYGNV
Sbjct: 327 KASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEAQLLCDQYGNV 386
Query: 296 AALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355
AALHSRDCSVQRRHQKIIEEGPITVAP ET+KKLEQAARRLAK VNYVGAATVEYLYSM+
Sbjct: 387 AALHSRDCSVQRRHQKIIEEGPITVAPQETIKKLEQAARRLAKSVNYVGAATVEYLYSMD 446
Query: 356 TGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYD 415
TGEYYFLELNPRLQVEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGG YD
Sbjct: 447 TGEYYFLELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYD 506
Query: 416 AWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWA 475
+WRKTSV+A+PFDFD+AES RPKGHCVAVRVTSEDPDDGFKPTSG++QELSFKSKPN+W+
Sbjct: 507 SWRKTSVVASPFDFDEAESLRPKGHCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWS 566
Query: 476 YFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLH 535
YFSVKSGGGIHEFSDSQFGHVFAFGESR++AIANMVL LKEIQIRG+IRTNVDYTIDLLH
Sbjct: 567 YFSVKSGGGIHEFSDSQFGHVFAFGESRSVAIANMVLALKEIQIRGDIRTNVDYTIDLLH 626
Query: 536 ASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQ 595
ASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKAS +S+A+VSDY+GYLEKGQ
Sbjct: 627 ASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASTTSSAVVSDYVGYLEKGQ 686
Query: 596 IPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLD 655
IPPKHISLV+SQVSLNIEGSKY ID+VR G G+Y LRM+ SE+ AEIHTLRDGGLLMQLD
Sbjct: 687 IPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRLRMSNSEVVAEIHTLRDGGLLMQLD 746
Query: 656 GNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPY 715
G SHV+YA+EEA GTRLLIDGRTCLLQNDHDPSKL+AETPCKLLRYLVSD S ID DTPY
Sbjct: 747 GKSHVIYAKEEATGTRLLIDGRTCLLQNDHDPSKLMAETPCKLLRYLVSDNSSIDTDTPY 806
Query: 716 AEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPIL 775
AEVEVMKMCMPL+SPASGV+ FK++EGQAMQAGELIA+LDLDDPSAVRKA+PF GSFP L
Sbjct: 807 AEVEVMKMCMPLISPASGVIHFKLSEGQAMQAGELIAKLDLDDPSAVRKAKPFRGSFPRL 866
Query: 776 GPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVL 835
G PTAISGKVHQRCAA+LNAARMILAGY+H ++EV+Q+LLNCLDSPELP LQWQEC AVL
Sbjct: 867 GLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQDLLNCLDSPELPFLQWQECFAVL 926
Query: 836 STRLPKDLKNELESKCKEFERIS-SSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIE 894
+TRLPKDL+N LE K KEFE IS +S DFPAKLL+G+LEAHL SC +KERGS ERLIE
Sbjct: 927 ATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILEAHLSSCDEKERGSLERLIE 986
Query: 895 PLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVD 954
PLMSLVKSYEGGRESHAR+IV SLFEEYLSVEELF+D + ADVIER+R QYKKD LK+VD
Sbjct: 987 PLMSLVKSYEGGRESHARLIVHSLFEEYLSVEELFNDNMLADVIERMRQQYKKDRLKIVD 1046
Query: 955 IVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTK 1014
IVLSHQG+ KNKL+LRLMEQLVYPNPAAYR+KLIRFSALNHTNYS+LALKASQLLEQTK
Sbjct: 1047 IVLSHQGIIHKNKLVLRLMEQLVYPNPAAYREKLIRFSALNHTNYSQLALKASQLLEQTK 1106
Query: 1015 LSELRSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSD 1074
SELRS+IARSLSELEMFTE GE+MDTPKRKSAI E ME+LVS+ LAVEDALVGLFDHSD
Sbjct: 1107 RSELRSNIARSLSELEMFTEAGENMDTPKRKSAISETMENLVSSSLAVEDALVGLFDHSD 1166
Query: 1075 HTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPED-QTPEQ 1132
HTLQRRVVETY+ RLYQPY+VK SVRMQWH+ G+IASWEFL EH ERKN GP+D + E+
Sbjct: 1167 HTLQRRVVETYIHRLYQPYVVKESVRMQWHQSGVIASWEFL-EHFERKNTGPDDHEISEK 1225
Query: 1133 PLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL 1192
+V K S+RK G MVIIKSLQ P I++A+LRET HS + A+ GNMMHIA+
Sbjct: 1226 GIVAKSSKRKRGTMVIIKSLQFLPSIINASLRETNHSHCE-----YARAPLSGNMMHIAV 1280
Query: 1193 VGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPM 1252
VG+NNQMSLLQDSGDEDQ QER+NKLAKILKE+EV L SAGVGVISCIIQRDEGR PM
Sbjct: 1281 VGINNQMSLLQDSGDEDQTQERVNKLAKILKEEEVSLTLCSAGVGVISCIIQRDEGRTPM 1340
Query: 1253 RHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKP 1312
RHSFHW EK YY EEPLLRH+EPPLS+YLELDKLKGY NIQY+ SRDRQWH+Y+V D+P
Sbjct: 1341 RHSFHWLMEKQYYVEEPLLRHVEPPLSVYLELDKLKGYSNIQYSPSRDRQWHMYSVTDRP 1400
Query: 1313 LPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNV 1372
+PI+RMFLR+LVRQ T NDGF+ D ++ +M+FTS+ +LRSLM AMEELELN
Sbjct: 1401 VPIKRMFLRSLVRQTTMNDGFLLQQGQDYQLSQTVLSMAFTSKCILRSLMNAMEELELNA 1460
Query: 1373 HNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGV 1432
HNA++K DHA M+LCILREQ+I+DLVPYP+R +V+A EET +E +LEE +EIH +VGV
Sbjct: 1461 HNAAMKPDHAHMFLCILREQQIDDLVPYPRRFEVNAEDEETTVETILEEATQEIHRSVGV 1520
Query: 1433 RMHKLGVCEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVA 1492
RMH LGVCEWEV+LW+ SG ANGAWRVVV NVTG TC V+IYRE+E T +++++YHS+
Sbjct: 1521 RMHALGVCEWEVRLWLVSSGLANGAWRVVVANVTGRTCTVHIYREVEATGRNSLIYHSIT 1580
Query: 1493 VRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFN 1552
+G LHG +N QY+ L LD+KRL ARRSNTTYCYDFPL
Sbjct: 1581 KKGPLHGTLINGQYKPLNNLDRKRLAARRSNTTYCYDFPL-------------------- 1620
Query: 1553 LSISDCKSCSCEKCYLQAFETALEQSWASQFPNMR-PKDKALLKVTELKFADDSGTWGTP 1611
AFETALE +WASQ +R P L+ V EL F++ G+ GT
Sbjct: 1621 -----------------AFETALELNWASQHSGVRKPCKNRLINVKELVFSNTEGSLGTS 1663
Query: 1612 LVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTD 1671
L+ VER GLN+IGMVAW +EM TPEFP GR +LIVANDVTFKAGSFGPREDAFFLAVT+
Sbjct: 1664 LIPVERPAGLNDIGMVAWILEMSTPEFPMGRKLLIVANDVTFKAGSFGPREDAFFLAVTE 1723
Query: 1672 LACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSS 1731
LAC KKLPLIYLAANSGAR+GVAEEVKACF++GW+DE++P F Y+YL+ EDYARIGSS
Sbjct: 1724 LACTKKLPLIYLAANSGARLGVAEEVKACFKVGWSDEVSPGNDFQYIYLSSEDYARIGSS 1783
Query: 1732 VIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTV 1791
VIAHE+KL SGETRWV+D+IVGKEDGLGVENLTGSGAIAGAYSRAY ETFTLT+V+GR+V
Sbjct: 1784 VIAHEVKLPSGETRWVIDTIVGKEDGLGVENLTGSGAIAGAYSRAYNETFTLTFVSGRSV 1843
Query: 1792 GIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTV 1851
GIGAYLARLGMRCIQRLDQPIILTGFS LNKLLGREVYSSHMQLGGPKIM TNGVVHLTV
Sbjct: 1844 GIGAYLARLGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLGGPKIMGTNGVVHLTV 1903
Query: 1852 SDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNG 1911
SDDLEG+SAIL WLSY+P ++GG LP+++PLDPP+R VEY+PENSCDPRAAI G DN G
Sbjct: 1904 SDDLEGVSAILNWLSYIPAYVGGPLPVLAPLDPPERTVEYIPENSCDPRAAIAGINDNTG 1963
Query: 1912 KWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1971
KW+GGIFDK+SFVETLEGWARTVVTGRA+LGGIP+G+VAVETQTVM VIPADPGQLDSHE
Sbjct: 1964 KWLGGIFDKNSFVETLEGWARTVVTGRAKLGGIPIGVVAVETQTVMHVIPADPGQLDSHE 2023
Query: 1972 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIV 2031
RVVPQAGQVWFPDSA KTAQALMDFNRE+LPLFI+ANWRGFSGGQRDLFEGILQAGS IV
Sbjct: 2024 RVVPQAGQVWFPDSAAKTAQALMDFNREQLPLFIIANWRGFSGGQRDLFEGILQAGSAIV 2083
Query: 2032 ENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKF 2091
ENLRTY+QPVFVYIPMM ELRGGAWVVVDS+INSD+IEMYAD TA+GNVLEPEGMIEIKF
Sbjct: 2084 ENLRTYRQPVFVYIPMMGELRGGAWVVVDSQINSDYIEMYADETARGNVLEPEGMIEIKF 2143
Query: 2092 RTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKF 2151
R KELLECMGRLDQ LI+L A +Q+AK N+ A +E LQ+QIK REKQLLP YTQ+ATKF
Sbjct: 2144 RRKELLECMGRLDQTLINLKANIQDAKRNKAYANIELLQKQIKTREKQLLPVYTQIATKF 2203
Query: 2152 AELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAI 2211
AELHDTS+RMAAKGVIK VV+W SRSFF ++L RR+AESSLV+ + A+GD L++KSA+
Sbjct: 2204 AELHDTSMRMAAKGVIKSVVEWSGSRSFFYKKLYRRIAESSLVRNIRKASGDILSYKSAM 2263
Query: 2212 EMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTS 2271
+I+ WF SEIA+GKE AW DD+ FFTWKD+ NYE+K+ EL QK+L QL IGNS S
Sbjct: 2264 GLIQDWFRKSEIAKGKEEAWTDDQLFFTWKDNVSNYEQKLSELRTQKLLNQLAEIGNS-S 2322
Query: 2272 DLQALPQGLATLLSKVDPSCREQLIGEISKAL 2303
DLQALPQGLA LL+KVD S RE+L+ I K L
Sbjct: 2323 DLQALPQGLANLLNKVDLSRREELVDAIRKVL 2354
|
Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q8S6N5|ACC1_ORYSJ Acetyl-CoA carboxylase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 3523 bits (9134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1699/2308 (73%), Positives = 1968/2308 (85%), Gaps = 56/2308 (2%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
M G + NG +NG R P++ SEVDEFC++LGG PIHS+L+ANNGMAAVKF+RSIRT
Sbjct: 1 MEGSYQMNGILNGMSNSRHPSSPSEVDEFCKALGGDSPIHSVLVANNGMAAVKFMRSIRT 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WA ETFGTEKAILLVAMATPED++INAEHIRIADQFVEVPGGTNNNNYANVQLIVE+AE
Sbjct: 61 WALETFGTEKAILLVAMATPEDLKINAEHIRIADQFVEVPGGTNNNNYANVQLIVEIAER 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
T V AVWPGWGHASE PELPD L KGIIFLGPP+ +MAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 THVSAVWPGWGHASENPELPDALKEKGIIFLGPPSAAMAALGDKIGSSLIAQAAGVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPPESC +IP+++YR ACV TTEEA+ASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPESC-NSIPEEMYRSACVSTTEEAVASCQVVGYPAMIKASWGGGGKGIRKV 239
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD++GNVAALHSRDCSVQRRH
Sbjct: 240 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRH 299
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP ETVK+LEQAARRLAKCV+YVGAATVEYLYSMETGEYYFLELNPRLQ
Sbjct: 300 QKIIEEGPITVAPSETVKELEQAARRLAKCVHYVGAATVEYLYSMETGEYYFLELNPRLQ 359
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQV VGMG+PL+ IPEIRRFYGMEHGG YDAWRK S +AT FD
Sbjct: 360 VEHPVTEWIAEINLPAAQVVVGMGVPLYNIPEIRRFYGMEHGGGYDAWRKISAVATKFDL 419
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D A+S +PKGHCVAVRVTSEDPDDGFKPTSG+V+EL+FKSKPNVWAYFSVKSGG IHEFS
Sbjct: 420 DNAQSVKPKGHCVAVRVTSEDPDDGFKPTSGRVEELNFKSKPNVWAYFSVKSGGAIHEFS 479
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESR+LAIANMVLGLKEIQIRGEIRTNVDYT+DLL+A++YRENKIHTGWL
Sbjct: 480 DSQFGHVFAFGESRSLAIANMVLGLKEIQIRGEIRTNVDYTVDLLNAAEYRENKIHTGWL 539
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALY+AS+ S+++V+DY+GYL KGQIPPKHISLVN V+
Sbjct: 540 DSRIAMRVRAERPPWYLSVVGGALYEASSRSSSVVTDYVGYLSKGQIPPKHISLVNLTVT 599
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY I+ VRRGP SYTLRMN SEIEAEIH+LRDGGLLMQLDGNSHV+YAE EAAG
Sbjct: 600 LNIEGSKYTIETVRRGPRSYTLRMNGSEIEAEIHSLRDGGLLMQLDGNSHVIYAETEAAG 659
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLI+GRTCLLQ +HDPSKL+A+TPCKLLR+LV+DGSH+DADTPYAEVEVMKMCMPLL
Sbjct: 660 TRLLINGRTCLLQKEHDPSKLLADTPCKLLRFLVADGSHVDADTPYAEVEVMKMCMPLLL 719
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASGV+ F M EGQAMQA +LIARLDLDDPS+VR+AEPF+G+FP LGPPTA+SGKVHQ+
Sbjct: 720 PASGVIHFVMPEGQAMQAADLIARLDLDDPSSVRRAEPFHGTFPKLGPPTAVSGKVHQKF 779
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AAS+N+A MILAGYEHNI EVVQ+LLNCLDSPELP LQWQE M+VL+TRLPKDL+NEL+
Sbjct: 780 AASVNSAHMILAGYEHNINEVVQDLLNCLDSPELPFLQWQELMSVLATRLPKDLRNELDG 839
Query: 850 KCKEFERISS-SQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRE 908
K KE+E S +N DFPAKLLRG++EA+L C++K+R + ERL+EPLMSLVKSYEGGRE
Sbjct: 840 KYKEYELNSDFRKNKDFPAKLLRGIIEANLAYCSEKDRVTNERLVEPLMSLVKSYEGGRE 899
Query: 909 SHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKL 968
SHARV+V+SLFEEYLSVEELFSD IQ+DVIERLRLQ+ KDL KVV IV SHQGV+ KNKL
Sbjct: 900 SHARVVVKSLFEEYLSVEELFSDNIQSDVIERLRLQHAKDLEKVVYIVFSHQGVRTKNKL 959
Query: 969 ILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSE 1028
ILRLME LVYPNP+AYRD+LIRFS LN+T YSELALKASQLLE TKLSELR+SIARSLSE
Sbjct: 960 ILRLMEALVYPNPSAYRDQLIRFSGLNNTVYSELALKASQLLEHTKLSELRTSIARSLSE 1019
Query: 1029 LEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRR 1088
LEMFTE+GE + TP+RK AI+ERMEDLV APLAVEDALV LFDHSD TLQRRVVETY+RR
Sbjct: 1020 LEMFTEEGERVSTPRRKMAINERMEDLVGAPLAVEDALVALFDHSDPTLQRRVVETYIRR 1079
Query: 1089 LYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVI 1148
LYQPYLVKGSVRMQWHR GLIA WEF EEHI+++NG + + +Q VE E++WG MV+
Sbjct: 1080 LYQPYLVKGSVRMQWHRSGLIALWEFSEEHIKQRNGQDAMSLKQQ-VEDPEEKRWGVMVV 1138
Query: 1149 IKSLQSFPDILSAALRETAHSRNDS--ISKGSAQTASYGNMMHIALVGMNNQMSLLQDSG 1206
IKSLQ + AAL+ET+H + + +S G++ ++S+GNM+HIALVG+NNQMS LQDSG
Sbjct: 1139 IKSLQYLSSAIDAALKETSHYKAGAGNVSNGNSASSSHGNMLHIALVGINNQMSTLQDSG 1198
Query: 1207 DEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYE 1266
DEDQAQERINK++KILK+ V S L+ AGV V+SCIIQRDEGR PMRHSF WS +K YYE
Sbjct: 1199 DEDQAQERINKISKILKDSTVTSHLNGAGVRVVSCIIQRDEGRPPMRHSFQWSVDKIYYE 1258
Query: 1267 EEPLLRHLEPPLSIYLELDK--LKGYDNIQYTLSRDRQWHLYTVV----DKPLPIRRMFL 1320
E+P+LRH+EPPLS +LEL+K L GY+ ++YT SRDRQWH+YT++ D+ +R+FL
Sbjct: 1259 EDPMLRHVEPPLSTFLELNKVNLDGYNEVKYTPSRDRQWHIYTLIKNKKDQRSNDQRLFL 1318
Query: 1321 RTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSD 1380
RT+VRQP +GF+S V D RAQ + S+TS +LRSLMAA+EE+EL+ HN +V+S
Sbjct: 1319 RTIVRQPGVTNGFLSGNV-DNEVGRAQASSSYTSSSILRSLMAALEEIELHAHNETVRSS 1377
Query: 1381 HAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVC 1440
++ MYLCILR Q++ DL+P+ + +D + GQ+E LL+ +A I+ VGVRMH+L VC
Sbjct: 1378 YSHMYLCILRVQQLFDLIPFSRTID-NVGQDEATACTLLKNMALNIYEHVGVRMHRLSVC 1436
Query: 1441 EWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLHG 1499
+WEVKLW+ GQA+GAWRVVVTNVTGHTC V IYRE+ED++ H + YHSV G LHG
Sbjct: 1437 QWEVKLWLDCDGQASGAWRVVVTNVTGHTCTVDIYREVEDSNTHKLFYHSVTPSLGPLHG 1496
Query: 1500 VEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCK 1559
+ ++ Y+ L +D KR AR++ TTYCYDFPL
Sbjct: 1497 IVLDEPYKPLDAIDLKRYSARKNETTYCYDFPL--------------------------- 1529
Query: 1560 SCSCEKCYLQAFETALEQSWASQF---PNMRPKDKALLKVTELKFADDSGTWGTPLVLVE 1616
AFETAL++SW S +K+ KVTEL FAD +G+WGTPLV VE
Sbjct: 1530 ----------AFETALKRSWKSTLSVVAEANEHNKSYAKVTELMFADSTGSWGTPLVPVE 1579
Query: 1617 RSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAK 1676
RSPG+N+IG+VAW M++ TPEFPSGR I++V+NDVTFKAGSFGPREDAFF AVT+LAC +
Sbjct: 1580 RSPGINDIGIVAWIMKLSTPEFPSGREIIVVSNDVTFKAGSFGPREDAFFDAVTNLACER 1639
Query: 1677 KLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHE 1736
KLPLIYL+A +GAR+GVAEE+KACF +GW+D+ +P+RGF+Y+YLT +DY+R+ SSVIAHE
Sbjct: 1640 KLPLIYLSATAGARLGVAEEIKACFNVGWSDDESPERGFHYIYLTEQDYSRLSSSVIAHE 1699
Query: 1737 MKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY 1796
+KLESGETRWVVD+IVGKEDGLG ENL GSGAIA AYS+AYKETFTLT+VTGR VGIGAY
Sbjct: 1700 LKLESGETRWVVDTIVGKEDGLGCENLHGSGAIASAYSKAYKETFTLTFVTGRAVGIGAY 1759
Query: 1797 LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLE 1856
LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLE
Sbjct: 1760 LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLE 1819
Query: 1857 GISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGG 1916
G+SAILKWLSYVPP++GG LPI+ PLDPPDRPV Y PENSCD RAAICG D+ GKW+GG
Sbjct: 1820 GVSAILKWLSYVPPYVGGPLPIMKPLDPPDRPVTYFPENSCDARAAICGVQDSQGKWMGG 1879
Query: 1917 IFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQ 1976
+FD++SFVETLEGWA+TVVTGRA+LGGIPVG++AVETQT+MQVIPADPGQLDS ERVVPQ
Sbjct: 1880 MFDRESFVETLEGWAKTVVTGRAKLGGIPVGVIAVETQTMMQVIPADPGQLDSAERVVPQ 1939
Query: 1977 AGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRT 2036
AGQVWFPDSATKTAQAL+DFNREELPLFILANWRGFSGGQRDLFEGILQAGS IVENLRT
Sbjct: 1940 AGQVWFPDSATKTAQALLDFNREELPLFILANWRGFSGGQRDLFEGILQAGSNIVENLRT 1999
Query: 2037 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKEL 2096
Y QP FVYIPM ELRGGAWVVVDS+IN +HIEMYA+RTAKGNVLEPEG++EIKFR KEL
Sbjct: 2000 YNQPAFVYIPMGGELRGGAWVVVDSKINPEHIEMYAERTAKGNVLEPEGLVEIKFRPKEL 2059
Query: 2097 LECMGRLDQKLIDLMAKLQE-AKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELH 2155
ECM RLD +LI L +L+E K N L+ +++ ++ I AR KQL+P YTQVAT+FAELH
Sbjct: 2060 EECMLRLDPELIKLSTRLREMKKENAGLSEMDTTRRSIIARMKQLMPIYTQVATRFAELH 2119
Query: 2156 DTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIK 2215
DTS RMAAKGVI +VVDW++SRSFF RRLRRRV E +L K + AAG+ L+ KSA++ IK
Sbjct: 2120 DTSARMAAKGVIGKVVDWEESRSFFYRRLRRRVTEDALAKEIREAAGEQLSQKSALDYIK 2179
Query: 2216 QWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQA 2275
+W+L S + G W +DE FF WKDD NYE +++EL ++V L+ + S D++A
Sbjct: 2180 KWYLSSNGSDGNSEKWNNDEAFFAWKDDPTNYENQLEELKAERVSKWLSRLAES-PDVKA 2238
Query: 2276 LPQGLATLLSKVDPSCREQLIGEISKAL 2303
LP GL+ +L+K++PS REQ+I + + L
Sbjct: 2239 LPNGLSIVLNKMNPSKREQVIDGLRQLL 2266
|
Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|B9FK36|ACC2_ORYSJ Acetyl-CoA carboxylase 2 OS=Oryza sativa subsp. japonica GN=ACC2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 3237 bits (8394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1576/2308 (68%), Positives = 1870/2308 (81%), Gaps = 77/2308 (3%)
Query: 2 SEAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAV 61
SE R + G + NG IN R A++S+V EFC +LGGK PIHS+L+ANNGMAA
Sbjct: 90 SEDPRGPTVPGSYQMNGIINETHNGRH-ASVSKVVEFCTALGGKTPIHSVLVANNGMAAA 148
Query: 62 KFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQ 121
KF+RS+RTWA +TFG+EKAI L+AMATPED+RINAEHIRIADQFVEVPGGTNNNNYANVQ
Sbjct: 149 KFMRSVRTWANDTFGSEKAIQLIAMATPEDLRINAEHIRIADQFVEVPGGTNNNNYANVQ 208
Query: 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181
LIVE+AE T V AVWPGWGHASE PELPD L+ KGI+FLGPPA+SM ALGDK+GS+LIAQ
Sbjct: 209 LIVEIAERTGVSAVWPGWGHASENPELPDALTAKGIVFLGPPASSMHALGDKVGSALIAQ 268
Query: 182 AANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG 241
AA VPTL WSGSHV++P E CL +IPD++YR+ACV TTEEA+ASCQVVGYPAMIKASWGG
Sbjct: 269 AAGVPTLAWSGSHVEVPLECCLDSIPDEMYRKACVTTTEEAVASCQVVGYPAMIKASWGG 328
Query: 242 GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSR 301
GGKGIRKVHNDDEVR LFKQVQGEVPGSPIFIM++A+QSRHLEVQLLCDQYGNVAALHSR
Sbjct: 329 GGKGIRKVHNDDEVRTLFKQVQGEVPGSPIFIMRLAAQSRHLEVQLLCDQYGNVAALHSR 388
Query: 302 DCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361
DCSVQRRHQKIIEEGP+TVAP ETVK+LEQAARRLAK V YVGAATVEYLYSMETGEYYF
Sbjct: 389 DCSVQRRHQKIIEEGPVTVAPRETVKELEQAARRLAKAVGYVGAATVEYLYSMETGEYYF 448
Query: 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTS 421
LELNPRLQVEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYGM HGG YD WRKT+
Sbjct: 449 LELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMNHGGGYDLWRKTA 508
Query: 422 VIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKS 481
+ATPF+FD+ +S PKGHCVAVR+TSEDPDDGFKPT GKV+E+SFKSKPNVWAYFSVKS
Sbjct: 509 ALATPFNFDEVDSKWPKGHCVAVRITSEDPDDGFKPTGGKVKEISFKSKPNVWAYFSVKS 568
Query: 482 GGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRE 541
GGGIHEF+DSQFGHVFA+G +R+ AI M L LKE+QIRGEI +NVDYT+DLL+ASD+RE
Sbjct: 569 GGGIHEFADSQFGHVFAYGTTRSAAITTMALALKEVQIRGEIHSNVDYTVDLLNASDFRE 628
Query: 542 NKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHI 601
NKIHTGWLD+RIAMRV+AERPPWY+SVVGGALYK ++ A VSDY+GYL KGQIPPKHI
Sbjct: 629 NKIHTGWLDTRIAMRVQAERPPWYISVVGGALYKTVTANTATVSDYVGYLTKGQIPPKHI 688
Query: 602 SLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVV 661
SLV + V+LNI+G KY ID VR G GSY LRMN S ++A + L DGGLLMQLDGNSHV+
Sbjct: 689 SLVYTTVALNIDGKKYTIDTVRSGHGSYRLRMNGSTVDANVQILCDGGLLMQLDGNSHVI 748
Query: 662 YAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721
YAEEEA+GTRLLIDG+TC+LQNDHDPSKL+AETPCKLLR+LV+DG+H+DAD PYAEVEVM
Sbjct: 749 YAEEEASGTRLLIDGKTCMLQNDHDPSKLLAETPCKLLRFLVADGAHVDADVPYAEVEVM 808
Query: 722 KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAI 781
KMCMPLLSPASGV+ M+EGQAMQAG+LIARLDLDDPSAV++AEPF +FP +G P A
Sbjct: 809 KMCMPLLSPASGVIHVVMSEGQAMQAGDLIARLDLDDPSAVKRAEPFEDTFPQMGLPIAA 868
Query: 782 SGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPK 841
SG+VH+ CAASLNA RMILAGYEH+I++VV L+ CLD+PELP LQW+E M+VL+TRLP+
Sbjct: 869 SGQVHKLCAASLNACRMILAGYEHDIDKVVPELVYCLDTPELPFLQWEELMSVLATRLPR 928
Query: 842 DLKNELESKCKEFE-RISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLV 900
+LK+ELE K +E++ + S DFPA +LR ++E +L ++KE+ + ERL+EPLMSL+
Sbjct: 929 NLKSELEGKYEEYKVKFDSGIINDFPANMLRVIIEENLACGSEKEKATNERLVEPLMSLL 988
Query: 901 KSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQ 960
KSYEGGRESHA +V+SLFEEYL VEELFSD IQ+DVIERLRLQ+ KDL KVVDIVLSHQ
Sbjct: 989 KSYEGGRESHAHFVVKSLFEEYLYVEELFSDGIQSDVIERLRLQHSKDLQKVVDIVLSHQ 1048
Query: 961 GVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1020
V+ K KLIL+LME LVYPNPAAYRD+LIRFS+LNH Y +LALKAS+LLEQTKLSELR+
Sbjct: 1049 SVRNKTKLILKLMESLVYPNPAAYRDQLIRFSSLNHKAYYKLALKASELLEQTKLSELRA 1108
Query: 1021 SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRR 1080
IARSLSELEMFTE+ + + KR+ AI E MEDLV+APL VEDAL+ LFD SD T+Q+R
Sbjct: 1109 RIARSLSELEMFTEESKGLSMHKREIAIKESMEDLVTAPLPVEDALISLFDCSDTTVQQR 1168
Query: 1081 VVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSE 1140
V+ETY+ RLYQP+LVK S++M+W G+IA WEF E H + +NG +
Sbjct: 1169 VIETYIARLYQPHLVKDSIKMKWIESGVIALWEFPEGHFDARNGG----------AVLGD 1218
Query: 1141 RKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMS 1200
++WGAMVI+KSL+S + AL+ET+H T+S GNMMHIAL+G +N+M
Sbjct: 1219 KRWGAMVIVKSLESLSMAIRFALKETSH-----------YTSSEGNMMHIALLGADNKMH 1267
Query: 1201 LLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSP 1260
++Q+SGD+ +RI KL ILK+ + LH++GV IS I+QRDE R MR +F WS
Sbjct: 1268 IIQESGDD---ADRIAKLPLILKDNV--TDLHASGVKTISFIVQRDEARMTMRRTFLWSD 1322
Query: 1261 EKFYYEEEPLLRHLEPPLSIYLELDKL--KGYDNIQYTLSRDRQWHLYTV--VDKPLPIR 1316
EK YEEEP+LRH+EPPLS LELDKL KGY+ ++YT SRDRQWH+YT+ + P +
Sbjct: 1323 EKLSYEEEPILRHVEPPLSALLELDKLKVKGYNEMKYTPSRDRQWHIYTLRNTENPKMLH 1382
Query: 1317 RMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNAS 1376
R+F RTLVRQP+ ++ F S + DM A+ +SFTS +LRSLM A+EELEL+ +
Sbjct: 1383 RVFFRTLVRQPSVSNKFSSGQIGDMEVGSAEEPLSFTSTSILRSLMTAIEELELH----A 1438
Query: 1377 VKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHK 1436
+++ H+ MYL +L+EQK+ DLVP +D GQ+E +LL+E+A +IH VG RMH
Sbjct: 1439 IRTGHSHMYLHVLKEQKLLDLVPVSGNTVLDVGQDEATAYSLLKEMAMKIHELVGARMHH 1498
Query: 1437 LGVCEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYH-SVAVRG 1495
L VC+WEVKL + G A+G WR+V TNVT HTC V IYRE+ED +VYH + G
Sbjct: 1499 LSVCQWEVKLKLDCDGPASGTWRIVTTNVTSHTCTVDIYREMEDKESRKLVYHPATPAAG 1558
Query: 1496 LLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSI 1555
LHGV +N YQ L V+D KR AR + TTYCYDFPL A +R S + +
Sbjct: 1559 PLHGVALNNPYQPLSVIDLKRCSARNNRTTYCYDFPLAFETA-----VRK---SWSSSTS 1610
Query: 1556 SDCKSCSCEKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLV 1615
K +CY++A TEL FAD G+WGTPLV +
Sbjct: 1611 GASKGVENAQCYVKA--------------------------TELVFADKHGSWGTPLVQM 1644
Query: 1616 ERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACA 1675
+R GLN+IGMVAW ++M TPEFPSGR I++VAND+TF+AGSFGPREDAFF AVT+LAC
Sbjct: 1645 DRPAGLNDIGMVAWTLKMSTPEFPSGREIIVVANDITFRAGSFGPREDAFFEAVTNLACE 1704
Query: 1676 KKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAH 1735
KKLPLIYLAANSGARIG+A+EVK+CF +GW+D+ +P+RGF Y+YL+ EDYARIG+SVIAH
Sbjct: 1705 KKLPLIYLAANSGARIGIADEVKSCFRVGWSDDGSPERGFQYIYLSEEDYARIGTSVIAH 1764
Query: 1736 EMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGA 1795
+M+L+SGE RWV+DS+VGKEDGLGVEN+ GS AIA AYSRAYKETFTLT+VTGRTVGIGA
Sbjct: 1765 KMQLDSGEIRWVIDSVVGKEDGLGVENIHGSAAIASAYSRAYKETFTLTFVTGRTVGIGA 1824
Query: 1796 YLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDL 1855
YLARLG+RCIQRLDQPIILTG+SALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDL
Sbjct: 1825 YLARLGIRCIQRLDQPIILTGYSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDL 1884
Query: 1856 EGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIG 1915
EG+S IL+WLSYVP +IGG LP+ +PLDPPDRPV Y+PENSCDPRAAI G D+ GKW+G
Sbjct: 1885 EGVSNILRWLSYVPAYIGGPLPVTTPLDPPDRPVAYIPENSCDPRAAIRGVDDSQGKWLG 1944
Query: 1916 GIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVP 1975
G+FDKDSFVET EGWA+TVVTGRA+LGGIPVG++AVETQT+MQ IPADPGQLDS E+ VP
Sbjct: 1945 GMFDKDSFVETFEGWAKTVVTGRAKLGGIPVGVIAVETQTMMQTIPADPGQLDSREQSVP 2004
Query: 1976 QAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLR 2035
+AGQVWFPDSATKTAQAL+DFNRE LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLR
Sbjct: 2005 RAGQVWFPDSATKTAQALLDFNREGLPLFILANWRGFSGGQRDLFEGILQAGSTIVENLR 2064
Query: 2036 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKE 2095
TY QP FVYIPM AELRGGAWVVVDS+IN D IE YA+RTAKGNVLEP+G+IEIKFR++E
Sbjct: 2065 TYNQPAFVYIPMAAELRGGAWVVVDSKINPDRIECYAERTAKGNVLEPQGLIEIKFRSEE 2124
Query: 2096 LLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELH 2155
L +CM RLD LIDL AKL+ A N + A +SLQ+ I+AR KQL+P YTQ+A +FAELH
Sbjct: 2125 LQDCMSRLDPTLIDLKAKLEVANKNGS-ADTKSLQENIEARTKQLMPLYTQIAIRFAELH 2183
Query: 2156 DTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIK 2215
DTSLRMAAKGVIK+VVDW++SRSFF +RLRRR++E L K + A AG+ +H+ AIE+IK
Sbjct: 2184 DTSLRMAAKGVIKKVVDWEESRSFFYKRLRRRISEDVLAKEIRAVAGEQFSHQPAIELIK 2243
Query: 2216 QWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQA 2275
+W+ S A W DD+ F W D+ NY+ +Q L Q+V L+++ +S+SDLQA
Sbjct: 2244 KWYSASHAAE-----WDDDDAFVAWMDNPENYKDYIQYLKAQRVSQSLSSLSDSSSDLQA 2298
Query: 2276 LPQGLATLLSKVDPSCREQLIGEISKAL 2303
LPQGL+ LL K+DPS R QL+ EI K L
Sbjct: 2299 LPQGLSMLLDKMDPSRRAQLVEEIRKVL 2326
|
Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|P78820|ACAC_SCHPO Acetyl-CoA carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1607 bits (4160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/2359 (39%), Positives = 1360/2359 (57%), Gaps = 216/2359 (9%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
++PA +V ++ S GG I SILIANNG+AAVK IRSIR WAYETF E+AI M
Sbjct: 50 KAPAG--KVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKFTVM 107
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
ATP+D+++NA++IR+ADQ+VEVPGG+NNNNYANV+LIV++AE V AVW GWGHASE P
Sbjct: 108 ATPDDLKVNADYIRMADQYVEVPGGSNNNNYANVELIVDIAERMNVHAVWAGWGHASENP 167
Query: 147 ELPDTLS--TKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS---HVKIPPES 201
+LP+ LS +K I+F+GPP ++M +LGDKI S+++AQ+A VP + WSG+ V+I E+
Sbjct: 168 KLPEMLSASSKKIVFIGPPGSAMRSLGDKISSTIVAQSARVPCMSWSGNELDQVRIDEET 227
Query: 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261
+VT+ DDVY++AC+ + EE IA + +GYP MIKAS GGGGKGIR+V + ++ F+Q
Sbjct: 228 NIVTVDDDVYQKACIRSAEEGIAVAEKIGYPVMIKASEGGGGKGIRQVTSTEKFAQAFQQ 287
Query: 262 VQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVA 321
V E+PGSP+F+MK+A Q+RHLEVQ+L DQYGN +L RDCSVQRRHQKIIEE P+T+A
Sbjct: 288 VLDELPGSPVFVMKLAGQARHLEVQILADQYGNNISLFGRDCSVQRRHQKIIEEAPVTIA 347
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEI 381
P T ++E+AA RL + V Y A T+EYLY E +YFLELNPRLQVEHP TE ++ +
Sbjct: 348 PAATFHEMERAAVRLGELVGYASAGTIEYLYEPENDRFYFLELNPRLQVEHPTTEMVSGV 407
Query: 382 NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441
NLPAAQ+ V MG+PL +IP IR YG+ G + P F + PKGHC
Sbjct: 408 NLPAAQLQVAMGLPLSRIPHIRELYGLPRDGDSEI---DFFFQNPESFKVQKVPTPKGHC 464
Query: 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501
VA R+TSEDP +GFKP+SG +++L+F+S NVW YFSV + GGIHEF+DSQFGH+F+F E
Sbjct: 465 VACRITSEDPGEGFKPSSGMIKDLNFRSSSNVWGYFSVGTAGGIHEFADSQFGHIFSFAE 524
Query: 502 SRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER 561
SR + +MV+ LKE+ IRG+ RT V+Y + LL ++ EN+ TGWLD IA +V + R
Sbjct: 525 SRESSRKSMVVALKELSIRGDFRTTVEYLVRLLETKEFSENEFTTGWLDRLIAQKVTSAR 584
Query: 562 PPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDM 621
P L+VV GAL +A A++ + YLE+GQ+P + + + ++YR
Sbjct: 585 PDKMLAVVCGALVRAHATADTQYRAFKSYLERGQVPSREFLKNVYDIEFIYDNTRYRFTA 644
Query: 622 VRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLL 681
R PGSY L +N S A + +L DGGLL+ L+G+S+ VY +E GTR+ ID +C+L
Sbjct: 645 SRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTGTRISIDNLSCML 704
Query: 682 QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAE 741
+ ++DP++L +P KL+R+LV G HI A YAEVEVMKM MPL++ GV+Q
Sbjct: 705 EQENDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQP 764
Query: 742 GQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILA 801
G ++ AG+++ L LDDPS V A PF G P G P K QR A L IL
Sbjct: 765 GASLDAGDILGILTLDDPSRVTHALPFDGQLPNWGEPQIAGNKPCQRYHALLCILLDILK 824
Query: 802 GYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISS 859
GY++ I + L + ELP +W + L R+ L S ++ +
Sbjct: 825 GYDNQIILNSTYNEFVEVLRNHELPYSEWSAHYSALVNRISPVLDKLFVSIIEK----AR 880
Query: 860 SQNVDFPAKLLRGVLEAHLLSCADKERGSQERL---IEPLMSLVKSYEGGRESHARVIVQ 916
S+ +FPAK L ++ + C + + ++L I PL+ ++ Y+ G + H +++
Sbjct: 881 SRKAEFPAKQLEVAIQTY---CDGQNLATTQQLKVQIAPLLKIISDYKDGLKVHEYNVIK 937
Query: 917 SLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLME 974
L EEY +VE+LFS ++ + DVI RLR + K D+ KV+ + LSH + KN L++ +++
Sbjct: 938 GLLEEYYNVEKLFSGINKREEDVILRLRDENKDDVDKVIALALSHSRIGSKNNLLITILD 997
Query: 975 QLVYPNPAA-----YRDKLIRFSALNHTNYSELALKASQLL---EQTKLSE--------L 1018
L+ P+ + D L + + L+ S+++LKA +LL L+E L
Sbjct: 998 -LMKSEPSTFVSLYFNDILRKLTDLDSRVTSKVSLKARELLITCAMPSLNERFSQMEHIL 1056
Query: 1019 RSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQ 1078
+SS+ S F+ S+D +++L+ + V D L F H+D +
Sbjct: 1057 KSSVVESHYGDAKFSHRTPSLDI----------LKELIDSKYTVFDVLPAFFCHTDPWVS 1106
Query: 1079 RRVVETYVRRLYQPYLVKGSVRMQWHR---CGLIASWEFLEEH--------IERKNGPED 1127
+E YVRR Y+ Y V + + +H + +W F + H NG
Sbjct: 1107 LAALEVYVRRAYRAYSV---LEINYHTEAGTPYVLTWRF-QLHSSGAPGLGANSTNGSNF 1162
Query: 1128 QTPEQPLVEKHSER-------------------KWGAMVIIKSLQSFPDILSAALRETAH 1168
P E + R ++G M+ ++ + L+ A+
Sbjct: 1163 PASTTPSYENSNRRLQSVSDLSWYVNKTDSEPFRFGTMIAAETFDELENNLALAIDRLPL 1222
Query: 1169 SRN---------DSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQERINKLA 1219
SRN + S + T N++++AL +GD D + ++KL
Sbjct: 1223 SRNYFNAGLTLDGNSSSANDNTQELTNVVNVALTS----------TGDLDDSA-IVSKLN 1271
Query: 1220 KILKEQEVGSGLHSAGVGVISCIIQR-DEGRAPMRHSFHWSPEK-----FYYEEEPLLRH 1273
+IL + L V ++ + R ++ P +++ S E+ +Y E+ +RH
Sbjct: 1272 QIL--SDFRDDLLEHNVRRVTIVGGRINKSAYPSYYTYRVSAEQKDGNLVHYNEDERIRH 1329
Query: 1274 LEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPI-RRMFLRTLVRQPTSNDG 1332
+EP L+ LEL +L + NI+ + + H+Y K + +R F R LVR D
Sbjct: 1330 IEPALAFQLELGRLSNF-NIEPVFTDNHNIHVYRATAKNMDTDKRFFTRALVRPGRLRDE 1388
Query: 1333 FMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILREQ 1392
+ A++ +S T R ++ ++ A+E + H Q L +
Sbjct: 1389 IPT----------AEYLISETHR-LINDILDALEVI-----------GHEQTDLNHI--- 1423
Query: 1393 KINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAYSG 1452
+ + + Q E A+ LE R R+ +L V E+++ +
Sbjct: 1424 ----FINFTPAFGLAPKQVEAALGGFLERFGR--------RLWRLRVTAAEIRI-ICTDP 1470
Query: 1453 QANGAW--RVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLG 1510
N + RV+++NV+G V IY E++ T ++ ++ S+ G +H ++ Y +
Sbjct: 1471 STNTLFPLRVIISNVSGFVVNVEIYAEVK-TENNSWIFKSIGQPGSMHLRPISTPYPTKE 1529
Query: 1511 VLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQA 1570
L +R A+ TT+ YDFP +
Sbjct: 1530 WLQPRRYKAQLMGTTFVYDFP-------------------------------------EL 1552
Query: 1571 FETALEQSWASQFPNMRPKDKALLKVTELK--FADDSGTWGTPLVLVERSPGLNNIGMVA 1628
F A SW + PN R K + E K AD+ G L V R PG N+ GMVA
Sbjct: 1553 FRRAFTDSW-KKVPNGRSKVTIPQNMFECKELVADEHGV----LQEVNREPGTNSCGMVA 1607
Query: 1629 WCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSG 1688
WC+ + TPE+P+GR I++VAND+TF+ GSFGP+ED +F VT LA + +P IYLAANSG
Sbjct: 1608 WCITVKTPEYPNGRKIIVVANDITFQIGSFGPQEDEYFYKVTQLARQRGIPRIYLAANSG 1667
Query: 1689 ARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSS----VIAHEMKLESGET 1744
ARIGVA+E+ F I W D +P++GF+Y+YLTPE Y R+ + E+ E+GE
Sbjct: 1668 ARIGVADEIVPLFNIAWVDPDSPEKGFDYIYLTPEAYERLQKENPNILTTEEVVTETGEL 1727
Query: 1745 RWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRC 1804
R + +I+G +GLGVE L GSG IAG SRAY + FT T VT R VGIGAYL RLG R
Sbjct: 1728 RHKITTIIGSSEGLGVECLRGSGLIAGVTSRAYNDIFTCTLVTCRAVGIGAYLVRLGQRA 1787
Query: 1805 IQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKW 1864
+Q QPIILTG ALNK+LGREVY+S++QLGG ++M NG+ HLT DD +GIS I+ W
Sbjct: 1788 VQIEGQPIILTGAPALNKVLGREVYTSNLQLGGTQVMHRNGISHLTSQDDFDGISKIVNW 1847
Query: 1865 LSYVPPHIGGALPIISPLDPPDRPVEYLP-ENSCDPRAAICGFLDNNGKWIGGIFDKDSF 1923
+SY+P +PI D DR VE+ P +N DPR I G D + ++ G+FDK SF
Sbjct: 1848 ISYIPDKRNNPVPISPSSDTWDRDVEFYPSQNGYDPRWLIAGKEDEDS-FLYGLFDKGSF 1906
Query: 1924 VETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFP 1983
ETL GWA+TVV GRAR+GGIP G++AVET+T+ +PADP DS E+V+ +AGQVW+P
Sbjct: 1907 QETLNGWAKTVVVGRARMGGIPTGVIAVETRTIENTVPADPANPDSTEQVLMEAGQVWYP 1966
Query: 1984 DSATKTAQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVF 2042
+SA KTAQA+ DFN E+LPLFILANWRGFSGGQRD+F +L+ GS IV+ L +YKQPVF
Sbjct: 1967 NSAFKTAQAINDFNHGEQLPLFILANWRGFSGGQRDMFNEVLKYGSYIVDALASYKQPVF 2026
Query: 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGR 2102
VYIP +ELRGG+WVVVD IN D +EMYAD ++ VLEPEGM+ IKFR ++LL M R
Sbjct: 2027 VYIPPFSELRGGSWVVVDPTINEDQMEMYADEESRAGVLEPEGMVSIKFRREKLLSLMRR 2086
Query: 2103 LDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMA 2162
D K L +L+ +++ + + +++ ++ RE++L+P Y Q++ FA+LHD RM
Sbjct: 2087 CDHKYASLCNELK--RDDLSADDLSTIKVKLMEREQKLMPIYQQISIHFADLHDRVGRMV 2144
Query: 2163 AKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSE 2222
AK V+++ + W ++R FF RLRRR+ E ++ +T LT + + E +++W+ E
Sbjct: 2145 AKKVVRKPLKWTEARRFFYWRLRRRLNEHYALQKITQLIPS-LTIRESREYLQKWY---E 2200
Query: 2223 IARGKEGAWLDDETFFTW-KDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLA 2281
GK+ D++ W ++ + + K+ QEL +L+ + SD + + LA
Sbjct: 2201 EWCGKQDWDESDKSVVCWIEEHNDDLSKRTQELKSTYYSERLSKL--LRSDRKGMIDSLA 2258
Query: 2282 TLLSKVDPSCREQLIGEIS 2300
+L+++D + +++L G+++
Sbjct: 2259 QVLTELDENEKKELAGKLA 2277
|
Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q13085|ACACA_HUMAN Acetyl-CoA carboxylase 1 OS=Homo sapiens GN=ACACA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1596 bits (4132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 925/2344 (39%), Positives = 1346/2344 (57%), Gaps = 221/2344 (9%)
Query: 7 RSAMAGL-----GRGNGHINGA--VPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
RS+M+GL GR I+ + SPA EF GG K I +LIANNG+A
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPA------EFVTRFGGNKVIEKVLIANNGIA 129
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 130 AVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 189
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LI+++A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++
Sbjct: 190 VELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIV 249
Query: 180 AQAANVPTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAM 234
AQ A +PTLPWSGS +++ + ++ +P ++Y + V ++ + + + VGYP M
Sbjct: 250 AQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVM 309
Query: 235 IKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGN 294
IKAS GGGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN
Sbjct: 310 IKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGN 369
Query: 295 VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354
+L RDCSVQRRHQKIIEE P T+A + +EQ A +LAK V YV A TVEYLYS
Sbjct: 370 AISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQ 429
Query: 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVY 414
+ G +YFLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G
Sbjct: 430 D-GSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG-- 486
Query: 415 DAWRKTSVIATPFDF-DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473
+P DF D A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NV
Sbjct: 487 ---------DSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNV 537
Query: 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDL 533
W YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I L
Sbjct: 538 WGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKL 597
Query: 534 LHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEK 593
L ++ N+I TGWLD IA +V+AERP L VV GAL+ A S VS+++ LE+
Sbjct: 598 LETESFQMNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSVSNFLHSLER 657
Query: 594 GQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ 653
GQ+ P H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+
Sbjct: 658 GQVLPAHTLLNTVDVELIYEGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLS 717
Query: 654 LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADT 713
DG+S+ Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A
Sbjct: 718 YDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQ 777
Query: 714 PYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFP 773
YAE+EVMKM M L + SG + + G A+ G ++A++ LD+PS V++AE GS P
Sbjct: 778 CYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVLAKMQLDNPSKVQQAELHTGSLP 837
Query: 774 ILGPPTAISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPL 825
+ TA+ G K+H+ L+ ++ GY +++ V+ L+ L P LPL
Sbjct: 838 RIQ-STALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTLRDPSLPL 896
Query: 826 LQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK- 884
L+ Q+ M +S R+P +++ ++ + ++ +S FP++ + +L++H + K
Sbjct: 897 LELQDIMTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKS 956
Query: 885 ERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQ 944
ER + ++ LV+ Y G H + +V L +YL VE F + + LR +
Sbjct: 957 EREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREE 1016
Query: 945 YKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPA---AYRDKLIRFSALNHTNYSE 1001
K D+ V++ + SH V +KN L+ L++QL +P + L + L+ T ++
Sbjct: 1017 NKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLTDELLNILTELTQLSKTTNAK 1076
Query: 1002 LALKASQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVS 1057
+AL+A Q+L + L ELR + S LS ++M+ E ++ L+
Sbjct: 1077 VALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCIENLQKLIL 1125
Query: 1058 APLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL-- 1115
+ ++ D L F HS+ ++ +E YVRR Y Y + Q + ++F+
Sbjct: 1126 SETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLP 1185
Query: 1116 EEHIERKNGPE--------------------------DQTPEQPLVEKHSERKWGAMVII 1149
H R N P D + P ++ G MV
Sbjct: 1186 TSHPNRGNIPTLNRMSFSSNLNHYGMTHVASVSDVLLDNSFTPPC------QRMGGMVSF 1239
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL-----VGMNNQMSLLQD 1204
++ + F I + S Q+ ++ H +L V + + +L
Sbjct: 1240 RTFEDFVRIFDEVM--------GCFSDSPPQSPTFPEAGHTSLYDEDKVPRDEPIHILNV 1291
Query: 1205 SGDEDQAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHS----FHW 1258
+ D E ++LA + +E Q+ + L G+ ++ ++ + + R + + FH
Sbjct: 1292 AIKTDCDIED-DRLAAMFREFTQQNKATLVDHGIRRLTFLVAQKDFRKQVNYEVDRRFHR 1350
Query: 1259 SPEKFY-------YEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLY----- 1306
KF+ +EE+ + RHLEP L+ LEL++++ +D + + + HLY
Sbjct: 1351 EFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFD-LTAIPCANHKMHLYLGAAK 1409
Query: 1307 TVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366
V + R F+R ++R SD+ T A + + R L+ AM+
Sbjct: 1410 VEVGTEVTDYRFFVRAIIRH------------SDLVTKEA--SFEYLQNEGERLLLEAMD 1455
Query: 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREI 1426
ELE+ +N +V++D ++L + VP V +D + +EE R +
Sbjct: 1456 ELEVAFNNTNVRTDCNHIFL---------NFVP---TVIMDPSK--------IEESVRSM 1495
Query: 1427 HATVGVRMHKLGVCEWEVKLWMAYSGQANG-AWRVVVTNVTGHTCAVYIYRELEDTSKHT 1485
G R+ KL V + E+K+ + + R+ +TN +G+ + +Y+E+ D+
Sbjct: 1496 VMRYGSRLWKLRVLQAELKINIRLTPTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQ 1555
Query: 1486 VVYHSVAVR-GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIR 1544
+++ + + G LHG+ +N Y + +L KR A+ TTY YD P
Sbjct: 1556 IMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIP------------- 1602
Query: 1545 SFFFSSFNLSISDCKSCSCEKCYLQAFETALEQSWASQ----FPNMRPKDKALLKVTELK 1600
+ F +L + W S F P +L TEL
Sbjct: 1603 ------------------------EMFRQSLIKLWESMSTQAFLPSPPLPSDMLTYTELV 1638
Query: 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGP 1660
DD G LV + R PG N IGMVAW M +PE+P GR I+++ ND+T++ GSFGP
Sbjct: 1639 L-DDQGQ----LVHMNRLPGGNEIGMVAWKMTFKSPEYPEGRDIIVIGNDITYRIGSFGP 1693
Query: 1661 REDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYL 1720
+ED FL ++LA A+ +P IY++ANSGARIG+AEE++ F + W D +P +G+ Y+YL
Sbjct: 1694 QEDLLFLRASELARAEGIPRIYVSANSGARIGLAEEIRHMFHVAWVDPEDPYKGYRYLYL 1753
Query: 1721 TPEDYARIGSSVIAH-EMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKE 1779
TP+DY R+ + H E + GE+R+ + I+GKE+G+G ENL GSG IAG S AY E
Sbjct: 1754 TPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGIGPENLRGSGMIAGESSLAYNE 1813
Query: 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPK 1839
T++ VT R +GIGAYL RLG R IQ + +ILTG ALNK+LGREVY+S+ QLGG +
Sbjct: 1814 IITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKVLGREVYTSNNQLGGIQ 1873
Query: 1840 IMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS-CD 1898
IM NGV H TV DD EG+ +L WLSY+P + ++P+++ DP DR +E++P + D
Sbjct: 1874 IMHNNGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSVPLLNSKDPIDRIIEFVPTKTPYD 1933
Query: 1899 PRAAICG--FLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTV 1956
PR + G G+W+ G FD SF E ++ WA+TVV GRARLGGIPVG+VAVET+TV
Sbjct: 1934 PRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQTVVVGRARLGGIPVGVVAVETRTV 1993
Query: 1957 MQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 2016
IPADP LDS +++ QAGQVWFPDSA KT QA+ DFNRE LPL + ANWRGFSGG
Sbjct: 1994 ELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAIKDFNREGLPLMVFANWRGFSGGM 2053
Query: 2017 RDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTA 2076
+D+++ +L+ G+ IV+ LR QPV VYIP AELRGG+WVV+DS IN H+EMYADR +
Sbjct: 2054 KDMYDQVLKFGAYIVDGLRECCQPVLVYIPPQAELRGGSWVVIDSSINPRHMEMYADRES 2113
Query: 2077 KGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR 2136
+G+VLEPEG +EIKFR K+L++ M R+D I L +L + A + L+ ++K R
Sbjct: 2114 RGSVLEPEGTVEIKFRRKDLVKTMRRVDPVYIHLAERL--GTPELSTAERKELENKLKER 2171
Query: 2137 EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKT 2196
E+ L+P Y QVA +FA+LHDT RM KGVI +++DW SR+FF RLRR + E LVK
Sbjct: 2172 EEFLIPIYHQVAVQFADLHDTPGRMQEKGVISDILDWKTSRTFFYWRLRRLLLE-DLVKK 2230
Query: 2197 LTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGV 2256
A LT M+++WF++ E K W +++ W + ++ +E GV
Sbjct: 2231 KIHNANPELTDGQIQAMLRRWFVEVE-GTVKAYVWDNNKDLAEWLE-----KQLTEEDGV 2284
Query: 2257 QKVL 2260
V+
Sbjct: 2285 HSVI 2288
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|O00763|ACACB_HUMAN Acetyl-CoA carboxylase 2 OS=Homo sapiens GN=ACACB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1592 bits (4123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/2307 (40%), Positives = 1333/2307 (57%), Gaps = 213/2307 (9%)
Query: 7 RSAMAGL---GRGNGH----INGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
R +M+GL RG H ++ + SPA EF GG + I +LIANNG+A
Sbjct: 218 RPSMSGLHLVKRGREHKKLDLHRDFTVASPA------EFVTRFGGDRVIEKVLIANNGIA 271
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR WAYE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 272 AVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 331
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LIV++A+ V AVW GWGHASE P+LP+ L G+ FLGPP+ +M ALGDKI S+++
Sbjct: 332 VELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVV 391
Query: 180 AQAANVPTLPWSGSHVKIP------PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPA 233
AQ VPTLPWSGS + + + +++P+DVY + CV +E + + + +G+P
Sbjct: 392 AQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPL 451
Query: 234 MIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYG 293
MIKAS GGGGKGIRK + ++ LF+QVQ E+PGSPIF+MK+A +RHLEVQ+L DQYG
Sbjct: 452 MIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYG 511
Query: 294 NVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353
N +L RDCS+QRRHQKI+EE P T+APL + +EQ A RLAK V YV A TVEYLYS
Sbjct: 512 NAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS 571
Query: 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGV 413
+ G ++FLELNPRLQVEHP TE IA++NLPAAQ+ + MG+PL ++ +IR YG GV
Sbjct: 572 QD-GSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGV 630
Query: 414 YDAWRKTSVIATPFDFDQAESTRP--KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKP 471
TP F + S P +GH +A R+TSE+PD+GFKP+SG VQEL+F+S
Sbjct: 631 -----------TPISF-ETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSK 678
Query: 472 NVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTI 531
NVW YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I
Sbjct: 679 NVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLI 738
Query: 532 DLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYL 591
+LL ++ N I TGWLD IA +V+AE+P L VV GAL A A ++D++ L
Sbjct: 739 NLLETESFQNNDIDTGWLDYLIAEKVQAEKPDIMLGVVCGALNVADAMFRTCMTDFLHSL 798
Query: 592 EKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLL 651
E+GQ+ P L V L G KY + + R+ + L MN IE + H L DGGLL
Sbjct: 799 ERGQVLPADSLLNLVDVELIYGGVKYILKVARQSLTMFVLIMNGCHIEIDAHRLNDGGLL 858
Query: 652 MQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDA 711
+ +GNS+ Y +EE R+ I +TC+ + ++DP+ L + + KL +Y V DG H++A
Sbjct: 859 LSYNGNSYTTYMKEEVDSYRITIGNKTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEA 918
Query: 712 DTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771
+ YAE+EVMKM M L G +++ G ++AG ++ARL+LDDPS V AEPF G
Sbjct: 919 GSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLELDDPSKVHPAEPFTGE 978
Query: 772 FPILGPPTAISGKVHQRCAASLNAARMILAG-------YEHNIEEVVQNLLNCLDSPELP 824
P + K+HQ + L +++G + ++E VQ L+ L P LP
Sbjct: 979 LPAQQTLPILGEKLHQVFHSVLENLTNVMSGFCLPEPVFSIKLKEWVQKLMMTLRHPSLP 1038
Query: 825 LLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK 884
LL+ QE M ++ R+P ++ + ++ +S FP++ + +L+ H A
Sbjct: 1039 LLELQEIMTSVAGRIPAPVEKSVRRVMAQYASNITSVLCQFPSQQIATILDCH---AATL 1095
Query: 885 ERGSQERLI----EPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIER 940
+R + + + ++ LV+ Y G + + +V L YL VE F +
Sbjct: 1096 QRKADREVFFINTQSIVQLVQRYRSGIRGYMKTVVLDLLRRYLRVEHHFQQAHYDKCVIN 1155
Query: 941 LRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLI----RFSALNH 996
LR Q+K D+ +V+D + SH V +KN+L++ L+++L P+P + D+LI + L+
Sbjct: 1156 LREQFKPDMSQVLDCIFSHAQVAKKNQLVIMLIDELCGPDP-SLSDELISILNELTQLSK 1214
Query: 997 TNYSELALKASQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERM 1052
+ + ++AL+A Q+L + L ELR + S LS ++M+ E +
Sbjct: 1215 SEHCKVALRARQILIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCPENL 1263
Query: 1053 EDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASW 1112
+ L+ + + D L F H++ + +E YVRR Y Y + Q + +
Sbjct: 1264 KKLILSETTIFDVLPTFFYHANKVVCMASLEVYVRRGYIAYELNSLQHRQLPDGTCVVEF 1323
Query: 1113 EFL--EEHIERKNGPEDQTPEQPLVEKHSE------------RKWGAMVIIKSLQSFPDI 1158
+F+ H R P T P + +HS ++ GAMV + + F
Sbjct: 1324 QFMLPSSHPNRMTVPISIT--NPDLLRHSTELFMDSGFSPLCQRMGAMVAFRRFEDFTRN 1381
Query: 1159 LSAALRETAHSRNDSISKGSAQTASYG---------NMMHIALVGMNNQMSLLQDSGDED 1209
+ A+ D+ A+T+ Y +HI V + L ED
Sbjct: 1382 FDEVISCFANVPKDTPLFSEARTSLYSEDDCKSLREEPIHILNVSIQCADHL------ED 1435
Query: 1210 QAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEE 1267
+A L IL+ Q + L G+ I+ +I + E P +F E + E
Sbjct: 1436 EA------LVPILRTFVQSKKNILVDYGLRRITFLIAQ-EKEFPKFFTFRARDE---FAE 1485
Query: 1268 EPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK-----PLPIRRMFLRT 1322
+ + RHLEP L+ LEL++++ +D + + + HLY K + R F+R
Sbjct: 1486 DRIYRHLEPALAFQLELNRMRNFD-LTAVPCANHKMHLYLGAAKVKEGVEVTDHRFFIRA 1544
Query: 1323 LVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHA 1382
++R SD+ T A + + R L+ AM+ELE+ +N SV++D
Sbjct: 1545 IIRH------------SDLITKEA--SFEYLQNEGERLLLEAMDELEVAFNNTSVRTDCN 1590
Query: 1383 QMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEW 1442
++L + VP V +D + +EE R + G R+ KL V +
Sbjct: 1591 HIFL---------NFVP---TVIMDPFK--------IEESVRYMVMRYGSRLWKLRVLQA 1630
Query: 1443 EVKLWMAYSGQANGA-WRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLHGV 1500
EVK+ + + + R+ +TN +G+ + +Y+E+ D+ +++HS + G HG+
Sbjct: 1631 EVKINIRQTTTGSAVPIRLFITNESGYYLDISLYKEVTDSRSGNIMFHSFGNKQGPQHGM 1690
Query: 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKS 1560
+N Y + +L KR A+ TTY YDFP
Sbjct: 1691 LINTPYVTKDLLQAKRFQAQTLGTTYIYDFP----------------------------- 1721
Query: 1561 CSCEKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPG 1620
+ F AL + W S P+ PKD +L TEL D G LV + R PG
Sbjct: 1722 --------EMFRQALFKLWGS--PDKYPKD--ILTYTELVL-DSQGQ----LVEMNRLPG 1764
Query: 1621 LNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPL 1680
N +GMVA+ M T E+P GR ++++ ND+TF+ GSFGP ED +L +++A A+ +P
Sbjct: 1765 GNEVGMVAFKMRFKTQEYPEGRDVIVIGNDITFRIGSFGPGEDLLYLRASEMARAEGIPK 1824
Query: 1681 IYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKL- 1739
IY+AANSGARIG+AEE+K F + W D +P +GF Y+YLTP+DY RI S H +
Sbjct: 1825 IYVAANSGARIGMAEEIKHMFHVAWVDPEDPHKGFKYLYLTPQDYTRISSLNSVHCKHIE 1884
Query: 1740 ESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR 1799
E GE+R+++ I+GK+DGLGVENL GSG IAG S AY+E T++ VT R +GIGAYL R
Sbjct: 1885 EGGESRYMITDIIGKDDGLGVENLRGSGMIAGESSLAYEEIVTISLVTCRAIGIGAYLVR 1944
Query: 1800 LGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS 1859
LG R IQ + IILTG SALNK+LGREVY+S+ QLGG +IM NGV H+TV DD EG+
Sbjct: 1945 LGQRVIQVENSHIILTGASALNKVLGREVYTSNNQLGGVQIMHYNGVSHITVPDDFEGVY 2004
Query: 1860 AILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS-CDPRAAICG--FLDNNGKWIGG 1916
IL+WLSY+P +PII+P DP DR +E+LP + DPR + G G W G
Sbjct: 2005 TILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSG 2064
Query: 1917 IFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQ 1976
FD SF E + WA+TVVTGRARLGGIPVG++AVET+TV +PADP LDS +++ Q
Sbjct: 2065 FFDHGSFKEIMAPWAQTVVTGRARLGGIPVGVIAVETRTVEVAVPADPANLDSEAKIIQQ 2124
Query: 1977 AGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRT 2036
AGQVWFPDSA KTAQA+ DFNRE+LPL I ANWRGFSGG +D+++ +L+ G+ IV+ LR
Sbjct: 2125 AGQVWFPDSAYKTAQAVKDFNREKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQ 2184
Query: 2037 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKEL 2096
YKQP+ +YIP AELRGG+WVV+D+ IN IEMYAD+ ++G VLEPEG +EIKFR K+L
Sbjct: 2185 YKQPILIYIPPYAELRGGSWVVIDATINPLCIEMYADKESRGGVLEPEGTVEIKFRKKDL 2244
Query: 2097 LECMGRLDQKLIDLMAKLQE---AKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAE 2153
++ M R+D LM +L E + +R + L+ ++KARE LLP Y QVA +FA+
Sbjct: 2245 IKSMRRIDPAYKKLMEQLGEPDLSDKDR-----KDLEGRLKAREDLLLPIYHQVAVQFAD 2299
Query: 2154 LHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEM 2213
HDT RM KGVI ++++W +R+F RLRR + E + + + A+G+ L+H M
Sbjct: 2300 FHDTPGRMLEKGVISDILEWKTARTFLYWRLRRLLLEDQVKQEILQASGE-LSHVHIQSM 2358
Query: 2214 IKQWFLDSEIARGKEGAWLDDETFFTW 2240
+++WF+++E A K W +++ W
Sbjct: 2359 LRRWFVETEGAV-KAYLWDNNQVVVQW 2384
|
ACC-beta may be involved in the provision of malonyl-CoA or in the regulation of fatty acid oxidation, rather than fatty acid biosynthesis. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q5SWU9|ACACA_MOUSE Acetyl-CoA carboxylase 1 OS=Mus musculus GN=Acaca PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1590 bits (4117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/2344 (39%), Positives = 1345/2344 (57%), Gaps = 221/2344 (9%)
Query: 7 RSAMAGL-----GRGNGHINGA--VPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
RS+M+GL GR I+ + SPA EF GG K I +LIANNG+A
Sbjct: 75 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPA------EFVTRFGGNKVIEKVLIANNGIA 128
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 129 AVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 188
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LI+++A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++
Sbjct: 189 VELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIV 248
Query: 180 AQAANVPTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAM 234
AQ A +PTLPWSGS +++ + ++ +P D+Y + V ++ + + + VGYP M
Sbjct: 249 AQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVM 308
Query: 235 IKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGN 294
IKAS GGGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN
Sbjct: 309 IKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGN 368
Query: 295 VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354
+L RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS
Sbjct: 369 AISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQ 428
Query: 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVY 414
+ G +YFLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G
Sbjct: 429 D-GSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWG-- 485
Query: 415 DAWRKTSVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473
DA P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NV
Sbjct: 486 DA---------PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNV 536
Query: 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDL 533
W YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I L
Sbjct: 537 WGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKL 596
Query: 534 LHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEK 593
L ++ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+
Sbjct: 597 LETESFQLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLER 656
Query: 594 GQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ 653
GQ+ P H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+
Sbjct: 657 GQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLS 716
Query: 654 LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADT 713
DG+S+ Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A
Sbjct: 717 YDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQ 776
Query: 714 PYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFP 773
YAE+EVMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P
Sbjct: 777 CYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLP 836
Query: 774 ILGPPTAISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPL 825
+ TA+ G K+H+ L+ ++ GY +++ V+ L+ L P LPL
Sbjct: 837 QI-QSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPL 895
Query: 826 LQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK- 884
L+ Q+ M +S R+P +++ ++ + ++ +S FP++ + +L++H + K
Sbjct: 896 LELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKS 955
Query: 885 ERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQ 944
ER + ++ LV+ Y G H + +V L +YL VE F + + LR +
Sbjct: 956 EREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREE 1015
Query: 945 YKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPA---AYRDKLIRFSALNHTNYSE 1001
K D+ V++ + SH V +KN L+ L++QL +P + L + L+ T ++
Sbjct: 1016 NKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLTDELLNILTELTQLSKTTNAK 1075
Query: 1002 LALKASQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVS 1057
+AL+A Q+L + L ELR + S LS ++M+ E ++ L+
Sbjct: 1076 VALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCIENLQKLIL 1124
Query: 1058 APLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL-- 1115
+ ++ D L F HS+ ++ +E YVRR Y Y + Q + ++F+
Sbjct: 1125 SETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLP 1184
Query: 1116 EEHIERKNGPE--------------------------DQTPEQPLVEKHSERKWGAMVII 1149
H R N P D P ++ G MV
Sbjct: 1185 TSHPNRGNIPTLNRMSFASNLNHYGMTHVASVSDVLLDNAFTPPC------QRMGGMVSF 1238
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL-----VGMNNQMSLLQD 1204
++ + F I + Q+ ++ H +L V + + +L
Sbjct: 1239 RTFEDFVRIFDEIM--------GCFCDSPPQSPTFPESGHTSLYDEDKVPRDEPIHILNV 1290
Query: 1205 SGDEDQAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMR----HSFHW 1258
+ D E ++LA + +E Q+ + L G+ ++ ++ + + R + FH
Sbjct: 1291 AIKTDGDIED-DRLAAMFREFTQQNKATLVEHGIRRLTFLVAQKDFRKQVNCEVDQRFHR 1349
Query: 1259 SPEKFY-------YEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLY----- 1306
KF+ +EE+ + RHLEP L+ LEL++++ +D + + + HLY
Sbjct: 1350 EFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFD-LTAIPCANHKMHLYLGAAK 1408
Query: 1307 TVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366
V + R F+R ++R SD+ T A + + R L+ AM+
Sbjct: 1409 VEVGTEVTDYRFFVRAIIRH------------SDLVTKEA--SFEYLQNEGERLLLEAMD 1454
Query: 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREI 1426
ELE+ +N +V++D ++L + VP V +D + +EE R +
Sbjct: 1455 ELEVAFNNTNVRTDCNHIFL---------NFVP---TVIMDPSK--------IEESVRSM 1494
Query: 1427 HATVGVRMHKLGVCEWEVKLWMAYSGQANG-AWRVVVTNVTGHTCAVYIYRELEDTSKHT 1485
G R+ KL V + E+K+ + + R+ +TN +G+ + +Y+E+ D+
Sbjct: 1495 VMRYGSRLWKLRVLQAELKINIRLTTTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQ 1554
Query: 1486 VVYHSVAVR-GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIR 1544
+++ + + G LHG+ +N Y + +L KR A+ TTY YD P
Sbjct: 1555 IMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIP------------- 1601
Query: 1545 SFFFSSFNLSISDCKSCSCEKCYLQAFETALEQSWASQ----FPNMRPKDKALLKVTELK 1600
+ F +L + W S F P +L TEL
Sbjct: 1602 ------------------------EMFRQSLIKLWESMSTQAFLPSPPLPSDILTYTELV 1637
Query: 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGP 1660
DD G LV + R PG N IGMVAW M + +PE+P GR I+++ ND+T++ GSFGP
Sbjct: 1638 L-DDQGQ----LVHMNRLPGGNEIGMVAWKMSLKSPEYPDGRDIIVIGNDITYRIGSFGP 1692
Query: 1661 REDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYL 1720
+ED FL ++LA A+ +P IY+AANSGARIG+AEE++ F + W D +P +G+ Y+YL
Sbjct: 1693 QEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEIRHMFHVAWVDPEDPYKGYKYLYL 1752
Query: 1721 TPEDYARIGSSVIAH-EMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKE 1779
TP+DY R+ + H E + GE+R+ + I+GKE+GLG ENL GSG IAG S AY E
Sbjct: 1753 TPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGLGAENLRGSGMIAGESSLAYDE 1812
Query: 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPK 1839
T++ VT R +GIGAYL RLG R IQ + +ILTG ALNK+LGREVY+S+ QLGG +
Sbjct: 1813 VITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKVLGREVYTSNNQLGGIQ 1872
Query: 1840 IMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS-CD 1898
IM NGV H TV DD EG+ +L WLSY+P + ++P+++ DP DR +E++P + D
Sbjct: 1873 IMHNNGVTHSTVCDDFEGVFTVLHWLSYMPKSVHSSVPLLNSKDPIDRIIEFVPTKAPYD 1932
Query: 1899 PRAAICG--FLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTV 1956
PR + G G+W+ G FD SF E ++ WA+TVV GRARLGGIPVG+VAVET+TV
Sbjct: 1933 PRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQTVVVGRARLGGIPVGVVAVETRTV 1992
Query: 1957 MQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 2016
IPADP LDS +++ QAGQVWFPDSA KT QA+ DFNRE LPL + ANWRGFSGG
Sbjct: 1993 ELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAIKDFNREGLPLMVFANWRGFSGGM 2052
Query: 2017 RDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTA 2076
+D+++ +L+ G+ IV+ LR QPV VYIP AELRGG+WVV+D IN H+EMYADR +
Sbjct: 2053 KDMYDQVLKFGAYIVDGLRECSQPVMVYIPPQAELRGGSWVVIDPTINPRHMEMYADRES 2112
Query: 2077 KGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR 2136
+G+VLEPEG +EIKFR K+L++ M R+D I L +L + + T + L+ ++K R
Sbjct: 2113 RGSVLEPEGTVEIKFRKKDLVKTMRRVDPVYIRLAERLGTPELSPTER--KELESKLKER 2170
Query: 2137 EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKT 2196
E+ L+P Y QVA +FA+LHDT RM KGVI +++DW SR+FF RLRR + E LVK
Sbjct: 2171 EEFLIPIYHQVAVQFADLHDTPGRMQEKGVINDILDWKTSRTFFYWRLRRLLLE-DLVKK 2229
Query: 2197 LTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGV 2256
A LT M+++WF++ E K W +++ W + ++ +E GV
Sbjct: 2230 KIHNANPELTDGQIQAMLRRWFVEVE-GTVKAYVWDNNKDLVEWLE-----KQLTEEDGV 2283
Query: 2257 QKVL 2260
+ V+
Sbjct: 2284 RSVI 2287
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q9TTS3|ACACA_BOVIN Acetyl-CoA carboxylase 1 OS=Bos taurus GN=ACACA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1581 bits (4093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 927/2348 (39%), Positives = 1338/2348 (56%), Gaps = 229/2348 (9%)
Query: 7 RSAMAGL-----GRGNGHINGA--VPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
RS+M+GL GR I+ + SPA EF GG K I +LIANNG+A
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPA------EFVTRFGGNKVIEKVLIANNGIA 129
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 130 AVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 189
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LI+++A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++
Sbjct: 190 VELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIV 249
Query: 180 AQAANVPTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAM 234
AQ A +PTLPWSGS + + ++ +P ++Y + V ++ + + + VGYP M
Sbjct: 250 AQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVM 309
Query: 235 IKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGN 294
IKAS GGGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN
Sbjct: 310 IKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGN 369
Query: 295 VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354
+L RDCSVQRRHQKIIEE P +A + +EQ A +LA+ V YV A TVEYLYS
Sbjct: 370 AISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYSQ 429
Query: 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVY 414
+ G +YFLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G
Sbjct: 430 D-GSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG-- 486
Query: 415 DAWRKTSVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473
DA P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NV
Sbjct: 487 DA---------PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNV 537
Query: 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDL 533
W YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I L
Sbjct: 538 WGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKL 597
Query: 534 LHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEK 593
L ++ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+
Sbjct: 598 LETESFQLNRIGTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLER 657
Query: 594 GQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ 653
GQ+ H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+
Sbjct: 658 GQVLTAHTLLNTVDVELIYEGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLS 717
Query: 654 LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADT 713
D +S+ Y +EE R+ I +TC+ + ++DPS L + + KL++Y+V DG H+ A
Sbjct: 718 YDVSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVLRSPSAGKLIQYIVEDGGHVFAGQ 777
Query: 714 PYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFP 773
YAE+EVMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P
Sbjct: 778 CYAEIEVMKMVMTLTAAESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLP 837
Query: 774 ILGPPTAISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPL 825
+ TA+ G K+H+ L+ ++ GY +++ V+ L+ L P LPL
Sbjct: 838 RI-QSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPL 896
Query: 826 LQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK- 884
L+ Q+ M +S R+P +++ ++ + ++ +S FP++ + +L++H + K
Sbjct: 897 LELQDIMTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKS 956
Query: 885 ERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQ 944
ER + ++ LV+ Y G H + +V L +YL VE F + + LR +
Sbjct: 957 EREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREE 1016
Query: 945 YKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPA---AYRDKLIRFSALNHTNYSE 1001
K D+ V++ + SH V RKN L+ L++QL P + L + L+ T ++
Sbjct: 1017 NKSDMNTVLNYIFSHAQVTRKNLLVTMLIDQLCGRGPTLTDELLNILTELTQLSKTTNAK 1076
Query: 1002 LALKASQLLEQTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAID--------ERME 1053
+AL+A Q+L IA L E+ ES+ SAID E ++
Sbjct: 1077 VALRARQVL-----------IASHLPSYELRLNQVESIFL----SAIDMYGHQFCIENLQ 1121
Query: 1054 DLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWE 1113
L+ + ++ D L F HS+ ++ +E YVRR Y Y + Q + ++
Sbjct: 1122 KLILSETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQ 1181
Query: 1114 FL--EEHIERKNGPE--------------------------DQTPEQPLVEKHSERKWGA 1145
F+ H R N P D P ++ G
Sbjct: 1182 FMLPTSHPNRGNIPTLNRMSFSSNLNHYGMTHVASVSDVLLDNAFTPPC------QRMGG 1235
Query: 1146 MVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL-----VGMNNQMS 1200
MV ++ + F I + Q+ ++ H +L V + +
Sbjct: 1236 MVSFRTFEDFVRIFDEVM--------GCFCDSPPQSPTFPEAGHTSLYDEDKVPRDEPIH 1287
Query: 1201 LLQDSGDEDQAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHS--- 1255
+L + D E + LA + +E Q+ + L G+ ++ ++ + + R + +
Sbjct: 1288 ILNVAIKTDCDIED-DSLAAMFREFTQQNKATLVEHGIRRLTFLVAQKDFRKQVNYEVDQ 1346
Query: 1256 -FHWSPEKFY-------YEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLY- 1306
FH KF+ +EE+ + RHLEP L+ LEL++++ +D + + + HLY
Sbjct: 1347 RFHREFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFD-LTAIPCANHKMHLYL 1405
Query: 1307 ----TVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLM 1362
V + R F+R ++R SD+ T A + + R L+
Sbjct: 1406 GAAKVEVGTEVTDYRFFVRAIIRH------------SDLVTKEA--SFEYLQNEGERLLL 1451
Query: 1363 AAMEELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEEL 1422
AM+ELE+ +N +V++D ++L + VP V +D + +EE
Sbjct: 1452 EAMDELEVAFNNTNVRTDCNHIFL---------NFVP---TVIMDPSK--------IEES 1491
Query: 1423 AREIHATVGVRMHKLGVCEWEVKLWMAYSGQANG-AWRVVVTNVTGHTCAVYIYRELEDT 1481
R + G R+ KL V + E+K+ + + R+ +TN +G+ + +Y+E+ D+
Sbjct: 1492 VRSMVMRYGSRLWKLRVLQAELKINIRLTPTGKAIPIRLFLTNESGYYLDISLYKEVTDS 1551
Query: 1482 SKHTVVYHSVAVR-GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTC 1540
+++ + + G LHG+ +N Y + L KR A+ TTY YD P
Sbjct: 1552 RTAQIMFQAYGDKQGPLHGMLINTPYVTKDQLQSKRFQAQSLGTTYIYDIP--------- 1602
Query: 1541 CNIRSFFFSSFNLSISDCKSCSCEKCYLQAFETALEQSWASQ----FPNMRPKDKALLKV 1596
+ F +L + W S F P +L
Sbjct: 1603 ----------------------------EMFRQSLIKLWESMSSQAFLPPPPLPSDILTY 1634
Query: 1597 TELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAG 1656
TEL DD G LV + R PG N IGMVAW M + +PE+P GR I+++ ND+T++ G
Sbjct: 1635 TELVL-DDQGQ----LVHMNRLPGGNEIGMVAWKMTLKSPEYPDGRDIIVIGNDITYRIG 1689
Query: 1657 SFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFN 1716
SFGP+ED FL ++LA A+ +P IY+AANSGARIG+AEE++ F + W D +P +G+
Sbjct: 1690 SFGPQEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEIRHMFHVAWVDPEDPYKGYK 1749
Query: 1717 YVYLTPEDYARIGSSVIAH-EMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSR 1775
Y+YLTP+DY R+ + H E + GE+R+ + I+GKE+GLG ENL GSG IAG S
Sbjct: 1750 YLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGLGAENLRGSGMIAGESSL 1809
Query: 1776 AYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQL 1835
AY E T++ VT R +GIGAYL RLG R IQ + +ILTG ALNK+LGREVY+S+ QL
Sbjct: 1810 AYDEIITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKVLGREVYTSNNQL 1869
Query: 1836 GGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPEN 1895
GG +IM NGV H TV DD EG+ +L WLSY+P + ++P+++ DP DR +E++P
Sbjct: 1870 GGIQIMHNNGVTHSTVCDDFEGVFTVLHWLSYMPKSVYSSVPLLNSKDPIDRVIEFVPTK 1929
Query: 1896 S-CDPRAAICG--FLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVE 1952
+ DPR + G G+W+ G FD SF E ++ WA+TVV GRARLGGIPVG+VAVE
Sbjct: 1930 APYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQTVVVGRARLGGIPVGVVAVE 1989
Query: 1953 TQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF 2012
T+TV IPADP LDS +++ QAGQVWFPDSA KT QA+ DFNRE LPL + ANWRGF
Sbjct: 1990 TRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAIKDFNREGLPLMVFANWRGF 2049
Query: 2013 SGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYA 2072
SGG +D+++ +L+ G+ IV+ LR QPV VYIP AELRGG+WVV+D IN H+EMYA
Sbjct: 2050 SGGMKDMYDQVLKFGAYIVDGLRECSQPVMVYIPPQAELRGGSWVVIDPTINPRHMEMYA 2109
Query: 2073 DRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQ 2132
DR ++G+VLEPEG +EIKFR K+L++ M R+D I L +L ++A + L+ +
Sbjct: 2110 DRESRGSVLEPEGTVEIKFRRKDLVKTMRRVDPVYIHLAERL--GTPELSVAERKELESK 2167
Query: 2133 IKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESS 2192
+K RE+ LLP Y QVA +FA+LHDT RM KGVI +++DW SR+FF RLRR + E
Sbjct: 2168 LKEREEFLLPIYHQVAVQFADLHDTPGRMQEKGVINDILDWKTSRTFFYWRLRRLLLE-D 2226
Query: 2193 LVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQ 2252
LVK A LT M+++WF++ E K W +++ W + ++ +
Sbjct: 2227 LVKKKIHNANPELTDGQIQAMLRRWFVEVE-GTVKAYVWDNNKDLVEWLE-----KQLTE 2280
Query: 2253 ELGVQKVL 2260
E GV+ V+
Sbjct: 2281 EDGVRSVI 2288
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|P11029|ACAC_CHICK Acetyl-CoA carboxylase OS=Gallus gallus GN=ACAC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1580 bits (4092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/2317 (39%), Positives = 1337/2317 (57%), Gaps = 190/2317 (8%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
R +M+GL G V ++ ++ EF GG + I +LIANNG+AAVK +R
Sbjct: 76 RPSMSGLHLVKQGRDRKKVDVQRDFTVASPAEFVTRFGGNRVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 136 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLHKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIP-----PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPW+GS +++ + ++ +P ++Y + V ++ + + + VGYP MIKAS G
Sbjct: 256 PTLPWNGSGLRVDWQENDLQKRILNVPQELYEKGYVKDADDGLRAAEEVGYPVMIKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P ++A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPASIATSVVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL +I +IR YG+ W
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLHRIKDIRVMYGVS------PWGDG 488
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
S+ DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 SI-----DFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
++N+I TGWLD IA +V+AERP L VV GAL+ A S VS+++ LE+GQ+ P
Sbjct: 604 QQNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSFRNSVSNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 664 HTLLNTVDVELIYEGRKYVLKVTRQSPNSYVVIMNSSCVEVDVHRLSDGGLLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS L + + KL++Y+V DG H+ A +AE+E
Sbjct: 724 TTYMKEEVDRYRITIGNKTCVFEKENDPSILRSPSAGKLIQYVVEDGGHVFAGQCFAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G + G +IA+L LDDPS V++AE G+ P + T
Sbjct: 784 VMKMVMTLTAGESGCIHYVKRPGAVLDPGCVIAKLQLDDPSRVQQAELHTGTLPQI-QST 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY ++ V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRIFHYVLDNLVNVMNGYCLPEPYFSSKVKGWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + LR + K D+
Sbjct: 963 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLKVETQFQHGHYDKCVFALREENKSDMN 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIR----FSALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+LI + L+ T +++AL+A
Sbjct: 1023 AVLNYIFSHAQVTKKNLLVTMLIDQLCGRDP-TLTDELINILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCIENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1190
Query: 1121 RKNGPED---------QTPEQPLVEKHSE---RKWGAMVIIKSLQSFPDILSAALRETAH 1168
R + + + L++ ++ G MV ++ + F I +
Sbjct: 1191 RMSFSSNLNHYGMVHVASVSDVLLDNSFTPPCQRMGGMVSFRTFEDFVRIFDEVMSCFCD 1250
Query: 1169 SRNDSISKGSAQTASYGNM--------MHIALVGMNNQMSLLQDSGDEDQAQERINKLAK 1220
S S + A AS + +HI V ++ GD D + LA
Sbjct: 1251 SPPQSPTFPEAGHASLYDEDKAAREEPIHILNVA-------IKTDGDVDD-----DGLAA 1298
Query: 1221 ILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPL 1278
+ +E Q S L G+ ++ ++ + P +F + +KF EE+ + RHLEP L
Sbjct: 1299 MFREFTQSKKSVLIEHGIRRLTFLVAQKR-EFPKFFTFR-ARDKF--EEDRIYRHLEPAL 1354
Query: 1279 SIYLELDKLKGYDNIQYTLSRDRQWHLY-----TVVDKPLPIRRMFLRTLVRQPTSNDGF 1333
+ LEL++++ +D + + + HLY V + R F+R ++R
Sbjct: 1355 AFQLELNRMRNFD-LTAIPCANHKMHLYLGAAKVEVGTEVTDYRFFVRAIIRH------- 1406
Query: 1334 MSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILREQK 1393
SD+ T A + + R L+ AM+ELE+ +N +V++D ++L
Sbjct: 1407 -----SDLVTKEA--SFEYLQNEGERLLLEAMDELEVAFNNTNVRTDCNHIFL------- 1452
Query: 1394 INDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAYSGQ 1453
+ VP V +D + +EE R + G R+ KL V + E+K+ + +
Sbjct: 1453 --NFVP---TVIMDPSK--------IEESVRSMVMRYGSRLWKLRVLQAELKINIRLTPT 1499
Query: 1454 ANG-AWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLHGVEVNAQYQSLGV 1511
R+ +TN +G+ + +Y+E+ D+ +++ + + G LHG+ +N Y + +
Sbjct: 1500 GKAIPIRLFLTNESGYYLDISLYKEVTDSRTGQIMFQAYGDKQGPLHGMLINTPYVTKDL 1559
Query: 1512 LDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAF 1571
L KR A+ T+Y YD P + F
Sbjct: 1560 LQSKRFQAQSLGTSYVYDIP-------------------------------------EMF 1582
Query: 1572 ETALEQSWASQ----FPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMV 1627
+L + W S F P +L TEL DD G LV + R PG N IGMV
Sbjct: 1583 RQSLIKLWDSMNEHAFLPTPPLPSDILTYTELVL-DDQGQ----LVHMNRLPGGNEIGMV 1637
Query: 1628 AWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANS 1687
AW M + TPE+P GR I+++ ND+T++ GSFGP+ED FL ++LA +P IY+AANS
Sbjct: 1638 AWKMTLKTPEYPEGRDIIVIGNDITYRIGSFGPQEDVLFLRASELARTHGIPRIYVAANS 1697
Query: 1688 GARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAH-EMKLESGETRW 1746
GARIG+AEE++ F + W D +P +G+ Y+YLTP+DY ++ + H E ++GE+R+
Sbjct: 1698 GARIGLAEEIRHMFHVAWEDPDDPYKGYKYLYLTPQDYKKVSALNSVHCEHVEDNGESRY 1757
Query: 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQ 1806
+ I+GKEDGLG+ENL GSG IAG S AY+ T+ VT R +GIGAYL RLG R IQ
Sbjct: 1758 KITDIIGKEDGLGIENLRGSGMIAGESSLAYESIITINLVTCRAIGIGAYLVRLGQRTIQ 1817
Query: 1807 RLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLS 1866
+ IILTG ALNK+LGREVY+S+ QLGG +IM NGV H TV DD EG+ IL WLS
Sbjct: 1818 VENSHIILTGCGALNKVLGREVYTSNNQLGGIQIMHNNGVTHGTVCDDFEGVYTILLWLS 1877
Query: 1867 YVPPHIGGALPIISPLDPPDRPVEYLPENS-CDPRAAICGFLD--NNGKWIGGIFDKDSF 1923
Y+P + +PI+ DP DR ++++P + DPR + G + G+W G FD SF
Sbjct: 1878 YMPKSVYSPVPILKVKDPIDRTIDFVPTKTPYDPRWMLAGRPNPSQKGQWQSGFFDNGSF 1937
Query: 1924 VETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFP 1983
+E ++ WA+TVV GRARLGGIPVG+VAVET+TV IPADP LDS +++ QAGQVWFP
Sbjct: 1938 LEIMQPWAQTVVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFP 1997
Query: 1984 DSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFV 2043
DSA KTAQA+ DFNRE LPL + ANWRGFSGG +D+++ +L+ G+ IV+ LR Y+QPV +
Sbjct: 1998 DSAFKTAQAINDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLREYRQPVLI 2057
Query: 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRL 2103
YIP AELRGG+W V+D IN H+EMYADR ++G +LEPEG +EIKFR K+L++ M R+
Sbjct: 2058 YIPPQAELRGGSWAVIDPTINPRHMEMYADRESRGGILEPEGTVEIKFRRKDLVKTMRRV 2117
Query: 2104 DQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAA 2163
D + L +L + A + L+ ++K RE+ L+P Y QVA +FA+LHDT RM
Sbjct: 2118 DPVYMRLAERL--GTPELSAADRKDLESKLKEREEFLIPIYHQVAMQFADLHDTPGRMQE 2175
Query: 2164 KGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEI 2223
KG I +++DW SR+FF RLRR + E +VK A LT M+++WF++ E
Sbjct: 2176 KGAITDILDWKTSRTFFYWRLRRLLLE-DVVKKKIHDANPELTDGQIQAMLRRWFVEVE- 2233
Query: 2224 ARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVL 2260
K W ++ W + ++ ++E GV+ V+
Sbjct: 2234 GTVKAYLWDSNKDLVEWLE-----KQLMEEEGVRSVV 2265
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2304 | ||||||
| 255545642 | 2259 | Homomeric Acetyl-CoA Carboxylase (Hom-AC | 0.977 | 0.997 | 0.852 | 0.0 | |
| 225459364 | 2257 | PREDICTED: acetyl-CoA carboxylase 1-like | 0.978 | 0.999 | 0.851 | 0.0 | |
| 224066915 | 2276 | predicted protein [Populus trichocarpa] | 0.983 | 0.995 | 0.843 | 0.0 | |
| 157427568 | 2271 | acetyl-CoA carboxylase [Jatropha curcas] | 0.980 | 0.994 | 0.846 | 0.0 | |
| 449445226 | 2323 | PREDICTED: acetyl-CoA carboxylase 1-like | 0.981 | 0.973 | 0.838 | 0.0 | |
| 449479913 | 2323 | PREDICTED: LOW QUALITY PROTEIN: acetyl-C | 0.981 | 0.973 | 0.837 | 0.0 | |
| 356508126 | 2260 | PREDICTED: acetyl-CoA carboxylase 1-like | 0.979 | 0.998 | 0.832 | 0.0 | |
| 224082168 | 2264 | predicted protein [Populus trichocarpa] | 0.976 | 0.993 | 0.834 | 0.0 | |
| 356515814 | 2260 | PREDICTED: acetyl-CoA carboxylase 1-like | 0.979 | 0.998 | 0.830 | 0.0 | |
| 226425249 | 2260 | acetyl-CoA carboxylase 1 [Arachis hypoga | 0.979 | 0.998 | 0.829 | 0.0 |
| >gi|255545642|ref|XP_002513881.1| Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) [Ricinus communis] gi|223546967|gb|EEF48464.1| Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 4079 bits (10578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1955/2292 (85%), Positives = 2110/2292 (92%), Gaps = 39/2292 (1%)
Query: 13 LGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAY 72
+ RGNG++NG VP RSPA +SEVDEFC +LGGKKPIHSILIANNGMAAVKFIRS+RTWAY
Sbjct: 5 VARGNGYVNGVVPTRSPATISEVDEFCYALGGKKPIHSILIANNGMAAVKFIRSVRTWAY 64
Query: 73 ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRV 132
ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+T V
Sbjct: 65 ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEITHV 124
Query: 133 DAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192
DAVWPGWGHASE PELPD L+ KGI+FLGPPA SMAALGDKIGSSLIAQAA+VPTLPWSG
Sbjct: 125 DAVWPGWGHASENPELPDALNAKGIVFLGPPAVSMAALGDKIGSSLIAQAADVPTLPWSG 184
Query: 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252
SHVKIPPESCL+TIPD++YR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND
Sbjct: 185 SHVKIPPESCLITIPDEMYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 244
Query: 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI 312
DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI
Sbjct: 245 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI 304
Query: 313 IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372
IEEGP+TVAPL TVKKLEQAARRLAKCVNYVGAATVEYLYSM+TGEYYFLELNPRLQVEH
Sbjct: 305 IEEGPVTVAPLVTVKKLEQAARRLAKCVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH 364
Query: 373 PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQA 432
PVTEWIAEINLPAAQVAVGMGIPLW+IPEIRRFYGMEHGG Y+AWRKTSV ATPFDFD+A
Sbjct: 365 PVTEWIAEINLPAAQVAVGMGIPLWKIPEIRRFYGMEHGGGYNAWRKTSV-ATPFDFDEA 423
Query: 433 ESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ 492
ESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ
Sbjct: 424 ESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ 483
Query: 493 FGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
FGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDY+IDLLHASDY++NKIHTGWLDSR
Sbjct: 484 FGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYSIDLLHASDYKDNKIHTGWLDSR 543
Query: 553 IAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNI 612
IAMRVRAERPPWYLSVVGGALYKASASSAAMVSDY+GYLEKGQIPPKHISLVNSQVSLNI
Sbjct: 544 IAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYVGYLEKGQIPPKHISLVNSQVSLNI 603
Query: 613 EGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRL 672
EGSKY IDMVR GPGSY LRMNESEIEAEIHTLRDGGLLMQLDGNSHV+YAEEEAAGTRL
Sbjct: 604 EGSKYMIDMVRGGPGSYRLRMNESEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAGTRL 663
Query: 673 LIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPAS 732
LIDGRTCLLQNDHDPSKL+AETPCKLLRYLVSDGSHI+ADTPYAEVEVMKMCMPLLSPAS
Sbjct: 664 LIDGRTCLLQNDHDPSKLIAETPCKLLRYLVSDGSHIEADTPYAEVEVMKMCMPLLSPAS 723
Query: 733 GVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAAS 792
GV+QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GSFP+LGPPTA+SGKVHQRCAAS
Sbjct: 724 GVIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGSFPLLGPPTAVSGKVHQRCAAS 783
Query: 793 LNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCK 852
LNAARMILAGY+HN +EVVQNLLNCLDSPELP LQWQEC++VL+TRLPKDL+NELESK K
Sbjct: 784 LNAARMILAGYDHNFDEVVQNLLNCLDSPELPFLQWQECLSVLATRLPKDLRNELESKYK 843
Query: 853 EFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912
EFE +SSSQN+DFPAKLLRGVLEAHL SC +KE G+QERL+EPLMSLVKSYEGGRESHAR
Sbjct: 844 EFEGMSSSQNIDFPAKLLRGVLEAHLSSCPEKEIGAQERLVEPLMSLVKSYEGGRESHAR 903
Query: 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRL 972
+IVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLKVVDIVLSHQGV+ KNKLILRL
Sbjct: 904 IIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQGVRSKNKLILRL 963
Query: 973 MEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSELEMF 1032
MEQLVYPNPAAYRDKLIRFS LNHT+YSELALKASQLLEQTKLSELRS+IARSLSELEMF
Sbjct: 964 MEQLVYPNPAAYRDKLIRFSQLNHTSYSELALKASQLLEQTKLSELRSTIARSLSELEMF 1023
Query: 1033 TEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1092
TEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP
Sbjct: 1024 TEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1083
Query: 1093 YLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVIIKSL 1152
YLVKGSVRMQWHR GLIASWEFLEEHI RKNG EDQ ++P+VEK+SERKWGAMVIIKSL
Sbjct: 1084 YLVKGSVRMQWHRSGLIASWEFLEEHIGRKNGSEDQMSDEPVVEKYSERKWGAMVIIKSL 1143
Query: 1153 QSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQ 1212
Q P I++AALRETAH+ +++I GS Q+A++GNMMHIALVG+NNQMSLLQDSGDEDQAQ
Sbjct: 1144 QFLPAIINAALRETAHNLHEAIPNGSMQSANFGNMMHIALVGINNQMSLLQDSGDEDQAQ 1203
Query: 1213 ERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLR 1272
ERINKLAKILKEQEVGS L +AGVGVISCIIQRDEGRAPMRHSFHWS EK YYEEEPLLR
Sbjct: 1204 ERINKLAKILKEQEVGSCLRTAGVGVISCIIQRDEGRAPMRHSFHWSAEKLYYEEEPLLR 1263
Query: 1273 HLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSNDG 1332
HLEPPLSIYLELDKLKGY NI+YT SRDRQWHLYTVVDKP+PI+RMFLRTL+RQPT+N+G
Sbjct: 1264 HLEPPLSIYLELDKLKGYGNIKYTPSRDRQWHLYTVVDKPVPIKRMFLRTLLRQPTTNEG 1323
Query: 1333 FMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILREQ 1392
F ++ + R Q+ MSFTSR +LRSL+AAMEELELNVHNA+V SDHA MYLCILREQ
Sbjct: 1324 FTAHQGLGVEVPRTQFDMSFTSRSILRSLVAAMEELELNVHNATVSSDHAHMYLCILREQ 1383
Query: 1393 KINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAYSG 1452
+I+DLVPYPKRVDVDA QEE A+E +LEELAREIHA+ GVRMH+L VCEWEVK W+ SG
Sbjct: 1384 QIDDLVPYPKRVDVDAAQEEAAVERILEELAREIHASAGVRMHRLNVCEWEVKFWITSSG 1443
Query: 1453 QANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVL 1512
QANGAWRVV+TNVTGHTCAV+IYRELED+SKH VVYHS++++G LHGV VNA YQ LGVL
Sbjct: 1444 QANGAWRVVITNVTGHTCAVHIYRELEDSSKHGVVYHSISIQGPLHGVLVNAIYQPLGVL 1503
Query: 1513 DQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFE 1572
D+KRLLARRS+TTYCYDFPL AFE
Sbjct: 1504 DRKRLLARRSSTTYCYDFPL-------------------------------------AFE 1526
Query: 1573 TALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCM 1631
TALEQ WASQ P +PKD +LLKVTEL FAD G+WGTPLV +ER G+N++GMVAWCM
Sbjct: 1527 TALEQIWASQLPGTEKPKDNSLLKVTELVFADQKGSWGTPLVPMERPAGINDVGMVAWCM 1586
Query: 1632 EMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARI 1691
EM TPEFPSGRT+LIVANDVTFKAGSFGPREDAFF AVTDLAC KKLPLIYLAANSGARI
Sbjct: 1587 EMSTPEFPSGRTVLIVANDVTFKAGSFGPREDAFFFAVTDLACTKKLPLIYLAANSGARI 1646
Query: 1692 GVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSI 1751
GVAEEVK+CF + W+DE +P+RGF YVYL+ EDY IGSSVIAHE+ L SGETRWV+D+I
Sbjct: 1647 GVAEEVKSCFRVCWSDESSPERGFQYVYLSSEDYNDIGSSVIAHELNLPSGETRWVIDAI 1706
Query: 1752 VGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP 1811
VGKEDGLGVENL+GSGAIA AYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP
Sbjct: 1707 VGKEDGLGVENLSGSGAIASAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP 1766
Query: 1812 IILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871
IILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTV+DDLEG+SAILKWLS PP+
Sbjct: 1767 IILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVADDLEGVSAILKWLSCTPPY 1826
Query: 1872 IGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA 1931
+GG LP++ P+DP +RPVEY PENSCDPRAAI G LD NGKW+GGIFDKDSFVE LEGWA
Sbjct: 1827 VGGTLPVLCPVDPTERPVEYFPENSCDPRAAISGVLDGNGKWLGGIFDKDSFVEILEGWA 1886
Query: 1932 RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991
RTVVTGRA+LGGIPVG++AVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ
Sbjct: 1887 RTVVTGRAKLGGIPVGVIAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1946
Query: 1992 ALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2051
A++DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM EL
Sbjct: 1947 AILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMGEL 2006
Query: 2052 RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLM 2111
RGGAWVVVDS+INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ+LI
Sbjct: 2007 RGGAWVVVDSQINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQQLIAWK 2066
Query: 2112 AKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVV 2171
AKLQEA+N+ T + ES+QQQIK+RE+QLLP YTQ+AT+FAELHD+SLRMAAKGVI+EVV
Sbjct: 2067 AKLQEARNSGTYGVFESIQQQIKSRERQLLPVYTQIATRFAELHDSSLRMAAKGVIREVV 2126
Query: 2172 DWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAW 2231
DW +SR++F +RL RR+AE ++KT+ AAG L+HKSAI++IK WFL+S+IA GK AW
Sbjct: 2127 DWGRSRTYFYKRLCRRIAEGEMIKTVKDAAGHQLSHKSAIDLIKNWFLESDIASGKADAW 2186
Query: 2232 LDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSC 2291
DDE FF WKD NYE+K+QEL +QKVLLQLTNIG S DL+ALPQGLA LL KV+PS
Sbjct: 2187 EDDEAFFAWKDVPGNYEEKLQELRIQKVLLQLTNIGESMLDLKALPQGLAALLEKVEPSS 2246
Query: 2292 REQLIGEISKAL 2303
R LI E+ K L
Sbjct: 2247 RGLLIDELRKVL 2258
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459364|ref|XP_002285808.1| PREDICTED: acetyl-CoA carboxylase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4063 bits (10538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1955/2295 (85%), Positives = 2105/2295 (91%), Gaps = 40/2295 (1%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MAGLGRGNG I+G V +R+P+ S++DEFCR+LGG +PIHSILI+NNGMAAVKFIRS+RT
Sbjct: 1 MAGLGRGNGLIDG-VTLRTPSTSSQIDEFCRALGGTRPIHSILISNNGMAAVKFIRSVRT 59
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFGTEKAI LVAMATPEDMRINAEHIR+ADQFVEVPGGTNNNNYANVQLIVEMAE+
Sbjct: 60 WAYETFGTEKAISLVAMATPEDMRINAEHIRMADQFVEVPGGTNNNNYANVQLIVEMAEI 119
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
T VDAVWPGWGHASE PELPD L+ KGI+FLGPPATSM ALGDKIGSSLIAQAA+VPTLP
Sbjct: 120 THVDAVWPGWGHASENPELPDALNAKGIVFLGPPATSMGALGDKIGSSLIAQAADVPTLP 179
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHV+IP ESCLVTIPD+VYR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 180 WSGSHVRIPSESCLVTIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 239
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEV+ALFKQVQGEVPGSPIF MKVASQSRHLEVQLLCDQ+GNVAALHSRDCSVQRRH
Sbjct: 240 HNDDEVKALFKQVQGEVPGSPIFTMKVASQSRHLEVQLLCDQHGNVAALHSRDCSVQRRH 299
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ
Sbjct: 300 QKIIEEGPITVAPHETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 359
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGG YDAWR+TSV+ATPFDF
Sbjct: 360 VEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDAWRRTSVVATPFDF 419
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+AES RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 420 DKAESIRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 479
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIA MVLGLKEIQIRGEIR+NVDYTIDLLHASDYRENKIHTGWL
Sbjct: 480 DSQFGHVFAFGESRALAIATMVLGLKEIQIRGEIRSNVDYTIDLLHASDYRENKIHTGWL 539
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDY+GYLEKGQIPPKHISLVNSQVS
Sbjct: 540 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYVGYLEKGQIPPKHISLVNSQVS 599
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDMVR GPGSY LRMNESEIE+EIHTLRDGGLLMQLDGNSH++YAEEEAAG
Sbjct: 600 LNIEGSKYTIDMVRGGPGSYRLRMNESEIESEIHTLRDGGLLMQLDGNSHIIYAEEEAAG 659
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLI GRTCLLQNDHDPSKLVAETPCKLLRYL+SD SH+DADTPYAEVEVMKMCMPLLS
Sbjct: 660 TRLLIGGRTCLLQNDHDPSKLVAETPCKLLRYLISDNSHVDADTPYAEVEVMKMCMPLLS 719
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASG++QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GSFPILGPPT ISGKVHQRC
Sbjct: 720 PASGIIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGSFPILGPPTVISGKVHQRC 779
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AAS+NAARMILAGY+HNI+EVVQNLL+CLDSPELP LQWQEC+AVL+TRLPKDL+NELES
Sbjct: 780 AASINAARMILAGYDHNIDEVVQNLLSCLDSPELPFLQWQECLAVLATRLPKDLRNELES 839
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KEFE ISSSQNV+FPAKLLRGVL+AHL SC DKE+G+QERL+EPLMSLVKSYEGGRES
Sbjct: 840 KYKEFEGISSSQNVEFPAKLLRGVLDAHLCSCPDKEKGAQERLVEPLMSLVKSYEGGRES 899
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HAR+IVQSLFEEYLS+EELFSD IQADVIERLRLQYKKDLLK+VDIVLSHQGV+ KNKLI
Sbjct: 900 HARIIVQSLFEEYLSIEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGVRSKNKLI 959
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
LRLMEQLVYPNPAAYRDKLIRFSALNHT+YSELALKASQLLEQTKLSELRSSIARSLSEL
Sbjct: 960 LRLMEQLVYPNPAAYRDKLIRFSALNHTSYSELALKASQLLEQTKLSELRSSIARSLSEL 1019
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTE+GE+MDTP+RKSAI+ERME LVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL
Sbjct: 1020 EMFTEEGENMDTPRRKSAINERMEALVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1079
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGSVRMQWHR GLIASWEFLEEH+ERKN EDQ ++ L+EKH+E+KWGAMVII
Sbjct: 1080 YQPYLVKGSVRMQWHRSGLIASWEFLEEHLERKNASEDQISDKSLIEKHNEKKWGAMVII 1139
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSLQ P ++SAALRET H +SI GS + S+GNMMHIALVG+NNQMSLLQDSGDED
Sbjct: 1140 KSLQFLPTVISAALRETTHHFEESIPSGSIEQDSHGNMMHIALVGINNQMSLLQDSGDED 1199
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLA+ILKEQEV S L +AGVGVISCIIQRDEGRAPMRHSFHWS EK YYEEEP
Sbjct: 1200 QAQERINKLARILKEQEVSSSLRAAGVGVISCIIQRDEGRAPMRHSFHWSVEKLYYEEEP 1259
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTS 1329
LLRHLEPPLSIYLELDKLKGY+NI+YT SRDRQWHLYTVVDK LPI+RMFLRTLVRQPTS
Sbjct: 1260 LLRHLEPPLSIYLELDKLKGYENIKYTPSRDRQWHLYTVVDKQLPIQRMFLRTLVRQPTS 1319
Query: 1330 NDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCIL 1389
+G Y D+GT + Q TMSFTS+ +LRSLM AMEELEL+ HNA+VKSDH+ MYL IL
Sbjct: 1320 -EGLTLYQGLDVGTTQTQSTMSFTSKSILRSLMTAMEELELHGHNATVKSDHSHMYLYIL 1378
Query: 1390 REQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMA 1449
+EQ+I+DLVPYPKRV + AGQEE +E +LEELA EIHA+VGVRMH+LGVCEWEVKL +A
Sbjct: 1379 QEQQIDDLVPYPKRVVIGAGQEEAGVERILEELAHEIHASVGVRMHRLGVCEWEVKLCIA 1438
Query: 1450 YSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSL 1509
+GQA G+WRVVV NVTGHTC V+IYRELED SKH VVYHS + +G L GV VNA YQ L
Sbjct: 1439 SAGQAYGSWRVVVANVTGHTCTVHIYRELEDASKHRVVYHSKSAQGHLQGVPVNAHYQHL 1498
Query: 1510 GVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQ 1569
GVLD+KRLLARRSNTTYCYDFPL
Sbjct: 1499 GVLDRKRLLARRSNTTYCYDFPL------------------------------------- 1521
Query: 1570 AFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVA 1628
AFETAL+Q WASQ + RP DK L KVTEL FAD G+WGT LV VER+PG N++GMVA
Sbjct: 1522 AFETALQQLWASQSQGINRPNDKVLFKVTELAFADKRGSWGTHLVPVERTPGENDVGMVA 1581
Query: 1629 WCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSG 1688
W MEM TPEFP+GRTILIVANDVTFKAGSFGPREDAFFLAVTDLAC++KLPLIYLAANSG
Sbjct: 1582 WRMEMSTPEFPNGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACSEKLPLIYLAANSG 1641
Query: 1689 ARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVV 1748
ARIGVAEEVKACF+IGW+DE +P+RGF YVYLTPEDYARIGSSVIAHE+ +ESGETRWV+
Sbjct: 1642 ARIGVAEEVKACFKIGWSDESSPERGFQYVYLTPEDYARIGSSVIAHELSMESGETRWVI 1701
Query: 1749 DSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRL 1808
D+IVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRL
Sbjct: 1702 DTIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRL 1761
Query: 1809 DQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYV 1868
DQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEG+SAILKWLSYV
Sbjct: 1762 DQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSAILKWLSYV 1821
Query: 1869 PPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE 1928
P H+GGALPI+ P DPP+RPVEY PENSCDPRAAICG +++GKW+GG+FDKDSFVETLE
Sbjct: 1822 PSHVGGALPILKPSDPPERPVEYFPENSCDPRAAICGAPNSSGKWLGGLFDKDSFVETLE 1881
Query: 1929 GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1988
GWARTVVTGRA+LGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK
Sbjct: 1882 GWARTVVTGRAKLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1941
Query: 1989 TAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048
T+QAL+DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM
Sbjct: 1942 TSQALLDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2001
Query: 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLI 2108
ELRGGAWVVVDSRINSDHIEMYA+RTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ+LI
Sbjct: 2002 GELRGGAWVVVDSRINSDHIEMYAERTAKGNVLEPEGMIEIKFRTKELLECMGRLDQQLI 2061
Query: 2109 DLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIK 2168
+L AKLQEAK++R VESLQQQIKAREKQLLP YTQ+AT+FAELHDTSLRMAAKGVIK
Sbjct: 2062 NLKAKLQEAKSSRVHGTVESLQQQIKAREKQLLPVYTQIATRFAELHDTSLRMAAKGVIK 2121
Query: 2169 EVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKE 2228
EVVDW SRSFF RRL RRV E SL+K + AAGD ++HK A+++IK+WFLDSEIA G +
Sbjct: 2122 EVVDWGNSRSFFYRRLHRRVIEGSLIKVVRDAAGDQMSHKCAMDLIKKWFLDSEIASGSK 2181
Query: 2229 GAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVD 2288
AW DD+ FFTWK+D NYE+K+QEL QKVLL L+ IG+S SDLQ+LPQGLA LL KV+
Sbjct: 2182 DAWADDQAFFTWKNDPANYEEKLQELRAQKVLLHLSKIGDSASDLQSLPQGLAALLQKVE 2241
Query: 2289 PSCREQLIGEISKAL 2303
PS R QLIGE+ K L
Sbjct: 2242 PSSRAQLIGELRKVL 2256
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066915|ref|XP_002302277.1| predicted protein [Populus trichocarpa] gi|222844003|gb|EEE81550.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 4055 bits (10516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1950/2312 (84%), Positives = 2099/2312 (90%), Gaps = 46/2312 (1%)
Query: 1 MSEAQRRSAMA-GLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
MSEAQRR + +GRGNG+ING IRSPA +S VD FCRSLGGKKPIHSIL+ANNGMA
Sbjct: 1 MSEAQRRPPITLAVGRGNGYINGIASIRSPATISLVDHFCRSLGGKKPIHSILVANNGMA 60
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVKF+RSIRTWAYETFGT+KAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN
Sbjct: 61 AVKFMRSIRTWAYETFGTDKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 120
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
VQLIVEMAE+T VDAVWPGWGHASE PELPD L+ KGI+FLGPPATSMAALGDKIGSSLI
Sbjct: 121 VQLIVEMAEITHVDAVWPGWGHASENPELPDALNAKGIVFLGPPATSMAALGDKIGSSLI 180
Query: 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239
AQAA+VPTLPWSGSHVK+ P+SCLVTIPD++YR+ACVYTTEEAIASCQVVGYPAMIKASW
Sbjct: 181 AQAADVPTLPWSGSHVKLSPQSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASW 240
Query: 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 299
GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD YGNVAALH
Sbjct: 241 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDHYGNVAALH 300
Query: 300 SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359
SRDCS+QRRHQKIIEEGPITVAP++TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY
Sbjct: 301 SRDCSIQRRHQKIIEEGPITVAPVDTVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 360
Query: 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419
YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI EIRRFYGMEHGG YDAWRK
Sbjct: 361 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIAEIRRFYGMEHGGGYDAWRK 420
Query: 420 TSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
TS++ATPFDFD+AES RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV
Sbjct: 421 TSLVATPFDFDKAESIRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 480
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY
Sbjct: 481 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 540
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
R+NKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAA+VSDYIGYLEKGQIPPK
Sbjct: 541 RDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAVVSDYIGYLEKGQIPPK 600
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ------ 653
HISLVNSQVSLNIEGSKY IDMVR GPGSY LRMN+SE+E EIHTLRDGGLLMQ
Sbjct: 601 HISLVNSQVSLNIEGSKYTIDMVREGPGSYKLRMNKSELEVEIHTLRDGGLLMQASIHFH 660
Query: 654 --LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDA 711
LDGNSHV+YAEEEAAGTRLLIDGRTCLLQNDHDPSKL+AETPCKLLRYLV DGSHIDA
Sbjct: 661 GLLDGNSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLMAETPCKLLRYLVLDGSHIDA 720
Query: 712 DTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771
D PY EVEVMKMCMPLLSPASG++QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GS
Sbjct: 721 DMPYVEVEVMKMCMPLLSPASGLIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGS 780
Query: 772 FPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQEC 831
FP+LGPPTAISGKVHQRCAASLNAARMILAGY+HNI+E +QNLL CLDSPELP LQWQEC
Sbjct: 781 FPVLGPPTAISGKVHQRCAASLNAARMILAGYDHNIDEAMQNLLICLDSPELPFLQWQEC 840
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQER 891
+AVL+ RLPKDL+ ELE+ +EFE +SSS N+DFPAKLL+GVLEAHL SC +KE+G+QER
Sbjct: 841 LAVLANRLPKDLRTELEATYREFEGVSSSLNIDFPAKLLKGVLEAHLSSCPEKEKGAQER 900
Query: 892 LIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLK 951
L+EPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLK
Sbjct: 901 LVEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLK 960
Query: 952 VVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLE 1011
VVDIVLSHQGV+ KNKLIL LMEQLVYPNPAAYRDKLIRFS LNHTNYSELALKASQLLE
Sbjct: 961 VVDIVLSHQGVRSKNKLILCLMEQLVYPNPAAYRDKLIRFSQLNHTNYSELALKASQLLE 1020
Query: 1012 QTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFD 1071
QTKLSELRS+IARSLSELEMFTEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFD
Sbjct: 1021 QTKLSELRSTIARSLSELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFD 1080
Query: 1072 HSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPE 1131
H DHTLQRRVVETYVRRLYQPYLVKGSVRMQWHR GLIASWEFLEEHIER NG DQT +
Sbjct: 1081 HGDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRSGLIASWEFLEEHIERNNGSGDQTSD 1140
Query: 1132 QPLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIA 1191
+PLVEKH E+KWGAMVIIKSLQ P I+SAALRET H +++IS GS + S+GNMMHIA
Sbjct: 1141 KPLVEKHCEQKWGAMVIIKSLQFLPAIISAALRETVHDPHETISNGSLEPTSFGNMMHIA 1200
Query: 1192 LVGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAP 1251
LVG+NN MSLLQDSGDEDQAQERINKLAKILKEQEVGS LHSAGVGVISCIIQRDEGRAP
Sbjct: 1201 LVGINNPMSLLQDSGDEDQAQERINKLAKILKEQEVGSSLHSAGVGVISCIIQRDEGRAP 1260
Query: 1252 MRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK 1311
MRHSFHWS EK YY EEPLLRHLEPPLSIYLELDKLKGY+NIQYT SRDRQWHLYTVVDK
Sbjct: 1261 MRHSFHWSAEKLYYAEEPLLRHLEPPLSIYLELDKLKGYENIQYTPSRDRQWHLYTVVDK 1320
Query: 1312 PLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELN 1371
P+PIRRMFLRTLVRQ T N+GF +Y M T R W +SFTS+ +LRSL+AAMEELELN
Sbjct: 1321 PVPIRRMFLRTLVRQTTMNEGFTAYQGLGMETARTHWAVSFTSKSILRSLVAAMEELELN 1380
Query: 1372 VHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVG 1431
HN +VKSDHA MYLCILREQ+I+DLVPYPK+V++DA QEE A+EA+LE LAREIHA VG
Sbjct: 1381 AHNTTVKSDHAHMYLCILREQQIDDLVPYPKKVEIDAEQEEVAVEAILEGLAREIHAFVG 1440
Query: 1432 VRMHKLGVCEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSV 1491
VRMH+LGVCEWEVKLWMA SGQANGAWRVVV NVTGHTCAV+IYRELEDTSKH VVYHS+
Sbjct: 1441 VRMHRLGVCEWEVKLWMASSGQANGAWRVVVANVTGHTCAVHIYRELEDTSKHRVVYHSI 1500
Query: 1492 AVRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSF 1551
+V+G LH V VNA YQ LG LD+KRL+AR+S+TTYCYDFPL
Sbjct: 1501 SVQGPLHLVPVNAHYQPLGALDRKRLMARKSSTTYCYDFPL------------------- 1541
Query: 1552 NLSISDCKSCSCEKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTP 1611
AFET LEQ WASQFP M + +LKVTEL FA+++G+WGTP
Sbjct: 1542 ------------------AFETVLEQIWASQFPGMEKPEGKVLKVTELIFANENGSWGTP 1583
Query: 1612 LVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTD 1671
L+ +R GLN+ GMVAWCME+ TPEFP GRTIL+VANDVTFKAGSFG REDAFFLAVTD
Sbjct: 1584 LISTQRPAGLNDFGMVAWCMEILTPEFPLGRTILVVANDVTFKAGSFGQREDAFFLAVTD 1643
Query: 1672 LACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSS 1731
LAC KK+PLIYLAANSGARIGVA+EVK+CF++GW+DEL PDRGF YVYL+P D+ARI SS
Sbjct: 1644 LACNKKIPLIYLAANSGARIGVADEVKSCFKVGWSDELFPDRGFQYVYLSPLDHARIRSS 1703
Query: 1732 VIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTV 1791
VIAHE+KLE+GETRWV+D+IVGKEDGLGVENL+GSGAIA AYSRAYKETFTLTYVTGRTV
Sbjct: 1704 VIAHELKLENGETRWVIDAIVGKEDGLGVENLSGSGAIASAYSRAYKETFTLTYVTGRTV 1763
Query: 1792 GIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTV 1851
GIGAYL RLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTV
Sbjct: 1764 GIGAYLTRLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTV 1823
Query: 1852 SDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNG 1911
SDDLEG+SAI KWLS VP +GGALPI SPLD P+RPV+Y PENSCDPRAAICG D +G
Sbjct: 1824 SDDLEGVSAIFKWLSCVPHRVGGALPISSPLDSPERPVDYFPENSCDPRAAICGIFDGSG 1883
Query: 1912 KWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1971
KW+GGIFDKDSFVETLEGWARTVVTGRA+LGGIPVGIVAVETQTVMQVIPADPGQLDSHE
Sbjct: 1884 KWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1943
Query: 1972 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIV 2031
RVVPQAGQVWFPDSATKTAQA+ DFNREELPLFILANWRGFSGGQRDLFEGILQAG+TIV
Sbjct: 1944 RVVPQAGQVWFPDSATKTAQAIFDFNREELPLFILANWRGFSGGQRDLFEGILQAGATIV 2003
Query: 2032 ENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKF 2091
ENLR YKQPVFVYIPMM ELRGGAW V+DS+INSDHIEMYADRTAKGNVLEPEGMIEIKF
Sbjct: 2004 ENLRNYKQPVFVYIPMMGELRGGAWAVLDSKINSDHIEMYADRTAKGNVLEPEGMIEIKF 2063
Query: 2092 RTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKF 2151
RTK+LLECMGRLDQ+LI+L KLQEA+++ M +SLQQQIK REKQLLP YTQ+ATKF
Sbjct: 2064 RTKDLLECMGRLDQQLINLKLKLQEARSSAPYGMADSLQQQIKTREKQLLPVYTQIATKF 2123
Query: 2152 AELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAI 2211
AELHD+SLRM AKGVI+EVVDW +SR FFC RLRRR+AE L+K + AAG LTHKSA+
Sbjct: 2124 AELHDSSLRMEAKGVIREVVDWARSRHFFCGRLRRRIAECLLIKDVIDAAGQQLTHKSAM 2183
Query: 2212 EMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTS 2271
+MIK WFL+S+ ARG+E AW+DDE FF WKDDS NYE K+QEL VQKVLLQLT++G S S
Sbjct: 2184 DMIKIWFLNSDTARGREDAWVDDEAFFAWKDDSGNYEAKLQELRVQKVLLQLTSVGESMS 2243
Query: 2272 DLQALPQGLATLLSKVDPSCREQLIGEISKAL 2303
DL+ALPQGLA LLSKV+PS RE L+ E+ K L
Sbjct: 2244 DLKALPQGLAALLSKVEPSSREHLVDELRKVL 2275
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157427568|gb|ABP02014.1| acetyl-CoA carboxylase [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 4032 bits (10457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1945/2297 (84%), Positives = 2095/2297 (91%), Gaps = 38/2297 (1%)
Query: 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSI 67
+ G NG+ING V +RSPA +SEVDEFC +LGG PIHSILIANNGMAAVKF+RSI
Sbjct: 11 TGTGGCCSCNGYINGVVSMRSPATISEVDEFCHALGGNSPIHSILIANNGMAAVKFMRSI 70
Query: 68 RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127
RTWAYETFG EKAILLVAMATPEDM+INAEHIRIADQFVEVPGGTNNNNYANVQLI+EMA
Sbjct: 71 RTWAYETFGNEKAILLVAMATPEDMKINAEHIRIADQFVEVPGGTNNNNYANVQLILEMA 130
Query: 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPT 187
E TRVDAVWPGWGHASE PELPD LS KGI+FLGPPATSMAALGDKIGSSLIAQAA+VPT
Sbjct: 131 EGTRVDAVWPGWGHASENPELPDALSAKGIVFLGPPATSMAALGDKIGSSLIAQAADVPT 190
Query: 188 LPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR 247
LPWSGSHVKIPPESCL+ IPD+VYR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR
Sbjct: 191 LPWSGSHVKIPPESCLIAIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR 250
Query: 248 KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR 307
KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ+GNVAALHSRDCSVQR
Sbjct: 251 KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQHGNVAALHSRDCSVQR 310
Query: 308 RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
RHQKIIEEGPITVAPLETVKKLEQAARRLAK VNYVGAATVEYLYSMETGEYYFLELNPR
Sbjct: 311 RHQKIIEEGPITVAPLETVKKLEQAARRLAKSVNYVGAATVEYLYSMETGEYYFLELNPR 370
Query: 368 LQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPF 427
LQVEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYG+E+GG YDAWRKTSV+ATPF
Sbjct: 371 LQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGVENGGGYDAWRKTSVVATPF 430
Query: 428 DFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE 487
DFD+AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE
Sbjct: 431 DFDKAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE 490
Query: 488 FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTG 547
FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDY+IDLLHASDYR+NKIHTG
Sbjct: 491 FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYSIDLLHASDYRDNKIHTG 550
Query: 548 WLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQ 607
WLDSRIAMRVRA+RPPWYLSVVGGALYKASASSAAMVSDY+GYLEKGQIPPKHISLVNSQ
Sbjct: 551 WLDSRIAMRVRAKRPPWYLSVVGGALYKASASSAAMVSDYVGYLEKGQIPPKHISLVNSQ 610
Query: 608 VSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEA 667
VSLNIEGSKY I+MVR GPGSY LRMNESEIEAEIHTLRDGGLLMQLDGNSHV+YAEEEA
Sbjct: 611 VSLNIEGSKYVINMVRGGPGSYRLRMNESEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEA 670
Query: 668 AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPL 727
AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLR+LV DGSHI+ADTPYAEVEVMKMCMPL
Sbjct: 671 AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRFLVLDGSHIEADTPYAEVEVMKMCMPL 730
Query: 728 LSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQ 787
LSPASGVLQFKM+EGQAMQAGELIARL+LDDPSAVRK E F+GSFPILGPPTAISGKVHQ
Sbjct: 731 LSPASGVLQFKMSEGQAMQAGELIARLELDDPSAVRKPELFHGSFPILGPPTAISGKVHQ 790
Query: 788 RCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNEL 847
RCAASLNAA MILAGYEHNI+EVVQNLLNCLDSPELP LQWQEC++VL+TRLPKDL+NEL
Sbjct: 791 RCAASLNAACMILAGYEHNIDEVVQNLLNCLDSPELPFLQWQECLSVLATRLPKDLRNEL 850
Query: 848 ESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGR 907
ESK + FE ISSSQNVDFPAKLLRGVLEAHL SC +KE+G+QERL+EPLMSLVKSYEGGR
Sbjct: 851 ESKYRGFEGISSSQNVDFPAKLLRGVLEAHLSSCPEKEKGAQERLVEPLMSLVKSYEGGR 910
Query: 908 ESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNK 967
ESHARVIVQSLF+EYLSVEELF D IQADVIERLRLQYKKDLLKVVDIVLSHQGV+ KNK
Sbjct: 911 ESHARVIVQSLFDEYLSVEELFRDNIQADVIERLRLQYKKDLLKVVDIVLSHQGVRSKNK 970
Query: 968 LILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLS 1027
LILRLMEQLVYPNPAAYRDKLIRFS LNHT+YSELALKASQLLEQTKLSELRS IARSLS
Sbjct: 971 LILRLMEQLVYPNPAAYRDKLIRFSQLNHTSYSELALKASQLLEQTKLSELRSIIARSLS 1030
Query: 1028 ELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVR 1087
ELEMFTEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVR
Sbjct: 1031 ELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVR 1090
Query: 1088 RLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMV 1147
RLYQPYLVK SVRMQWHR GLIASWEFLEEHI RKNG EDQ ++P++EKH +RKWGAMV
Sbjct: 1091 RLYQPYLVKESVRMQWHRSGLIASWEFLEEHIGRKNGYEDQMSDEPVMEKHCDRKWGAMV 1150
Query: 1148 IIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGD 1207
IIKSLQ P I+SAALRET H+ +++I S + +YGNMMHIALVG+NNQMSLLQDSGD
Sbjct: 1151 IIKSLQFLPAIISAALRETTHNLHEAIPNRSTELDNYGNMMHIALVGINNQMSLLQDSGD 1210
Query: 1208 EDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEE 1267
EDQAQERI KLAKILKEQEVGS L +AGV VISCIIQRDEGRAPMRHSFHWS EK YYEE
Sbjct: 1211 EDQAQERIKKLAKILKEQEVGSSLRTAGVEVISCIIQRDEGRAPMRHSFHWSEEKLYYEE 1270
Query: 1268 EPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQP 1327
EPLLRHLEPPLSIYLELDKLK Y NIQYT SRDRQWHLYTVVDKP+ I+RMFLRTLVRQP
Sbjct: 1271 EPLLRHLEPPLSIYLELDKLKSYGNIQYTPSRDRQWHLYTVVDKPVSIQRMFLRTLVRQP 1330
Query: 1328 TSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLC 1387
T+N+ F + M +AQWTMSFTSR +LRSL+AAMEELELN+HNA+VKSDHA MYLC
Sbjct: 1331 TTNEVFTACQGLGMEAPQAQWTMSFTSRSILRSLVAAMEELELNMHNATVKSDHAHMYLC 1390
Query: 1388 ILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLW 1447
ILREQ+I+DLVPYPKRVD++AGQEE AI +LEELAREIHA+VGV+MH+L VCEWEVKLW
Sbjct: 1391 ILREQQIDDLVPYPKRVDIEAGQEEVAIGRILEELAREIHASVGVKMHRLNVCEWEVKLW 1450
Query: 1448 MAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQ 1507
M GQANGAWRVV+TNVTGHTCAV+ YRELED SKH VVYHSV+V+G LHGV VNA YQ
Sbjct: 1451 MTSCGQANGAWRVVITNVTGHTCAVHTYRELEDASKHGVVYHSVSVQGPLHGVLVNAVYQ 1510
Query: 1508 SLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCY 1567
SLGVLD+KRLLARRSNTTYCYDFPL
Sbjct: 1511 SLGVLDRKRLLARRSNTTYCYDFPL----------------------------------- 1535
Query: 1568 LQAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGM 1626
AFETALEQ WASQF + K L+K TEL F+D G+WGTPLV V+R GLN+IGM
Sbjct: 1536 --AFETALEQIWASQFTGTGKLKCNVLVKATELVFSDQKGSWGTPLVPVDRPAGLNDIGM 1593
Query: 1627 VAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAAN 1686
+AW ME+ TPEFPSGRTILIVANDVTFKAGSFGPREDAFF AVTDLAC KKLPLIYLAAN
Sbjct: 1594 IAWTMELSTPEFPSGRTILIVANDVTFKAGSFGPREDAFFYAVTDLACTKKLPLIYLAAN 1653
Query: 1687 SGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRW 1746
SGARIGVAEEVK+CF++GW+DE +P+ GF YVYL+PEDY I SSVIAHE+KL +GETRW
Sbjct: 1654 SGARIGVAEEVKSCFKVGWSDETSPEGGFQYVYLSPEDYTHIASSVIAHELKLSNGETRW 1713
Query: 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQ 1806
V+D+IVGKEDGLGVENL+GSGAIA AYSRAYKETFTLTYVTGRTVGIGAYLARLGMRC+Q
Sbjct: 1714 VIDAIVGKEDGLGVENLSGSGAIASAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCMQ 1773
Query: 1807 RLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLS 1866
R+DQPIILTGFSALNKLLGREVYSSH+QLGGPK+MATNGVVHLTVSDDLEG+SAIL WLS
Sbjct: 1774 RVDQPIILTGFSALNKLLGREVYSSHIQLGGPKVMATNGVVHLTVSDDLEGVSAILNWLS 1833
Query: 1867 YVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVET 1926
+PP IGG LPI+ P DP +RPVEY PENSCDPRAAI G LD NGKW+GGIFDK+SFVET
Sbjct: 1834 CIPPCIGGTLPILGPSDPTERPVEYFPENSCDPRAAISGSLDGNGKWLGGIFDKNSFVET 1893
Query: 1927 LEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSA 1986
LEGWARTVVTGRA+LGGIPVG++AVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSA
Sbjct: 1894 LEGWARTVVTGRAKLGGIPVGVIAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSA 1953
Query: 1987 TKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP 2046
TKTAQA++DFNREELPLFILA WRGFSGGQRDLFEGILQAGSTIVENLRTY QPVFVYIP
Sbjct: 1954 TKTAQAILDFNREELPLFILAYWRGFSGGQRDLFEGILQAGSTIVENLRTYNQPVFVYIP 2013
Query: 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQK 2106
MM ELRGGAWVVVDS+INSDHIEMYADRTAKGNVLEPEG+IEIKFRTKELLE MGRLD++
Sbjct: 2014 MMGELRGGAWVVVDSQINSDHIEMYADRTAKGNVLEPEGIIEIKFRTKELLESMGRLDKQ 2073
Query: 2107 LIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGV 2166
LI L AKLQEA+N+ MVE LQQQIK+REKQLLP YTQ+AT+FAELHD+SLRMAAKGV
Sbjct: 2074 LITLKAKLQEARNSWNFGMVEDLQQQIKSREKQLLPIYTQIATRFAELHDSSLRMAAKGV 2133
Query: 2167 IKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARG 2226
I+E+VDWDKSR++F +RLRRR+AE SL+KT+ AAGD L+HKSA+++IK WFLDS+IARG
Sbjct: 2134 IREIVDWDKSRAYFYKRLRRRIAEGSLIKTVKDAAGDQLSHKSAMDLIKNWFLDSDIARG 2193
Query: 2227 KEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSK 2286
KE AW +DE FF WKDD YE+K+QEL VQKVL+QLTNIG+S SDL+ALPQGLA LL K
Sbjct: 2194 KEDAWGNDEAFFAWKDDQGKYEEKLQELRVQKVLVQLTNIGDSMSDLKALPQGLAALLRK 2253
Query: 2287 VDPSCREQLIGEISKAL 2303
V+PS R Q+I E+ K +
Sbjct: 2254 VEPSSRGQIIEELRKVI 2270
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445226|ref|XP_004140374.1| PREDICTED: acetyl-CoA carboxylase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4024 bits (10435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1931/2304 (83%), Positives = 2089/2304 (90%), Gaps = 42/2304 (1%)
Query: 1 MSEAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAA 60
MSEA R+S + GRGNG++NGA+PIR+ A+ EVDEFC+SLGGKKPIHSILIANNGMAA
Sbjct: 60 MSEALRKSNVINFGRGNGYLNGAIPIRNATAVPEVDEFCQSLGGKKPIHSILIANNGMAA 119
Query: 61 VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120
VKFIRS+RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV
Sbjct: 120 VKFIRSVRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 179
Query: 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA 180
QLIVEMAE+T VDAVWPGWGHASE PELPD L+ KGIIFLGPP+ SMAALGDKIGSSLIA
Sbjct: 180 QLIVEMAEITHVDAVWPGWGHASENPELPDALNAKGIIFLGPPSISMAALGDKIGSSLIA 239
Query: 181 QAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
QAA VPTLPWSGSHVKIPP+SCLVTIPDDVYR+ACVYTTEEAIASCQVVGYPAMIKASWG
Sbjct: 240 QAAEVPTLPWSGSHVKIPPDSCLVTIPDDVYREACVYTTEEAIASCQVVGYPAMIKASWG 299
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA+QSRHLEVQLLCDQYGNVAALHS
Sbjct: 300 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAAQSRHLEVQLLCDQYGNVAALHS 359
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY
Sbjct: 360 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 419
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHPVTEWIAEINLPAAQV+VGMGIPLWQIPEIRRFYG+EHGG YDAWRKT
Sbjct: 420 FLELNPRLQVEHPVTEWIAEINLPAAQVSVGMGIPLWQIPEIRRFYGVEHGGGYDAWRKT 479
Query: 421 SVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK 480
SV ATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQEL+FKSKPNVWAYFSVK
Sbjct: 480 SVAATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELNFKSKPNVWAYFSVK 539
Query: 481 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR 540
SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYT+DLL+A DYR
Sbjct: 540 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTVDLLNALDYR 599
Query: 541 ENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKH 600
ENKIHTGWLDSRIAMRVRAERPPWY+SVVGGAL+KAS SSAAMVSDYIGYLEKGQIPPKH
Sbjct: 600 ENKIHTGWLDSRIAMRVRAERPPWYISVVGGALFKASTSSAAMVSDYIGYLEKGQIPPKH 659
Query: 601 ISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHV 660
ISLV+SQVSLNIEGSKY IDMVR GPGSY LRMN SEIEAEIHTLRDGGLLMQLDGNSHV
Sbjct: 660 ISLVHSQVSLNIEGSKYTIDMVRGGPGSYRLRMNGSEIEAEIHTLRDGGLLMQLDGNSHV 719
Query: 661 VYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720
+YAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSD SHIDAD PYAEVEV
Sbjct: 720 IYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDDSHIDADAPYAEVEV 779
Query: 721 MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTA 780
MKMCMPLLSPASGV+ F+M+EGQAMQAGELIA+LDLDDPSAVRKAEPF+GSFPILGPPTA
Sbjct: 780 MKMCMPLLSPASGVVHFEMSEGQAMQAGELIAKLDLDDPSAVRKAEPFHGSFPILGPPTA 839
Query: 781 ISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLP 840
ISGKVHQRCAA+LNAARMILAGYEHNIEEVVQNLLNCLDSPELP LQWQECM+VL+TRLP
Sbjct: 840 ISGKVHQRCAANLNAARMILAGYEHNIEEVVQNLLNCLDSPELPFLQWQECMSVLATRLP 899
Query: 841 KDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLV 900
K+LK ELE+K +EFE ISSSQNVDFPAKLLR +LEAHL SC +KE+G+QERL+EPL+S+V
Sbjct: 900 KELKFELEAKYREFEGISSSQNVDFPAKLLRSILEAHLSSCPEKEKGAQERLLEPLVSVV 959
Query: 901 KSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQ 960
KSY+GGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLKVVDIVLSHQ
Sbjct: 960 KSYDGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQ 1019
Query: 961 GVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1020
G++ KNKLIL+LMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS
Sbjct: 1020 GIRSKNKLILQLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1079
Query: 1021 SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRR 1080
+IARSLSELEMFTEDGE+MDTPKRKSAIDERME LVS PLAVEDALVGLFDHSDHTLQRR
Sbjct: 1080 NIARSLSELEMFTEDGENMDTPKRKSAIDERMEALVSVPLAVEDALVGLFDHSDHTLQRR 1139
Query: 1081 VVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSE 1140
VVETYVRRLYQPYLVKGSVRMQWHR GLI SWEFLEEHIERKNG +DQ Q VEKHSE
Sbjct: 1140 VVETYVRRLYQPYLVKGSVRMQWHRSGLIGSWEFLEEHIERKNGIDDQEYSQS-VEKHSE 1198
Query: 1141 RKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMS 1200
RKWGAM+I+KSLQ P LSAAL+ET H+ N++ S + ++GNM+HIALVG+NNQMS
Sbjct: 1199 RKWGAMIILKSLQLLPTTLSAALKETTHNGNEATRDKSPEAMNFGNMVHIALVGINNQMS 1258
Query: 1201 LLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSP 1260
LLQDSGDEDQAQERINKLAKILKEQE+GS L SAGV VISCIIQRDEGRAPMRHSFHWS
Sbjct: 1259 LLQDSGDEDQAQERINKLAKILKEQEIGSSLRSAGVAVISCIIQRDEGRAPMRHSFHWSA 1318
Query: 1261 EKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFL 1320
EK +YEEEPLLRHLEPPLSIYLELDKLKGY NI+YT SRDRQWHLYTV DKP I+RMFL
Sbjct: 1319 EKLHYEEEPLLRHLEPPLSIYLELDKLKGYGNIRYTPSRDRQWHLYTVQDKPGLIQRMFL 1378
Query: 1321 RTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSD 1380
RTLVRQP SN+G ++YP D+ + + +SFTSR +LRSLM AMEELELN HN+++K D
Sbjct: 1379 RTLVRQPVSNEGLVAYPGLDVESRKP---LSFTSRSILRSLMTAMEELELNSHNSAIKPD 1435
Query: 1381 HAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVC 1440
HA MYL ILREQ+I DLVPY KR D ++E A+E +L ELAREI + VGVRMHKLGVC
Sbjct: 1436 HAHMYLYILREQQIGDLVPYHKRAIFDTEEKEAAVETILGELAREIQSFVGVRMHKLGVC 1495
Query: 1441 EWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGV 1500
EWEVKLW+ SGQANGAWRVVVTNVTGHTC V+IYRE+EDT++H V+YHSV + LHGV
Sbjct: 1496 EWEVKLWLDSSGQANGAWRVVVTNVTGHTCTVHIYREVEDTNQHRVLYHSVTKQAPLHGV 1555
Query: 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKS 1560
V+AQ+Q LGVLD KRL ARRSNTTYCYDFPL
Sbjct: 1556 PVSAQHQPLGVLDLKRLSARRSNTTYCYDFPL---------------------------- 1587
Query: 1561 CSCEKCYLQAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSP 1619
AFETALE+SW SQFPN+ +P++K LL VTEL F+D G+WGTPL+ V+R P
Sbjct: 1588 ---------AFETALEKSWESQFPNIGKPEEKVLLNVTELSFSDQKGSWGTPLIPVQRQP 1638
Query: 1620 GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLP 1679
G N+IGM+AW MEM TPEFPSGR IL+VANDVTF+AGSFGPREDAFFLAVTDLAC++KLP
Sbjct: 1639 GQNDIGMIAWLMEMSTPEFPSGRQILVVANDVTFRAGSFGPREDAFFLAVTDLACSRKLP 1698
Query: 1680 LIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKL 1739
LIYLAANSGARIGVA+EVK+CF +GW+DE +P+RGF YVYLTPEDYARI SSVIAHE+++
Sbjct: 1699 LIYLAANSGARIGVADEVKSCFRVGWSDESSPERGFQYVYLTPEDYARIKSSVIAHEVQM 1758
Query: 1740 ESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR 1799
+GE RWV+D+IVGKEDGLGVENLTGSGAIAGAYSRAY ETFTLTYVTGRTVGIGAYLAR
Sbjct: 1759 PNGEARWVIDTIVGKEDGLGVENLTGSGAIAGAYSRAYNETFTLTYVTGRTVGIGAYLAR 1818
Query: 1800 LGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS 1859
LGMRCIQRLDQPIILTGFS LNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS
Sbjct: 1819 LGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS 1878
Query: 1860 AILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFD 1919
+ILKWLSYVP H+GG LPI PLDPPDR VEY PENSCDPRAAICG LD +GKW+GGIFD
Sbjct: 1879 SILKWLSYVPSHMGGELPISKPLDPPDREVEYSPENSCDPRAAICGALDTSGKWMGGIFD 1938
Query: 1920 KDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQ 1979
KDSF+ETLEGWARTVVTGRA+LGGIPVGI+AVETQTVMQVIPADPGQLDSHERVVPQAGQ
Sbjct: 1939 KDSFIETLEGWARTVVTGRAKLGGIPVGIIAVETQTVMQVIPADPGQLDSHERVVPQAGQ 1998
Query: 1980 VWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQ 2039
VWFPDSA+KTAQAL+DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQ
Sbjct: 1999 VWFPDSASKTAQALLDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQ 2058
Query: 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLEC 2099
PVFVYIPMM ELRGGAWVVVDSRINS HIEMYA+ TA+GNVLEPEGMIEIKFRT+ELLEC
Sbjct: 2059 PVFVYIPMMGELRGGAWVVVDSRINSQHIEMYAETTARGNVLEPEGMIEIKFRTRELLEC 2118
Query: 2100 MGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSL 2159
MGRLDQ+LI L AKLQEAK NR + ESLQQQIKAREK+LLP Y Q+AT+FAELHDTSL
Sbjct: 2119 MGRLDQQLISLKAKLQEAKGNRIHNLTESLQQQIKAREKELLPVYVQIATRFAELHDTSL 2178
Query: 2160 RMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFL 2219
RMA KGVIK+V++W SRSFF +RLRRR++E SL+KT+ AAG+ L+H +A+++IK+WF
Sbjct: 2179 RMAEKGVIKKVINWSDSRSFFYKRLRRRISEESLIKTVREAAGEQLSHGAALDLIKEWFS 2238
Query: 2220 DSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQG 2279
+S I E AW+DD TFF+WKDD YE K++EL VQKVLLQLTN+G+S SDLQALPQG
Sbjct: 2239 NSGIETAGEDAWMDDATFFSWKDDPVKYEDKLKELRVQKVLLQLTNLGSSRSDLQALPQG 2298
Query: 2280 LATLLSKVDPSCREQLIGEISKAL 2303
LA LLSKVD S R QLI ++ K L
Sbjct: 2299 LAALLSKVDQSSRVQLIDDLRKVL 2322
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449479913|ref|XP_004155744.1| PREDICTED: LOW QUALITY PROTEIN: acetyl-CoA carboxylase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4018 bits (10421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1929/2304 (83%), Positives = 2086/2304 (90%), Gaps = 42/2304 (1%)
Query: 1 MSEAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAA 60
MSEA R+S + GRGNG++NGA+PIR+ A+ EVDEFC+SLGGKKPIHSILIANNGMAA
Sbjct: 60 MSEALRKSNVINFGRGNGYLNGAIPIRNATAVPEVDEFCQSLGGKKPIHSILIANNGMAA 119
Query: 61 VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120
VKFIRS+RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV
Sbjct: 120 VKFIRSVRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 179
Query: 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA 180
QLIVEMAE+T VDAVWPGWGHASE PELPD L+ KGIIFLGPP+ SMAALGDKIGSSLIA
Sbjct: 180 QLIVEMAEITHVDAVWPGWGHASENPELPDALNAKGIIFLGPPSISMAALGDKIGSSLIA 239
Query: 181 QAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
QAA VPTLPWSGSHVKIPP+SCLVTIPDDVYR+ACVYTTEEAIASCQVVGYPAMIKASWG
Sbjct: 240 QAAEVPTLPWSGSHVKIPPDSCLVTIPDDVYREACVYTTEEAIASCQVVGYPAMIKASWG 299
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA+QSRHLEVQLLCDQYGNVAALHS
Sbjct: 300 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAAQSRHLEVQLLCDQYGNVAALHS 359
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEEGPITVA LETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY
Sbjct: 360 RDCSVQRRHQKIIEEGPITVAQLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 419
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHPVTEWIAEINLPAAQV+VGMGIPLWQIPEIRRFYG+EHGG YDAWRKT
Sbjct: 420 FLELNPRLQVEHPVTEWIAEINLPAAQVSVGMGIPLWQIPEIRRFYGVEHGGGYDAWRKT 479
Query: 421 SVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK 480
SV ATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQEL+FKSKPNVWAYFSVK
Sbjct: 480 SVAATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELNFKSKPNVWAYFSVK 539
Query: 481 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR 540
SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYT+DLL+A DYR
Sbjct: 540 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTVDLLNALDYR 599
Query: 541 ENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKH 600
ENKIHTGWLDSRIAMRVRAERPPWY+SVVGGAL+KAS SSAAMVSDYIGYLEKGQIPPKH
Sbjct: 600 ENKIHTGWLDSRIAMRVRAERPPWYISVVGGALFKASTSSAAMVSDYIGYLEKGQIPPKH 659
Query: 601 ISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHV 660
ISLV+SQVSLNIEGSKY IDMVR GPGSY LRMN SEIEAEIHTLRDGGLLMQLDGNSHV
Sbjct: 660 ISLVHSQVSLNIEGSKYTIDMVRGGPGSYRLRMNGSEIEAEIHTLRDGGLLMQLDGNSHV 719
Query: 661 VYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720
+YAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSD SHIDAD PYAEVEV
Sbjct: 720 IYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDDSHIDADAPYAEVEV 779
Query: 721 MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTA 780
MKMCMPLLSPASGV+ F+M+EGQAMQAGELIA+LDLDDPSAVRKAEPF+GSFPILGPPTA
Sbjct: 780 MKMCMPLLSPASGVVHFEMSEGQAMQAGELIAKLDLDDPSAVRKAEPFHGSFPILGPPTA 839
Query: 781 ISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLP 840
ISGKVHQRCAA+LNAARMILAGYEHNIEEVVQNLLNCLDSPELP LQWQECM+VL+TRLP
Sbjct: 840 ISGKVHQRCAANLNAARMILAGYEHNIEEVVQNLLNCLDSPELPFLQWQECMSVLATRLP 899
Query: 841 KDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLV 900
K+LK ELE+K +EFE ISSSQNVDFPAKLLR +LEAHL SC +KE+G+QERL+EPL+S+V
Sbjct: 900 KELKFELEAKYREFEGISSSQNVDFPAKLLRSILEAHLSSCPEKEKGAQERLLEPLVSVV 959
Query: 901 KSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQ 960
KSY+GGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLKVVDIVLSHQ
Sbjct: 960 KSYDGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQ 1019
Query: 961 GVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1020
G++ KNKLIL+LMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS
Sbjct: 1020 GIRSKNKLILQLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1079
Query: 1021 SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRR 1080
+IARSLSELEMFTEDGE+MDTPKRKSAIDERME LVS PLAVEDALVGLFDHSDHTLQRR
Sbjct: 1080 NIARSLSELEMFTEDGENMDTPKRKSAIDERMEALVSVPLAVEDALVGLFDHSDHTLQRR 1139
Query: 1081 VVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSE 1140
VVETYVRRLYQPYLVKGSVRMQWHR GLI SWEFLEEHIERKNG +DQ Q VEKHSE
Sbjct: 1140 VVETYVRRLYQPYLVKGSVRMQWHRSGLIGSWEFLEEHIERKNGIDDQKYSQS-VEKHSE 1198
Query: 1141 RKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMS 1200
RKWGAM+I+KSLQ P LSAAL+ET H+ N++ S + ++GNM+HIALVG+NNQMS
Sbjct: 1199 RKWGAMIILKSLQLLPTTLSAALKETTHNGNEATRDKSPEAMNFGNMVHIALVGINNQMS 1258
Query: 1201 LLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSP 1260
LLQDSGDEDQAQERINKLAKILKEQE+GS L SAGV VISCIIQRDEGRAPMRHSFHWS
Sbjct: 1259 LLQDSGDEDQAQERINKLAKILKEQEIGSSLRSAGVAVISCIIQRDEGRAPMRHSFHWSA 1318
Query: 1261 EKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFL 1320
EK +YEEEPLLRHLEPPLSIYLELDKLKGY NI+YT SRDRQWHLYTV DKP I+RMFL
Sbjct: 1319 EKLHYEEEPLLRHLEPPLSIYLELDKLKGYGNIRYTPSRDRQWHLYTVQDKPGLIQRMFL 1378
Query: 1321 RTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSD 1380
RTLVRQP SN+G ++YP D+ + + +SFTSR +LRSLM AMEELELN HN+++K D
Sbjct: 1379 RTLVRQPVSNEGLVAYPGLDVESRKP---LSFTSRSILRSLMTAMEELELNSHNSAIKPD 1435
Query: 1381 HAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVC 1440
HA MYL ILREQ+I DLVPY KR D ++E A+E +L ELAREI + VGVRMHKLGVC
Sbjct: 1436 HAHMYLYILREQQIGDLVPYHKRAIFDTEEKEAAVETILGELAREIQSFVGVRMHKLGVC 1495
Query: 1441 EWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGV 1500
EWEVKLW+ SGQANGAWRVVVTNVTGHTC V+IYRE+EDT++H V+YHSV + LHGV
Sbjct: 1496 EWEVKLWLDSSGQANGAWRVVVTNVTGHTCTVHIYREVEDTNQHRVLYHSVTKQAPLHGV 1555
Query: 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKS 1560
V+AQ+Q LGVLD KRL ARRSNTTYCYDFPL
Sbjct: 1556 PVSAQHQPLGVLDLKRLSARRSNTTYCYDFPL---------------------------- 1587
Query: 1561 CSCEKCYLQAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSP 1619
AFETALE+SW SQFPN+ +P++K LL VTEL F+D G+WGTPL+ V+R P
Sbjct: 1588 ---------AFETALEKSWESQFPNIGKPEEKVLLNVTELSFSDQKGSWGTPLIPVQRQP 1638
Query: 1620 GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLP 1679
G N+IGM+AW MEM TPEFPSGR IL+VANDVTF+AGSFGPREDAFFLAVTDLAC++KLP
Sbjct: 1639 GQNDIGMIAWLMEMSTPEFPSGRQILVVANDVTFRAGSFGPREDAFFLAVTDLACSRKLP 1698
Query: 1680 LIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKL 1739
LIYLAANSGARIGVA+EVK+CF +GW+DE +P+RGF YVYLTPEDYARI SSVIAHE+++
Sbjct: 1699 LIYLAANSGARIGVADEVKSCFRVGWSDESSPERGFQYVYLTPEDYARIKSSVIAHEVQM 1758
Query: 1740 ESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR 1799
+GE RWV+D+IVGKEDGLGVENLTGSGAIAGAYSRAY ETFTLTYVTGRTVGIGAYLAR
Sbjct: 1759 PNGEARWVIDTIVGKEDGLGVENLTGSGAIAGAYSRAYNETFTLTYVTGRTVGIGAYLAR 1818
Query: 1800 LGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS 1859
LGMRCIQRLDQPIILTGFS LNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS
Sbjct: 1819 LGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS 1878
Query: 1860 AILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFD 1919
+ILKWLSYVP H+GG LPI PLDPPDR VEY PENSCDPRAAICG LD +GKW+GGIFD
Sbjct: 1879 SILKWLSYVPSHMGGELPISKPLDPPDREVEYSPENSCDPRAAICGALDTSGKWMGGIFD 1938
Query: 1920 KDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQ 1979
KDSF+ETLEGWARTVVTGRA+LGGIPVGI+AVETQTVMQVIPADPGQLDSHERVVPQAGQ
Sbjct: 1939 KDSFIETLEGWARTVVTGRAKLGGIPVGIIAVETQTVMQVIPADPGQLDSHERVVPQAGQ 1998
Query: 1980 VWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQ 2039
VWFPDSA+KTAQAL+DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQ
Sbjct: 1999 VWFPDSASKTAQALLDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQ 2058
Query: 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLEC 2099
P FVYIPMM ELRGGAWVVVDSRINS HIEMYA+ TA+GNVLEPEGMIEIKFRT+ELLEC
Sbjct: 2059 PXFVYIPMMGELRGGAWVVVDSRINSQHIEMYAETTARGNVLEPEGMIEIKFRTRELLEC 2118
Query: 2100 MGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSL 2159
MGRLDQ+LI L AKLQEAK NR + ESLQQQIKAREK+LLP Y Q+AT+FAELHDTSL
Sbjct: 2119 MGRLDQQLISLKAKLQEAKGNRIHNLTESLQQQIKAREKELLPVYVQIATRFAELHDTSL 2178
Query: 2160 RMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFL 2219
RMA KGVIK V++W SRSFF +RLRRR++E SL+KT+ AAG+ L+H +A+++IK+WF
Sbjct: 2179 RMAEKGVIKXVINWSDSRSFFYKRLRRRISEESLIKTVREAAGEQLSHGAALDLIKEWFS 2238
Query: 2220 DSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQG 2279
+S I E AW+DD TFF+WKDD YE K++EL VQKVLLQLTN+G+S SDLQALPQG
Sbjct: 2239 NSGIETAGEDAWMDDATFFSWKDDPVKYEDKLKELRVQKVLLQLTNLGSSRSDLQALPQG 2298
Query: 2280 LATLLSKVDPSCREQLIGEISKAL 2303
LA LLSKVD S R QLI ++ K L
Sbjct: 2299 LAALLSKVDQSSRVQLIDDLRKVL 2322
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508126|ref|XP_003522811.1| PREDICTED: acetyl-CoA carboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 4016 bits (10415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1912/2296 (83%), Positives = 2090/2296 (91%), Gaps = 39/2296 (1%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MA +G NG++N +P R PAA+SEVD+FC +L G +PIHSILIANNGMAAVKFIRS+R+
Sbjct: 1 MADIGHRNGYVNSVLPNRPPAAISEVDDFCNALCGNRPIHSILIANNGMAAVKFIRSVRS 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFG+EKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI+EMAE+
Sbjct: 61 WAYETFGSEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLILEMAEI 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
T VDAVWPGWGHASE PELPD L KGI+FLGPPA SMAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 THVDAVWPGWGHASENPELPDALKAKGIVFLGPPAISMAALGDKIGSSLIAQAAEVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPPES L+TIPD++YR+ACVYTTEEA+ASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPESSLITIPDEIYREACVYTTEEAVASCQVVGYPAMIKASWGGGGKGIRKV 240
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS+QRRH
Sbjct: 241 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSIQRRH 300
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP+ETVK+LEQAARRLAK VNYVGAATVEYL+SMETGEYYFLELNPRLQ
Sbjct: 301 QKIIEEGPITVAPIETVKQLEQAARRLAKSVNYVGAATVEYLFSMETGEYYFLELNPRLQ 360
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQVA+GMGIPLWQIPEIRRFYG+EHGG YDAWRKTSV+ATPFDF
Sbjct: 361 VEHPVTEWIAEINLPAAQVAIGMGIPLWQIPEIRRFYGVEHGGGYDAWRKTSVLATPFDF 420
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+A+STRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 421 DKAQSTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 480
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLL+ASDYRENKIHTGWL
Sbjct: 481 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRENKIHTGWL 540
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALYKAS SSAA+VSDY+GYLEKGQIPPKHISLV+SQVS
Sbjct: 541 DSRIAMRVRAERPPWYLSVVGGALYKASTSSAALVSDYVGYLEKGQIPPKHISLVHSQVS 600
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDM+R G GSY LRMN+SEIEAEIHTLRDGGLLMQLDGNSHV+YAEEEAAG
Sbjct: 601 LNIEGSKYTIDMIRGGSGSYRLRMNQSEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAG 660
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLV+D SH+DADTPYAEVEVMKMCMPLLS
Sbjct: 661 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVADDSHVDADTPYAEVEVMKMCMPLLS 720
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASG++ FKM+EGQAMQAGELIARLDLDDPSAVRKAEPF GSFP+LGPPTAISGKVHQ+C
Sbjct: 721 PASGIIHFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFTGSFPVLGPPTAISGKVHQKC 780
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AASLNAARMILAGYEHNI+EVVQ+LLNCLDSPELP LQWQEC+AVL+TRLPKDLKNELES
Sbjct: 781 AASLNAARMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECLAVLATRLPKDLKNELES 840
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KEFE ISSSQ VDFPAKLL+G+LEAHL SC DKE+G+QERL+EPL+SLVKSYEGGRES
Sbjct: 841 KYKEFEGISSSQIVDFPAKLLKGILEAHLSSCPDKEKGAQERLVEPLLSLVKSYEGGRES 900
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HA +IVQSLFEEYLSVEELFSD IQADVIERLRLQY+KDLLK+VDIVLSHQG+K KNKLI
Sbjct: 901 HAHIIVQSLFEEYLSVEELFSDNIQADVIERLRLQYQKDLLKIVDIVLSHQGIKSKNKLI 960
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
L LM++LVYPNPAAYRD+LIRFS LNHTNYSELALKASQLLEQTKLSELRS+IARSLSEL
Sbjct: 961 LLLMDKLVYPNPAAYRDQLIRFSLLNHTNYSELALKASQLLEQTKLSELRSNIARSLSEL 1020
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTEDGE++DTPKRKSAI++RMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETY+RRL
Sbjct: 1021 EMFTEDGENIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRL 1080
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGSVRMQWHR GLIA+WEF +E+IERKNG EDQT + + EKH E+KWG MVII
Sbjct: 1081 YQPYLVKGSVRMQWHRSGLIATWEFYDEYIERKNGVEDQTLNKMVEEKHGEKKWGVMVII 1140
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSLQ P I+SAALRE ++ +++++ GS + +YGNMMHI LVG+NNQMSLLQDSGDED
Sbjct: 1141 KSLQFLPAIISAALREATNNLHEALTSGSVEPVNYGNMMHIGLVGINNQMSLLQDSGDED 1200
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLAKILKE EVGS + +AGV VISCIIQRDEGRAPMRHSFHWS EK YY EEP
Sbjct: 1201 QAQERINKLAKILKEHEVGSTIRAAGVRVISCIIQRDEGRAPMRHSFHWSEEKLYYAEEP 1260
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVD-KPLPIRRMFLRTLVRQPT 1328
LLRHLEPPLSIYLELDKLK Y+NI+YT SRDRQWHLYTVVD KP PI+RMFLRTL+RQPT
Sbjct: 1261 LLRHLEPPLSIYLELDKLKAYENIRYTPSRDRQWHLYTVVDHKPQPIQRMFLRTLLRQPT 1320
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+N+GF SY D T+R Q MSFT+R + RSLMAAMEELELN HNA++KS+HA MYL I
Sbjct: 1321 TNEGFSSYQRLDAETSRTQLAMSFTTRSIFRSLMAAMEELELNAHNANIKSEHAHMYLYI 1380
Query: 1389 LREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWM 1448
+REQ+I+DLVPYPKR+++DAG+EET +EA+LEELAREIH++VGVRMH+LGV WEVKLWM
Sbjct: 1381 IREQQIDDLVPYPKRINIDAGKEETTVEAILEELAREIHSSVGVRMHRLGVVVWEVKLWM 1440
Query: 1449 AYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQS 1508
A GQANGAWRV+V NVTGHTC V+IYRE EDT H VVY SV+++G LHGV VN YQ
Sbjct: 1441 AACGQANGAWRVIVNNVTGHTCTVHIYREKEDTVTHKVVYRSVSIKGPLHGVPVNENYQP 1500
Query: 1509 LGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYL 1568
LGV+D+KRL AR+++TTYCYDFPL
Sbjct: 1501 LGVIDRKRLSARKNSTTYCYDFPL------------------------------------ 1524
Query: 1569 QAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMV 1627
AFETALEQSWA Q P R KDK LLKVTELKFAD G+WG PLV VER PGLN++GMV
Sbjct: 1525 -AFETALEQSWAIQQPGFQRAKDKNLLKVTELKFADKEGSWGAPLVPVERYPGLNDVGMV 1583
Query: 1628 AWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANS 1687
AW MEM TPEFPSGRTIL+VANDVTFKAGSFGPREDAFF AVTDLAC KKLPLIYLAANS
Sbjct: 1584 AWFMEMCTPEFPSGRTILVVANDVTFKAGSFGPREDAFFRAVTDLACTKKLPLIYLAANS 1643
Query: 1688 GARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWV 1747
GAR+GVAEEVK+CF +GW++E NP+ GF YVYLTPEDYARIGSSVIAHE+KLESGETRWV
Sbjct: 1644 GARLGVAEEVKSCFRVGWSEESNPEHGFQYVYLTPEDYARIGSSVIAHELKLESGETRWV 1703
Query: 1748 VDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR 1807
+D+IVGKEDGLGVENL+GSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR
Sbjct: 1704 IDTIVGKEDGLGVENLSGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR 1763
Query: 1808 LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSY 1867
LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGIS+ILKWLSY
Sbjct: 1764 LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISSILKWLSY 1823
Query: 1868 VPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETL 1927
+P H+GGALPI+ PLDPP+RPVEY PENSCDPRAAI G LD NG+W+GGIFDKDSFVETL
Sbjct: 1824 IPSHVGGALPIVKPLDPPERPVEYFPENSCDPRAAISGTLDGNGRWLGGIFDKDSFVETL 1883
Query: 1928 EGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSAT 1987
EGWARTVVTGRA+LGGIPVGIVAVETQTVMQ+IPADPGQLDSHERVVPQAGQVWFPDSAT
Sbjct: 1884 EGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSAT 1943
Query: 1988 KTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047
KTAQA++DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQP+FVYIPM
Sbjct: 1944 KTAQAILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPM 2003
Query: 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKL 2107
M ELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT+ELLE MGRLDQ+L
Sbjct: 2004 MGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTRELLESMGRLDQQL 2063
Query: 2108 IDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVI 2167
I L KLQEAK+NR +A ESLQQQIK+RE+QLLP YTQ+ATKFAELHDTSLRMAAKGV+
Sbjct: 2064 ITLKVKLQEAKSNRDIAAFESLQQQIKSRERQLLPVYTQIATKFAELHDTSLRMAAKGVV 2123
Query: 2168 KEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGK 2227
+EV+DW SR+ F +RL RR+ E SL+ ++ AAGD L+H SA+ ++K+W+L S+IA+G+
Sbjct: 2124 REVLDWCNSRAVFYQRLHRRIGEQSLINSVRDAAGDQLSHASALNLLKEWYLHSDIAKGR 2183
Query: 2228 EGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKV 2287
AWLDD+ FF WKD+ NYE K++EL QKVLLQLTNIG+S DLQALPQGLA LLSK+
Sbjct: 2184 ADAWLDDKAFFRWKDNPANYENKLKELRAQKVLLQLTNIGDSALDLQALPQGLAALLSKL 2243
Query: 2288 DPSCREQLIGEISKAL 2303
+PS R +L E+ K L
Sbjct: 2244 EPSGRVKLTDELRKVL 2259
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082168|ref|XP_002306591.1| predicted protein [Populus trichocarpa] gi|222856040|gb|EEE93587.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 4009 bits (10396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1933/2316 (83%), Positives = 2080/2316 (89%), Gaps = 66/2316 (2%)
Query: 1 MSEAQRRSAMA-GLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
MSE+ RR + G+GRGNG+ING IRSPA +S VD+FC +LGGKKPIHSILIANNGMA
Sbjct: 1 MSESLRRPPITLGVGRGNGYINGVASIRSPATISLVDQFCHALGGKKPIHSILIANNGMA 60
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVKFIRSIRTWAYETFGT+KA+LLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN
Sbjct: 61 AVKFIRSIRTWAYETFGTDKALLLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 120
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
VQLIVEMAE+T VDAVWPGWGHASE PELPD L KGI+FLGPP+TSMAALGDKIGSSLI
Sbjct: 121 VQLIVEMAEITHVDAVWPGWGHASENPELPDALDAKGIVFLGPPSTSMAALGDKIGSSLI 180
Query: 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239
AQAA+VPTLPWSGSHVKI ESCLV IPD++YR+ACVYTTEEAIASCQVVGYPAMIKASW
Sbjct: 181 AQAADVPTLPWSGSHVKISSESCLVIIPDEIYREACVYTTEEAIASCQVVGYPAMIKASW 240
Query: 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 299
GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH
Sbjct: 241 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 300
Query: 300 SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359
SRDCS+QRRHQKIIEEGPITVAP ETVKKLEQAARRLAKCVNYVGAATVEYLYSM+TGEY
Sbjct: 301 SRDCSIQRRHQKIIEEGPITVAPPETVKKLEQAARRLAKCVNYVGAATVEYLYSMDTGEY 360
Query: 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419
YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI EIRRFYGME+GG YDAWRK
Sbjct: 361 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQISEIRRFYGMEYGGGYDAWRK 420
Query: 420 TSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
TS++ATPFDFD+AES RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV
Sbjct: 421 TSLVATPFDFDKAESIRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 480
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTI+LLHASDY
Sbjct: 481 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTINLLHASDY 540
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
R+NKIHTGWLDSRIAMRVRAER PWYLSVVGG+LYKA ASSAA+VSDYIGYLEKGQIPPK
Sbjct: 541 RDNKIHTGWLDSRIAMRVRAERLPWYLSVVGGSLYKACASSAALVSDYIGYLEKGQIPPK 600
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
HISLVNSQVSLNIEGSKY IDMVR GPGSY LRMNES+IE EIHTLRDG
Sbjct: 601 HISLVNSQVSLNIEGSKYTIDMVREGPGSYRLRMNESQIEVEIHTLRDG----------- 649
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
EEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSH+DAD PYAEVE
Sbjct: 650 ----EEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHVDADMPYAEVE 705
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKMCMPLLSPASGV+QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GSFP+L PPT
Sbjct: 706 VMKMCMPLLSPASGVIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGSFPVLAPPT 765
Query: 780 AISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRL 839
AISGKVHQRCAASLNAARMILAGY+HNI+EVVQNLL CLDSPELP LQWQEC+AVL+TRL
Sbjct: 766 AISGKVHQRCAASLNAARMILAGYDHNIDEVVQNLLVCLDSPELPFLQWQECLAVLATRL 825
Query: 840 PKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSL 899
PKDL+ LE+K +EFE ISSS N+DFPAKLL+GVLE HL SC +KE+G+ ERL+EPLMSL
Sbjct: 826 PKDLRTALEAKFREFEGISSSLNIDFPAKLLKGVLEVHLSSCPEKEKGAHERLVEPLMSL 885
Query: 900 VKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSH 959
VKSYEGGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLL+VVDIVLSH
Sbjct: 886 VKSYEGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLRVVDIVLSH 945
Query: 960 QGVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELR 1019
QGV+ KNKLILRLMEQLVYP+PAAYRDKLIRFS LNHTNYSELALKASQLLE TKLSELR
Sbjct: 946 QGVRSKNKLILRLMEQLVYPSPAAYRDKLIRFSQLNHTNYSELALKASQLLEHTKLSELR 1005
Query: 1020 SSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQR 1079
S+IARSLSELEMFTEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFDHSDHTLQR
Sbjct: 1006 STIARSLSELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQR 1065
Query: 1080 RVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHS 1139
RVVETYVRRLYQPYLVKGSVRMQWHR GLIASWEFLEEHIERKNG EDQ P++PLVEKH
Sbjct: 1066 RVVETYVRRLYQPYLVKGSVRMQWHRSGLIASWEFLEEHIERKNGFEDQMPDKPLVEKHR 1125
Query: 1140 ERKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQM 1199
E+KWGAMVIIKSLQ P I+SAAL ET H + + GS + +GNMMHIALVG+NN M
Sbjct: 1126 EQKWGAMVIIKSLQFLPAIISAALLETTHDPREVVLNGSVEPTGFGNMMHIALVGINNPM 1185
Query: 1200 SLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWS 1259
SLLQDSGDEDQAQERI KLAKILKEQEV S LHSAGV VISCIIQRDEGRAPMRHSFHWS
Sbjct: 1186 SLLQDSGDEDQAQERIKKLAKILKEQEVSSSLHSAGVRVISCIIQRDEGRAPMRHSFHWS 1245
Query: 1260 PEKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMF 1319
EK YY EEPLLRHLEPPLSIYLELDKLKGY++I YTLSRDRQWHLYTVVDKP PIRRMF
Sbjct: 1246 VEKLYYAEEPLLRHLEPPLSIYLELDKLKGYEDIHYTLSRDRQWHLYTVVDKPGPIRRMF 1305
Query: 1320 LRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKS 1379
LRTLVRQPT N+GF +Y + T QWT+S TSR +LRSL+ A+EELELNVHNA+VK
Sbjct: 1306 LRTLVRQPTMNEGFTAYQGLGIETTGTQWTVSLTSRSILRSLVTALEELELNVHNATVKP 1365
Query: 1380 DHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGV 1439
DHA MYLCILREQ+I+DLVPYPK++D+DA QEE A+EA+LE LAREIHA VGVRMH+LG
Sbjct: 1366 DHAHMYLCILREQQIDDLVPYPKKLDIDAEQEEVAVEAILEGLAREIHAAVGVRMHRLGA 1425
Query: 1440 CEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHG 1499
CEWEVKLWMA SGQANGAWR+VVTNVTGHTCAV+IYRELE TSK VVYHS++V G LH
Sbjct: 1426 CEWEVKLWMASSGQANGAWRIVVTNVTGHTCAVHIYRELEHTSKQKVVYHSISVHGPLHL 1485
Query: 1500 VEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCK 1559
V VNA YQ LG LD+KRLLARRS+TTYCYDFPL
Sbjct: 1486 VPVNAHYQPLGSLDRKRLLARRSSTTYCYDFPL--------------------------- 1518
Query: 1560 SCSCEKCYLQAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERS 1618
AFET LEQ WASQF M +PKDK ++KVTEL FAD+ G+WGTPLV +ER
Sbjct: 1519 ----------AFETVLEQIWASQFSGMKKPKDK-VIKVTELVFADEKGSWGTPLVSLERP 1567
Query: 1619 PGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKL 1678
GLN+ GMVAWCME+ TPEFP GRTIL+VANDVTFKAGSFG REDAFFLAVTDLAC KK+
Sbjct: 1568 AGLNDFGMVAWCMEILTPEFPLGRTILVVANDVTFKAGSFGQREDAFFLAVTDLACNKKI 1627
Query: 1679 PLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMK 1738
PLIYLAANSGARIG A+EVK+CF++GW+DE+ PDRGF YVYL+PED+ARIGSSVIAHE+K
Sbjct: 1628 PLIYLAANSGARIGAADEVKSCFKVGWSDEVFPDRGFQYVYLSPEDHARIGSSVIAHELK 1687
Query: 1739 LESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLA 1798
LE+GETRWV+++IVGKEDGLGVENL+GSGAIA AYSRAY ETFTLTYVTGRTVGIGAYL
Sbjct: 1688 LENGETRWVIEAIVGKEDGLGVENLSGSGAIASAYSRAYNETFTLTYVTGRTVGIGAYLT 1747
Query: 1799 RLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGI 1858
RLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEG+
Sbjct: 1748 RLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGV 1807
Query: 1859 SAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIF 1918
SAILKWLS +PP +GGALPI+SP D P+RPVEY PENSCDPRAAICG D NGKW+GGIF
Sbjct: 1808 SAILKWLSCIPPCVGGALPILSPSDSPERPVEYFPENSCDPRAAICGIFDGNGKWLGGIF 1867
Query: 1919 DKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAG 1978
DKDSFVETLEGWARTVVTGRA+LGGIPVGIVAVETQTVM+VIPADPGQLDSHERVVPQAG
Sbjct: 1868 DKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMKVIPADPGQLDSHERVVPQAG 1927
Query: 1979 QVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK 2038
QVWFPDSATKTAQA+ DFNREELPLFILANWRGFSGGQRDLFEGILQAG+TIVENLRTYK
Sbjct: 1928 QVWFPDSATKTAQAIFDFNREELPLFILANWRGFSGGQRDLFEGILQAGATIVENLRTYK 1987
Query: 2039 QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLE 2098
QPVFVYIPMM ELRGGAW V+DS+INSDHIEMYADRTAKGNVLEPEGMIEIKFRTK+LLE
Sbjct: 1988 QPVFVYIPMMGELRGGAWAVLDSKINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKDLLE 2047
Query: 2099 CMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTS 2158
CMGRLDQ+LI+L AKLQE +++ MV+SLQQQIK REKQLLP YTQVATKFAELHD+S
Sbjct: 2048 CMGRLDQQLINLKAKLQETRSSAPYGMVDSLQQQIKTREKQLLPVYTQVATKFAELHDSS 2107
Query: 2159 LRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWF 2218
LRM AKGVI+EVVDW +SR FFCRRL RR+AE SL+K + AAG+ L HKSA++MIK WF
Sbjct: 2108 LRMEAKGVIREVVDWARSRLFFCRRLCRRIAECSLIKDVIDAAGEQLLHKSAMDMIKTWF 2167
Query: 2219 LDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQ 2278
L+S+IA+G+E AW+DDE FF WKDDS NYE K+QEL KVLLQLTNIG S SDL+ALPQ
Sbjct: 2168 LNSDIAKGREDAWMDDEAFFAWKDDSGNYEAKLQELRAHKVLLQLTNIGESQSDLKALPQ 2227
Query: 2279 GLATLLSK-----------VDPSCREQLIGEISKAL 2303
GLA LLSK V+PS RE+L+ E+ K L
Sbjct: 2228 GLAALLSKSRGDALLYLMQVEPSSRERLVDELRKVL 2263
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515814|ref|XP_003526593.1| PREDICTED: acetyl-CoA carboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 4001 bits (10375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1907/2296 (83%), Positives = 2089/2296 (90%), Gaps = 39/2296 (1%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MA +GR NG+ N +P R PAA+SEVDEFC +LGG +PIHSILIANNGMAAVKFIRS+R+
Sbjct: 1 MADIGRRNGYANSVLPNRPPAAISEVDEFCNALGGNRPIHSILIANNGMAAVKFIRSVRS 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFG+EKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI+EMAE+
Sbjct: 61 WAYETFGSEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLILEMAEI 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
T VDAVWPGWGHASE PELPD L KGI+FLGPPA SMAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 THVDAVWPGWGHASENPELPDALKAKGIVFLGPPAISMAALGDKIGSSLIAQAAEVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPPES L+TIPD++YR+ACVYTTEEA+ASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPESSLITIPDEIYREACVYTTEEAVASCQVVGYPAMIKASWGGGGKGIRKV 240
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH
Sbjct: 241 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 300
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP+ETVKKLEQAARRLA VNYVGAATVEYLYSMETGEYYFLELNPRLQ
Sbjct: 301 QKIIEEGPITVAPIETVKKLEQAARRLAISVNYVGAATVEYLYSMETGEYYFLELNPRLQ 360
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQVA+GMG+PLWQIPEIRRFYG+EHGG YDAWRKTSV+ATPFDF
Sbjct: 361 VEHPVTEWIAEINLPAAQVAIGMGVPLWQIPEIRRFYGVEHGGGYDAWRKTSVLATPFDF 420
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+A+STRPKGHCVAVRVTSEDPDDGFKPTSGKVQEL+FKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 421 DKAQSTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELNFKSKPNVWAYFSVKSGGGIHEFS 480
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLL+ASDYRENKIHTGWL
Sbjct: 481 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRENKIHTGWL 540
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERP WYLSVVGGALYKASASSAA+VSDY+GYLEKGQIPPKHISLV+SQVS
Sbjct: 541 DSRIAMRVRAERPAWYLSVVGGALYKASASSAALVSDYVGYLEKGQIPPKHISLVHSQVS 600
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDM+R G GSY LRMN+SEIEAEIHTLRDGGLLMQLDGNSHV+YAEEEAAG
Sbjct: 601 LNIEGSKYTIDMIRGGSGSYRLRMNQSEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAG 660
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLV+D SH+DADTPYAEVEVMKMCMPLLS
Sbjct: 661 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVADDSHVDADTPYAEVEVMKMCMPLLS 720
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASG++ FKM+EGQAMQAGELIARLDLDDPSAVRKAEPF GSFP+LGPPTAISGKVHQ+C
Sbjct: 721 PASGIIHFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFTGSFPVLGPPTAISGKVHQKC 780
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AASLNAARMIL+GYEHNI+EVVQ+LLNCLDSPELP LQWQEC+AVL+TRLPK+LKNELES
Sbjct: 781 AASLNAARMILSGYEHNIDEVVQSLLNCLDSPELPFLQWQECLAVLATRLPKELKNELES 840
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KEFE ISSSQ VDFPAKLL+G++EAHL SC DKE+G+QERL+EPL+SLVKSYEGGRES
Sbjct: 841 KYKEFEGISSSQIVDFPAKLLKGIIEAHLSSCPDKEKGAQERLVEPLLSLVKSYEGGRES 900
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HA +IVQSLF+EYLSVEELFSD IQADVIERLRLQYKKDLLK+VDIVLSHQG+K KNKLI
Sbjct: 901 HAHIIVQSLFDEYLSVEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGIKSKNKLI 960
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
L+LM++LVYPNP AYRD+LIRFS LNHTNYSELALKASQLLEQTKLSELRS+IARSLSEL
Sbjct: 961 LQLMDKLVYPNPVAYRDQLIRFSLLNHTNYSELALKASQLLEQTKLSELRSNIARSLSEL 1020
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTEDGE++DTPKRKSAI++RMEDLVSAP AVEDALVGLFDHSDHTLQRRVVE+Y+RRL
Sbjct: 1021 EMFTEDGENIDTPKRKSAINDRMEDLVSAPFAVEDALVGLFDHSDHTLQRRVVESYIRRL 1080
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGS RMQWHR GLIA+WEF +E+IERKNG EDQ+ + + EKHSE+KWG MVII
Sbjct: 1081 YQPYLVKGSARMQWHRSGLIATWEFYDEYIERKNGVEDQSLSKTVEEKHSEKKWGVMVII 1140
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSLQ P I++AALRE ++ +++++ GS + +YGNMMHI LVG+NNQMSLLQDSGDED
Sbjct: 1141 KSLQFLPAIITAALREATNNPHEALTSGSVEPVNYGNMMHIGLVGINNQMSLLQDSGDED 1200
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLAKILKEQEVGS + +AGVGVISCIIQRDEGRAPMRHSFHWS EK YY EEP
Sbjct: 1201 QAQERINKLAKILKEQEVGSTIRAAGVGVISCIIQRDEGRAPMRHSFHWSEEKLYYAEEP 1260
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVD-KPLPIRRMFLRTLVRQPT 1328
LLRHLEPPLSIYLELDKLK Y+NI+YT SRDRQWHLYTVVD KP PI+RMFLRTLVRQPT
Sbjct: 1261 LLRHLEPPLSIYLELDKLKAYENIRYTPSRDRQWHLYTVVDHKPQPIQRMFLRTLVRQPT 1320
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+N+GF SY D T+R Q MSFTSR + RSLMAAMEELELN HN ++KS+HA MYL I
Sbjct: 1321 TNEGFSSYQRLDAETSRTQLAMSFTSRSIFRSLMAAMEELELNAHNVNIKSEHAHMYLYI 1380
Query: 1389 LREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWM 1448
+REQ+I+DLVPYPKR++++AG+EE +EA+LEELAREIH++VGVRMH+LGV WE+KLWM
Sbjct: 1381 IREQQIDDLVPYPKRINIEAGKEEITVEAVLEELAREIHSSVGVRMHRLGVVVWEIKLWM 1440
Query: 1449 AYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQS 1508
A GQANGAWRV+V NVTGHTC V++YRE EDT H VVY SV+V+G LHGV VN YQ
Sbjct: 1441 AACGQANGAWRVIVNNVTGHTCTVHLYREKEDTITHKVVYSSVSVKGPLHGVAVNENYQP 1500
Query: 1509 LGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYL 1568
LGV+D+KRL AR+++TTYCYDFPL
Sbjct: 1501 LGVIDRKRLSARKNSTTYCYDFPL------------------------------------ 1524
Query: 1569 QAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMV 1627
AFETALEQSWA Q P R KDK LLKVTELKFAD G+WGTPLV VE PGLN++GMV
Sbjct: 1525 -AFETALEQSWAIQQPGFQRAKDKNLLKVTELKFADKEGSWGTPLVPVENYPGLNDVGMV 1583
Query: 1628 AWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANS 1687
AW MEM TPEFPSGRTIL+VANDVTFKAGSFGPREDAFF AVTDLAC KKLPLIYLAANS
Sbjct: 1584 AWFMEMCTPEFPSGRTILVVANDVTFKAGSFGPREDAFFRAVTDLACTKKLPLIYLAANS 1643
Query: 1688 GARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWV 1747
GAR+GVAEEVK+CF +GW++E NP+ GF YVYLTPED ARIGSSVIAHE+KLESGETRWV
Sbjct: 1644 GARLGVAEEVKSCFRVGWSEESNPENGFQYVYLTPEDNARIGSSVIAHELKLESGETRWV 1703
Query: 1748 VDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR 1807
+D+IVGKEDGLGVENL+GSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR
Sbjct: 1704 IDTIVGKEDGLGVENLSGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR 1763
Query: 1808 LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSY 1867
LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEG+S+ILKWLSY
Sbjct: 1764 LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSSILKWLSY 1823
Query: 1868 VPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETL 1927
+P H+GGALPI+ PLDPP+RPVEY PENSCDPRAAI G LD NG+W+GGIFDKDSFVETL
Sbjct: 1824 IPSHVGGALPIVKPLDPPERPVEYFPENSCDPRAAISGTLDGNGRWLGGIFDKDSFVETL 1883
Query: 1928 EGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSAT 1987
EGWARTVVTGRA+LGGIPVG+VAVETQTVMQ+IPADPGQLDSHERVVPQAGQVWFPDSAT
Sbjct: 1884 EGWARTVVTGRAKLGGIPVGVVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSAT 1943
Query: 1988 KTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047
KTAQA++DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQP+FVYIPM
Sbjct: 1944 KTAQAILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPM 2003
Query: 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKL 2107
M ELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT+ELLE MGRLDQ+L
Sbjct: 2004 MGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTRELLESMGRLDQQL 2063
Query: 2108 IDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVI 2167
I L AKLQEAK++R + ESLQQQIK+RE+QLLP YTQ+ATKFAELHDTSLRMAAKGVI
Sbjct: 2064 ITLKAKLQEAKSSRNIVAFESLQQQIKSRERQLLPVYTQIATKFAELHDTSLRMAAKGVI 2123
Query: 2168 KEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGK 2227
+EV+DW SRS F +RL RR+ E SL+ ++ AAGD L+H SA+ ++K+W+L+S+IA+G+
Sbjct: 2124 REVLDWRNSRSVFYQRLHRRIGEQSLINSVRDAAGDQLSHASAMNLLKEWYLNSDIAKGR 2183
Query: 2228 EGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKV 2287
E AWLDDE FF WKD NYE K++EL VQKVLLQLTNIG+S DLQALPQGLA LLSK+
Sbjct: 2184 EDAWLDDEAFFRWKDIPSNYENKLKELRVQKVLLQLTNIGDSALDLQALPQGLAALLSKL 2243
Query: 2288 DPSCREQLIGEISKAL 2303
+P R +L E+ K L
Sbjct: 2244 EPLGRVKLTDELRKVL 2259
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226425249|gb|ACO53624.1| acetyl-CoA carboxylase 1 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 3999 bits (10370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1905/2296 (82%), Positives = 2087/2296 (90%), Gaps = 39/2296 (1%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MAG+GRGNG+ NG VP R PA +SEVDE+C +LGG +PIHSILIANNGMAAVKFIRS+R+
Sbjct: 1 MAGVGRGNGYTNGVVPNRHPATISEVDEYCNALGGTRPIHSILIANNGMAAVKFIRSVRS 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+
Sbjct: 61 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEI 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
TRVDAVWPGWGHASE PELPD L KGI+FLGPPA SMAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 TRVDAVWPGWGHASENPELPDALKAKGIVFLGPPAVSMAALGDKIGSSLIAQAAEVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPP+SCLVTIPD++YR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 240
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH
Sbjct: 241 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 300
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP +TVK+LEQAARRLAK VNYVGAATVEYL+SMETGEYYFLELNPRLQ
Sbjct: 301 QKIIEEGPITVAPPQTVKQLEQAARRLAKSVNYVGAATVEYLFSMETGEYYFLELNPRLQ 360
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQVA+GMGIPLWQ+PEIRRFYG+EHGG DAWRKTS +ATPFDF
Sbjct: 361 VEHPVTEWIAEINLPAAQVAIGMGIPLWQLPEIRRFYGVEHGGGNDAWRKTSALATPFDF 420
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+A+ST+PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 421 DKAQSTKPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 480
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLL+ASDYR+NKIHTGWL
Sbjct: 481 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRDNKIHTGWL 540
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALYKASASSAA+VSDY+GYLEKGQIPPK ISLV+SQVS
Sbjct: 541 DSRIAMRVRAERPPWYLSVVGGALYKASASSAALVSDYVGYLEKGQIPPKRISLVHSQVS 600
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDMVR G GSY LRMN+SE+EAEIHTLRDGGLLMQLDGNSHV+YAEEEAAG
Sbjct: 601 LNIEGSKYTIDMVRGGSGSYRLRMNQSEVEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAG 660
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLIDGRTCLLQNDHDPSKLVAETPCKL+RYLV D SHIDADTPYAEVEVMKMCMPLLS
Sbjct: 661 TRLLIDGRTCLLQNDHDPSKLVAETPCKLMRYLVVDDSHIDADTPYAEVEVMKMCMPLLS 720
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASGV+ FKM+EGQ MQAGELIARLDLDDPSAVRKAEPF G FP+LGPPTA S KVHQ+C
Sbjct: 721 PASGVIHFKMSEGQPMQAGELIARLDLDDPSAVRKAEPFNGKFPVLGPPTATSDKVHQKC 780
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AASL+AA+MILAGYEHNI+EVVQ+LLNCLDSPELP LQWQEC AVL+ RLPKDLKNELES
Sbjct: 781 AASLSAAQMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECFAVLANRLPKDLKNELES 840
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KE+ERISS Q VDFPAKLL+G+LEAHL SC +KE+G+QERLIEPL+SLVKSYEGGRES
Sbjct: 841 KYKEYERISSFQVVDFPAKLLKGILEAHLSSCPNKEKGAQERLIEPLLSLVKSYEGGRES 900
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HAR IVQSLFEEYL VEELFSD IQADVIERLRLQYKKDLLK+VDIVLSHQG+K KNKLI
Sbjct: 901 HARKIVQSLFEEYLFVEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGIKSKNKLI 960
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
LRLM++LVYPNPAAYRD+LIRFS LNHTNYS+LALKASQLLEQTKLSELRS+IARSLSEL
Sbjct: 961 LRLMDKLVYPNPAAYRDQLIRFSQLNHTNYSQLALKASQLLEQTKLSELRSNIARSLSEL 1020
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTEDGE++DTPKRKSAI++RMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETY+RRL
Sbjct: 1021 EMFTEDGENIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRL 1080
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGSVRMQWHR GLIASWEFLEE+IERK+G EDQ ++ LVEKH+E+KWG MV+I
Sbjct: 1081 YQPYLVKGSVRMQWHRSGLIASWEFLEEYIERKSGVEDQMSDKTLVEKHTEKKWGVMVVI 1140
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSL P I++AAL+E ++ ++++S + + +GNMMH+ALVG+NNQMSLLQDSGDED
Sbjct: 1141 KSLHFLPAIITAALKEATNNLHEAVSSAAGEPVKHGNMMHVALVGINNQMSLLQDSGDED 1200
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLAKILKE+EVGS + GVGVISCIIQRDEGR PMRHSFHWS EK YY+EEP
Sbjct: 1201 QAQERINKLAKILKEEEVGSTIRGTGVGVISCIIQRDEGRTPMRHSFHWSAEKLYYQEEP 1260
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVD-KPLPIRRMFLRTLVRQPT 1328
LLRHLEPPLSIYLELDKLKGY+NI+YT SRDRQWHLYTV+D KP P++RMFLRTL+RQPT
Sbjct: 1261 LLRHLEPPLSIYLELDKLKGYENIRYTPSRDRQWHLYTVMDQKPQPVQRMFLRTLLRQPT 1320
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+N+GF SY +D T + MSFTSR + RSLMAAMEELELN HNA+++ +HA MYL I
Sbjct: 1321 TNEGFSSYQRTDAETPSTELAMSFTSRSIFRSLMAAMEELELNSHNATIRPEHAHMYLYI 1380
Query: 1389 LREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWM 1448
+REQ+INDLVPYPK+VD+DAGQEET +EA LEELA EIH++VGVRMH+LGV WEVKLWM
Sbjct: 1381 IREQEINDLVPYPKKVDIDAGQEETTVEATLEELAHEIHSSVGVRMHRLGVVVWEVKLWM 1440
Query: 1449 AYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQS 1508
A QANGAWR+VV NVTGHTC V+IYRE+EDT+ H VVY S+ V+G LHGV VN YQ
Sbjct: 1441 AACAQANGAWRIVVNNVTGHTCTVHIYREMEDTNTHRVVYSSITVKGPLHGVPVNETYQP 1500
Query: 1509 LGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYL 1568
LGV+D+KRL AR+++TT+CYDFPL
Sbjct: 1501 LGVIDRKRLSARKNSTTFCYDFPL------------------------------------ 1524
Query: 1569 QAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMV 1627
AFETALEQSWA Q P RPKDK LLKVTEL+FAD G+WGTPLV VE S GLN++GMV
Sbjct: 1525 -AFETALEQSWAIQQPGFRRPKDKNLLKVTELRFADKEGSWGTPLVPVEHSAGLNDVGMV 1583
Query: 1628 AWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANS 1687
AW M+M TPEFPSGRTIL+VANDVTFKAGSFGPREDAFF AVTDLACAKKLPLIYLAANS
Sbjct: 1584 AWFMDMCTPEFPSGRTILVVANDVTFKAGSFGPREDAFFRAVTDLACAKKLPLIYLAANS 1643
Query: 1688 GARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWV 1747
GAR+GVAEEVKACF++GW++E NP+ GF YVYLTPED+ARIGSSVIAHE+KLESGETRW+
Sbjct: 1644 GARLGVAEEVKACFKVGWSEESNPEHGFQYVYLTPEDFARIGSSVIAHELKLESGETRWI 1703
Query: 1748 VDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR 1807
+D+IVGKEDGLGVENL+GSGAIAG+YSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR
Sbjct: 1704 IDTIVGKEDGLGVENLSGSGAIAGSYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQR 1763
Query: 1808 LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSY 1867
LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEG+SAILKWLSY
Sbjct: 1764 LDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSAILKWLSY 1823
Query: 1868 VPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETL 1927
+P H+GG+LPI+ PLDPP+RPVEYLPENSCDPRAAI G LD NG+W+GGIFDKDSFVETL
Sbjct: 1824 IPSHVGGSLPIVKPLDPPERPVEYLPENSCDPRAAISGTLDGNGRWLGGIFDKDSFVETL 1883
Query: 1928 EGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSAT 1987
EGWARTVVTGRA+LGGIPVGIVAVETQTVMQ+IPADPGQLDSHERVVPQAGQVWFPDSAT
Sbjct: 1884 EGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSAT 1943
Query: 1988 KTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047
KTAQA+MDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQP+FVYIPM
Sbjct: 1944 KTAQAIMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPM 2003
Query: 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKL 2107
M ELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT+ELLECMGRLDQKL
Sbjct: 2004 MGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTRELLECMGRLDQKL 2063
Query: 2108 IDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVI 2167
I L AKLQEAK+ R ESLQQQIK+REKQLLP YTQ+ATKFAELHDTSLRMAAKGVI
Sbjct: 2064 ITLKAKLQEAKDKRDTESFESLQQQIKSREKQLLPLYTQIATKFAELHDTSLRMAAKGVI 2123
Query: 2168 KEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGK 2227
++V+DW SR+ F RRL RR+ E SL+ + AAGD+L+H SA++++K W+L S IA+G+
Sbjct: 2124 RQVLDWGNSRAVFYRRLYRRIGEQSLINNVREAAGDHLSHVSAMDLVKNWYLSSNIAKGR 2183
Query: 2228 EGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKV 2287
+ AWLDDE FF+WK++ NYE K++EL QKVLLQLTNIG+S DLQALPQGLA LLSK+
Sbjct: 2184 KDAWLDDEAFFSWKENPSNYEDKLKELRAQKVLLQLTNIGDSVLDLQALPQGLAALLSKL 2243
Query: 2288 DPSCREQLIGEISKAL 2303
+PS R +L E+ K L
Sbjct: 2244 EPSSRVKLAEELRKVL 2259
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2304 | ||||||
| TAIR|locus:2034310 | 2254 | ACC1 "acetyl-CoA carboxylase 1 | 0.657 | 0.671 | 0.819 | 0.0 | |
| CGD|CAL0005630 | 2271 | ACC1 [Candida albicans (taxid: | 0.549 | 0.557 | 0.412 | 0.0 | |
| POMBASE|SPAC56E4.04c | 2280 | cut6 "acetyl-CoA/biotin carbox | 0.464 | 0.469 | 0.437 | 0.0 | |
| ASPGD|ASPL0000003091 | 2288 | accA [Emericella nidulans (tax | 0.464 | 0.468 | 0.433 | 0.0 | |
| SGD|S000005299 | 2233 | ACC1 "Acetyl-CoA carboxylase, | 0.553 | 0.570 | 0.391 | 0.0 | |
| UNIPROTKB|Q13085 | 2346 | ACACA "Acetyl-CoA carboxylase | 0.474 | 0.466 | 0.426 | 0.0 | |
| MGI|MGI:108451 | 2345 | Acaca "acetyl-Coenzyme A carbo | 0.474 | 0.466 | 0.426 | 0.0 | |
| ZFIN|ZDB-GENE-060526-74 | 2383 | acaca "acetyl-Coenzyme A carbo | 0.474 | 0.459 | 0.420 | 0.0 | |
| RGD|621248 | 2345 | Acaca "acetyl-CoA carboxylase | 0.476 | 0.468 | 0.424 | 0.0 | |
| UNIPROTKB|E2RL01 | 2346 | ACACA "Uncharacterized protein | 0.474 | 0.466 | 0.426 | 0.0 |
| TAIR|locus:2034310 ACC1 "acetyl-CoA carboxylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6455 (2277.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 1247/1522 (81%), Positives = 1364/1522 (89%)
Query: 14 GRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYE 73
G NG+ + P + +S+VDEFC++L GK+PIHSILIANNGMAAVKFIRS+RTWAYE
Sbjct: 3 GSVNGNHSAVGPGINYETVSQVDEFCKALRGKRPIHSILIANNGMAAVKFIRSVRTWAYE 62
Query: 74 TFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVD 133
TFGTEKAILLV MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+TRVD
Sbjct: 63 TFGTEKAILLVGMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVD 122
Query: 134 AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193
AVWPGWGHASE PELPD L KGIIFLGPPA+SMAALGDKIGSSLIAQAA+VPTLPWSGS
Sbjct: 123 AVWPGWGHASENPELPDALDAKGIIFLGPPASSMAALGDKIGSSLIAQAADVPTLPWSGS 182
Query: 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 253
HVKIPP S LVTIP+++YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD
Sbjct: 183 HVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 242
Query: 254 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII 313
EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD++GNV+ALHSRDCSVQRRHQKII
Sbjct: 243 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRHQKII 302
Query: 314 EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHP 373
EEGPITVAP ETVKKLEQAARRLAK VNYVGAATVEYLYSM+TGEYYFLELNPRLQVEHP
Sbjct: 303 EEGPITVAPPETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHP 362
Query: 374 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAE 433
VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG+EHGG YD+WRKTSV+A PFDFD+A+
Sbjct: 363 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGIEHGGGYDSWRKTSVVAFPFDFDKAQ 422
Query: 434 STRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 493
S RPKGHCVAVRVTSEDPDDGFKPTSG+VQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF
Sbjct: 423 SIRPKGHCVAVRVTSEDPDDGFKPTSGRVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 482
Query: 494 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR+NKIHTGWLDSRI
Sbjct: 483 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRDNKIHTGWLDSRI 542
Query: 554 AMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIE 613
AMRVRAERPPWYLSVVGGALYKASA+SAA+VSDY+GYLEKGQIPPKHISLV+SQVSLNIE
Sbjct: 543 AMRVRAERPPWYLSVVGGALYKASATSAAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIE 602
Query: 614 GSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLL 673
GSKY ID+VR G G+Y LRMN+SE+ AEIHTLRDGGLLMQLDG SHV+YAEEEAAGTRLL
Sbjct: 603 GSKYTIDVVRGGSGTYRLRMNKSEVVAEIHTLRDGGLLMQLDGKSHVIYAEEEAAGTRLL 662
Query: 674 IDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG 733
IDGRTCLLQNDHDPSKL+AETPCKL+RYL+SD S+IDADTPYAEVEVMKMCMPLLSPASG
Sbjct: 663 IDGRTCLLQNDHDPSKLMAETPCKLMRYLISDNSNIDADTPYAEVEVMKMCMPLLSPASG 722
Query: 734 VLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASL 793
V+ FKM+EGQAMQAGELIA LDLDDPSAVRKAEPF+GSFP LG PTAISG+VHQRCAA+L
Sbjct: 723 VIHFKMSEGQAMQAGELIANLDLDDPSAVRKAEPFHGSFPRLGLPTAISGRVHQRCAATL 782
Query: 794 NAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKE 853
NAARMILAGYEH ++EVVQ+LLNCLDSPELP LQWQEC AVL+TRLPK+L+N LESK +E
Sbjct: 783 NAARMILAGYEHKVDEVVQDLLNCLDSPELPFLQWQECFAVLATRLPKNLRNMLESKYRE 842
Query: 854 FERIS-SSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912
FE IS +S DFPAKLL+G+LEAHL SC +KERG+ ERLIEPLMSL KSYEGGRESHAR
Sbjct: 843 FESISRNSLTTDFPAKLLKGILEAHLSSCDEKERGALERLIEPLMSLAKSYEGGRESHAR 902
Query: 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRL 972
VIV SLFEEYLSVEELF+D + ADVIER+R YKKDLLK+VDIVLSHQG+K KNKL+LRL
Sbjct: 903 VIVHSLFEEYLSVEELFNDNMLADVIERMRQLYKKDLLKIVDIVLSHQGIKNKNKLVLRL 962
Query: 973 MEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSELEMF 1032
MEQLVYPNPAAYRDKLIRFS LNHTNYSELALKASQLLEQTKLSELRS+IARSLSELEMF
Sbjct: 963 MEQLVYPNPAAYRDKLIRFSTLNHTNYSELALKASQLLEQTKLSELRSNIARSLSELEMF 1022
Query: 1033 TEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1092
TEDGE+MDTPKRKSAI+ER+EDLVSA LAVEDALVGLFDHSDHTLQRRVVETY+RRLYQP
Sbjct: 1023 TEDGENMDTPKRKSAINERIEDLVSASLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQP 1082
Query: 1093 YLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPED-QTPEQPLVEKHSERKWGAMVIIK 1150
Y+VK SVRMQWHR GL+ASWEFLEEH+ERKN G +D T E+ LVEK S+RKWGAMVIIK
Sbjct: 1083 YVVKDSVRMQWHRSGLLASWEFLEEHMERKNIGLDDPDTSEKGLVEKRSKRKWGAMVIIK 1142
Query: 1151 SLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQ 1210
SLQ P I+SAALRET H ND + G+ + GNMMHIA+VG+NNQMSLLQDSGDEDQ
Sbjct: 1143 SLQFLPSIISAALRETKH--NDYETAGAPLS---GNMMHIAIVGINNQMSLLQDSGDEDQ 1197
Query: 1211 AQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYXXXXX 1270
AQER+NKLAKILKE+EV S L SAGVGVISCIIQRDEGR PMRHSFHWS EK YY
Sbjct: 1198 AQERVNKLAKILKEEEVSSSLCSAGVGVISCIIQRDEGRTPMRHSFHWSLEKQYYVEEPL 1257
Query: 1271 XXXXXXXXSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSN 1330
SIYLELDKLKGY NIQYT SRDRQWHLYTV DKP+PI+RMFLR+LVRQ T N
Sbjct: 1258 LRHLEPPLSIYLELDKLKGYSNIQYTPSRDRQWHLYTVTDKPVPIKRMFLRSLVRQATMN 1317
Query: 1331 DGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILR 1390
DGF+ D ++ +M+FTS+ VLRSLM AMEELELN HNA++K DHA M+LCILR
Sbjct: 1318 DGFILQQGQDKQLSQTLISMAFTSKCVLRSLMDAMEELELNAHNAAMKPDHAHMFLCILR 1377
Query: 1391 EQKINDLVPYPKRVDVDAGQXXXXXXXXXXXXXXXIHATVGVRMHKLGVCEWEVKLWMAY 1450
EQ+I+DLVP+P+RV+V+A IH +VGVRMH+LGVCEWEV+LW+
Sbjct: 1378 EQQIDDLVPFPRRVEVNAEDEETTVEMILEEAAREIHRSVGVRMHRLGVCEWEVRLWLVS 1437
Query: 1451 SGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLG 1510
SG A GAWRVVV NVTG TC V+IYRE+E +++++YHS+ +G LH ++ QY+ LG
Sbjct: 1438 SGLACGAWRVVVANVTGRTCTVHIYREVETPGRNSLIYHSITKKGPLHETPISDQYKPLG 1497
Query: 1511 VLDQKRLLARRSNTTYCYDFPL 1532
LD++RL ARRSNTTYCYDFPL
Sbjct: 1498 YLDRQRLAARRSNTTYCYDFPL 1519
|
|
| CGD|CAL0005630 ACC1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 2357 (834.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 551/1335 (41%), Positives = 768/1335 (57%)
Query: 30 AAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATP 89
A S+V +F R+ G I ILIANNG+AAVK IRS+R WAYETFG EKAI MATP
Sbjct: 81 AEPSKVRDFVRAHQGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDEKAIQFTVMATP 140
Query: 90 EDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP 149
ED+ NAE+IR+ADQF+EVPGGTNNNNYANV LIVE+AE T AVW GWGHASE P LP
Sbjct: 141 EDLEANAEYIRMADQFIEVPGGTNNNNYANVDLIVEIAESTNAHAVWAGWGHASENPLLP 200
Query: 150 DTL--STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS---HVKIPPESCLV 204
+ L S K IIF+GPP ++M +LGDKI S+++AQ A VP +PWSG+ VKI P++ LV
Sbjct: 201 EKLAASPKKIIFIGPPGSAMRSLGDKISSTIVAQHAQVPCIPWSGTGVDEVKIDPQTNLV 260
Query: 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG 264
++ DD+Y + C + E+ + + +G+P MIKAS GGGGKGIRKV ++ L+ Q
Sbjct: 261 SVADDIYAKGCCTSPEDGLEKAKKIGFPVMIKASEGGGGKGIRKVDDEKNFITLYNQAAN 320
Query: 265 EVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLE 324
E+PGSPIFIMK+A +RHLEVQLL DQYG +L RDCSVQRRHQKIIEE P+T+A E
Sbjct: 321 EIPGSPIFIMKLAGDARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIARKE 380
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384
T ++E AA RL K V YV A TVEYLYS ++YFLELNPRLQVEHP TE + +NLP
Sbjct: 381 TFHEMENAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPRLQVEHPTTEMVTGVNLP 440
Query: 385 AAQVAVGMGIPLWQIPEIRRFYGME-HGGV---YDAWRKTSVIATPFDFDQAESTRPKGH 440
AAQ+ + MGIP+ +I +IR YG + H ++ +TS+++ Q T PKGH
Sbjct: 441 AAQLQIAMGIPMHRIRDIRTLYGADPHTTTDIDFEFKSETSLVS------QRRPT-PKGH 493
Query: 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFG 500
C A R+TSEDP +GFKP+ G + EL+F+S NVW YFSV + IH FSDSQFGH+FAFG
Sbjct: 494 CTACRITSEDPGEGFKPSGGSLHELNFRSSSNVWGYFSVGNQSSIHSFSDSQFGHIFAFG 553
Query: 501 ESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAE 560
E+R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I TGWLD I ++ AE
Sbjct: 554 ENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETPDFEDNTITTGWLDELITKKLTAE 613
Query: 561 RPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRID 620
RP ++VV GA+ K + +YI LEKGQ+P +++ V EG +Y+
Sbjct: 614 RPDPIVAVVCGAVTKVHIQAEEEKKEYIQSLEKGQVPHRNLLKTIFPVEFIYEGERYKFT 673
Query: 621 MVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCL 680
+ YTL +N S +L DGGLL LDG SH VY +EEA+ TRL +DG+TCL
Sbjct: 674 ATKSSEDKYTLFLNGSRCVVGARSLSDGGLLCALDGKSHSVYWKEEASATRLSVDGKTCL 733
Query: 681 LQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMA 740
L+ ++DP++L +P KL++YLV G H+DA PYAEVEVMKMCMPL++ +GV+Q
Sbjct: 734 LEVENDPTQLRTPSPGKLVKYLVDSGEHVDAGQPYAEVEVMKMCMPLIAQENGVVQLIKQ 793
Query: 741 EGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGK-VHQ--RCAASLNAAR 797
G + AG+++A L LDDPS V+ A+PF G+ P +G P K H+ CA L +
Sbjct: 794 PGSTVNAGDILAILALDDPSKVKHAKPFEGTLPSMGEPNVTGTKPAHKFNHCAGIL---K 850
Query: 798 MILAGYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFE 855
ILAGY++ + +++L L ELP +WQ+ ++ L +RLP L + L + E
Sbjct: 851 NILAGYDNQVILNSTLKSLGEVLKDNELPYSEWQQQISALHSRLPPKLDDGLTALV---E 907
Query: 856 RISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHARVIV 915
R + S+ +FPA R +L+ S A+ E ++ PL+S+ SY+ G H
Sbjct: 908 R-TQSRGAEFPA---RQILKLITKSIAENGNDMLEDVVAPLVSIATSYQNGLVEHEYDYF 963
Query: 916 QSLFEEYLSVEELFS-DQIQAD-VIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLM 973
SL EY VE LFS + ++ D VI +LR + K DL KV+ I LSH V KN LIL ++
Sbjct: 964 ASLINEYYDVESLFSGENVREDNVILKLRDENKSDLKKVIGIGLSHSRVSAKNNLILAIL 1023
Query: 974 ---EQLVYPNP---AAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS---SIAR 1024
E L+ N A+ R+ L + L+ +++ALKA ++L Q L ++ +
Sbjct: 1024 DIYEPLLQSNSSVAASIREALKKLVQLDSRACAKVALKAREILIQCSLPSIKERSDQLEH 1083
Query: 1025 SLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVET 1084
L + T GE K + E + ++V + V D L + D + E
Sbjct: 1084 ILRSSVVQTSYGEIF--AKHREPNLEIIREVVDSKHIVFDVLAQFLINPDPWVAIAAAEV 1141
Query: 1085 YVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWG 1144
YVRR Y+ Y + G + + I W+F ++ + Q + + K
Sbjct: 1142 YVRRSYRAYDL-GKIEYHVNDRLPIVEWKFKLANMGAAGVNDAQQAAAAGGDDSTSMKHA 1200
Query: 1145 AMV-----IIKSLQSFPD---ILSAA-----LRETAHSRNDSISKGSAQTASYGNMMHIA 1191
A V ++ S +L+ A + ET + + A +
Sbjct: 1201 ASVSDLTFVVDSKTEHSTRTGVLAPARHLDDVDETLTAALEQFQPADAISFKAKGETPEL 1260
Query: 1192 LVGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAP 1251
L +N ++ + DE++ RIN++ KE+ L SAGV ++ + G+ P
Sbjct: 1261 LNVLNIVITSIDGYSDENEYLSRINEILCEYKEE-----LISAGVRRVTFVFAHQIGQYP 1315
Query: 1252 MRHSFHWSPEKFYYXXXXXXXXXXXXXSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK 1311
++F P+ Y + LEL +L +D I+ + +R H+Y + K
Sbjct: 1316 KYYTFT-GPD---YEENKVIRHIEPALAFQLELGRLANFD-IKPIFTNNRNIHVYDAIGK 1370
Query: 1312 PLPI-RRMFLRTLVR 1325
P +R F R ++R
Sbjct: 1371 NAPSDKRFFTRGIIR 1385
|
|
| POMBASE|SPAC56E4.04c cut6 "acetyl-CoA/biotin carboxylase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 2300 (814.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 486/1111 (43%), Positives = 696/1111 (62%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
++PA +V ++ S GG I SILIANNG+AAVK IRSIR WAYETF E+AI M
Sbjct: 50 KAPAG--KVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKFTVM 107
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
ATP+D+++NA++IR+ADQ+VEVPGG+NNNNYANV+LIV++AE V AVW GWGHASE P
Sbjct: 108 ATPDDLKVNADYIRMADQYVEVPGGSNNNNYANVELIVDIAERMNVHAVWAGWGHASENP 167
Query: 147 ELPDTLS--TKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH---VKIPPES 201
+LP+ LS +K I+F+GPP ++M +LGDKI S+++AQ+A VP + WSG+ V+I E+
Sbjct: 168 KLPEMLSASSKKIVFIGPPGSAMRSLGDKISSTIVAQSARVPCMSWSGNELDQVRIDEET 227
Query: 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261
+VT+ DDVY++AC+ + EE IA + +GYP MIKAS GGGGKGIR+V + ++ F+Q
Sbjct: 228 NIVTVDDDVYQKACIRSAEEGIAVAEKIGYPVMIKASEGGGGKGIRQVTSTEKFAQAFQQ 287
Query: 262 VQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVA 321
V E+PGSP+F+MK+A Q+RHLEVQ+L DQYGN +L RDCSVQRRHQKIIEE P+T+A
Sbjct: 288 VLDELPGSPVFVMKLAGQARHLEVQILADQYGNNISLFGRDCSVQRRHQKIIEEAPVTIA 347
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEI 381
P T ++E+AA RL + V Y A T+EYLY E +YFLELNPRLQVEHP TE ++ +
Sbjct: 348 PAATFHEMERAAVRLGELVGYASAGTIEYLYEPENDRFYFLELNPRLQVEHPTTEMVSGV 407
Query: 382 NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441
NLPAAQ+ V MG+PL +IP IR YG+ G D+ P F + PKGHC
Sbjct: 408 NLPAAQLQVAMGLPLSRIPHIRELYGLPRDG--DS-EIDFFFQNPESFKVQKVPTPKGHC 464
Query: 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501
VA R+TSEDP +GFKP+SG +++L+F+S NVW YFSV + GGIHEF+DSQFGH+F+F E
Sbjct: 465 VACRITSEDPGEGFKPSSGMIKDLNFRSSSNVWGYFSVGTAGGIHEFADSQFGHIFSFAE 524
Query: 502 SRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER 561
SR + +MV+ LKE+ IRG+ RT V+Y + LL ++ EN+ TGWLD IA +V + R
Sbjct: 525 SRESSRKSMVVALKELSIRGDFRTTVEYLVRLLETKEFSENEFTTGWLDRLIAQKVTSAR 584
Query: 562 PPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDM 621
P L+VV GAL +A A++ + YLE+GQ+P + + + ++YR
Sbjct: 585 PDKMLAVVCGALVRAHATADTQYRAFKSYLERGQVPSREFLKNVYDIEFIYDNTRYRFTA 644
Query: 622 VRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLL 681
R PGSY L +N S A + +L DGGLL+ L+G+S+ VY +E GTR+ ID +C+L
Sbjct: 645 SRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTGTRISIDNLSCML 704
Query: 682 QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAE 741
+ ++DP++L +P KL+R+LV G HI A YAEVEVMKM MPL++ GV+Q
Sbjct: 705 EQENDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQP 764
Query: 742 GQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILA 801
G ++ AG+++ L LDDPS V A PF G P G P K QR A L IL
Sbjct: 765 GASLDAGDILGILTLDDPSRVTHALPFDGQLPNWGEPQIAGNKPCQRYHALLCILLDILK 824
Query: 802 GYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISS 859
GY++ I + L + ELP +W + L R+ L S ++ +
Sbjct: 825 GYDNQIILNSTYNEFVEVLRNHELPYSEWSAHYSALVNRISPVLDKLFVSIIEK----AR 880
Query: 860 SQNVDFPAKLLRGVLEAHLLSCADKERGSQERL---IEPLMSLVKSYEGGRESHARVIVQ 916
S+ +FPAK L ++ + C + + ++L I PL+ ++ Y+ G + H +++
Sbjct: 881 SRKAEFPAKQLEVAIQTY---CDGQNLATTQQLKVQIAPLLKIISDYKDGLKVHEYNVIK 937
Query: 917 SLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLME 974
L EEY +VE+LFS ++ + DVI RLR + K D+ KV+ + LSH + KN L++ +++
Sbjct: 938 GLLEEYYNVEKLFSGINKREEDVILRLRDENKDDVDKVIALALSHSRIGSKNNLLITILD 997
Query: 975 QLVYPNPAAY-----RDKLIRFSALNHTNYSELALKASQLL---EQTKLSELRSSIARSL 1026
L+ P+ + D L + + L+ S+++LKA +LL L+E S + L
Sbjct: 998 -LMKSEPSTFVSLYFNDILRKLTDLDSRVTSKVSLKARELLITCAMPSLNERFSQMEHIL 1056
Query: 1027 SELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYV 1086
+ + G++ + R ++D +++L+ + V D L F H+D + +E YV
Sbjct: 1057 KSSVVESHYGDAKFS-HRTPSLDI-LKELIDSKYTVFDVLPAFFCHTDPWVSLAALEVYV 1114
Query: 1087 RRLYQPYLVKGSVRMQWH-RCGL--IASWEF 1114
RR Y+ Y V + + +H G + +W F
Sbjct: 1115 RRAYRAYSV---LEINYHTEAGTPYVLTWRF 1142
|
|
| ASPGD|ASPL0000003091 accA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 2277 (806.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 489/1128 (43%), Positives = 697/1128 (61%)
Query: 16 GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETF 75
G H++ A P S V +F + G I S+LIANNG+AAVK IRS+R WAYETF
Sbjct: 27 GGNHLDAAAP-------SSVKDFVANHEGHSVITSVLIANNGIAAVKEIRSVRKWAYETF 79
Query: 76 GTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAV 135
G E+AI MATPED+ NA++IR+ADQ+VEVPGGTNNNNYANV+LIV++AE V AV
Sbjct: 80 GNERAIQFTVMATPEDLAANADYIRMADQYVEVPGGTNNNNYANVELIVDVAERMDVHAV 139
Query: 136 WPGWGHASEIPELPDTL--STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193
W GWGHASE P LP++L S K IIF+GPPA++M +LGDKI S+++AQ A VP +PWSG+
Sbjct: 140 WAGWGHASENPRLPESLAASPKKIIFIGPPASAMRSLGDKISSTIVAQHAQVPCIPWSGT 199
Query: 194 ---HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH 250
VK+ E+ +VT+ ++VY + C ++ EE + + +G+P MIKAS GGGGKGIRKV
Sbjct: 200 GVDEVKVD-ENGIVTVEEEVYNKGCTFSPEEGLEKAKQIGFPVMIKASEGGGGKGIRKVE 258
Query: 251 NDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ 310
+++ L+ E+PGSPIFIMK+A +RHLEVQLL DQYGN +L RDCSVQRRHQ
Sbjct: 259 KEEDFINLYNAAANEIPGSPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQRRHQ 318
Query: 311 KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQV 370
KIIEE P+T+A T + +E+AA L K V YV A TVEYLYS ++YFLELNPRLQV
Sbjct: 319 KIIEEAPVTIANPTTFQAMERAAVSLGKLVGYVSAGTVEYLYSHADDKFYFLELNPRLQV 378
Query: 371 EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430
EHP TE + +NLPAAQ+ + MGIPL +I +IR YG++ TS FDF
Sbjct: 379 EHPTTEMVTGVNLPAAQLQIAMGIPLHRIRDIRLLYGVDPN--------TSA-EIDFDFS 429
Query: 431 QAESTR------PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGG 484
ES + PKGH A R+TSEDP +GFKP+SG + EL+F+S NVW YFSV + GG
Sbjct: 430 SEESFKTQRRPQPKGHTTACRITSEDPGEGFKPSSGTMHELNFRSSSNVWGYFSVGTAGG 489
Query: 485 IHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKI 544
IH FSDSQFGH+FA+GE+R+ + +MV+ LKE+ IRG+ RT ++Y I LL + ENKI
Sbjct: 490 IHSFSDSQFGHIFAYGENRSASRKHMVIALKELSIRGDFRTTIEYLIKLLETPAFEENKI 549
Query: 545 HTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLV 604
TGWLD I+ ++ AERP ++V+ GA+ KA +S A + +Y ++KGQ+P K +
Sbjct: 550 TTGWLDQLISNKLTAERPDTTIAVLCGAVTKAHQASEARLEEYRNGIQKGQVPSKDVLKT 609
Query: 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAE 664
V EG +Y+ R G SY L +N S+ + L DGGLL+ L+G SH VY +
Sbjct: 610 VFPVDFIYEGKRYKFTATRAGLDSYHLFINGSKCSIGVRALADGGLLVLLNGRSHNVYWK 669
Query: 665 EEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMC 724
EEAA TR+ +DG+TCLL+ ++DP++L +P KL+++ V +G H+ A P+AEVEVMKM
Sbjct: 670 EEAAATRISVDGKTCLLEQENDPTQLRTPSPGKLVKFTVENGEHVRAGQPFAEVEVMKMY 729
Query: 725 MPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGK 784
MPL++ G++Q G ++AG+++ L LDDPS V+ A+PF P +GPP + K
Sbjct: 730 MPLIAQEDGIVQLIKQPGATLEAGDILGILALDDPSRVKHAQPFTEQLPPIGPPQVVGNK 789
Query: 785 VHQRCAASLNAARMILAGYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKD 842
QR + IL G+++ + ++ L+ L PELP +W + L +R+P+
Sbjct: 790 PAQRFFLLHSILENILKGFDNQVIMNSTLKELIEVLRDPELPYSEWNAQSSALHSRMPQK 849
Query: 843 LKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHL---LSCADKERGSQERLIEPLMSL 899
L +L++ +R + S+ +FPA+ L+ + + ++ AD E + + PL+ +
Sbjct: 850 LDAQLQNIV---DR-ARSRKAEFPARQLQKTMVRFIEENVNPADAE--ILKTTLLPLVQV 903
Query: 900 VKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQA--DVIERLRLQYKKDLLKVVDIVL 957
+ +Y G ++H + L E+Y +VE+LFS D I LR ++K D+ +V I L
Sbjct: 904 INNYIEGLKAHEYKVFVGLLEQYYAVEKLFSGSKARYEDGILALREEHKDDVATIVQIAL 963
Query: 958 SHQGVKRKNKLILRLMEQLVY-PN-PAA------YRDKLIRFSALNHTNYSELALKASQL 1009
SH + KN LIL ++ +Y PN P ++ L + + + +++ LKA ++
Sbjct: 964 SHSRIGAKNDLILAILS--IYRPNQPGMANVGQYFKSILKKLTEIESRAAAKVTLKAREV 1021
Query: 1010 LEQTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAID-ERMEDLVSAPLAVEDALVG 1068
L Q L L +++ L + + +T D ++++V + V D L
Sbjct: 1022 LIQCALPSLEERLSQMELILRSSVAESQYGETGWAHREPDLGALKEVVDSKYTVFDVLPR 1081
Query: 1069 LFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIA--SWEF 1114
F H D + +E YVRR Y+ Y ++G +Q+H G A SW+F
Sbjct: 1082 FFVHKDAWVTLAALEVYVRRAYRAYSIQG---IQYHHEGEPAFLSWDF 1126
|
|
| SGD|S000005299 ACC1 "Acetyl-CoA carboxylase, biotin containing enzyme" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 2276 (806.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 528/1347 (39%), Positives = 769/1347 (57%)
Query: 18 GHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGT 77
GH G + S + +F +S GG I ILIANNG+AAVK IRS+R WAYETFG
Sbjct: 30 GHFIGLNTV-DKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGD 88
Query: 78 EKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP 137
++ + VAMATPED+ NAE+IR+ADQ++EVPGGTNNNNYANV LIV++AE VDAVW
Sbjct: 89 DRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWA 148
Query: 138 GWGHASEIPELPDTLST--KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195
GWGHASE P LP+ LS + +IF+GPP +M +LGDKI S+++AQ+A VP +PWSG+ V
Sbjct: 149 GWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGV 208
Query: 196 K---IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252
+ ++ LV++ DD+Y++ C + E+ + + +G+P MIKAS GGGGKGIR+V +
Sbjct: 209 DTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVERE 268
Query: 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI 312
++ AL+ Q E+PGSPIFIMK+A ++RHLEVQLL DQYG +L RDCSVQRRHQKI
Sbjct: 269 EDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKI 328
Query: 313 IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372
IEE P+T+A ET ++E+AA RL K V YV A TVEYLYS + G++YFLELNPRLQVEH
Sbjct: 329 IEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEH 388
Query: 373 PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQA 432
P TE ++ +NLPAAQ+ + MGIP+ +I +IR YGM S I F+F
Sbjct: 389 PTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNP-------HSASEI--DFEFKTQ 439
Query: 433 ESTR------PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIH 486
++T+ PKGHC A R+TSEDP+DGFKP+ G + EL+F+S NVW YFSV + G IH
Sbjct: 440 DATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIH 499
Query: 487 EFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHT 546
FSDSQFGH+FAFGE+R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I T
Sbjct: 500 SFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITT 559
Query: 547 GWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNS 606
GWLD I ++ AE+P L+V+ GA KA +S YI L+KGQ+ K +
Sbjct: 560 GWLDDLITHKMTAEKPDPTLAVICGAATKAFLASEEARHKYIESLQKGQVLSKDLLQTMF 619
Query: 607 QVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE 666
V EG +Y+ + + G YTL +N S+ + + L DGGLL+ + G SH +Y +EE
Sbjct: 620 PVDFIHEGKRYKFTVAKSGNDRYTLFINGSKCDIILRQLSDGGLLIAIGGKSHTIYWKEE 679
Query: 667 AAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP 726
A TRL +D T LL+ ++DP++L +P KL+++LV +G HI PYAE+EVMKM MP
Sbjct: 680 VAATRLSVDSMTTLLEVENDPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMP 739
Query: 727 LLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVH 786
L+S +G++Q G + AG+++A + LDDPS V+ A PF G P G P K
Sbjct: 740 LVSQENGIVQLLKQPGSTIVAGDIMAIMTLDDPSKVKHALPFEGMLPDFGSPVIEGTKPA 799
Query: 787 QRCAASLNAARMILAGYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLK 844
+ + ++ IL GY++ + +Q L+ L +P+LP +W+ ++ L +RLP L
Sbjct: 800 YKFKSLVSTLENILKGYDNQVIMNASLQQLIEVLRNPKLPYSEWKLHISALHSRLPAKLD 859
Query: 845 NELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCA---DKERGSQERLIEPLMSLVK 901
++E E S + FPA+ L +++ + + DK G+ ++EPL +
Sbjct: 860 EQME----ELVARSLRRGAVFPARQLSKLIDMAVKNPEYNPDKLLGA---VVEPLADIAH 912
Query: 902 SYEGGRESHARVIVQSLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSH 959
Y G E+H I EEY VE+LF+ + + ++I +LR + KDL KV VLSH
Sbjct: 913 KYSNGLEAHEHSIFVHFLEEYYEVEKLFNGPNVREENIILKLRDENPKDLDKVALTVLSH 972
Query: 960 QGVKRKNKLILRLME------QLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQT 1013
V KN LIL +++ +L A + L L +++AL+A ++L Q
Sbjct: 973 SKVSAKNNLILAILKHYQPLCKLSSKVSAIFSTPLQHIVELESKATAKVALQAREILIQG 1032
Query: 1014 KLSELRS---SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLF 1070
L ++ I L + G S PKR ++DL+ + V D L+
Sbjct: 1033 ALPSVKERTEQIEHILKSSVVKVAYGSS--NPKRSEPDLNILKDLIDSNYVVFDVLLQFL 1090
Query: 1071 DHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEF-LEEH-------IERK 1122
H D + + Y+RR Y+ Y + G +R+ I W+F L ++ K
Sbjct: 1091 THQDPVVTAAAAQVYIRRAYRAYTI-GDIRVHEGVTVPIVEWKFQLPSAAFSTFPTVKSK 1149
Query: 1123 NGPEDQTPEQPL-VEKHSERKWGAMVIIKSLQSFPDILSAALRETAH--SRNDSISKGSA 1179
G L +S+ I+ ++ D+ L ++ R+ S S G A
Sbjct: 1150 MGMNRAVSVSDLSYVANSQSSPLREGILMAVDHLDDV-DEILSQSLEVIPRHQSSSNGPA 1208
Query: 1180 QTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVI 1239
S G+ ++ V N ++ + E++ R+ ++ + K++ L +A + I
Sbjct: 1209 PDRS-GSSASLSNVA-NVCVASTEGFESEEEILVRLREILDLNKQE-----LINASIRRI 1261
Query: 1240 SCIIQRDEGRAPMRHSFHWSPEKFYYXXXXXXXXXXXXXSIYLELDKLKGYDNIQYTLSR 1299
+ + +G P ++F+ P Y + LEL +L + NI+ +
Sbjct: 1262 TFMFGFKDGSYPKYYTFN-GPN---YNENETIRHIEPALAFQLELGRLSNF-NIKPIFTD 1316
Query: 1300 DRQWHLYTVVDKPLPI-RRMFLRTLVR 1325
+R H+Y V K P+ +R F R ++R
Sbjct: 1317 NRNIHVYEAVSKTSPLDKRFFTRGIIR 1343
|
|
| UNIPROTKB|Q13085 ACACA "Acetyl-CoA carboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2269 (803.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 488/1145 (42%), Positives = 703/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 136 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ + ++ +P ++Y + V ++ + + + VGYP MIKAS G
Sbjct: 256 PTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P T+A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G D+
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG--DS---- 488
Query: 421 SVIATPFDF-DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF D A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 -----PIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A S VS+++ LE+GQ+ P
Sbjct: 604 QMNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSVSNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 664 HTLLNTVDVELIYEGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A YAE+E
Sbjct: 724 TTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G ++A++ LD+PS V++AE GS P + T
Sbjct: 784 VMKMVMTLTAVESGCIHYVKRPGAALDPGCVLAKMQLDNPSKVQQAELHTGSLPRI-QST 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 963 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1023 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1190
Query: 1121 RKNGP 1125
R N P
Sbjct: 1191 RGNIP 1195
|
|
| MGI|MGI:108451 Acaca "acetyl-Coenzyme A carboxylase alpha" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2265 (802.4 bits), Expect = 0., Sum P(4) = 0.
Identities = 488/1145 (42%), Positives = 702/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 75 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 134
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 135 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 194
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 195 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 254
Query: 186 PTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ + ++ +P D+Y + V ++ + + + VGYP MIKAS G
Sbjct: 255 PTLPWSGSGLRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEG 314
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 315 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 374
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 375 RDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 433
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G DA
Sbjct: 434 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWG--DA---- 487
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 488 -----PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 542
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 543 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 602
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+GQ+ P
Sbjct: 603 QLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPA 662
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 663 HTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 722
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A YAE+E
Sbjct: 723 TTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 782
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P + T
Sbjct: 783 VMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQI-QST 841
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 842 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDI 901
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 902 MTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 961
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 962 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1021
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1022 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1080
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1081 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1129
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1130 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1189
Query: 1121 RKNGP 1125
R N P
Sbjct: 1190 RGNIP 1194
|
|
| ZFIN|ZDB-GENE-060526-74 acaca "acetyl-Coenzyme A carboxylase alpha" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2264 (802.0 bits), Expect = 0., Sum P(5) = 0.
Identities = 482/1145 (42%), Positives = 702/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
R +M+GL G + ++ ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 76 RPSMSGLHLVKQGRDRRRIDLQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR WAYE F E+AI V M TPED++ NAE+I++AD +V VPGGTNNNNYANV+LI++
Sbjct: 136 SIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGTNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLHKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIP-----PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSG+ + + + ++ +P ++Y Q CV+ E + + + VG+P M+KAS G
Sbjct: 256 PTLPWSGTGLTVEWTENDQKKGIINVPTELYEQGCVHDVEAGLKAAEQVGFPVMVKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+ ++ L++QVQ EVPGSPIF+M++A +RHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNCAEDFPNLYRQVQAEVPGSPIFVMQLAKHARHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P T+A + + +E+ A +LAK V YV A TVEYLYS ++ +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPATIATSDVFEDMEKCAVKLAKMVGYVSAGTVEYLYSQDSS-FY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL +I +IR YGM+ G D+
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLHRIKDIRVLYGMQPWG--DS---- 488
Query: 421 SVIATPFDFDQAESTR-PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DFD +T P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 -----PIDFDGLSTTPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N I TGWLD I+ +++AERP L VV GAL+ A + VS+++ LE+GQ+ P
Sbjct: 604 QHNSIDTGWLDRLISEKMQAERPDTMLGVVSGALHVADVNFRNSVSNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG+KY + + R+ P SY + MN S +E ++H L DGG+L+ DG+S+
Sbjct: 664 HTLLNTVDVELIYEGTKYVLKVTRQSPNSYVVIMNCSSVEVDVHRLSDGGMLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R++I +TC+ + ++DPS L + + KL++Y V DG H+ A YAE+E
Sbjct: 724 TTYMKEEVDRYRIIIGNKTCVFEKENDPSVLRSPSAGKLIQYTVEDGGHVFAGQCYAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G ++ G +I +L LDDPS V++AE + G+ P +
Sbjct: 784 VMKMVMTLTASESGCIHYVKRAGAVLEPGCIIGKLQLDDPSRVQQAELYTGTLPSI-QSV 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ ++L I+ GY ++E V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRVFHSTLGHLVHIMNGYCLPEPFFSAKLKEWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P ++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPAVEKAIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + LR + K D+
Sbjct: 963 MNTQSIVQLVQKYRSGIRGHMKAVVMDLLRQYLRVEVQFQHGHYDKCVFALREENKVDMA 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLI----RFSALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1023 NVLNYIFSHAQVTKKNCLVTMLIDQLCGRDPTL-TDELMAILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q I ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCIVEFQFMLPTSHPN 1190
Query: 1121 RKNGP 1125
R N P
Sbjct: 1191 RGNIP 1195
|
|
| RGD|621248 Acaca "acetyl-CoA carboxylase alpha" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2258 (799.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 484/1141 (42%), Positives = 698/1141 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 75 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 134
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 135 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGANNNNYANVELILD 194
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 195 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 254
Query: 186 PTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ + ++ +P D+Y + V ++ + + + VGYP MIKAS G
Sbjct: 255 PTLPWSGSGLRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEG 314
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 315 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 374
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 375 RDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 433
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G DA
Sbjct: 434 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWG--DA---- 487
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 488 -----PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 542
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 543 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 602
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A + +S+++ LE+GQ+ P
Sbjct: 603 QLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVNLRNSISNFLHSLERGQVLPA 662
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 663 HTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 722
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A YAE+E
Sbjct: 723 TTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 782
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P + T
Sbjct: 783 VMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQI-QST 841
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 842 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTLRDPSLPLLELQDI 901
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 902 MTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 961
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 962 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1021
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1022 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1080
Query: 1007 SQLLEQTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDAL 1066
Q+L S L S R +F ++D + I E ++ L+ + ++ D L
Sbjct: 1081 RQVLIA---SHLPSYDVRHNQVESIFLS---AIDMYGHQFCI-ENLQKLILSETSIFDVL 1133
Query: 1067 VGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIERKNG 1124
F HS+ ++ +E YVRR Y Y + Q + ++F+ H R N
Sbjct: 1134 PNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPNRGNI 1193
Query: 1125 P 1125
P
Sbjct: 1194 P 1194
|
|
| UNIPROTKB|E2RL01 ACACA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2258 (799.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 488/1145 (42%), Positives = 702/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 136 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIP-PESC----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ E+ ++ +P ++Y + V ++ + + + VGYP MIKAS G
Sbjct: 256 PTLPWSGSGLRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G DA
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG--DA---- 488
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 -----PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+GQ+ P
Sbjct: 604 QLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L G KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 664 HTLLNTVDVELIYGGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS L + + KL++Y+V DG H+ A YAE+E
Sbjct: 724 TTYMKEEVDRYRITIGNKTCVFEKENDPSVLRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P + T
Sbjct: 784 VMKMVMTLTAAESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPRI-QST 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 963 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1023 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1190
Query: 1121 RKNGP 1125
R N P
Sbjct: 1191 RGNIP 1195
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5SWU9 | ACACA_MOUSE | 6, ., 3, ., 4, ., 1, 4 | 0.3950 | 0.9214 | 0.9053 | yes | no |
| Q13085 | ACACA_HUMAN | 6, ., 3, ., 4, ., 1, 4 | 0.3946 | 0.9214 | 0.9049 | yes | no |
| Q9TTS3 | ACACA_BOVIN | 6, ., 3, ., 4, ., 1, 4 | 0.3948 | 0.9197 | 0.9032 | yes | no |
| Q8S6N5 | ACC1_ORYSJ | 6, ., 3, ., 4, ., 1, 4 | 0.7361 | 0.9774 | 0.9933 | yes | no |
| F4I1L3 | ACC2_ARATH | 6, ., 3, ., 4, ., 1, 4 | 0.7807 | 0.9791 | 0.9579 | no | no |
| P78820 | ACAC_SCHPO | 6, ., 3, ., 4, ., 1, 4 | 0.3955 | 0.9301 | 0.9399 | yes | no |
| Q00955 | ACAC_YEAST | 6, ., 3, ., 4, ., 1, 4 | 0.3987 | 0.9223 | 0.9516 | yes | no |
| B9FK36 | ACC2_ORYSJ | 6, ., 3, ., 4, ., 1, 4 | 0.6828 | 0.9683 | 0.9587 | yes | no |
| P11497 | ACACA_RAT | 6, ., 3, ., 4, ., 1, 4 | 0.3929 | 0.9214 | 0.9053 | yes | no |
| Q38970 | ACC1_ARATH | 6, ., 3, ., 4, ., 1, 4 | 0.8034 | 0.9752 | 0.9968 | yes | no |
| P11029 | ACAC_CHICK | 6, ., 3, ., 4, ., 1, 4 | 0.3953 | 0.9231 | 0.9152 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.4 | 0.921 |
| 4th Layer | 6.4.1.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.4.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2304 | |||
| pfam08326 | 707 | pfam08326, ACC_central, Acetyl-CoA carboxylase, ce | 0.0 | |
| pfam01039 | 487 | pfam01039, Carboxyl_trans, Carboxyl transferase do | 1e-178 | |
| COG0439 | 449 | COG0439, AccC, Biotin carboxylase [Lipid metabolis | 1e-121 | |
| COG4770 | 645 | COG4770, COG4770, Acetyl/propionyl-CoA carboxylase | 2e-95 | |
| COG4799 | 526 | COG4799, COG4799, Acetyl-CoA carboxylase, carboxyl | 1e-94 | |
| PRK08591 | 451 | PRK08591, PRK08591, acetyl-CoA carboxylase biotin | 1e-90 | |
| PRK06111 | 450 | PRK06111, PRK06111, acetyl-CoA carboxylase biotin | 3e-88 | |
| PRK05586 | 447 | PRK05586, PRK05586, biotin carboxylase; Validated | 6e-87 | |
| PRK12999 | 1146 | PRK12999, PRK12999, pyruvate carboxylase; Reviewed | 5e-86 | |
| PRK08654 | 499 | PRK08654, PRK08654, pyruvate carboxylase subunit A | 1e-85 | |
| TIGR00514 | 449 | TIGR00514, accC, acetyl-CoA carboxylase, biotin ca | 3e-85 | |
| PRK12833 | 467 | PRK12833, PRK12833, acetyl-CoA carboxylase biotin | 3e-80 | |
| TIGR02712 | 1201 | TIGR02712, urea_carbox, urea carboxylase | 2e-79 | |
| COG1038 | 1149 | COG1038, PycA, Pyruvate carboxylase [Energy produc | 5e-78 | |
| PRK08462 | 445 | PRK08462, PRK08462, biotin carboxylase; Validated | 6e-77 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 6e-75 | |
| PRK07178 | 472 | PRK07178, PRK07178, pyruvate carboxylase subunit A | 3e-70 | |
| PRK08463 | 478 | PRK08463, PRK08463, acetyl-CoA carboxylase subunit | 2e-63 | |
| pfam02786 | 211 | pfam02786, CPSase_L_D2, Carbamoyl-phosphate syntha | 2e-50 | |
| pfam00289 | 108 | pfam00289, CPSase_L_chain, Carbamoyl-phosphate syn | 4e-31 | |
| pfam02785 | 107 | pfam02785, Biotin_carb_C, Biotin carboxylase C-ter | 2e-29 | |
| smart00878 | 107 | smart00878, Biotin_carb_C, Biotin carboxylase C-te | 7e-27 | |
| cd06850 | 67 | cd06850, biotinyl_domain, The biotinyl-domain or b | 8e-13 | |
| TIGR01369 | 1050 | TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth | 2e-12 | |
| PLN02735 | 1102 | PLN02735, PLN02735, carbamoyl-phosphate synthase | 6e-11 | |
| TIGR01117 | 512 | TIGR01117, mmdA, methylmalonyl-CoA decarboxylase a | 6e-11 | |
| pfam13535 | 183 | pfam13535, ATP-grasp_4, ATP-grasp domain | 9e-11 | |
| COG0458 | 400 | COG0458, CarB, Carbamoylphosphate synthase large s | 1e-10 | |
| pfam00364 | 73 | pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | 3e-10 | |
| TIGR01369 | 1050 | TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth | 8e-09 | |
| COG0511 | 140 | COG0511, AccB, Biotin carboxyl carrier protein [Li | 1e-08 | |
| PRK12767 | 326 | PRK12767, PRK12767, carbamoyl phosphate synthase-l | 1e-08 | |
| PRK12815 | 1068 | PRK12815, carB, carbamoyl phosphate synthase large | 1e-06 | |
| PRK12815 | 1068 | PRK12815, carB, carbamoyl phosphate synthase large | 7e-06 | |
| PRK05294 | 1066 | PRK05294, carB, carbamoyl phosphate synthase large | 2e-05 | |
| cd06849 | 74 | cd06849, lipoyl_domain, Lipoyl domain of the dihyd | 1e-04 | |
| pfam02655 | 159 | pfam02655, ATP-grasp_3, ATP-grasp domain | 2e-04 | |
| pfam02222 | 171 | pfam02222, ATP-grasp, ATP-grasp domain | 4e-04 | |
| PLN02820 | 569 | PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxyla | 4e-04 | |
| COG1181 | 317 | COG1181, DdlA, D-alanine-D-alanine ligase and rela | 6e-04 | |
| PRK05889 | 71 | PRK05889, PRK05889, putative acetyl-CoA carboxylas | 0.002 | |
| TIGR01205 | 315 | TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l | 0.002 | |
| COG2232 | 389 | COG2232, COG2232, Predicted ATP-dependent carbolig | 0.002 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 0.003 | |
| COG0508 | 404 | COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena | 0.004 |
| >gnl|CDD|219797 pfam08326, ACC_central, Acetyl-CoA carboxylase, central region | Back alignment and domain information |
|---|
Score = 764 bits (1975), Expect = 0.0
Identities = 280/771 (36%), Positives = 397/771 (51%), Gaps = 91/771 (11%)
Query: 755 DLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGY-EHNIEEVVQN 813
LDDPS V+KAEPF G P +GPP K HQR A LNA R ILAGY E ++ +Q
Sbjct: 1 TLDDPSKVKKAEPFTGELPRMGPPVIEGNKPHQRFRALLNALRNILAGYNEVDMNSTLQE 60
Query: 814 LLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGV 873
L+ L PELP L+WQE M+ L++RLP L+ ELES + +E FPAK LR +
Sbjct: 61 LIEVLRDPELPYLEWQEQMSALASRLPPKLEEELESLVERYESR----IASFPAKQLRKL 116
Query: 874 LEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQI 933
+E +L R ERL+ PL+SL + YEGG +SH +V+SL EEYLSVEELFS+
Sbjct: 117 IEKYLALDP---RELLERLVAPLVSLAERYEGGLKSHEHNVVKSLLEEYLSVEELFSNGR 173
Query: 934 QADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYP-----NPAAYRDKL 988
+ DVI +LR + K DL KVVDIVLSH VK KNKL+L L++QLVYP PA+ RD L
Sbjct: 174 EEDVILKLRDENKDDLSKVVDIVLSHSRVKAKNKLVLALLDQLVYPLLPSTVPASLRDAL 233
Query: 989 IRFSALNHTNYSELALKASQLLEQTKLSELR---SSIARSLSELEMFTEDGESMDTPKRK 1045
R S+LN Y+++ALKA ++L Q L L+ + + L TE K +
Sbjct: 234 SRLSSLNSRAYAKVALKAREILIQCSLPSLKERKAQLEAILR--SSVTESSYGESFSKHR 291
Query: 1046 SAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHR 1105
E ++DLV + AV D L FDHSD + +E YVRR Y+ Y +K +Q+H
Sbjct: 292 EPSLESLKDLVDSSYAVFDVLPSFFDHSDPWVSLAALEVYVRRAYRAYSIKE---LQYHE 348
Query: 1106 CG---LIASWEFL--EEHIERKNGPEDQTPEQPLV-------EKHSERKWGAMVIIKSLQ 1153
IASWEF H R NG ++ EK SE + G MV + L+
Sbjct: 349 SDGGPPIASWEFQLPSSHSSRLNGIPSESTRAASDSDLSAVVEKRSEERTGVMVALDDLE 408
Query: 1154 SFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQE 1213
+ L+AAL S GS ++ N++++A + D+ +E
Sbjct: 409 DLEETLAAALERLPDFTGAE-SAGSGSSSEPINVLNVA----------ISDTRGFGSDEE 457
Query: 1214 RINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRH 1273
I +L ILKE + L +AGV ++ I+ RDEGR P +F S E YEE+P++RH
Sbjct: 458 LIARLEAILKENK--EELRAAGVRRVTFIVGRDEGRYPKYFTFRASDE---YEEDPIIRH 512
Query: 1274 LEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK---PLPIRRMFLRTLVRQPTSN 1330
+EP L+ LEL +L +D I+ +R+R H+Y V K +R FLR ++R
Sbjct: 513 IEPALAFQLELGRLSNFD-IKPLPTRNRNIHVYEAVGKEAQSPADKRFFLRAIIRPGDLR 571
Query: 1331 DGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVK-SDHAQMYLCIL 1389
D S D R L+ ++ELE+ N++VK +D ++L +
Sbjct: 572 DDISSAEYLDSEAE--------------RLLLDILDELEVADSNSTVKRTDLNHIFLNFV 617
Query: 1390 REQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMA 1449
E + + +EE G R+ +L V + EV++ +
Sbjct: 618 PELNL--------------------DPSSVEEALAGFLERFGRRLWRLRVTQAEVRIRLR 657
Query: 1450 -YSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLH 1498
S A RV++TNV+G+ V +YRE++D K +++HS+ + G LH
Sbjct: 658 DPSTGAPVPLRVIITNVSGYVVKVELYREVKDP-KGKLIFHSIGSKQGSLH 707
|
The region featured in this family is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (pfam01039). This enzyme (EC:6.4.1.2) is involved in the synthesis of long-chain fatty acids, as it catalyzes the rate-limiting step in this process. Length = 707 |
| >gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain | Back alignment and domain information |
|---|
Score = 553 bits (1428), Expect = e-178
Identities = 191/558 (34%), Positives = 248/558 (44%), Gaps = 81/558 (14%)
Query: 1636 PEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAE 1695
PE P G+ D+ GSFG ED FF VT+ K+LP + SGA G A
Sbjct: 1 PEHPRGKLTARERIDLLLDPGSFGELEDLFFHRVTEFGR-KRLPGDGVVTGSGAIDGRAV 59
Query: 1696 EVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKE 1755
EV A W L P GF +T I + GE ++ G
Sbjct: 60 EVVAQDFTVWGGSLGPAHGFK---ITRAMELAI-----------KEGEPLIGINDSGGAR 105
Query: 1756 DGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIIL 1814
GVENL G G I GA SRA ++ VTG G GAY LG I P+ L
Sbjct: 106 IQEGVENLRGYGLIFGANSRASGVIPQISLVTGPCAGGGAYSPALGDFIIMVKGTSPMFL 165
Query: 1815 TGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGG 1874
TG + K+ G E +S G + M +GV HLT SDD + ++ I K LSY+P
Sbjct: 166 TGPDVVKKVTG-EEVTSEELGGADQHMTKSGVAHLTASDDEDALALIRKLLSYLPKASNN 224
Query: 1875 --ALPIISPLDPPDRP----VEYLPENS---CDPRAAICGFLDNNGKWIGGIFDKDSFVE 1925
+PI+ DPPDR V +P++ D R I G I D+ SF E
Sbjct: 225 MEPVPIVPTGDPPDRDVEELVSIVPDDPKRPYDVREVIAG-----------IVDEGSFFE 273
Query: 1926 TLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDS 1985
T G+A+TVVTG ARLGGIPVG+VA + + AG V F DS
Sbjct: 274 TKAGYAKTVVTGFARLGGIPVGVVANQPR--------------------VLAG-VLFIDS 312
Query: 1986 ATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYI 2045
A K A+ + D + +PL IL + GF G + GIL+ G+ ++ L P I
Sbjct: 313 ADKAARFIRDCDAFNIPLVILVDVPGFLPGTDQEYGGILKHGAKLLYALAEATVPKITVI 372
Query: 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2105
P + GGA+VV+DS+IN ++A TA+ V+ PEG +EIKFR + M
Sbjct: 373 PR--KAYGGAYVVMDSKINGADA-VFAWPTARIAVMGPEGAVEIKFRKELAAATMR---- 425
Query: 2106 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2165
DL A Q+I E+QL P Y A FA+L R AK
Sbjct: 426 -YKDLEAL---------------RAQKIAEYEEQLSPPYVAAARGFADLVIDPGRTRAKL 469
Query: 2166 VIKEVVDWDKSRSFFCRR 2183
VI + W K R F R+
Sbjct: 470 VIALALLWHKPRFFPWRK 487
|
All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule. Length = 487 |
| >gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 390 bits (1004), Expect = e-121
Identities = 172/510 (33%), Positives = 255/510 (50%), Gaps = 70/510 (13%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G AV+ IR+ R ET VA+ + D +A H+ +AD+ V +
Sbjct: 5 ILIANRGEIAVRIIRACRELGIET---------VAVYSEADA--DALHVALADEAVCIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+ ++Y N+ I+ AE T DA+ PG+G SE + + G+ F+GP A ++ +
Sbjct: 54 APSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
GDKI + + A VP +P S V EEA+A + +G
Sbjct: 114 GDKITARRLMAKAGVPVVPGS---------------------DGAVADNEEALAIAEEIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP ++KA+ GGGG+G+R V N++E+ A F+ +GE G+P +++ K RH+EVQ
Sbjct: 153 YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D +GNV L RDCS+QRRHQK+IEE P + E +K+ +AA R AK + Y GA
Sbjct: 213 VLGDGHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
TVE+LY GE+YF+E+N RLQVEHPVTE + I+L Q+ + G
Sbjct: 273 TVEFLYDS-NGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAG------------- 318
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
P Q E + +GH + R+ +EDP F P+ GK+ +
Sbjct: 319 ------------------EPLSLKQ-EDIKFRGHAIECRINAEDPLGNFLPSPGKITRYA 359
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
P V V G + + DS G V G +R AIA M L E+ I G I+TN
Sbjct: 360 PPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDG-IKTN 418
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSRIAMR 556
+ ++L D+ + T +L++ +
Sbjct: 419 IPLLQEILRDPDFLAGDLDTHFLETHLEPL 448
|
Length = 449 |
| >gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = 2e-95
Identities = 204/721 (28%), Positives = 309/721 (42%), Gaps = 91/721 (12%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
ILIAN G A + IR+ R T VA+ + D +A H+R+AD+ V
Sbjct: 2 FSKILIANRGEIACRVIRTARDLGIRT---------VAVYSDADA--DALHVRMADEAVH 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ +Y ++ I++ A T A+ PG+G SE + + G++F+GP A ++
Sbjct: 51 IGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
A+GDKI + +A A VPT+P G H I + LV I +++
Sbjct: 111 RAMGDKIAAKKLAAEAGVPTVP--GYHGPIQDAAELVAIAEEI----------------- 151
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRHL 283
GYP +IKAS GGGGKG+R V +E + + E S +FI K + RH+
Sbjct: 152 --GYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPL---ETVKKLEQAARRLAKCV 340
E+Q+ DQ+GNV L RDCS+QRRHQK+IEE P AP ET + + +AA AK V
Sbjct: 210 EIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAP---APFLTEETREAMGEAAVAAAKAV 266
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
YVGA TVE++ G +YFLE+N RLQVEHPVTE I I+L Q+ V G L
Sbjct: 267 GYVGAGTVEFIVD-ADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEKL---- 321
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
F Q + GH + R+ +EDP GF P++G
Sbjct: 322 ---------------------------PFTQDDIPL-NGHAIEARIYAEDPARGFLPSTG 353
Query: 461 KVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520
++ + P V V+ G I F D + G R A+ + L E ++
Sbjct: 354 RLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVE 413
Query: 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIA-MRVRAERPPWYLSVVGGALYKASAS 579
G I TN+ + L+ +R + TG++ I + A L+ A
Sbjct: 414 G-IATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAPAPASADALAAAALLAQPALER 472
Query: 580 SA--AMVSDYIGY-LEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTL-RMNE 635
A + G+ + + + +V + + + R L
Sbjct: 473 RAESDPWASLSGWVVTGDAAELRVLIDGEERVEVRLPAREGRERFYVDSDWDPELASAAL 532
Query: 636 SEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETP 695
S + + R GG L G AE + G + +L+A P
Sbjct: 533 SGRKRAVRVARAGGGLTLFWGGGSPRIAELDKLGGAKVAAA---------SSGELLAPMP 583
Query: 696 CKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARL 754
++ V +G + A +E MKM L +P GV+ + +AEG + G ++
Sbjct: 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEF 643
Query: 755 D 755
+
Sbjct: 644 E 644
|
Length = 645 |
| >gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 317 bits (814), Expect = 1e-94
Identities = 137/563 (24%), Positives = 213/563 (37%), Gaps = 55/563 (9%)
Query: 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLI 1681
N GMVA M E R I + G + V L +
Sbjct: 2 NAFGMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGKGKLTARERVELLLDPGSF--L 59
Query: 1682 YLAANSGAR-IGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG-----SSVIAH 1735
L A +G R G A E+ + +N + F + +G + A
Sbjct: 60 ELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKILRAQ 119
Query: 1736 EMKLESGETR-WVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIG 1794
E+ +E+G + DS G GV +L G G I +RA ++ V G G G
Sbjct: 120 ELAIENGLPVIGLNDSG-GARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGG 178
Query: 1795 AYLARLGMRCIQ-RLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN-GVVHLTVS 1852
AY L I R + LTG + + G EV + +LGG ++ A GV L
Sbjct: 179 AYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEVSAE--ELGGAQVHARKSGVADLLAE 236
Query: 1853 DDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNNG 1911
DD + I + + LSY+P + P++ D PDR E L DPR +
Sbjct: 237 DDEDAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPY------DV 290
Query: 1912 KW-IGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSH 1970
+ I + D F+E G+A+ +VTG AR+ G PVGI+A + +
Sbjct: 291 REVIARLVDDGEFLEFKAGYAKNIVTGFARIDGRPVGIIANQPR---------------- 334
Query: 1971 ERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTI 2030
G V DSA K A+ + + +PL L + GF G + GI++ G+ +
Sbjct: 335 -----HLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKL 389
Query: 2031 VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIK 2090
+ + P I + GGA+ V+ + YA TA+ V+ PEG + I
Sbjct: 390 LYAVAEATVPKITVI--TRKAYGGAYYVMGGKALGPD-FNYAWPTAEIAVMGPEGAVSIL 446
Query: 2091 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATK 2150
+R + L R +++ L +L + A E+ + A
Sbjct: 447 YRKE--LAAAERPEEREALLRKQLIAEYEEQ-------FSNPYYAAERGYIDAVIDPADT 497
Query: 2151 FAELHDTSLRMAAKGVIKEVVDW 2173
A L +A K V++ +
Sbjct: 498 RAVLGRALSALANKPVVETPLKK 520
|
Length = 526 |
| >gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Score = 302 bits (776), Expect = 1e-90
Identities = 162/516 (31%), Positives = 254/516 (49%), Gaps = 70/516 (13%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
ILIAN G A++ IR+ + E I VA+ + D +A H+++AD+ V
Sbjct: 2 FDKILIANRGEIALRIIRACK---------ELGIKTVAVHSTADR--DALHVQLADEAVC 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ + +Y N+ I+ AE+T DA+ PG+G SE + + G F+GP A ++
Sbjct: 51 IGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK+ + + A VP +P GS V EEA+A +
Sbjct: 111 RLMGDKVTAKATMKKAGVPVVP--GS-------------------DGPVDDEEEALAIAK 149
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP +IKA+ GGGG+G+R V + E+ F + E G+P +++ K RH+
Sbjct: 150 EIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q+L D +GN L RDCS+QRRHQK++EE P E +K+ +AA + AK + Y
Sbjct: 210 EIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYR 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
GA T+E+LY + GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 270 GAGTIEFLYE-KNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLS------ 322
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q + +GH + R+ +EDP F P+ GK+
Sbjct: 323 -------------------------IKQEDIVF-RGHAIECRINAEDPAKNFMPSPGKIT 356
Query: 464 ELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
P V +V +G I + DS G + GE+R AIA M L E I G I
Sbjct: 357 RYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDG-I 415
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA 559
+T + + LL+ +++ + +L+ ++A++
Sbjct: 416 KTTIPLHLRLLNDPNFQAGDYNIHYLEKKLALQEEK 451
|
Length = 451 |
| >gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 3e-88
Identities = 163/507 (32%), Positives = 251/507 (49%), Gaps = 79/507 (15%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
+LIAN G AV+ IR+ + T VA+ + D +A H+++AD+ + G
Sbjct: 5 VLIANRGEIAVRIIRTCQKLGIRT---------VAIYSEADR--DALHVKMADEAYLIGG 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+Y N++ I+E+A+ T +A+ PG+G SE + +GI+F+GP A +A +
Sbjct: 54 PRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
G KI + QAA VP +P + L EEAIA + +G
Sbjct: 114 GSKIEARRAMQAAGVPVVP--------GITTNLEDA-------------EEAIAIARQIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP M+KAS GGGG G++ V + E+ F+ + G+ ++I K RH+E+Q
Sbjct: 153 YPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPL---ETVKKLEQAARRLAKCVNYV 343
LL D +GN L R+CSVQRRHQK+IEE P +P ET K + + A + AK + Y
Sbjct: 213 LLADTHGNTVYLWERECSVQRRHQKVIEEAP---SPFLDEETRKAMGERAVQAAKAIGYT 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL-WQIPEI 402
A T+E+L E +YFLE+N RLQVEHPVTE I I+L Q+ + G L + +I
Sbjct: 270 NAGTIEFLVD-EQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSFTQDDI 328
Query: 403 RRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKV 462
+R GH + VR+ +EDP F P+ GK+
Sbjct: 329 KR---------------------------------SGHAIEVRIYAEDPKT-FFPSPGKI 354
Query: 463 QELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522
+L+ V +V++G + F D + A GE+R AI+ + L+E+++ G
Sbjct: 355 TDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG- 413
Query: 523 IRTNVDYTIDLLHASDYRENKIHTGWL 549
I+TN+ + +L ++ TG+L
Sbjct: 414 IKTNIPLLLQVLEDPVFKAGGYTTGFL 440
|
Length = 450 |
| >gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 6e-87
Identities = 158/507 (31%), Positives = 248/507 (48%), Gaps = 70/507 (13%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G AV+ IR+ R E I VA+ + D +A H+++AD+ V +
Sbjct: 5 ILIANRGEIAVRIIRACR---------EMGIETVAVYSEADK--DALHVQLADEAVCIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
++ ++Y N+Q I+ +T A+ PG+G SE + I+F+GP + ++ +
Sbjct: 54 ASSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
G+K + I A VP +P S ++ EEA+ + +G
Sbjct: 114 GNKSNAREIMIKAGVPVVPGSEGEIE---------------------NEEEALEIAKEIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRHLEVQ 286
YP M+KAS GGGG+GIR V +++E+ F + E + ++I K +H+E Q
Sbjct: 153 YPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D YGNV L RDCS+QRR+QK++EE P V E KK+ + A + AK VNY A
Sbjct: 213 ILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
T+E+L + G +YF+E+N R+QVEHP+TE I ++L Q+ + G L
Sbjct: 273 TIEFLLD-KDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKL---------- 321
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
Q E + GH + R+ +EDP +GF P GK++EL
Sbjct: 322 ---------------------SIKQ-EDIKINGHSIECRINAEDPKNGFMPCPGKIEELY 359
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
V +V SG I + DS G + +G+ R AI M L E I G + TN
Sbjct: 360 IPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEG-VNTN 418
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSRI 553
+D+ +L ++ + T +++ ++
Sbjct: 419 IDFQFIILEDEEFIKGTYDTSFIEKKL 445
|
Length = 447 |
| >gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 5e-86
Identities = 167/530 (31%), Positives = 261/530 (49%), Gaps = 100/530 (18%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
K I +L+AN G A++ R+ TE I VA+ + ED + H AD+
Sbjct: 3 KKIKKVLVANRGEIAIRIFRAA---------TELGIRTVAIYSEEDK--LSLHRFKADEA 51
Query: 106 VEVPGGTNNNN---YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGP 162
+ G + Y ++ I+ +A+ VDA+ PG+G SE PE + GI F+GP
Sbjct: 52 YLI--GEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGP 109
Query: 163 PATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEA 222
A + LGDK+ + A A VP +P S P DD+ EEA
Sbjct: 110 TAEVLRLLGDKVAARNAAIKAGVPVIPGSE-----GP-------IDDI---------EEA 148
Query: 223 IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVAS 278
+ + +GYP M+KAS GGGG+G+R V +++E+ F++ + E G+ +++ K
Sbjct: 149 LEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE 208
Query: 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP---LETVKKLEQAARR 335
RH+EVQ+L D++GNV L+ RDCSVQRRHQK++E I AP E +++ +AA +
Sbjct: 209 NPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVE---IAPAPGLSEELRERICEAAVK 265
Query: 336 LAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395
LA+ V YV A TVE+L + G +YF+E+NPR+QVEH VTE + I++ +Q+ + G
Sbjct: 266 LARAVGYVNAGTVEFLVDAD-GNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGAT 324
Query: 396 LWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGF 455
L G+ E R +G+ + R+T+EDP + F
Sbjct: 325 L----------HDLEIGIP----------------SQEDIRLRGYAIQCRITTEDPANNF 358
Query: 456 KPTSGKVQELSFKSKPNVWAYFSVKSGGGIH----------EFS---DSQFGHVFAFGES 502
P +G++ AY S G G+ E + DS + A+G +
Sbjct: 359 MPDTGRIT-----------AYRS-PGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRT 406
Query: 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
A+A M L+E +IRG ++TN+ + ++L D+R T ++D
Sbjct: 407 FEQAVARMRRALREFRIRG-VKTNIPFLENVLKHPDFRAGDYTTSFIDET 455
|
Length = 1146 |
| >gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 1e-85
Identities = 169/557 (30%), Positives = 270/557 (48%), Gaps = 80/557 (14%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G A++ +R+ R E I VA+ + D NA ++ AD+ +
Sbjct: 5 ILIANRGEIAIRVMRACR---------ELGIKTVAVYSEADK--NALFVKYADEAYPIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+ +Y N++ I+++A+ DA+ PG+G +E PE GI+F+GP + + A+
Sbjct: 54 APPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
G KI + + + A VP LP + + +D+ EEA + +G
Sbjct: 114 GSKINAKKLMKKAGVPVLPGTEEGI------------EDI---------EEAKEIAEEIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDE-VRAL--FKQVQGEVPGSP-IFIMKVASQSRHLEVQ 286
YP +IKAS GGGG G+R V++++E A+ + + G +FI K + RH+E+Q
Sbjct: 153 YPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D++GNV L R+CS+QRRHQK+IEE P + E +++ +AA + AK +NY A
Sbjct: 213 ILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
TVE+LYS G +YFLE+N RLQVEHP+TE + I++ Q+ + G L
Sbjct: 273 TVEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEEL---------- 320
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
F Q + T +GH + R+ +EDP + F P+ GK++
Sbjct: 321 ---------------------SFKQEDITI-RGHAIECRINAEDPLNDFAPSPGKIKRYR 358
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
P V V G I + DS + +G +R AIA M L E I G ++TN
Sbjct: 359 SPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG-VKTN 417
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSR--IAMRVR------AERPPWYLSVVGGALYKASA 578
+ + ++ ++ +HT +++ I ++ ER K +A
Sbjct: 418 IPFHKAVMENENFVRGNLHTHFIEEETTILEEMKRYALEEEEREKTLSEKFFPGNKKVAA 477
Query: 579 SSAAMVSDYIGYLEKGQ 595
+AA V+ YI +K
Sbjct: 478 IAAA-VNAYISSAKKDN 493
|
Length = 499 |
| >gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 3e-85
Identities = 156/509 (30%), Positives = 246/509 (48%), Gaps = 70/509 (13%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G A++ +R+ + E I VA+ + D +A H+ +AD+ V +
Sbjct: 5 ILIANRGEIALRILRACK---------ELGIKTVAVHSTADR--DALHVLLADEAVCIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+ +Y N+ I+ AE+T DA+ PG+G SE + G F+GP A S+ +
Sbjct: 54 APSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
GDK+ + + A VP +P S V EE + + +G
Sbjct: 114 GDKVSAIETMKKAGVPCVPGS---------------------DGLVEDEEENVRIAKRIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP +IKA+ GGGG+G+R V DE+ + E G+ ++I K RH+E+Q
Sbjct: 153 YPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D+YGN L RDCS+QRRHQK++EE P E +K+ AA + A + Y GA
Sbjct: 213 VLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
TVE+L + GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 273 TVEFLLD-KNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPL---------- 321
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
+ ++ V+ +GH + R+ +EDP F P+ G++
Sbjct: 322 ---------SLKQEDVVV-------------RGHAIECRINAEDPIKTFLPSPGRITRYL 359
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
P V V SG + + DS G + +G++R +AIA M L E I G I+T
Sbjct: 360 PPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDG-IKTT 418
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSRIAM 555
+ + +L +++ + +L+ ++ M
Sbjct: 419 IPFHQRILEDENFQHGGTNIHYLEKKLGM 447
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 449 |
| >gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 3e-80
Identities = 162/532 (30%), Positives = 243/532 (45%), Gaps = 71/532 (13%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
I +L+AN G AV+ IR+ R + + +A D ++ R+AD+
Sbjct: 3 SRIRKVLVANRGEIAVRIIRAAR-----------ELGMRTVAACSDADRDSLAARMADEA 51
Query: 106 VEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPAT 165
V + +Y N I+ A DA+ PG+G SE + + G+IF+GP A
Sbjct: 52 VHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQ 111
Query: 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIAS 225
++ +GDK + A+ A VPT+P S D V V + + A+
Sbjct: 112 TIRTMGDKARARRTARRAGVPTVPGS----------------DGV-----VASLDAALEV 150
Query: 226 CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSR 281
+GYP MIKA+ GGGG+GIR H+ ++ A Q E G +++ + +++R
Sbjct: 151 AARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARAR 210
Query: 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341
H+EVQ+L D V L R+CS+QRR QKI+EE P L +A RLA+ V
Sbjct: 211 HIEVQILGDGE-RVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVG 269
Query: 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPE 401
Y GA T+EYL+ GE+YF+E+N R+QVEHPVTE I I+L + + G PL
Sbjct: 270 YRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPL----- 324
Query: 402 IRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK 461
F Q +G + R+ +EDP F P G+
Sbjct: 325 --------------------------RFAQ-GDIALRGAALECRINAEDPLRDFFPNPGR 357
Query: 462 VQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521
+ L + P V + G + F DS + GE RA A+A L+E++I G
Sbjct: 358 IDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDG 417
Query: 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGAL 573
++T LL +D R + HT +L++ +A RA + VG A
Sbjct: 418 -MKTTAPLHRALLADADVRAGRFHTNFLEAWLAEW-RAALDAAASAAVGEAA 467
|
Length = 467 |
| >gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase | Back alignment and domain information |
|---|
Score = 288 bits (740), Expect = 2e-79
Identities = 154/508 (30%), Positives = 243/508 (47%), Gaps = 74/508 (14%)
Query: 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVP 109
++LIAN G AV+ IR++R I VA+ + D ++H+ AD+ V +
Sbjct: 3 TVLIANRGEIAVRIIRTLR---------RMGIRSVAVYSDADA--ASQHVLDADEAVCLG 51
Query: 110 GGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAA 169
G +Y ++ I+ A+ T A+ PG+G SE + GI+F+GP +
Sbjct: 52 GAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRK 111
Query: 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV 229
G K + +A+AA VP LP +G L++ + +EA+ + + +
Sbjct: 112 FGLKHTARELAEAAGVPLLPGTG----------LLS------------SLDEALEAAKEI 149
Query: 230 GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQ--GE--VPGSPIFIMKVASQSRHLEV 285
GYP M+K++ GGGG G++K + E+ F+ V+ GE + +F+ + +RH+EV
Sbjct: 150 GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEV 209
Query: 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGA 345
Q+ D G V AL RDCS+QRR+QK++EE P P ET + L AA RL + VNY A
Sbjct: 210 QIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSA 269
Query: 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRF 405
TVE++Y E+YFLE+N RLQVEHPVTE + ++L + + G
Sbjct: 270 GTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELP--------- 320
Query: 406 YGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQEL 465
F S P+G + RV +E+P F+P+ G + ++
Sbjct: 321 --------------------DFA-SLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDV 359
Query: 466 SFKSKPNV--WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
F V W V++G + D + G R AI + L E ++ G I
Sbjct: 360 QFPDDVRVDTW----VETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG-I 414
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLDS 551
TN+DY +L + +R ++ T L+S
Sbjct: 415 ETNLDYLRSILSSETFRSAQVSTRTLNS 442
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201 |
| >gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 283 bits (727), Expect = 5e-78
Identities = 160/529 (30%), Positives = 258/529 (48%), Gaps = 89/529 (16%)
Query: 41 SLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR 100
SL G+K I +L+AN G A++ R+ E I VA+ + ED + H
Sbjct: 1 SLLGEK-IKKVLVANRGEIAIRVFRA---------ANELGIKTVAIYSEEDR--LSLHRF 48
Query: 101 IADQFVEV-PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIF 159
AD+ + G Y ++ I+ +A+ + DA+ PG+G SE PE + GI F
Sbjct: 49 KADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITF 108
Query: 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTT 219
+GP + LGDK+ + A A VP +P + P + +
Sbjct: 109 IGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTD-----GP-------IETI--------- 147
Query: 220 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMK 275
EEA+ + GYP MIKA+ GGGG+G+R V ++ ++ F++ + E + +++ K
Sbjct: 148 EEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEK 207
Query: 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARR 335
+ +H+EVQ+L D +GNV L RDCSVQRRHQK++E P E ++ A +
Sbjct: 208 LVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVK 267
Query: 336 LAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395
LA+ + Y+ A TVE+L E G++YF+E+NPR+QVEH +TE I I++ AQ+ + G
Sbjct: 268 LARNIGYINAGTVEFLVD-EDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGAT 326
Query: 396 LWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGF 455
L T + P Q + R G+ + R+T+EDP++GF
Sbjct: 327 L----------------------HTPELGLP----QQKDIRTHGYAIQCRITTEDPENGF 360
Query: 456 KPTSGKVQELSFKSKPNVWAY-----FSVK-------SGGGIHEFSDSQFGHVFAFGESR 503
P +G++ AY F V+ +G I + DS V +G +
Sbjct: 361 IPDTGRIT-----------AYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTF 409
Query: 504 ALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
AI M+ L+E +IRG ++TN+ + +L+ D+R + T ++D+
Sbjct: 410 EEAIRKMIRALREFRIRG-VKTNIPFLEAVLNHPDFRSGRYTTSFIDTT 457
|
Length = 1149 |
| >gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 6e-77
Identities = 155/510 (30%), Positives = 255/510 (50%), Gaps = 72/510 (14%)
Query: 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ 104
KK I ILIAN G A++ IR+I+ ++AI + + A + A +++ AD
Sbjct: 1 KKEIKRILIANRGEIALRAIRTIQEMG------KEAIAIYSTADKD-----ALYLKYADA 49
Query: 105 FVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPA 164
+ + G ++ +Y N+ I+ AE+ DA++PG+G SE + S I F+GP
Sbjct: 50 KICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSV 109
Query: 165 TSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIA 224
MA + DK + + + A VP +P S +K + EEA
Sbjct: 110 EVMALMSDKSKAKEVMKRAGVPVIPGSDGALK---------------------SYEEAKK 148
Query: 225 SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQS 280
+ +GYP ++KA+ GGGG+G+R V ++ ++ L+ + E + +++ K +
Sbjct: 149 IAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNP 208
Query: 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV 340
RH+EVQ+L D++GNV + RDCS+QRRHQK+IEE P V +T ++L + A + AK +
Sbjct: 209 RHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAI 268
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
Y GA T E+L ++YF+E+N RLQVEH V+E ++ ++L + + G L
Sbjct: 269 GYEGAGTFEFLLD-SNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEEL---- 323
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
Q ES + KGH + R+T+EDP F P+ G
Sbjct: 324 ----------------------------PSQ-ESIKLKGHAIECRITAEDPKK-FYPSPG 353
Query: 461 KVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520
K+ + NV +G + + DS G + +GE R AIA M LKE ++
Sbjct: 354 KITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVE 413
Query: 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
G I+T + + ++++ +D+ NK T +L+
Sbjct: 414 G-IKTTIPFHLEMMENADFINNKYDTKYLE 442
|
Length = 445 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 6e-75
Identities = 171/518 (33%), Positives = 263/518 (50%), Gaps = 84/518 (16%)
Query: 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD---QFV 106
IL+AN G A++ R+ E I VA+ + ED + H + AD Q
Sbjct: 1 KILVANRGEIAIRVFRA---------ANELGIRTVAIYSEEDKL--SLHRQKADESYQVG 49
Query: 107 EVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166
E P Y ++ I+ +A++ VDA+ PG+G SE E D + GIIF+GP A
Sbjct: 50 EGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEV 109
Query: 167 MAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC 226
M LGDK+ + +A A VP +P + PPE T EE +
Sbjct: 110 MDQLGDKVAARNLAIKAGVPVVPGTDG----PPE-----------------TMEEVLDFA 148
Query: 227 QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRH 282
+GYP +IKASWGGGG+G+R V ++ +V F++ + E + +++ K+ + RH
Sbjct: 149 AAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRH 208
Query: 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342
+EVQLL D++GNV L RDCSVQRRHQK++E P E ++ + A +LAK VNY
Sbjct: 209 IEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNY 268
Query: 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQ--VAVGMGIPLWQIP 400
+ A TVE+L G++YF+E+NPR+QVEH VTE I I++ AQ +A G +P Q+
Sbjct: 269 INAGTVEFLVD-NDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLPTPQL- 326
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
GV +Q E R G+ + RVT+EDP + F+P +G
Sbjct: 327 -----------GV---------------PNQ-EDIRTNGYAIQCRVTTEDPANNFQPDTG 359
Query: 461 KVQELSFKSKPNVWAYFSVKSGGG-------IHEFSDSQFGHVFAFGESRALAIANMVLG 513
+++ +++S F ++ GG I + DS V A+ + A A M
Sbjct: 360 RIE--AYRSAGG----FGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRA 413
Query: 514 LKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDS 551
L+E +IRG ++TN+ + ++L + + T ++D+
Sbjct: 414 LREFRIRG-VKTNIPFLENVLGHPKFLDGSYDTRFIDT 450
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 3e-70
Identities = 158/539 (29%), Positives = 254/539 (47%), Gaps = 78/539 (14%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
I ILIAN G AV+ +R+ E I VA+ + D +A H++ AD+
Sbjct: 2 IKKILIANRGEIAVRIVRACA---------EMGIRSVAIYSEADR--HALHVKRADEAYS 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G Y N + +V +A T DA+ PG+G SE EL + + +GI F+GP A +
Sbjct: 51 I-GADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK + A VP P S ++ +EA+A +
Sbjct: 110 RRMGDKTEARRAMIKAGVPVTPGSEGNLA---------------------DLDEALAEAE 148
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP M+KA+ GGGG+GIR+ ++ +E+ F +V E GS +F+ K +H+
Sbjct: 149 RIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHI 208
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP---ITVAPLETVKKLEQAARRLAKCV 340
EVQ+L D +GNV L RDCS+QRR+QK+IE P +T + L A R AK V
Sbjct: 209 EVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDL---AVRAAKAV 265
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
Y A TVE+L + GE YF+E+N R+QVEH +TE I I++ Q+ + G+PL
Sbjct: 266 GYENAGTVEFLLDAD-GEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPL---- 320
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
+ Q E + +G + R+ +EDP + F P+ G
Sbjct: 321 ---------------------------SYKQ-EDIQHRGFALQFRINAEDPKNDFLPSFG 352
Query: 461 KVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520
K+ P V ++ +G I + DS + + + A+ L +++++
Sbjct: 353 KITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQ 412
Query: 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM-RVRAERPPWYLSVVGGALYKASA 578
G ++T + Y ++L ++R + +T +++S + +R P L+ A A A
Sbjct: 413 G-VKTTIPYYQEILRNPEFRSGQFNTSFVESHPELTNYSIKRKPEELAAAIAAAIAAHA 470
|
Length = 472 |
| >gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 225 bits (574), Expect = 2e-63
Identities = 153/510 (30%), Positives = 240/510 (47%), Gaps = 70/510 (13%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
IH ILIAN G AV+ IR+ R ++ VA+ T D H++IAD+
Sbjct: 2 IHKILIANRGEIAVRVIRACRDLHIKS---------VAIYTEPDR--ECLHVKIADEAYR 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G Y +V+ IVE+A+ DA+ PG+G SE E + GIIF+GP + +
Sbjct: 51 I-GTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+G+K + + + +P +P G+ K+ ES +++ A +
Sbjct: 110 RKMGNKNIARYLMKKNGIPIVP--GTE-KLNSESM-----EEIKIFA------------R 149
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG----SPIFIMKVASQSRHL 283
+GYP ++KAS GGGG+GIR VH ++++ F+ + E +F+ K RH+
Sbjct: 150 KIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E Q+L D YGN+ L RDCS+QRRHQK+IE P K + A AK V Y
Sbjct: 210 EFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYT 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A T+E+L + +YF+E+N R+QVEH VTE I I+L Q+ + G EI
Sbjct: 270 NAGTIEFLLD-DYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG-------EI- 320
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
D +Q++ +P+G + R+T+E+ F P+ GK+
Sbjct: 321 -----------------------LDLEQSD-IKPRGFAIEARITAENVWKNFIPSPGKIT 356
Query: 464 ELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
E P+V + I + DS + S LA+ + LKE I G I
Sbjct: 357 EYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDG-I 415
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
RT + + I + ++R T ++++ +
Sbjct: 416 RTTIPFLIAITKTREFRRGYFDTSYIETHM 445
|
Length = 478 |
| >gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-50
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 25/229 (10%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK+ + A VPT+P + V+ T EEA+A+ + +GY
Sbjct: 1 DKVLFKAAMKEAGVPTVPGTAGPVE---------------------TEEEALAAAKEIGY 39
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSP----IFIMKVASQSRHLEVQL 287
P +IKA++GGGG G+ N++E+ LF E P + + + K +H+E Q+
Sbjct: 40 PVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQV 99
Query: 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347
L D +GN + +R+CS QRR QK IE P E + L +AA ++A+ + YVGA T
Sbjct: 100 LRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGT 159
Query: 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
VE+ +GEYYF+E+N RLQVEH + E +L + +G PL
Sbjct: 160 VEFALDPFSGEYYFIEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPL 208
|
Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold. Length = 211 |
| >gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain, N-terminal domain | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-31
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
I +L+AN G AV+ IR++R ET VA+ + D + H+R+AD+
Sbjct: 1 IKKVLVANRGEIAVRIIRALRELGIET---------VAVNSNPDT--VSTHVRLADEAYF 49
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166
+ G + +Y N++ I+++AE DA+ PG+G SE E + GI F+GP +
Sbjct: 50 LGPGPASESYLNIERILDIAEKEGADAIHPGYGFLSENAEFAEACEEAGITFIGPSPEA 108
|
Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. Length = 108 |
| >gnl|CDD|202395 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-29
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESR 503
R+ +EDP +GF P+ GK+ F P V V G + + DS + G R
Sbjct: 2 ARIYAEDPANGFLPSPGKITRYRFPGGPGVRVDSGVYEGDEVSPYYDSMIAKLIVHGPDR 61
Query: 504 ALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
AIA + L E +I G ++TN+ + +L D+R ++ TG+L+
Sbjct: 62 EEAIARLRRALAETRIEG-VKTNIPFLRAILEHPDFRAGEVDTGFLE 107
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyzes the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. Length = 107 |
| >gnl|CDD|214878 smart00878, Biotin_carb_C, Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-27
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE--FSDSQFGHVFAFGE 501
R+ +EDP +GF P+ G++ F P V G + DS + +GE
Sbjct: 2 CRINAEDPANGFLPSPGRITRYRFPGGPGV--RVDSGVYEGYEVPPYYDSMIAKLIVWGE 59
Query: 502 SRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
R AIA + L E +IRG ++TN+ + LL D+R + TG+L+
Sbjct: 60 DREEAIARLRRALDEFRIRG-VKTNIPFLRALLRHPDFRAGDVDTGFLE 107
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. Length = 107 |
| >gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 8e-13
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAG 748
+ A P +++ LV +G ++A P A +E MKM + +P +GV+ + + EG ++AG
Sbjct: 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAG 61
Query: 749 ELIARL 754
+L+ +
Sbjct: 62 QLLVVI 67
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67 |
| >gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-12
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
+ EEA+ +GYP +++ S+ GG+ + V+N++E+R ++ P P+ I K
Sbjct: 690 ATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDK 749
Query: 276 VASQSRHLEVQLLCDQYGNV-----------AALHSRDCSVQRRHQKIIEEGPITVAPLE 324
+ ++V + D V A +HS D + Q + E
Sbjct: 750 YLEDAVEVDVDAVSDG-EEVLIPGIMEHIEEAGVHSGDSTCVLPPQTL---------SAE 799
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384
V +++ R++AK +N G +++ GE Y +E+NPR P + L
Sbjct: 800 IVDRIKDIVRKIAKELNVKGLMNIQFAVK--DGEVYVIEVNPRASRTVPFVSKATGVPLI 857
Query: 385 AAQVAVGMGIPLWQIPEIRRF 405
V +G L ++ +
Sbjct: 858 KLATRVMLGKKLEELGVGKEK 878
|
Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050 |
| >gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-11
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 218 TTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE-VRALFKQVQGEVPGSPIFIMKV 276
+ +A+A + +GYP +++ S+ GG+ + V++DD+ L V+ + P P+ + K
Sbjct: 725 SEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVD-PERPVLVDKY 783
Query: 277 ASQSRHLEVQLLCDQYGNV-----------AALHSRD--CSVQRRHQKIIEEGPITVAPL 323
S + ++V L D GNV A +HS D CS+ P P
Sbjct: 784 LSDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSL-----------PTQTIPS 832
Query: 324 ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
+ + +LAK +N G +Y + GE Y +E NPR
Sbjct: 833 SCLATIRDWTTKLAKRLNVCGLMNCQYAITPS-GEVYIIEANPR 875
|
Length = 1102 |
| >gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-11
Identities = 87/372 (23%), Positives = 148/372 (39%), Gaps = 80/372 (21%)
Query: 1812 IILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPP 1870
+ +TG + + G EV + QLGG +GV H DD + I I + LS++P
Sbjct: 188 MFITGPQVIKTVTGEEV--TAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245
Query: 1871 HIGGALPIISPLDPPDRPVE----YLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVET 1926
+ P++ D P R LP+N P + I I D ++E
Sbjct: 246 NNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPY--------DMRDVITAIVDNGDYLEV 297
Query: 1927 LEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSA 1986
+A ++T AR+ G VGI+A + + + G LD DS+
Sbjct: 298 QPYYAPNIITCFARINGQSVGIIANQPKVM-------AGCLDI--------------DSS 336
Query: 1987 TKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP 2046
K A+ + + +P+ + GF G + GI++ G+ ++ P I
Sbjct: 337 DKIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIIT 396
Query: 2047 MMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2105
A GGA++ + S+ + +D + YA TA+ V+ P G I FR K+
Sbjct: 397 RKA--YGGAYLAMCSKHLGADQV--YAWPTAEIAVMGPAGAANIIFR-KD---------- 441
Query: 2106 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2165
++EAK+ A KQ + Y +FA + AA+G
Sbjct: 442 --------IKEAKDP-------------AATRKQKIAEYR---EEFA----NPYKAAARG 473
Query: 2166 VIKEVVDWDKSR 2177
+ +V++ ++R
Sbjct: 474 YVDDVIEPKQTR 485
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds]. Length = 512 |
| >gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268
V V E+ A+ + +G+P ++K G G G+ +V + E+ A + EV
Sbjct: 18 PVPPFFLVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSAAELEAALAALAAEVED 77
Query: 269 SPIFIMKVASQSR------HLEVQLLCDQYGNVAAL----HSRDCSVQRRHQKIIEEGPI 318
+ +++ + H++ L+ D G + L + + +E G +
Sbjct: 78 TREYLV----EEYIDGDEYHVDG-LVDD--GELVFLGVSRYLGPPPP--DFSEGVELGSV 128
Query: 319 TVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGEYYFLELNPRL 368
+ + L + A R+ K + G +E+ + G LE+NPR
Sbjct: 129 SPGEDPLPEALRELAERVLKALGLRNGVFHLEFFLT-PDGRPVLLEINPRP 178
|
This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 183 |
| >gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
++ EEA +GYP ++K S+G GG G +N++E+ + ++ P + I +
Sbjct: 136 AHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEE 195
Query: 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEG-PITVAPLETVKKLEQAAR 334
+ E +++ D N C+++ + G ITVAP +T+ E
Sbjct: 196 SIIGWKEFEYEVVRDGKDNCIV----VCNMENLDPMGVHTGDSITVAPAQTLTDKEYQML 251
Query: 335 RLAKC-----VNYVGAATVEYLYSMETGEYYFLELNPR 367
R A + G +++ GE Y +E+NPR
Sbjct: 252 RDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPR 289
|
Length = 400 |
| >gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQA 744
+ V E +LV G + A EVE MKM M + +P +GV+ + + EG
Sbjct: 7 MIGESVKEGT---AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63
Query: 745 MQAGELIARL 754
++ G+ +A++
Sbjct: 64 VEVGDPLAKI 73
|
This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73 |
| >gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-09
Identities = 39/171 (22%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW--GGGGKGIRKVHNDDEVRALFKQVQ 263
I + V ++ EEA+A+ + +GYP +++ ++ GG G GI +N +E++ + ++
Sbjct: 138 IGEPVPESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGI--AYNREELKEIAERAL 195
Query: 264 GEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEG-PITVAP 322
P + + + K + + +E +++ D N + C+++ + G I VAP
Sbjct: 196 SASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITV----CNMENFDPMGVHTGDSIVVAP 251
Query: 323 LETV-----KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368
+T+ + L A+ ++ + + G V++ + ++G YY +E+NPR+
Sbjct: 252 SQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRV 302
|
Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050 |
| >gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 9/130 (6%)
Query: 628 SYTLRMNESEIEAEIHT--LRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDH 685
+ +++ E E+ T ++D ++ +S A + AA
Sbjct: 15 EFEVKVEEGEVRLSRKTPVVQDVPAPAPIEASSPSAAAAQPAASAPAPAPAAAA------ 68
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ-FKMAEGQA 744
+++ + + + V G + A A +E MKM + +PA GV++ + G
Sbjct: 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP 128
Query: 745 MQAGELIARL 754
++ G+ +A +
Sbjct: 129 VEYGDPLAVI 138
|
Length = 140 |
| >gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 64/287 (22%), Positives = 111/287 (38%), Gaps = 59/287 (20%)
Query: 91 DMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP- 149
D+ A + AD+F VP T+ N Y + ++++ + ++D + P + PELP
Sbjct: 32 DISELAPALYFADKFYVVPKVTDPN-YIDR--LLDICKKEKIDLLIPL----ID-PELPL 83
Query: 150 -----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204
D G+ L + DK + + +PT P+S L
Sbjct: 84 LAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPT-----------PKSYLP 132
Query: 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG 264
+D + A+A ++ +P +K G G+ KV++ +E+ L + V
Sbjct: 133 ESLEDF---------KAALAKGEL-QFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPN 182
Query: 265 EVPGSPIFIMKVASQSRHLE--VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP 322
+ I + E V +LCD G V V R+ ++
Sbjct: 183 ------LIIQEFIEGQ---EYTVDVLCDLNGEVI------SIVPRKRIEVRAGETSKG-- 225
Query: 323 LETVK--KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
TVK +L + A RLA+ + G ++ + GE Y E+NPR
Sbjct: 226 -VTVKDPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLFEINPR 269
|
Length = 326 |
| >gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-06
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 26/162 (16%)
Query: 217 YTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276
EEA A + +GYP +I+ S+ GG+G+ V+++ + A + PI I +
Sbjct: 692 TDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLA--ENASQLYPILIDQF 749
Query: 277 ASQSRHLEVQLLCDQYGNV-----------AALHSRDCSVQRRHQKIIEEGPITVAPLET 325
+ EV + D +V A +HS D I P +++ E
Sbjct: 750 ID-GKEYEVDAISDGE-DVTIPGIIEHIEQAGVHSGD--------SIAVLPPQSLSE-EQ 798
Query: 326 VKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
+K+ A ++AK + + G ++++ + E Y LE+NPR
Sbjct: 799 QEKIRDYAIKIAKKLGFRGIMNIQFV--LANDEIYVLEVNPR 838
|
Length = 1068 |
| >gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-06
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 30/169 (17%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
V + EEA+A + +G+P +++ ++ GG G N +E+ LFKQ P + +
Sbjct: 149 VTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEE 208
Query: 276 VASQSRHLEVQLLCDQYGNVA-----------ALHSRDCSVQRRHQKIIEEGPITVAPLE 324
+ + +E +++ D+ GN +H+ D I VAP +
Sbjct: 209 SIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTGD--------------SIVVAPSQ 254
Query: 325 T-----VKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368
T + L A+ ++ + VG +++ ++ +YY +E+NPR+
Sbjct: 255 TLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRV 303
|
Length = 1068 |
| >gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-05
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 25/164 (15%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
+ EEA+ + +GYP +++ S+ GG+ + V++++E+ ++ P P+ I K
Sbjct: 690 ATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDK 749
Query: 276 VASQSRHLEVQLLCD----QYGNV------AALHSRD--CSVQRRHQKIIEEGPITVAPL 323
+ ++V +CD G + A +HS D CS+ P T++
Sbjct: 750 FLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSL----------PPQTLSE- 798
Query: 324 ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
E ++++ + ++LA +N VG V++ E Y +E+NPR
Sbjct: 799 EIIEEIREYTKKLALELNVVGLMNVQFAVK--DDEVYVIEVNPR 840
|
Length = 1066 |
| >gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
T ++ +LV +G ++ AEVE K + + +PA+GVL + + EG + G++IA
Sbjct: 13 TEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIA 72
Query: 753 RL 754
+
Sbjct: 73 VI 74
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74 |
| >gnl|CDD|217166 pfam02655, ATP-grasp_3, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 224 ASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ--VQGEVPGSPIFIMKVASQSR 281
++K G GG+G+R V N E + +Q + G P+ + ++ +
Sbjct: 24 EEPTEEEKKYIVKPRDGCGGEGVRFVENGREDEEFIENVIIQEFIEGEPLSVSVLSDGEK 83
Query: 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341
L + + Q + + G +T + E ++LE+ A + + +
Sbjct: 84 VLPL-SVNRQL------------IDNAGSGFVYAGNVTPSRTELKEELEELAEEVVEALP 130
Query: 342 ----YVGAATVEYLYSMETGEYYFLELNPRLQ 369
YVG V+ + + G Y +E+NPR+
Sbjct: 131 GLNGYVG---VDLVLT--DGGPYVIEVNPRIT 157
|
No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman). Length = 159 |
| >gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 20/155 (12%)
Query: 220 EEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278
EE I + Q +GYP ++KA GG GKG V ++ ++ ++++ G P+ + +
Sbjct: 18 EELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEELGGG----PVIVEEFVP 73
Query: 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK--IIEEGPITVAPLETVKKLEQAA--- 333
+ L V ++ G A Q+ I E +VAP + A
Sbjct: 74 FDKELSVLVVRSVDGETAF-----YPPVETIQEDGICRE---SVAPARVPDSQQAKAQEI 125
Query: 334 -RRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
+++ + VG VE L+ + G+ EL PR
Sbjct: 126 AKKIVDELGGVGIFGVE-LFVLPDGDLLVNELAPR 159
|
This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 171 |
| >gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-04
Identities = 70/270 (25%), Positives = 102/270 (37%), Gaps = 55/270 (20%)
Query: 1786 VTGRTVGIGAYLARLGMRC-IQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI-MAT 1843
V G GAY+ + I + + I L G + G EV S LGG +
Sbjct: 212 VLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEV--SAEDLGGADVHCKV 269
Query: 1844 NGVVHLTVSDDLEGIS---AILKWLSYVPPHIGGALPIISPLDP---PDRPVEYL----- 1892
+GV D+L ++ I+K L ++ G + S P V+ L
Sbjct: 270 SGVSDHFAQDELHALAIGRNIVKNL-HLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVP 328
Query: 1893 --PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVA 1950
+ S D R+ I +D G FD E + + T+VTG AR+ G PVGI+
Sbjct: 329 ADHKQSFDVRSVIARIVD------GSEFD-----EFKKNYGTTLVTGFARIYGQPVGII- 376
Query: 1951 VETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWR 2010
+ G L F +SA K A + + +PL L N
Sbjct: 377 -----------GNNGIL--------------FTESALKGAHFIELCAQRGIPLLFLQNIT 411
Query: 2011 GFSGGQRDLFEGILQAGSTIVENLRTYKQP 2040
GF G R GI +AG+ +V + K P
Sbjct: 412 GFMVGSRSEASGIAKAGAKMVMAVACAKVP 441
|
Length = 569 |
| >gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-04
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 39/225 (17%)
Query: 156 GIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQAC 215
GI ++G + A DKI + + +A +P P+ V + D Y
Sbjct: 87 GIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPY-------------VALTRDEYSSVI 133
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE----VRALFKQVQGEVPGSPI 271
V EE +G+P +K + G G V+ + + + FK +
Sbjct: 134 VEEVEEG------LGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDV 181
Query: 272 FIMKVASQSRHLEVQLLCDQYGNVAA-LHSRDCSVQR---RHQKIIEEGPIT---VAPL- 323
+ R +EV +L + Y A L + K + G A L
Sbjct: 182 LREQ-GITGREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLT 240
Query: 324 -ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
E +++++ A R K + +G A V++ + GE+ LE+N
Sbjct: 241 DEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTN 285
|
Length = 317 |
| >gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAGEL 750
AE +L +V++G I +E MKM +P+L+ +G V + ++ G +QAG+L
Sbjct: 7 AEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDL 66
Query: 751 IA 752
IA
Sbjct: 67 IA 68
|
Length = 71 |
| >gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 40/223 (17%)
Query: 156 GIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQAC 215
GI + G + A DK+ + L+ +A +PT + D++ +
Sbjct: 89 GIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNR-------ASADELECEQV 141
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE----VRALFKQVQGEVPGSPI 271
+ +G+P ++K + G G+ KV +++E + F+ EV
Sbjct: 142 A----------EPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-YDEEV----- 185
Query: 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR----HQKIIEEGPITV--APL-- 323
+++ + R LEV +L + A K ++ V APL
Sbjct: 186 -LVEQFIKGRELEVSILGN---EEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDE 241
Query: 324 ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366
E +K+++ A + K + G A V++ E GE Y E+N
Sbjct: 242 ELEEKIKELALKAYKALGCRGLARVDFFLD-EEGEIYLNEINT 283
|
This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315 |
| >gnl|CDD|225141 COG2232, COG2232, Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 218 TTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA 277
+E+ I + ++K G GG + V D+E Q + G P+ + ++
Sbjct: 137 PSEKKIEPLEEGEKTLILKPVSGAGGL-VELVKFDEEDPPPGFIFQEFIEGRPVSVSFIS 195
Query: 278 SQSRHLEV----QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAA 333
+ S L + Q++ G + + +G +T P E V++ E+ A
Sbjct: 196 NGSDALTLAVNDQIIDGLRGEYSQF--------------VYKGNLTPFPYEEVEEAERLA 241
Query: 334 RRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393
L + + VG+ V+++ + Y +E+NPR+Q E + INL + G
Sbjct: 242 EELVEELGLVGSNGVDFV--LNDKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAFDG 299
Query: 394 IPLWQIPEIRRFY 406
L + P+ R +
Sbjct: 300 -ELPERPKPRGYA 311
|
Length = 389 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.003
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQ 743
+P+ + A P ++ VS G ++ P +E MKM + +P G + + + G+
Sbjct: 1072 GNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE 1131
Query: 744 AMQAGELIARLD 755
+ A +L+ L+
Sbjct: 1132 QIDAKDLLLVLE 1143
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.004
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ-FKMAEGQAMQAGELIARLD 755
++ +L G + EVE K M + +P +GVL + EG + G +IAR++
Sbjct: 18 TIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77
Query: 756 LDDPSAVRKAEP 767
+ A AE
Sbjct: 78 EEGADAPAAAEA 89
|
Length = 404 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2304 | |||
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 100.0 | |
| PF08326 | 708 | ACC_central: Acetyl-CoA carboxylase, central regio | 100.0 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 100.0 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 100.0 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 100.0 | |
| KOG0369 | 1176 | consensus Pyruvate carboxylase [Energy production | 100.0 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 100.0 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 100.0 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 100.0 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 100.0 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 100.0 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 100.0 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 100.0 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 100.0 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 100.0 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 100.0 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 100.0 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 100.0 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 100.0 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 100.0 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 100.0 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 100.0 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 100.0 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 100.0 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 100.0 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 99.98 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 99.97 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 99.97 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 99.97 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 99.96 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 99.96 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 99.96 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 99.96 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 99.95 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 99.95 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 99.95 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 99.94 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 99.94 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 99.94 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 99.94 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.94 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.94 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 99.93 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 99.93 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 99.93 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 99.92 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 99.92 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 99.92 | |
| PF02785 | 107 | Biotin_carb_C: Biotin carboxylase C-terminal domai | 99.91 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 99.91 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.91 | |
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 99.91 | |
| smart00878 | 107 | Biotin_carb_C Biotin carboxylase C-terminal domain | 99.91 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 99.9 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.9 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 99.89 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 99.89 | |
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 99.88 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 99.88 | |
| KOG0237 | 788 | consensus Glycinamide ribonucleotide synthetase (G | 99.86 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.85 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.85 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.84 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 99.83 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.83 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 99.83 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 99.82 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 99.82 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 99.82 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.81 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 99.78 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.78 | |
| PRK05641 | 153 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.77 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 99.75 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 99.73 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 99.72 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 99.71 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 99.67 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 99.66 | |
| COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabo | 99.65 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 99.64 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.61 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 99.59 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.57 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 99.57 | |
| PRK06549 | 130 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.56 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 99.56 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.54 | |
| PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.51 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 99.5 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 99.46 | |
| PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.44 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 99.44 | |
| PF00364 | 74 | Biotin_lipoyl: Biotin-requiring enzyme; InterPro: | 99.43 | |
| PRK06748 | 83 | hypothetical protein; Validated | 99.42 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.39 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 99.39 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.39 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 99.38 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 99.36 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.35 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 99.34 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.33 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 99.32 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 99.31 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 99.31 | |
| PRK07051 | 80 | hypothetical protein; Validated | 99.28 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 99.27 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.27 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.26 | |
| TIGR00531 | 156 | BCCP acetyl-CoA carboxylase, biotin carboxyl carri | 99.24 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 99.22 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.22 | |
| PLN02983 | 274 | biotin carboxyl carrier protein of acetyl-CoA carb | 99.2 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 99.2 | |
| PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.15 | |
| cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carb | 99.11 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.07 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 99.07 | |
| COG1759 | 361 | 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu | 99.02 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 98.99 | |
| PLN02226 | 463 | 2-oxoglutarate dehydrogenase E2 component | 98.92 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 98.9 | |
| cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar | 98.9 | |
| PTZ00144 | 418 | dihydrolipoamide succinyltransferase; Provisional | 98.88 | |
| PRK05704 | 407 | dihydrolipoamide succinyltransferase; Validated | 98.83 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 98.73 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 98.71 | |
| COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex | 98.71 | |
| TIGR01347 | 403 | sucB 2-oxoglutarate dehydrogenase complex dihydrol | 98.7 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 98.66 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.58 | |
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 98.55 | |
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 98.55 | |
| PLN02528 | 416 | 2-oxoisovalerate dehydrogenase E2 component | 98.54 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 98.46 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 98.44 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 98.43 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 98.38 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 98.32 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 98.29 | |
| cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl a | 98.28 | |
| PRK11856 | 411 | branched-chain alpha-keto acid dehydrogenase subun | 98.25 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 98.18 | |
| TIGR01349 | 435 | PDHac_trf_mito pyruvate dehydrogenase complex dihy | 98.13 | |
| KOG0559 | 457 | consensus Dihydrolipoamide succinyltransferase (2- | 98.11 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 98.1 | |
| PLN02744 | 539 | dihydrolipoyllysine-residue acetyltransferase comp | 98.05 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 97.94 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 97.87 | |
| PF13549 | 222 | ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. | 97.84 | |
| PRK05641 | 153 | putative acetyl-CoA carboxylase biotin carboxyl ca | 97.83 | |
| KOG0557 | 470 | consensus Dihydrolipoamide acetyltransferase [Ener | 97.78 | |
| PLN00124 | 422 | succinyl-CoA ligase [GDP-forming] subunit beta; Pr | 97.74 | |
| PF08442 | 202 | ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 | 97.74 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 97.66 | |
| PRK13380 | 144 | glycine cleavage system protein H; Provisional | 97.66 | |
| PLN02235 | 423 | ATP citrate (pro-S)-lyase | 97.55 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 97.55 | |
| cd06848 | 96 | GCS_H Glycine cleavage H-protein. Glycine cleavage | 97.37 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 97.37 | |
| TIGR00998 | 334 | 8a0101 efflux pump membrane protein (multidrug res | 97.36 | |
| PRK09783 | 409 | copper/silver efflux system membrane fusion protei | 97.32 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 97.31 | |
| COG0045 | 387 | SucC Succinyl-CoA synthetase, beta subunit [Energy | 97.3 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 97.27 | |
| TIGR03077 | 110 | not_gcvH glycine cleavage protein H-like protein, | 97.26 | |
| PF03255 | 145 | ACCA: Acetyl co-enzyme A carboxylase carboxyltrans | 97.25 | |
| PRK10476 | 346 | multidrug resistance protein MdtN; Provisional | 97.24 | |
| PRK01202 | 127 | glycine cleavage system protein H; Provisional | 97.19 | |
| TIGR01730 | 322 | RND_mfp RND family efflux transporter, MFP subunit | 97.18 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 97.1 | |
| PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisi | 97.09 | |
| TIGR03309 | 256 | matur_yqeB selenium-dependent molybdenum hydroxyla | 97.07 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 97.07 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 97.05 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 96.96 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 96.95 | |
| PRK03598 | 331 | putative efflux pump membrane fusion protein; Prov | 96.94 | |
| KOG0558 | 474 | consensus Dihydrolipoamide transacylase (alpha-ket | 96.92 | |
| PRK00624 | 114 | glycine cleavage system protein H; Provisional | 96.9 | |
| PRK15136 | 390 | multidrug efflux system protein EmrA; Provisional | 96.9 | |
| TIGR00527 | 127 | gcvH glycine cleavage system H protein. The genome | 96.8 | |
| PRK09578 | 385 | periplasmic multidrug efflux lipoprotein precursor | 96.67 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 96.67 | |
| PRK15030 | 397 | multidrug efflux system transporter AcrA; Provisio | 96.65 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 96.62 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 96.62 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 96.62 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 96.45 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 96.43 | |
| PRK11556 | 415 | multidrug efflux system subunit MdtA; Provisional | 96.4 | |
| PRK11578 | 370 | macrolide transporter subunit MacA; Provisional | 96.4 | |
| PRK09859 | 385 | multidrug efflux system protein MdtE; Provisional | 96.38 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 96.34 | |
| PRK12784 | 84 | hypothetical protein; Provisional | 96.32 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 96.3 | |
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 96.26 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 96.22 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 96.17 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 96.14 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 96.07 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 95.9 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 95.84 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 95.74 | |
| PF12700 | 328 | HlyD_2: HlyD family secretion protein; PDB: 3LNN_B | 95.67 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 95.67 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 95.57 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 95.52 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 95.5 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 95.42 | |
| TIGR02971 | 327 | heterocyst_DevB ABC exporter membrane fusion prote | 95.33 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 95.33 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 95.32 | |
| PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 95.29 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 95.08 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 95.06 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 94.76 | |
| PRK07051 | 80 | hypothetical protein; Validated | 94.71 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 94.67 | |
| PF01597 | 122 | GCV_H: Glycine cleavage H-protein; InterPro: IPR00 | 94.55 | |
| PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl ca | 94.22 | |
| PF13375 | 101 | RnfC_N: RnfC Barrel sandwich hybrid domain | 94.16 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 94.15 | |
| PRK06549 | 130 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 94.03 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 93.92 | |
| COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabo | 93.9 | |
| cd06252 | 316 | M14_ASTE_ASPA_like_2 A functionally uncharacterize | 93.89 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.65 | |
| COG0509 | 131 | GcvH Glycine cleavage system H protein (lipoate-bi | 93.57 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 93.54 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 93.38 | |
| cd06253 | 298 | M14_ASTE_ASPA_like_3 A functionally uncharacterize | 93.37 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 93.36 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 93.22 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 93.21 | |
| PF06973 | 188 | DUF1297: Domain of unknown function (DUF1297); Int | 93.15 | |
| PF11379 | 355 | DUF3182: Protein of unknown function (DUF3182); In | 93.09 | |
| COG3608 | 331 | Predicted deacylase [General function prediction o | 93.07 | |
| cd06251 | 287 | M14_ASTE_ASPA_like_1 A functionally uncharacterize | 92.97 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 92.93 | |
| TIGR02994 | 325 | ectoine_eutE ectoine utilization protein EutE. Mem | 92.88 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 92.66 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 92.36 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 92.2 | |
| PRK06748 | 83 | hypothetical protein; Validated | 92.14 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 91.96 | |
| cd06250 | 359 | M14_PaAOTO_like An uncharacterized subgroup of the | 91.93 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 91.89 | |
| cd06254 | 288 | M14_ASTE_ASPA_like_4 A functionally uncharacterize | 91.84 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 91.81 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 91.81 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 91.78 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 91.57 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 91.44 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 91.34 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 91.29 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 90.82 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 90.79 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 90.67 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 90.64 | |
| PF13437 | 105 | HlyD_3: HlyD family secretion protein | 90.54 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 90.27 | |
| PF00364 | 74 | Biotin_lipoyl: Biotin-requiring enzyme; InterPro: | 90.1 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 90.07 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 90.02 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 90.01 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 89.97 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 89.92 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 89.7 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 89.69 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 89.63 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 89.62 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 89.54 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 89.49 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 89.48 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 89.46 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 89.27 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 89.27 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 89.18 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 89.17 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 89.15 | |
| PLN02921 | 327 | naphthoate synthase | 89.05 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 89.04 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 89.02 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 89.01 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 88.98 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 88.94 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 88.84 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 88.81 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 88.8 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 88.78 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 88.75 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 88.71 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 88.71 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 88.68 | |
| PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 88.68 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 88.68 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 88.63 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 88.61 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 88.54 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 88.53 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 88.46 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 88.35 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 88.33 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 88.29 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 88.23 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 88.18 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 88.12 | |
| TIGR00531 | 156 | BCCP acetyl-CoA carboxylase, biotin carboxyl carri | 88.09 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 87.95 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 87.9 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 87.87 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 87.79 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 87.79 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 87.73 | |
| cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carb | 87.72 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 87.68 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 87.68 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 87.62 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 87.54 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 87.52 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 87.47 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 87.41 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 87.4 | |
| PRK10949 | 618 | protease 4; Provisional | 87.38 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 87.33 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 87.28 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 87.2 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 87.03 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 86.99 | |
| cd00210 | 124 | PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s | 86.84 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 86.83 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 86.76 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 86.76 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 86.72 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 86.57 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 86.49 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 86.37 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 86.37 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 86.32 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 86.31 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 86.24 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 85.98 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 85.91 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 85.89 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 85.77 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 85.66 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 85.65 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 85.6 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 85.4 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 85.4 | |
| PF13437 | 105 | HlyD_3: HlyD family secretion protein | 85.16 | |
| PF00529 | 305 | HlyD: HlyD family secretion protein the correspond | 85.07 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 84.84 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 84.75 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 84.65 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 84.57 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 84.52 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 84.35 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 84.34 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 84.34 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 84.27 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 84.22 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 84.22 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 84.05 | |
| TIGR01936 | 447 | nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo | 83.77 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 83.69 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 83.5 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 83.32 | |
| PLN02983 | 274 | biotin carboxyl carrier protein of acetyl-CoA carb | 83.32 | |
| TIGR03794 | 421 | NHPM_micro_HlyD NHPM bacteriocin system secretion | 83.31 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 83.13 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 82.87 | |
| PLN02226 | 463 | 2-oxoglutarate dehydrogenase E2 component | 82.79 | |
| cd06255 | 293 | M14_ASTE_ASPA_like_5 A functionally uncharacterize | 82.69 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 82.66 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 82.61 | |
| PF06849 | 124 | DUF1246: Protein of unknown function (DUF1246); In | 82.58 | |
| PRK09439 | 169 | PTS system glucose-specific transporter subunit; P | 82.44 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 82.43 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 82.32 | |
| PF09891 | 150 | DUF2118: Uncharacterized protein conserved in arch | 82.05 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 81.85 | |
| PRK05352 | 448 | Na(+)-translocating NADH-quinone reductase subunit | 81.62 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 81.61 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 81.6 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 81.49 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 81.4 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 81.33 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 81.26 | |
| cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar | 80.97 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 80.95 | |
| KOG0559 | 457 | consensus Dihydrolipoamide succinyltransferase (2- | 80.12 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 80.08 |
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=4516.68 Aligned_cols=2146 Identities=52% Similarity=0.847 Sum_probs=2042.2
Q ss_pred CCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh
Q 000086 22 GAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI 101 (2304)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ 101 (2304)
.+.+..+++..+.+.|||+++||+++|+||||||||++|+++|||+|+|.|++|++|+.|+||+|+||+|+.+|++|+||
T Consensus 28 ~~~~~~~~~~~s~v~efvk~~gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrm 107 (2196)
T KOG0368|consen 28 LGGNSSDDFTVSKVAEFVKRLGGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRM 107 (2196)
T ss_pred ccCCcccccccccHHHHHHHhcCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhh
Confidence 35667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHH
Q 000086 102 ADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181 (2304)
Q Consensus 102 ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq 181 (2304)
||+++.+||++|+|||+|+|.|+++|++..+||||+||||+||||++|+.|.+.||.|+|||..+|+.+|||+.+..+||
T Consensus 108 ADqyvevPgGtNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQ 187 (2196)
T KOG0368|consen 108 ADQYVEVPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQ 187 (2196)
T ss_pred hhheeeCCCCCCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCcCCCCCCCccC---CCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHH
Q 000086 182 AANVPTLPWSGSHVKI---PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 258 (2304)
Q Consensus 182 ~aGVPtpp~s~~~~~~---~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a 258 (2304)
++||||.||+++|+++ +.+.++++||+|+|.++||.+++|++++|++||||+|||+++||||||||+|++.+|+..+
T Consensus 188 sa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~l 267 (2196)
T KOG0368|consen 188 SAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKAL 267 (2196)
T ss_pred hcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHH
Confidence 9999999999999993 4456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 000086 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2304)
Q Consensus 259 ~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlak 338 (2304)
|++++.|.||+|+|+|+.+.++||+|||+++|+||+++++++||||+||||||||||||+++.+++++++|+++|+|+++
T Consensus 268 f~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak 347 (2196)
T KOG0368|consen 268 FKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAK 347 (2196)
T ss_pred HHHHHhhCCCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccc
Q 000086 339 CVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWR 418 (2304)
Q Consensus 339 alGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~ 418 (2304)
.+||++++||||+|.|++|+|||||+|||||+|||+|||++|||||++|||+|||+||++|||||+|||.+|+|
T Consensus 348 ~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~G------ 421 (2196)
T KOG0368|consen 348 LVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTG------ 421 (2196)
T ss_pred hhcceecceEEEEEecCCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEE
Q 000086 419 KTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFA 498 (2304)
Q Consensus 419 ~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via 498 (2304)
+++|+|+ .+..|.|+||||+||||+|||++||+|++|+|++++|+|+++||+||+|+.||+||+|+||||||||+
T Consensus 422 ---dS~idfe--~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa 496 (2196)
T KOG0368|consen 422 ---DSPIDFE--NAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFA 496 (2196)
T ss_pred ---CCCCChh--hccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceeee
Confidence 9999998 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHH
Q 000086 499 FGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASA 578 (2304)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 578 (2304)
+|+||++|+++|+.||++++|||+|+|+++||++||++++|++|+|+|+|||.+|++++++++|+++++++|||+.+++.
T Consensus 497 ~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYLI~LLet~dF~~N~i~TgWLD~~Ia~kv~~~~p~~~l~VvcgAa~~g~~ 576 (2196)
T KOG0368|consen 497 FGESRQEAIANMVVALKELSIRGDFRTTVEYLIDLLETEDFESNKIDTGWLDKRIAMKVRAERPDIMLAVVCGAAVKGSS 576 (2196)
T ss_pred ecCcHHHHHHHHHHHHHheeeccccCchHHHHHHHHHhhhhhhccCcchhHHHHHHHHhhccCCCcceeeehhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCee
Q 000086 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS 658 (2304)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s 658 (2304)
.....+..|.++|++||+||++.+.+.++++|+++|.+|.++|++.+++.|++.+||+.++|.++.++||++++.+||++
T Consensus 577 ~~~~~~~~y~~~LerGQV~p~~~L~~~~~vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks 656 (2196)
T KOG0368|consen 577 TSRTVFEKYEHSLERGQVPPKDFLLNTFDVDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKS 656 (2196)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHhhhcceeEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 659 HVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 659 ~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
|++|++++.+++|+++|++||.|++++||++|+||.|||+++|+|++|+||++||+||+||+|||.|+|.|+++|+|+.+
T Consensus 657 ~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i 736 (2196)
T KOG0368|consen 657 YTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI 736 (2196)
T ss_pred EEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCCCEEEEEecCCCCccccCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhhc
Q 000086 739 MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCL 818 (2304)
Q Consensus 739 ~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~il~GYd~~~~~~v~~l~~~L 818 (2304)
++||+.+++|++||.+++|+||+|.++.||+|.||.++.|...++|+|++|+..++.|.|||+|||+.+++++++|+++|
T Consensus 737 ~~~G~~i~aG~vlakL~lDdpSkv~~a~pf~G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~L 816 (2196)
T KOG0368|consen 737 KQEGDAIEAGSVLAKLTLDDPSKVQHALPFHGSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVL 816 (2196)
T ss_pred cCCCCccCccceeEEeecCChhhhcccCCccccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhcCCChhHHHHHHHHhhhhhhcccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHH
Q 000086 819 DSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMS 898 (2304)
Q Consensus 819 ~dp~LP~~e~~~~ls~Ls~RiP~~L~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 898 (2304)
|||+|||+||++++|+|++|||+.|++.+..++++|+++. .+||+++|.++++.|+++++..+|..++.+++||++
T Consensus 817 r~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~----t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~ 892 (2196)
T KOG0368|consen 817 RDPELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRI----TQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLK 892 (2196)
T ss_pred cCCCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhc----ccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHH
Confidence 9999999999999999999999999999999999988875 499999999999999999988999999999999999
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHHHhhhcccC--CCcHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhhHHHHHHHHHh
Q 000086 899 LVKSYEGGRESHARVIVQSLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQL 976 (2304)
Q Consensus 899 ~~~~~~~G~~~~~~~~~~~ll~~y~~ve~~f~--~~~~~~~i~~lr~~~~~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~ 976 (2304)
|+++|++|+++|++.++++||++|++||++|+ +..+|+||.+||++||+|+.+|+++++||+++.+||+||++||+++
T Consensus 893 l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l 972 (2196)
T KOG0368|consen 893 LVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQL 972 (2196)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999 6689999999999999999999999999999999999999999999
Q ss_pred cCC---CChhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-hhccccCCCCCCCcCccchHHHH
Q 000086 977 VYP---NPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-EMFTEDGESMDTPKRKSAIDERM 1052 (2304)
Q Consensus 977 ~~~---~~~~~~~~L~~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 1052 (2304)
+.+ .+..|+++|.+|++|+++.+++||++|||||+++ ||++.|++|+++|+ +.+. ++|... +.+|.+.|
T Consensus 973 ~~~s~~~~~~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~--ps~~~R~n~~e~i~~s~i~-~~g~~~----~~~~~~~l 1045 (2196)
T KOG0368|consen 973 KPPSSKVSDEFRDILRKLTELNHTNTSEVALKARQILIQS--PSYELRHNQIESILKSSIV-MTGYQF----KKPCLEIL 1045 (2196)
T ss_pred cCCCCCCCHHHHHHHHHHHhhccchHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhhhh-cccCcc----cccchhHH
Confidence 863 3556999999999999999999999999999999 99999999999999 5544 455522 24799999
Q ss_pred HHhhcCCchhHHhhhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecceEEEEEEecccccccC-CCCCC---
Q 000086 1053 EDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPEDQ--- 1128 (2304)
Q Consensus 1053 ~~l~~s~~~~~d~L~~~f~~~~~~~~~~alevyvrR~Y~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~--- 1128 (2304)
++|++|++++||+|+.||+|+|++|+.+||||||||+|++|.++++...++....++++|+|.+++ |.+ +.++.
T Consensus 1046 ~~lidS~~~v~dvL~~fF~H~d~~v~~~alevYv~ray~ay~v~si~~~~~~~~~~v~~~~F~l~~--~~n~~~~~~~~n 1123 (2196)
T KOG0368|consen 1046 KELIDSNLSVFDVLPGFFYHSDPTVSSAALEVYVRRAYIAYVVKSIKHHQGAPSPCVVSWHFSLPS--RKNISLSPSELN 1123 (2196)
T ss_pred HhhccchhhHHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCceEEEEEEeccc--cccCCCCccccc
Confidence 999999999999999999999999999999999999999999993333333345588999999975 211 11111
Q ss_pred --CCCCcccccccccceeeEEEccCCCcHHHHHHHHHHhccc----CCCCccccCCCCcCCCCcEEEEEEeccccccccc
Q 000086 1129 --TPEQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAH----SRNDSISKGSAQTASYGNMMHIALVGMNNQMSLL 1202 (2304)
Q Consensus 1129 --~~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 1202 (2304)
++..+ ..+.+.|.|.|+.+++++++...+++++++... ..++.. +.+. .+..+|++||++.. .
T Consensus 1124 ~~~~v~~--~~s~~~r~G~mv~~~tf~d~~~~~~~~l~~~~~~~~~~~~~~a-~~~~-~s~~~~~~nv~~~~-------t 1192 (2196)
T KOG0368|consen 1124 ELSVVDS--GKSSPQRFGTMVAFRTFEDLVRILDEVLDCLKHSPREYPNPEA-DTSL-SSADINNVNVLLQS-------T 1192 (2196)
T ss_pred chhhhhc--cCCchhhcchhhhHHHHHHHHHHHHHHHHhhccCccccCCccc-cccc-ccchhhheeeeecc-------c
Confidence 11111 123357999999999999999999999999221 111111 1111 12338899998874 3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEecCCCccCCCccccccccCCCCcchhh
Q 000086 1203 QDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYL 1282 (2304)
Q Consensus 1203 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~P~~~tfr~~~~~~~~~Ed~~~R~~~p~~a~~L 1282 (2304)
.+. +++++..++.+++++++. .|..++||||||++.+..+++|+||||. ++.|.||+.+||+||+++|||
T Consensus 1193 ~d~-e~~~~~~~L~~~l~e~~~-----~l~~~~v~rit~~~~~~~~~~pk~~tf~----~~~y~ed~~~rhlepal~~~L 1262 (2196)
T KOG0368|consen 1193 GDL-EDEELVSKLREILQEEER-----SLADHGVRRITFIIGREEGRYPKFYTFN----GDYYNEDRILRHLEPALAFQL 1262 (2196)
T ss_pred Cch-hhhHHHHHHHHHHHHHHH-----HHHhcccceEEEEeeeccccCcceeecc----ccccccccccccCChhHHHHH
Confidence 444 456899999999999999 8999999999999998888999999994 368999999999999999999
Q ss_pred hhccccCCCCceeeccCCCcceEEEeecCCCCceeEEEEEeecCCCCCCCCccCccccCCccccccccccchHHHHHHHH
Q 000086 1283 ELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLM 1362 (2304)
Q Consensus 1283 el~rl~nf~~i~~~p~~~~~~hly~~~~k~~~d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~l~~~l 1362 (2304)
||+||+||+ |+++||.|++||+|.+++|..+|+|||+|++||+++++++.+++ || ++++++|++.++|
T Consensus 1263 EL~rl~n~~-i~~~p~~n~~~h~y~~~sk~~pdkrfF~R~ivR~~~~~d~~~~~---E~--------l~se~~r~l~~al 1330 (2196)
T KOG0368|consen 1263 ELDRLSNYN-ITSVPTDNHKIHLYSVTSKVSPDKRFFVRAIVRQGDLNDDKATA---EY--------LQSEANRLLLDAL 1330 (2196)
T ss_pred HHhhhhcCC-cccccccCcceEEEeeecccCchHHHHHHHHhhhhccccchhhH---HH--------HHHHHHHHHHHHH
Confidence 999999998 99999999999999999999999999999999999999999888 99 9999999999999
Q ss_pred HHHHHHhhcccccCCCCCccEEEEEEeccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHHhhhhhhccceeEE
Q 000086 1363 AAMEELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEW 1442 (2304)
Q Consensus 1363 d~le~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~V~~~ 1442 (2304)
|+||++ ++ ....++||||||+|| .|++.++| ++++++++.|++|||+|||+|||++|
T Consensus 1331 d~leva-~~--~~~~~td~nhiFl~f---~~~~~i~p-----------------~~~ee~v~~~~~~~g~Rl~~lrv~~a 1387 (2196)
T KOG0368|consen 1331 DELEVA-NN--TDASKTDLNHIFLNF---VPVVIIDP-----------------SKLEEAVRGILKRIGKRLWRLRVTEA 1387 (2196)
T ss_pred HHhhhh-hh--cccccccccceeeec---ceeeccCH-----------------HHHHHHHHHHHHHHHHHHHHhhhcee
Confidence 999998 33 234478999999999 99999999 89999999999999999999999999
Q ss_pred EEEEEeeecC-CCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEeecccccCCccccccccCchhhhhhhhhccc
Q 000086 1443 EVKLWMAYSG-QANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVLDQKRLLARR 1521 (2304)
Q Consensus 1443 Eir~~~~~~~-~~~~p~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g~~g~~~~~~~~~pY~~~~~~~~kr~~a~~ 1521 (2304)
|+|+++++.. ...+|+|++++|.|||++++++|+|+++.+|.++ |+++|++||+||+||++|||+|||+|+||++||+
T Consensus 1388 ei~i~~~~~~t~~~~p~R~~i~NesGyv~~~e~y~Ev~~~~~~~i-~~s~gk~g~~h~~~istpY~~kd~lq~KR~~A~~ 1466 (2196)
T KOG0368|consen 1388 EIRIIIRDPGTGAPGPLRLVISNESGYVVTTEVYTEVKERNGSLI-FHSIGKQGPLHGRPISTPYPPKDWLQPKRLAARR 1466 (2196)
T ss_pred eEEEEEecCCCCCCcceEEEEEcccccEEEEEEEEeecccCccee-eeccCCCCcccccccCCCCCCchhhcHHHHHHHh
Confidence 9997776654 2356999999999999999999999999877777 9999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCccccCCCcccchhhhhcccCccCCCCcchhHHHHHHHHHHHhHhhhCC-CCCCCCcCcccccccc
Q 000086 1522 SNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFETALEQSWASQFP-NMRPKDKALLKVTELK 1600 (2304)
Q Consensus 1522 ~~t~y~yd~p~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~el~ 1600 (2304)
+||||+||||+ ||+++....|++..+ ...+.+.++++..||+
T Consensus 1467 ~gTTYiYDFP~-------------------------------------~F~~a~~~~Wks~~~~~k~~~~~~~f~~~ELV 1509 (2196)
T KOG0368|consen 1467 MGTTYIYDFPE-------------------------------------MFRQAASKLWKSPSSGVKVKLWDDFFQVKELV 1509 (2196)
T ss_pred cCCeEEeecHH-------------------------------------HHHHHHHHhhcCCCcccCCCcchhhheeeeee
Confidence 99999999999 999999999997753 3457889999999999
Q ss_pred ccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCE
Q 000086 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPL 1680 (2304)
Q Consensus 1601 ~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~ 1680 (2304)
+|+ +| .|.+++|.||.|+||||||.++++|||||+||+++|++||+||+.||||+.||+.|.++++|||++|||+
T Consensus 1510 ~de-~g----~L~~vnR~pG~N~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPr 1584 (2196)
T KOG0368|consen 1510 LDE-NG----ELTEVNREPGLNSCGMVAWKLTVKTPEYPEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPR 1584 (2196)
T ss_pred ecC-CC----cEEEeccCCCCCcceeEEEEEEecCCCCCCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCe
Confidence 998 88 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccc
Q 000086 1681 IYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGV 1760 (2304)
Q Consensus 1681 I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gv 1760 (2304)
||+++|||||||+||++.++|+|+|+|+.+|++||.|||+++++|+++.++++.+++..+.||.||+|++|+|+++||||
T Consensus 1585 IylaaNSGARIGlAeei~~lfkVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGV 1664 (2196)
T KOG0368|consen 1585 IYLAANSGARIGLAEEIKPLFKVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGV 1664 (2196)
T ss_pred EEEeccCccccccHHHHHHHheeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999987665544444899999999999999999999
Q ss_pred cccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCccee
Q 000086 1761 ENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI 1840 (2304)
Q Consensus 1761 e~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i 1840 (2304)
|||+|||+||||||+||++|||||+||||++|||||++|||+|+||+++++|||||++|||++||++|||||.||||+||
T Consensus 1665 EnL~GSGlIAGetSrAY~ei~T~t~VT~RsVGIGAYlvRLgqR~IQve~~~iILTGa~ALNklLGreVYTSN~QLGG~qI 1744 (2196)
T KOG0368|consen 1665 ENLRGSGLIAGETSRAYNEIFTITLVTGRSVGIGAYLARLGQRIIQVEDQHIILTGASALNKLLGREVYTSNNQLGGPQI 1744 (2196)
T ss_pred eeccccccccchhhhhhhccceEEEEecceeeHHHHHHHHHHHHHHhcCCceEEeCHHHHHHHhcccccccccccCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccccC--CCCChHHHhhcccCCCCCcccccc
Q 000086 1841 MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIF 1918 (2304)
Q Consensus 1841 ~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~--~~yD~r~~i~~~~d~~~~~~~gl~ 1918 (2304)
|+.||++|++|.||.+|+.+|++||||+|+.+++++|+.++.|+|+|+++++|+ .+|||||+|+|+.|+++ |++|||
T Consensus 1745 M~~NGVsHlTv~dDleGV~ki~~WlSY~Pa~~~~~~P~l~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~-~~~GlF 1823 (2196)
T KOG0368|consen 1745 MHRNGVSHLTVSDDLEGVAKILNWLSYLPAKRNSPVPFLEPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTG-WLSGLF 1823 (2196)
T ss_pred eccCCceEEEecccHHHHHHHHHHHHhCCcccCCCCCccCCCCCcccceeccCCCCCCCCHHHHhcCCcCCCc-cccccc
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999988 999999
Q ss_pred cCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhc
Q 000086 1919 DKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR 1998 (2304)
Q Consensus 1919 D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~ 1998 (2304)
|+|||+|++.+||++||||||||||+||||||+||++++..+||||||++|+|+++++|||||||+||+||||+|.|||+
T Consensus 1824 Dk~SF~Eil~~WAktVV~GRArLgGIPvGVIavEtrtve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNr 1903 (2196)
T KOG0368|consen 1824 DKGSFDEILSGWAKTVVTGRARLGGIPVGVIAVETRTVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNR 1903 (2196)
T ss_pred cCccHHHHHhHHhhHheecceecCCcceEEEEEEeeeeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEE
Q 000086 1999 EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKG 2078 (2304)
Q Consensus 1999 ~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~ 2078 (2304)
++|||++|+||||||||++||++++||+||.||++|++|++|+++||||.||+|||+|+|+||+||+|.|||||+.++|+
T Consensus 1904 EqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDaL~~YkQPv~vYIPp~gELRGGsWvVvD~tIn~~~memyAD~~sRg 1983 (2196)
T KOG0368|consen 1904 EQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDALRQYKQPVLVYIPPMGELRGGSWVVVDPTINPDQMEMYADEESRG 1983 (2196)
T ss_pred ccCCeEEeecccccCccchHHHHHHHHHHHHHHHHHHHhCCceEEEcCcchhhcCceEEEEcCccCHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccH
Q 000086 2079 NVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTS 2158 (2304)
Q Consensus 2079 gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~ 2158 (2304)
||++|+|+|+||||+++++++|.|+|+.|+.|+.++.++ .+++++++.++++|++||++|+|+|+|++++|||+|||+
T Consensus 1984 gVLEPeg~v~IKfRre~Lle~MrR~D~~y~~L~~~l~~~--~ls~~~~~~l~kqLk~Re~~L~piY~QisvqFAdlHDr~ 2061 (2196)
T KOG0368|consen 1984 GVLEPEGVVEIKFRREMLLEMMRRLDPTYIKLKSSLSEA--KLSPEDRKDLQKQLKEREEQLLPIYNQISVQFADLHDRS 2061 (2196)
T ss_pred ccccCCceEEEEeeHHHHHHHHHhcchhhhhhhhhcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 999999999999999999999999999999999999987 788999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHhhhccccccccCCCccCchhHH
Q 000086 2159 LRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFF 2238 (2304)
Q Consensus 2159 ~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 2238 (2304)
+||++||||.++++|.++|+||||||||||+|+.++++|.++.+. +|..+.+++|++||..+. ++. .|+||+.|+
T Consensus 2062 ~RM~~kgVI~~~lew~~sRrffywrLrr~l~e~~~~~~i~~~~p~-lt~~~~~~~l~~w~~~~~-~~~---~~~~d~~v~ 2136 (2196)
T KOG0368|consen 2062 GRMKAKGVISKVLEWTESRRFFYWRLRRRLAEDQLLKEILSASPD-LTYKEKQAMLQKWFEESE-GAV---KWEDDQQVV 2136 (2196)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHhc-ccc---ccccchhHH
Confidence 999999999999999999999999999999999999999999996 899999999999998765 223 399999999
Q ss_pred HhhcCchHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHHhcCCHHHHHHHHHHHH
Q 000086 2239 TWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEIS 2300 (2304)
Q Consensus 2239 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2300 (2304)
+|+|++.+|+++|++|+.++++++|+.+++++ ++.++ +||.++++++|+.+|+++++.|+
T Consensus 2137 ~w~e~~~~~~~~i~~l~~~~~~~~l~~~~~sd-~~~~~-~~l~~~~~~is~~~r~el~~~l~ 2196 (2196)
T KOG0368|consen 2137 TWIEEQSTIEKNIEELKETYLLDQLAKLINSD-RKGAI-DGLAELLNKISPKRREELVGALS 2196 (2196)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhC-hhhHH-HHHHHHHHhcChHHHHHHHHhhC
Confidence 99998888999999999999999999999997 88888 59999999999999999999874
|
|
| >PF08326 ACC_central: Acetyl-CoA carboxylase, central region; InterPro: IPR013537 This region is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (IPR000022 from INTERPRO) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-128 Score=1261.40 Aligned_cols=678 Identities=36% Similarity=0.530 Sum_probs=3.5
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHhhcCCCCCchhHHHHHH
Q 000086 755 DLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHN--IEEVVQNLLNCLDSPELPLLQWQECM 832 (2304)
Q Consensus 755 ~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~il~GYd~~--~~~~v~~l~~~L~dp~LP~~e~~~~l 832 (2304)
++||||+|++++||+|.||.++.|...+.|+|++|+.+++.|+|||+||+++ ++++|++|+++|+||+|||+||+++|
T Consensus 1 ~LDDPS~V~~a~pF~G~lp~~~~~~~~g~k~~~~~~~~~~~l~niL~GY~~~~~~~~~v~~L~~~L~dp~LP~~E~~e~l 80 (708)
T PF08326_consen 1 ELDDPSKVKKAQPFEGTLPEMGPPQIEGEKPHQRFRAALEILHNILAGYDNQNIMNETVKELFEVLRDPELPYLEWQEVL 80 (708)
T ss_dssp E-S-S----S----------------------------------------------------------------------
T ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999665 99999999999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHHhhhhhhcccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHHHHHhhcCChhhHHH
Q 000086 833 AVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912 (2304)
Q Consensus 833 s~Ls~RiP~~L~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~G~~~~~~ 912 (2304)
|+|++|||++|+++|++++++|..+. .+||+++|+++++.|++ +.+ |+.|+++++||.+++++|++|+++|++
T Consensus 81 s~l~~RiP~~l~~~i~~~~~~~~~~~----~~FPa~~l~~~i~~~~~-~~~--r~~~~~~~~pL~~l~~~y~~G~~~h~~ 153 (708)
T PF08326_consen 81 SALSGRIPAKLEAQIRQLLERYKSRI----TSFPAKQLRKIIDSYLA-LEP--RAAFFATVAPLVDLVQRYRGGLKGHAK 153 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccCCHHHHHHHHHHHHHHhhcc----CCCcHHHHHHHHHhhhc-cCc--HHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999997776664 44999999999999999 533 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhhHHHHHHHHHhcccchhhhHHHHHHHHHhcCC---CChhHHHHHH
Q 000086 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYP---NPAAYRDKLI 989 (2304)
Q Consensus 913 ~~~~~ll~~y~~ve~~f~~~~~~~~i~~lr~~~~~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~~~~---~~~~~~~~L~ 989 (2304)
+++.+||++|++||++|+++++|+||..||++||+|+++|+++++||++++.||+||++||+++..+ .+..++++|+
T Consensus 154 ~v~~~LL~~Yl~VE~~F~~~~~d~vI~~LR~~~k~dl~~Vv~~~~SH~~v~~Kn~Lil~lL~~l~~~~~~~~~~~~~~L~ 233 (708)
T PF08326_consen 154 SVVADLLEEYLSVEKLFQGKRYDDVILSLREENKDDLDKVVDIILSHSQVKSKNKLILALLDQLSEPNMPLTASLRDILK 233 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 9999999999999999999899999999999999999999999999999999999999999999755 4667999999
Q ss_pred HHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-h--h-ccccCCCCCCCcCccchHHHHHHhhcCCchhHHh
Q 000086 990 RFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-E--M-FTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDA 1065 (2304)
Q Consensus 990 ~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~~~~d~ 1065 (2304)
+|++|++++|++|||+|||||++|++||+++|++||+++| + + .++.||+.++.++ +++.++|++||+|+++|||+
T Consensus 234 ~La~L~~~~~~~VAL~AR~iLi~~~lPS~e~R~~q~e~iL~s~~~v~~~~~g~~~~~~~-~~~~~~l~~Li~s~~~vfDv 312 (708)
T PF08326_consen 234 RLAELESRSYSKVALKAREILIQCQLPSYEERRNQMEHILRSLISVVESSYGEDFAKHR-EPSPEVLKELIDSPTTVFDV 312 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhhCCChhHHHHHHHHHHhcchhhhhhhccccccccc-cccHHHHHHHHcCCCcchhh
Confidence 9999999999999999999999999999999999999999 3 2 3455888776666 89999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecc---eEEEEEEecccc--c----------ccCCCCCCCC
Q 000086 1066 LVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCG---LIASWEFLEEHI--E----------RKNGPEDQTP 1130 (2304)
Q Consensus 1066 L~~~f~~~~~~~~~~alevyvrR~Y~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~--~----------~~~~~~~~~~ 1130 (2304)
|+.||+|+|++|+.+||||||||+|++|.|+ +++|+..+ ++++|+|.+|+. + +..+.+++++
T Consensus 313 L~~fF~h~d~~v~~aAlEvYVRRaYraY~l~---~i~~~~~~~~~~~~~w~F~L~~~~~~~~~~~~~~~~r~~s~s~~~~ 389 (708)
T PF08326_consen 313 LPSFFDHSDPWVARAALEVYVRRAYRAYSLK---SIQHHELDDGPPIVSWQFMLPSSHPSRFNSSPSSSSRFASVSDLSY 389 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHhcCCChHHHHHHHHHHHHHhccceeee---eEEEEEcCCCceEEEEEEECCCccccccCccccccccccCCChhhh
Confidence 9999999999999999999999999999999 89988755 889999988762 1 4456677776
Q ss_pred CCcccccccccceeeEEEccCCCcHHHHHHHHHHh-cccCCCCccccCCCCcCCCCcEEEEEEecccccccccCCCCCHH
Q 000086 1131 EQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRE-TAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209 (2304)
Q Consensus 1131 ~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~g~~~ 1209 (2304)
+.+. ....|+|+|+.|++++++.+.++++|+. +.... ..+..+...+++.||+||++++. .+.. +|+
T Consensus 390 ~~~~---~~~~R~Gvmv~~~~l~~l~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~nVl~val~~~------~~~~-~d~ 457 (708)
T PF08326_consen 390 LIDS---SSSERTGVMVAFDSLEDLEEALPAALEEFPDADG--NTSTGSGSSSEPINVLNVALSDS------SGSD-DDE 457 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhh---cccccceEEEEeCcHHHHHHHHHHHHHhhccccc--ccccccCCCCCCCeEEEEEEecC------CCCc-CHH
Confidence 6553 2234999999999999999999999998 32210 00011122357899999999862 2222 577
Q ss_pred HHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEecCCCccCCCccccccccCCCCcchhhhhccccC
Q 000086 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKG 1289 (2304)
Q Consensus 1210 ~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~P~~~tfr~~~~~~~~~Ed~~~R~~~p~~a~~Lel~rl~n 1289 (2304)
++.++|+++|++++. .|..+|||||||+++++.+.+|+|||||++ ++|.||++|||+||++||||||+||+|
T Consensus 458 e~~~~l~~~l~~~~~-----~L~~~~vrrVt~~v~~~~~~~P~~fTFr~~---~~~~Ed~~~R~ieP~la~~LEL~RL~n 529 (708)
T PF08326_consen 458 ELAEKLEAILKENKS-----ELRAAGVRRVTFIVARDEGQYPKYFTFRAS---DEYEEDRLIRHIEPALAFQLELWRLSN 529 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHH-----HHHhcCceEEEEEEccCCCCCceEEEeCCC---CCcchhhHhccCCchhHHHhhhhhhhC
Confidence 899999999999998 999999999999999966789999999964 469999999999999999999999999
Q ss_pred CCCceeeccCCCcceEEEeecCC--CC-ceeEEEEEeecCCCCCCCCccCccccCCccccccccccchHHHHHHHHHHHH
Q 000086 1290 YDNIQYTLSRDRQWHLYTVVDKP--LP-IRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366 (2304)
Q Consensus 1290 f~~i~~~p~~~~~~hly~~~~k~--~~-d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~l~~~ld~le 1366 (2304)
|+ |+++||.|++||||+|++|+ ++ |+|||+|++||++++.+++... +| +.+++||+|.+|||+||
T Consensus 530 f~-i~~~ps~~~~~HlY~a~~k~~~~~~d~R~F~RaiVR~~~~~~~~~~~---~~--------~~~e~er~l~~~Ld~Le 597 (708)
T PF08326_consen 530 FD-ITRLPSRNRQIHLYRAVAKKKQNPADRRFFARAIVRQGDLRRDESGA---EY--------LISEAERLLADALDALE 597 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-cEEecCCCCceEEEEEeccCCCCCCceEEEEEEEeecCccccccchh---hh--------hhhhHHHHHHHHHHHHH
Confidence 99 99999999999999999998 66 9999999999999999888777 77 88999999999999999
Q ss_pred HHhhcccccCCCCCccEEEEEEeccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHHhhhhhhccceeEEEEEE
Q 000086 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKL 1446 (2304)
Q Consensus 1367 ~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~V~~~Eir~ 1446 (2304)
++..++ ..+++||||||||| ||+++++| .++++++++|++|||+|||||||++||||+
T Consensus 598 ~a~~~~--~~~~~d~Nhifln~---~p~~~~~~-----------------~~le~~~~~~~~r~g~RL~rLrV~~vEir~ 655 (708)
T PF08326_consen 598 VAQSNP--RVKRTDCNHIFLNF---WPELELDP-----------------EDLEAAVRGFVERYGRRLWRLRVTQVEIRI 655 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhccc--ccccccCceEEEEE---ecccCCCH-----------------HHHHHHHHHHHHHHHHHHHhcCccEEEEEE
Confidence 998773 24578999999999 99999998 999999999999999999999999999995
Q ss_pred Eeeec-CCCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEee-cccccC
Q 000086 1447 WMAYS-GQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVA-VRGLLH 1498 (2304)
Q Consensus 1447 ~~~~~-~~~~~p~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g-~~g~~~ 1498 (2304)
+++.. .....|+|++++|+|||++++++|+|++|++|+++ |+|+| ++||||
T Consensus 656 ~~~~~~~~~~~p~Rvvisn~sG~~~~v~~Y~E~~~~~g~~i-f~si~~~~G~~h 708 (708)
T PF08326_consen 656 RIRDPSTGAPIPVRVVISNPSGYVVKVEIYREVKDPKGEWI-FKSIGSKPGPLH 708 (708)
T ss_dssp ------------------------------------------------------
T ss_pred EeccCCCCCccceEEEEECCCCCeEEEEEEEEEECCCCCEE-EEECCCCCCCCC
Confidence 55522 22355999999999999999999999999997777 99999 699998
|
Enzymes containing this domain (6.4.1.2 from EC) are involved in the synthesis of long-chain fatty acids, as they catalyses the rate limiting step in this process. ; GO: 0003989 acetyl-CoA carboxylase activity, 0005524 ATP binding, 0006633 fatty acid biosynthetic process; PDB: 2DN8_A 2KCC_A 3COJ_H. |
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-121 Score=1101.78 Aligned_cols=625 Identities=31% Similarity=0.501 Sum_probs=528.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||||||++|||+||+||++|+.++ ++|+|.|+++.|+++||++|.+++.+..++|++.+.|+++
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tV-----------AVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~A 69 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTV-----------AVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDA 69 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceE-----------EEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHH
Confidence 78999999999999999999999998885 6777999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|||||||||+|||++|+++|++.|+.|||||+++++.+|||+.+|.++.++|||+.|.+.
T Consensus 70 a~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~-------------- 135 (645)
T COG4770 70 ARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYH-------------- 135 (645)
T ss_pred HHHhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
+.+.+.+++..++++|||||+||++.||||||||+|++++|+.++|+.+++|+. .+.+|||+|++.+||
T Consensus 136 -------g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRH 208 (645)
T COG4770 136 -------GPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRH 208 (645)
T ss_pred -------CcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCce
Confidence 237899999999999999999999999999999999999999999999998864 468999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+|+|+|+|+|||++++++||||+||||||+|||+|+|.++++++++|.++|+++++++||.|++||||+++. ++.||||
T Consensus 209 IEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~-~~~f~Fl 287 (645)
T COG4770 209 IEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDA-DGNFYFL 287 (645)
T ss_pred EEEEEEecCCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcC-CCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 7789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||+|||+|||+||++||+||+++|+++|.|++|+. .|.+.+.+||+|
T Consensus 288 EMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~~--------------------------------~Q~di~l~GhAi 335 (645)
T COG4770 288 EMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLPF--------------------------------TQDDIPLNGHAI 335 (645)
T ss_pred EeecceeccccchhhhhhhHHHHHHHHHhcCCcCCc--------------------------------ccccccccceeE
Confidence 999999999999999999999999999999999974 456677789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++|||+|||.++|.|++|+|..+.+|..++||++.+|..|+.|++|||||++|+|+||.||++|+.+|.+||.++.|.|
T Consensus 336 E~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~G- 414 (645)
T COG4770 336 EARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEG- 414 (645)
T ss_pred EEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHHhhhh--hhcccccccccCCCCCCc
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAA--MVSDYIGYLEKGQIPPKH 600 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 600 (2304)
+.||++||+.++++|+|+.|+.+|+|+++.++..+. ..+....++.++++... ...+. ..+.+.+.. |..-
T Consensus 415 i~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~-~~~~~~~~~aa~~~~~~-~~~~~~~~~~pw~~~~--~w~~--- 487 (645)
T COG4770 415 IATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFA-PAPASADALAAAALLAQ-PALERRAESDPWASLS--GWVV--- 487 (645)
T ss_pred ccccHHHHHHHhcCcccccCCCcceeeeeccccccc-CCCchhhhHHHHHhhhc-hhhhcccccCcccccC--Ccee---
Confidence 999999999999999999999999999999988773 22332233333222211 11111 011111000 1000
Q ss_pred ccccceeeeEeecCe-EEEEEEEee-CCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCce
Q 000086 601 ISLVNSQVSLNIEGS-KYRIDMVRR-GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2304)
Q Consensus 601 ~~~~~~~vel~~~g~-~y~v~v~~~-~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t 678 (2304)
........+..++. .+.+.+... +...+.+..+. ......+.++|......+.....++++...|..
T Consensus 488 -~~~~~~~~~~~~~~~~~~v~l~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 556 (645)
T COG4770 488 -TGDAAELRVLIDGEERVEVRLPAREGRERFYVDSDW----------DPELASAALSGRKRAVRVARAGGGLTLFWGGGS 556 (645)
T ss_pred -ecceeeeeEEecCCcceEEEEeccCCcceeeeeccC----------CccceeEEecCccccceeeecCCceEEecCCcC
Confidence 00111111222222 333333211 11011111100 001234445555555555544555555554444
Q ss_pred eccc----------cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCC
Q 000086 679 CLLQ----------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQA 747 (2304)
Q Consensus 679 ~~~~----------~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~ 747 (2304)
..+. ....++.|+|||||+|+.+.|++|+.|.+||+|++|||||||++|+||.+|+|+.+ +++|++|..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~ 636 (645)
T COG4770 557 PRIAELDKLGGAKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAV 636 (645)
T ss_pred cccccccccccccccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCcccc
Confidence 3332 23446789999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCEEEEEe
Q 000086 748 GELIARLD 755 (2304)
Q Consensus 748 G~~La~l~ 755 (2304)
|++|++++
T Consensus 637 g~vLve~~ 644 (645)
T COG4770 637 GTVLVEFE 644 (645)
T ss_pred CceEEEec
Confidence 99999986
|
|
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-114 Score=1023.11 Aligned_cols=635 Identities=29% Similarity=0.437 Sum_probs=537.5
Q ss_pred EEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHc
Q 000086 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMT 130 (2304)
Q Consensus 51 ILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~ 130 (2304)
|||||||++|+|+||+||+||++++ ++++|.|.++.|+++||++|++++.+...+|++.+.|+++|++.
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tV-----------AV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~t 69 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTV-----------AVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRT 69 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEE-----------EEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhc
Confidence 7999999999999999999998885 77779999999999999999999999999999999999999999
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
+++||||||||+|||.+|++.|+++||.|+||++++++.+|||..+|++|+++|||+.|.+.
T Consensus 70 gaqaihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~------------------ 131 (670)
T KOG0238|consen 70 GAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYH------------------ 131 (670)
T ss_pred CCceecCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999654
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~reieVq 286 (2304)
+..+|.+++.+.+++||||||||++.||||||+|++.+++|+.+.|+.++.|+. .+.+|+|+|++++||+|||
T Consensus 132 ---g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQ 208 (670)
T KOG0238|consen 132 ---GEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQ 208 (670)
T ss_pred ---cccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEE
Confidence 126899999999999999999999999999999999999999999999987763 4689999999999999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
+++|++||++++++||||+||||||+|||+|++.++++++.+|.++|+++++++||.|++||||++|+ .+.|||+|||+
T Consensus 209 v~gD~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~~FyFmEmNT 287 (670)
T KOG0238|consen 209 VFGDKHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KDNFYFMEMNT 287 (670)
T ss_pred EEecCCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcC-CCcEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 78999999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
|||+|||+|||+||+||+++||++|+|+||+. .|...+.+||+++|||
T Consensus 288 RLQVEHPvTEmItg~DLVewqiRvA~ge~lp~--------------------------------~q~ei~l~GhafE~Ri 335 (670)
T KOG0238|consen 288 RLQVEHPVTEMITGTDLVEWQIRVAAGEPLPL--------------------------------KQEEIPLNGHAFEARI 335 (670)
T ss_pred eeeecccchhhccchHHHHHHHHHhcCCCCCC--------------------------------CcceeeecceEEEEEE
Confidence 99999999999999999999999999999973 4566777899999999
Q ss_pred ccCCCCCCCCCCCCccccccccC-CCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEeccccc
Q 000086 447 TSEDPDDGFKPTSGKVQELSFKS-KPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRT 525 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~~~s-~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~t 525 (2304)
|||||..+|.|++|.+..+.+|. +|+||++.+|.+|+.|+.+|||+++++++||.||++|+.+|..||++..|+| +.|
T Consensus 336 yAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~~I~G-v~t 414 (670)
T KOG0238|consen 336 YAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRG-VPT 414 (670)
T ss_pred eecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHHHHHHhhcEEec-Ccc
Confidence 99999999999999999999875 7899999999999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHhcCccccccccccchhhhhhhhhhhccCC--CCc--hhHHHhhHHHHHHHhhhhhhcccccccccCCC---CC
Q 000086 526 NVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER--PPW--YLSVVGGALYKASASSAAMVSDYIGYLEKGQI---PP 598 (2304)
Q Consensus 526 n~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~--~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~---~~ 598 (2304)
||+||++|+.+|+|..|+++|.||+++..+.+..+. |.. ..+.++.++.... ......|... .+++. +.
T Consensus 415 nI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~~~~~~~~~a~a~~l~~~~---~~~a~~f~~~-n~~~~~v~~~ 490 (670)
T KOG0238|consen 415 NIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESITPAEQLSQAAVASSLNAWA---SGRAYQFRLQ-NKDRASVFSS 490 (670)
T ss_pred chHHHHHHhcChhhhcCccccccchhcCccccCccccCcHHHHHHHHHHHHHHHHh---hchhhHHhhc-cCCccceecc
Confidence 999999999999999999999999999887776532 211 1222222222111 1111222211 11221 11
Q ss_pred Ccccc----cceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEE-EEEE--E-ecCCceEEEeCCeeEEEEeeecccce
Q 000086 599 KHISL----VNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIE-AEIH--T-LRDGGLLMQLDGNSHVVYAEEEAAGT 670 (2304)
Q Consensus 599 ~~~~~----~~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~-V~v~--~-l~dg~l~v~~~G~s~~v~~~ee~~~~ 670 (2304)
..... ....+.+..+...+.+.+...+.+.|.+.++|+.+. +... . ...+.+.+..+|..+...........
T Consensus 491 ~~~~r~n~s~~~~~~~~~~e~~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 570 (670)
T KOG0238|consen 491 SPPFRFNCSLVVKITLKTGENPVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDGEGNGYQGRVIILGDEI 570 (670)
T ss_pred CCceEEEEeeEEEEcccCCccceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEeccCceEEEEEEeCCeE
Confidence 10000 111122222334577778888888999999888843 2221 1 12233444444444433333333333
Q ss_pred EEEEeCceecc--------------ccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEE
Q 000086 671 RLLIDGRTCLL--------------QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ 736 (2304)
Q Consensus 671 ~v~v~g~t~~~--------------~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~ 736 (2304)
.+...+....+ .++..++.+.|||||.|.+++|++||.|++||.+++|||||||+.++||.+|+|+
T Consensus 571 ~l~~~~~~~~ve~~~~k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk 650 (670)
T KOG0238|consen 571 SLFSNEGVIKVEVLPPKYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVK 650 (670)
T ss_pred EEEecCcceeEecCChHhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCcee
Confidence 33333222211 2455678899999999999999999999999999999999999999999999999
Q ss_pred Ee-eCCCCccCCCCEEEEEe
Q 000086 737 FK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 737 ~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+ ++.|++|..|++|.+++
T Consensus 651 ~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 651 DVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred eEeeecCcccCCCceEEEeC
Confidence 99 99999999999999874
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-96 Score=897.96 Aligned_cols=446 Identities=34% Similarity=0.583 Sum_probs=414.9
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIV 124 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~Ii 124 (2304)
..|+||||||||++|+|++|+|.++|++| |+++..+| ..+.|...||++|.++.+ .....|+++|.|+
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~T---------VAIys~ED--~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII 73 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKT---------VAIYSEED--RLSLHRFKADESYLIGEGKGPVEAYLSIDEII 73 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceE---------EEEeeccc--cchhhhccccceeeecCCCCchHHhccHHHHH
Confidence 46899999999999999999999998777 56666555 788899999999999854 4457999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++|++.++|||||||||+|||++|++.|+++||.|+||+++.|+.+|||..++..|.++|||+.|.+.
T Consensus 74 ~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~------------ 141 (1149)
T COG1038 74 RIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTD------------ 141 (1149)
T ss_pred HHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999664
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~ 280 (2304)
.++.+.+++.++++++|||+|||++.||||+|||+|.++++|.++++++.+|+. ++.++||+|++++
T Consensus 142 ---------~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~p 212 (1149)
T COG1038 142 ---------GPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENP 212 (1149)
T ss_pred ---------CCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCc
Confidence 137889999999999999999999999999999999999999999999988864 5789999999999
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|+|||+++|.+||++++++||||+||||||++|.+|++.++++++++|++.|+++++.+||.|++||||+++ .+++||
T Consensus 213 kHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd-~~~~fy 291 (1149)
T COG1038 213 KHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVD-EDGKFY 291 (1149)
T ss_pred ceeEEEEeecCCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEc-CCCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 467999
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|||+|||+|+||.+||++||||++++|+.+|.|..|+. | .+.. ..|++....||
T Consensus 292 FIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~-~-----------------------e~gl--p~q~dI~~~G~ 345 (1149)
T COG1038 292 FIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLHT-P-----------------------ELGL--PQQKDIRTHGY 345 (1149)
T ss_pred EEEecCceeeEEeeeeeeechhHHHHHHHHhccCccCC-c-----------------------ccCC--Cccccccccce
Confidence 99999999999999999999999999999999999872 1 1111 14566888999
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
||+||||.|||.++|.|..|+|..++-.++-|||.+. .-..|..|.++|||++-++.+||.|.++|+++|.++|.|++|
T Consensus 346 AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrI 425 (1149)
T COG1038 346 AIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRI 425 (1149)
T ss_pred EEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999888888999884 345788999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCccccccccccchhhhh
Q 000086 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2304)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2304)
+| |+|||+||.+++.||.|.+|+++|+|||.
T Consensus 426 rG-VkTNi~FL~~vl~h~~F~~g~y~T~FId~ 456 (1149)
T COG1038 426 RG-VKTNIPFLEAVLNHPDFRSGRYTTSFIDT 456 (1149)
T ss_pred cc-eecCcHHHHHHhcCcccccCcceeeeccC
Confidence 99 99999999999999999999999999995
|
|
| >KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-87 Score=803.91 Aligned_cols=441 Identities=34% Similarity=0.576 Sum_probs=410.4
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIVEMA 127 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~Ii~iA 127 (2304)
+|||+||||++|+|+.|+|.+++.++ |+++. ..+..+.|..-||++|.++.+ +....|+.++.|+++|
T Consensus 34 ~kvlVANRgEIaIRvFRa~tEL~~~t---------vAiYs--eqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~ia 102 (1176)
T KOG0369|consen 34 NKVLVANRGEIAIRVFRAATELSMRT---------VAIYS--EQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIA 102 (1176)
T ss_pred ceeEEecCCcchhHHHHHHhhhcceE---------EEEEe--ccchhhhhhhccccceecccCCCchhhhhhHHHHHHHH
Confidence 79999999999999999999997776 45555 556899999999999998754 4556899999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+++++|+|||||||+||+.+|+++|.+.|+.|+||+++.+..+|||..+|.++-++|||+.|...
T Consensus 103 k~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTp--------------- 167 (1176)
T KOG0369|consen 103 KKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTP--------------- 167 (1176)
T ss_pred HHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999654
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~rei 283 (2304)
+++++.+|+.+++++.|+|+++|+..||||+|||+|++.++++++|+++.+|+ .++.+|||+|++.+||+
T Consensus 168 ------gPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHI 241 (1176)
T KOG0369|consen 168 ------GPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHI 241 (1176)
T ss_pred ------CCcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCccee
Confidence 34899999999999999999999999999999999999999999999988775 35789999999999999
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
|||+++|.+||++++++||||+||||||++|.+|++.++++++++|...|+++++.+||..++|+||++| +.|++||||
T Consensus 242 EvQllgD~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD-~~g~hYFIE 320 (1176)
T KOG0369|consen 242 EVQLLGDKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVD-QKGRHYFIE 320 (1176)
T ss_pred EEEEecccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEc-cCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 589999999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||+|+||.+||.+|||||+.+|+++|.|..|+.+ |. .|+...++|.+|+
T Consensus 321 vN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~l-------gl----------------------~QdkI~trG~aIQ 371 (1176)
T KOG0369|consen 321 VNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDL-------GL----------------------TQDKITTRGFAIQ 371 (1176)
T ss_pred ecCceeeeeeeeeeeccchhhhhhhhhhcCCCcccc-------cc----------------------cccceeecceEEE
Confidence 999999999999999999999999999999998753 11 5677888999999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
||+|.|||.++|.|.+|+|+-++-..+.|++.+. +--+|..|+++|||++-+|++.|.|.+-++++|.+||.+++|||
T Consensus 372 CRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRG- 450 (1176)
T KOG0369|consen 372 CRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRG- 450 (1176)
T ss_pred EEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcc-
Confidence 9999999999999999999865444456777763 56689999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
++|||+||.++|.+|.|.+|+++|.|||+.
T Consensus 451 VKTNIpFllnvL~n~~Fl~g~~~T~FIDe~ 480 (1176)
T KOG0369|consen 451 VKTNIPFLLNVLTNPVFLEGTVDTTFIDET 480 (1176)
T ss_pred eecCcHHHHHHhcCcceeeeeeeeEEecCC
Confidence 999999999999999999999999999963
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-88 Score=833.65 Aligned_cols=446 Identities=30% Similarity=0.449 Sum_probs=388.6
Q ss_pred ccccccccccCCCCCCcCCccccccCCCC---------CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHH
Q 000086 1593 LLKVTELKFADDSGTWGTPLVLVERSPGL---------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPRED 1663 (2304)
Q Consensus 1593 ~~~~~el~~~~~~~~~~~~l~e~~r~~g~---------n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~ 1663 (2304)
..++.+++||+ | .|.|+....+. ...|+|+|..++ +||+|++++||+|+++||+|+.+.
T Consensus 45 aReRv~~LlD~--G----sf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i------~Gr~~~v~a~D~TV~gGt~~~~~~ 112 (526)
T COG4799 45 ARERVELLLDP--G----SFLELGALAGHRMGGDANELPGDGVVTGIGTI------NGRKVFVFANDFTVKGGTLGEMTA 112 (526)
T ss_pred HHHHHHHHcCC--C----chhhhhhhhhcccccccccCCCCeeEEeeeee------CCeEEEEEEecCceeccccccccc
Confidence 34677777877 6 46665544333 246999999886 999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCc
Q 000086 1664 AFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGE 1743 (2304)
Q Consensus 1664 ~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge 1743 (2304)
+|+.|++++|.++|+|+|||.+||||||| |++-
T Consensus 113 ~Ki~r~~~~A~~~g~P~i~l~dsgGari~--~~v~--------------------------------------------- 145 (526)
T COG4799 113 KKILRAQELAIENGLPVIGLNDSGGARIQ--EGVP--------------------------------------------- 145 (526)
T ss_pred chHHHHHHHHHHcCCCEEEEEcccccccc--cCcc---------------------------------------------
Confidence 99999999999999999999999999999 4433
Q ss_pred eeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHH
Q 000086 1744 TRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNK 1822 (2304)
Q Consensus 1744 ~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~ 1822 (2304)
|++|+|.|....++++..|||||+|+|+|+|||||+++|+|++||+++ ++||||||++||+
T Consensus 146 ------------------~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~ 207 (526)
T COG4799 146 ------------------SLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKA 207 (526)
T ss_pred ------------------ccccchHHHHHHHHhccCCCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHh
Confidence 333444444444555555899999999999999999999999999999 7999999999999
Q ss_pred hhcccccccccccCcceeecc-cCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccccC---
Q 000086 1823 LLGREVYSSHMQLGGPKIMAT-NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE--- 1894 (2304)
Q Consensus 1823 ~lG~~vy~s~~~lGG~~i~~~-nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~--- 1894 (2304)
++|++| +.++|||+++|++ +|++|++++||.++++.+|+||||||+++.+++|+.++.|+|+++. +++|.
T Consensus 208 vtGe~V--~~e~LGGa~vh~~~sGva~~~a~dd~~Ai~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~ 285 (526)
T COG4799 208 VTGEEV--SAEELGGAQVHARKSGVADLLAEDDEDAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPR 285 (526)
T ss_pred hcCcEe--ehhhccchhhhcccccceeeeecCHHHHHHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCC
Confidence 999999 7789999999996 5999999999999999999999999999999999877777777654 56887
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCcccccc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVV 1974 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~ 1974 (2304)
.+||+|++|.+ +||.+||+|++++||+++|||||||+|+|||||||+++
T Consensus 286 ~pYDvrevI~r-----------l~D~~~F~E~~~~~a~~iV~GfaRi~G~pVGiIANqp~-------------------- 334 (526)
T COG4799 286 KPYDVREVIAR-----------LVDDGEFLEFKAGYAKNIVTGFARIDGRPVGIIANQPR-------------------- 334 (526)
T ss_pred ccccHHHHHHH-----------hcCCccHHHHHhhhCcceEEEEEEECCEEEEEEecCcc--------------------
Confidence 99999999998 79999999999999999999999999999999999765
Q ss_pred ccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCch
Q 000086 1975 PQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2054 (2304)
Q Consensus 1975 ~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GG 2054 (2304)
+.||+|++++|.|+||||++|++|+||||+|+|||||++|+++|++||+|+||++++|+++++||+|++|+ +++|||
T Consensus 335 -~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~--rkayGg 411 (526)
T COG4799 335 -HLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVIT--RKAYGG 411 (526)
T ss_pred -ccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEe--cccccc
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999 678999
Q ss_pred hhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 000086 2055 AWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQI 2133 (2304)
Q Consensus 2055 a~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 2133 (2304)
+|.+|+++ +++++ +||||+|+++||+|||||.|+||++ ++.|.+. .++++.+++
T Consensus 412 a~~~M~~~~~~~~~--~~AwP~a~iaVMG~egAv~i~~~k~--l~~~~~~-------------------~~~~~~~~~-- 466 (526)
T COG4799 412 AYYVMGGKALGPDF--NYAWPTAEIAVMGPEGAVSILYRKE--LAAAERP-------------------EEREALLRK-- 466 (526)
T ss_pred eeeeecCccCCCce--eEecCcceeeecCHHHHHHHHHHHH--hhcccCc-------------------hhHHHHHHH--
Confidence 99999988 88888 9999999999999999999999965 3333321 111222222
Q ss_pred HHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHH
Q 000086 2134 KAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2134 ~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l 2188 (2304)
+++.+|.+.+..|..+++.|+||+||+|++||..|..+|++-.
T Consensus 467 ------------~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~ 509 (526)
T COG4799 467 ------------QLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALA 509 (526)
T ss_pred ------------HHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 3455666666678899999999999999999999998887754
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-85 Score=840.61 Aligned_cols=483 Identities=34% Similarity=0.559 Sum_probs=452.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|+++|++||+||++++ +| +++.+.++.++++||+++.+|+..+.++|+|++.|+++
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V---------~v--~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~ 69 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTV---------AV--YSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDV 69 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE---------EE--eccccccccchhhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 68999999999999999999999999874 44 44667899999999999999988888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~------------- 136 (499)
T PRK08654 70 AKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEE------------- 136 (499)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998751
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
.+.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+..+. ..+++|||+|+++++|
T Consensus 137 --------~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ 208 (499)
T PRK08654 137 --------GIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRH 208 (499)
T ss_pred --------CCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcE
Confidence 1578999999999999999999999999999999999999999999876432 3467999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++||+++|++|+++++++|+|++||+|||+++++|++.++++++++|.+.|.++++++||.|++||||+++ +++|||+
T Consensus 209 ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yfl 286 (499)
T PRK08654 209 IEIQILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFL 286 (499)
T ss_pred EEEEEEEcCCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEE
Confidence 99999999999999999999999999999999999988999999999999999999999999999999997 7899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|++||++||+|++++|+++|+|.|++. .+..+.++||+|
T Consensus 287 EiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~l~~--------------------------------~~~~~~~~g~ai 334 (499)
T PRK08654 287 EMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEELSF--------------------------------KQEDITIRGHAI 334 (499)
T ss_pred EEECCCCCCCceeehhhCCCHHHHHHHHhcCCCCCC--------------------------------cccccccceEEE
Confidence 999999999999999999999999999999999863 234456789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+||||||||..+|.|++|+|+.+.+|++++|+++.++..|..++++|||++||||+||+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g- 413 (499)
T PRK08654 335 ECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG- 413 (499)
T ss_pred EEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhh--hhhhhc---c---CCCCchhHHHhhHHHHHHHhhhhhhcccccccccC
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSR--IAMRVR---A---ERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKG 594 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~--~~~~~~---~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g 594 (2304)
++||++||++||++|+|++|+++|+|||++ |.++++ . ++|+ +++++|++..+++....+..+.|.+.+++|
T Consensus 414 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (499)
T PRK08654 414 VKTNIPFHKAVMENENFVRGNLHTHFIEEETTILEEMKRYALEEEEREK-TLSEKFFPGNKKVAAIAAAVNAYISSAKKD 492 (499)
T ss_pred ccCCHHHHHHHhCCHhhcCCCccchhhhcCHHHHHHHHHHhhhcccccc-hHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 877765 3 4555 889999999999999999999999999999
Q ss_pred CCC
Q 000086 595 QIP 597 (2304)
Q Consensus 595 ~~~ 597 (2304)
|-.
T Consensus 493 ~~~ 495 (499)
T PRK08654 493 NEE 495 (499)
T ss_pred ccc
Confidence 854
|
|
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-84 Score=798.25 Aligned_cols=442 Identities=38% Similarity=0.638 Sum_probs=419.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|++|++++|+|++||++++ +++++.+.++.|.++||+++++++....++|+|++.|+.+
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tv-----------av~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~ 69 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETV-----------AVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAA 69 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEE-----------EEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHH
Confidence 68999999999999999999999998884 5555777888999999999999987888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|+|||||||+|||+.|++.|++.|+.|+||++++++.++||+.+|++++++|||++||+. +
T Consensus 70 a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~-~------------ 136 (449)
T COG0439 70 AEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSD-G------------ 136 (449)
T ss_pred HHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCC-C------------
Confidence 999999999999999999999999999999999999999999999999999999999999999884 1
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC---CC-cEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GS-PIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~---~~-~i~VEeyI~g~re 282 (2304)
.+.+.+|+.+.+++|||||||||+.|+||+|||+|++.+||.++|.+++++.. ++ .+++|||+++++|
T Consensus 137 --------~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rh 208 (449)
T COG0439 137 --------AVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRH 208 (449)
T ss_pred --------CcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCce
Confidence 15678999999999999999999999999999999999999999999998875 44 4999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++|+++|++|+++++++|||++||||||+++++|++.++++.+.+|.+.++++++++||.|++|+||+++. +++|||+
T Consensus 209 ievqv~gD~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfi 287 (449)
T COG0439 209 IEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFI 287 (449)
T ss_pred EEEEEEEcCcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 6899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+||+||+||++||+||+.+||++|+|.+++. .+.+...+||++
T Consensus 288 EmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~l~~--------------------------------~q~~~~~~g~ai 335 (449)
T COG0439 288 EMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEPLSL--------------------------------KQEDIKFRGHAI 335 (449)
T ss_pred EEecccccCccceehhhhhhHHHHHHHHHcCCCCCC--------------------------------CCCcccccceee
Confidence 999999999999999999999999999999988753 233445569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+|||++|||..+|.|++|.++...+|++++||++.++..|..++++|||++||++++|.+|++|+.+|.+||++++|+|
T Consensus 336 e~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G- 414 (449)
T COG0439 336 ECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDG- 414 (449)
T ss_pred eceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2304)
++||++|++.++++++|.+|+++|+||++.+.
T Consensus 415 ~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 415 IKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred ccCChHHHHHHhcChHhhcCCcchhhhhhccc
Confidence 99999999999999999999999999998754
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-82 Score=856.44 Aligned_cols=443 Identities=35% Similarity=0.583 Sum_probs=410.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC---CCCCCccCHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG---TNNNNYANVQLIVEM 126 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~---~~~~sY~dvd~Ii~i 126 (2304)
||||||||++|++++|+|+++||+++ +++++.+..+.|..+||+++.+|.+ ....+|+|++.|+++
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tV-----------av~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~i 69 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTV-----------AIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRV 69 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHH
Confidence 69999999999999999999998885 4455666889999999999999876 335799999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++.+++++|||+|||+.
T Consensus 70 ak~~~iDaI~PGyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~-------------- 135 (1143)
T TIGR01235 70 AKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTD-------------- 135 (1143)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++||||||||+.|+||+|+++|++.+||.++++.+..++ .++.+|||+|+++++|
T Consensus 136 -------~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~re 208 (1143)
T TIGR01235 136 -------GPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRH 208 (1143)
T ss_pred -------cCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999999886553 2468999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++||+++|++|+++++++|||++||+|||+++.+|++.++++++++|.+.|.++++++||.|+++|||++++ +|++|||
T Consensus 209 IeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfI 287 (1143)
T TIGR01235 209 IEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFI 287 (1143)
T ss_pred EEEEEEEeCCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 5789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|++||+++|+|++++|+++|+|.+++.+ ++ | + ..|..+.++||+|
T Consensus 288 EVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~L~~~-~~----~-------------------~--~~q~~~~~~g~ai 341 (1143)
T TIGR01235 288 EVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLPTP-QL----G-------------------V--PNQEDIRTNGYAI 341 (1143)
T ss_pred EeecCCCcchhHHHHHhCcHHHHHHHHHHcCCCCCcc-cc----C-------------------C--CcccccCCCcEEE
Confidence 9999999999999999999999999999999998731 00 1 1 1456677889999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+||||+|||.++|.|++|+|..+.+|+++|||++.+ ..+|..|+++|||+++|+|+||.||++|+++|.+||+++.|+|
T Consensus 342 ~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~g 421 (1143)
T TIGR01235 342 QCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRG 421 (1143)
T ss_pred EEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEEC
Confidence 999999999999999999999999999999999987 5589999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
++||++||+++|.||+|++|+++|+|||++
T Consensus 422 -v~tn~~~l~~~l~~~~f~~~~~~t~~~~~~ 451 (1143)
T TIGR01235 422 -VKTNIPFLENVLGHPKFLDGSYDTRFIDTT 451 (1143)
T ss_pred -ccCCHHHHHHHhcCHhhcCCCccchhhhcC
Confidence 999999999999999999999999999985
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-80 Score=839.28 Aligned_cols=448 Identities=34% Similarity=0.567 Sum_probs=414.1
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000086 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2304)
Q Consensus 45 ~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~I 123 (2304)
++||+||||||||++|++++|+|+++|++++ ++++|.+.++++..+||+++.+|++ .+..+|+|++.|
T Consensus 2 ~~~~kkvLianrGeiavri~raa~elGi~~V-----------av~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~I 70 (1146)
T PRK12999 2 MKKIKKVLVANRGEIAIRIFRAATELGIRTV-----------AIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEI 70 (1146)
T ss_pred CCcccEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHH
Confidence 4679999999999999999999999998874 4455777889999999999999875 335799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
+++|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 71 i~iAk~~~iDaI~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~---------- 140 (1146)
T PRK12999 71 IRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEG---------- 140 (1146)
T ss_pred HHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999997641
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g 279 (2304)
.+.+.+++.++++++||||||||+.|+||+|+++|++.+||.++++.+..++. .+++++|+|+++
T Consensus 141 -----------~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 141 -----------PIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred -----------CCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 16789999999999999999999999999999999999999999998776532 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
++|++||+++|++|+++++++|+|++||+|||+++.+|+..++++++++|.+.|.++++++||.|++|+||++++ +|+|
T Consensus 210 ~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~ 288 (1146)
T PRK12999 210 PRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNF 288 (1146)
T ss_pred CeEEEEEEEEECCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCE
Confidence 999999999999999999999999999999999999999889999999999999999999999999999999994 5689
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||+|||||+|++|+++|+++|+|++++|+++|+|.|++.++. |+ +.|..+.++|
T Consensus 289 yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G~~l~~~~~-----~~---------------------~~q~~~~~~g 342 (1146)
T PRK12999 289 YFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGATLHDLEI-----GI---------------------PSQEDIRLRG 342 (1146)
T ss_pred EEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCCCCCCcccc-----cc---------------------ccccccccce
Confidence 999999999999999999999999999999999999864210 10 1244566789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
|+|+||||+|||.++|.|.+|+|+.+..+++++|+++.++. +|..++++|||+++|||++|+||++|+++|.+||++++
T Consensus 343 ~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~ 422 (1146)
T PRK12999 343 YAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR 422 (1146)
T ss_pred eEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcE
Confidence 99999999999999999999999999999999999998876 89999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
|+| ++||++||+++|+||+|++|+++|+|||++
T Consensus 423 i~g-v~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 455 (1146)
T PRK12999 423 IRG-VKTNIPFLENVLKHPDFRAGDYTTSFIDET 455 (1146)
T ss_pred Eec-ccCcHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 999 999999999999999999999999999983
|
|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-76 Score=750.35 Aligned_cols=462 Identities=32% Similarity=0.523 Sum_probs=421.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++|+++|++++ ++++|.+.++.++++||+++.+|+.+. .+|.|.+.|+++
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v-----------~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~ 68 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSV-----------AIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNL 68 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHH
Confidence 68999999999999999999999998874 444477788999999999999987654 899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+|||||.+|++.+++.|++.|++|+||++++++.++||..++++++++|||+|||+.
T Consensus 69 a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~-------------- 134 (472)
T PRK07178 69 AVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSE-------------- 134 (472)
T ss_pred HHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++||||||||+.|+||+|+++|++++||.++++.+..+. ...++|+|+|+++++|
T Consensus 135 -------~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~e 207 (472)
T PRK07178 135 -------GNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKH 207 (472)
T ss_pred -------cCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999998775542 2457999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|++++|++|+++++++|+|++|++|||+++.+|++.++++++++|.+.|.++++++||.|+++|||++++ +|++||+
T Consensus 208 iev~v~~d~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~i 286 (472)
T PRK07178 208 IEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFM 286 (472)
T ss_pred EEEEEEEECCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|+++|+++|+|++++++++++|.|++. .+....++||+|
T Consensus 287 EiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 334 (472)
T PRK07178 287 EMNTRVQVEHTITEEITGIDIVREQIRIASGLPLSY--------------------------------KQEDIQHRGFAL 334 (472)
T ss_pred EEeCCcCCCccceeeeeCcCHHHHHHHHHCCCCCCC--------------------------------ccccCCcceEEE
Confidence 999999999999999999999999999999999863 223456679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|||..+|.|++|+|..+.+|++++||+++.+.+|..|+++|||++||||++|+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g- 413 (472)
T PRK07178 335 QFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQG- 413 (472)
T ss_pred EEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhhc--cCCCCchhHHHhhHHHHH
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVR--AERPPWYLSVVGGALYKA 576 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~--~~~~~~~~~~~~~a~~~~ 576 (2304)
++||++||++||.+|+|++|+++|+|||++ .+.+. ...+...++++++|+..+
T Consensus 414 ~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (472)
T PRK07178 414 VKTTIPYYQEILRNPEFRSGQFNTSFVESH-PELTNYSIKRKPEELAAAIAAAIAA 468 (472)
T ss_pred ccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhhhcCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 44432 223333444555555444
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-75 Score=741.41 Aligned_cols=446 Identities=34% Similarity=0.557 Sum_probs=413.7
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHH
Q 000086 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIV 124 (2304)
Q Consensus 45 ~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii 124 (2304)
.++|+||||+|+|++|++++++||++||+++ +++++.+.++++.++||+++.+++.....+|.|.+.|+
T Consensus 2 ~~~~~~vLi~~~geia~~ii~aa~~lG~~~v-----------~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~ 70 (467)
T PRK12833 2 PSRIRKVLVANRGEIAVRIIRAARELGMRTV-----------AACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAIL 70 (467)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHH
Confidence 3689999999999999999999999999874 44446678889999999999887667778999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 71 ~~a~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~------------ 138 (467)
T PRK12833 71 AAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSD------------ 138 (467)
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~ 280 (2304)
..+.+.+++.++++++||||||||..|+||+|+++|++.+||.++++.+..+. ....+|||+|++++
T Consensus 139 ---------~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 139 ---------GVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred ---------cCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 01678999999999999999999999999999999999999999998876543 24579999999988
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|++|++++|++ ++++++.|+|++||+|||+++++|++.++++..++|.+.|.++++++||+|++||||++++++|++|
T Consensus 210 ~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~ 288 (467)
T PRK12833 210 RHIEVQILGDGE-RVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFY 288 (467)
T ss_pred EEEEEEEEeCCC-cEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEE
Confidence 999999999986 6889999999999999999999999889999999999999999999999999999999986568899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|||+|||+|++|+++++++|+|++++++++++|.|++. .+..+.++||
T Consensus 289 ~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~ 336 (467)
T PRK12833 289 FIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLRF--------------------------------AQGDIALRGA 336 (467)
T ss_pred EEEEECCCCcchhhhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccCcceE
Confidence 99999999999999999999999999999999999862 2234556799
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
++++||++|||..+|.|++|+|+.+.++.+|||++++.+..|..|+++|||++||||++|+||++|+++|.+||+++.|+
T Consensus 337 ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~ 416 (467)
T PRK12833 337 ALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRID 416 (467)
T ss_pred EEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCccccccccccchhhhhhhhhh
Q 000086 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556 (2304)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~ 556 (2304)
| ++||++||++||.+|+|++|+++|+|||+++++.
T Consensus 417 g-~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 451 (467)
T PRK12833 417 G-MKTTAPLHRALLADADVRAGRFHTNFLEAWLAEW 451 (467)
T ss_pred C-ccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhh
Confidence 9 8999999999999999999999999999976554
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=738.62 Aligned_cols=446 Identities=32% Similarity=0.524 Sum_probs=413.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++||++|++++ +++++.+.++.++++||+++.+|+.+ ..+|.|.+.|+++
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v-----------~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~ 68 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSV-----------AIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEI 68 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHH
Confidence 68999999999999999999999999884 44446667899999999999998755 4889999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+||||||+.+|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 69 a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~------------- 135 (478)
T PRK08463 69 AKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEK------------- 135 (478)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999997650
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
....+.+++.++++++||||||||+.|+||+||++|++.+||..+++.+..+ .....++||+|+++++|
T Consensus 136 -------~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~ 208 (478)
T PRK08463 136 -------LNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRH 208 (478)
T ss_pred -------cCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeE
Confidence 0035788999999999999999999999999999999999999999876432 34568999999999999
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|++|++++++.|+|++|++|||+++.+|++.+++++.++|.+.|.++++++||.|++|+||++++ +|++||+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~i 287 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFM 287 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6889999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++|+++|++||+|++++++++++|.+++. .+..+.++||+|
T Consensus 288 EiN~R~~~~~~~te~~tGidlv~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (478)
T PRK08463 288 EMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILDL--------------------------------EQSDIKPRGFAI 335 (478)
T ss_pred EEECCcCCCcceeeHhhCCCHHHHHHHHHcCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999998752 123345679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||+||||...|.|++|+|..+..+..+++|+++.+..|..++++|||++|++|++|+||++|+++|.++|+++.|+|
T Consensus 336 ~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g- 414 (478)
T PRK08463 336 EARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDG- 414 (478)
T ss_pred EEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhhc
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVR 558 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~ 558 (2304)
++||++||+.+|.+|+|++|+++|+|||+++++.+.
T Consensus 415 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 450 (478)
T PRK08463 415 IRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLE 450 (478)
T ss_pred ccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhcc
Confidence 999999999999999999999999999998887764
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-73 Score=723.41 Aligned_cols=447 Identities=22% Similarity=0.270 Sum_probs=367.7
Q ss_pred cccccccccCCCCCCcCCccccccCCCCC-------ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSPGLN-------NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1666 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~g~n-------~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~ 1666 (2304)
.++.+++||+ |+ +|.|+....|.+ .+|||++..++ +||+|+|++||+||++||+|+..++|+
T Consensus 85 ReRI~~LlD~--gS---~F~El~~lag~~~y~~~~~~dgVVtG~G~V------~Gr~V~v~a~D~tv~GGs~g~~~~~Ki 153 (569)
T PLN02820 85 RERIDRLLDP--GS---PFLELSQLAGHELYGEDLPSGGIVTGIGPV------HGRLCMFVANDPTVKGGTYYPITVKKH 153 (569)
T ss_pred HHHHHHHcCC--CC---CeEEchhhccCCcccccCCCCeEEEEEEEE------CCEEEEEEEECCCccCCCCCHHHHHHH
Confidence 3666778887 51 266665444432 37899999876 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceee
Q 000086 1667 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRW 1746 (2304)
Q Consensus 1667 ~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~ 1746 (2304)
.|++++|.+.++|+|+|.+||||||+.+++.+++. .+++.+|...
T Consensus 154 ~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~-----------~~~g~if~~~------------------------ 198 (569)
T PLN02820 154 LRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDR-----------DHFGRIFYNQ------------------------ 198 (569)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcCCcccccccchH-----------hHHHHHHHHH------------------------
Confidence 99999999999999999999999997656665541 1222232211
Q ss_pred EEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhc
Q 000086 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLG 1825 (2304)
Q Consensus 1747 ~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG 1825 (2304)
.+.|+ ..||+||+|+|+|+|||||.+.++|++||+++ +.|+|+||++|+.++|
T Consensus 199 ----------------~~ls~----------~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~G 252 (569)
T PLN02820 199 ----------------ARMSS----------AGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATG 252 (569)
T ss_pred ----------------HHHhC----------CCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcC
Confidence 11111 12799999999999999999999999999976 7899999999999999
Q ss_pred ccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCC---------CCCCcCCCCCCCCCCCccccC-
Q 000086 1826 REVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIG---------GALPIISPLDPPDRPVEYLPE- 1894 (2304)
Q Consensus 1826 ~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~---------~~~p~~~~~d~~~r~~~~~P~- 1894 (2304)
+++ ++++|||+++|. .||++|++++||.+++..+|+||||||.++. ..+|..+|.++.++...++|.
T Consensus 253 e~v--~~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~ 330 (569)
T PLN02820 253 EEV--SAEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPAD 330 (569)
T ss_pred ccc--CHHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCC
Confidence 998 999999999999 6999999999999999999999999998763 111222233334456778998
Q ss_pred --CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCcccc
Q 000086 1895 --NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHER 1972 (2304)
Q Consensus 1895 --~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~ 1972 (2304)
++||+|++|++ ++|++||+|+++.||+++|||+|||+|+|||||||
T Consensus 331 ~~~~yD~r~vi~~-----------ivD~~sf~E~~~~~g~~iVtG~aRi~G~~VgvvAn--------------------- 378 (569)
T PLN02820 331 HKQSFDVRSVIAR-----------IVDGSEFDEFKKNYGTTLVTGFARIYGQPVGIIGN--------------------- 378 (569)
T ss_pred CCCCCCHHHHHHH-----------hcCCceeEEecccCCCcEEEEEEEECCEEEEEEEE---------------------
Confidence 89999999998 79999999999999999999999999999999999
Q ss_pred ccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCC
Q 000086 1973 VVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2052 (2304)
Q Consensus 1973 ~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~ 2052 (2304)
+|+|++++++|++|||++|++++||||+|+||+||++|.++|..|++++|+++++|+++++||+|++|+ |+++
T Consensus 379 -----~g~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~--g~a~ 451 (569)
T PLN02820 379 -----NGILFTESALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIV--GGSF 451 (569)
T ss_pred -----CCccCHHHHHHHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEE--CCcc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999 4556
Q ss_pred chhhhhc-ccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 000086 2053 GGAWVVV-DSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQ 2131 (2304)
Q Consensus 2053 GGa~vv~-~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~ 2131 (2304)
||+|.+| ++.+++|+ +||||+|++|||+||++++|.|+++.. +..+.+++..+++.+++++
T Consensus 452 G~g~~aM~g~~~~~d~--~~awp~A~i~vmg~e~aa~il~~~e~~----------------~~~~~~~~~~~~~~~~~~~ 513 (569)
T PLN02820 452 GAGNYGMCGRAYSPNF--LFMWPNARIGVMGGAQAAGVLAQIERE----------------NKKRQGIQWSKEEEEAFKA 513 (569)
T ss_pred hHHHHHhcCcCCCCCE--EEECCCCeEEecCHHHHHHHHHHHHhh----------------hhhhccccCCccHHHHHHH
Confidence 6555555 56699999 999999999999999999999987611 0111111222233334444
Q ss_pred HHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHH
Q 000086 2132 QIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2132 ~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r 2186 (2304)
+++++ .+.+.+|+..++.|.||+||+|++||+.|++.|+.
T Consensus 514 ~~~~~---------------~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~ 553 (569)
T PLN02820 514 KTVEA---------------YEREANPYYSTARLWDDGVIDPADTRRVLGLCLSA 553 (569)
T ss_pred HHHHH---------------HHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHH
Confidence 44332 22244567789999999999999999999999975
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-74 Score=734.27 Aligned_cols=423 Identities=30% Similarity=0.434 Sum_probs=352.9
Q ss_pred CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCchhhhhh
Q 000086 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA--RIGVAEEVKA 1699 (2304)
Q Consensus 1622 n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GA--Ri~~~e~v~~ 1699 (2304)
..+|+|++..++ +||+|+|+++|+||++||+|+.+++|+.++.++|.++|+|+|+|.+|||+ ||+ |++.+
T Consensus 43 p~~gvvtG~G~I------~G~~v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~--eg~~~ 114 (493)
T PF01039_consen 43 PGDGVVTGIGKI------NGRPVVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQ--EGVES 114 (493)
T ss_dssp TTTTEEEEEEEE------TTEEEEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGG--GHHHH
T ss_pred CCCcEEEEEEee------CCeeEEEEEeccceecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccc--hhhhh
Confidence 357899999876 99999999999999999999999999999999999999999999999999 887 88888
Q ss_pred hhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccccccc
Q 000086 1700 CFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKE 1779 (2304)
Q Consensus 1700 l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ 1779 (2304)
+++++ . |..++++++..
T Consensus 115 l~~~g------------~---------------------------------------------------i~~~~~~~~~~ 131 (493)
T PF01039_consen 115 LMGMG------------R---------------------------------------------------IFRAIARLSGG 131 (493)
T ss_dssp HHHHH------------H---------------------------------------------------HHHHHHHHHTT
T ss_pred hhhhH------------H---------------------------------------------------HHHHHHHHhcC
Confidence 76554 1 12223333445
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEG 1857 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~ 1857 (2304)
||+|++++|+|+|||||+++++|++||+++ +.|+|+||++|+.++|+++ +++++||+++|. +||++|++++||+++
T Consensus 132 iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~vv~~~~Ge~~--~~~~lgG~~~h~~~sG~~d~v~~de~~a 209 (493)
T PF01039_consen 132 IPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPRVVESATGEEV--DSEELGGADVHAAKSGVVDYVVDDEEDA 209 (493)
T ss_dssp S-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTHHHHHHHHSSCT--SHHHHHBHHHHHHTSSSSSEEESSHHHH
T ss_pred CCeEEEEccccccchhhcccccCccccCccceEEEeccccccccccCccc--cchhhhhhhhhcccCCCceEEEechHHH
Confidence 899999999999999999999999999999 9999999999999999888 889999999986 899999999999999
Q ss_pred HHHHHHHHhcCC---CCCCCCCCcCCCCCCCCCC---CccccC---CCCChHHHhhcccCCCCCcccccccCCCceeccc
Q 000086 1858 ISAILKWLSYVP---PHIGGALPIISPLDPPDRP---VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE 1928 (2304)
Q Consensus 1858 ~~~i~~~LsylP---~~~~~~~p~~~~~d~~~r~---~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~ 1928 (2304)
++.+++||+|+| .++..++|..++.|++++. ..++|. ++||+|++|++ ++|.++|+|+++
T Consensus 210 ~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~~~P~~~~~~yD~r~ii~~-----------i~D~~~f~E~~~ 278 (493)
T PF01039_consen 210 LAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDSIIPDDRRRPYDMRDIIAR-----------IVDDGSFFELKP 278 (493)
T ss_dssp HHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHGCS-SSTTS---HHHHHHH-----------HSGGGBEEEEST
T ss_pred HHHHHHhhcccccccccccCCCcccccCCCcccccccccccccccCCCCCcceeeEe-----------cccCCCceeccc
Confidence 999999999999 4444578888888888874 467887 99999999998 799999999999
Q ss_pred CCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEec
Q 000086 1929 GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILAN 2008 (2304)
Q Consensus 1929 ~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d 2008 (2304)
+||+++|||+|||+|+|||||||+++ +.+|+|++++++|++|||++|++|+||||+|+|
T Consensus 279 ~~g~~~vtg~arl~G~pVGiian~~~---------------------~~~G~~~~~~a~K~arfi~lcd~~~iPlv~l~d 337 (493)
T PF01039_consen 279 GYGKNIVTGFARLGGRPVGIIANNPR---------------------QRAGALDPDGARKAARFIRLCDAFNIPLVTLVD 337 (493)
T ss_dssp TSSTTEEEEEEEETTEEEEEEEE-TT---------------------CGGGEB-HHHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred cccCCeEEeeeeeCCcceEEEEeccc---------------------cccccCChHHHHHHHHHHHHHHhhCCceEEEee
Confidence 99999999999999999999999654 237899999999999999999999999999999
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchh
Q 000086 2009 WRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2009 ~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
||||++|.++|+.|++++||++++|+++++||+|++|+ ++++||+|++|+++ +++|+ +||||+|++|||+||++|
T Consensus 338 tpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~--~~~~Gga~~am~~~~~~~~~--~~Awp~a~~~vm~~e~a~ 413 (493)
T PF01039_consen 338 TPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIV--RKAYGGAYYAMCGRGYGPDF--VFAWPTAEIGVMGPEGAA 413 (493)
T ss_dssp ECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEE--EEEEHHHHHHTTGGGGTTSE--EEEETT-EEESS-HHHHH
T ss_pred cccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEe--CCccCcchhhhcccccchhh--hhhhhcceeeecChhhhh
Confidence 99999999999999999999999999999999999999 68899999999887 88889 899999999999999999
Q ss_pred hhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCc
Q 000086 2088 EIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVI 2167 (2304)
Q Consensus 2088 ~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~I 2167 (2304)
+|+|+++.....+++ .+..+..+++++++++ ...++.++++.|.|
T Consensus 414 ~i~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~ 458 (493)
T PF01039_consen 414 SILYRDELEAAEAEG--------------------ADPEAQRAEKIAEYED---------------ELSSPYRAASRGYV 458 (493)
T ss_dssp HHHTHHHHHHSCHCC--------------------HSHHHHHHHHHHHHHH---------------HHSSHHHHHHTTSS
T ss_pred eeeehhhhhhhhccc--------------------chhHHHHHHHHHHHHH---------------hcCCHHHHHhcCCC
Confidence 999998844333322 0111123333433333 33356789999999
Q ss_pred ceecCccchHHHHHHHHHHHH
Q 000086 2168 KEVVDWDKSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2168 d~vi~~~~tR~~~~~~L~r~l 2188 (2304)
|+||+|++||++++..|.--.
T Consensus 459 D~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 459 DDIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp SEESSGGGHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999887543
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=715.55 Aligned_cols=416 Identities=26% Similarity=0.403 Sum_probs=363.4
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
.+|+|++..++ +||+|+|+++||||++||+|+.+++|+.+++++|.++++|+|+|.+||||||+ |++.++++
T Consensus 69 ~dgvVtG~G~v------~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~--eg~~~l~~ 140 (512)
T TIGR01117 69 AEGVVTGYGTI------DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQ--EAVDALKG 140 (512)
T ss_pred CceEEEEEEEE------CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCcc--ccchhhhh
Confidence 47899999876 99999999999999999999999999999999999999999999999999998 77777643
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
++++|.. +.+.||. ||+
T Consensus 141 ------------~~~~~~~----------------------------------------~~~~s~~-----------iP~ 157 (512)
T TIGR01117 141 ------------YGDIFYR----------------------------------------NTIASGV-----------VPQ 157 (512)
T ss_pred ------------HHHHHHH----------------------------------------HHHHcCC-----------CcE
Confidence 2333310 0112222 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecCc-ceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~~-~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++++|+|+||+||.+++||++||++++ .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.|+++.
T Consensus 158 Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~v--~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~ 235 (512)
T TIGR01117 158 ISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEEV--TAEQLGGAMAHNSVSGVAHFIAEDDDDCIML 235 (512)
T ss_pred EEEEecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCccc--chhhcchHHHhccccceeEEecCChHHHHHH
Confidence 9999999999999999999999999985 799999999999999999 999999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCe
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1933 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~ 1933 (2304)
+|+||||||.+..+++|..++.|++.+. ..++|. ++||+|++|+. |+|+++|+|+++.||++
T Consensus 236 ~r~~ls~lp~~~~~~~p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~-----------l~D~~sf~El~~~~g~~ 304 (512)
T TIGR01117 236 IRRLLSFLPSNNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITA-----------IVDNGDYLEVQPYYAPN 304 (512)
T ss_pred HHHHHHhCCcCCCCCCCCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHH-----------hCCCCceEEeeccCCCc
Confidence 9999999999988888866665666543 356888 89999999997 79999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCC
Q 000086 1934 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 2013 (2304)
Q Consensus 1934 vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~ 2013 (2304)
+|||+|||+|+||||||||+++. ||+|++++++|++||+++|++++||||+|+||+||+
T Consensus 305 vVtG~gri~G~~V~vvAnd~~~~---------------------~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G~~ 363 (512)
T TIGR01117 305 IITCFARINGQSVGIIANQPKVM---------------------AGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFL 363 (512)
T ss_pred EEEEEEEECCEEEEEEEeccccc---------------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcCcc
Confidence 99999999999999999976533 899999999999999999999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2014 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2014 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
+|..+|+.|++++++++++++++++||+|++|+ |+++||+|.+|+++ +++|+ +||||+|+++||+||++++|+||
T Consensus 364 ~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~--g~~~Gga~~am~~~~~~~d~--~~a~p~a~~~v~~pe~a~~i~~~ 439 (512)
T TIGR01117 364 PGVNQEYGGIIRHGAKVLYAYSEATVPKVTIIT--RKAYGGAYLAMCSKHLGADQ--VYAWPTAEIAVMGPAGAANIIFR 439 (512)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCCchHHHHHhccccCCCCE--EEEcCCCeEeecCHHHHHHHHhh
Confidence 999999999999999999999999999999999 67799999999765 89999 99999999999999999999998
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
++. ++ ..+++ ++..+++ .+|.+...+|.+++++|+||+||+
T Consensus 440 ~~l-------------------~~---~~~~~--~~~~~~~---------------~~~~~~~~~~~~~a~~g~vD~VI~ 480 (512)
T TIGR01117 440 KDI-------------------KE---AKDPA--ATRKQKI---------------AEYREEFANPYKAAARGYVDDVIE 480 (512)
T ss_pred hhc-------------------cc---ccCHH--HHHHHHH---------------HHHHHhhcCHHHHHhcCCCCeeEC
Confidence 761 11 01111 1112222 233344557889999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~r 2186 (2304)
|++||.+++..|+.
T Consensus 481 P~~tR~~l~~~l~~ 494 (512)
T TIGR01117 481 PKQTRPKIVNALAM 494 (512)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999975
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-71 Score=703.13 Aligned_cols=441 Identities=35% Similarity=0.604 Sum_probs=410.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|||||||+|+|+.|++++++||++|++++ +++++.+.++++.++||+++.+++..+.++|.|.+.|+++
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v-----------~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~ 69 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETV-----------AVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISA 69 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEE-----------EEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHH
Confidence 58999999999999999999999999985 4445666888999999999998776777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||||+.+|+..++..+++.|+.|+||+++++..++||..++++++++|||+|||+.
T Consensus 70 ~~~~~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~-------------- 135 (447)
T PRK05586 70 TVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSE-------------- 135 (447)
T ss_pred HHHcCCCEEEcCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++||||||||..|+||+|+++|++.+||.++++.+..+.. .++++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~e 208 (447)
T PRK05586 136 -------GEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKH 208 (447)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeE
Confidence 016788999999999999999999999999999999999999999987765421 357999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|.+|++++++.++|+.++++||+++.+|++.+++++.++|.+.|.++++++||+|+++|||++++ +|++||+
T Consensus 209 i~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~i 287 (447)
T PRK05586 209 IEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFM 287 (447)
T ss_pred EEEEEEECCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+|++|+++++++|+|++++++++++|.|++. .+......||++
T Consensus 288 EvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~a~ 335 (447)
T PRK05586 288 EMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLSI--------------------------------KQEDIKINGHSI 335 (447)
T ss_pred EEECCCCCCccceehhhCCCHHHHHHHHHcCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 122344569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|+|...|.|.+|.++.+.++..++||+++.+..|..++.+|||++|+||++|+||++|++++.+||+++.|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g- 414 (447)
T PRK05586 336 ECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEG- 414 (447)
T ss_pred EEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
++||++||++||.||+|++|+++|+|||+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 415 VNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred ccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 9999999999999999999999999999875
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=689.44 Aligned_cols=442 Identities=34% Similarity=0.588 Sum_probs=410.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|||||||+|+|++|+++++++|++|++|+ +++.+.+.+++++++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv-----------~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~ 69 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTV-----------AVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISA 69 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEE-----------EEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHH
Confidence 68999999999999999999999999985 4444666788999999999999776777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||+|+.+|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~-------------- 135 (449)
T TIGR00514 70 AEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSD-------------- 135 (449)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+..+ ....+++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (449)
T TIGR00514 136 -------GLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRH 208 (449)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeE
Confidence 0167889999999999999999999999999999999999999999876543 23467999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|.+|+++.++.+||+++++++|+++.+|++.+++++.++|.+.+.++++++||+|++||||++++ +|++||+
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~vi 287 (449)
T TIGR00514 209 VEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFM 287 (449)
T ss_pred EEEEEEEcCCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999998889999999999999999999999999999999984 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||++++|++++.++|+|++++++++++|.|++. .+.....+||++
T Consensus 288 EiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (449)
T TIGR00514 288 EMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPLSL--------------------------------KQEDVVVRGHAI 335 (449)
T ss_pred EEECCCCCCcceeehhcCCcHHHHHHHHHCCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999999863 122344569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|||...|.|.+|.+..+.+++.|||++++.+.+|..+++++||++||||++|+||+||++++.+||++++|+|
T Consensus 336 ~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g- 414 (449)
T TIGR00514 336 ECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDG- 414 (449)
T ss_pred EEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2304)
++||++||++||.+++|.+|+++|+|||++++
T Consensus 415 ~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 415 IKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred ccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 99999999999999999999999999999764
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=672.59 Aligned_cols=440 Identities=34% Similarity=0.578 Sum_probs=405.8
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
+.||||||+|+|++|+++|++||++|++|+ +++++.+.+++++++||+++.+|+..+.++|.|.+.|++
T Consensus 2 ~~~k~ili~~~g~~~~~~~~~~~~~G~~~v-----------~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~ 70 (445)
T PRK08462 2 KEIKRILIANRGEIALRAIRTIQEMGKEAI-----------AIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIIS 70 (445)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEE-----------EEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHH
Confidence 458999999999999999999999999985 444566688999999999999988777889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+|+++++|+|+||+|+++|+..+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 71 ~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~------------- 137 (445)
T PRK08462 71 AAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSD------------- 137 (445)
T ss_pred HHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccc
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSR 281 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~r 281 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|+|.+||.++++.+..+ .....+++|+|+++++
T Consensus 138 --------~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~ 209 (445)
T PRK08462 138 --------GALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPR 209 (445)
T ss_pred --------cccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCe
Confidence 1167889999999999999999999999999999999999999999876433 2345799999999889
Q ss_pred eeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEE
Q 000086 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2304)
Q Consensus 282 eieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yf 361 (2304)
|+++++++|..|++++++.++|+++++|+|.++++|+..++++..++|.+.+.++++++||.|++++||++++ +|++||
T Consensus 210 e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~v 288 (445)
T PRK08462 210 HIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYF 288 (445)
T ss_pred EEEEEEEECCCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 568999
Q ss_pred EEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000086 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2304)
Q Consensus 362 LEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gha 441 (2304)
+|||||++++|+++++++|+|++++++++++|.+++.. ....+.||+
T Consensus 289 iEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~l~~~---------------------------------~~~~~~~~a 335 (445)
T PRK08462 289 MEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPSQ---------------------------------ESIKLKGHA 335 (445)
T ss_pred EEEECCcCcCcceehhhhCCCHHHHHHHHHCCCCcccc---------------------------------cccCCceeE
Confidence 99999999999999999999999999999999988631 122356999
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 442 i~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.+|+++|+|. .|.|.+|.+..+.++...+++++..+..|..++.+||+++|++|++|+|+++|+++|.+||++++|+|
T Consensus 336 ~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g 414 (445)
T PRK08462 336 IECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEG 414 (445)
T ss_pred EEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcEEEC
Confidence 99999999985 59999999999888888889999989999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
++||++||+++|.+|+|++|+++|+|||+++
T Consensus 415 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 415 -IKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred -ccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 9999999999999999999999999998763
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=670.28 Aligned_cols=443 Identities=35% Similarity=0.611 Sum_probs=409.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|+.|+++++++|++||+++ ++..+.+.++++.++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv-----------~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~ 69 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTV-----------AVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISA 69 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEE-----------EEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHH
Confidence 68999999999999999999999999985 3434666788889999999988666777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||+|+.+|++.++..|++.|+.|+||+++++..++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~-------------- 135 (451)
T PRK08591 70 AEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSD-------------- 135 (451)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999998999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
..+++.+++.++++++||||||||..|+||+|+++|+|.+||.++++.+..+ .....++||+|+++++|
T Consensus 136 -------~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (451)
T PRK08591 136 -------GPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRH 208 (451)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcE
Confidence 0167889999999999999999999999999999999999999999987643 22457999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++++++|++|++++++.++|+.+++++++++.+|++.++++..++|.+.+.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~vi 287 (451)
T PRK08591 209 IEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFI 287 (451)
T ss_pred EEEEEEEcCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999998889999999999999999999999999999999985 7889999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||++++|++++.++|+|++++++++++|.|++. .+..+.++||++
T Consensus 288 EINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (451)
T PRK08591 288 EMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLSI--------------------------------KQEDIVFRGHAI 335 (451)
T ss_pred EEECCCCccchhhhhhhCCCHHHHHHHHHCCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 112345579999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++|||...|.|++|.+..+.+++.++|++++.+..|..++.++||++|+||++|+|+++|.+++.++|++++|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g- 414 (451)
T PRK08591 336 ECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDG- 414 (451)
T ss_pred EEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEEC-
Confidence 9999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2304)
++||++||++||.+|+|++|+++|+|||++++.
T Consensus 415 ~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 447 (451)
T PRK08591 415 IKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLAL 447 (451)
T ss_pred CCCCHHHHHHHhcCHhhhCCCcccHHHHhhhhc
Confidence 999999999999999999999999999998764
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=628.03 Aligned_cols=438 Identities=26% Similarity=0.364 Sum_probs=374.6
Q ss_pred ccccccccCCCCCCcCCccccccCCCC--------CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHH
Q 000086 1595 KVTELKFADDSGTWGTPLVLVERSPGL--------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1666 (2304)
Q Consensus 1595 ~~~el~~~~~~~~~~~~l~e~~r~~g~--------n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~ 1666 (2304)
++.+|++|+ |+ .|.|.+...|. |..|+|+++..+ +||.|++++||||+++||+.+.+..|+
T Consensus 68 erIdlLld~--gs---~Fie~d~fa~h~m~~~e~~ps~sIvtg~g~i------~gr~~~vianDfTv~ggs~y~i~~kk~ 136 (536)
T KOG0540|consen 68 ERIDLLLDP--GS---PFIELDQFAGHEMYGKEKVPSGSIVTGRGRI------NGRKCFVIANDFTVKGGSYYPITVKKH 136 (536)
T ss_pred hhhhhccCC--CC---cceehhhhhhhhhccccCCCCCceEeccccc------cceEEEEEccCchhcccccchhhHHHH
Confidence 566888887 41 58887777666 577899999764 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceee
Q 000086 1667 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRW 1746 (2304)
Q Consensus 1667 ~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~ 1746 (2304)
.|+.+.|...++|+|||.||||||++ +.+-++- ...-|+|+|+++
T Consensus 137 lr~~e~a~~~~~p~iyL~DSgga~l~--~~~es~~---------d~~~~~~If~n~------------------------ 181 (536)
T KOG0540|consen 137 LRAQEIADNNRLPCIYLVDSGGARLP--RQAESFA---------DSYHFGRIFYNQ------------------------ 181 (536)
T ss_pred hhHHHHHhhcCCCceeEecCccccCc--chhhhcC---------Chhhhheeeeec------------------------
Confidence 99999999999999999999999999 5444430 123378888643
Q ss_pred EEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhc
Q 000086 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLG 1825 (2304)
Q Consensus 1747 ~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG 1825 (2304)
|...||. ||+|++|+|+|+|||||.+++.|.+||+++ +.||++||+.+++++|
T Consensus 182 ---------------n~mss~~-----------ipqis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVka~tn 235 (536)
T KOG0540|consen 182 ---------------NVMSSGN-----------IPQISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVKAATN 235 (536)
T ss_pred ---------------ceeccCC-----------CCceeEEEecccCCceecccccceeEEecCcceEEecCCchhhhhcc
Confidence 2222333 699999999999999999999999999998 6899999999999999
Q ss_pred ccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCC
Q 000086 1826 REVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSC 1897 (2304)
Q Consensus 1826 ~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~y 1897 (2304)
++| +.++|||++.|. .+||+|..+.||.+++...|..++|+|-......+...+.|||+++ ..++|. ++|
T Consensus 236 Eev--sqedlgga~~hc~~sGv~~~~~~~dv~al~~~r~~~~~l~~~~~~~a~~p~~~~p~d~~~~eld~Iv~~~~~~~y 313 (536)
T KOG0540|consen 236 EEV--SQEDLGGADLHCTTSGVADKAAKNDVHALCLLRLKVSNLPLSEIDLAIDPGTWDPPDYDAPELDGIVPLNLTKAY 313 (536)
T ss_pred cee--ehhhcCCcceeeeeccchhhhhhccHHHHHHHHHHHccCCcccccccCCcccCCcccccchhhcccccccccccc
Confidence 999 999999999998 6999999999999999999999999997555544444445677665 457787 999
Q ss_pred ChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccC
Q 000086 1898 DPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQA 1977 (2304)
Q Consensus 1898 D~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~ 1977 (2304)
|+|++|++ ++|.+.|+|++++|++++|||||||+|+||||++|++++.
T Consensus 314 d~r~vi~~-----------iVD~~~f~E~~~~y~~tlvtGfarlnG~tVgIvgnn~kf~--------------------- 361 (536)
T KOG0540|consen 314 DVREVIAR-----------IVDGSRFFEFKPGYGDTLVTGFARLNGRTVGIVGNNPKFA--------------------- 361 (536)
T ss_pred chHhHHHh-----------hcccchhhhhccccccceeeeeeeECCEEEEEeccCchhc---------------------
Confidence 99999998 7889999999999999999999999999999999977655
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhh
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWV 2057 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~v 2057 (2304)
||+++.+++.|.||||++|++++||||+|+|.+|||+|...|..||.|+||++++|.++++||+|++|+ |.++||+|.
T Consensus 362 ~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit--~~syGG~y~ 439 (536)
T KOG0540|consen 362 GGVLFSESAVKGARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIIT--GGSYGGNYA 439 (536)
T ss_pred ccccchhhhhhhHHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEe--cCccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 678999999
Q ss_pred hcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000086 2058 VVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKARE 2137 (2304)
Q Consensus 2058 v~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re 2137 (2304)
|++..+.+|+ +||||+|+|+||+.++|++|.++-.+ ++..+++++.. |
T Consensus 440 m~sr~~~gd~--~yawP~A~IavmG~~~a~~Vi~q~~~----------------------------e~a~~~~~~~~--E 487 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVMGGKQAANVIFQITL----------------------------EKAVALKAPYI--E 487 (536)
T ss_pred ccccccCCce--eEEcccceeeeccccchhhhhhhhhh----------------------------hhhhhhcchHH--H
Confidence 8887799999 99999999999999999999776430 11112222221 2
Q ss_pred HhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHH
Q 000086 2138 KQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2138 ~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l 2188 (2304)
+.-.|+ -..++|..|+||+|.+||..+...|.-.+
T Consensus 488 ~f~npy----------------~a~~Rg~~D~II~p~~tR~vl~~~l~~~~ 522 (536)
T KOG0540|consen 488 KFGNPY----------------YAAARGWDDGIIDPSDTRKVLGLDLQAAA 522 (536)
T ss_pred HhcCcc----------------HHHHhhccccccChhHhhHHHHHHHHHHh
Confidence 224444 46677888889999999999998776543
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-65 Score=696.47 Aligned_cols=439 Identities=33% Similarity=0.559 Sum_probs=406.0
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||||+|+|++|+++|+++|++|++++ ++++|.+..+.++++||+++.+|+.+..++|.|.+.|+++|
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v-----------~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a 69 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSV-----------AVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAA 69 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHH
Confidence 6899999999999999999999999874 44457778899999999999998877788999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+++++|+||||+|+++|+..+++.|++.|+.|+||++++++.++||..+|++++++|||++||+.
T Consensus 70 ~~~~idaIiPG~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~--------------- 134 (1201)
T TIGR02712 70 KKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTG--------------- 134 (1201)
T ss_pred HHHCCCEEEeCCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~rei 283 (2304)
.+++.+++.++++++||||||||..|+||+|+++|++.+|+.++++.+.... .+.++|||+|+++++|+
T Consensus 135 -------lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~ev 207 (1201)
T TIGR02712 135 -------LLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHV 207 (1201)
T ss_pred -------ecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEE
Confidence 1678999999999999999999999999999999999999999999876432 24579999999988999
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+|++++|+.|+++.++.+||++||++||+++++|++.+++++.++|.+.+.++++++||+|+++|||+++++++++||||
T Consensus 208 eV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lE 287 (1201)
T TIGR02712 208 EVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLE 287 (1201)
T ss_pred EEEEEECCCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999889999999999999999999999999999999986568899999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||+|++|+++++++|+|+++++++++.|.+++.- ...+ . ..+.||+++
T Consensus 288 VNpRlq~~~~lte~~tGvDlve~~ir~a~G~~~~~~------------------------~~~~-----~-~~~~g~ai~ 337 (1201)
T TIGR02712 288 VNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELPDFA------------------------SLNI-----S-LTPRGAAIE 337 (1201)
T ss_pred EECCcCcchhhHHHHhCCCHHHHHHHHHcCCCCCcc------------------------cccc-----c-cccceEEEE
Confidence 999999999999999999999999999999987520 0000 0 135799999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000086 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2304)
+|+++|||..+|.|++|.++.+.+++ +++++..+.+|+.|+++||+++|+||++|+||++|+++|.+||++++|+| +
T Consensus 338 ~riyae~p~~~~~p~~G~l~~v~~p~--~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G-~ 414 (1201)
T TIGR02712 338 ARVYAENPAKNFQPSPGLLTDVQFPD--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG-I 414 (1201)
T ss_pred EEEeccCcccCcCCCCceeeEEECCC--eEEEeceecCCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceEEcC-c
Confidence 99999999999999999999888876 58888999999999999999999999999999999999999999999999 9
Q ss_pred ccCHHHHHHhcCccccccccccchhhhhh
Q 000086 524 RTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
.||++||+++|.+|+|++|+++|+|||++
T Consensus 415 ~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 415 ETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred CcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 99999999999999999999999999984
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=589.26 Aligned_cols=444 Identities=35% Similarity=0.575 Sum_probs=400.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|+.|++++++++++||+++ ++.++.+..+.++++||+++.+|+....++|.|.+.|+++
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v-----------~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~ 69 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTV-----------AIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEI 69 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999985 3333556778889999999999876667899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||+|+.+|++.++..+++.|+.++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~-------------- 135 (450)
T PRK06111 70 AKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGIT-------------- 135 (450)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999732
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~----e~~~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+..+++.+.. .....+++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e 208 (450)
T PRK06111 136 -------TNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRH 208 (450)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcE
Confidence 015788999999999999999999999999999999999999999987542 223458999999998899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++++++++.+|+++.++.++|+++++|+++++.+|++.+++++.+++.+.+.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~vi 287 (450)
T PRK06111 209 IEIQLLADTHGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFL 287 (450)
T ss_pred EEEEEEEcCCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999998878899999999999999999999999999999983 5569999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+++++++++.++|+|++++++++++|.|++. .+......++++
T Consensus 288 EiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (450)
T PRK06111 288 EMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSF--------------------------------TQDDIKRSGHAI 335 (450)
T ss_pred EEECCcCCcchhhHHHhCcCHHHHHHHHhcCCCCCC--------------------------------ccccCCcCceEE
Confidence 999999999999999999999999999999998752 112234458899
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
.++++++++. .+.|..|.++.++++..++++++..+..|+.++.++++++|+|+++|+|+++|++++..+++.++|+|
T Consensus 336 ~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g- 413 (450)
T PRK06111 336 EVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG- 413 (450)
T ss_pred EEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEEeC-
Confidence 9999998874 57899999988877777789999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhhhhhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRV 557 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~ 557 (2304)
++||+++|+.||++|+|++|+++|+|||.++.++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (450)
T PRK06111 414 IKTNIPLLLQVLEDPVFKAGGYTTGFLTKQLVKKS 448 (450)
T ss_pred ccCCHHHHHHHhcChhhcCCcccchHHhhhhhhhc
Confidence 99999999999999999999999999999876653
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=398.87 Aligned_cols=254 Identities=20% Similarity=0.287 Sum_probs=220.6
Q ss_pred CCCCCCCccccCCCc-ccchhhhhcccCccCCCCc---chhHHHHHHHHHHHhHhhhCCCCCCCCcCccccccccccCCC
Q 000086 1530 FPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC---EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDS 1605 (2304)
Q Consensus 1530 ~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~ 1605 (2304)
.|+ ++|.|||+|+ .+|++++..|+++||+|+| ..-...+-...+.++|. +...++.+.++|.|.+ +
T Consensus 23 ~~e--~lw~KCp~c~~~~y~~eL~~n~~vcp~c~~h~ri~A~~Ri~~llD~gsf~-------el~~~l~~~dPL~F~d-~ 92 (294)
T COG0777 23 RPE--GLWTKCPSCGEMLYRKELESNLKVCPKCGHHMRISARERLEALLDEGSFE-------ELDSPLEPKDPLKFPD-S 92 (294)
T ss_pred CCC--CceeECCCccceeeHHHHHhhhhcccccCcccccCHHHHHHHhhCCCcce-------ecccCCCcCCcccCCc-c
Confidence 357 9999999987 9999999999999999999 22222221113444443 4447778889999988 7
Q ss_pred CCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEc
Q 000086 1606 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAA 1685 (2304)
Q Consensus 1606 ~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~ 1685 (2304)
++|.++|...+..+|.+++ ||++..++ +|.+++++++||.|+|||||.+.++||.|+.|+|.+.++|+|.+++
T Consensus 93 k~Y~~rL~~a~~~tg~~da-vvtg~g~i------~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~a 165 (294)
T COG0777 93 KKYKDRLEAARKKTGLDDA-VVTGEGTI------NGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSA 165 (294)
T ss_pred hhhHHHHHHHHhhcCCCcc-eEEEeeEE------CCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 8899999999999999887 88888887 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccc
Q 000086 1686 NSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG 1765 (2304)
Q Consensus 1686 s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~ 1765 (2304)
||||||| |++++||||+ +|++.+.++. +.|
T Consensus 166 SGGARMQ--Eg~lSLMQMa---------------ktsaAl~~l~----------ea~----------------------- 195 (294)
T COG0777 166 SGGARMQ--EGILSLMQMA---------------KTSAALKRLS----------EAG----------------------- 195 (294)
T ss_pred CcchhHh--HHHHHHHHHH---------------HHHHHHHHHH----------hcC-----------------------
Confidence 9999999 9999999999 6666666653 111
Q ss_pred ccccccccccccccceEEEEEcCcccch-hhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceeeccc
Q 000086 1766 SGAIAGAYSRAYKETFTLTYVTGRTVGI-GAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1766 SG~iag~~s~ay~~iptis~vtg~t~G~-gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~~n 1844 (2304)
+|+|+|+|+||+|| .|++++|||++|++|++.|+|+||+||++++|+++ |++|+++|++.++
T Consensus 196 --------------lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~L---PegfQ~aEfLleh 258 (294)
T COG0777 196 --------------LPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKL---PEGFQTAEFLLEH 258 (294)
T ss_pred --------------CceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcccC---CcchhhHHHHHHc
Confidence 59999999999999 89999999999999999999999999999999999 9999999999999
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
|++|.+|+ +.|.-..+..+|+.+
T Consensus 259 G~iD~iv~-R~elr~tla~ll~~~ 281 (294)
T COG0777 259 GMIDMIVH-RDELRTTLASLLAKL 281 (294)
T ss_pred CCceeeec-HHHHHHHHHHHHHHh
Confidence 99999996 577777777777665
|
|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=374.86 Aligned_cols=205 Identities=43% Similarity=0.703 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..++++|+++|||++||+. ..+++.+++.++++++||||||||+.|+||+|+++|+|
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~---------------------~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~ 59 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGST---------------------VPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHN 59 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBES---------------------SSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESS
T ss_pred CHHHHHHHHHHCCCCcCCCCC---------------------CCCCCHHHHHHHHHhcCCceEEeecccccccccccccc
Confidence 899999999999999999876 12589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHH
Q 000086 252 DDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~ 327 (2304)
.++|.++++.++.+++ ..+++||+|+++++|++||+++|++|++++++.|||+.|+++||.++++|++.++++.++
T Consensus 60 ~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~ 139 (211)
T PF02786_consen 60 EEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQ 139 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHH
T ss_pred hhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHH
Confidence 9999999999988876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 328 ~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+|++.|.++++++||+|++||||++++++++|||||+|||+|++||++|++||+||+++|+++|+|.+|+
T Consensus 140 ~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 140 KLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred HHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999977899999999999999999999999999999999999999986
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=387.40 Aligned_cols=261 Identities=15% Similarity=0.201 Sum_probs=211.3
Q ss_pred cccccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCc---chhHHHHHHHHHHHhHhhhCCCCCCCCcCcccccccc
Q 000086 1525 TYCYDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC---EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELK 1600 (2304)
Q Consensus 1525 ~y~yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 1600 (2304)
.|.-++|+ +||.|||+|+ .+|.+++..|+++||+|+| ....+.+-.-.+..+|.+.. ..+.+.++|.
T Consensus 28 ~~~~~~p~--~lw~kc~~C~~~~~~~~l~~~~~vcp~c~~h~rltAreRI~~L~D~gSF~E~~-------~~~~~~dpl~ 98 (296)
T CHL00174 28 SWNTQKYK--HLWVQCENCYGLNYKKFLKSKMNICEQCGYHLKMSSSDRIELLIDPGTWNPMD-------EDMVSLDPIE 98 (296)
T ss_pred ccCCCCCC--CCeeECCCccchhhHHHHHHcCCCCCCCCCCcCCCHHHHHHHHccCCccEEcC-------CccCcCCCcc
Confidence 36678899 9999999987 8999999999999999999 22222221113444454432 4444556677
Q ss_pred ccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCE
Q 000086 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPL 1680 (2304)
Q Consensus 1601 ~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~ 1680 (2304)
|+....+|..+|.+.++.+|.++ |||++..++ +||+|+|+++||||++||+|+++++|+.|+.|+|.+.++|+
T Consensus 99 f~~d~~~Y~~rl~~a~~~t~~~d-gVVtG~G~I------~Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPl 171 (296)
T CHL00174 99 FHSDEEPYKDRIDSYQKKTGLTD-AVQTGIGQL------NGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPL 171 (296)
T ss_pred ccccccchHHHHHHHHhccCCCc-cEEEEEEEE------CCEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCE
Confidence 74314568889999999999987 588888776 99999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccc
Q 000086 1681 IYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGV 1760 (2304)
Q Consensus 1681 I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gv 1760 (2304)
|++.+||||||| |++.+|+||+ .+.+.+.++
T Consensus 172 V~l~~SGGARmQ--Eg~~sL~qma---------------k~saa~~~~-------------------------------- 202 (296)
T CHL00174 172 IIVCASGGARMQ--EGSLSLMQMA---------------KISSALYDY-------------------------------- 202 (296)
T ss_pred EEEECCCCcccc--ccchhhhhhH---------------HHHHHHHHH--------------------------------
Confidence 999999999998 9999998876 111111111
Q ss_pred cccccccccccccccccccceEEEEEcCcccchhhhh-hcccCEEEEecCcceEecChHHHHHhhcccccccccccCcce
Q 000086 1761 ENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYL-ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPK 1839 (2304)
Q Consensus 1761 e~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl-~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~ 1839 (2304)
+.+| .+|+|+++||||+||+||. +++||++|+++++.|+|+||++|++++|+++ +++||+++
T Consensus 203 ---~~~~-----------~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~l---pe~fq~ae 265 (296)
T CHL00174 203 ---QSNK-----------KLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTV---PEGSQAAE 265 (296)
T ss_pred ---HHcC-----------CCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCcC---CcccccHH
Confidence 1111 2699999999999997666 5579999999999999999999999999999 89999999
Q ss_pred eecccCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1840 IMATNGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1840 i~~~nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
++.++|++|.+|+ ..+.-..+.++|+++
T Consensus 266 ~l~~~G~vD~iV~-r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 266 YLFDKGLFDLIVP-RNLLKGVLSELFQLH 293 (296)
T ss_pred HHHhCcCceEEEc-HHHHHHHHHHHHHhh
Confidence 9999999999996 677777777777765
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=430.04 Aligned_cols=377 Identities=18% Similarity=0.294 Sum_probs=301.9
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000086 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2304)
Q Consensus 45 ~~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~ 113 (2304)
++.++||||+|.|.+ +..+++++|++||+++ .+.++......+.++||+.+..|
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi-----------~v~~np~~~~~~~~~aD~~y~~p---- 67 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVI-----------LVNSNPATIMTDPEMADKVYIEP---- 67 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEE-----------EEecchhhccCChhcCCEEEECC----
Confidence 355899999999974 5679999999999986 44444444456678899999876
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-----CCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-----EIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-----En~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
.+.+.|.++++++++|+|+|++|... ........|++.|+.++||+++++..+.||..++++++++|+|+|
T Consensus 68 ----~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp 143 (1050)
T TIGR01369 68 ----LTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVP 143 (1050)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 24688999999999999999987522 222234578889999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000086 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2304)
Q Consensus 189 p~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2304)
+|.. +++.+++.++++++|||+||||+.|+||+|+++|+|++||.+++.......+.
T Consensus 144 ~~~~-----------------------v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~ 200 (1050)
T TIGR01369 144 ESEI-----------------------AHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPI 200 (1050)
T ss_pred Ceee-----------------------cCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCC
Confidence 9876 78899999999999999999999999999999999999999999888776666
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeecccccccc------ccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCc
Q 000086 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR------RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2304)
Q Consensus 269 ~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqr------r~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy 342 (2304)
.+++||+|++|.+|++++++.|.+|+++.+ |++++ +..+.+..+|+..++++..++|.++|.++++++||
T Consensus 201 ~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~----~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~ 276 (1050)
T TIGR01369 201 NQVLVEKSLAGWKEIEYEVMRDSNDNCITV----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGI 276 (1050)
T ss_pred CcEEEEEcccCceEEEEEEEEeCCCCEEEE----eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 789999999998999999999999998876 55554 23456677898778899999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
+|.++|||+++++++++||+|+|||+++++.+++++||+|+++.++++++|.++..++. +
T Consensus 277 ~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s~atG~pl~~~~~~~alG~~l~~~~n--------~------------ 336 (1050)
T TIGR01369 277 EGGCNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDELKN--------P------------ 336 (1050)
T ss_pred cceeEEEEEEECCCCcEEEEEeecCcCcchhhhhHHhCCCHHHHHHHHHcCCCchhhcC--------C------------
Confidence 99999999999766889999999999999999999999999999999999999875421 0
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCC
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2304)
..| ++| ..|.|+.+.|. +.+|..+.-| | .+...++..-+. .+|||+++|+|
T Consensus 337 --------------i~g---------~~~-~~~~p~~~~~~-~k~p~~~~~~-~--~~~~~~~~~~~k-~~G~v~~~g~~ 387 (1050)
T TIGR01369 337 --------------VTG---------TTP-ASFEPSLDYVV-VKIPRWDFDK-F--AGVDRKLGTQMK-SVGEVMAIGRT 387 (1050)
T ss_pred --------------CcC---------cCc-cccCcCCCeEE-EEEEeCCCCC-C--CcccCCcCcccc-eeeEEEEECCC
Confidence 001 122 23455555532 1111111000 0 011111111111 29999999999
Q ss_pred HHHHHHHHHHhhcc
Q 000086 503 RALAIANMVLGLKE 516 (2304)
Q Consensus 503 reeA~~~l~~AL~e 516 (2304)
++||..++.++|..
T Consensus 388 ~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 388 FEEALQKALRSLEI 401 (1050)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999976
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=383.25 Aligned_cols=373 Identities=17% Similarity=0.186 Sum_probs=291.0
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||||+|+|..++.++++++++||+++ ++ |.+.+++..++||+++.++ |.|.+.+.++|++
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~-----------~~--d~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~ 60 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVIN-------MLDGDALRAVIER 60 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhhhCceEEEcC-------CCCHHHHHHHHHH
Confidence 69999999999999999999999985 44 4456778889999998873 5678999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
+++|+|+|+.+..+. .....+++.|+. +.|++++++.+.||..+++++ +++|||+|+|..
T Consensus 61 ~~id~v~~~~e~v~~--~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~---------------- 121 (380)
T TIGR01142 61 EKPDYIVPEIEAIAT--DALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYMF---------------- 121 (380)
T ss_pred hCCCEEEeccCccCH--HHHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceE----------------
Confidence 999999998665432 234567778865 469999999999999999985 899999999876
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEeccccceeeEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+||..+++.+.... ...+++||+|+++..|+++.
T Consensus 122 -------~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~ 194 (380)
T TIGR01142 122 -------ADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLL 194 (380)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEE
Confidence 778889988889999999999999999999999999999999999875432 23579999999987899999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
++.+..|++..... ....+..+.......|+. ++++..+++.+.+.++++++|+.|++++||+++ ++++||+|+||
T Consensus 195 ~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~--~~~~~viEinp 270 (380)
T TIGR01142 195 TVRHVDGNTTFCAP-IGHRQIDGDYHESWQPQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVK--GDEVIFSEVSP 270 (380)
T ss_pred EEEcCCCCEEEecC-cceEEeCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CCcEEEEEeec
Confidence 88877777544221 112222222222345765 889999999999999999999999999999998 56899999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
|++++...+-..+|+|+++++++.++|.|++..+ ..+.++...+
T Consensus 271 R~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~~~~------------------------------------~~~~~~~~~i 314 (380)
T TIGR01142 271 RPHDTGMVTLISQGLSEFALHVRAILGLPIPGIP------------------------------------QLGPAASAVI 314 (380)
T ss_pred CCCCCceEEeeecCCCHHHHHHHHHcCCCCCCcc------------------------------------ccCCceEEEE
Confidence 9998754444446999999999999999886310 1122333445
Q ss_pred ccCCCCCCCCCCCCcccccc----ccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 447 TSEDPDDGFKPTSGKVQELS----FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~----~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
.+++ .|++..+. ....|++.+.+..++|.. ....+|||++.|+|.++|++++..+++.++|+
T Consensus 315 ~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~G~v~~~~~s~~~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 315 KAKV--------TGYSPAFRGLEKALSVPNTQVRLFGKPEAY----VGRRLGVALATAKSVEAARERAEEVAHAVEVR 380 (380)
T ss_pred Eccc--------ccccchhhHHHHHHcCCCCEEEECCCCcCC----CCCcCEEEEEecCCHHHHHHHHHHHHhhccCC
Confidence 4432 23222211 223467665555555533 33569999999999999999999999988774
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=423.72 Aligned_cols=307 Identities=20% Similarity=0.289 Sum_probs=262.4
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|.|.. ++.+++++|++||+++ ++..+++..+.+..+||+.|..|
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI-----------~v~~npetvstd~~~aD~~y~~p------ 635 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETI-----------MMNSNPETVSTDYDTSDRLYFEP------ 635 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEE-----------EEeCCCccccCCcccCCeEEEEe------
Confidence 4689999999963 5679999999999986 55556667777888999999975
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcC-------------CCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHH
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHA-------------SEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQA 182 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~-------------SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~ 182 (2304)
.+++.++++|+++++|+|+|++|.. +++..+++ +.+.|+.++||+++++..+.||..+++++++
T Consensus 636 --l~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~ 712 (1102)
T PLN02735 636 --LTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNE 712 (1102)
T ss_pred --CCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHH
Confidence 5689999999999999999998843 23333333 3445899999999999999999999999999
Q ss_pred CCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000086 183 ANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2304)
Q Consensus 183 aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2304)
+|||+|||.. +.+.+++.++++++||||||||+.|+||+|+++|+|.+||..+++.+
T Consensus 713 ~GIp~p~~~~-----------------------v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 713 LKIEQPKGGI-----------------------ARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred cCCCCCCeeE-----------------------eCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHH
Confidence 9999999865 67889999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc--cc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Q 000086 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKC 339 (2304)
Q Consensus 263 ~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~q-KiieeaPa~~l~~e~~~~m~e~A~rlaka 339 (2304)
....++.+++||+|+++++|++|++++|++|+++.....+. +.+. |. ......|+..+++++.++|.+.+.+++++
T Consensus 770 ~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~-~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~ 848 (1102)
T PLN02735 770 VEVDPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEH-IEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKR 848 (1102)
T ss_pred HHhcCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEe-eeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 87766678999999988899999999999898775433221 1100 11 01123477679999999999999999999
Q ss_pred CCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 340 VNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 340 lGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
+||+|+++|||++++ +|++||+|+|||+++++|++++++|+|++++++++++|.+|..
T Consensus 849 L~~~G~~~vqf~v~~-dg~~yviEiNpR~s~t~p~~~katGidl~~~~~~~~~G~~l~~ 906 (1102)
T PLN02735 849 LNVCGLMNCQYAITP-SGEVYIIEANPRASRTVPFVSKAIGHPLAKYASLVMSGKSLKD 906 (1102)
T ss_pred cCCcceeeEEEEEcC-CCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhh
Confidence 999999999999973 6889999999999999999999999999999999999999864
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=388.85 Aligned_cols=381 Identities=15% Similarity=0.183 Sum_probs=302.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.+.+||+|+|+|..+..++++++++||+++ +. |.+.+++..++||+++.. +|.|.+.+.+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi-----------~l--d~~~~apa~~~AD~~~v~-------~~~D~~~l~~ 79 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVK-----------VL--DPLEDCPASSVAARHVVG-------SFDDRAAVRE 79 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceeeeC-------CCCCHHHHHH
Confidence 345799999999999999999999999985 34 555678889999998874 4678899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+|++ +|+|.....+ -+....+.+++.|+. ++|+++++..++||..+|++++++|||+|||..
T Consensus 80 ~a~~--~dvIt~e~e~--v~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~------------- 141 (577)
T PLN02948 80 FAKR--CDVLTVEIEH--VDVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFME------------- 141 (577)
T ss_pred HHHH--CCEEEEecCC--CCHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEE-------------
Confidence 9998 6888754222 223455788888976 479999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|| ||+|+++|++.+|+.++++.+... +.+++||+|+++.+|++
T Consensus 142 ----------v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~--~~~vlvEefI~~~~Eis 209 (577)
T PLN02948 142 ----------IDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF--ERGLYAEKWAPFVKELA 209 (577)
T ss_pred ----------eCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC--CCcEEEEecCCCCeEEE
Confidence 67888888889999999999999887 799999999999999999887532 45899999999889999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
|.++.+.+|++..+ +..+..++.+.......|+. +++++.+++.+.|.+++++||++|+++|||++++ +|.+||+|+
T Consensus 210 V~v~r~~~G~i~~~-p~~E~~~~~~~~~~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EI 286 (577)
T PLN02948 210 VMVARSRDGSTRCY-PVVETIHKDNICHVVEAPAN-VPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEV 286 (577)
T ss_pred EEEEECCCCCEEEe-cCcccEEECCeeEEEEECCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEE
Confidence 99999888887764 33455666655555667886 8899999999999999999999999999999984 678999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~ 444 (2304)
|||++++..++...+++|+++.+++.++|.|++.. ....++++..
T Consensus 287 npRpg~sGh~t~ea~~~s~fe~~vRa~lGlpl~~~-----------------------------------~~~~~~A~m~ 331 (577)
T PLN02948 287 APRPHNSGHYTIEACYTSQFEQHLRAVLGLPLGDT-----------------------------------SMKVPAAIMY 331 (577)
T ss_pred eCCCCCCCceeeecccCCHHHHHHHHHcCCCCCCc-----------------------------------cccCCcEEEE
Confidence 99999765566668999999999999999998631 1112456777
Q ss_pred EEccCCCC-CCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 445 RVTSEDPD-DGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 445 RI~aEdp~-~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
.+..++.. .++.+....+.. ....|++.+.+..+++.+ ....+|||++.|+|++++++++..+++.+.+.
T Consensus 332 nl~g~~~~~~g~~~~~~~~~~--~~~~p~~~v~~ygk~~~r----~~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 332 NILGEDEGEAGFRLAHQLMGR--ALNIPGASVHWYGKPEMR----KQRKMGHITVVGPSAAEVEARLDQLLAEESAD 402 (577)
T ss_pred EEeccccccccccchhhHHHH--HhhCCCCEEEEecCCCCC----CCCeeEEEEEecCCHHHHHHHHHHHHhhhccC
Confidence 77776522 233333222211 122355544444444432 22579999999999999999999999866543
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=407.81 Aligned_cols=309 Identities=17% Similarity=0.265 Sum_probs=262.9
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000086 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2304)
Q Consensus 45 ~~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~ 113 (2304)
++.++||||+|+|++ +..+++++|+.||+|+ .+.++...-.....+||+++..|
T Consensus 20 ~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi-----------~vd~np~t~~~~~~~aD~~yi~p---- 84 (1102)
T PLN02735 20 RTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVV-----------LINSNPATIMTDPETADRTYIAP---- 84 (1102)
T ss_pred ccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEeCC----
Confidence 456899999999986 5579999999999986 34223222222346799988765
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
.+.+.+.++++++++|+|+|++|... ++... ...|++.|+.++|++++++..+.||..++++++++|||+|
T Consensus 85 ----~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp 160 (1102)
T PLN02735 85 ----MTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTP 160 (1102)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCC
Confidence 34678999999999999999876433 33111 1456788999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC
Q 000086 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP 267 (2304)
Q Consensus 189 p~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~ 267 (2304)
+|.. +.+.+++.++++++| |||||||+.|+||+|+.+|+|.+||..+++.+....+
T Consensus 161 ~~~~-----------------------v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~ 217 (1102)
T PLN02735 161 PSGI-----------------------ATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASI 217 (1102)
T ss_pred CeeE-----------------------eCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCC
Confidence 9876 678899999999999 9999999999999999999999999999998876667
Q ss_pred CCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc------cceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 000086 268 GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR------HQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 268 ~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr------~qKiieeaPa~~l~~e~~~~m~e~A~rlakalG 341 (2304)
.++++||+|+.|.+|+++++++|..|+++.+ |++... ....+..+|+..++++..++|+++|.+++++||
T Consensus 218 ~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v----~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLg 293 (1102)
T PLN02735 218 TSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIG 293 (1102)
T ss_pred CCeEEEEEecCCCeEEEEEEEEcCCCCEEEE----eeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 7899999999988999999999988888765 433331 234566679877899999999999999999999
Q ss_pred c-eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 342 Y-VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 342 y-~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
+ .|.++|||++++++|++||+|+|||+++++++++++||+|+.+.++++|+|.+|+.+
T Consensus 294 i~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l~s~atG~~~a~~~~klalG~~l~~~ 352 (1102)
T PLN02735 294 VECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQI 352 (1102)
T ss_pred CCcCceEEEEEEECCCCcEEEEEecCCCCCcchhhhhhhCCCHHHHHHHHHCCCChhhh
Confidence 9 599999999997678999999999999999999999999999999999999999765
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=366.87 Aligned_cols=379 Identities=16% Similarity=0.178 Sum_probs=285.0
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
+||||+|+|..+..++++++++||+++ .+ |.+++++...+||+++.++ +.|.+.++++|+
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~ 72 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSHVID-------MLDGDALRAVIE 72 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchHHhhhheEECC-------CCCHHHHHHHHH
Confidence 589999999999999999999999985 33 3345667777899988764 457899999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
++++|+|+|+.+.... .....+++.|+.+ .|++++++.+.||..+|+++ +++|||+|+|..
T Consensus 73 ~~~id~vi~~~e~~~~--~~~~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~--------------- 134 (395)
T PRK09288 73 REKPDYIVPEIEAIAT--DALVELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYRF--------------- 134 (395)
T ss_pred HhCCCEEEEeeCcCCH--HHHHHHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceE---------------
Confidence 9999999998664322 2345667778765 49999999999999999998 589999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~i~VEeyI~g~reieV 285 (2304)
+++.+++.++++++||||||||..|+||+|+++|+|.+|+.++++.+..... +.+++||+|++++.|+++
T Consensus 135 --------~~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv 206 (395)
T PRK09288 135 --------ADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITL 206 (395)
T ss_pred --------ECCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEE
Confidence 7899999999999999999999999999999999999999999998754332 368999999997789999
Q ss_pred EEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEec
Q 000086 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELN 365 (2304)
Q Consensus 286 qvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEIN 365 (2304)
.++.+..|........+ ..+..+.......|+. ++++..+++.+.+.++++++|++|++++||+++ ++++||+|+|
T Consensus 207 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~--~~~~~viEin 282 (395)
T PRK09288 207 LTVRAVDGGTHFCAPIG-HRQEDGDYRESWQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVK--GDEVYFSEVS 282 (395)
T ss_pred EEEEcCCCCEEEecCcc-cEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCeEEEEEec
Confidence 99998765555443221 1111111222235765 788999999999999999999999999999998 4589999999
Q ss_pred cCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEE
Q 000086 366 PRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVR 445 (2304)
Q Consensus 366 pRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~R 445 (2304)
||+++....+-..+|+|+++++++.++|.|++.+. + .+.+..+.
T Consensus 283 pR~~~~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~--------------------------~----------~~~~~~~~ 326 (395)
T PRK09288 283 PRPHDTGMVTLISQNLSEFELHARAILGLPIPDIR--------------------------L----------YSPAASAV 326 (395)
T ss_pred CCCCCCcceeeeecccCHHHHHHHHHcCCCCCccc--------------------------c----------cCCceeEE
Confidence 99998754443345999999999999998874210 0 11122233
Q ss_pred EccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 446 VTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 446 I~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.++.+.. .....|. ... ...+++.+.... .........+|||++.|+|.++|++++..+++.++|.|
T Consensus 327 ~~~~~~~~-~~~i~~~-~~~--~~~~g~~~~~~~----k~~~~~~~~lG~v~~~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 327 ILAEGESA-NPSFDGL-AEA--LAVPGTDVRLFG----KPEIRGGRRMGVALATGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred Eecccccc-ccchhhH-HHH--hcCCCCEEEEec----CCCCCCCCeeEEEEeecCCHHHHHHHHHHHHhheeecc
Confidence 44433111 0011121 111 123454332211 11222345699999999999999999999999999988
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=366.35 Aligned_cols=255 Identities=18% Similarity=0.276 Sum_probs=211.6
Q ss_pred ccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCc-----chhHHHHHHHHHHHhHhhhCCCCCCCCcCccccccccc
Q 000086 1528 YDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC-----EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKF 1601 (2304)
Q Consensus 1528 yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 1601 (2304)
-|+|+ +||.|||+|+ .+|.+++..|+++||+|+| ...+..++ .+..+|. +....+.+.++|.|
T Consensus 19 ~~~~~--~~~~~c~~c~~~~~~~~l~~~~~vc~~c~~h~rl~areRi~~L--~D~gsF~-------E~~~~~~~~d~l~f 87 (285)
T TIGR00515 19 AEVPE--GVWTKCPKCGQVLYTKELERNLEVCPKCDHHMRMDARERIESL--LDEGSFE-------EFNSHLEPKDPLKF 87 (285)
T ss_pred CCCCC--CCeeECCCCcchhhHHHHHhhCCCCCCCCCcCcCCHHHHHHHc--eeCCeeE-------EeCCccccCccccC
Confidence 57899 9999999987 8888899999999999999 22222222 2233333 33344556677778
Q ss_pred cCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEE
Q 000086 1602 ADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLI 1681 (2304)
Q Consensus 1602 ~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I 1681 (2304)
++ ..+|..+|.+.++.+|.++ |||++..++ +|++|+|+|||+||++||+|...++|+.|++|+|.+.++|+|
T Consensus 88 ~~-~~~Y~~~l~~~~~~t~~~d-~vVtG~g~I------~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV 159 (285)
T TIGR00515 88 KD-SKKYKDRIAKAQKETGEKD-AVVTGKGTL------YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLI 159 (285)
T ss_pred Cc-ccchhHHHHHHhhccCCCC-cEEEEEEEE------CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEE
Confidence 76 6678889999998888865 699999876 999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccc
Q 000086 1682 YLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVE 1761 (2304)
Q Consensus 1682 ~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve 1761 (2304)
+|.+||||||| |++.+++||+ .+.....++.
T Consensus 160 ~l~dSgGaRmq--Eg~~sL~~~a---------------k~~~~~~~~~-------------------------------- 190 (285)
T TIGR00515 160 IFSASGGARMQ--EALLSLMQMA---------------KTSAALAKMS-------------------------------- 190 (285)
T ss_pred EEEcCCCcccc--cchhHHHhHH---------------HHHHHHHHHH--------------------------------
Confidence 99999999998 9999998876 1111112211
Q ss_pred ccccccccccccccccccceEEEEEcCcccchhhh-hhcccCEEEEecCcceEecChHHHHHhhcccccccccccCccee
Q 000086 1762 NLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI 1840 (2304)
Q Consensus 1762 ~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAy-l~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i 1840 (2304)
. ..+|+|+++||||+||++| +++++|++||++++.|+|+||++|++++|+++ ++++|++++
T Consensus 191 ---~------------~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~l---pe~~q~ae~ 252 (285)
T TIGR00515 191 ---E------------RGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PEGFQTSEF 252 (285)
T ss_pred ---c------------CCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCcc---chhcCCHHH
Confidence 0 1269999999999999655 55799999999999999999999999999999 799999999
Q ss_pred ecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1841 MATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1841 ~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
+..+|++|.++ +..+....|.++|+++-
T Consensus 253 ~~~~G~vD~iv-~~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 253 LLEHGAIDMIV-HRPEMKKTLASLLAKLQ 280 (285)
T ss_pred HHhCCCCcEEE-CcHHHHHHHHHHHHHHh
Confidence 99999999999 57899999999998763
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=364.79 Aligned_cols=255 Identities=19% Similarity=0.291 Sum_probs=212.2
Q ss_pred ccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCc-----chhHHHHHHHHHHHhHhhhCCCCCCCCcCccccccccc
Q 000086 1528 YDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSC-----EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKF 1601 (2304)
Q Consensus 1528 yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 1601 (2304)
-|+|+ +||.|||+|+ .+|.+++..|+++||+|+| ...+..++ .+..+|.+. ...+.+.++|.|
T Consensus 20 ~~~~~--~~~~~c~~c~~~~~~~~l~~~~~vc~~c~~h~rl~areRi~~L--~D~gsF~E~-------~~~~~~~d~l~f 88 (292)
T PRK05654 20 AEVPE--GLWTKCPSCGQVLYRKELEANLNVCPKCGHHMRISARERLDLL--LDEGSFVEL-------DAELEPKDPLKF 88 (292)
T ss_pred CCCCC--CCeeECCCccchhhHHHHHhcCCCCCCCCCCeeCCHHHHHHHH--ccCCccEEe-------cCccccCCcccC
Confidence 47899 9999999987 8999999999999999999 22222222 233344333 344556677888
Q ss_pred cCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEE
Q 000086 1602 ADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLI 1681 (2304)
Q Consensus 1602 ~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I 1681 (2304)
++ ...|.++|.+.++.+|.++ +||++..+| +||+|+|++||+||++||+|...++|+.|++++|.+.++|+|
T Consensus 89 ~~-~~~Y~~~l~~~~~~t~~~d-~vVtG~g~I------~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV 160 (292)
T PRK05654 89 RD-SKKYKDRLKAAQKKTGLKD-AVVTGKGTI------EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLV 160 (292)
T ss_pred Cc-ccccchHHHHhhhccCCCC-cEEEEEEEE------CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCEE
Confidence 76 5668889999998888876 499999876 999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccc
Q 000086 1682 YLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVE 1761 (2304)
Q Consensus 1682 ~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve 1761 (2304)
+|++|||+||| |++.+|+||+ + +.....++.
T Consensus 161 ~l~dsgGarmq--Egi~sL~~~a--------k-------~~~a~~~~~-------------------------------- 191 (292)
T PRK05654 161 IFSASGGARMQ--EGLLSLMQMA--------K-------TSAALKRLS-------------------------------- 191 (292)
T ss_pred EEEcCCCcchh--hhhhHHHhHH--------H-------HHHHHHHHH--------------------------------
Confidence 99999999998 9999998876 1 111111110
Q ss_pred ccccccccccccccccccceEEEEEcCcccchhhh-hhcccCEEEEecCcceEecChHHHHHhhcccccccccccCccee
Q 000086 1762 NLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI 1840 (2304)
Q Consensus 1762 ~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAy-l~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i 1840 (2304)
. ..+|+|+++||||+||++| +++++|++||++++.|+|+||++|++++|+++ ++++|++++
T Consensus 192 ---~------------a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e~l---pe~~~~ae~ 253 (292)
T PRK05654 192 ---E------------AGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVREKL---PEGFQRAEF 253 (292)
T ss_pred ---c------------CCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhhhh---hhhhcCHHH
Confidence 0 1279999999999999655 56779999999999999999999999999988 789999999
Q ss_pred ecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1841 MATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1841 ~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
+.++|++|.++ +..+....|.++|+++.
T Consensus 254 ~~~~G~vD~Vv-~~~e~r~~l~~~L~~~~ 281 (292)
T PRK05654 254 LLEHGAIDMIV-HRRELRDTLASLLALHT 281 (292)
T ss_pred HHhCCCCcEEE-CHHHHHHHHHHHHHHHh
Confidence 99999999999 58899999999999874
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=360.30 Aligned_cols=364 Identities=20% Similarity=0.274 Sum_probs=283.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
+++|+|+|+|..+..++++++++||+++ +. |.+.+++..++||+++.. +|.|.+.+.+++
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~-----------~~--d~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a 61 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVI-----------VL--DPDPDSPAAQVADEVIVA-------DYDDVAALRELA 61 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhHhCceEEec-------CCCCHHHHHHHH
Confidence 5789999999999999999999999985 34 455677888899998886 467899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+ .+|+|.+. +...+....+.+++. ..++|++++++.++||..+|++++++|||+|||..
T Consensus 62 ~--~~dvit~e--~e~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 120 (372)
T PRK06019 62 E--QCDVITYE--FENVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAV--------------- 120 (372)
T ss_pred h--cCCEEEeC--cCCCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceE---------------
Confidence 8 56888744 333333344556555 35789999999999999999999999999999887
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+|+||..|| ||+|+++|++.+|+..+++.+. ..+++||+|+++++|++|.
T Consensus 121 --------v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~I~~~~E~sv~ 188 (372)
T PRK06019 121 --------VDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLG----SVPCILEEFVPFEREVSVI 188 (372)
T ss_pred --------eCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecCCCCeEEEEE
Confidence 78899999999999999999999865 8999999999999999998762 4689999999988999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
++.+.+|+++.+.. ...+++.+.......|+. +++++.+++++.+.++++++||+|+++|||+++ .+|++||+|+||
T Consensus 189 ~~~~~~G~~~~~p~-~e~~~~~gi~~~~~~pa~-~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~-~dg~~~v~Einp 265 (372)
T PRK06019 189 VARGRDGEVVFYPL-VENVHRNGILRTSIAPAR-ISAELQAQAEEIASRIAEELDYVGVLAVEFFVT-GDGELLVNEIAP 265 (372)
T ss_pred EEECCCCCEEEeCC-cccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCccceeEEEEEEc-CCCeEEEEEecC
Confidence 99998888876432 223333332333456875 888999999999999999999999999999998 367799999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
|++++..+|..++|+|+++.+++..+|.|+... ...+.++...|
T Consensus 266 R~~~sg~~t~~~~~~sqf~~~ira~~Glpl~~~------------------------------------~~~~~~~m~ni 309 (372)
T PRK06019 266 RPHNSGHWTIEACSTSQFEQHLRAILGLPLGTT------------------------------------RLLSPAVMVNL 309 (372)
T ss_pred CccCcccEEhhhcCccHHHHHHHHHcCCCCCCc------------------------------------cccCceEEEEE
Confidence 999998889999999999999999999998521 11233555555
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhc
Q 000086 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2304)
..++. . ..+... ....|++.+++.-++.. .....+|||.+.|+|.+++++++..+..
T Consensus 310 lg~~~---~--~~~~~~---~~~~~~~~~~~ygk~~~----~~~rk~Ghv~~~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 310 LGDDW---L--EPRWDA---LLALPGAHLHLYGKAEA----RPGRKMGHVTVLGDDVEALLAKLEALAP 366 (372)
T ss_pred ECchh---h--hhHHHH---HhhCCCCEEEECCCCCC----CCCCceEEEEeecCCHHHHHHHHHHHHh
Confidence 54331 0 011111 11224443222111111 1233499999999999999999998876
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=397.03 Aligned_cols=308 Identities=19% Similarity=0.293 Sum_probs=261.6
Q ss_pred CCccEEEEECchHHH-----------HHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 46 KPIHSILIANNGMAA-----------VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 46 ~~~~kILIan~G~~A-----------v~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
..++||||+|+|.+. ..++++++++||+++ .+.++........++||+.+..|
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi-----------~v~~~p~~~~~~~~~aD~~y~~p----- 68 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVV-----------LVNSNPATIMTDPEMADATYIEP----- 68 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEE-----------EEcCCcccccCCcccCCEEEECC-----
Confidence 358999999999864 479999999999986 44333322234456899988876
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCc--h--HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPE--L--PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~~--l--a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.+.+.|.++++++++|+|+|+.|... .+.. + ...|++.|+.++||++++++.+.||..++++++++|||+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 145 (1066)
T PRK05294 69 ---ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPR 145 (1066)
T ss_pred ---CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCC
Confidence 34799999999999999999977533 2211 1 13577889999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000086 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2304)
Q Consensus 190 ~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2304)
|.. +.+.+++.++++++|||+||||+.|.||+|+++|++.+||.+++++.....+..
T Consensus 146 ~~~-----------------------v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~ 202 (1066)
T PRK05294 146 SGI-----------------------AHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVT 202 (1066)
T ss_pred eee-----------------------eCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCC
Confidence 876 788999999999999999999999999999999999999999998776655567
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc-----c-ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR-----H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr-----~-qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~ 343 (2304)
+++||+|++|.+|+++.++.|++|+++.+ |..++. | ..++..+|+..++++..+++++.|.++++++||+
T Consensus 203 ~vlvEe~I~G~~Eisv~v~rd~~g~~~~~----~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~ 278 (1066)
T PRK05294 203 EVLIEESLLGWKEYEYEVMRDKNDNCIIV----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVE 278 (1066)
T ss_pred eEEEEEcccCceEEEEEEEEcCCCCEEEE----eeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 89999999998999999999999999876 333322 2 2345567886688899999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
|+++|||++++.++++||+|+|||++++..++..++|+|+....+++++|.++..+
T Consensus 279 ~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m 335 (1066)
T PRK05294 279 TGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEI 335 (1066)
T ss_pred cCceEEEEEEECCCCcEEEEEeecCCCcceeeeeHhhCCCHHHHHHHHHcCCChHHh
Confidence 99999999997678899999999999999998889999999999999999988654
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=341.92 Aligned_cols=293 Identities=22% Similarity=0.297 Sum_probs=246.9
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
+|+|+|+|..+..++++++++||+++ ++ |.+.+++..++||+++.. +|.|.+.|.+++++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~-----------~~--d~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~ 60 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVH-----------VL--DPDANSPAVQVADHVVLA-------PFFDPAAIRELAES 60 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--CCCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh
Confidence 48999999999999999999999985 44 556778889999998853 56788999999986
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
. |.|.+.+++.+ ......+++.|+. ++|++++++.++||..++++++++|||+|+|..
T Consensus 61 ~--dvit~e~e~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 118 (352)
T TIGR01161 61 C--DVITFEFEHVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLV----------------- 118 (352)
T ss_pred C--CEEEeCcCcCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccE-----------------
Confidence 5 77765433322 2245777888865 569999999999999999999999999999886
Q ss_pred cccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+.+.+++.++++++|||+|+||..|+ ||+|+++|++.+|+.++++.+. ..++++|||+++++|++|.++
T Consensus 119 ------~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~I~~~~E~sv~~~ 188 (352)
T TIGR01161 119 ------IKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG----DRECIVEEFVPFERELSVIVA 188 (352)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEE
Confidence 77889999999999999999999987 9999999999999999988753 358999999997899999999
Q ss_pred EcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCC
Q 000086 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2304)
Q Consensus 289 ~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2304)
.+.+|++..+ ......++.+.......|+. +++++.+++.+.+.++++++||+|++++||++++ +|++||+|+|||+
T Consensus 189 ~~~~G~~~~~-~~~~~~~~~g~~~~~~~p~~-~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg~~~v~EinpR~ 265 (352)
T TIGR01161 189 RSADGETAFY-PVVENIHQDGILRYVVAPAA-VPDAIQARAEEIARRLMEELGYVGVLAVEMFVLP-DGRLLINELAPRV 265 (352)
T ss_pred EcCCCCEEEE-CCcccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEecCCC
Confidence 8888886653 33333333333333456775 7888899999999999999999999999999984 6679999999999
Q ss_pred CCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 369 qgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+++..++...++++.++.+++.++|.|++
T Consensus 266 ~~sg~~~~~~~~~s~f~~~~ra~~g~~l~ 294 (352)
T TIGR01161 266 HNSGHYTLDGCSTSQFEQHLRAILGLPLG 294 (352)
T ss_pred CCcCcCchhhccccHHHHHHHHHcCCCCC
Confidence 99988888899999999999999999986
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=382.31 Aligned_cols=308 Identities=18% Similarity=0.287 Sum_probs=257.9
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 46 ~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.++||||+|+|.+ +..++++++++||+++ .+.++...-.....+||..+..|
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-----------~v~~np~~~~~d~~~ad~~y~ep----- 68 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-----------LVNPNPATIMTDPAPADTVYFEP----- 68 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-----------EEeCCcchhhcCcccCCeeEECC-----
Confidence 46899999999986 5689999999999986 33222211111224788877654
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.+.+.+.++++++++|+|+|++|... .+... ...|++.|+.++||+++++..+.||..++++++++|||+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~ 145 (1068)
T PRK12815 69 ---LTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPE 145 (1068)
T ss_pred ---CCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCC
Confidence 34799999999999999999876432 22111 12467789999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000086 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2304)
Q Consensus 190 ~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2304)
|.. +++.+++.++++++|||+||||+.|.||+|+.+|+|.+||.++++......+..
T Consensus 146 ~~~-----------------------v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~ 202 (1068)
T PRK12815 146 SEI-----------------------VTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIH 202 (1068)
T ss_pred cee-----------------------eCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCC
Confidence 876 788999999999999999999999999999999999999999998887666567
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccc------eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ------KIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q------KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~ 343 (2304)
+++||+|++|.+|+++.++.|..|+++.+ |...+.+. ..+..+|+..++++..++|++.|.++++++|++
T Consensus 203 ~vLVEe~I~G~~E~sv~v~rD~~g~~~~~----~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~ 278 (1068)
T PRK12815 203 QCLLEESIAGWKEIEYEVMRDRNGNCITV----CNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVV 278 (1068)
T ss_pred eEEEEEccCCCeEEEEEEEEcCCCCEEEE----EeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999998999999999999998876 43333221 123346886688999999999999999999999
Q ss_pred eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
|.++|||+++++++++|++|+|||++++..++..++|+++.+..+++++|.+|+.|
T Consensus 279 G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~~atG~pl~~~~~~~alG~~l~ei 334 (1068)
T PRK12815 279 GGCNIQFALDPKSKQYYLIEVNPRVSRSSALASKATGYPIAKIAAKLAVGYTLNEL 334 (1068)
T ss_pred CceEEEEEEECCCCcEEEEEEecCcccchhhhhHhhCCcHHHHHHHHHcCCChHHh
Confidence 99999999997567899999999999999999999999999999999999998765
|
|
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=346.37 Aligned_cols=381 Identities=15% Similarity=0.141 Sum_probs=274.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCC-ChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRIN-AEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~-a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
||++|||++.+..+..++++++++||+++ ++....+.... ......+|....++ +.|.+.+++
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v---------~v~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~l~~ 64 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPI---------AVTSSCLLDPYYYASFDTSDFIEVII-------NGDIDDLVE 64 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEE---------EEEcCCCCchhhhcccCcccchhhhc-------CCCHHHHHH
Confidence 78999999999999999999999999985 33332221110 11223344333332 256899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHH-CCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLST-KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~-~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
+++++++|+|+||..... .++..+.+ .|+. .|++++++..++||..|+++++++|||+|++..
T Consensus 65 ~~~~~~~d~vi~~~e~~~---~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~------------ 128 (416)
T PRK07206 65 FLRKLGPEAIIAGAESGV---ELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQIN------------ 128 (416)
T ss_pred HHHHcCCCEEEECCCccH---HHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEe------------
Confidence 999999999999854322 23444443 4543 389999999999999999999999999999876
Q ss_pred ccCcccccccccCCHHHHHHHhhccCC---cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh-----CCCCcEEEEEe
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGY---PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE-----VPGSPIFIMKV 276 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGy---PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e-----~~~~~i~VEey 276 (2304)
+.+.+++.++++++|| |+||||..|+||+||++|+|.+|+.++++++... ..+..++||+|
T Consensus 129 -----------~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~ 197 (416)
T PRK07206 129 -----------TADWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEY 197 (416)
T ss_pred -----------cCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEc
Confidence 6788999999999998 9999999999999999999999999999987643 12468999999
Q ss_pred ccccceeeEEEEEcCCCCEEEee--ccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce-eeeEEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGNVAALH--SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~vi~l~--~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~-Ga~tVEfl~d 353 (2304)
++| .|++|+++.. .|+++... .+..........+.........+....+++.+.+.++++++|+. |++|+||+++
T Consensus 198 i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~ 275 (416)
T PRK07206 198 LIG-TEYVVNFVSL-DGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLT 275 (416)
T ss_pred ccc-EEEEEEEEEE-CCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEc
Confidence 987 7999998874 35654321 11000000011111111111134677889999999999999995 9999999998
Q ss_pred ccCCcEEEEEeccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccc
Q 000086 354 METGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQ 431 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~ 431 (2304)
+++++++|||||++|.. .+++.++|+|+.+++++.++|.+....+ .
T Consensus 276 --~~g~~liEin~R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~------------------------------~ 323 (416)
T PRK07206 276 --ADGPRLIEIGARLDGGLHPDVARLATGDSQLDATVESLADPDVFRET------------------------------L 323 (416)
T ss_pred --CCCCEEEEECCccCCCCccchhhhhcCcCHHHHHHHHHhCchhhccc------------------------------c
Confidence 56799999999999874 5678999999999999999997642100 0
Q ss_pred cCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCcccccCC--CccEEEEEEeCCHH
Q 000086 432 AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEFSD--SQFGHVFAFGESRA 504 (2304)
Q Consensus 432 ~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~~D--s~~g~via~G~~re 504 (2304)
.....+.+|+....+.+ |..|++..+. +...|+| .+.+.+..|+.+....| +.+|+|++.|+|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~ 395 (416)
T PRK07206 324 REGYRLKAHVFNVFLIS--------PAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKE 395 (416)
T ss_pred CCCcChhhceEEEEEec--------CCCceEeCCccHHHHHhCCchhheEEecCCCCCccCceecCCCCEEEEEEcCCHH
Confidence 00112234443333322 3467777664 2334555 45666889999988766 45999999999999
Q ss_pred HHHHHHHH
Q 000086 505 LAIANMVL 512 (2304)
Q Consensus 505 eA~~~l~~ 512 (2304)
++......
T Consensus 396 ~~~~~~~~ 403 (416)
T PRK07206 396 QLWQDYEK 403 (416)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=378.58 Aligned_cols=327 Identities=20% Similarity=0.338 Sum_probs=267.6
Q ss_pred ccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000086 48 IHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2304)
Q Consensus 48 ~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~s 116 (2304)
.+||||+|.|.. +++++++++++||+++ .+..+...-+.....+|+.+.-|
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI-----------~v~~npetvs~d~~~~D~ly~ep------- 615 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETI-----------MINYNPETVSTDYDTSDRLYFEP------- 615 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEE-----------EEecCCccccccccccceEEEec-------
Confidence 479999999975 7899999999999986 33223333344556789877643
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCcc
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~ 196 (2304)
.+.+.++++++++++|+|++++|.... ..++..|++.|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 -~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~---- 689 (1050)
T TIGR01369 616 -LTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKT---- 689 (1050)
T ss_pred -CCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEE----
Confidence 347999999999999999999875432 24678888999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000086 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2304)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEey 276 (2304)
+.+.+|+.++++++|||+||||+.++||+|+.+|+|.+||..+++++....++.+++||+|
T Consensus 690 -------------------v~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeef 750 (1050)
T TIGR01369 690 -------------------ATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKY 750 (1050)
T ss_pred -------------------ECCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeec
Confidence 7899999999999999999999999999999999999999999999877677789999999
Q ss_pred ccccceeeEEEEEcCCCCEEEeeccccccccc--cc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~q-KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d 353 (2304)
+++++|++|++++|+ |+++.....+. +.+. |. ......|+..++++..++|.+.+.++++++|+.|++++||+++
T Consensus 751 I~~G~E~~Vd~l~d~-g~v~i~~i~e~-~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~ 828 (1050)
T TIGR01369 751 LEDAVEVDVDAVSDG-EEVLIPGIMEH-IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK 828 (1050)
T ss_pred CCCCeEEEEEEEEeC-CEEEEEEEEEe-ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE
Confidence 997899999999986 55544321110 0010 11 1122346666888999999999999999999999999999998
Q ss_pred ccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch-----------------hhhhcccccCCCcccc
Q 000086 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP-----------------EIRRFYGMEHGGVYDA 416 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip-----------------dir~~yg~~~~~~~~~ 416 (2304)
++++|+||+|||++++.|+++.++|+|++++.+++++|.++..+. .+.+|-|.++. ++++
T Consensus 829 --~~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vK~p~f~~~~~~~~d~~-lg~e 905 (1050)
T TIGR01369 829 --DGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEELGVGKEKEPKYVAVKEPVFSFSKLAGVDPV-LGPE 905 (1050)
T ss_pred --CCeEEEEEEeCCCCchHHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCCeEEEEeccCChhhcCCCCCc-CCce
Confidence 689999999999999999999999999999999999999876431 24445555554 4566
Q ss_pred cccccc
Q 000086 417 WRKTSV 422 (2304)
Q Consensus 417 ~~~~~~ 422 (2304)
||+||.
T Consensus 906 mkstge 911 (1050)
T TIGR01369 906 MKSTGE 911 (1050)
T ss_pred eEecCc
Confidence 666664
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=339.96 Aligned_cols=383 Identities=19% Similarity=0.211 Sum_probs=266.3
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
.||||+|+|..+..+++++++.|+.+. ++..+. +.... .++....+.. ++.|.+.|+++|+
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~---------~~~~~~----~~~~~-~~~~~~~~~~-----~~~d~~~l~~~~~ 61 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKY---------VYVAPG----NAGTA-RLAKNKNVAI-----SITDIEALVEFAK 61 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccE---------EEEECC----CHHHh-hhcccccccC-----CCCCHHHHHHHHH
Confidence 389999999999999999999886542 223322 22222 2232222211 4578999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+++.+... ...+++.+++.|++++||++++++.+.||..++++++++|||+|+|..
T Consensus 62 ~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~---------------- 124 (423)
T TIGR00877 62 KKKIDLAVIGPEAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEV---------------- 124 (423)
T ss_pred HhCCCEEEECCchHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEE----------------
Confidence 999999999854211 123567888899999999999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++||| +|+||..|+||+|+++|++.+|+.++++++.... ++.+++||+|++| .|++
T Consensus 125 -------~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~s 196 (423)
T TIGR00877 125 -------FTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVS 196 (423)
T ss_pred -------ECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEE
Confidence 77899999999999999 9999999999999999999999999998876542 2457999999987 7999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEE------------EeCCCCCCCHHHHHHH-HHHH---HHHHHHCC--ceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKL-EQAA---RRLAKCVN--YVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKii------------eeaPa~~l~~e~~~~m-~e~A---~rlakalG--y~Ga~ 346 (2304)
|.++.|+. .+..+. +.+.+++.. ...|++.++++...++ .+.+ .+.+.++| |+|++
T Consensus 197 v~~~~dg~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~ 270 (423)
T TIGR00877 197 LLAFVDGK-TVIPMP-----PAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVL 270 (423)
T ss_pred EEEEEcCC-eEEece-----eeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEE
Confidence 99999863 343322 112222221 2346555666655443 3334 44444444 78999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||+++ ++++|++|+|||+++... .....+++|+.+++++++.|.. +.++ +
T Consensus 271 ~ie~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~l-~~~~------------------------~ 323 (423)
T TIGR00877 271 YAGLMLT--KEGPKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKL-DEVE------------------------L 323 (423)
T ss_pred EEEEEEE--CCCcEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCCC-CCCC------------------------c
Confidence 9999999 445999999999987532 2333467999999999999952 1110 1
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc---ccCCCcEEEE-EeeeeCCcccccCCCccEEEEEEeC
Q 000086 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS---FKSKPNVWAY-FSVKSGGGIHEFSDSQFGHVFAFGE 501 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~---~~s~~~V~~~-~~v~~G~~i~~~~Ds~~g~via~G~ 501 (2304)
.| ..+.++.+.+.+.. +-...++...+. ....+++.++ .++.....-.....+++|+|++.|+
T Consensus 324 ~~---------~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vi~~g~ 390 (423)
T TIGR00877 324 RF---------DNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFHAGTKQDNGKLVTSGGRVLAVTALGK 390 (423)
T ss_pred eE---------CCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEECceeccCCEEEEcCCEEEEEEEecC
Confidence 11 11233334443322 101122222222 1122344332 1222111111234577999999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000086 502 SRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2304)
|+++|++++.++++.+++.|
T Consensus 391 ~~~~a~~~~~~~~~~i~~~~ 410 (423)
T TIGR00877 391 SLEEARERAYEAVEYIKFEG 410 (423)
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999987
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=340.21 Aligned_cols=374 Identities=18% Similarity=0.218 Sum_probs=264.1
Q ss_pred EEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~G-y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....++.++++.+ +.++ ++.+ .|....+.++ .+.+ ++.|.+.|+++|+
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i----------~~~~----~n~g~~~~~~-~~~~-------~~~d~~~l~~~~~ 59 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKV----------YVAP----GNAGTALLAE-NVVI-------DVTDIEALVAFAK 59 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE----------EEeC----CCHHHHhhcc-ccCC-------CCCCHHHHHHHHH
Confidence 8999999998888999998864 3332 1222 1233333333 2222 4578999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|++|.+... ...+.+.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (420)
T PRK00885 60 EEGIDLTVVGPEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYET---------------- 122 (420)
T ss_pred HhCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999998843221 113457788899999999999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|+|.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~s 194 (420)
T PRK00885 123 -------FTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEAS 194 (420)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEE
Confidence 778999999999999999999999999999999999999999999876432 2458999999987 8999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEE------------EeCCCCCCCHHHHHHHHH-HHHHHHH---HCC--ceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLEQ-AARRLAK---CVN--YVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKii------------eeaPa~~l~~e~~~~m~e-~A~rlak---alG--y~Ga~ 346 (2304)
|.++.|+. .+..+. ..+.|++.. ...|++.++++..+++.+ .+.++.+ ++| |+|+.
T Consensus 195 v~~~~~g~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~ 268 (420)
T PRK00885 195 FFAFVDGE-NVLPLP-----TAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVL 268 (420)
T ss_pred EEEEECCC-ceEece-----eeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEE
Confidence 99999763 444332 122232221 225666677777766654 5555444 444 68999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||+++ ++++|++|+|||+++. +......++.|+..++++++.|.+... ++
T Consensus 269 ~ve~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~-------------------------~~ 321 (420)
T PRK00885 269 YAGLMIT--KDGPKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLDEV-------------------------EL 321 (420)
T ss_pred EEEEEEE--CCCcEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCCCC-------------------------Cc
Confidence 9999999 5679999999999864 434445567899999999999965421 11
Q ss_pred CCCccccCCCCCceEEEEEEE----ccCCCCCCCCCCCCc-cccccccCCCcEEEE-Eeee-eCCcccccCCCccEEEEE
Q 000086 426 PFDFDQAESTRPKGHCVAVRV----TSEDPDDGFKPTSGK-VQELSFKSKPNVWAY-FSVK-SGGGIHEFSDSQFGHVFA 498 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI----~aEdp~~~f~P~~G~-i~~l~~~s~~~V~~~-~~v~-~G~~i~~~~Ds~~g~via 498 (2304)
.|. ++.++.+.+ |+++|. .|. |..+ +...++.++ .++. .++.+. ...+++++|++
T Consensus 322 ~~~---------~~~a~~~~~~~~gy~~~~~------~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~-~~g~R~~~vi~ 383 (420)
T PRK00885 322 EWD---------DRAAVGVVLAAKGYPGDYR------KGDVITGL--EAADADKVFHAGTKLEDGKLV-TNGGRVLCVTA 383 (420)
T ss_pred eEC---------CCcEEEEEEeCCCCCCCCC------CCCEeecc--cccCCCEEEECceeccCCeEE-EeCCEEEEEEE
Confidence 111 122333333 333332 222 1111 100111111 1222 112211 23467999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEec
Q 000086 499 FGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G 521 (2304)
.|+|++||+++++++++.+++.|
T Consensus 384 ~g~t~~eA~~~a~~~~~~i~~~~ 406 (420)
T PRK00885 384 LGDTLEEAQKRAYAALDKIDFDG 406 (420)
T ss_pred ecCCHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999987
|
|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=337.39 Aligned_cols=382 Identities=20% Similarity=0.199 Sum_probs=273.9
Q ss_pred EEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 52 LIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 52 LIan~G~~Av~iIrsar~~G--y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||+|+|.-.-.+..++++-. .+++ +.|. | +....+++.+.+|. -++.|.+.|+++|++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~-----------~~pg----n-~g~~~~~~~~~vp~----~~~~d~~~l~~~a~~ 60 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVF-----------CAPG----N-AGIATSGDATCVPD----LDISDSAAVISFCRK 60 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEE-----------ECCC----C-HHHhhhccceeecC----CCCCCHHHHHHHHHH
Confidence 68898887777777777654 2222 3332 3 45555666666643 245778999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
+++|.|++|+..... +.+.+.|++.|++++||+.++++.++||..+|++++++|||||+|..
T Consensus 61 ~~id~vvvg~E~~lv-~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~----------------- 122 (434)
T PLN02257 61 WGVGLVVVGPEAPLV-AGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYET----------------- 122 (434)
T ss_pred cCCCEEEECCchHHH-HHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEE-----------------
Confidence 999999999543222 24667888899999999999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccceeeE
Q 000086 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~reieV 285 (2304)
+.+.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+... ..+.+++||+|++| +|++|
T Consensus 123 ------~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv 195 (434)
T PLN02257 123 ------FTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASF 195 (434)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEE
Confidence 67889999999999999999999999999999999999999999887432 12468999999987 69999
Q ss_pred EEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHH---HHH--CCceeeeE
Q 000086 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRL---AKC--VNYVGAAT 347 (2304)
Q Consensus 286 qvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rl---aka--lGy~Ga~t 347 (2304)
+++.|+. +++.+. ..| .|+++.+ .+|++.+++++.+++ ++.+.++ .++ +.|+|..+
T Consensus 196 ~~~~dG~-~~~pl~----~~~-dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ 269 (434)
T PLN02257 196 FALVDGE-NAIPLE----SAQ-DHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLY 269 (434)
T ss_pred EEEECCC-cEEEEE----eee-ecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999854 455442 233 2444433 457777888888875 4444444 334 45789999
Q ss_pred EEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccC
Q 000086 348 VEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATP 426 (2304)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~ 426 (2304)
+||+++.++|++||||+|+|+|. |+.++...++.||++++++++.|.... + .+.
T Consensus 270 ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~~-~------------------------~~~ 324 (434)
T PLN02257 270 AGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSG-V------------------------SLT 324 (434)
T ss_pred EEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCCC-C------------------------Cce
Confidence 99999843677999999999995 466676679999999999999996321 1 122
Q ss_pred CCccccCCCCCceEEEEEEEccCCCCCCCCCCCC-ccccccccC--CCcEEEEE-eee--eCCcccccCCCccEEEEEEe
Q 000086 427 FDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG-KVQELSFKS--KPNVWAYF-SVK--SGGGIHEFSDSQFGHVFAFG 500 (2304)
Q Consensus 427 f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G-~i~~l~~~s--~~~V~~~~-~v~--~G~~i~~~~Ds~~g~via~G 500 (2304)
|+ .+.++.+.+.+.... ..|..| .|..+.-.. .+++.++. ++. .++.+. ...+++..|++.|
T Consensus 325 ~~---------~~~av~vv~a~~gYp--~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-t~ggRvl~v~~~g 392 (434)
T PLN02257 325 WS---------PDSAMVVVMASNGYP--GSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNVV-AAGGRVLGVTAKG 392 (434)
T ss_pred EC---------CCceEEEEEcCCCCC--CCCCCCCEeeCCccccccCCCCEEEECCceEccCCEEE-ECCCeEEEEEEec
Confidence 32 122333333332210 112223 222222111 14443332 222 123222 3456799999999
Q ss_pred CCHHHHHHHHHHhhcceEEec
Q 000086 501 ESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 501 ~~reeA~~~l~~AL~el~I~G 521 (2304)
+|.++|+++++++++.+++.|
T Consensus 393 ~~~~~A~~~ay~~~~~i~~~~ 413 (434)
T PLN02257 393 KDIAEARARAYDAVDQIDWPG 413 (434)
T ss_pred CCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999998
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=338.80 Aligned_cols=384 Identities=14% Similarity=0.165 Sum_probs=271.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|.-...++.++++.|++++ +++.. .|......++.++.+ +..|.+.|+++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~-----------~~~~~--~Npg~~~~a~~~~~~-------~~~d~e~l~~~ 60 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILF-----------SVIGH--ENPSIKKLSKKYLFY-------DEKDYDLIEDF 60 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEE-----------EEECC--CChhhhhcccceeec-------CCCCHHHHHHH
Confidence 57899999999999999999999997765 33222 344445567765543 34678999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|++|.+.... ..+...+++.|++++||+.++++.++||..+|++++++|||+|++..
T Consensus 61 ~~~~~id~Vi~~~d~~l~-~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~-------------- 125 (435)
T PRK06395 61 ALKNNVDIVFVGPDPVLA-TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFN-------------- 125 (435)
T ss_pred HHHhCCCEEEECCChHHH-HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccc--------------
Confidence 999999999999653221 13446667789999999999999999999999999999999987542
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhh-CCCCcEEEEEeccccceee
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGE-VPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e-~~~~~i~VEeyI~g~reie 284 (2304)
.+.+.+++..++.+++|||||||..++||+||++|.+. +++.+++..+... ..+.+++||||++| .|++
T Consensus 126 --------~~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~S 196 (435)
T PRK06395 126 --------ACFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFS 196 (435)
T ss_pred --------eeCChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEE
Confidence 04566788888888899999999999999999999542 2334444433332 33568999999987 6999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEe--C--------------CCCCCCHHHHHHHHHHHHHHHHHCC-----ce
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEE--G--------------PITVAPLETVKKLEQAARRLAKCVN-----YV 343 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiiee--a--------------Pa~~l~~e~~~~m~e~A~rlakalG-----y~ 343 (2304)
|+++.|+. .+..+. +-+.|.+..+. + |.+.++++..+++.+.+.+++++|+ |+
T Consensus 197 vd~~~dg~-~~~~l~-----~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~ 270 (435)
T PRK06395 197 LQAFSDGK-HLSFMP-----IVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFK 270 (435)
T ss_pred EEEEEcCC-eEEEec-----ccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 99999864 333321 22233333221 1 3445889999999999999999999 78
Q ss_pred eeeEEEEEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 344 GAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
|+.++|++++ ++++|+||+|+|++.- ....-...+.|+..+.+.++.| +|..
T Consensus 271 G~l~~~~~lt--~~gp~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~------------------------ 323 (435)
T PRK06395 271 GIMYGQFMDT--PNGVKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG-NLNG------------------------ 323 (435)
T ss_pred EEEEEEEEEe--CCCcEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCC------------------------
Confidence 9999999998 6779999999999853 3222234579999999999999 5531
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEE-EEeeee-CCcccccCCCccEEEEEEe
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWA-YFSVKS-GGGIHEFSDSQFGHVFAFG 500 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~-~~~v~~-G~~i~~~~Ds~~g~via~G 500 (2304)
.+.|. .....+..+...-|+++ |..|.|........+++.+ +.++.. .+. .....+++++|++.|
T Consensus 324 -~~~~~-----~~~~~~~~l~~~gYp~~------~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~-~~s~ggRv~~vv~~g 390 (435)
T PRK06395 324 -SIKFE-----RKATVLKYIVPPGYGEN------PSPGRIKIDKTIFDSNSDVYYASVSGTLND-VKTSGSRSLAIIAKG 390 (435)
T ss_pred -Cceec-----CCCEEEEEEecCCCCCC------CCCCceeccccccCCCCEEEEeeccccCCC-eEECCCcEEEEEEEc
Confidence 12221 11112233333333332 4446554221111244444 333331 112 223456799999999
Q ss_pred CCHHHHHHHHHHhhcceEEec
Q 000086 501 ESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 501 ~~reeA~~~l~~AL~el~I~G 521 (2304)
+|.++|+++++++++.++ .|
T Consensus 391 ~~~~eA~~~a~~~~~~I~-~~ 410 (435)
T PRK06395 391 DSIPEASEKVDSDLNAVH-GS 410 (435)
T ss_pred CCHHHHHHHHHHHHhccC-CC
Confidence 999999999999999998 55
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=368.66 Aligned_cols=325 Identities=20% Similarity=0.312 Sum_probs=264.0
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|.|. .++.+++++|++||+++ .+..++...+.....||+.+..|
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI-----------~vn~npetvs~~~~~aD~~y~ep------ 616 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETI-----------MINNNPETVSTDYDTADRLYFEP------ 616 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEE-----------EEeCCccccccccccCceEEEcc------
Confidence 458999999986 46789999999999986 33234444455666799987754
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.|+++++++++|+|+|++|.... ..++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 617 --~~~e~vl~I~~~e~~dgVI~~~g~~~~-~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~--- 690 (1068)
T PRK12815 617 --LTLEDVLNVAEAENIKGVIVQFGGQTA-INLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLT--- 690 (1068)
T ss_pred --CCHHHHHHHHhhcCCCEEEEecCcHHH-HHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEE---
Confidence 247999999999999999998875532 34678888999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+|+.++++++||||||||+.++||+|+++|+|.+||..+++.+ .....+++||+
T Consensus 691 --------------------~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~--~s~~~~vlIee 748 (1068)
T PRK12815 691 --------------------ATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN--ASQLYPILIDQ 748 (1068)
T ss_pred --------------------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh--hcCCCCEEEEE
Confidence 78999999999999999999999999999999999999999999987 34567899999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccc--cce-EEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQK-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~qK-iieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|++| .|++|++++|+....+ ....+ .+.+. |.. .....|+..++++..++|.+.+.++++++|+.|++++||++
T Consensus 749 fI~G-~E~~Vd~i~dg~~v~i-~~i~e-~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v 825 (1068)
T PRK12815 749 FIDG-KEYEVDAISDGEDVTI-PGIIE-HIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVL 825 (1068)
T ss_pred eecC-ceEEEEEEEcCCceEE-eeEEE-EeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEE
Confidence 9976 7999999999743322 21111 00111 110 11123555688899999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch-------------------hhhhcccccCCCc
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP-------------------EIRRFYGMEHGGV 413 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip-------------------dir~~yg~~~~~~ 413 (2304)
+ ++++|+||+|||+++..|+...++|+|++++.+++++|.++..+. .+.+|.|.|+. +
T Consensus 826 ~--~~~~yviEiNpR~s~t~~~~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p~f~f~~~~~~~~~-l 902 (1068)
T PRK12815 826 A--NDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMPVFSYLKYPGVDNT-L 902 (1068)
T ss_pred E--CCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEeccCChhHcccCCCc-c
Confidence 8 688999999999999999989999999999999999999876431 23455566654 4
Q ss_pred ccccccccc
Q 000086 414 YDAWRKTSV 422 (2304)
Q Consensus 414 ~~~~~~~~~ 422 (2304)
+++||+||+
T Consensus 903 g~~m~stGe 911 (1068)
T PRK12815 903 GPEMKSTGE 911 (1068)
T ss_pred CCcceEcce
Confidence 677777775
|
|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-31 Score=357.26 Aligned_cols=376 Identities=14% Similarity=0.170 Sum_probs=285.1
Q ss_pred ccEEEEECch--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccCHHHHH
Q 000086 48 IHSILIANNG--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYANVQLIV 124 (2304)
Q Consensus 48 ~~kILIan~G--~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir-~ADe~v~vp~~~~~~sY~dvd~Ii 124 (2304)
.++|++++.+ ..+..++++++++||+++ + ++ ++.. ..++.+ .+|+.+.. ++.|.+.++
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi---------~-v~-~~~~-~~~~~~~~~~~~~~~-------d~~d~~~l~ 62 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPY---------F-LT-ANRG-KYPFLDAIRVVTISA-------DTSDPDRIH 62 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEE---------E-Ee-CCch-hhchhhhcceeEEEc-------CCCCHHHHH
Confidence 3678888754 355778999999999985 1 22 1221 113333 46766665 456789999
Q ss_pred HHHHHc-CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 125 EMAEMT-RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 125 ~iA~~~-~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
+++++. .+++|+++.+...+ ..+..++..| ++||+++++..++||..++++++++|||+|+|..
T Consensus 63 ~~~~~~~~i~~V~~~se~~v~--~aa~lae~lg--lpg~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~----------- 127 (887)
T PRK02186 63 RFVSSLDGVAGIMSSSEYFIE--VASEVARRLG--LPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHA----------- 127 (887)
T ss_pred HHHHhcCCCCEEEeCchhhHH--HHHHHHHHhC--cCCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE-----------
Confidence 999987 68999988543322 1345555567 5689999999999999999999999999999775
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+++.++++++|||+||||..|+||+||++|+|.+|+.++++.+... ...+++||+|++| +|+
T Consensus 128 ------------v~~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~-~~~~~lvEEfI~G-~E~ 193 (887)
T PRK02186 128 ------------LALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-GTRAALVQAYVEG-DEY 193 (887)
T ss_pred ------------eCCHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhc-CCCcEEEeecccC-CcE
Confidence 67888998888999999999999999999999999999999999887643 3568999999987 799
Q ss_pred eEEEEEcCCCCEE-EeeccccccccccceEEE---eCCCCCCCHHHHHHHHHHHHHHHHHCCce-eeeEEEEEEEccCCc
Q 000086 284 EVQLLCDQYGNVA-ALHSRDCSVQRRHQKIIE---EGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGE 358 (2304)
Q Consensus 284 eVqvl~D~~G~vi-~l~~RdcSvqrr~qKiie---eaPa~~l~~e~~~~m~e~A~rlakalGy~-Ga~tVEfl~d~~~g~ 358 (2304)
+|+++.+..+..+ .+..+... .....++ ..|++ ++++..+++.+.+.++++++|+. |++|+||+++ +++
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~---~~~~~ve~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t--~~g 267 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLG---PPPHFVEIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVR--GDT 267 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecC---CCCCeEEeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEE--CCC
Confidence 9999987543322 22221111 1122333 24665 77889999999999999999995 9999999998 578
Q ss_pred EEEEEeccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCC
Q 000086 359 YYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTR 436 (2304)
Q Consensus 359 ~yfLEINpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~ 436 (2304)
+||+|+|||++|++ .+++.++|+|+++++++.++|.++... ...
T Consensus 268 ~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i~~~lG~~~~~~----------------------------------~~~ 313 (887)
T PRK02186 268 VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVAAFAD----------------------------------PTA 313 (887)
T ss_pred EEEEEECCCCCCccHHHHHHHHHCcCHHHHHHHHhCCCCCCCC----------------------------------CCC
Confidence 99999999999985 468889999999999999999876420 011
Q ss_pred CceEEEEEEEccCCCCCCCCCCCCcccccccc-----CCCcEEEEEeeeeCCcccccCC--CccEEEEEEeCCHHHHHHH
Q 000086 437 PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFK-----SKPNVWAYFSVKSGGGIHEFSD--SQFGHVFAFGESRALAIAN 509 (2304)
Q Consensus 437 ~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~-----s~~~V~~~~~v~~G~~i~~~~D--s~~g~via~G~~reeA~~~ 509 (2304)
...+++.+.+ + |..|+|..+.+. ..+.+.....+++|..++..-| +++|+|+++|+|++++.+.
T Consensus 314 ~~~~ai~~~~-~--------~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~g~vi~~g~~~~e~~~~ 384 (887)
T PRK02186 314 KRYGAIRFVL-P--------ARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAAA 384 (887)
T ss_pred CCeEEEEEEe-c--------CCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCccEEEEEEcCCHHHHHHH
Confidence 1233343333 2 235877776542 2345555566788998876544 5799999999999999999
Q ss_pred HHHhhcceEEe
Q 000086 510 MVLGLKEIQIR 520 (2304)
Q Consensus 510 l~~AL~el~I~ 520 (2304)
+.++.+.++|+
T Consensus 385 ~~~~~~~l~~~ 395 (887)
T PRK02186 385 AERAVAGLSID 395 (887)
T ss_pred HHHHHhcCEEE
Confidence 99999999885
|
|
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=328.65 Aligned_cols=381 Identities=16% Similarity=0.136 Sum_probs=271.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
..||||+|+|.-...++.++++.++.+. +.+.|.+ ......+- ...+ .-++.|.+.|+++|
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~---------~~~~pgn----~g~~~~~~-~~~~-----~~~~~d~~~l~~~a 64 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSE---------LKVFPGN----GGFPDDEL-LPAD-----SFSILDKSSVQSFL 64 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCE---------EEEECCc----hHHhcccc-cccc-----CcCcCCHHHHHHHH
Confidence 4699999999999999999999885542 2234332 21111110 0111 12568999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCc---hHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 128 EMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
+++++|.|++|. |++. +++.|++.|++++||+..++++++||..+|++++++|||+|+|..
T Consensus 65 ~~~~iD~Vv~g~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~------------ 128 (426)
T PRK13789 65 KSNPFDLIVVGP----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKT------------ 128 (426)
T ss_pred HHcCCCEEEECC----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEe------------
Confidence 999999999984 4433 557788899999999999999999999999999999999999865
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~ 280 (2304)
+++.+++.++++++|||+||||..++||+||++|++.+|+.++++.+.... .+..++||+|++|
T Consensus 129 -----------~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G- 196 (426)
T PRK13789 129 -----------FTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG- 196 (426)
T ss_pred -----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-
Confidence 678999999999999999999999999999999999999999999876432 2357999999987
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceE------------EEeCCCCCCCHHHHHHHHH-HHHHHH---HHCC--c
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQ-AARRLA---KCVN--Y 342 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKi------------ieeaPa~~l~~e~~~~m~e-~A~rla---kalG--y 342 (2304)
+|++|.++.|+. +++.+.. . +.|++. ...+|++.+++++.+++.+ .+.+++ ++.| |
T Consensus 197 ~E~Sv~~~~dg~-~~~~lp~----~-~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~ 270 (426)
T PRK13789 197 QEASIFAISDGD-SYFLLPA----A-QDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPY 270 (426)
T ss_pred eEEEEEEEECCC-EEEEccc----e-EecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899999999863 3333311 1 123332 2346877778888888764 444555 4445 8
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCC--cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVE--HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqge--hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~ 420 (2304)
+|+.++||++++ +|++||+|+|||++.. ..+.. ..+.||.+++++++.|.....
T Consensus 271 ~Gvl~~e~~it~-~g~~~vlE~n~R~Gdpe~~~ll~-~l~~dl~~~~~~~~~g~l~~~---------------------- 326 (426)
T PRK13789 271 RGLLYAGLMISP-EGEPKVVEFNCRFGDPETQCVLA-MLDGDLLELLYAASTGKIKVV---------------------- 326 (426)
T ss_pred eEEEEEEEEEcC-CCCEEEEEEecCCCCcHhhhhhc-cCCCCHHHHHHHHHcCCCCCC----------------------
Confidence 999999999983 5669999999999631 12222 245899999999999953210
Q ss_pred cccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEE-eee-eCCcccccCCCccEEEE
Q 000086 421 SVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVF 497 (2304)
Q Consensus 421 ~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~-i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~vi 497 (2304)
.+.|. .+.++.+.+.++... ..+..|. |. +.-...+++.++. ++. .++. ...+.+++..|+
T Consensus 327 ---~~~~~---------~~~s~~vv~a~~gyp--~~~~~g~~i~-~~~~~~~~~~if~a~~~~~~~~-~~t~ggRvl~v~ 390 (426)
T PRK13789 327 ---NLKLK---------QGAAAVVVLAAQGYP--DSYEKNIPLN-LPETSGQNVVLFHAGTKKKDGK-VFSSGGRILGIV 390 (426)
T ss_pred ---Cceec---------CCceEEEEECcCCcC--CCcCCCCEEe-ccCcCCCCcEEEEeeeeeeCCE-EEeCCCeEEEEE
Confidence 12221 133444444443211 1223343 32 3211114554442 333 2232 224556788899
Q ss_pred EEeCCHHHHHHHHHHhhcceEEec
Q 000086 498 AFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 498 a~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.|+|.++|+++++++++.+++.|
T Consensus 391 ~~g~~~~~A~~~ay~~~~~i~~~~ 414 (426)
T PRK13789 391 AQGKDLKDSVDQAYSFLEKIQAPK 414 (426)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=363.10 Aligned_cols=305 Identities=20% Similarity=0.339 Sum_probs=252.2
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|+|. .++++++++|++||+++ .+..++...+....+||+.+..|
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi-----------~v~~npetvs~~~~~aD~~y~e~------ 615 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 615 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEE-----------EEeCCccccccccchhhheeecC------
Confidence 468999999987 46889999999999986 33222222334456789877643
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.++++++++++|+|++.+|.... ..++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 --~~~e~v~~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~--- 689 (1066)
T PRK05294 616 --LTLEDVLEIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGT--- 689 (1066)
T ss_pred --CCHHHHHHHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEE---
Confidence 247999999999999999987664443 24778899999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+++.++++++||||||||+.|+||+|+.+|+|.+||..+++.+....++.+++||+
T Consensus 690 --------------------~~s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEe 749 (1066)
T PRK05294 690 --------------------ATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDK 749 (1066)
T ss_pred --------------------ECCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 778999999999999999999999999999999999999999999887666677999999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccc--cc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~q-KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|++|.+|++|++++|+. +++.....+ .+.+. |. ......|+..++++..++|.+.+.++++++|+.|+++|||++
T Consensus 750 fI~G~~E~sV~~v~dg~-~v~i~~i~e-~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~ 827 (1066)
T PRK05294 750 FLEGAIEVDVDAICDGE-DVLIGGIME-HIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAV 827 (1066)
T ss_pred cCCCCEEEEEEEEecCC-eEEEeeeEE-eeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEE
Confidence 99987799999999865 332211100 00000 11 011223555688899999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
+ ++++|++|+|||+++..|+++.++|+|++++.+++++|.+++.
T Consensus 828 ~--~~~~yViEiNpR~s~t~~~~s~atGi~~~~~~~~~~lG~~l~~ 871 (1066)
T PRK05294 828 K--DDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAE 871 (1066)
T ss_pred E--CCeEEEEEEecCCCccHHHHHHHhCccHHHHHHHHHcCCChhh
Confidence 8 7899999999999999999999999999999999999998864
|
|
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=324.98 Aligned_cols=333 Identities=17% Similarity=0.209 Sum_probs=244.0
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
++.|.+.|+++|+++++|+|++|.+.... ..+.+.|++.|+.++||++++++.++||..+|++++++|||+|+|..
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l~-~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~--- 87 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPLI-DGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKE--- 87 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHHH-HHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEE---
Confidence 56788999999999999999998654222 23557888899999999999999999999999999999999999865
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+++.++++++|||+||||..|+||+||++|+|.+|+.++++.+.......+++||+
T Consensus 88 --------------------~~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe 147 (379)
T PRK13790 88 --------------------VERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFET 147 (379)
T ss_pred --------------------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 678889999999999999999999999999999999999999999876433345899999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccccceEE------------EeCCCCCCCHHHHHHH-HHHHHHHHHHC--
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKL-EQAARRLAKCV-- 340 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKii------------eeaPa~~l~~e~~~~m-~e~A~rlakal-- 340 (2304)
|++| +|++|.++.|+.+ .+.+ +|..|. |.+.. ...|++.++++..+++ ++.+.++++++
T Consensus 148 ~i~G-~E~sv~~~~~g~~-~~~~---~~~~~~-~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~ 221 (379)
T PRK13790 148 FLEG-EEFSLMTFVNGDL-AVPF---DCIAQD-HKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLN 221 (379)
T ss_pred cccC-ceEEEEEEeeCCE-EEec---cccccc-ccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 8999999998542 2221 233332 21111 2246656777766655 66667666666
Q ss_pred -C--ceeeeEEEEEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccc
Q 000086 341 -N--YVGAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDA 416 (2304)
Q Consensus 341 -G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~ 416 (2304)
| |.|+.++||+++ ++++|++|+|+|+++- ..+....+|+|+.+.+++++.|.+++.
T Consensus 222 ~g~~~~Gvl~~e~~lt--~~g~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~------------------ 281 (379)
T PRK13790 222 EGYQFFGVLYIGAILT--KDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEF------------------ 281 (379)
T ss_pred cCCCceeEEEEEEEEe--CCCeEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCce------------------
Confidence 5 479999999998 4569999999999763 234444589999999999999976531
Q ss_pred cccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCCccEE
Q 000086 417 WRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGH 495 (2304)
Q Consensus 417 ~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~ 495 (2304)
.| .+....|-+++++.|+++|..+ +.|..+.. .+...+.++. .++.+. ...++++.
T Consensus 282 ---------~~-----~~~~~~~v~~~s~gyp~~~~~~-----~~i~~~~~---~~~~~~~~~~~~~~~~~-~~ggRv~~ 338 (379)
T PRK13790 282 ---------KW-----KNESIVGVMLASKGYPDAYEKG-----HKVSGFDL---NENYFVSGLKKQGDTFV-TSGGRVIL 338 (379)
T ss_pred ---------eE-----cCCCEEEEEEccCCCCCCCCCC-----CeeeecCC---CCeEEECCccccCCeEE-ECCCeEEE
Confidence 11 1122334555555555444332 12222211 1111122222 112111 22367899
Q ss_pred EEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 496 VFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 496 via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
|++.|+|.+||+++++++++.+++.|
T Consensus 339 v~~~g~~~~~a~~~~~~~~~~i~~~~ 364 (379)
T PRK13790 339 AIGKGDNVQDAQRDAYEKVSQIQSDH 364 (379)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999998
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=318.49 Aligned_cols=293 Identities=20% Similarity=0.300 Sum_probs=238.0
Q ss_pred ccEEEEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~G--y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
|.||||+|.|... .++++++++| |+++ ++ |.+..++..++||+++.+|... +..| ++.+++
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi-----------~~--d~~~~~~~~~~~d~~~~~p~~~-~~~~--~~~l~~ 63 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVI-----------GA--DISELAPALYFADKFYVVPKVT-DPNY--IDRLLD 63 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEE-----------EE--CCCCcchhhHhccCcEecCCCC-ChhH--HHHHHH
Confidence 5799999988666 8899999995 7764 44 5557788888999999887542 3345 789999
Q ss_pred HHHHcCCCEEEeCCCcCCC-CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 126 MAEMTRVDAVWPGWGHASE-IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SE-n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
+++++++|+|+|+++.... -....+.+++.|+.+++|+++++..+.||..++++++++|||+|+|..
T Consensus 64 ~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------ 131 (326)
T PRK12767 64 ICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYL------------ 131 (326)
T ss_pred HHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEc------------
Confidence 9999999999998653221 112345677789999999999999999999999999999999999765
Q ss_pred ccCcccccccccCCHHHHHH--HhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000086 205 TIPDDVYRQACVYTTEEAIA--SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~--~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~re 282 (2304)
+.+.+++.+ ..++++||+|+||..|+||+|+++|+|.+|+.+++++. .+++||+|++| ++
T Consensus 132 -----------~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~------~~~lvqeyi~G-~e 193 (326)
T PRK12767 132 -----------PESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFIEG-QE 193 (326)
T ss_pred -----------ccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC------CCeEEEeccCC-ce
Confidence 677888877 56789999999999999999999999999999988764 38999999966 89
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+++.++.+.+|+++.+..+.....+... .. +.... ..+++.+.+.++++++||.|.+++||+++ +|++||+
T Consensus 194 ~~v~~~~~~~G~~~~~~~~~~~~~~~g~-~~---~~~~~---~~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~vi 264 (326)
T PRK12767 194 YTVDVLCDLNGEVISIVPRKRIEVRAGE-TS---KGVTV---KDPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLF 264 (326)
T ss_pred EEEEEEEcCCCCEEEEEEeeeeeecCCc-ee---EEEEc---CCHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEE
Confidence 9999999877898877655431111110 00 00001 12678899999999999999999999999 5899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
|+|||+++.++++ ..+|+|++++.++.++|.+++
T Consensus 265 EiNpR~~g~~~~~-~~~G~n~~~~~~~~~~g~~~~ 298 (326)
T PRK12767 265 EINPRFGGGYPLS-YMAGANEPDWIIRNLLGGENE 298 (326)
T ss_pred EEeCCCCCcchhh-HhhCCCHHHHHHHHHcCCCCC
Confidence 9999999998865 479999999999999999875
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=313.63 Aligned_cols=379 Identities=15% Similarity=0.167 Sum_probs=258.7
Q ss_pred EEEEECchHHHHHHHHHHHHc--CCcccccccceeEEEEEeccCCCCCChhhhhc----cEEEEccCCCCCCCccCHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTW--AYETFGTEKAILLVAMATPEDMRINAEHIRIA----DQFVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~--Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~A----De~v~vp~~~~~~sY~dvd~I 123 (2304)
||||+|+|.-...++.++++. |++++ +++.. .|....+.+ |+++.+ +..|.+.|
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~-----------~~~g~--~Npg~~~~~~~~~~~~~~~-------~~~d~~~l 61 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVY-----------ALSSY--LNPGINSVVKATGGEYFIG-------NINSPEEV 61 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEE-----------EEECC--CChhheeecccccCceEec-------CCCCHHHH
Confidence 899999999999999999998 78775 44332 233433322 444554 34678999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCC---chHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC-CCCCCccCCC
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIP---ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP-WSGSHVKIPP 199 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~---~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp-~s~~~~~~~~ 199 (2304)
+++|+++++|+|++|. |.+ .+++.|++.|++++||++++++.++||..+|++++++|||+|+ |..
T Consensus 62 ~~~a~~~~id~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~------- 130 (486)
T PRK05784 62 KKVAKEVNPDLVVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKV------- 130 (486)
T ss_pred HHHHHHhCCCEEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceE-------
Confidence 9999999999999983 444 3457888999999999999999999999999999999999985 443
Q ss_pred CCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHH-----HHHHH----HHHHhh-----
Q 000086 200 ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE-----VRALF----KQVQGE----- 265 (2304)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eE-----L~~a~----~~~~~e----- 265 (2304)
+++.+++.++++.. +||||||..++||+||++|++.++ +.+++ +.+...
T Consensus 131 ----------------~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g 193 (486)
T PRK05784 131 ----------------FYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYK 193 (486)
T ss_pred ----------------eCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhcc
Confidence 67889998888665 699999999999999999999873 33444 333211
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEe-eccccccccccceEEE------------eCC----CCCCCHHHHHH
Q 000086 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAAL-HSRDCSVQRRHQKIIE------------EGP----ITVAPLETVKK 328 (2304)
Q Consensus 266 ~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l-~~RdcSvqrr~qKiie------------eaP----a~~l~~e~~~~ 328 (2304)
..+.+++||||++| .|++|++++|+. +++.+ ..+ .|..+.+ .+| .+.++++..++
T Consensus 194 ~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~~~q------d~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~ 265 (486)
T PRK05784 194 DVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLPLAQ------DYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEE 265 (486)
T ss_pred CCCCeEEEEEccCC-eEEEEEEEECCC-eEEEeeeeE------eecceecCCCCCCCCCCcccCCccccCCCCCHHHHHH
Confidence 12568999999987 799999999864 33322 222 2333332 135 55566777666
Q ss_pred HHHHHHHHHHHC----C--ceeeeEEEEEEEccCCcEEEEEeccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000086 329 LEQAARRLAKCV----N--YVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2304)
Q Consensus 329 m~e~A~rlakal----G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ip 400 (2304)
+.+.+...++++ | |+|+.++|++++. ++++++||+|+|++.-. .+... ++.||.++.+.++.|..-.
T Consensus 266 ~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~-~~GP~vIE~n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~l~~--- 340 (486)
T PRK05784 266 AVEIVKRTIDAIYKETGERYVGVISGQMMLTE-LWGPTVIEYYSRFGDPEASNIIPR-IESDFGELFELAATGKLSK--- 340 (486)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEEEEec-CCCcEEEEEecccCCchHHHHHHh-ccCCHHHHHHHHHcCCCCC---
Confidence 666666555444 3 5699999999982 45699999999999632 33333 5669999999999996221
Q ss_pred hhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc--cCCCcEEEE-E
Q 000086 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF--KSKPNVWAY-F 477 (2304)
Q Consensus 401 dir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~--~s~~~V~~~-~ 477 (2304)
..+.|. + ..++.+-+.++.......|..|......- ...+++.++ .
T Consensus 341 ----------------------~~~~~~-----~----~~~~~vv~as~gYp~~~~~~~g~~i~~~~~~~~~~~~~v~~a 389 (486)
T PRK05784 341 ----------------------AKIKFN-----E----EPSVVKAIAPLGYPLSRDLASGRRIVVDLDKIKEEGCLVFFG 389 (486)
T ss_pred ----------------------CCeeec-----C----CceEEEEECCCCCCCcccCCCCCEEECCccccccCCCEEEEC
Confidence 112231 1 12333333333211111234443222110 011232222 2
Q ss_pred eee-eCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce-EEec
Q 000086 478 SVK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI-QIRG 521 (2304)
Q Consensus 478 ~v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el-~I~G 521 (2304)
++. .++.+ -...+++..|++.|+|.++|+++++++++.+ .+.|
T Consensus 390 g~~~~~~~~-~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~ 434 (486)
T PRK05784 390 SVELEGGQL-ITKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTK 434 (486)
T ss_pred CceeeCCEE-EEcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCC
Confidence 222 22222 2345668999999999999999999999999 8888
|
|
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=296.73 Aligned_cols=307 Identities=18% Similarity=0.255 Sum_probs=255.5
Q ss_pred EEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
+|..+. ...++...++++|+.||+++ .+.+....-..-..+||+.+..|. ..+.+..+++
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vv-----------lvnsnpAti~td~e~AD~~y~eP~--------~~E~v~~Ii~ 67 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVV-----------LVNSNPATIMTDPELADKVYIEPI--------TKEPVEKIIE 67 (400)
T ss_pred eeEeeeeechhHHHHHHHHHhcCCeEE-----------EEcCCCccccCCchhcceeeeecC--------cHHHHHHHHH
Confidence 344443 34577888999999999986 332333333333468999999984 3688999999
Q ss_pred HcCCCEEEeCCCcCCC-CCchH----HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 129 MTRVDAVWPGWGHASE-IPELP----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SE-n~~la----~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
++++|+++|+.|.... |..+. -.|++.|+.++|.+.++++.+.||..+++++++.|+|+| +.
T Consensus 68 ~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P--~~----------- 134 (400)
T COG0458 68 KERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP--SR----------- 134 (400)
T ss_pred hcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC--cc-----------
Confidence 9999999999875443 21111 123456999999999999999999999999999999999 22
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
.+++.+++.+.++.+||||||||+.+.||.|..+++|.+||.+........++-.++++||++.|..|+
T Consensus 135 -----------~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~ 203 (400)
T COG0458 135 -----------IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEF 203 (400)
T ss_pred -----------ccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEE
Confidence 167899999999999999999999999999999999999999999998888887899999999999999
Q ss_pred eEEEEEcCCCCEEEeecccc--ccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDC--SVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdc--Svqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yf 361 (2304)
+..++.|.+++++......- ..-.+.-..+..+|+..+++...+.++.++.++++.+|..|.++++|.+++.++++||
T Consensus 204 e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~v 283 (400)
T COG0458 204 EYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYV 283 (400)
T ss_pred EEEEEEeCCCCEEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEE
Confidence 99999999999988732221 1112223556788999999999999999999999999999999999999987779999
Q ss_pred EEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 362 LEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
+|+|||++++..+.+.+||..+.+....+|.|..++.|
T Consensus 284 iEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei 321 (400)
T COG0458 284 IEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEI 321 (400)
T ss_pred EEecCCcCcchhhhhhccCChHHHHHHHhhcccCchhh
Confidence 99999999999999999998888888889999888764
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=274.77 Aligned_cols=373 Identities=18% Similarity=0.236 Sum_probs=294.1
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
+|||.+|.|+.+..+...|.++|.+++ ++ |...+++..+.|++.+.+ +.+|.+.|..+.+
T Consensus 13 ~kvmLLGSGELGKEvaIe~QRLG~eVi-----------AV--DrY~~APAmqVAhrs~Vi-------~MlD~~al~avv~ 72 (394)
T COG0027 13 TKVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVI-------DMLDGDALRAVVE 72 (394)
T ss_pred eEEEEecCCccchHHHHHHHhcCCEEE-----------Ee--cCcCCChhhhhhhheeee-------eccCHHHHHHHHH
Confidence 689999999999999999999999986 66 888999999999999998 5689999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|.|+|-..- .+.+-...+++.|+.++ |...+.+.+.|+...|+++ +++|+||.+|..
T Consensus 73 rekPd~IVpEiEA--I~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~f--------------- 134 (394)
T COG0027 73 REKPDYIVPEIEA--IATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRF--------------- 134 (394)
T ss_pred hhCCCeeeehhhh--hhHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccc---------------
Confidence 9999999987442 33334567888999877 9999999999999999876 679999999887
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~i~VEeyI~g~reieV 285 (2304)
+.|.+|..++++++||||++||..++.|||-.+|.++++++.+|+.++.... +..+++|+|++- ++++
T Consensus 135 --------a~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~f--d~Ei 204 (394)
T COG0027 135 --------ADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKF--DFEI 204 (394)
T ss_pred --------cccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecc--eEEE
Confidence 7899999999999999999999999999999999999999999999886654 358999999976 5555
Q ss_pred EEE--EcCCCCEEEeecccccc----ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 286 QLL--CDQYGNVAALHSRDCSV----QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 286 qvl--~D~~G~vi~l~~RdcSv----qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
.++ +..+|+-. -|.- |-+....-.+-|.. +++...++....|.++.++||-.|.+.||+++. .++.
T Consensus 205 TlLtvr~~~~~~~-----Fc~PIGHrq~dgdY~ESWQP~~-mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV 276 (394)
T COG0027 205 TLLTVRAVDGTGS-----FCAPIGHRQEDGDYRESWQPQE-MSEAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEV 276 (394)
T ss_pred EEEEEEEecCCCC-----cCCCcccccCCCChhcccCccc-cCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEE
Confidence 544 33333321 1332 22222223345776 889999999999999999999999999999998 7899
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||-|+.||+..+.-+|-..-+++-++++++..+|.|++.|+ . || +...
T Consensus 277 ~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi~~i~---~-~~----------------------------P~AS 324 (394)
T COG0027 277 IFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPIPEIR---Q-IS----------------------------PAAS 324 (394)
T ss_pred EEeecCCCCCCCceEEEEeccchHHHHHHHHHhCCCcccee---e-ec----------------------------cccc
Confidence 99999999998887776667999999999999999987532 1 11 1235
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
|+|-+-.++.+|. -.|.-..+..|. ..|+.+ |..-.+-.-++|-.++++++-++|++++..+.+.+.|
T Consensus 325 ~vI~~~~~~~~~~-----f~~l~~AL~~p~-t~vRlF------GKP~~~~~RRmGVALA~a~~Ve~Are~A~~aa~~i~v 392 (394)
T COG0027 325 AVILAQETSQAPT-----FDGLAEALGVPD-TQVRLF------GKPEADGGRRLGVALATAESVEEARERARKAASAIEV 392 (394)
T ss_pred ceeeccccccCCc-----hhhHHHHhcCCC-ceEEEe------cCCcccCCceeeEEEecCccHHHHHHHHHHHHhheec
Confidence 6666666555431 123334444432 234433 1111111235899999999999999999999999887
Q ss_pred ec
Q 000086 520 RG 521 (2304)
Q Consensus 520 ~G 521 (2304)
.+
T Consensus 393 ~~ 394 (394)
T COG0027 393 KG 394 (394)
T ss_pred CC
Confidence 53
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=279.20 Aligned_cols=296 Identities=20% Similarity=0.293 Sum_probs=253.7
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
+++|.|+|+|..|.++..+++++||+++ +. |.+++++..+.||..+.. .|.|.+.+.+++
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~-----------vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela 60 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVI-----------VL--DPDADAPAAQVADRVIVA-------AYDDPEALRELA 60 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEE-----------Ee--cCCCCCchhhcccceeec-------CCCCHHHHHHHH
Confidence 4689999999999999999999999985 33 777899999999999885 567899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
.+. |+|. |+|..-+.+..+.|.+. ..+ -|++++++...||+..|.+++++|+|+|||..
T Consensus 61 ~~~--DViT--~EfE~V~~~aL~~l~~~-~~v-~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~--------------- 119 (375)
T COG0026 61 AKC--DVIT--YEFENVPAEALEKLAAS-VKV-FPSPDALRIAQDRLVEKQFLDKAGLPVAPFQV--------------- 119 (375)
T ss_pred hhC--CEEE--EeeccCCHHHHHHHHhh-cCc-CCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEE---------------
Confidence 876 8887 55555555566777776 333 49999999999999999999999999999987
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+|+..+++++|||+|+|.+.|| -|||.+++.+.+++......... +...++|+|++-.+|++|-
T Consensus 120 --------v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~---~~~~vlE~fV~F~~EiSvi 188 (375)
T COG0026 120 --------VDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAE---GGVPVLEEFVPFEREISVI 188 (375)
T ss_pred --------eCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhc---cCceeEEeecccceEEEEE
Confidence 88999999999999999999999988 99999999999998875554331 1233999999999999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
+..+..|++.++.. -..+++..-.....+|+. +++++.++.+++|.++++.|+|+|+..|||++++ +|++++.|+.|
T Consensus 189 ~aR~~~G~~~~yP~-~eN~h~~gIl~~siaPa~-i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg~llvNEiAP 265 (375)
T COG0026 189 VARSNDGEVAFYPV-AENVHRNGILRTSIAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DGELLVNEIAP 265 (375)
T ss_pred EEEcCCCCEEEecc-cceeeecCEEEEEEecCc-CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CCcEEEeeccC
Confidence 99998898887533 335565554445678985 8888999999999999999999999999999994 67999999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
|+..+...|...+.++.++.+|+..+|.||+.
T Consensus 266 RvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~ 297 (375)
T COG0026 266 RVHNSGHWTIDGCETSQFEQHLRAVLGLPLGS 297 (375)
T ss_pred CCCCccccchhhccccHHHHHHHHHhCCCCCC
Confidence 99999888888999999999999999999963
|
|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=289.66 Aligned_cols=289 Identities=26% Similarity=0.386 Sum_probs=235.1
Q ss_pred EECch-HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcC
Q 000086 53 IANNG-MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTR 131 (2304)
Q Consensus 53 Ian~G-~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~ 131 (2304)
..|+| ..+..+|+++|+. . .+.++++ +.+.+++....||+++..|. +.+.| ++.++++|++++
T Consensus 3 wfn~~~s~~~~~i~~lr~~--~--------~~~i~~s--h~~~~~~~~~~aD~~~~eP~--~~~~y--v~~~l~~C~~~~ 66 (329)
T PF15632_consen 3 WFNRGFSSQRDIIRSLRAN--R--------DFTIIAS--HRDPRAPILYAADEAYLEPA--DGEEY--VDWCLDFCKEHG 66 (329)
T ss_pred EecCCCccHHHHHHHHHcC--C--------CeEEEEE--eCCCCchHHhcCceeeecCC--CHHHH--HHHHHHHHHHhC
Confidence 44554 4667889999975 1 2234466 66689999999999999997 66788 899999999999
Q ss_pred CCEEEeCCCcCCCCCchHHHHHHCCCeEEC-CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 132 VDAVWPGWGHASEIPELPDTLSTKGIIFLG-PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 132 vDaV~pG~G~~SEn~~la~~l~~~GI~fiG-Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
+|+++||+.... -....+.+++.|+.+.- ++.+++..+.||..+.+.+++.|||+|+|..
T Consensus 67 Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~------------------ 127 (329)
T PF15632_consen 67 IDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWR------------------ 127 (329)
T ss_pred CeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEE------------------
Confidence 999999965332 12233666778999987 8899999999999999999999999999987
Q ss_pred ccccccCCHHHHHHHhhccCCc---EEEeecCCCCCcCeEEEC-CHHHHHHHHH-------------HHHhhCCCCcEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYP---AMIKASWGGGGKGIRKVH-NDDEVRALFK-------------QVQGEVPGSPIFI 273 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyP---VVIKPs~GgGGkGIr~V~-s~eEL~~a~~-------------~~~~e~~~~~i~V 273 (2304)
+++.++...+++++++| +.|||..|.||.|.|+++ +.+++...++ .+.....-.+++|
T Consensus 128 -----v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llv 202 (329)
T PF15632_consen 128 -----VRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLV 202 (329)
T ss_pred -----eCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEE
Confidence 89999999999988887 999999999999999999 5555555444 1111112358999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEE
Q 000086 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2304)
Q Consensus 274 EeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d 353 (2304)
|+|++| .|++|+++++. |++++..+|.-. -+.|.+ +...++.+.|.++++.+|..|..+|+|++|
T Consensus 203 MeyL~G-~EySVD~l~~~-G~viaaV~R~K~--G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d 267 (329)
T PF15632_consen 203 MEYLPG-PEYSVDCLADE-GRVIAAVPRRKL--GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYD 267 (329)
T ss_pred ecCCCC-CeEEEEEEecC-CEEEEEEEEEec--CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEc
Confidence 999988 69999999997 999877655422 112222 234678999999999999999999999997
Q ss_pred ccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
.+|.+++||||||++|+.+.+- .+|||||.+.+..++|.+.+.
T Consensus 268 -~~g~p~LLEINpR~sGGi~~s~-~aGvNlp~la~~~~lG~~~~~ 310 (329)
T PF15632_consen 268 -EDGNPKLLEINPRPSGGIGYSC-AAGVNLPYLAVKLALGEPIPP 310 (329)
T ss_pred -CCCCEEEEEeCCCCccchhhHh-hcCCChHHHHHHHHcCCCCCC
Confidence 4889999999999999998886 699999999999999998763
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=290.23 Aligned_cols=213 Identities=17% Similarity=0.231 Sum_probs=172.7
Q ss_pred cCCCCChHHHhhcccCCCCCcccccccCCCceecccC--CC--CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCC
Q 000086 1893 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--WA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1968 (2304)
Q Consensus 1893 P~~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~--~a--~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~ 1968 (2304)
|.+||| +++|+. +|| +|+|+..+ |+ +++|||+|||+|+||+|||++++..
T Consensus 67 ~~Rp~~-~d~I~~-----------l~d--~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~------------ 120 (319)
T PRK05724 67 PQRPYT-LDYIEL-----------LFT--DFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRD------------ 120 (319)
T ss_pred CCCCCH-HHHHHH-----------Hhh--HHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCcc------------
Confidence 338999 488887 677 69999988 67 9999999999999999999975422
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1969 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1969 s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
. ...+.+.+|+++|++++|++||+++|++|++|||+|+||+||.+|..+|..|+.+++++.+.+++..+||+|++|+
T Consensus 121 ~-~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIi-- 197 (319)
T PRK05724 121 T-KEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVI-- 197 (319)
T ss_pred c-cccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEe--
Confidence 1 2223456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHH
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES 2128 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~ 2128 (2304)
|+.+||+..+++. +|+ ++|||+|.++||+|||++.|.||+.+.. ++.++
T Consensus 198 Geg~sGGAla~~~---aD~--v~m~~~A~~svisPEg~a~Il~~~~~~a--------------------------~~aae 246 (319)
T PRK05724 198 GEGGSGGALAIGV---GDR--VLMLEYSTYSVISPEGCASILWKDASKA--------------------------PEAAE 246 (319)
T ss_pred CCccHHHHHHHhc---cCe--eeeecCceEeecCHHHHHHHHhcCchhH--------------------------HHHHH
Confidence 5555554444443 577 9999999999999999999999875110 00000
Q ss_pred HHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHHH
Q 000086 2129 LQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2129 ~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l~ 2189 (2304)
.+.-||..|++.|+||+||+.. .....++.+|+..|.
T Consensus 247 ------------------------~~~ita~~l~~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~ 288 (319)
T PRK05724 247 ------------------------AMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALL 288 (319)
T ss_pred ------------------------HcCCCHHHHHHCCCceEeccCCCCCccCCHHHHHHHHHHHHH
Confidence 1223788999999999999843 334557777777654
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=283.61 Aligned_cols=211 Identities=20% Similarity=0.261 Sum_probs=171.0
Q ss_pred cCCCCChHHHhhcccCCCCCcccccccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCC
Q 000086 1893 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1968 (2304)
Q Consensus 1893 P~~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~ 1968 (2304)
|.+|||+ ++|.. +|| +|+|+.++|+ +++|||+|||+|+||+|||++.+. +
T Consensus 67 ~~Rp~~~-d~i~~-----------l~d--~f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g~------------~ 120 (316)
T TIGR00513 67 PDRPYTL-DYIEL-----------IFD--DFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGR------------D 120 (316)
T ss_pred CCCCchH-HHHHH-----------Hhh--hheeeccccCCCCCCceEEEEEEECCEEEEEEEecCCc------------c
Confidence 3389999 88887 788 4999999888 999999999999999999997431 1
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1969 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1969 s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++ +...+|.++|.+++|++|++++|+++++|||+|+||+||.+|...|..|+.+++++.+.+++..+||+|++|+
T Consensus 121 ~~e~-~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVVi-- 197 (316)
T TIGR00513 121 TKEK-LRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVI-- 197 (316)
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe--
Confidence 2233 3455789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcC-CchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHH
Q 000086 2049 AEL-RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVE 2127 (2304)
Q Consensus 2049 ge~-~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~ 2127 (2304)
|++ .||||.+. .+|+ ++|||+|.++||+|||++.|.||+.+.. ++
T Consensus 198 GeggsGGAla~~----~aD~--v~m~~~a~~sVisPEg~a~Il~kd~~~a--------------------------~~-- 243 (316)
T TIGR00513 198 GEGGSGGALAIG----VGDK--VNMLEYSTYSVISPEGCAAILWKDASKA--------------------------PK-- 243 (316)
T ss_pred cccccHHHhhhc----cCCE--EEEecCceEEecCHHHHHHHhccchhhH--------------------------HH--
Confidence 454 55666443 2587 9999999999999999999999965110 00
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHH
Q 000086 2128 SLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRV 2188 (2304)
Q Consensus 2128 ~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l 2188 (2304)
|.++ +.-||..+++.|+||+||+.. .-...++.+|+..|
T Consensus 244 --------------------aae~--~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~ 287 (316)
T TIGR00513 244 --------------------AAEA--MKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQL 287 (316)
T ss_pred --------------------HHHH--ccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHH
Confidence 0111 122688999999999999843 33345666666654
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=289.90 Aligned_cols=249 Identities=19% Similarity=0.213 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHcCC-CEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccC
Q 000086 119 NVQLIVEMAEMTRV-DAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKI 197 (2304)
Q Consensus 119 dvd~Ii~iA~~~~v-DaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~ 197 (2304)
....++++.++.+. ..+. |++|+..++..|+..||+++||+++++..+.||..+|++++++|||+|||...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~----fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~---- 163 (493)
T PRK06524 92 RHPETLEFIKRRGPGGKAC----FVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLG---- 163 (493)
T ss_pred cCHHHHHHHHhhCCCCceE----EecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccc----
Confidence 34456666666654 2222 78999999999999999999999999999999999999999999999998750
Q ss_pred CCCCcccccCcccccccccCCHHHHHHHhhc--cCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 198 PPESCLVTIPDDVYRQACVYTTEEAIASCQV--VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 198 ~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~--IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
.+.+.+++...++. +||||||||..|++|+|+++|++.+|+..+++.+.. ...++||+
T Consensus 164 -----------------~~~~~eel~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe 223 (493)
T PRK06524 164 -----------------RVDSYDELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMK 223 (493)
T ss_pred -----------------cCCCHHHHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEe
Confidence 13456666666654 999999999999999999999999999998887653 25799999
Q ss_pred eccccceeeEEEEEcCCCCEEEeec------cccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHC---Cceeee
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHS------RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVGAA 346 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~------RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakal---Gy~Ga~ 346 (2304)
|+.+ +|++|+++.+.+|+++.... +++..++.+.......|+. +++++.+++.+.|.+++++| ||.|.+
T Consensus 224 ~I~G-rEitVev~vd~dG~Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~ 301 (493)
T PRK06524 224 RIRN-VEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYF 301 (493)
T ss_pred ccCc-EEEEEEEEEeCCCCEEeccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 9965 89999999998888764321 1121122222223456875 88999999999999999988 899999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCcceehhhh----cCCHHHHHHHHHcCCCCC
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIA----EINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vt----GVDL~~~qL~iA~G~pL~ 397 (2304)
+|||+++.++|++||+|||||++|+|+++++++ +.+++..+++..||.|..
T Consensus 302 rVDFfvd~ddgevYfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 302 EVDLLHDLDADELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred EEEEEEECCCCeEEEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 999999854688999999999999999998854 455566677788898865
|
|
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=267.18 Aligned_cols=333 Identities=20% Similarity=0.231 Sum_probs=250.2
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~ 194 (2304)
.|.+.|+++|++.++|.+++| .|.|. +.+.|++.||..+||+.+++++-++|..+|.+++++|||++.|..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVG----PE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~-- 123 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVG----PEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEV-- 123 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEEC----CcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccc--
Confidence 568999999999999999999 33333 348999999999999999999999999999999999999998765
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCc
Q 000086 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSP 270 (2304)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~ 270 (2304)
+++.+++.++.++.|.|++|||..-.+||||.++.+.++..++.+.+... ..+..
T Consensus 124 ---------------------f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~ 182 (428)
T COG0151 124 ---------------------FTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGAR 182 (428)
T ss_pred ---------------------cCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCc
Confidence 67999999999999999999999999999999999999999998877654 23467
Q ss_pred EEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEe------------CCCCCCCHHHHHHHH-HHHHHHH
Q 000086 271 IFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEE------------GPITVAPLETVKKLE-QAARRLA 337 (2304)
Q Consensus 271 i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiiee------------aPa~~l~~e~~~~m~-e~A~rla 337 (2304)
++||+|++| .|++++++.|+. +++.+. .. ..|.++.+. +|+|.+++++.++.. +.....+
T Consensus 183 VVIEEfL~G-eE~S~~a~~DG~-~v~p~p----~a-QDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv 255 (428)
T COG0151 183 VVIEEFLDG-EEFSLQAFVDGK-TVIPMP----TA-QDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTV 255 (428)
T ss_pred EEEEecccc-eEEEEEEEEcCC-eEEECc----cc-cccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999987 799999999975 444432 22 346555552 588989998777655 5555555
Q ss_pred HHC-----CceeeeEEEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCC
Q 000086 338 KCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHG 411 (2304)
Q Consensus 338 kal-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~ 411 (2304)
+.+ .|+|+....++++ .++|++||.|.|++- |....-....-||.+..+.++.|.--+
T Consensus 256 ~gm~~EG~~f~GvLy~glMlt--~~GPkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~L~~-------------- 319 (428)
T COG0151 256 EGMAKEGYPFRGVLYAGLMLT--ADGPKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGKLDE-------------- 319 (428)
T ss_pred HHHHHcCCCceEEEEeEEEEc--CCCcEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCCccc--------------
Confidence 544 5789999999999 455999999999973 322222335679999999999995321
Q ss_pred CcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc-cCCCcEEEE-EeeeeC-Cccccc
Q 000086 412 GVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF-KSKPNVWAY-FSVKSG-GGIHEF 488 (2304)
Q Consensus 412 ~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~-~s~~~V~~~-~~v~~G-~~i~~~ 488 (2304)
..+.|. +.....+.+++++-|+++| ..|....+.. ....++.++ .++... +.--..
T Consensus 320 -----------~~~~~~----~~~a~v~vvlA~~GYP~~~------~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~lvt 378 (428)
T COG0151 320 -----------VEILFW----DKGAAVGVVLAAEGYPGDP------EKGDVITGDEEAEEEGAKVFHAGVKLDDGGQLVT 378 (428)
T ss_pred -----------cchhhc----cCCceEEEEEecCCCCCCC------CCCCEEecChhhcccCcEEEEeeEeccCCceEEe
Confidence 011121 1123346677777777764 4564332221 111244333 344432 212233
Q ss_pred CCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 489 SDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 489 ~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
..++.-.|++.|+|.+||+++++.+++.++..|
T Consensus 379 ~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g 411 (428)
T COG0151 379 SGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDG 411 (428)
T ss_pred cCCeEEEEEecCCCHHHHHHHHHHHHhhcCCCC
Confidence 456778899999999999999999999999988
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=281.49 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=149.6
Q ss_pred CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcC-----CCEEEEEcCCCCCCCchhh
Q 000086 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKK-----LPLIYLAANSGARIGVAEE 1696 (2304)
Q Consensus 1622 n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~-----lP~I~l~~s~GARi~~~e~ 1696 (2304)
-+.|||++..++ +||+|+|+++|+||++||+|+++++|+.++.|+|.+.+ +|+|+|.+|||+||+ |+
T Consensus 54 ~~dGvV~G~G~I------~Gr~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlq--Eg 125 (301)
T PRK07189 54 FDDGVVVGKGTL------DGRPVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQ--EA 125 (301)
T ss_pred CCCcEEEEEEEE------CCEEEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCcc--ch
Confidence 457999999876 99999999999999999999999999999999999999 999999999999999 88
Q ss_pred hhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccc
Q 000086 1697 VKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1776 (2304)
Q Consensus 1697 v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~a 1776 (2304)
..++++++ .+|. .+.+.||.
T Consensus 126 ~~~L~~~a------------~i~~----------------------------------------~~~~ls~~-------- 145 (301)
T PRK07189 126 NAGLAAIA------------EIMR----------------------------------------AIVDLRAA-------- 145 (301)
T ss_pred HHHHHHHH------------HHHH----------------------------------------HHHHHhCC--------
Confidence 87775443 1111 11122332
Q ss_pred cccceEEEEEcCc--ccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccc-------cCcceeecccCce
Q 000086 1777 YKETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQ-------LGGPKIMATNGVV 1847 (2304)
Q Consensus 1777 y~~iptis~vtg~--t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~-------lGG~~i~~~nGv~ 1847 (2304)
||+|++++|+ |+||+||.+.+||++||++++.|+|+||++|++++|.+.| ++++ +||...+ .||++
T Consensus 146 ---VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~-d~~d~~~vw~~lGG~h~~-~sG~~ 220 (301)
T PRK07189 146 ---VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEF-DSRDRALVWRTTGGKHRY-LSGLA 220 (301)
T ss_pred ---CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCccc-CHHHhcccccccCcceee-ecccc
Confidence 6999999999 9999999999999999999999999999999999996554 4566 9997443 59999
Q ss_pred EEEecCcHHHHHHHHHHHhcCCC
Q 000086 1848 HLTVSDDLEGISAILKWLSYVPP 1870 (2304)
Q Consensus 1848 d~~v~dd~~~~~~i~~~LsylP~ 1870 (2304)
|.+|+||.++++. ++++|+..
T Consensus 221 D~~v~dd~~a~~~--~~~~~~~~ 241 (301)
T PRK07189 221 DALVDDDVAAFRA--AALALLAR 241 (301)
T ss_pred eEEeCCHHHHHHH--HHHHHHhc
Confidence 9999999999998 78899864
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-27 Score=276.96 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=145.9
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHH-----cCCCEEEEEcCCCCCCCchhhh
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACA-----KKLPLIYLAANSGARIGVAEEV 1697 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~-----~~lP~I~l~~s~GARi~~~e~v 1697 (2304)
+.|||++..++ +||+|+|+++|+||++||+|+++++|+.+++++|.+ .++|+|+|.+|||+||| |++
T Consensus 46 ~dgvV~G~G~I------~Gr~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlq--Eg~ 117 (274)
T TIGR03133 46 DDGVVVGRGTI------DGKPVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQ--EAN 117 (274)
T ss_pred CCeEEEEEEEE------CCEEEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChh--hhH
Confidence 57899999876 999999999999999999999999999999999998 67999999999999998 888
Q ss_pred hhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccccc
Q 000086 1698 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAY 1777 (2304)
Q Consensus 1698 ~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay 1777 (2304)
.+|++++ .+|. .+.+.||.
T Consensus 118 ~~L~~~a------------~i~~----------------------------------------~~~~ls~~--------- 136 (274)
T TIGR03133 118 AGLIAIA------------EIMR----------------------------------------AILDARAA--------- 136 (274)
T ss_pred HHHHHHH------------HHHH----------------------------------------HHHHHhCC---------
Confidence 8886554 1111 01122232
Q ss_pred ccceEEEEEcCc--ccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccccc------ccCcceeecccCceEE
Q 000086 1778 KETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM------QLGGPKIMATNGVVHL 1849 (2304)
Q Consensus 1778 ~~iptis~vtg~--t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~------~lGG~~i~~~nGv~d~ 1849 (2304)
||+|++++|| |+||+||+++++|++||++++.|+|+||++|++++|++.|++.+ .+||+.. +.+|++|.
T Consensus 137 --vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~-~~sG~~D~ 213 (274)
T TIGR03133 137 --VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHR-FLSGDADV 213 (274)
T ss_pred --CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhH-hhcccceE
Confidence 6999999999 89999999999999999999999999999999999987665543 5999964 45999999
Q ss_pred EecCcHHHHHHHH-HHHh
Q 000086 1850 TVSDDLEGISAIL-KWLS 1866 (2304)
Q Consensus 1850 ~v~dd~~~~~~i~-~~Ls 1866 (2304)
+++||.++++... ++|.
T Consensus 214 ~v~dd~~a~~~~~~~~l~ 231 (274)
T TIGR03133 214 LVEDDVDAFRAAVIAALA 231 (274)
T ss_pred EeCCHHHHHHHHHHHHHh
Confidence 9999999997654 4554
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=267.00 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=141.1
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc--CCCC--eEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCcc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--GWAR--TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSH 1970 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~--~~a~--~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~ 1970 (2304)
....+|+.|+. |||. |+|+.+ .|++ ++|||+|||+|+||+|||++.+.. ..
T Consensus 15 ~r~~are~I~~-----------L~D~--F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~------------~~ 69 (256)
T PRK12319 15 GRLTTLDYATL-----------IFDD--FMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKN------------LQ 69 (256)
T ss_pred CCCCHHHHHHH-----------hCch--heeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCc------------cc
Confidence 34567888886 7885 999975 4664 699999999999999999965411 11
Q ss_pred ccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1971 ERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1971 ~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
+. ....+|+++|++++|++||+++|+++++|||+|+||+||.+|...|..|+.+.+++++.+++..+||+|++|+ |+
T Consensus 70 d~-~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~--G~ 146 (256)
T PRK12319 70 DN-LKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIII--GE 146 (256)
T ss_pred cc-eeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEe--CC
Confidence 11 2345799999999999999999999999999999999999999999999999999999999999999999999 55
Q ss_pred CCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchh
Q 000086 2051 LRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2051 ~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
++||+..++. .+|+ ++|||++.++||+|||++.|.||+.
T Consensus 147 ~~gGgA~a~~---~~D~--v~m~~~a~~~v~~pe~~a~il~~~~ 185 (256)
T PRK12319 147 GGSGGALALA---VADQ--VWMLENTMYAVLSPEGFASILWKDG 185 (256)
T ss_pred cCcHHHHHhh---cCCE--EEEecCceEEEcCHHHHHHHHhcCc
Confidence 5665444443 3688 9999999999999999999999864
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-26 Score=262.16 Aligned_cols=183 Identities=23% Similarity=0.302 Sum_probs=157.2
Q ss_pred cccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000086 1913 WIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1992 (2304)
Q Consensus 1913 ~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~ 1992 (2304)
|+..|||.++|+|..+ ++|||+|||+|+|||||+++. +..++.++++|.|+|
T Consensus 5 ~l~~l~d~~~~~e~~~----~vv~G~arl~G~~V~vIa~~~------------------------~~~~g~~~~~k~A~~ 56 (238)
T TIGR03134 5 WLAALFPNGHEVAGDP----GVLVGSAELAGGKVTVIGVVP------------------------DAEVGLDEALALAQA 56 (238)
T ss_pred HHHHHcCCCcEEecCC----cEEEEEEEECCEEEEEEEECC------------------------CCcCChHHHHHHHHH
Confidence 4555899999999986 999999999999999999942 226777999999999
Q ss_pred HHHh-h-ccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC---CCEEEEEcCCCcCCchhhhhcccccCCcc
Q 000086 1993 LMDF-N-REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSDH 2067 (2304)
Q Consensus 1993 i~~~-~-~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~~I~~~ge~~GGa~vv~~~~i~~d~ 2067 (2304)
+.+| + +|++|||+|+|||||.+|.++|..|+.+++|+++++++.++ +|+|++|+ |+.+||+|++++ +++|.
T Consensus 57 v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~--g~a~ggg~lamg--~~ad~ 132 (238)
T TIGR03134 57 VLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIY--GKAISGAFLAHG--LQADR 132 (238)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEe--CCccHHHHHHHc--cCcCe
Confidence 9996 5 59999999999999999999999999999999999999887 99999999 788999999995 56788
Q ss_pred ceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHH
Q 000086 2068 IEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQV 2147 (2304)
Q Consensus 2068 ~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~ 2147 (2304)
+||||+|.++||+||+++.|.||+.+.+ + ++
T Consensus 133 --v~Alp~A~i~vm~~e~aa~I~~~~~~~~-----------------------------~------------------e~ 163 (238)
T TIGR03134 133 --IIALPGAMVHVMDLESMARVTKRSVEEL-----------------------------E------------------AL 163 (238)
T ss_pred --EEEcCCcEEEecCHHHHHHHHccCHhHH-----------------------------H------------------HH
Confidence 9999999999999999999999865211 0 11
Q ss_pred HHHhhhhcccHHHHHHcCCcceecCccch
Q 000086 2148 ATKFAELHDTSLRMAAKGVIKEVVDWDKS 2176 (2304)
Q Consensus 2148 a~~fad~hdt~~rm~~~G~Id~vi~~~~t 2176 (2304)
|..|..+..++..+.+.|+||+||++.+.
T Consensus 164 a~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 164 AKSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred HHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 22333344567889999999999998884
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=285.21 Aligned_cols=279 Identities=14% Similarity=0.158 Sum_probs=208.1
Q ss_pred CccEEEEECchH-HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC-CCCCccCHHHHH
Q 000086 47 PIHSILIANNGM-AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT-NNNNYANVQLIV 124 (2304)
Q Consensus 47 ~~~kILIan~G~-~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~-~~~sY~dvd~Ii 124 (2304)
..+||||+|++. .++.++|++++.|++++ ++.++....+.+.+++|+++.+|... ..+.| ++.|+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi-----------~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~ 69 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVI-----------LADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALL 69 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-----------EEeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHH
Confidence 457999999765 79999999999999985 33333333456788999999986432 23456 79999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++++++++|+|+|+.+.........+.++ .++.+++|+.++++.+.||..++++++++|||+|++..
T Consensus 70 ~i~~~~~id~vIP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~------------ 136 (389)
T PRK06849 70 SIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYL------------ 136 (389)
T ss_pred HHHHHcCCCEEEECChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEE------------
Confidence 99999999999999763311111122232 35778899999999999999999999999999999775
Q ss_pred ccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+++.+++.+++.+. |||+|+||..|+||.|+.++.+.+.+... . .....++++|||++| .++
T Consensus 137 -----------v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~----~-~~~~~~~ivQe~I~G-~e~ 199 (389)
T PRK06849 137 -----------ITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKEL----P-ISKDNPWVMQEFIQG-KEY 199 (389)
T ss_pred -----------eCCHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhccc----c-cCCCCCeEEEEEecC-CeE
Confidence 67888888877776 99999999999999999999995544321 1 122357999999987 578
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
++..+.. .|+++.... ..+.+ ....+......+...++|.+.+.++++++||.|.+++||+++ ++|++|+||
T Consensus 200 ~~~~~~~-~G~v~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~-~~g~~~~iE 271 (389)
T PRK06849 200 CSYSIVR-SGELRAHSC----YKPEY--CAGSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIET-ENGDAYPIE 271 (389)
T ss_pred EEEEEEE-CCEEEEEEE----eeccc--cCCCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEEC-CCCCEEEEE
Confidence 7877764 377765422 11111 010100000111124689999999999999999999999998 478999999
Q ss_pred eccCCCCCcceeh
Q 000086 364 LNPRLQVEHPVTE 376 (2304)
Q Consensus 364 INpRlqgehpvtE 376 (2304)
+|||+++..+++.
T Consensus 272 iNpR~~~g~~l~~ 284 (389)
T PRK06849 272 CNPRTTSGLHLFD 284 (389)
T ss_pred ecCCCCceeEEcC
Confidence 9999999888775
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=273.76 Aligned_cols=200 Identities=16% Similarity=0.192 Sum_probs=162.7
Q ss_pred cccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000086 1917 IFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1992 (2304)
Q Consensus 1917 l~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~ 1992 (2304)
+|| +|+|+.++|+ +++|||+|||+|+||+|||++.+.. ..+++. ..+|+++|++++|++||
T Consensus 149 i~d--df~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~------------~ke~~~-rnfG~~~peGyRKAlR~ 213 (431)
T PLN03230 149 MTD--KWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRN------------TKENIY-RNFAMPQPNGYRKALRF 213 (431)
T ss_pred hhh--HHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcc------------cccccc-cCCCCCCHHHHHHHHHH
Confidence 677 5999999999 9999999999999999999976532 123333 33589999999999999
Q ss_pred HHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcC-CchhhhhcccccCCccceee
Q 000086 1993 LMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDSRINSDHIEMY 2071 (2304)
Q Consensus 1993 i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~-~GGa~vv~~~~i~~d~~~~~ 2071 (2304)
+++|++|++|||+|+||+||.+|..+|..|+.+++++.+.+++..+||+|++|+ |+. .|||+.+.. .|+ ++
T Consensus 214 mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVVi--GeGgSGGAlalg~----aD~--Vl 285 (431)
T PLN03230 214 MRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVI--GEGGSGGALAIGC----GNR--ML 285 (431)
T ss_pred HHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--CCCCcHHHHHhhc----CCE--EE
Confidence 999999999999999999999999999999999999999999999999999999 554 556665443 377 99
Q ss_pred cccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHh
Q 000086 2072 ADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKF 2151 (2304)
Q Consensus 2072 A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~f 2151 (2304)
|||+|.++|++|||++.|.|++.... ++.+
T Consensus 286 Mle~A~ysVisPEgaAsILwkd~~~A--------------------------~eAA------------------------ 315 (431)
T PLN03230 286 MMENAVYYVASPEACAAILWKSAAAA--------------------------PKAA------------------------ 315 (431)
T ss_pred EecCCEEEecCHHHHHHHHhccccch--------------------------HHHH------------------------
Confidence 99999999999999999999975110 0000
Q ss_pred hhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHHH
Q 000086 2152 AELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2152 ad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l~ 2189 (2304)
..+.-||..|++.|+||+||+.. .-...++.+|+..|.
T Consensus 316 ealkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~ 358 (431)
T PLN03230 316 EALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVIL 358 (431)
T ss_pred HHcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHH
Confidence 01234789999999999999843 334456667766653
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=268.38 Aligned_cols=210 Identities=17% Similarity=0.182 Sum_probs=169.3
Q ss_pred CCChHHHhhcccCCCCCcccccccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccc
Q 000086 1896 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1971 (2304)
Q Consensus 1896 ~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~ 1971 (2304)
....++.|.. +|| +|+|++.+|+ +++|||+|||+|+||+||+++++. +..|
T Consensus 72 Rp~~~d~i~~-----------l~d--~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~------------~~~e 126 (322)
T CHL00198 72 RPTTLDYIPY-----------ILD--EWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGR------------NTKE 126 (322)
T ss_pred CCCHHHHHHH-----------HhH--HHHHHccccccCCCCceEEEEEEECCEEEEEEEecCCc------------cchh
Confidence 3456777776 788 4999999997 999999999999999999997642 1233
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcC
Q 000086 1972 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2051 (2304)
Q Consensus 1972 ~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~ 2051 (2304)
++ ...+|.++|++++|++|++++|+++++|||+|+||+||.+|..+|..|+.+.+++.+.+++..+||+|++|+ |+.
T Consensus 127 ~~-~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVVi--Geg 203 (322)
T CHL00198 127 NV-LRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTII--GEG 203 (322)
T ss_pred hh-hhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEe--Ccc
Confidence 33 445788999999999999999999999999999999999999999999999999999999999999999999 555
Q ss_pred Cc-hhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHH
Q 000086 2052 RG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQ 2130 (2304)
Q Consensus 2052 ~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~ 2130 (2304)
+| ||| +++ .+|+ ++|||+|.++|++|||++.|.||+.+... +. + +
T Consensus 204 gsGGAl-al~---~aD~--V~m~e~a~~sVisPEg~a~Il~~d~~~a~--------------------------~a-A-~ 249 (322)
T CHL00198 204 GSGGAL-GIG---IGDS--IMMLEYAVYTVATPEACAAILWKDSKKSL--------------------------DA-A-E 249 (322)
T ss_pred cHHHHH-hhh---cCCe--EEEeCCeEEEecCHHHHHHHHhcchhhHH--------------------------HH-H-H
Confidence 44 454 444 2588 99999999999999999999999762210 00 0 0
Q ss_pred HHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc-----chHHHHHHHHHHHHH
Q 000086 2131 QQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2131 ~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~-----~tR~~~~~~L~r~l~ 2189 (2304)
.+.-||..|++.|+||+||+.. .....++.+|+..|.
T Consensus 250 ----------------------~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~ 291 (322)
T CHL00198 250 ----------------------ALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLI 291 (322)
T ss_pred ----------------------HcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHH
Confidence 1223789999999999999843 333456777776654
|
|
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=262.91 Aligned_cols=231 Identities=16% Similarity=0.215 Sum_probs=182.2
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|.|+++. |...|+..++..|+..||+++|++++++..+.||..+|++++++|||||+|..
T Consensus 54 ~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~--------------- 118 (296)
T PRK14569 54 ELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKF--------------- 118 (296)
T ss_pred ccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEE---------------
Confidence 34789999876 66678889999999999999999999999999999999999999999999764
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+... ....+.+|||+||||..|++|+|+.+|+|.+||.++++.+.. .++++||+|++| +|++|.+
T Consensus 119 --------~~~~---~~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~---~~~~lvEefI~G-~E~tv~v 183 (296)
T PRK14569 119 --------LTDK---LVAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK---YGEVMIEQWVTG-KEITVAI 183 (296)
T ss_pred --------Echh---hhhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh---cCCEEEEccccc-EEEEEEE
Confidence 1111 122467899999999999999999999999999999988753 247999999986 8999999
Q ss_pred EEcCCCCEEEeeccc--ccc-ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 288 LCDQYGNVAALHSRD--CSV-QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 288 l~D~~G~vi~l~~Rd--cSv-qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
+.++....+.+.... ... .....+.....|+. ++++..+++.+.|.++++++|++|.++|||++++ +|++||+|+
T Consensus 184 l~~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~g~~~vlEI 261 (296)
T PRK14569 184 VNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDD-RGNFYIMEI 261 (296)
T ss_pred ECCcCcceEEEecCCCcCChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-CCCEEEEEe
Confidence 976532222221111 000 01112333446765 6788889999999999999999999999999983 688999999
Q ss_pred ccCCCCC----cceehhhhcCCHHHHHHHHH
Q 000086 365 NPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 365 NpRlqge----hpvtE~vtGVDL~~~qL~iA 391 (2304)
|||++-. .|......|+|+.++..++.
T Consensus 262 N~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 262 NSSPGMTDNSLSPKSAAAEGVDFDSFVKRII 292 (296)
T ss_pred eCCCCCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 9999854 35555567898888776653
|
|
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=258.43 Aligned_cols=276 Identities=20% Similarity=0.302 Sum_probs=208.7
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000086 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2304)
Q Consensus 47 ~~~kILIan~G~---------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY 117 (2304)
|.+||.|+=+|. .+..+++++++.|+++. .+.. +.
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~---------~i~~--~~------------------------- 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAH---------PIDP--GE------------------------- 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEE---------EEec--Cc-------------------------
Confidence 445666665442 67889999999999974 1211 10
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCcc
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~ 196 (2304)
.+++..+..++|.|++.+ |...++..++..|+..|++++|++..++..+.||..++++++++|||+|+|..
T Consensus 47 ----~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~---- 118 (304)
T PRK01372 47 ----DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIV---- 118 (304)
T ss_pred ----chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE----
Confidence 123334556899999875 44567788899999999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000086 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2304)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEey 276 (2304)
+.+.+++..+++++|||+||||..|+||+|+.++++.+++.++++++.. .+.+++||+|
T Consensus 119 -------------------~~~~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~ 177 (304)
T PRK01372 119 -------------------LTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK--YDDEVLVEKY 177 (304)
T ss_pred -------------------EeCcchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh--cCCcEEEEcc
Confidence 5666777778889999999999999999999999999999999887742 2568999999
Q ss_pred ccccceeeEEEEEcCCCCEEEeeccc--ccccccc--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGNVAALHSRD--CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~vi~l~~Rd--cSvqrr~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
++| +|++|.++.+....++...... +...... -......|+ .++++..++|.+.+.++++++|+.|.+++||++
T Consensus 178 i~G-~E~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~ 255 (304)
T PRK01372 178 IKG-RELTVAVLGGKALPVIEIVPAGEFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFML 255 (304)
T ss_pred cCC-EEEEEEEECCCccceEEEEecCCEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 985 8999999987543333221110 0000000 011223354 378889999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
++ +|++||+|+|||++... +......|+|+.++...+
T Consensus 256 ~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~i 296 (304)
T PRK01372 256 DE-DGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRI 296 (304)
T ss_pred cC-CCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 94 58899999999986532 222334588877666554
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=265.10 Aligned_cols=231 Identities=21% Similarity=0.231 Sum_probs=184.6
Q ss_pred CCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 131 RVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 131 ~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
++|.|||. .|...|+..++..|+..|++++|++..++..+.||..++++++++|||+|||..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~----------------- 143 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVV----------------- 143 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-----------------
Confidence 68999998 578889999999999999999999999999999999999999999999999865
Q ss_pred cccccccCCH----HHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000086 210 VYRQACVYTT----EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 210 ~~~~~~V~s~----eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieV 285 (2304)
+.+. .......+.+|||+||||..|+||.||.+|++.+|+.++++++... +..++||+|++| +|++|
T Consensus 144 ------~~~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEefI~G-~E~~v 214 (333)
T PRK01966 144 ------LTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY--DRKVLVEQGIKG-REIEC 214 (333)
T ss_pred ------EeccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCcCC-EEEEE
Confidence 1111 1234456789999999999999999999999999999999987643 468999999986 99999
Q ss_pred EEEEcCCCCEEEeeccccc--cccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 286 QLLCDQYGNVAALHSRDCS--VQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 286 qvl~D~~G~vi~l~~RdcS--vqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
.++++ .+.+..+....+. +.....|. ....|+. +++++.+++.+.|.++++++|+.|.++|||++++ +|+
T Consensus 215 ~vl~~-~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g~ 291 (333)
T PRK01966 215 AVLGN-DPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTE-DGE 291 (333)
T ss_pred EEECC-CCeEcccEEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCC
Confidence 99987 3443322222221 11111222 1234664 8899999999999999999999999999999984 678
Q ss_pred EEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 359 YYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 359 ~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+||+|+|||++.. .|.....+|+|+.++.-++
T Consensus 292 ~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 292 IYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred EEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999854 2334456788888776554
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=256.57 Aligned_cols=238 Identities=20% Similarity=0.265 Sum_probs=180.1
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|+|||.. |...++..++..|+..|++++|+++.++..+.||..++++++++|||+|+|.. +..
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-------------~~~ 128 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIV-------------LTQ 128 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE-------------Eec
Confidence 5789999964 45567788899999999999999999999999999999999999999999875 000
Q ss_pred ccccccccCCHHHH--HHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 209 DVYRQACVYTTEEA--IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 209 ~~~~~~~V~s~eea--~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
...+.+++ ..+.+.++||+||||..|+||+||.+|+|.+++.++++.+... +.+++||+|++| +|++|.
T Consensus 129 ------~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i~G-~e~~v~ 199 (315)
T TIGR01205 129 ------NRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY--DEEVLVEQFIKG-RELEVS 199 (315)
T ss_pred ------ccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCCCC-EEEEEE
Confidence 01111222 2344679999999999999999999999999999999887643 468999999975 899999
Q ss_pred EEEcCCCCE-EEeeccccccccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 287 LLCDQYGNV-AALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 287 vl~D~~G~v-i~l~~RdcSvqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+++++.+.. +....+.+.+.....|. ....|+. ++++..++|++.+.++++++|+.|.++|||++++ +|++|
T Consensus 200 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~~~ 277 (315)
T TIGR01205 200 ILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLDE-EGEIY 277 (315)
T ss_pred EECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CCCEE
Confidence 998654322 22222211111111121 1124554 7889999999999999999999999999999994 56899
Q ss_pred EEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
|+|+|||++... |..-...|+|+.++...+.
T Consensus 278 viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ii 312 (315)
T TIGR01205 278 LNEINTIPGMTAISLFPKAAAAAGIEFSQLVERIL 312 (315)
T ss_pred EEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHHHH
Confidence 999999986542 2233456888887776553
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=259.71 Aligned_cols=230 Identities=21% Similarity=0.242 Sum_probs=180.2
Q ss_pred cCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.|+|. +|...|+..++..|+..|++++|+++.+...+.||..++++++++|||+|+|..
T Consensus 89 ~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~---------------- 152 (343)
T PRK14568 89 IRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWT---------------- 152 (343)
T ss_pred ccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE----------------
Confidence 578999997 677889999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+.+.++. ..+.++||+||||..||||+||.+|+|.+||.++++.+... +..++||+|++| +|+++.++
T Consensus 153 -------~~~~~~~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~sv~vl 220 (343)
T PRK14568 153 -------VTADERP--DAATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY--DSKVLIEEAVVG-SEVGCAVL 220 (343)
T ss_pred -------EECCchh--hhhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEECCcCC-EEEEEEEE
Confidence 2222221 13468999999999999999999999999999999887643 468999999986 89999999
Q ss_pred EcCCCCEEEeecccc---ccccccceEE---------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 289 CDQYGNVAALHSRDC---SVQRRHQKII---------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 289 ~D~~G~vi~l~~Rdc---Svqrr~qKii---------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
+++.+..+.-..+-+ .+.+.++|.. ...|+. ++++..+++.+.|.++++++|+.|.++|||++++ +
T Consensus 221 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 221 GNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred cCCCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 875432221111100 1223333321 124665 7899999999999999999999999999999984 7
Q ss_pred CcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHH
Q 000086 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~ 389 (2304)
|.+||+|||++++... |..-.+.|+++.++.-+
T Consensus 299 g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 299 GTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred CCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 8899999999998642 22223467776665544
|
|
| >PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-25 Score=228.71 Aligned_cols=107 Identities=31% Similarity=0.531 Sum_probs=102.9
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+||||||||.++|.|++|+|..+.+|++++||++.++.+|..|+++|||++||||+||.||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G- 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG- 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES-
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2304)
++||++||++||++|+|++|+++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccCCCeeeccC
Confidence 9999999999999999999999999997
|
It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A .... |
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=256.03 Aligned_cols=238 Identities=19% Similarity=0.246 Sum_probs=183.0
Q ss_pred cCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.++++ .|...|+..++..|+..|++++|++..++..+.||..++++++++|||+|+|.. ++.
T Consensus 87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~-------------~~~ 153 (347)
T PRK14572 87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFE-------------LEK 153 (347)
T ss_pred cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-------------EEc
Confidence 467888887 367779999999999999999999999999999999999999999999999865 000
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
.....+.++..+..+++|||+||||..||+|+||.+|+|.+||..+++.+... +.+++||+|++| +|++|.++
T Consensus 154 ----~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~--~~~vlVEefI~G-~E~sv~vi 226 (347)
T PRK14572 154 ----LKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES--DSKVMSQSFLSG-TEVSCGVL 226 (347)
T ss_pred ----cccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEEcCccc-EEEEEEEE
Confidence 00022444555556779999999999999999999999999999999987632 468999999976 99999999
Q ss_pred EcCC-C--CEEEeecccccc-------cccc--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 289 CDQY-G--NVAALHSRDCSV-------QRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 289 ~D~~-G--~vi~l~~RdcSv-------qrr~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
.+.. | +.+.+....... ..++ .......|+. +++++.+++.+.|.++++++|+.|.++|||+++ +
T Consensus 227 ~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~--~ 303 (347)
T PRK14572 227 ERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV--D 303 (347)
T ss_pred eCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE--C
Confidence 7532 2 333333222110 0001 0112335765 789999999999999999999999999999998 6
Q ss_pred CcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
|++||+|+|++++... |..-...|+++.++.-++
T Consensus 304 ~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 304 GEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred CcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999997542 333335688777665543
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-24 Score=270.58 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=136.7
Q ss_pred ccccCCCceecccCCC----CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1916 GIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1916 gl~D~gsF~E~~~~~a----~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
.+|| +|+|+.++|+ +++|||+|||+|+||+|||++++.. ..++ +.+.+|+++|.+++|++|
T Consensus 169 ~i~d--df~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~------------tke~-~~rnfG~~~peGyRKAlR 233 (762)
T PLN03229 169 NITD--KFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRN------------TKEN-IMRNFGMPTPHGYRKALR 233 (762)
T ss_pred HHHH--HHHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCcc------------cccc-ccccCCCCCHHHHHHHHH
Confidence 3665 5999999987 8999999999999999999976421 2233 344578999999999999
Q ss_pred HHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCC-chhhhhcccccCCcccee
Q 000086 1992 ALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR-GGAWVVVDSRINSDHIEM 2070 (2304)
Q Consensus 1992 ~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~-GGa~vv~~~~i~~d~~~~ 2070 (2304)
++++|++|++|||+|+||+||.+|...|..|+.+++++.+.+++..+||+|++|+ |+++ ||||++.. +|+ +
T Consensus 234 lmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVVi--GeggSGGAlA~g~----aD~--V 305 (762)
T PLN03229 234 MMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVI--GEGGSGGALAIGC----ANK--L 305 (762)
T ss_pred HHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhhc----CCE--E
Confidence 9999999999999999999999999999999999999999999999999999999 5554 56665544 477 9
Q ss_pred ecccCcEEEeeCccchhhhhcchh
Q 000086 2071 YADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2071 ~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
+|||+|.++|++|||++.|.||+.
T Consensus 306 lMle~A~~sVisPEgaAsILwkd~ 329 (762)
T PLN03229 306 LMLENAVFYVASPEACAAILWKSA 329 (762)
T ss_pred EEecCCeEEecCHHHHHHHHhcCc
Confidence 999999999999999999999976
|
|
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=256.07 Aligned_cols=240 Identities=17% Similarity=0.214 Sum_probs=185.0
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.|+|.. |...|+..++..|+..||+++|++..+...+.||..++++++++|||||||.. +.
T Consensus 86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~----~~---------- 151 (364)
T PRK14570 86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIG----FR---------- 151 (364)
T ss_pred cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEE----Ee----------
Confidence 4689999874 66779999999999999999999999999999999999999999999999865 00
Q ss_pred ccccccccCCHHHHHHH-hhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 209 DVYRQACVYTTEEAIAS-CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~-a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
......+.+++.+. .+.+|||+||||..+|+|.||.+|++.+||.++++.+... +..++||+|++| +|++|.+
T Consensus 152 ---~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~--~~~vlVEefI~G-rEi~v~V 225 (364)
T PRK14570 152 ---KYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY--DLTVVIEKFIEA-REIECSV 225 (364)
T ss_pred ---ccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEECCcCC-EEEEEEE
Confidence 00012244555443 4679999999999999999999999999999999988743 467999999985 9999999
Q ss_pred EEcCCCCEEEeeccc-----c-cccc-----ccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 288 LCDQYGNVAALHSRD-----C-SVQR-----RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 288 l~D~~G~vi~l~~Rd-----c-Svqr-----r~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
+++....+....+.. + +... ..+......|+. +++++.+++++.|.++.++||++|.++|||++++++
T Consensus 226 lg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~ 304 (364)
T PRK14570 226 IGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDT 304 (364)
T ss_pred ECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCC
Confidence 987643333322211 0 0000 011223346776 899999999999999999999999999999998545
Q ss_pred CcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
|++||+|+||+++-.. |..-...|+++.++.-++
T Consensus 305 g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 342 (364)
T PRK14570 305 GLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNL 342 (364)
T ss_pred CcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999998542 323334688777665443
|
|
| >smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=224.23 Aligned_cols=107 Identities=32% Similarity=0.610 Sum_probs=105.3
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
+||||||||.++|.|++|+|+.+++|++++||++.++..|..|+++||||+||||+||+||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G- 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG- 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2304)
++||++||++||.+|+|++|+++|+|||
T Consensus 80 v~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcCcccccccC
Confidence 9999999999999999999999999996
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=244.45 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=157.0
Q ss_pred ccccC----CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------------------CCCCeEEEEE
Q 000086 1890 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTGR 1938 (2304)
Q Consensus 1890 ~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------------------~~a~~vVtG~ 1938 (2304)
.++|. ....+|++|+. |+|+|||.|+.. +.+.+||||+
T Consensus 47 ~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~ 115 (292)
T PRK05654 47 NVCPKCGHHMRISARERLDL-----------LLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGK 115 (292)
T ss_pred CCCCCCCCCeeCCHHHHHHH-----------HccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEE
Confidence 35665 55688899987 899999999854 1257999999
Q ss_pred EEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhh
Q 000086 1939 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 2018 (2304)
Q Consensus 1939 arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~ 2018 (2304)
|+|+|+||+|+|+|++++ ||+++..+++|++|++++|+++++|||+|+|++|+ .
T Consensus 116 g~I~G~~V~v~a~D~~f~---------------------gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGa-----r 169 (292)
T PRK05654 116 GTIEGMPVVLAVMDFSFM---------------------GGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGA-----R 169 (292)
T ss_pred EEECCEEEEEEEEecccc---------------------cCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCc-----c
Confidence 999999999999988766 99999999999999999999999999999999996 4
Q ss_pred hhhhHHH--HHHHH---HHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcch
Q 000086 2019 LFEGILQ--AGSTI---VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2093 (2304)
Q Consensus 2019 e~~gilk--~ga~i---v~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~ 2093 (2304)
|++|++. .++++ +..++++++|+|++|+ |.++||+...+. ...|+ ++|||+|++|+++|+.+..
T Consensus 170 mqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprvie~----- 238 (292)
T PRK05654 170 MQEGLLSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFA--MLGDI--IIAEPKALIGFAGPRVIEQ----- 238 (292)
T ss_pred hhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCCchHHHHHHH--HcCCE--EEEecCcEEEecCHHHHHh-----
Confidence 6777764 44554 4457778899999999 677888554443 35688 9999999999999954411
Q ss_pred hhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCc
Q 000086 2094 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2173 (2304)
Q Consensus 2094 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~ 2173 (2304)
++ .+++ .+.+.+|..+.++|+||.||+|
T Consensus 239 -----~~-----------------------------~e~l------------------pe~~~~ae~~~~~G~vD~Vv~~ 266 (292)
T PRK05654 239 -----TV-----------------------------REKL------------------PEGFQRAEFLLEHGAIDMIVHR 266 (292)
T ss_pred -----hh-----------------------------hhhh------------------hhhhcCHHHHHhCCCCcEEECH
Confidence 00 0000 0113467788899999999999
Q ss_pred cchHHHHHHHHHH
Q 000086 2174 DKSRSFFCRRLRR 2186 (2304)
Q Consensus 2174 ~~tR~~~~~~L~r 2186 (2304)
+++|..|...|+.
T Consensus 267 ~e~r~~l~~~L~~ 279 (292)
T PRK05654 267 RELRDTLASLLAL 279 (292)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=256.25 Aligned_cols=326 Identities=18% Similarity=0.282 Sum_probs=268.2
Q ss_pred ccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000086 48 IHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2304)
Q Consensus 48 ~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~s 116 (2304)
.+-++++|.|. -|+.++|++|++|++|+..+.+-++| .| | ..+||+.|.-.
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETV--ST--D-------yDecdrLYFee------- 979 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETV--ST--D-------YDECDRLYFEE------- 979 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccc--cC--c-------hHHHhhHhHhh-------
Confidence 35689999886 69999999999999998544444444 22 2 45788866531
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCC-cCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGWG-HASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~G-~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.++++-+.+...+|+...| .+..| ++-.|.+.|....|.+|+.+....|+..+.+++.+.||..|+|..
T Consensus 980 -is~E~vmDiYe~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wke--- 1053 (1435)
T KOG0370|consen 980 -ISYERVMDIYELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKE--- 1053 (1435)
T ss_pred -hhhhhhhhhhhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhh---
Confidence 34699999999999988887665 45555 666788899999999999999999999999999999999999997
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+++.+|+.++|+++||||+|.|+.--.|.-|-++.+++||+..++++..-++..|+.|-+
T Consensus 1054 --------------------lt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisK 1113 (1435)
T KOG0370|consen 1054 --------------------LTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISK 1113 (1435)
T ss_pred --------------------hccHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHH
Confidence 789999999999999999999999999999999999999999999999888999999999
Q ss_pred eccccceeeEEEEEcCCCCEEEeecccccccc--ccc-eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQR--RHQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqr--r~q-KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|+++++|++|+.++.. |+++....-+ .+.. -|. ...-..|+..++++..+++.+++.++++++...|+++++|+.
T Consensus 1114 fie~AkEidvDAVa~~-G~~~~haiSE-HvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~ 1191 (1435)
T KOG0370|consen 1114 FIEGAKEIDVDAVASD-GKVLVHAISE-HVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIA 1191 (1435)
T ss_pred hhcccceechhhhccC-CeEEEEehhh-hhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEe
Confidence 9999999999988753 6665431111 0000 000 000123788899999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch--------------hhhhcccccCCCcccccc
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP--------------EIRRFYGMEHGGVYDAWR 418 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip--------------dir~~yg~~~~~~~~~~~ 418 (2304)
. +++..+||+|-|.+.+.|+...+.|+|+++...+..||.|++..+ .+.++.|.||. ++.+|.
T Consensus 1192 k--~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV~vKvPqFSf~RLagADp~-LgvEMa 1268 (1435)
T KOG0370|consen 1192 K--DNELKVIECNVRASRSFPFVSKTLGVDFIALATRAIMGVPVPPDLLLHPDYVAVKVPQFSFSRLAGADPV-LGVEMA 1268 (1435)
T ss_pred c--CCeEEEEEeeeeeeccccceehhcCchHHHHHHHHHhCCCCCCccccCCCeEEEEccccccccccCCCce-eeeEec
Confidence 8 789999999999999999999999999999999999999876432 25566666665 356666
Q ss_pred cccc
Q 000086 419 KTSV 422 (2304)
Q Consensus 419 ~~~~ 422 (2304)
+||+
T Consensus 1269 STGE 1272 (1435)
T KOG0370|consen 1269 STGE 1272 (1435)
T ss_pred cccc
Confidence 6664
|
|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=235.62 Aligned_cols=223 Identities=20% Similarity=0.241 Sum_probs=171.7
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.||+.. |...|+..++..|+..|++++|+++.++..+.||..++++++ +|||+|+|..
T Consensus 52 ~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~---------------- 114 (299)
T PRK14571 52 KSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVE---------------- 114 (299)
T ss_pred cCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEE----------------
Confidence 4679999874 445578889999999999999999999999999999999998 5899999765
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+.+.. .+..+|||+||||..|+||+||.+|+|.+||.+++++.... ..+++||+|++| +|++|.++
T Consensus 115 -------~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~vlVEeyI~G-~E~sv~vl 180 (299)
T PRK14571 115 -------IKEFM----KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR--YGSVIVQEYIPG-REMTVSIL 180 (299)
T ss_pred -------Eechh----hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh--CCcEEEEccccc-eEEEEEEE
Confidence 22211 23568999999999999999999999999999998876532 357999999986 89999999
Q ss_pred EcCCCC-EEEeecccccccccc----ceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 289 CDQYGN-VAALHSRDCSVQRRH----QKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 289 ~D~~G~-vi~l~~RdcSvqrr~----qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
+++.+. ++.+... ....++ .|. ....|+. ++++..++|.+.+.++++++|+.|.++|||+++ +|+
T Consensus 181 ~~~~~~~vl~~~e~--~~~~~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~--~~~ 255 (299)
T PRK14571 181 ETEKGFEVLPILEL--RPKRRFYDYVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFS--DGR 255 (299)
T ss_pred cCCCCeeeeceEEE--ecCCCccccccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE--CCc
Confidence 986433 2222111 011100 011 1123654 788999999999999999999999999999998 688
Q ss_pred EEEEEeccCCCCCc----ceehhhhcCCHHHHHH
Q 000086 359 YYFLELNPRLQVEH----PVTEWIAEINLPAAQV 388 (2304)
Q Consensus 359 ~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL 388 (2304)
+||+|+||+++... |..-...|+++.++.-
T Consensus 256 ~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~ 289 (299)
T PRK14571 256 FYFLEINTVPGLTELSDLPASAKAGGIEFEELVD 289 (299)
T ss_pred EEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHH
Confidence 99999999998642 2122246777776443
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=264.82 Aligned_cols=240 Identities=19% Similarity=0.249 Sum_probs=186.3
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.|+|.. |...|+..++..|+..||+++|++..+...+.||..+|++++++|||+|||.. +..
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~-------------~~~ 591 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQP-------------LTL 591 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------------Eec
Confidence 4689999975 66789999999999999999999999999999999999999999999999875 000
Q ss_pred ccccccccCCHH-HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 209 DVYRQACVYTTE-EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 209 ~~~~~~~V~s~e-ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
.-+ ..+.+ ...+..+++|||+||||..+|+|+||.+|++.+||.++++.+... +.+++||+|+.+++|++|.+
T Consensus 592 ~~~----~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~i~~grEi~v~v 665 (809)
T PRK14573 592 AGW----KREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY--DTDVFVEESRLGSREIEVSC 665 (809)
T ss_pred hhc----ccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeccCCCEEEEEEE
Confidence 000 01222 234566789999999999999999999999999999999988643 46899999998889999999
Q ss_pred EEcCCCCEEE--eeccccc--cccccceE-------EE-eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 288 LCDQYGNVAA--LHSRDCS--VQRRHQKI-------IE-EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 288 l~D~~G~vi~--l~~RdcS--vqrr~qKi-------ie-eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
++++.+..+. ...+.+. +.....|. .+ ..|+. +++++.+++++.|.++.+++|++|.++|||++++
T Consensus 666 l~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~- 743 (809)
T PRK14573 666 LGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRIDFFLDE- 743 (809)
T ss_pred EeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-
Confidence 9987664322 1122221 11111111 12 23554 8999999999999999999999999999999984
Q ss_pred CCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++-.. |..-...|+++.++.-++
T Consensus 744 ~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 744 EGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 68899999999998642 333345688777665544
|
|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=224.84 Aligned_cols=345 Identities=20% Similarity=0.205 Sum_probs=235.8
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC---CccCHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN---NYANVQLIV 124 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~---sY~dvd~Ii 124 (2304)
+-|||++ |..-..+..||.++||+|+ .|..+.+.|.. -.|+.++..-.+..-. +| |...|+
T Consensus 11 ~~kiLvi--GvntR~vveSA~klGf~V~-------sv~~y~~~Dl~------~~a~~~l~~r~~~~~~rfe~~-de~~li 74 (389)
T COG2232 11 SCKILVI--GVNTRPVVESASKLGFEVY-------SVQYYDPADLP------GDAISYLRERPGELLGRFENL-DEQKLI 74 (389)
T ss_pred cceEEEE--eecchHhHHHHHhcCeEEE-------EeEeecccccc------cccceEEEecChhhcCcccCC-CHHHHH
Confidence 4579998 5667788999999999996 34446655544 2455555433222112 33 678899
Q ss_pred HHHHHc--CCCE-EEeCCCcCCCCCchHHHHHHCCCeEECCCHH-HHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCC
Q 000086 125 EMAEMT--RVDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPAT-SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPE 200 (2304)
Q Consensus 125 ~iA~~~--~vDa-V~pG~G~~SEn~~la~~l~~~GI~fiGPs~e-am~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~ 200 (2304)
+++.+. .+|+ ++|+.|+...+.. -+.+....|.+++ ....+.+|..+...+..+|.|.|+...
T Consensus 75 ~~~~~~~~dvD~~ii~~sg~e~l~~~-----g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~-------- 141 (389)
T COG2232 75 EAAEDLAEDVDAPIIPFSGFEALRTS-----GELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKK-------- 141 (389)
T ss_pred HHHHhhhhhcceeeeecccccccccc-----CccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhh--------
Confidence 988875 4888 8888787665422 2235567788888 889999999999999999999998432
Q ss_pred CcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000086 201 SCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2304)
Q Consensus 201 ~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~ 280 (2304)
.+ ....--+|+|+||+.|+||. +.++.=.++.. -.++++|+|++|
T Consensus 142 ------------------~e----~~~~gekt~IlKPv~GaGG~-~el~~~~Ee~~-----------~~~~i~Qefi~G- 186 (389)
T COG2232 142 ------------------IE----PLEEGEKTLILKPVSGAGGL-VELVKFDEEDP-----------PPGFIFQEFIEG- 186 (389)
T ss_pred ------------------hh----hhhhcceeeEEeeccCCCce-eeecccccccC-----------CcceehhhhcCC-
Confidence 11 11122368999999999996 33333222211 258999999987
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEe---------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEE---------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYL 351 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiiee---------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl 351 (2304)
++++|.+++++. .++.+. |+-|--.-+-.+. .|.+ .+..+++++.|..+...+|+.|...|||+
T Consensus 187 ~p~Svs~is~g~-~a~~la---~N~QiI~~~~~~~~~f~Y~GNlTP~~---~~~~ee~e~la~elV~~lgL~GsnGVDfv 259 (389)
T COG2232 187 RPVSVSFISNGS-DALTLA---VNDQIIDGLRGEYSQFVYKGNLTPFP---YEEVEEAERLAEELVEELGLVGSNGVDFV 259 (389)
T ss_pred ceeEEEEEecCc-ceEEEE---EeeeeecccccccccceeccCcCCCc---chhhHHHHHHHHHHHHHhccccccccceE
Confidence 899999999975 333332 1111110000111 2433 23338999999999999999999999999
Q ss_pred EEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccc
Q 000086 352 YSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQ 431 (2304)
Q Consensus 352 ~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~ 431 (2304)
++ +.++|+||+|||+||+..+.|+++|+|++++++++.+|.-.
T Consensus 260 l~--d~gpyViEVNPR~qGt~e~iE~s~giNl~~lHi~af~G~Lp----------------------------------- 302 (389)
T COG2232 260 LN--DKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAFDGELP----------------------------------- 302 (389)
T ss_pred ee--cCCcEEEEecCcccchHHHHHHhcCCCHHHHHHHHhcCcCc-----------------------------------
Confidence 98 78899999999999999999999999999999999999743
Q ss_pred cCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHH
Q 000086 432 AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMV 511 (2304)
Q Consensus 432 ~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~ 511 (2304)
+++.|+++++...++|.+ .-+.| .....|.+---.+|..+ +--+| +..|||.+.++++|..-+.
T Consensus 303 -Er~kpr~~a~krILyap~--~v~v~-----------~l~~~~~~DiP~~Gtvi-ekgeP-l~sviA~~nt~~~a~~~~e 366 (389)
T COG2232 303 -ERPKPRGYACKRILYAPR--TVRVP-----------ILKLSWTHDIPRPGTVI-EKGEP-LCSVIASSNTRSGAESMAE 366 (389)
T ss_pred -CCCCcceeEEeEEEeccc--eeecc-----------cccccccccCCCCCccc-CCCCc-eeeeeeccCCHHHHHHHHH
Confidence 245667888887777733 21111 11122222111222222 22222 7889999999999999777
Q ss_pred Hhhcc
Q 000086 512 LGLKE 516 (2304)
Q Consensus 512 ~AL~e 516 (2304)
+.++.
T Consensus 367 r~~er 371 (389)
T COG2232 367 RLAER 371 (389)
T ss_pred HHHHH
Confidence 76654
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-22 Score=235.37 Aligned_cols=200 Identities=20% Similarity=0.228 Sum_probs=156.7
Q ss_pred CccccC----CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------------------CCCCeEEEE
Q 000086 1889 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTG 1937 (2304)
Q Consensus 1889 ~~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------------------~~a~~vVtG 1937 (2304)
..++|. ..-.+|++|+. |||+|||.|+.. +.+.++|||
T Consensus 45 ~~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG 113 (285)
T TIGR00515 45 LEVCPKCDHHMRMDARERIES-----------LLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTG 113 (285)
T ss_pred CCCCCCCCCcCcCCHHHHHHH-----------ceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEE
Confidence 345665 56789999997 899999999842 125799999
Q ss_pred EEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchh
Q 000086 1938 RARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQR 2017 (2304)
Q Consensus 1938 ~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~ 2017 (2304)
+|+|+|+||+|+|+|++++ ||+++..+++|++|+++.|.++++|||+|+|++|+. .
T Consensus 114 ~g~I~G~~V~v~a~D~~f~---------------------gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaR---m 169 (285)
T TIGR00515 114 KGTLYGMPIVVAVFDFAFM---------------------GGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGAR---M 169 (285)
T ss_pred EEEECCEEEEEEEEecccc---------------------CCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc---c
Confidence 9999999999999998876 999999999999999999999999999999999973 2
Q ss_pred hhhhhHHHHHHH---HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchh
Q 000086 2018 DLFEGILQAGST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2018 ~e~~gilk~ga~---iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
.|....+..+++ .+..+++.++|+|++++ |.++||+...+. ..+|+ ++|||+|++|+++|+-+ +
T Consensus 170 qEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprVi-e------ 236 (285)
T TIGR00515 170 QEALLSLMQMAKTSAALAKMSERGLPYISVLT--DPTTGGVSASFA--MLGDL--NIAEPKALIGFAGPRVI-E------ 236 (285)
T ss_pred ccchhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCcchHHHHHHH--hCCCE--EEEECCeEEEcCCHHHH-H------
Confidence 333334445666 44557778899999999 677887654442 24688 99999999999999631 0
Q ss_pred hHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc
Q 000086 2095 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD 2174 (2304)
Q Consensus 2095 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~ 2174 (2304)
.++ .+++ .+.+++|..+.++|.||.||+++
T Consensus 237 ---~ti-----------------------------~e~l------------------pe~~q~ae~~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 237 ---QTV-----------------------------REKL------------------PEGFQTSEFLLEHGAIDMIVHRP 266 (285)
T ss_pred ---HHh-----------------------------cCcc------------------chhcCCHHHHHhCCCCcEEECcH
Confidence 000 0000 12245788899999999999999
Q ss_pred chHHHHHHHHHH
Q 000086 2175 KSRSFFCRRLRR 2186 (2304)
Q Consensus 2175 ~tR~~~~~~L~r 2186 (2304)
++|..++..|+.
T Consensus 267 ~~r~~l~~~L~~ 278 (285)
T TIGR00515 267 EMKKTLASLLAK 278 (285)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=221.19 Aligned_cols=352 Identities=18% Similarity=0.214 Sum_probs=250.8
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~ 194 (2304)
.|.+++.++|+++++..|++| .|.|. +...|.+.||.++||+.+++.+.++|..+|.+|.++||||..|..
T Consensus 55 ~d~~ala~f~~e~~I~lVvvG----PE~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~-- 128 (788)
T KOG0237|consen 55 ADFEALASFCKEHNINLVVVG----PELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKT-- 128 (788)
T ss_pred hhHHHHHHHHHHcceeEEEEC----CchhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeee--
Confidence 478999999999999999999 33332 236777889999999999999999999999999999999999876
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCC
Q 000086 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGS 269 (2304)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~ 269 (2304)
+++.+++..+.+..+ .++|||+..-..||||.+..+.+|.-++.+.+... ..|.
T Consensus 129 ---------------------ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~ 187 (788)
T KOG0237|consen 129 ---------------------FTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGK 187 (788)
T ss_pred ---------------------eCCHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccc
Confidence 788899999999999 46999999999999999999999998888877532 2367
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEe------------CCCCCCCHHHHHHHHHHH-HHH
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEE------------GPITVAPLETVKKLEQAA-RRL 336 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiiee------------aPa~~l~~e~~~~m~e~A-~rl 336 (2304)
.++|||+++| .|+++-.|.|++ ++..+. ....|.++.+. +|+|.+++++.+.+.+.. .+.
T Consensus 188 tvViEE~LEG-eEvS~laftDG~-s~~~mp-----~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~T 260 (788)
T KOG0237|consen 188 TVVIEELLEG-EEVSFLAFTDGY-SVRPLP-----PAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPT 260 (788)
T ss_pred eEehhhhcCc-ceEEEEEEecCc-ccccCC-----cccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHh
Confidence 8999999987 799999999986 333331 22345555542 588888888776654433 233
Q ss_pred HH-----HCCceeeeEEEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccC
Q 000086 337 AK-----CVNYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEH 410 (2304)
Q Consensus 337 ak-----alGy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~ 410 (2304)
.+ .+.|+|+...-++++ .++|.+||.|.|++- |..+.-....-||.+.++...-|. |.
T Consensus 261 v~Gm~~eg~~y~GVLfaGlMl~--k~~P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~~~~~-L~------------- 324 (788)
T KOG0237|consen 261 VDGMAEEGIPYVGVLFAGLMLT--KDGPKVLEFNVRFGDPETQVLLPLLESDLAEVILACCNGR-LD------------- 324 (788)
T ss_pred hhHHHhcCCceeeEEeeeeEEe--cCCccEEEEecccCCchhhhhHHHHHhHHHHHHHHHhhCC-cc-------------
Confidence 32 457789999999999 567999999999973 333333334459999988877775 22
Q ss_pred CCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEE---EeeeeCCcccc
Q 000086 411 GGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAY---FSVKSGGGIHE 487 (2304)
Q Consensus 411 ~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~---~~v~~G~~i~~ 487 (2304)
...|.|+ .....+.++++--|++...+|- .|+.+..+..++.++. .++.++. --
T Consensus 325 -----------~~~i~w~-----~~sa~~VV~as~gYP~sy~KG~-----~It~~~~~~~~~~rVFHAGTs~~ss~--vv 381 (788)
T KOG0237|consen 325 -----------TVDIVWS-----KKSAVTVVMASGGYPGSYTKGS-----IITGLPEADRPGTRVFHAGTSLDSSN--VV 381 (788)
T ss_pred -----------ccCcccc-----ccceEEEEEecCCCCCCCcCCc-----ccccCcccCCCcceEEeccccccccc--eE
Confidence 1233342 1223345555555555544431 2222222223333332 1122221 11
Q ss_pred cCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchh
Q 000086 488 FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGW 548 (2304)
Q Consensus 488 ~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ 548 (2304)
...+++--|.+.+++-++|++.++.+++.+++.| .|.|+-+...+|..-..+|.-
T Consensus 382 TNGGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg------~~yRkDI~~ra~~~~~~st~s 436 (788)
T KOG0237|consen 382 TNGGRVLSVTATGDDLESAAETAYKAVQVISFSG------KFYRKDIAWRAFKNKDDSTPS 436 (788)
T ss_pred ecCceEEEEEecCchHHHHHHHHHHHheEEeecc------ccccchhhhhhcchhhcCCcc
Confidence 1234466689999999999999999999999999 456666666677765555543
|
|
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-21 Score=212.54 Aligned_cols=178 Identities=23% Similarity=0.351 Sum_probs=131.1
Q ss_pred HhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEE
Q 000086 169 ALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK 248 (2304)
Q Consensus 169 ~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~ 248 (2304)
++.||..++++++++|||+|++.. +.+.+++.+++..++||+||||..|+||+|+++
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~-----------------------~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~ 57 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRI-----------------------VDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFI 57 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEE-----------------------ECSHHHHHHHHHHSSSSEEEEESS-STTTT-EE
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEcCccccCCCEEE
Confidence 478999999999999999999765 788999999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEEEEEcCCCCEEEeecccccccccc--ceEEEeCCCCCCCHH
Q 000086 249 VHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH--QKIIEEGPITVAPLE 324 (2304)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~--qKiieeaPa~~l~~e 324 (2304)
+++.+++..+++.+..... +.++++|+|++| .++++.++.+ .|.++.+...+...+... ..-...+.....+..
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (184)
T PF13535_consen 58 VHSPEELEAALAEIREDSPLGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPP 135 (184)
T ss_dssp ESSHHHHHHHHHHHHHHHS-HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CE
T ss_pred eCCHHHHHHHHHHHHHhcccCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecccccc
Confidence 9999999999999876654 578999999986 8999999988 688766543332221010 000111111112334
Q ss_pred HHHHHHHHHHHHHHHCCc-eeeeEEEEEEEccCCcEEEEEeccCCCCCc
Q 000086 325 TVKKLEQAARRLAKCVNY-VGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2304)
Q Consensus 325 ~~~~m~e~A~rlakalGy-~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2304)
..+++.+.+.++++++|| .|.+++||++++ +|.+||+|+|||++|.+
T Consensus 136 ~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~-~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 136 LPEELRDLARKLLRALGYRNGFFHIDFIVDP-DGELYFIEINPRFGGGS 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHT--SEEEEEEEEEET-CCEEEEEEEESS--STT
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEEEEEEeC-CCCEEEEEECccCCCCC
Confidence 458999999999999999 899999999995 47899999999999875
|
|
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=217.98 Aligned_cols=226 Identities=15% Similarity=0.200 Sum_probs=167.0
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
.+|+|++...+......+++.++..|+++++ +++++..+.||..++++++++|||+|++..
T Consensus 48 ~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~------------------ 108 (277)
T TIGR00768 48 ELDVVIVRIVSMFRGLAVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTGL------------------ 108 (277)
T ss_pred CCCEEEEechhHhhHHHHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEEE------------------
Confidence 4688877652222334577888889999885 589999999999999999999999999765
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC-CCCcEEEEEeccccceeeEEEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV-PGSPIFIMKVASQSRHLEVQLLC 289 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~-~~~~i~VEeyI~g~reieVqvl~ 289 (2304)
+.+.+++.++.++++||+|+||..|+||+|+.++++.+++..+++...... ...++++|+|+++....++.++.
T Consensus 109 -----~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v 183 (277)
T TIGR00768 109 -----AGSPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFV 183 (277)
T ss_pred -----eCCHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEE
Confidence 567888888889999999999999999999999999999998887665432 12579999999864324444444
Q ss_pred cCCCCEEEeeccc--cccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 290 DQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 290 D~~G~vi~l~~Rd--cSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
.+ |+++....|. .........-....|.. + .+++.+.|.++++++|+ |.+.|||++++ +|++||+|+|||
T Consensus 184 ~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~~-l----~~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~ 255 (277)
T TIGR00768 184 VG-DEVIAAIYRITSGHWRTNLARGGKAEPCP-L----TEEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPN 255 (277)
T ss_pred EC-CEEEEEEEEcCCCchhhhhhcCCeeeecC-C----CHHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCC
Confidence 32 4555544332 00000000000011222 2 24788899999999998 78899999984 678999999999
Q ss_pred CCCCcceehhhhcCCHHHHHHHH
Q 000086 368 LQVEHPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 368 lqgehpvtE~vtGVDL~~~qL~i 390 (2304)
++.. ..+..+|+|+++++++.
T Consensus 256 p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 256 PEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred cchh--hhHHHHCCCHHHHHHhh
Confidence 8743 45678999999998764
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-21 Score=243.59 Aligned_cols=306 Identities=21% Similarity=0.322 Sum_probs=261.3
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
.-+|+||+|.|. .+-+.|+++|+-|+.|+..+.+|-+| .| -..+||+.+.+|-
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtv--Qt---------s~~lAD~vyflpv----- 439 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATV--QT---------SKGLADKVYFLPV----- 439 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCccccc--cc---------ccccceEEEEeec-----
Confidence 357999999764 47789999999999998666666544 33 1238999999984
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCC-CCC--chHH--HHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCC
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHAS-EIP--ELPD--TLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~S-En~--~la~--~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~ 190 (2304)
..+.+....+...+|++..++|... -|. ++-+ .+++.+....|.+.+++....|+..+...+++.+.++.|.
T Consensus 440 ---T~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s 516 (1435)
T KOG0370|consen 440 ---TPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPS 516 (1435)
T ss_pred ---CHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccch
Confidence 3566788889999999999987433 221 1223 4566789999999999999999999999999999999986
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCc
Q 000086 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSP 270 (2304)
Q Consensus 191 s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~ 270 (2304)
.. +++.++++++++++|||||+.+...-||.|--.++|++||.+...++.+. ...
T Consensus 517 ~a-----------------------~~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~--s~Q 571 (1435)
T KOG0370|consen 517 EA-----------------------VSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL--SPQ 571 (1435)
T ss_pred hh-----------------------HhHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc--Cce
Confidence 54 78999999999999999999999999999999999999999988887654 468
Q ss_pred EEEEEeccccceeeEEEEEcCCCCEEEeecccccccccc------ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCcee
Q 000086 271 IFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH------QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG 344 (2304)
Q Consensus 271 i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~------qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~G 344 (2304)
++||+-+.|.+|+|.+++.|.++|++.+ |....-. -.-+-.+|+..++++.++.++..|.++.+.+|..|
T Consensus 572 ilvekSlkGwkevEyevvrDa~~nciTv----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvG 647 (1435)
T KOG0370|consen 572 ILVEKSLKGWKEVEYEVVRDAYDNCITV----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVG 647 (1435)
T ss_pred eeehhhhccccceEEEEEeccccchhhh----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcc
Confidence 9999999999999999999999999987 6443222 12344679999999999999999999999999999
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ip 400 (2304)
-++++|.++|.+-++++||+|+|++.+..+...+||..|......+++|+||+.+|
T Consensus 648 EcniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgypLAy~aAKlalg~~lpe~~ 703 (1435)
T KOG0370|consen 648 ECNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYPLAYTAAKLALGIPLPELK 703 (1435)
T ss_pred cccceeeecccceeEEEEEEEeEEeehhhhhccCccCcHHHHHHHHhcCcccccCC
Confidence 99999999998889999999999999999999999999999999999999998764
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-21 Score=218.20 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=136.5
Q ss_pred ccccCCCceecccCC----CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1916 GIFDKDSFVETLEGW----ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1916 gl~D~gsF~E~~~~~----a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
++||+ |+|+..+. .+++|.|+||++|+||.||..+.+. +..+++...+ |...|++.+|+.|
T Consensus 77 ~i~~d--f~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG~------------dtk~~~~rNF-Gm~~PeGyRKAlR 141 (317)
T COG0825 77 LLFTD--FVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGR------------DTKEKLKRNF-GMPRPEGYRKALR 141 (317)
T ss_pred HHHhH--HHHhcCccccCcChhheeeeeeECCeeEEEEeeecCc------------cchhHHHhcC-CCCCchHHHHHHH
Confidence 36664 99998754 5799999999999999999998653 2344444454 6899999999999
Q ss_pred HHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceee
Q 000086 1992 ALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMY 2071 (2304)
Q Consensus 1992 ~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~ 2071 (2304)
.+++|++|++|||+|+||+|.-+|..+|..|+..++|+.+..++..+||+|++|. ||.++|..++++. .|. +|
T Consensus 142 lm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVI--GEGgSGGALAi~v---ad~--V~ 214 (317)
T COG0825 142 LMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVI--GEGGSGGALAIGV---ADR--VL 214 (317)
T ss_pred HHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEe--cCCCchhhHHhhH---HHH--HH
Confidence 9999999999999999999999999999999999999999999999999999999 7755555566665 365 89
Q ss_pred cccCcEEEeeCccchhhhhcchh
Q 000086 2072 ADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2072 A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
|..+|.++|++|||++.|.||+.
T Consensus 215 mle~s~ySVisPEG~AsILWkD~ 237 (317)
T COG0825 215 MLENSTYSVISPEGCASILWKDA 237 (317)
T ss_pred HHHhceeeecChhhhhhhhhcCh
Confidence 99999999999999999999976
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=252.99 Aligned_cols=312 Identities=21% Similarity=0.217 Sum_probs=222.2
Q ss_pred ccccCCCCCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000086 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2304)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~va 87 (2304)
|.++|++.+|+++|.. ..+..+.-+-+|....-|.. .+..|+.++.++-+-
T Consensus 87 q~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~----------------- 137 (727)
T PRK14016 87 QNLAGMPVGFGRTRET---SEPGVYQVVFEYKEEEVGRE---------ALELAVDLVNAAIND----------------- 137 (727)
T ss_pred HHHhCCCcceeEEEEc---CCCCEEEEEEEeCCHHHHHH---------HHHHHHHHHHHHhhC-----------------
Confidence 5678999999998663 12112222222222222222 245666666666532
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCE--------EEeCCCcCCCCCchHHHHHHCCCeE
Q 000086 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDA--------VWPGWGHASEIPELPDTLSTKGIIF 159 (2304)
Q Consensus 88 t~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDa--------V~pG~G~~SEn~~la~~l~~~GI~f 159 (2304)
.+-|.+....+++.+++.+.+++.+ ..|+++|++.++++ |++|||+.++. +...+ .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~lgpst--------~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~------i~~~~--~ 201 (727)
T PRK14016 138 TPFDLEAALARLRELDEDERLGPST--------AAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRR------IQAAE--T 201 (727)
T ss_pred CCcCHHHHHHHHHHHHHhcccCCCH--------HHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHH------HHHhc--C
Confidence 1237788899999999999997643 58999999999988 99999997763 34444 3
Q ss_pred ECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 160 iGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
.+++..++..++||..++++++++|||+|++.. +.+.+++.++++++||||||||..
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~-----------------------v~s~~~a~~~a~~iG~PvVVKP~~ 258 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRV-----------------------VTSAEDAWEAAEEIGYPVVVKPLD 258 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeE-----------------------eCCHHHHHHHHHHcCCCEEEEECC
Confidence 479999999999999999999999999999765 778999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccc---------------cceeeEEEEEcCCCCEEEeecccc
Q 000086 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQ---------------SRHLEVQLLCDQYGNVAALHSRDC 303 (2304)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g---------------~reieVqvl~D~~G~vi~l~~Rdc 303 (2304)
|++|+||++ +++++++.++++.+... +..++||+|++| .++++.++++|+++++..+..+..
T Consensus 259 G~~G~GV~~~v~~~~el~~a~~~a~~~--~~~viVEe~I~G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n 336 (727)
T PRK14016 259 GNHGRGVTVNITTREEIEAAYAVASKE--SSDVIVERYIPGKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVN 336 (727)
T ss_pred CCCCCceEEecCCHHHHHHHHHHHHHh--CCeEEEEEecCCceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhh
Confidence 999999998 99999999999988754 368999999987 444555555666555554444322
Q ss_pred cccccc----------------------------------ceEE-E-------eCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 000086 304 SVQRRH----------------------------------QKII-E-------EGPITVAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 304 Svqrr~----------------------------------qKii-e-------eaPa~~l~~e~~~~m~e~A~rlakalG 341 (2304)
.-.||. +++. . ++-+...++++.+++.+.|.++++.+|
T Consensus 337 ~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~g 416 (727)
T PRK14016 337 QDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIG 416 (727)
T ss_pred cCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcC
Confidence 111211 1111 0 011222355677889999999999999
Q ss_pred ceeeeEEEEEEEc-----cCCcEEEEEeccCCCCCcce-ehhhhcCCHHHHHHHH
Q 000086 342 YVGAATVEYLYSM-----ETGEYYFLELNPRLQVEHPV-TEWIAEINLPAAQVAV 390 (2304)
Q Consensus 342 y~Ga~tVEfl~d~-----~~g~~yfLEINpRlqgehpv-tE~vtGVDL~~~qL~i 390 (2304)
+ +.+.||++.+. ...++.++|+|..++..... .....+.|.....+..
T Consensus 417 l-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 417 L-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred C-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 8 67779998862 12467999999998865321 2223566766666654
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=196.41 Aligned_cols=110 Identities=35% Similarity=0.608 Sum_probs=100.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|||++|++++|+||++|+++ |+|.+ +.+..+.+.++||+.|.+|++++.++|+|++.|+++
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~t---------v~v~s--~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~i 69 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIET---------VAVNS--NPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDI 69 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEE---------EEEEE--GGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcc---------eeccC--chhcccccccccccceecCcchhhhhhccHHHHhhH
Confidence 6899999999999999999999999888 45666 556899999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHH
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam 167 (2304)
|+++++|++||||||++|+++|++.|++.|+.|+||++++|
T Consensus 70 a~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 70 ARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred hhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 99999999999999999999999999999999999999986
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=214.71 Aligned_cols=267 Identities=13% Similarity=0.170 Sum_probs=185.4
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
+|..+ ++..++.++++|++.|++|+ +++...+. ..-...+++|+++.+... .+..|.+...++++.
T Consensus 20 ~i~~~-~shsaL~I~~gAkeeGf~ti---------~v~~~~~~-~~y~~~~~~De~i~v~~~---~di~~~~~~~~l~~~ 85 (358)
T PRK13278 20 TIATI-GSHSSLQILKGAKKEGFRTI---------AICKKKRE-VFYKRFPVADEFIIVDDF---SDILNEAVQEKLREM 85 (358)
T ss_pred eEEEE-ecccHHHHHHHHHHCCCeEE---------EEEeCCCc-cccccccccceEEEEcch---hhhcCHHHHHHHhhc
Confidence 44444 57889999999999999985 44554433 334566788999988421 112333444444444
Q ss_pred cCCCE-EEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDa-V~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++ ++|. |....... .+.+.+.++++. |+.++++...||..++++++++|||+|++..
T Consensus 86 ---~~iiIp~-gs~v~y~~-~d~l~~~~~p~~-gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~~---------------- 143 (358)
T PRK13278 86 ---NAILIPH-GSFVAYLG-LENVEKFKVPMF-GNREILRWEADRDKERKLLEEAGIRIPRKYE---------------- 143 (358)
T ss_pred ---CcEEEeC-CCcceeec-HHHHHHCCCCcC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCEeC----------------
Confidence 44 4444 44444333 444446787766 4888999999999999999999999999532
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCcEEEEEeccccceeeE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSPIFIMKVASQSRHLEV 285 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~i~VEeyI~g~reieV 285 (2304)
+.+ +++|||||||..|.||+|+++|+|.+|+.++++.+.+. .....++||||+.| .++++
T Consensus 144 ---------~~~-------~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv 206 (358)
T PRK13278 144 ---------SPE-------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYF 206 (358)
T ss_pred ---------CHH-------HcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEE
Confidence 333 25799999999999999999999999999999987531 12568999999987 69999
Q ss_pred EEEEcC-CCCEE--Eeeccccc---cccc-----------cceE--EEeCCCCCCCHHHHHHHHHHHHHHHHH----C--
Q 000086 286 QLLCDQ-YGNVA--ALHSRDCS---VQRR-----------HQKI--IEEGPITVAPLETVKKLEQAARRLAKC----V-- 340 (2304)
Q Consensus 286 qvl~D~-~G~vi--~l~~RdcS---vqrr-----------~qKi--ieeaPa~~l~~e~~~~m~e~A~rlaka----l-- 340 (2304)
+++... +|++- .+-.|--+ ...| +... ...-|+. +...+.+++.+.+.+++++ +
T Consensus 207 ~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~~~~~~v~a~~~~~~~ 285 (358)
T PRK13278 207 HYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFEYGERFVETSKELVPP 285 (358)
T ss_pred EEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceecc-chHhHHHHHHHHHHHHHHHHHHhcCc
Confidence 999752 34432 22222111 0011 0001 1122444 6677778888888888887 4
Q ss_pred CceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 341 Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
|..|++++|+++++ ++.+|++|+|+|++|+
T Consensus 286 ~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~gg 315 (358)
T PRK13278 286 GMIGPFCLESVVTD-NLEIVVFEISARIVAG 315 (358)
T ss_pred cccCCceEEEEEcC-CCCEEEEEEeCcccCC
Confidence 66799999999984 7889999999999553
|
|
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=213.92 Aligned_cols=226 Identities=15% Similarity=0.159 Sum_probs=168.5
Q ss_pred CCCEEEeCCCc----CCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 131 RVDAVWPGWGH----ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 131 ~vDaV~pG~G~----~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
++|+|++..+. ..++ ....++..| .++++++.++..+.||..++.+++++|||+|+|..
T Consensus 57 ~~d~v~~~~~~~~~~~~~~--~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~-------------- 119 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTA--ALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGI-------------- 119 (300)
T ss_pred CCCEEEEcCCCchhhHHHH--HHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEE--------------
Confidence 67999985432 1122 356777788 56789999999999999999999999999999765
Q ss_pred CcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc--cccee
Q 000086 207 PDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS--QSRHL 283 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~--g~rei 283 (2304)
+.+.+++.++.+++ |||+||||..|+||+||+++++.+++..+++.+... +.+++||+|++ .++++
T Consensus 120 ---------~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~--~~~~lvQe~I~~~~g~d~ 188 (300)
T PRK10446 120 ---------AHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL--NAHILVQEYIKEAQGCDI 188 (300)
T ss_pred ---------eCCHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc--CCCEEEEeeeccCCCceE
Confidence 45677777777777 799999999999999999999999999888876432 36899999996 35899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
.|.++++ +++....|.++-.....+....+ .. .+.++.+++.+.|.++++++|+. .+.|||+++ ++++||+|
T Consensus 189 rv~vig~---~~~~~~~r~~~~~~~~~n~~~g~-~~-~~~~l~~~~~~~a~~a~~alg~~-~~gvD~~~~--~~g~~vlE 260 (300)
T PRK10446 189 RCLVVGD---EVVAAIERRAKEGDFRSNLHRGG-AA-SVASITPQEREIAIKAARTMALD-VAGVDILRA--NRGPLVME 260 (300)
T ss_pred EEEEECC---EEEEEEEEecCCCchhheeccCC-ee-ccCCCCHHHHHHHHHHHHHhCCC-EEEEEEEEc--CCCcEEEE
Confidence 9988753 55555444332110011111111 00 11123456889999999999996 888999998 34499999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCC
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~ 394 (2304)
+|++++.. .++.++|+|+.+.+++.....
T Consensus 261 vN~~pg~~--~~~~~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 261 VNASPGLE--GIEKTTGIDIAGKMIRWIERH 289 (300)
T ss_pred EECCCChh--hhHHHHCcCHHHHHHHHHHHh
Confidence 99998654 456789999999998876554
|
|
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=209.47 Aligned_cols=306 Identities=11% Similarity=0.111 Sum_probs=214.0
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.+-++...... -+|..+ +...|+.+++-||+.|++|+ +++..........+...+|+++.+.
T Consensus 6 ~~~~~~~y~~~~--~~i~t~-~SHsal~i~~gAk~egf~t~---------~v~~~~r~~~Y~~f~~~~d~~i~~~----- 68 (366)
T PRK13277 6 IKEILEGYDLDK--VKIGVL-ASHSALDVFDGAKDEGFRTI---------AVCQKGRERTYREFKGIVDEVIVLD----- 68 (366)
T ss_pred HHHHHhhcCccc--cEEEEE-ecchHHHHhccHHhcCCcEE---------EEEcCCCcchhhhhccccceEEEec-----
Confidence 344445444432 255555 46899999999999999984 5555443334444435689999984
Q ss_pred CCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHH-HCCCeEECCCHHHHH-HhcCHHHHHHHHHHCCCCcCCC
Q 000086 115 NNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLS-TKGIIFLGPPATSMA-ALGDKIGSSLIAQAANVPTLPW 190 (2304)
Q Consensus 115 ~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~-~~GI~fiGPs~eam~-~lgDK~~sr~laq~aGVPtpp~ 190 (2304)
+|.|+ +.+.+-.++. ++|+.-.|...+..-. +..+ +..++++|+..-.-+ .=+||..+..+++++|||+|+.
T Consensus 69 -~f~~~~~~~~~~~l~~~--n~i~iPh~sf~~y~g~-~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~ 144 (366)
T PRK13277 69 -KFKDILSEKVQDELREE--NAIFVPNRSFAVYVGY-DAIENEFKVPIFGNRYLLRWEERTGEKNYYWLLEKAGIPYPKL 144 (366)
T ss_pred -chhhhhhHHHHHHHHHC--CeEEecCCCeEEEecH-HHHhhcCCCCcccCHHHhhhhhccCHHHHHHHHHHcCCCCcee
Confidence 44332 2444444444 5555444655444222 4444 478888887544322 2379999888999999999985
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhhC--
Q 000086 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGEV-- 266 (2304)
Q Consensus 191 s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e~-- 266 (2304)
.. + .+++.|||||||..|.| |+|+++++|.+|+...........
T Consensus 145 ~~-------------------------~-------p~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I 192 (366)
T PRK13277 145 FK-------------------------D-------PEEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVI 192 (366)
T ss_pred ec-------------------------C-------ccccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcc
Confidence 43 2 24678999999999999 999999999999998877665311
Q ss_pred ---CCCcEEEEEeccccceeeEEEEEcC-CCCEEEe--eccccc----ccc---ccc---------eEEEeCCCCCCCHH
Q 000086 267 ---PGSPIFIMKVASQSRHLEVQLLCDQ-YGNVAAL--HSRDCS----VQR---RHQ---------KIIEEGPITVAPLE 324 (2304)
Q Consensus 267 ---~~~~i~VEeyI~g~reieVqvl~D~-~G~vi~l--~~RdcS----vqr---r~q---------KiieeaPa~~l~~e 324 (2304)
.-...+||||+.| .|+.++++.+. +|++..+ ..|.-+ +-| +.| -.+.+.|.+ +...
T Consensus 193 ~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~rEs 270 (366)
T PRK13277 193 DREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-IRES 270 (366)
T ss_pred cccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc-chHH
Confidence 1135579999987 79999999984 6754443 222111 000 111 112244555 6667
Q ss_pred HHHHHHHHHHHHHHHCC------ceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHH--HHcCCCC
Q 000086 325 TVKKLEQAARRLAKCVN------YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVA--VGMGIPL 396 (2304)
Q Consensus 325 ~~~~m~e~A~rlakalG------y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~--iA~G~pL 396 (2304)
+.+++.+.+.+++++++ ..|++++|++++ +++++|++|+|||++|+.++. +.+|.|.+.+.+. +.+|..+
T Consensus 271 lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~-~d~~~~V~EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~GrRI 348 (366)
T PRK13277 271 LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVT-PDLDFVVYDVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTGRRI 348 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEc-CCCcEEEEEEcCCcCCCccce-eecCCCcHHHHhcCccccCCcc
Confidence 88999999999999866 689999999998 468999999999999999887 4689999999999 9999887
Q ss_pred C
Q 000086 397 W 397 (2304)
Q Consensus 397 ~ 397 (2304)
.
T Consensus 349 a 349 (366)
T PRK13277 349 A 349 (366)
T ss_pred h
Confidence 5
|
|
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-19 Score=211.40 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=163.2
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
++|++++-.........+...++..|+++++ ++++++.+.||..++.+++++|||+|+|..
T Consensus 47 ~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~------------------ 107 (280)
T TIGR02144 47 DVDVAIIRCVSQSRALYSARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYL------------------ 107 (280)
T ss_pred CCCEEEEcCcchhhHHHHHHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEe------------------
Confidence 4577776411111112245677889999986 579999999999999999999999999865
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh--CCCCcEEEEEeccc-cceeeEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE--VPGSPIFIMKVASQ-SRHLEVQL 287 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e--~~~~~i~VEeyI~g-~reieVqv 287 (2304)
+.+.+++.++.+++|||+|+||..|+||+|+.++++.+++.++++..... ....++++|+|+++ ++++.+.+
T Consensus 108 -----~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~v 182 (280)
T TIGR02144 108 -----AFDREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFV 182 (280)
T ss_pred -----eCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEE
Confidence 56778888888889999999999999999999999999999877543221 12357999999986 47788777
Q ss_pred EEcCCCCEEEeeccccccccccceE-EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 288 LCDQYGNVAALHSRDCSVQRRHQKI-IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 288 l~D~~G~vi~l~~RdcSvqrr~qKi-ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
+++ ...+...|...-.+.+... ....|.. ++ +++.+.|.++++++|+ |.++|||++++ +|++||+|+|+
T Consensus 183 ig~---~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~----~~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~ 252 (280)
T TIGR02144 183 IGD---EAIAAIYRYSNHWRTNTARGGKAEPCP-LD----EEVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNH 252 (280)
T ss_pred ECC---EEEEEEEEcCCchhhhhhcCCceeccC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeC
Confidence 643 3332222211000101000 0111222 23 4578899999999996 68899999983 66899999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
|++... ++..+|+|+.+..++.+.
T Consensus 253 ~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 253 VPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred Ccchhh--hhHhhCCCHHHHHHHHHH
Confidence 987643 456899999999998764
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=192.26 Aligned_cols=167 Identities=22% Similarity=0.379 Sum_probs=138.2
Q ss_pred HHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEee-cCCCCCcCeEEECCHHHHHHH
Q 000086 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKA-SWGGGGKGIRKVHNDDEVRAL 258 (2304)
Q Consensus 180 aq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKP-s~GgGGkGIr~V~s~eEL~~a 258 (2304)
++++|+|+|||.. +.+.+|+..+++++|||+|+|+ ..|..|||..++++.+|+..+
T Consensus 1 l~~~gip~~~~~~-----------------------i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a 57 (172)
T PF02222_consen 1 LDELGIPTAPYAT-----------------------IDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKA 57 (172)
T ss_dssp HHHTT--B-EEEE-----------------------ESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHH
T ss_pred CcccCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHH
Confidence 5789999999987 8899999999999999999995 555699999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 000086 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2304)
Q Consensus 259 ~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlak 338 (2304)
++.+ ...++++|+|++..+|++|.+..+.+|++..+.. -..+++.+......+|+. +++++.+++.+.|.++++
T Consensus 58 ~~~~----~~~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp~-~en~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~ 131 (172)
T PF02222_consen 58 WQEL----GGGPCILEEFVPFDREISVIVARDQDGEIRFYPP-VENVHRDGILHESIAPAR-ISDEVEEEAKEIARKIAE 131 (172)
T ss_dssp HHHT----TTSCEEEEE---ESEEEEEEEEEETTSEEEEEEE-EEEEEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHH
T ss_pred HHhc----CCCcEEEEeccCCcEEEEEEEEEcCCCCEEEEcC-ceEEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHH
Confidence 9987 3679999999999999999999999998776433 356677776666778987 889999999999999999
Q ss_pred HCCceeeeEEEEEEEccCCc-EEEEEeccCCCCCcceeh
Q 000086 339 CVNYVGAATVEYLYSMETGE-YYFLELNPRLQVEHPVTE 376 (2304)
Q Consensus 339 alGy~Ga~tVEfl~d~~~g~-~yfLEINpRlqgehpvtE 376 (2304)
+++|+|++.|||+++. +|+ +||.|+.||+..+..+|-
T Consensus 132 ~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSGh~Ti 169 (172)
T PF02222_consen 132 ALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPHNSGHWTI 169 (172)
T ss_dssp HHTSSEEEEEEEEEET-TSTEEEEEEEESS--GGGGGHH
T ss_pred HcCcEEEEEEEEEEec-CCCEEEEEeccCCccCcccEee
Confidence 9999999999999994 676 999999999988765553
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=224.05 Aligned_cols=283 Identities=16% Similarity=0.167 Sum_probs=199.3
Q ss_pred hhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC
Q 000086 33 SEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT 112 (2304)
Q Consensus 33 ~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~ 112 (2304)
..+.+++++.|..++. +-+......|.++. +++||+.+ ..++ ..+.++. |+.+.+++.+
T Consensus 178 ~~l~e~a~~~G~~~i~--L~V~~~N~~Ai~fY---~klGf~~~---------~~y~--~~d~~~~-----~~~~~~g~~~ 236 (547)
T TIGR03103 178 RALAEHFQSRGCAYMD--LSVMHDNEQAIALY---EKLGFRRI---------PVFA--LKRKNAI-----NERLFSGPAP 236 (547)
T ss_pred HHHHHHHHHCCCCEEE--EEEcCCCHHHHHHH---HHCCCEEe---------eEEE--EeccCCc-----CcccccCCCc
Confidence 3455666666544321 12223345555444 57888764 3344 3344554 8988887655
Q ss_pred CCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchH-------HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHC
Q 000086 113 NNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELP-------DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2304)
Q Consensus 113 ~~~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la-------~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~a 183 (2304)
..+ +|. +.|++.|++.++++++.. +|+..+. ..|... +. .-+++.+|..++||..++++++++
T Consensus 237 ~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~g~~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~a 308 (547)
T TIGR03103 237 EAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSLGGRSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEA 308 (547)
T ss_pred ccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecCCceEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHc
Confidence 433 566 999999999999999944 4444442 111111 11 126899999999999999999999
Q ss_pred CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEE-ECCHHHHHHHHHHH
Q 000086 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK-VHNDDEVRALFKQV 262 (2304)
Q Consensus 184 GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~-V~s~eEL~~a~~~~ 262 (2304)
|||+|+|.. +.+.+++.++++++| |+||||..|++|+||++ +++.++|.++++.+
T Consensus 309 GIpVP~~~~-----------------------~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a 364 (547)
T TIGR03103 309 GLQVPEQQL-----------------------AGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKA 364 (547)
T ss_pred CcCCCCEEE-----------------------ECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHH
Confidence 999999876 567888888999999 69999999999999997 99999999999988
Q ss_pred HhhCCCCcEEEEEecccc--cee-------------eEEEEEcCCCCEEEeeccccccccc-------------------
Q 000086 263 QGEVPGSPIFIMKVASQS--RHL-------------EVQLLCDQYGNVAALHSRDCSVQRR------------------- 308 (2304)
Q Consensus 263 ~~e~~~~~i~VEeyI~g~--rei-------------eVqvl~D~~G~vi~l~~RdcSvqrr------------------- 308 (2304)
.... ..++||+|++|. |++ +.++++|+++++..|.++...-.++
T Consensus 365 ~~~~--~~vlvEe~i~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~ 442 (547)
T TIGR03103 365 RQFC--DRVLLERYVPGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLA 442 (547)
T ss_pred HhcC--CcEEEEEeccCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHH
Confidence 7553 589999999874 344 6678888888877766554211000
Q ss_pred ------------cceEE--------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc-cCCcEEEEEeccC
Q 000086 309 ------------HQKII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-ETGEYYFLELNPR 367 (2304)
Q Consensus 309 ------------~qKii--------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~-~~g~~yfLEINpR 367 (2304)
.+++. .++.+..++.++.+++.++|+++++++|+. .+.||++.+. ...++.|||+|.|
T Consensus 443 ~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEvN~~ 521 (547)
T TIGR03103 443 EAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEANER 521 (547)
T ss_pred HcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEecCC
Confidence 11110 012223345678889999999999999985 6679999863 1234699999999
Q ss_pred CCCC
Q 000086 368 LQVE 371 (2304)
Q Consensus 368 lqge 371 (2304)
++-.
T Consensus 522 Pgl~ 525 (547)
T TIGR03103 522 PGLA 525 (547)
T ss_pred cccc
Confidence 9855
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=185.87 Aligned_cols=70 Identities=27% Similarity=0.449 Sum_probs=67.4
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
.++..|+|||||+|++|+|++||+|++||+|++||+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 82 ~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 82 AGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 357889999999999999999999999999999999999999999999999999 9999999999999987
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=197.93 Aligned_cols=197 Identities=18% Similarity=0.184 Sum_probs=154.1
Q ss_pred CccccC----CCCChHHHhhcccCCCCCcccccccCCCceeccc--------CC--------------------CCeEEE
Q 000086 1889 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--------GW--------------------ARTVVT 1936 (2304)
Q Consensus 1889 ~~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~--------~~--------------------a~~vVt 1936 (2304)
..++|. ....+|++|+. |+|+|||.|+.. .| +++|||
T Consensus 57 ~~vcp~c~~h~rltAreRI~~-----------L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVt 125 (296)
T CHL00174 57 MNICEQCGYHLKMSSSDRIEL-----------LIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQT 125 (296)
T ss_pred CCCCCCCCCCcCCCHHHHHHH-----------HccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEE
Confidence 345665 66789999997 899999999842 22 479999
Q ss_pred EEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCch
Q 000086 1937 GRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 2016 (2304)
Q Consensus 1937 G~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~ 2016 (2304)
|+|+|+|+||.|+|+|++++ ||+++...++|++|+++.|.+.++|||+|.++.|
T Consensus 126 G~G~I~Gr~v~v~a~Dftf~---------------------gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGG----- 179 (296)
T CHL00174 126 GIGQLNGIPVALGVMDFQFM---------------------GGSMGSVVGEKITRLIEYATNESLPLIIVCASGG----- 179 (296)
T ss_pred EEEEECCEEEEEEEECCccc---------------------ccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCC-----
Confidence 99999999999999999877 9999999999999999999999999999999998
Q ss_pred hhhhhhHHH--HHHHHHHHHH----cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhh
Q 000086 2017 RDLFEGILQ--AGSTIVENLR----TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIK 2090 (2304)
Q Consensus 2017 ~~e~~gilk--~ga~iv~al~----~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~ 2090 (2304)
..|++|+.. ..+++..++. ...+|+|++++ |.+.||.++.+.. ..|+ ++|.|+|.+|+.||+-+-..
T Consensus 180 ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~--gPt~GG~aas~a~--l~Di--iiae~~A~IgfAGPrVIe~t- 252 (296)
T CHL00174 180 ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILT--SPTTGGVTASFGM--LGDI--IIAEPNAYIAFAGKRVIEQT- 252 (296)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEc--CCCchHHHHHHHH--cccE--EEEeCCeEEEeeCHHHHHHh-
Confidence 466777754 3355533332 57799999999 6666665554432 3577 78999999999999654110
Q ss_pred cchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCccee
Q 000086 2091 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2170 (2304)
Q Consensus 2091 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~v 2170 (2304)
+ +..++ +.++++..+.++|+||.|
T Consensus 253 ---------~-----------------ge~lp------------------------------e~fq~ae~l~~~G~vD~i 276 (296)
T CHL00174 253 ---------L-----------------NKTVP------------------------------EGSQAAEYLFDKGLFDLI 276 (296)
T ss_pred ---------c-----------------CCcCC------------------------------cccccHHHHHhCcCceEE
Confidence 0 00111 234688889999999999
Q ss_pred cCccchHHHHHHHHH
Q 000086 2171 VDWDKSRSFFCRRLR 2185 (2304)
Q Consensus 2171 i~~~~tR~~~~~~L~ 2185 (2304)
|++++.|..+...|+
T Consensus 277 V~r~~lr~~l~~ll~ 291 (296)
T CHL00174 277 VPRNLLKGVLSELFQ 291 (296)
T ss_pred EcHHHHHHHHHHHHH
Confidence 999999999987775
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=185.23 Aligned_cols=197 Identities=21% Similarity=0.285 Sum_probs=158.0
Q ss_pred CccccC----CCCChHHHhhcccCCCCCcccccccCCCceecccC--------------C-------------CCeEEEE
Q 000086 1889 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--------------W-------------ARTVVTG 1937 (2304)
Q Consensus 1889 ~~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~--------------~-------------a~~vVtG 1937 (2304)
...+|. ...+++++|+. ++|.|||.|+..+ | .++||||
T Consensus 47 ~~vcp~c~~h~ri~A~~Ri~~-----------llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg 115 (294)
T COG0777 47 LKVCPKCGHHMRISARERLEA-----------LLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTG 115 (294)
T ss_pred hhcccccCcccccCHHHHHHH-----------hhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEE
Confidence 345776 67789999997 7999999998542 2 4699999
Q ss_pred EEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchh
Q 000086 1938 RARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQR 2017 (2304)
Q Consensus 1938 ~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~ 2017 (2304)
.|+|+|.||.+++.|+.|+ ||+++...+.|++|+++.|...++|+|+|.-+.| .
T Consensus 116 ~g~i~G~pvv~av~df~Fm---------------------gGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGG-----A 169 (294)
T COG0777 116 EGTINGLPVVLAVMDFAFM---------------------GGSMGSVVGEKITRAIERAIEDKLPLVLFSASGG-----A 169 (294)
T ss_pred eeEECCeEEEEEEEecccc---------------------ccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcc-----h
Confidence 9999999999999999988 9999999999999999999999999999999988 8
Q ss_pred hhhhhHHHH--HHH---HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2018 DLFEGILQA--GST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2018 ~e~~gilk~--ga~---iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
.|++|++.. .++ .+.-++++..|.|+|++ ..+.||.-+.++. -.|+ .+|.|.|.||+.||+-+- -
T Consensus 170 RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt--~PTtGGVsASfA~--lGDi--~iAEP~AlIGFAGpRVIE-Q--- 239 (294)
T COG0777 170 RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFAM--LGDI--IIAEPGALIGFAGPRVIE-Q--- 239 (294)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEec--CCCccchhHhHHh--ccCe--eecCcccccccCcchhhh-h---
Confidence 999999863 344 45557778899999999 6778874333332 1377 899999999999996541 0
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
.+.+ ..-|-++++..+.++|+||.||+
T Consensus 240 -----------------------------------Tire------------------~LPegfQ~aEfLlehG~iD~iv~ 266 (294)
T COG0777 240 -----------------------------------TIRE------------------KLPEGFQTAEFLLEHGMIDMIVH 266 (294)
T ss_pred -----------------------------------hhcc------------------cCCcchhhHHHHHHcCCceeeec
Confidence 0001 11245678999999999999999
Q ss_pred ccchHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLR 2185 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~ 2185 (2304)
..+.|..+...|.
T Consensus 267 R~elr~tla~ll~ 279 (294)
T COG0777 267 RDELRTTLASLLA 279 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887765543
|
|
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-17 Score=186.42 Aligned_cols=186 Identities=20% Similarity=0.273 Sum_probs=131.9
Q ss_pred HHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHH--HHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHH
Q 000086 179 IAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVR 256 (2304)
Q Consensus 179 laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~ 256 (2304)
+++++|||||+|.. +. -.+... .......++||++|||..+|+|.||.+|+|.+||.
T Consensus 1 l~~~~gI~tp~~~~----~~-----------------~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~ 59 (203)
T PF07478_consen 1 LLKSAGIPTPPYVV----VK-----------------KNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELE 59 (203)
T ss_dssp HHHHTT-BB-SEEE----EE-----------------TTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHH
T ss_pred ChhhcCCCCCCEEE----Ee-----------------cccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHH
Confidence 57899999999976 10 011111 34567789999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccc--ccccc-------ceEEEeCCCCCCCHHHHH
Q 000086 257 ALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS--VQRRH-------QKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 257 ~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcS--vqrr~-------qKiieeaPa~~l~~e~~~ 327 (2304)
.+++++... +.+++||+|++| +|++|-+++++...+......... +.... .......|+. +++++.+
T Consensus 60 ~ai~~~~~~--~~~vlVEefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~ 135 (203)
T PF07478_consen 60 EAIEKAFKY--DDDVLVEEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQE 135 (203)
T ss_dssp HHHHHHTTT--HSEEEEEE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHH
T ss_pred HHHHHHhhh--cceEEEEeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHH
Confidence 999998743 579999999954 999999999876555444322211 11111 2233345665 8899999
Q ss_pred HHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 328 ~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|.+.|.++.+++|.+|.+.|||+++ ++|++||+|+|+-++-+ .|..-...|+++.++..++
T Consensus 136 ~i~~~a~~a~~~lg~~~~~RiD~rv~-~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 136 KIKEIAKKAFKALGCRGYARIDFRVD-EDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEE-TTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEec-cCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999998 47899999999988743 1323334677776665543
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=184.65 Aligned_cols=237 Identities=20% Similarity=0.293 Sum_probs=183.5
Q ss_pred cCCCEEEe-CCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWP-GWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~p-G~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|.++| +.|+..|+-.+...|+-.|++++|++..+-..++||..+|.+++..|+|+++|..- ..
T Consensus 60 ~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~-------------~~ 126 (317)
T COG1181 60 QKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVAL-------------TR 126 (317)
T ss_pred ccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeee-------------ec
Confidence 35677776 46778899899999999999999999999999999999999999999999998760 00
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
.- . +.....+..+..+||++|||...+++.|+.+|++.+|+..+.+.+... +..+++|+|+. ++|++|.++
T Consensus 127 ~~-----~-~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~--d~~vl~e~~~~-~rei~v~vl 197 (317)
T COG1181 127 DE-----Y-SSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY--DRDVLREQGIT-GREIEVGVL 197 (317)
T ss_pred cc-----c-hhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh--CCceeeccCCC-cceEEEEec
Confidence 00 0 223344566789999999999999999999999999999977777644 57899999998 699999999
Q ss_pred EcCCCCEEEe-----eccccccccccceEEE------eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCC
Q 000086 289 CDQYGNVAAL-----HSRDCSVQRRHQKIIE------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2304)
Q Consensus 289 ~D~~G~vi~l-----~~RdcSvqrr~qKiie------eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g 357 (2304)
.+.. ....+ ....-.++-+..|.+. ..|+. +++++.+++.++|.++.+++|..|.+.+||++++.+|
T Consensus 198 ~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g 275 (317)
T COG1181 198 GNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEG 275 (317)
T ss_pred CCcc-cceecCceEEecCCCeEEeeeccccCCCCceeeCCCC-CCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCC
Confidence 8854 22222 1111233344445554 23443 8999999999999999999999999999999994358
Q ss_pred cEEEEEeccCCCCC--c--ceehhhhcCCHHHHHHHH
Q 000086 358 EYYFLELNPRLQVE--H--PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 358 ~~yfLEINpRlqge--h--pvtE~vtGVDL~~~qL~i 390 (2304)
++|++|+|+.+|-. | |-.-...|+++..+...+
T Consensus 276 ~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~ 312 (317)
T COG1181 276 EFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRF 312 (317)
T ss_pred CEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHHH
Confidence 89999999999843 2 333334566666555443
|
|
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=173.29 Aligned_cols=167 Identities=20% Similarity=0.278 Sum_probs=130.3
Q ss_pred cCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcE-EEeecCCCCCcCeEEE
Q 000086 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPA-MIKASWGGGGKGIRKV 249 (2304)
Q Consensus 171 gDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPV-VIKPs~GgGGkGIr~V 249 (2304)
++|..+|++|+++||||++|.. +++.+++.+++++.++|+ ||||..-.+||||.++
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~~-----------------------f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~ 57 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYKV-----------------------FTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIA 57 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EEE-----------------------ESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCeeE-----------------------ECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEe
Confidence 4899999999999999999876 789999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEE-----------
Q 000086 250 HNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE----------- 314 (2304)
Q Consensus 250 ~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiie----------- 314 (2304)
.|.+|..++++++.... .+++++||||+.| +|+++.++.|+.. ++.+. .-+.|.++.+
T Consensus 58 ~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G-~E~S~~a~~dG~~-~~~lp-----~aqD~Kr~~dgd~GpnTGGMG 130 (194)
T PF01071_consen 58 DDREEALEALREIFVDRKFGDAGSKVVIEEFLEG-EEVSLFALTDGKN-FVPLP-----PAQDHKRLFDGDTGPNTGGMG 130 (194)
T ss_dssp SSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S-EEEEEEEEEESSE-EEEEE-----EBEEEEEEETTTEEEEESESE
T ss_pred CCHHHHHHHHHHhccccccCCCCCcEEEEeccCC-eEEEEEEEEcCCe-EEECc-----chhccccccCCCCCCCCCCcc
Confidence 99999999999987532 2479999999977 8999999999863 33331 2233555433
Q ss_pred -eCCCCCCCHHHHHHHHH-HHHHHHHHC-----CceeeeEEEEEEEccCCcEEEEEeccCCC
Q 000086 315 -EGPITVAPLETVKKLEQ-AARRLAKCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQ 369 (2304)
Q Consensus 315 -eaPa~~l~~e~~~~m~e-~A~rlakal-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlq 369 (2304)
.+|.+.++++..+++.+ ....+.+++ .|+|...+.++++ ++++++||.|.|++
T Consensus 131 a~sp~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt--~~Gp~vlEfN~RfG 190 (194)
T PF01071_consen 131 AYSPVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLT--EDGPKVLEFNVRFG 190 (194)
T ss_dssp EEESTTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEE--TTEEEEEEEESSGS
T ss_pred ceeecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEe--CCCcEEEEEeCCCC
Confidence 24888888888877765 555555544 8899999999999 67799999999997
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=176.93 Aligned_cols=299 Identities=18% Similarity=0.196 Sum_probs=210.2
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
-|+|+|+...-..+.||..+.-+. .. +...|--.. .+.|++.....-++. .++.. +..+.++|++
T Consensus 5 gviilGgahgtlalARSfg~~~vp---------v~--~ls~d~plP-t~Sr~vr~t~~w~gp-hd~ga--iafLrd~Aek 69 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVP---------VL--ALSADGPLP-TYSRIVRVTTHWNGP-HDEGA--IAFLRDFAEK 69 (415)
T ss_pred ceEEEcccchhHHHHHhhccccce---------EE--EEecCCCCc-chhhhheeeeccCCC-CcccH--HHHHHHHHhh
Confidence 478998877777777777654322 22 332343233 388888888887663 33334 7899999999
Q ss_pred cCCCE---EEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 130 TRVDA---VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 130 ~~vDa---V~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
++-.. |-.|-|..--.....+.|.+. ..++-|+....+.+-+|-..+..|.+.|+|+|.+..
T Consensus 70 hglkg~LLva~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~-------------- 134 (415)
T COG3919 70 HGLKGYLLVACGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYL-------------- 134 (415)
T ss_pred cCcCceEEEecCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceEE--------------
Confidence 97654 222322211111122444332 234559999999999999999999999999999776
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCC-----CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-----GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-----GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~r 281 (2304)
++|..+. ...++-||||+||-.|+ +-+....+.|.+|+..++..+.++...+.++||+||+|+.
T Consensus 135 ---------v~S~~d~--~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGg 203 (415)
T COG3919 135 ---------VNSEIDT--LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGG 203 (415)
T ss_pred ---------ecchhhh--hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCC
Confidence 6665554 45678999999999988 4456778899999999999999988778999999999986
Q ss_pred eeeE--EEEEcCCCCEEEeeccccccccccceEEEeC-CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 282 HLEV--QLLCDQYGNVAALHSRDCSVQRRHQKIIEEG-PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 282 eieV--qvl~D~~G~vi~l~~RdcSvqrr~qKiieea-Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
|-.. -.+.|. |..+.. |+-.|-.|.-...+ .++.+.-...+++.++|+++++.+++.|...|||++|+.||.
T Consensus 204 E~qfsyaAlw~~-g~pvae----ftarr~rqyPvdfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs 278 (415)
T COG3919 204 ENQFSYAALWDK-GHPVAE----FTARRLRQYPVDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGS 278 (415)
T ss_pred cccchHHHHHhC-CCchhh----hhcchhhcCCcccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCc
Confidence 5332 234454 444432 44444333322111 011111111578899999999999999999999999999999
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCC
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~p 395 (2304)
+.++|+|||++...-+.. +.|+||-.....+..+.+
T Consensus 279 ~KlldvNpRpw~wfgl~t-aaG~nLg~~Lwa~~~~~~ 314 (415)
T COG3919 279 YKLLDVNPRPWRWFGLVT-AAGYNLGRYLWADRINNE 314 (415)
T ss_pred eeEEeecCCCcceeeEEe-cccccccceEEeeecCCc
Confidence 999999999988765553 589999988887777654
|
|
| >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-16 Score=172.10 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=68.4
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
+++.|+|||+|++++++|++||+|++||+|++||||||+|+|.||.+|+|+.| +++|+.|+.||+|++|++
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999 899999999999999864
|
|
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-16 Score=174.21 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=87.0
Q ss_pred hcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEE
Q 000086 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249 (2304)
Q Consensus 170 lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V 249 (2304)
|.||..+++.++++|||+|.+... .......+|+|+||..|.||.||+++
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~------------------------------~~~~~~~~~~viKp~~G~Gg~~i~~~ 50 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRD------------------------------SEPEPIDGPWVIKPRDGAGGEGIRIV 50 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------------------------------------EESS--SSSEEEEESS-------B--
T ss_pred CCCHHHHHHHHHccCCCCCCcccc------------------------------ccccccCCcEEEEeCCCCCCCCeEEE
Confidence 689999999999999999932220 00112378999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccc-cc-cceEEEeCCCCCCCHHHHH
Q 000086 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQ-RR-HQKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 250 ~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvq-rr-~qKiieeaPa~~l~~e~~~ 327 (2304)
++.+++........ ++|+|++| .++++.+++++.+..+....|.-.-. .. ...--...|.. .....
T Consensus 51 ~~~~~~~~~~~~~~--------i~Qe~i~G-~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~ 118 (161)
T PF02655_consen 51 DSEDELEEFLNKLR--------IVQEFIEG-EPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKE 118 (161)
T ss_dssp SS--TTE---------------EEEE---S-EEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHH
T ss_pred CCchhhccccccce--------EEeeeeCC-EEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC---CchHH
Confidence 99998876554422 99999987 89999999987544333322221000 00 11112223443 34488
Q ss_pred HHHHHHHHHHHHC-CceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 328 KLEQAARRLAKCV-NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 328 ~m~e~A~rlakal-Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
++.+.+.++++++ |+.|...|||+++ ++++|+||||||++++
T Consensus 119 ~~~~~~~~i~~~l~gl~G~~giD~I~~--~~~~~viEINPR~t~S 161 (161)
T PF02655_consen 119 EIIELARRIAEALPGLRGYVGIDFILD--DGGPYVIEINPRFTGS 161 (161)
T ss_dssp HHHHHHHHHHTTSTT--EEEEEEEEES--S-SEEEEEEESS--GG
T ss_pred HHHHHHHHHHHHcCCCeeeEeEEEEEe--CCcEEEEEEcCCCCCC
Confidence 9999999999999 9999999999998 6899999999999864
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=176.40 Aligned_cols=228 Identities=18% Similarity=0.237 Sum_probs=162.8
Q ss_pred HcCCCEEEeCCCcCCCC-CchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGWGHASEI-PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn-~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..+.|++++--+..... ..+.+.++..|..++ +++.++..|+||..+.+++..+|+|+|+|..
T Consensus 76 ~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i--------------- 139 (318)
T COG0189 76 LDELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLI--------------- 139 (318)
T ss_pred hccCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEE---------------
Confidence 34668888764433332 334567888999888 9999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHh-hccCCcEEEeecCCCCCcCeEEECCHH-HHHHHHHHHHhhCCCCcEEEEEeccccc-eee
Q 000086 208 DDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKVHNDD-EVRALFKQVQGEVPGSPIFIMKVASQSR-HLE 284 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V~s~e-EL~~a~~~~~~e~~~~~i~VEeyI~g~r-eie 284 (2304)
+.+.++...+. +..|||+|+||.+|+||+||.+|+|.+ ++.+..+...... ...+++|+|++.+. ..-
T Consensus 140 --------~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~-~~~~ivQeyi~~~~~~~r 210 (318)
T COG0189 140 --------TRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEG-RKLIIVQEYIPKAKRDDR 210 (318)
T ss_pred --------EcCHHHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccc-cceEehhhhcCcccCCcE
Confidence 55655555554 557899999999999999999999999 8888887776432 23699999998765 444
Q ss_pred EEEEEcCCCCEEEeecccccccccc----ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRH----QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~----qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
.-++.| |.+++.+ .++|.. .|---..-......++-+++++.|+++++++|. +...||++.+ ++++|
T Consensus 211 rivv~~--~~~~~~y----~~~R~~~~~~~R~N~a~Gg~~e~~~l~~e~~elA~kaa~~lGl-~~~GVDiie~--~~g~~ 281 (318)
T COG0189 211 RVLVGG--GEVVAIY----ALARIPASGDFRSNLARGGRAEPCELTEEEEELAVKAAPALGL-GLVGVDIIED--KDGLY 281 (318)
T ss_pred EEEEeC--CEEeEEe----eeccccCCCCceeeccccccccccCCCHHHHHHHHHHHHHhCC-eEEEEEEEec--CCCcE
Confidence 445554 4555533 233311 011000111112233446788999999999986 6777999998 78899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHH
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA 391 (2304)
++|+|.-+.+-+. ++..+|+|.....++..
T Consensus 282 V~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 282 VTEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred EEEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 9999996554443 44568888888777653
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-15 Score=189.78 Aligned_cols=151 Identities=21% Similarity=0.183 Sum_probs=118.4
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCC-ceecccCCC----------CeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLEGWA----------RTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gs-F~E~~~~~a----------~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
....+|++|+. |||+|| |+|+.+.++ .+||||+|+|+|+||+|+++|+++.
T Consensus 80 gkltaReRI~~-----------LlD~gS~F~El~~lag~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~tv~------- 141 (569)
T PLN02820 80 NKLLPRERIDR-----------LLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPTVK------- 141 (569)
T ss_pred CCCCHHHHHHH-----------HcCCCCCeEEchhhccCCcccccCCCCeEEEEEEEECCEEEEEEEECCCcc-------
Confidence 56889999997 899999 999875333 5799999999999999999987765
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCC-CCchhhhhhhHHHHHHHHHHH---HHcCCC
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF-SGGQRDLFEGILQAGSTIVEN---LRTYKQ 2039 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf-~~G~~~e~~gilk~ga~iv~a---l~~~~v 2039 (2304)
||++++.+++|++|++++|.++++|||+|+|++|. ++++ .+........++++.+ ++...+
T Consensus 142 --------------GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q-~e~~~~~~~~g~if~~~~~ls~~~V 206 (569)
T PLN02820 142 --------------GGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQ-AEVFPDRDHFGRIFYNQARMSSAGI 206 (569)
T ss_pred --------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCccc-ccccchHhHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999994 3432 2222222233555555 555679
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
|+|++|+ |.++.||+|... +..++ +++.+++++++.+|+
T Consensus 207 P~Isvv~-G~~~gGgAy~~a---~~D~v--im~~~~a~i~~aGP~ 245 (569)
T PLN02820 207 PQIALVL-GSCTAGGAYVPA---MADES--VIVKGNGTIFLAGPP 245 (569)
T ss_pred CEEEEEe-CCCChHHHHHHH---hCCce--EEecCCcEEEecCHH
Confidence 9999999 345666777642 22344 677899999999994
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=197.01 Aligned_cols=310 Identities=21% Similarity=0.227 Sum_probs=210.7
Q ss_pred ccccCCCCCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000086 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2304)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~va 87 (2304)
|.++||+.+|+++|.+ ..+..+.-+-+|..+.-|.. .+..|++++.++.+-+..
T Consensus 86 ~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~~~~-------------- 139 (864)
T TIGR02068 86 QNLAGMPVGFGRTRET---ATPGVYNVVVEYSHEQVGRY---------AGRLAVDLVRSAIDDGPF-------------- 139 (864)
T ss_pred HHHhCCCcccceEEec---CCCCeEEEEEEehhHHHhHH---------HHHHHHHHHHHHHhcCCC--------------
Confidence 5689999999999764 12222322333333333333 367788888888764321
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEe--------CCCcCCCCCchHHHHHHCCCeE
Q 000086 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP--------GWGHASEIPELPDTLSTKGIIF 159 (2304)
Q Consensus 88 t~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~p--------G~G~~SEn~~la~~l~~~GI~f 159 (2304)
|.+..-.+++...+...+++ +...|++.|.+.++....- |||.... .+.+ -.+
T Consensus 140 ---~~~~~~~~~~~~~~~~~~g~--------st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~------~~~~--~~t 200 (864)
T TIGR02068 140 ---DLEQALQRLRDLVADASLGP--------STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQK------RIQA--TET 200 (864)
T ss_pred ---CHHHHHHHHHHHHHhccCCC--------cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEE------EEEe--ecC
Confidence 33333445555444444443 2478999999999876543 3332111 0111 112
Q ss_pred ECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 160 iGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
--.+..++..+.||..++++++++|||+|+|.. +.+.+++.++++++|||+||||..
T Consensus 201 ~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~-----------------------~~s~~ea~~~~~~ig~PvVVKP~~ 257 (864)
T TIGR02068 201 DRTSAIAVEIACDKDLTKEILSDAGVPVPEGTV-----------------------VQSAEDAWEAAQDLGYPVVIKPYD 257 (864)
T ss_pred CCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEECC
Confidence 236788999999999999999999999999765 678999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeecccccc-------------
Q 000086 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------- 305 (2304)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSv------------- 305 (2304)
|++|+||.+ +++.+++.++++.+... +..++||+|++| +++.+-++. |+++....|....
T Consensus 258 g~~G~GV~l~v~s~~el~~a~~~a~~~--~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi 331 (864)
T TIGR02068 258 GNHGRGVTINILTRDEIESAYEAAVEE--SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELI 331 (864)
T ss_pred CCCccCEEEEeCCHHHHHHHHHHHHhh--CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHH
Confidence 999999998 99999999999988754 368999999986 899986654 4566654444311
Q ss_pred ------ccc---cceEEE---------------------------------------eCCCCCCCHHHHHHHHHHHHHHH
Q 000086 306 ------QRR---HQKIIE---------------------------------------EGPITVAPLETVKKLEQAARRLA 337 (2304)
Q Consensus 306 ------qrr---~qKiie---------------------------------------eaPa~~l~~e~~~~m~e~A~rla 337 (2304)
.|| |.+.++ ++-+...++++.++..+.|++++
T Consensus 332 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa 411 (864)
T TIGR02068 332 EQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAA 411 (864)
T ss_pred HHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHH
Confidence 011 111110 11122345677888999999999
Q ss_pred HHCCceeeeEEEEEEEc-----cCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHc
Q 000086 338 KCVNYVGAATVEYLYSM-----ETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 338 kalGy~Ga~tVEfl~d~-----~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~ 392 (2304)
+++|+. .+.||++... +..+..++|+|+.++-. |..-..-.+.|+....+....
T Consensus 412 ~~~gl~-i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 412 KIIGLD-IAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred HHhCCC-eEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 999985 4459998752 12356899999998865 322222357788888887665
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=169.58 Aligned_cols=145 Identities=23% Similarity=0.231 Sum_probs=115.6
Q ss_pred CChHHHhhcccCCCCCcccccccCCCceecc-----------------cCCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1897 CDPRAAICGFLDNNGKWIGGIFDKDSFVETL-----------------EGWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1897 yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~-----------------~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
.++|++|+. |||+|||.|+. ...+.+||+|+|+|+|+||.|+++|++++
T Consensus 6 ltAReRi~~-----------LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~--- 71 (274)
T TIGR03133 6 ANARERARG-----------LLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQ--- 71 (274)
T ss_pred CCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCcc---
Confidence 478899886 89999999992 12368999999999999999999998877
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhc-----cCCCEEEEecCCCCCCchhhhhhhH--HHHHHHHHH
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-----EELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVE 2032 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~-----~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~ 2032 (2304)
||++++..+.|++++++.|.+ .++|+|+|.|+.|. .+++++ +-..++++.
T Consensus 72 ------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqEg~~~L~~~a~i~~ 128 (274)
T TIGR03133 72 ------------------GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQEANAGLIAIAEIMR 128 (274)
T ss_pred ------------------CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----ChhhhHHHHHHHHHHHH
Confidence 999999999999999999987 67899999999994 333333 223456666
Q ss_pred HHHcCC--CCEEEEEcCCCc---CCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2033 NLRTYK--QPVFVYIPMMAE---LRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2033 al~~~~--vP~i~~I~~~ge---~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
++..++ +|+|++|. |. ++|++|.+.. .|+ ++|.|++++++.+|+-+
T Consensus 129 ~~~~ls~~vP~Isvv~--Gp~gc~GG~a~~a~l----~D~--vim~~~a~i~~aGP~VI 179 (274)
T TIGR03133 129 AILDARAAVPVIGVIG--GRVGCFGGMGIAAGL----CSY--LIMTEEGRLGLSGPEVI 179 (274)
T ss_pred HHHHHhCCCCEEEEEe--CCCCcchHHHHHHhc----CCE--EEEeCCcEEeccCHHHH
Confidence 655544 99999999 44 4555655444 477 88899999999999765
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=153.46 Aligned_cols=124 Identities=13% Similarity=0.250 Sum_probs=86.7
Q ss_pred eEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecc-cceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCC
Q 000086 628 SYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEA-AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDG 706 (2304)
Q Consensus 628 ~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~-~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~G 706 (2304)
.|+|++||+.|+|+++.+.++.-... ....+...... ..-.-........-....++..|+|||+|+|++|+|++|
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAA---PAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAVG 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCcccccc---ccCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCCC
Confidence 58999999999999988753310000 00000000000 000000000000000223467899999999999999999
Q ss_pred CEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 707 SHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 707 d~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
|.|++||+|++||+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 99999999999999999999999999999988 9999999999999987
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=170.92 Aligned_cols=148 Identities=22% Similarity=0.235 Sum_probs=118.2
Q ss_pred CCChHHHhhcccCCCCCcccccccCCCceecc-c-------C---------CCCeEEEEEEEECCeEEEEEEEecceeec
Q 000086 1896 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETL-E-------G---------WARTVVTGRARLGGIPVGIVAVETQTVMQ 1958 (2304)
Q Consensus 1896 ~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~-~-------~---------~a~~vVtG~arl~G~pVGViA~e~~~~~~ 1958 (2304)
...+|+.|+. |||+|||.|+. + . .+++||||+|+|+|+||.|+|+|++++
T Consensus 14 ~ltARERi~~-----------LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~-- 80 (301)
T PRK07189 14 EASARERAAA-----------LLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFM-- 80 (301)
T ss_pred eCCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCcc--
Confidence 4578999986 89999999992 1 1 257999999999999999999998876
Q ss_pred cccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccC-----CCEEEEecCCCCCCchhhhhhhH--HHHHHHHH
Q 000086 1959 VIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE-----LPLFILANWRGFSGGQRDLFEGI--LQAGSTIV 2031 (2304)
Q Consensus 1959 ~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~-----lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv 2031 (2304)
||++++.++.|++++++.|.+.+ +|+|+|.|+.|.. ++++. +-.+++++
T Consensus 81 -------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaR-----lqEg~~~L~~~a~i~ 136 (301)
T PRK07189 81 -------------------GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVR-----LQEANAGLAAIAEIM 136 (301)
T ss_pred -------------------CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcC-----ccchHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999943 33333 33556777
Q ss_pred HHHHcCC--CCEEEEEcCC-CcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2032 ENLRTYK--QPVFVYIPMM-AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2032 ~al~~~~--vP~i~~I~~~-ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.++..++ +|+|++|... |+.+|++|.+.. .|+ ++|.++|++++.+|+-+
T Consensus 137 ~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l----~D~--iIm~~~a~iglaGP~VI 188 (301)
T PRK07189 137 RAIVDLRAAVPVIGLIGGRVGCFGGMGIAAAL----CSY--LIVSEEGRLGLSGPEVI 188 (301)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhc----CCE--EEEECCcEEeccCHHHH
Confidence 6655544 9999999921 155556665433 477 88889999999999655
|
|
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=161.30 Aligned_cols=185 Identities=21% Similarity=0.320 Sum_probs=108.3
Q ss_pred hcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCcCeEE
Q 000086 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRK 248 (2304)
Q Consensus 170 lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~ 248 (2304)
+.||..+.++++++|||+|++.. +.+.+++.++.+++ +||+|+||..|++|+||.+
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~-----------------------~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~ 57 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRV-----------------------TNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFL 57 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEE-----------------------ESSHHHHHHHHHHH--SSEEEE-SB-------EE
T ss_pred CCCHHHHHHHHHHCCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEE
Confidence 36999999999999999999766 67899999999999 8999999999999999999
Q ss_pred ECCHHHHHHHHHHHHhhCCCCcEEEEEecccc--ceeeEEEEEcCCCCEEEeeccccc-cccccceEEEeCCCCCCCHHH
Q 000086 249 VHNDDEVRALFKQVQGEVPGSPIFIMKVASQS--RHLEVQLLCDQYGNVAALHSRDCS-VQRRHQKIIEEGPITVAPLET 325 (2304)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~--reieVqvl~D~~G~vi~l~~RdcS-vqrr~qKiieeaPa~~l~~e~ 325 (2304)
+++.+++...++..... ..++++|+|++.. +++.|.++++ +++....|.-. ...|+.- -..+. .-+.++
T Consensus 58 i~~~~~~~~~l~~~~~~--~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r~~~~~d~r~n~-~~g~~--~~~~~l 129 (190)
T PF08443_consen 58 INSPDELESLLDAFKRL--ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRRSSPEGDFRTNL-SRGGK--VEPYDL 129 (190)
T ss_dssp EESHCHHHHHHH-------TTT-EEEE----SS---EEEEEETT---EEEEEEE---------------------EE---
T ss_pred ecCHHHHHHHHHHHHhc--cCcceEeccccCCCCcEEEEEEECC---EEEEEEEEecCcccchhhh-ccCce--EEEecC
Confidence 99999999988765422 4688999999865 4888888874 45554433211 1111110 00010 011233
Q ss_pred HHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHH
Q 000086 326 VKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 326 ~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~i 390 (2304)
-+++.+.|.++++++|. ..+.||++-+ ++++||+|+|+.++-. .+|..+|+|+....+..
T Consensus 130 ~~e~~~~a~~~~~~lgl-~~~giDi~~~--~~~~~v~EvN~~~~~~--~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 130 PEEIKELALKAARALGL-DFAGIDILDT--NDGPYVLEVNPNPGFR--GIEEATGIDIAEEIAEY 189 (190)
T ss_dssp -HHHHHHHHHHHHHTT--SEEEEEEEEE--TTEEEEEEEETT---T--THHHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CEEEEEEEec--CCCeEEEEecCCchHh--HHHHHHCcCHHHHHHhh
Confidence 46788899999999997 5777996655 6789999999988743 46778999999887753
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=136.73 Aligned_cols=68 Identities=29% Similarity=0.489 Sum_probs=65.5
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
..|+|||+|+|.+|+|++||+|++||+|+++|+|||+++|+||.+|+|.++ +++|+.|.+|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999988 99999999999999874
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.3e-14 Score=180.32 Aligned_cols=124 Identities=18% Similarity=0.358 Sum_probs=92.4
Q ss_pred eEEEeeCCeEEEEEEEEecC---C--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEE
Q 000086 628 SYTLRMNESEIEAEIHTLRD---G--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYL 702 (2304)
Q Consensus 628 ~y~l~ing~~~~V~v~~l~d---g--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~ 702 (2304)
.|.+..+|+.+.|++...++ | .+.+.+||..+.+.+.+....... .........+++.|.|||||+|++|+
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~----~~~~~a~~~~~~~v~apm~G~V~~~~ 540 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKI----ERSSVNNKIGPGDITVAIPGSIIAIH 540 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccc----cccccCCCCCCCeEecCcceEEEEEE
Confidence 34555555555555543221 2 345667887776665543211111 11111234567899999999999999
Q ss_pred ccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
|++||.|++||+|++||+|||+++|.||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 541 V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 541 VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 999999999999999999999999999999999988 99999999999999996
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=176.75 Aligned_cols=122 Identities=17% Similarity=0.348 Sum_probs=96.8
Q ss_pred eeeEeecCeEEEEEEEeeCC---CeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceecccc
Q 000086 607 QVSLNIEGSKYRIDMVRRGP---GSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQN 683 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~---~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~ 683 (2304)
.+++.++|++|.+++...++ ..|.+.+||+..+|.++..+..... ...+
T Consensus 467 ~~~v~i~Gk~~~i~~~~~g~~~~r~~~~~~ng~~~~v~v~d~~~~~~~----------------------------~~~~ 518 (592)
T PRK09282 467 EFKVEVDGEKYEVKIEGVKAEGKRPFYLRVDGMPEEVVVEPLKEIVVG----------------------------GRPR 518 (592)
T ss_pred EEEEEECCEEEEEEEeeccCCCcceEEEEecCceeeeeccCccccccc----------------------------ccCC
Confidence 45666677777777776654 4566666666666665433221100 0245
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
..++..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|+++ +++|+.|.+|++|++|++
T Consensus 519 ~~~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 519 ASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCCceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 6678899999999999999999999999999999999999999999999999888 999999999999999864
|
|
| >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-13 Score=130.80 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=65.8
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+.|.||+||+|++|.+++||+|++||+|+++|+|||++++.||.+|+|.++ +++|+.|.+|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 579999999999999999999999999999999999999999999999888 99999999999999985
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.4e-13 Score=155.77 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=119.0
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEec--------cccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCch
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVA 1694 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~--------t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~ 1694 (2304)
+.+||+++..+ +||+|+|++||. +..+|++.+...+|..|++++|.+.++|+|+|.+++|++++..
T Consensus 42 d~~vItG~gri------~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~ 115 (256)
T PRK12319 42 DGAVVGGIGYL------AGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVG 115 (256)
T ss_pred CCcEEEEEEEE------CCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHh
Confidence 34599999876 999999999865 4689999999999999999999999999999999999999743
Q ss_pred hhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-ccccccccc
Q 000086 1695 EEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAY 1773 (2304)
Q Consensus 1695 e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~iag~~ 1773 (2304)
.+ ..|....+ . +|+. .|+
T Consensus 116 aE---------------~~G~~~~i------a----------------------------------~~~~~~s~------ 134 (256)
T PRK12319 116 AE---------------ERGQGEAI------A----------------------------------RNLMEMSD------ 134 (256)
T ss_pred HH---------------hccHHHHH------H----------------------------------HHHHHHhC------
Confidence 21 02211100 0 1110 011
Q ss_pred ccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccc-----cccccccCcceeecccCceE
Q 000086 1774 SRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVH 1848 (2304)
Q Consensus 1774 s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~v-----y~s~~~lGG~~i~~~nGv~d 1848 (2304)
..+|+||+|+|+|.|||||...++|+++|.+++.+.+.+|...-..+=++. -....++ ++.-+.+.|++|
T Consensus 135 ----~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~-~a~~l~~~g~iD 209 (256)
T PRK12319 135 ----LKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASILWKDGSRATEAAELMKI-TAGELLEMGVVD 209 (256)
T ss_pred ----CCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCC-CHHHHHHCCCCc
Confidence 127999999999999999999999999999999999999987766553321 0011233 445566899999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-+++
T Consensus 210 ~ii~ 213 (256)
T PRK12319 210 KVIP 213 (256)
T ss_pred EecC
Confidence 9985
|
|
| >PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-13 Score=132.91 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=63.5
Q ss_pred eeeeCCCceeEE------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 689 KLVAETPCKLLR------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 689 ~l~APmPGkvv~------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
.|++|++|++.+ |+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 689999999887 99999999999999999999999999999999999999 8899999999999986
|
Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A .... |
| >PRK06748 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=131.86 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=64.6
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcc-ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM-KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM-Km~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|+|||||+|++|+|++||.|++||+|++||+| |+.++|.||.+|+|+.+ +++|+.|..|++|++|+.+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 589999999999999999999999999999996 56679999999999988 9999999999999999643
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=166.32 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=120.5
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCch
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVA 1694 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~--------~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~ 1694 (2304)
+.+||+|+.++ +||+|+|++||+++ .+|+..+...+|..|++++|.+.++|+|+|.|++||+++..
T Consensus 186 D~aIVtGlGRI------dGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~ 259 (762)
T PLN03229 186 DPAIVTGIGTI------DGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLK 259 (762)
T ss_pred CCCeEEEEEEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCch
Confidence 34799999886 99999999999974 89999999999999999999999999999999999999844
Q ss_pred hhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc--cccccccc
Q 000086 1695 EEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT--GSGAIAGA 1772 (2304)
Q Consensus 1695 e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~--~SG~iag~ 1772 (2304)
.+.. |.+. .. .+|+. .++
T Consensus 260 AEe~---------------Gq~~------aI----------------------------------Arnl~amasl----- 279 (762)
T PLN03229 260 SEEL---------------GQGE------AI----------------------------------AHNLRTMFGL----- 279 (762)
T ss_pred hHHH---------------hHHH------HH----------------------------------HHHHHHHhCC-----
Confidence 2211 1100 00 01111 111
Q ss_pred cccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccc---cccC-cceeecccCceE
Q 000086 1773 YSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLG-GPKIMATNGVVH 1848 (2304)
Q Consensus 1773 ~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~---~~lG-G~~i~~~nGv~d 1848 (2304)
.+|+||+|+|+|.|||||...++|+++|.+++.+++.||..--..+-++.-..+ +.++ +++=+...|++|
T Consensus 280 ------~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD 353 (762)
T PLN03229 280 ------KVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIAD 353 (762)
T ss_pred ------CCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCe
Confidence 279999999999999999999999999999999999999988777655431111 1111 112245799999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-|++
T Consensus 354 ~IIp 357 (762)
T PLN03229 354 GIIP 357 (762)
T ss_pred eecc
Confidence 9886
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=167.32 Aligned_cols=199 Identities=17% Similarity=0.226 Sum_probs=145.8
Q ss_pred CcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHH
Q 000086 1590 DKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAV 1669 (2304)
Q Consensus 1590 ~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra 1669 (2304)
|-++.+..+.++|+ + .|.|+....| .+||++..++ +||+|.|+|||+|+++|++++...+|..|+
T Consensus 278 ~~d~r~~i~~l~D~--~----sf~El~~~~g---~~vVtG~gri------~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~ 342 (512)
T TIGR01117 278 PYDMRDVITAIVDN--G----DYLEVQPYYA---PNIITCFARI------NGQSVGIIANQPKVMAGCLDIDSSDKIARF 342 (512)
T ss_pred CCCHHHHHHHhCCC--C----ceEEeeccCC---CcEEEEEEEE------CCEEEEEEEeccccccCCCCHHHHHHHHHH
Confidence 34455666677776 4 5888776665 5599999876 999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEE
Q 000086 1670 TDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVD 1749 (2304)
Q Consensus 1670 ~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~ 1749 (2304)
+++|.+.++|+|+|.+++|+..+...|-...++ ...++ + .
T Consensus 343 i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~---------------------~~a~~---~-----~----------- 382 (512)
T TIGR01117 343 IRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIR---------------------HGAKV---L-----Y----------- 382 (512)
T ss_pred HHHHHHcCCCEEEEEeCcCccccHHHHHHHHHH---------------------HHHHH---H-----H-----------
Confidence 999999999999999999996653322100000 00000 0 0
Q ss_pred eeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc-----cCEEEEecCcceEecChHHHHHhh
Q 000086 1750 SIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL-----GMRCIQRLDQPIILTGFSALNKLL 1824 (2304)
Q Consensus 1750 ~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l-----gd~~I~~~~~~i~ltG~~al~~~l 1824 (2304)
+++. ..+|+||+|+|++.|+ ||+++. +|++++.+++.+++.||...-+++
T Consensus 383 ----------------------a~~~--~~vP~isvi~g~~~Gg-a~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~i~ 437 (512)
T TIGR01117 383 ----------------------AYSE--ATVPKVTIITRKAYGG-AYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANII 437 (512)
T ss_pred ----------------------HHHh--CCCCEEEEEcCCCchH-HHHHhccccCCCCEEEEcCCCeEeecCHHHHHHHH
Confidence 0011 1379999999999776 788886 899999999999999998754433
Q ss_pred -cccccc--------------cccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1825 -GREVYS--------------SHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1825 -G~~vy~--------------s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
.+++.. -.++++.+......|.+|-|+ |-.+--..+.+||..+-
T Consensus 438 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI-~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 438 FRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI-EPKQTRPKIVNALAMLE 496 (512)
T ss_pred hhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE-ChHHHHHHHHHHHHHHh
Confidence 222110 012355666667899999999 57888888888888764
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=154.05 Aligned_cols=218 Identities=10% Similarity=0.045 Sum_probs=141.6
Q ss_pred CCCEEEeC--CCcCCCCCchHHHH-----------HHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccC
Q 000086 131 RVDAVWPG--WGHASEIPELPDTL-----------STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKI 197 (2304)
Q Consensus 131 ~vDaV~pG--~G~~SEn~~la~~l-----------~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~ 197 (2304)
.+|+||+- +.+..+ +...+ +..|+.++ +++++++.+.||..+..+++ +++|++..
T Consensus 79 ~~d~V~~R~~~~~~~~---~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v----- 146 (338)
T PRK12458 79 GFDVIFLRANPPLDPL---ARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHI----- 146 (338)
T ss_pred hCCEEEEeCCCCCChH---HHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEE-----
Confidence 47999984 333222 22222 34687776 99999999999999987666 66777544
Q ss_pred CCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHH--HHHHHHHHHhhCCCCcEEEE
Q 000086 198 PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDE--VRALFKQVQGEVPGSPIFIM 274 (2304)
Q Consensus 198 ~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eE--L~~a~~~~~~e~~~~~i~VE 274 (2304)
..+.+++.++.++.|+| +|+||..|.||+||+++++.++ +...++.... ..++++|
T Consensus 147 ------------------~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~---~~~~ivQ 205 (338)
T PRK12458 147 ------------------SRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG---DGYVIAQ 205 (338)
T ss_pred ------------------eCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh---CCCEEEE
Confidence 45678888888888765 9999999999999999987664 5555554432 3589999
Q ss_pred EeccccceeeEEEEEcCCCCEE------Eeecccccc-ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHC---Ccee
Q 000086 275 KVASQSRHLEVQLLCDQYGNVA------ALHSRDCSV-QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVG 344 (2304)
Q Consensus 275 eyI~g~reieVqvl~D~~G~vi------~l~~RdcSv-qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakal---Gy~G 344 (2304)
+|+++..+.++.++.= .|+++ +...|...- ..|.. +..+ ......++-+++.+.|.+++..+ |+ .
T Consensus 206 eyI~~~~~gDiRv~vv-~g~~v~~~g~~~a~~R~~~~~d~RsN--~~~G-g~~~~~~l~~~~~~ia~~~~~~l~~~GL-~ 280 (338)
T PRK12458 206 EYLPGAEEGDVRILLL-NGEPLERDGHYAAMRRVPAGGDVRSN--VHAG-GSVVKHTLTKEELELCEAIRPKLVRDGL-F 280 (338)
T ss_pred EcccCCCCCCEEEEEE-CCEEEeeccceeEEEEecCCCCeeec--ccCC-CcccCcCCCHHHHHHHHHHHHHHhhcCC-e
Confidence 9998644344444421 24566 433332100 00000 0000 01111223355666677776655 54 3
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
.+.||++- .+++|||++-.+..+-.+.++|+|+....++...
T Consensus 281 ~~gVDli~------~~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~ 322 (338)
T PRK12458 281 FVGLDIVG------DKLVEVNVFSPGGLTRINKLNKIDFVEDIIEALE 322 (338)
T ss_pred EEeEEEEC------CEEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHH
Confidence 56688872 2689999998877777788899999999988653
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=155.91 Aligned_cols=169 Identities=18% Similarity=0.140 Sum_probs=125.3
Q ss_pred ccccccCCC-CCceEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEE
Q 000086 1612 LVLVERSPG-LNNIGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIY 1682 (2304)
Q Consensus 1612 l~e~~r~~g-~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~ 1682 (2304)
|.|+...-+ ..+.+||+|+.++ +||+|+|++||.+ ..+|++++...+|..|++++|.+.++|+|+
T Consensus 86 f~El~gd~~~~dd~avV~Glgri------~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIIt 159 (322)
T CHL00198 86 WIELHGDRGGSDDPALVGGIGKI------NGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILT 159 (322)
T ss_pred HHHHccccccCCCCceEEEEEEE------CCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 555554432 3457899999886 9999999999995 589999999999999999999999999999
Q ss_pred EEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccc
Q 000086 1683 LAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVEN 1762 (2304)
Q Consensus 1683 l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~ 1762 (2304)
|.|++||+++...+- .|.... . .+|
T Consensus 160 lvDTpGA~~G~~AE~---------------~G~~~a------i----------------------------------ar~ 184 (322)
T CHL00198 160 FIDTPGAWAGVKAEK---------------LGQGEA------I----------------------------------AVN 184 (322)
T ss_pred EEeCCCcCcCHHHHH---------------HhHHHH------H----------------------------------HHH
Confidence 999999999843211 111000 0 011
Q ss_pred cc--cccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccc---ccccC-
Q 000086 1763 LT--GSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG- 1836 (2304)
Q Consensus 1763 l~--~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s---~~~lG- 1836 (2304)
+. .++ .+|+||+|+|++.|||||...++|+++|.+++.+.+.+|..--..+-++.-.. .+.++
T Consensus 185 l~~~a~~-----------~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~a~~aA~~~~i 253 (322)
T CHL00198 185 LREMFSF-----------EVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKKSLDAAEALKI 253 (322)
T ss_pred HHHHHcC-----------CCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhhHHHHHHHcCC
Confidence 10 112 27999999999999999999999999999999999999987777665543000 01111
Q ss_pred cceeecccCceEEEec
Q 000086 1837 GPKIMATNGVVHLTVS 1852 (2304)
Q Consensus 1837 G~~i~~~nGv~d~~v~ 1852 (2304)
+++=+.+.|++|-+++
T Consensus 254 ta~dL~~~giiD~ii~ 269 (322)
T CHL00198 254 TSEDLKVLGIIDEIIP 269 (322)
T ss_pred CHHHHHhCCCCeEecc
Confidence 1122357999999985
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=163.25 Aligned_cols=148 Identities=23% Similarity=0.204 Sum_probs=117.3
Q ss_pred CChHHHhhcccCCCCCcccccccCCCceecccC-------------CCCeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1897 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG-------------WARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1897 yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~-------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
..+|+.|+. |||+|||.|+... .+.+||||+|+|+|+||.|+++|+++.
T Consensus 8 ~~areRi~~-----------L~D~gSF~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t~~------- 69 (493)
T PF01039_consen 8 LTARERIDL-----------LLDPGSFRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFTVL------- 69 (493)
T ss_dssp EEHHHHHHH-----------HSGTTEBEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETTSG-------
T ss_pred cCHHHHHHH-----------hcCCCCCcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEecccee-------
Confidence 467888886 8999999998532 467999999999999999999998766
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHH--HHHHHHHHHHHcC--CC
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLRTY--KQ 2039 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~~~--~v 2039 (2304)
||++++..++|+.++++.|.+.++|+|.|.|+.|. .+ .|++++. ...++++.+++.+ .+
T Consensus 70 --------------gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa-~~--r~~eg~~~l~~~g~i~~~~~~~~~~i 132 (493)
T PF01039_consen 70 --------------GGSVGEVHGEKIARAIELALENGLPLVYLVDSGGA-FL--RMQEGVESLMGMGRIFRAIARLSGGI 132 (493)
T ss_dssp --------------GGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSB-CG--GGGGHHHHHHHHHHHHHHHHHHHTTS
T ss_pred --------------cCCCCcccceeeehHHHHHHHcCCCcEEecccccc-cc--ccchhhhhhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999996 33 4444443 3455555554332 79
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
|+|++|. +.+.+||||.+.-+ |+ +++.++ +++++.+|.-+
T Consensus 133 P~I~vv~-G~~~Gg~A~~~~~~----d~--~i~~~~~a~i~l~GP~vv 173 (493)
T PF01039_consen 133 PQISVVT-GPCTGGGAYLAALS----DF--VIMVKGTARIFLAGPRVV 173 (493)
T ss_dssp -EEEEEE-SEEEGGGGHHHHHS----SE--EEEETTTCEEESSTHHHH
T ss_pred CeEEEEc-cccccchhhccccc----Cc--cccCccceEEEecccccc
Confidence 9999999 45555588876653 66 777776 99999999654
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=163.53 Aligned_cols=198 Identities=18% Similarity=0.143 Sum_probs=142.3
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCC
Q 000086 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWG 240 (2304)
Q Consensus 162 Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~G 240 (2304)
.+..++..|.||..+|++++++|||+|+|.. +.+.+++.+....+ ||||||||..|
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~-----------------------~~~~~~a~~~~~~~~g~PVVVKP~~g 521 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGDE-----------------------FSSQALALEAFSLFENKAIVVKPKST 521 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCC
Confidence 5778899999999999999999999999765 56677777666666 79999999999
Q ss_pred CCCcCeEEECC---HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeecccc---------ccc--
Q 000086 241 GGGKGIRKVHN---DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDC---------SVQ-- 306 (2304)
Q Consensus 241 gGGkGIr~V~s---~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rdc---------Svq-- 306 (2304)
++|+||.++.+ .+++.+++..+... +..++||+|++| +|+.|-|+.+ ++++...|.. +++
T Consensus 522 ~~G~GVsi~~~~~~~eel~~Al~~A~~~--~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eL 595 (737)
T TIGR01435 522 NYGLGITIFKNGFTLEDFQEALNIAFSE--DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVREL 595 (737)
T ss_pred CCcCCeEEecCcCCHHHHHHHHHHHHhc--CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHH
Confidence 99999999876 88999999877644 467999999986 8999988864 3444332221 110
Q ss_pred --------cc---cc----eEE---------------Ee-------------------CCCCCCCHHHHHHHHHHHHHHH
Q 000086 307 --------RR---HQ----KII---------------EE-------------------GPITVAPLETVKKLEQAARRLA 337 (2304)
Q Consensus 307 --------rr---~q----Kii---------------ee-------------------aPa~~l~~e~~~~m~e~A~rla 337 (2304)
+| |. ||. +. +-+..+++++.+...+.|++++
T Consensus 596 I~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa 675 (737)
T TIGR01435 596 VAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIA 675 (737)
T ss_pred HHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHH
Confidence 01 11 110 00 1122355677889999999999
Q ss_pred HHCCceeeeEEEEEEEccC-------CcEEEEEeccCCCCC-cceehhhhcCCHHHHHHH
Q 000086 338 KCVNYVGAATVEYLYSMET-------GEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 338 kalGy~Ga~tVEfl~d~~~-------g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~ 389 (2304)
+++|.. .+.||++...-+ ..+.|||+|++++-. |..--.-.+-|+....+.
T Consensus 676 ~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild 734 (737)
T TIGR01435 676 TAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIK 734 (737)
T ss_pred HhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHH
Confidence 999997 888999985211 236799999999864 322222345566655554
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-12 Score=168.66 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=84.6
Q ss_pred CCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEcc
Q 000086 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2304)
Q Consensus 625 ~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~ 704 (2304)
+...|++.+||+.++|.|...+. ........ . .... + ........+++.|.|||||+|++|+|+
T Consensus 471 g~~~~~~~vnG~~~~V~v~d~~~---~~~~~~~~--~---~~~~-------~-~~~~a~~~~~~~v~ap~~G~v~~~~V~ 534 (582)
T TIGR01108 471 ASGSYTVEVEGKAFVVKVSPGGD---VSQITASA--P---ANTS-------G-GTVAAKAGAGTPVTAPIAGSIVKVKVS 534 (582)
T ss_pred CceEEEEEECCEEEEEEEcCCcc---cccccccc--c---cccc-------c-ccccCCCCCCCeEeCCccEEEEEEEeC
Confidence 45679999999999999864321 11100000 0 0000 0 011123467889999999999999999
Q ss_pred CCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000086 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2304)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~L 751 (2304)
+||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|+.|++|
T Consensus 535 ~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 535 EGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 9999999999999999999999999999999988 9999999999975
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=161.90 Aligned_cols=250 Identities=16% Similarity=0.111 Sum_probs=164.9
Q ss_pred cEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHH-------CCCeEECCCHHHHHHhcCHHH
Q 000086 103 DQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLST-------KGIIFLGPPATSMAALGDKIG 175 (2304)
Q Consensus 103 De~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~-------~GI~fiGPs~eam~~lgDK~~ 175 (2304)
+..+.++|..+. -.+...|++.|++.++...+-.-+ + .+...... .+...-..+..++..+.||..
T Consensus 419 ~~~~~L~g~~~~--~~sT~~li~aA~~rGi~v~~ld~~---~--~~l~l~~g~~~~~v~~~~~t~~~s~~s~~~~~DK~~ 491 (752)
T PRK02471 419 ERPYALKGYEDM--ELSTQILLFDAIQRGIQVEILDEQ---D--QFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVV 491 (752)
T ss_pred cCccccCCcccC--ChhHHHHHHHHHHCCCeEEEEcCC---c--ceehhccCCCeeEEEeccccCCCHHHHHHHhhCHHH
Confidence 334556665542 234678999999999887764311 0 11111111 111122245557888899999
Q ss_pred HHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc-cCCcEEEeecCCCCCcCeEEE---CC
Q 000086 176 SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV-VGYPAMIKASWGGGGKGIRKV---HN 251 (2304)
Q Consensus 176 sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~-IGyPVVIKPs~GgGGkGIr~V---~s 251 (2304)
++++++++|||+|++.. +.+.+++.+...+ .||||||||..|++|+||.++ ++
T Consensus 492 tk~lL~~~GIpvP~~~~-----------------------~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~ 548 (752)
T PRK02471 492 TKKILAEAGFPVPAGDE-----------------------FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPAS 548 (752)
T ss_pred HHHHHHHCCcCCCCEEE-----------------------EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCC
Confidence 99999999999999765 5677888777766 489999999999999999986 56
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeecccc---------ccc----------cc---c
Q 000086 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDC---------SVQ----------RR---H 309 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rdc---------Svq----------rr---~ 309 (2304)
.+++.+++..+... +..++||||++| +++.|-++. |+++....|.. +++ +| |
T Consensus 549 ~eel~~A~~~a~~~--~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~ 622 (752)
T PRK02471 549 LEDYEKALEIAFRE--DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDH 622 (752)
T ss_pred HHHHHHHHHHHHhc--CCcEEEEecccC-CEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcc
Confidence 89999999887643 467999999976 899998874 34554443322 110 00 1
Q ss_pred ceE---EE--e----------------------------------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE
Q 000086 310 QKI---IE--E----------------------------------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEY 350 (2304)
Q Consensus 310 qKi---ie--e----------------------------------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf 350 (2304)
.+. |. + +-+..++..+.+...+.|+++++++|.. .+.||+
T Consensus 623 ~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDi 701 (752)
T PRK02471 623 RTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDL 701 (752)
T ss_pred cccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEE
Confidence 100 00 0 0122355678889999999999999987 444999
Q ss_pred EEEccC-----C--cEEEEEeccCCCCC-cceehhhhcCCHHHHHHH
Q 000086 351 LYSMET-----G--EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 351 l~d~~~-----g--~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~ 389 (2304)
+...-+ . ++.|||+|++++-. |..--.-...|+.+..+.
T Consensus 702 i~~di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d 748 (752)
T PRK02471 702 IIPDLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILD 748 (752)
T ss_pred EeCCCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHH
Confidence 986311 2 68899999999854 322111234455555554
|
|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=139.72 Aligned_cols=191 Identities=18% Similarity=0.156 Sum_probs=137.7
Q ss_pred HHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc
Q 000086 149 PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV 228 (2304)
Q Consensus 149 a~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~ 228 (2304)
-+..++. ...+|+++++++.|.||+.++..++.+ |++|+++. ...
T Consensus 92 tri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e---------------------------------~~~ 136 (307)
T COG1821 92 TRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE---------------------------------WAE 136 (307)
T ss_pred HHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc---------------------------------ccc
Confidence 3555555 667899999999999999999999999 99998653 001
Q ss_pred cCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc
Q 000086 229 VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR 308 (2304)
Q Consensus 229 IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr 308 (2304)
.+--.||||.+|.||.|+....+..++ .++|+||+| .|++|.+.....-.++++...+.-+ .
T Consensus 137 ~~~k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEfIeG-~~lSVSL~~GEkv~pLsvNrQfi~~--~ 198 (307)
T COG1821 137 EPKKYVIKPADGCGGEGILFGRDFPDI---------------EIAQEFIEG-EHLSVSLSVGEKVLPLSVNRQFIIF--A 198 (307)
T ss_pred CCceEEecccccCCcceeeccCCCcch---------------hhHHHhcCC-cceEEEEecCCccccceechhhhhh--c
Confidence 123479999999999999998887663 477899987 7999994443322333332111111 0
Q ss_pred cceE-EEeCCCCCCCHHHHHHHHHHHHHHHHHCC-ceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHH
Q 000086 309 HQKI-IEEGPITVAPLETVKKLEQAARRLAKCVN-YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAA 386 (2304)
Q Consensus 309 ~qKi-ieeaPa~~l~~e~~~~m~e~A~rlakalG-y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~ 386 (2304)
..++ ...++.+ .+.++.+++.+.|++.++.++ ++|...||+.+. +++|++|||||+.-..--...+++-++.++
T Consensus 199 ~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~TTp~vg~sr~~~~sv~~L 274 (307)
T COG1821 199 GSELVYNGGRTP-IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPTTPTVGLSRVTPESVAEL 274 (307)
T ss_pred cceeeeccCcCC-CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCCcceeeeeccccHHHHHH
Confidence 1111 2234555 566899999999999999995 899999999996 689999999999765433445677777777
Q ss_pred HHHHHcCCCC
Q 000086 387 QVAVGMGIPL 396 (2304)
Q Consensus 387 qL~iA~G~pL 396 (2304)
.+.-..|.-+
T Consensus 275 Ll~~~~g~~~ 284 (307)
T COG1821 275 LLEGPTGKVL 284 (307)
T ss_pred HhcCcccccc
Confidence 7766666543
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.3e-12 Score=164.35 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=87.5
Q ss_pred CCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEcc
Q 000086 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2304)
Q Consensus 625 ~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~ 704 (2304)
+...|.+.+||+.+.|.|...++ -..+...+....... .....+...++..|.|||||+|++|+|+
T Consensus 476 g~~~~~~~vnG~~~~V~v~~~~~-~~~~~~~~~~~~~~~-------------~~~~a~~~~~~~~V~Ap~~G~I~~~~V~ 541 (593)
T PRK14040 476 GSETYTVEVEGKAYVVKVSEGGD-ISQITPAAPAAAPAA-------------AAAAAPAAAAGEPVTAPLAGNIFKVIVT 541 (593)
T ss_pred CCeEEEEEECCEEEEEEECCCCc-ccccccccccccccc-------------ccccccCCCCCceEECCccEEEEEEEeC
Confidence 55678999999999998853210 001111111111000 0000112345678999999999999999
Q ss_pred CCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|.
T Consensus 542 ~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 542 EGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999999999999988 99999999999999873
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=148.11 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=120.9
Q ss_pred CceEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCc
Q 000086 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGV 1693 (2304)
Q Consensus 1622 n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~ 1693 (2304)
.+.+||+++.++ +||+|+|++||.. ..+|+.++...+|..|++++|.+.++|+|+|.+++||+++.
T Consensus 94 dd~aiVtG~ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~ 167 (316)
T TIGR00513 94 DDKAIVGGIARL------DGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGI 167 (316)
T ss_pred CCCceEEEEEEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCH
Confidence 356799999876 9999999999984 68899999999999999999999999999999999999984
Q ss_pred hhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-cccccccc
Q 000086 1694 AEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGA 1772 (2304)
Q Consensus 1694 ~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~iag~ 1772 (2304)
..+-. |... ... +|+. .++
T Consensus 168 ~aE~~---------------G~~~------aia----------------------------------~~l~a~s~----- 187 (316)
T TIGR00513 168 GAEER---------------GQSE------AIA----------------------------------RNLREMAR----- 187 (316)
T ss_pred HHHHH---------------HHHH------HHH----------------------------------HHHHHHHc-----
Confidence 32211 1000 000 1110 000
Q ss_pred cccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccc---ccccC-cceeecccCceE
Q 000086 1773 YSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-GPKIMATNGVVH 1848 (2304)
Q Consensus 1773 ~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s---~~~lG-G~~i~~~nGv~d 1848 (2304)
..+|+||+|+|+|.|||||...++|+++|.+++.+.+.+|..--..+-++.-.. .+.++ +++-+...|++|
T Consensus 188 -----~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~iD 262 (316)
T TIGR00513 188 -----LGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGLID 262 (316)
T ss_pred -----CCCCEEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCCCe
Confidence 127999999999999999999999999999999999999987766655432000 11122 355566899999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-|++
T Consensus 263 ~II~ 266 (316)
T TIGR00513 263 SIIP 266 (316)
T ss_pred Eecc
Confidence 9986
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK07051 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-12 Score=123.54 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=65.5
Q ss_pred CeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 688 ~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
..++||+||++++ ++|++||.|++||+++++|+|||+++|+||.+|+|.++ +++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999888 99999999999999985
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=144.93 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=120.3
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCch
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVA 1694 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~ 1694 (2304)
+.+||+++.++ +||+|+|+|||.+ +.+|++.+...+|..|++++|.+.++|+|+|.+++||+++..
T Consensus 95 d~aiV~G~ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~ 168 (319)
T PRK05724 95 DKAIVGGLARL------NGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIG 168 (319)
T ss_pred CCceEEEEEEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHH
Confidence 45799999887 9999999999994 689999999999999999999999999999999999999843
Q ss_pred hhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-ccccccccc
Q 000086 1695 EEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAY 1773 (2304)
Q Consensus 1695 e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~iag~~ 1773 (2304)
.+- .|... ... .|+. .+.
T Consensus 169 aE~---------------~G~~~------aia----------------------------------~~l~~~a~------ 187 (319)
T PRK05724 169 AEE---------------RGQSE------AIA----------------------------------RNLREMAR------ 187 (319)
T ss_pred HHh---------------ccHHH------HHH----------------------------------HHHHHHhC------
Confidence 220 11100 000 0111 000
Q ss_pred ccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccc-----cccccccCcceeecccCceE
Q 000086 1774 SRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVH 1848 (2304)
Q Consensus 1774 s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~v-----y~s~~~lGG~~i~~~nGv~d 1848 (2304)
..+|+||+|+|++.|||||...++|+++|.+++.+.+.+|..--..+-++. .....++ +++-+...|++|
T Consensus 188 ----~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~~aae~~~i-ta~~l~~~g~iD 262 (319)
T PRK05724 188 ----LKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASKAPEAAEAMKI-TAQDLKELGIID 262 (319)
T ss_pred ----CCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchhHHHHHHHcCC-CHHHHHHCCCce
Confidence 127999999999999999999999999999999999999987666554421 0011233 345567899999
Q ss_pred EEec
Q 000086 1849 LTVS 1852 (2304)
Q Consensus 1849 ~~v~ 1852 (2304)
-|++
T Consensus 263 ~II~ 266 (319)
T PRK05724 263 EIIP 266 (319)
T ss_pred Eecc
Confidence 9985
|
|
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=143.02 Aligned_cols=272 Identities=13% Similarity=0.139 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc-EEEEccCCCCCCCccCHH--HHHHHHHHcCCCEE
Q 000086 59 AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD-QFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAV 135 (2304)
Q Consensus 59 ~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~AD-e~v~vp~~~~~~sY~dvd--~Ii~iA~~~~vDaV 135 (2304)
...+++.++++.|++++ +..+.|......-+ .|. ..+.++.. ...|.... ..+. -...|+|
T Consensus 19 st~~L~~aa~~rG~~v~----------~~~~~~l~~~~~~~-~a~~~~~~~~~~--~~~~~~~~~~~~~~---l~~~D~v 82 (312)
T TIGR01380 19 TTFALMEEAQKRGHELF----------FYEPGDLSVVNGEV-FARARPVRVGPN--KQDWYTLGEKVRLS---LGELDAV 82 (312)
T ss_pred hHHHHHHHHHHcCCEEE----------EEehhheEEECCEE-EEEEEEEEeccC--CcceeecCcccccc---cccCCEE
Confidence 67789999999999986 35555543211100 111 11333211 11121110 1111 1247999
Q ss_pred EeCCC--cCCC---CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 136 WPGWG--HASE---IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 136 ~pG~G--~~SE---n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
++--+ +... ...+.+.++..|+.++ +++.+++.+.||..+..++. |+||+..
T Consensus 83 ~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v------------------ 139 (312)
T TIGR01380 83 LMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLV------------------ 139 (312)
T ss_pred EEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEE------------------
Confidence 97532 2211 1235677778898877 89999999999999888763 7888543
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQL 287 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~i~VEeyI~g--~reieVqv 287 (2304)
..+.+++.++.++.| |+|+||..|+||+|+.++++ ..++....+... .....++++|+|++. ..++.|-+
T Consensus 140 -----~~~~~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-~~~~~~~~vQ~yI~~~~~~D~Rv~v 212 (312)
T TIGR01380 140 -----TRDKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-QRGREPVMAQRYLPEIKEGDKRILL 212 (312)
T ss_pred -----eCCHHHHHHHHHHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-hccCCcEEEEeccccccCCCEEEEE
Confidence 457888889988888 99999999999999999975 333433333322 112358999999974 35777766
Q ss_pred EEcCCCCEEE-eecccccc-ccccc-eE-EEeCCCCCCCHHHHHHHHHHHHHHH---HHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAA-LHSRDCSV-QRRHQ-KI-IEEGPITVAPLETVKKLEQAARRLA---KCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~-l~~RdcSv-qrr~q-Ki-ieeaPa~~l~~e~~~~m~e~A~rla---kalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+. |++++ ...|...- ..|.+ .. -...|.. +++ +..+.|.+++ +.+|. ..+.||++- .+
T Consensus 213 v~---g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~-l~~----e~~~ia~~~~~~~~~~gl-~~agVDiig------~~ 277 (312)
T TIGR01380 213 ID---GEPIGAAVARIPAGGEFRGNLAVGGRGEATE-LSE----RDREICADVAPELKRRGL-LFVGIDVIG------GY 277 (312)
T ss_pred EC---CeEEEEEEEecCCCCCccccccCCceeeccC-CCH----HHHHHHHHHHHHHHhcCC-cEEEEEEeC------CE
Confidence 65 45554 33331110 01100 00 0111222 333 3344444544 55565 355688872 47
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHH
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA 391 (2304)
|+|+|+-=+....-.+.++|+|+....+...
T Consensus 278 v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 278 LTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred EEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 9999986333444455679999999887654
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-11 Score=147.06 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=124.6
Q ss_pred ccccccC-CCCCceEEEEEEEeecCcccCCCcEEEEEEEecccc--------CCCcchHHHHHHHHHHHHHHHcCCCEEE
Q 000086 1612 LVLVERS-PGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK--------AGSFGPREDAFFLAVTDLACAKKLPLIY 1682 (2304)
Q Consensus 1612 l~e~~r~-~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~--------~GS~g~~~~~k~~ra~e~A~~~~lP~I~ 1682 (2304)
+.|+... .+..+.+||+++.++ +||+|+|++||.++. .|++.+...+|..|++++|.+.++|+|+
T Consensus 153 f~EL~Gdr~~~dD~aIVtG~grI------~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVt 226 (431)
T PLN03230 153 WVELHGDRAGFDDPAIVCGIGSM------EGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILT 226 (431)
T ss_pred HhhhcCcccCCCCCCeEEEEEEE------CCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 5555433 334567899999876 999999999998664 4999999999999999999999999999
Q ss_pred EEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccc
Q 000086 1683 LAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVEN 1762 (2304)
Q Consensus 1683 l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~ 1762 (2304)
|.+++||+.+...+-. |.. .... +|
T Consensus 227 LVDTpGA~pG~~AEe~---------------Gqa------~aIA----------------------------------r~ 251 (431)
T PLN03230 227 FVDTPGAYAGIKAEEL---------------GQG------EAIA----------------------------------FN 251 (431)
T ss_pred EEeCCCcCCCHHHHHH---------------hHH------HHHH----------------------------------HH
Confidence 9999999998542211 100 0000 11
Q ss_pred c-ccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccc---ccccC-c
Q 000086 1763 L-TGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-G 1837 (2304)
Q Consensus 1763 l-~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s---~~~lG-G 1837 (2304)
+ ..++ ..+|+||+|+|.+.|||||...+||+++|.+++.+++.||..--..+-++.-.. .+.++ +
T Consensus 252 l~ams~----------l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAealkit 321 (431)
T PLN03230 252 LREMFG----------LRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEALRIT 321 (431)
T ss_pred HHHHhc----------CCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHHcCCC
Confidence 1 0111 137999999999999999999999999999999999999987766654432000 11222 3
Q ss_pred ceeecccCceEEEec
Q 000086 1838 PKIMATNGVVHLTVS 1852 (2304)
Q Consensus 1838 ~~i~~~nGv~d~~v~ 1852 (2304)
++-+.+.|++|-|++
T Consensus 322 A~dL~~~GiID~II~ 336 (431)
T PLN03230 322 AAELVKLGVVDEIVP 336 (431)
T ss_pred HHHHHhCCCCeEecc
Confidence 344568999999985
|
|
| >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=136.21 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=65.8
Q ss_pred CCeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|+|||+|++.+ |+|++||.|++||+|++||+|||+++|.|+.+|+|..+ ++.|+.|+.|++|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 45799999999997 89999999999999999999999999999999999988 99999999999999874
|
The gene name is accB or fabE. |
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=153.57 Aligned_cols=150 Identities=19% Similarity=0.086 Sum_probs=121.0
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc------------CCCCeEEEEEEEECCeEEEEEEEecceeeccccC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE------------GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPA 1962 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pa 1962 (2304)
....+|+.|+. |+|+|||.|+.. ..+.++|||.|+++|++|.|+|+|+++.
T Consensus 41 GkltaReRv~~-----------LlD~Gsf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i~Gr~~~v~a~D~TV~------ 103 (526)
T COG4799 41 GKLTARERVEL-----------LLDPGSFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVK------ 103 (526)
T ss_pred CcCcHHHHHHH-----------HcCCCchhhhhhhhhcccccccccCCCCeeEEeeeeeCCeEEEEEEecCcee------
Confidence 55778999997 789999999843 2356999999999999999999988766
Q ss_pred CCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC--CC
Q 000086 1963 DPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QP 2040 (2304)
Q Consensus 1963 dpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP 2040 (2304)
||+|++-.+.|+.|+.+.|.+.++|+|.|.|+.|...+.. -.-++..+.++...+.++ +|
T Consensus 104 ---------------gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~---v~~l~g~g~iF~~~a~~Sg~IP 165 (526)
T COG4799 104 ---------------GGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEG---VPSLAGYGRIFYRNARASGVIP 165 (526)
T ss_pred ---------------cccccccccchHHHHHHHHHHcCCCEEEEEcccccccccC---ccccccchHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999766544 222334466666655443 89
Q ss_pred EEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2041 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2041 ~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
+|++|+ |.|+.||+|..--+ |+ +++-.+ +.+.+.+|.-+
T Consensus 166 qIsvv~-G~c~gGgaY~pal~----D~--~imv~~~~~mfltGP~~i 205 (526)
T COG4799 166 QISVVM-GPCAGGGAYSPALT----DF--VIMVRDQSYMFLTGPPVI 205 (526)
T ss_pred EEEEEE-ecCccccccccccc----ce--EEEEcCCccEEeeCHHHH
Confidence 999999 67777888865543 66 666665 99999999654
|
|
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=140.41 Aligned_cols=275 Identities=12% Similarity=0.123 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHH--HHHHHHHHcCCCEE
Q 000086 58 MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAV 135 (2304)
Q Consensus 58 ~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd--~Ii~iA~~~~vDaV 135 (2304)
-...++++++++.|++++ +.++.|.......+.--...+.++.. .+.|.... ....+ ...|+|
T Consensus 19 ~st~~l~~aa~~~G~~v~----------~~~~~dl~~~~~~i~~~~~~~~~~~~--~~~w~~~~~~~~~~l---~~~D~v 83 (316)
T PRK05246 19 DSTFAMMLEAQRRGHELF----------YYEPDDLSLRGGEVVARARPLTVRDD--KGDWYELGEEQRLPL---ADFDVI 83 (316)
T ss_pred ChHHHHHHHHHHcCCEEE----------EEehhhcEEECCEEEEEEEEEEeccC--CccceeccccccCcc---ccCCEE
Confidence 345779999999999975 46666654322111100011222221 11221110 01111 237999
Q ss_pred EeCCC--cCCCC---CchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCccc
Q 000086 136 WPGWG--HASEI---PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2304)
Q Consensus 136 ~pG~G--~~SEn---~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~ 210 (2304)
++.-+ +..+. ..+.+.++..|+.++ +++++++.+.||..+.++++ ++|++..
T Consensus 84 ~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~------------------ 140 (316)
T PRK05246 84 LMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLV------------------ 140 (316)
T ss_pred EEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEE------------------
Confidence 97622 11110 124566677898887 88999999999999988765 6777554
Q ss_pred ccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEE
Q 000086 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQL 287 (2304)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~i~VEeyI~g--~reieVqv 287 (2304)
..+.+++.++.++.| |+|+||..|+||+||.++.. ..++....+.+.. ....++++|+|++. ..++.|-+
T Consensus 141 -----~~~~~~~~~~~~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-~~~~~~lvQ~~I~~~~~~D~Rv~v 213 (316)
T PRK05246 141 -----TRDKAEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-HGREPVMAQRYLPEIKEGDKRILL 213 (316)
T ss_pred -----eCCHHHHHHHHHHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-ccCCeEEEEeccccCCCCCEEEEE
Confidence 567888888888888 99999999999999999954 4444444443332 22468999999976 35777776
Q ss_pred EEcCCCCEEE-eecccccc-ccccc--eEEEeCCCCCCCHHHHHHHHHHHHHHH---HHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAA-LHSRDCSV-QRRHQ--KIIEEGPITVAPLETVKKLEQAARRLA---KCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~-l~~RdcSv-qrr~q--KiieeaPa~~l~~e~~~~m~e~A~rla---kalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+. |++++ ...|-..- ..+.. .--...|.. +++ +..+.|.+++ +.+|. ..+.||++. . |
T Consensus 214 v~---g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~-l~~----~~~~ia~~~~~~l~~~gl-~~~GVDli~-----~-~ 278 (316)
T PRK05246 214 VD---GEPVGYALARIPAGGETRGNLAAGGRGEATP-LTE----RDREICAAIGPELKERGL-IFVGIDVIG-----D-Y 278 (316)
T ss_pred EC---CEEhhheeEecCCCCCcccCccCCceEeccC-CCH----HHHHHHHHHHHHHHHhCC-CEEEEEEeC-----C-E
Confidence 63 45665 44442110 00100 000111222 333 3455555555 45554 356788872 1 6
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
++|+|..-.++..-.|.+||+|+....+....
T Consensus 279 l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 279 LTEINVTSPTGIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred EEEEeCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999763444677788999999999887654
|
|
| >PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-11 Score=140.15 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=66.2
Q ss_pred CeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 688 ~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
..|+|||+|++++ |+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|++
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 5799999999999 89999999999999999999999999999999999998 999999999999999863
|
|
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-10 Score=139.64 Aligned_cols=176 Identities=17% Similarity=0.217 Sum_probs=126.7
Q ss_pred CCCeEECCCHHHHHHhcCHHHHHHHHHHCC-------CCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHH---H
Q 000086 155 KGIIFLGPPATSMAALGDKIGSSLIAQAAN-------VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAI---A 224 (2304)
Q Consensus 155 ~GI~fiGPs~eam~~lgDK~~sr~laq~aG-------VPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~---~ 224 (2304)
.|+.++ .++++++.|.||..+..++.++| ||+|++.. +.+.+.+. .
T Consensus 91 pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v-----------------------~~~~~~al~~~~ 146 (328)
T PLN02941 91 PDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLV-----------------------VYDDESSIPDAV 146 (328)
T ss_pred CCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEE-----------------------EcCHHHHHHHHH
Confidence 588877 99999999999999999999999 88998765 44554433 3
Q ss_pred HhhccCCcEEEeecCC---CCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-cceeeEEEEEcCCCCEEEeec
Q 000086 225 SCQVVGYPAMIKASWG---GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-SRHLEVQLLCDQYGNVAALHS 300 (2304)
Q Consensus 225 ~a~~IGyPVVIKPs~G---gGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g-~reieVqvl~D~~G~vi~l~~ 300 (2304)
..+++|||+|+||..| ..|++|.++.++++|... +.|+++||||.. ++-+-|-+++|. + ....
T Consensus 147 ~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l---------~~p~~lQEfVnh~g~d~RVfVvGd~---v-~~~~ 213 (328)
T PLN02941 147 ALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL---------EPPLVLQEFVNHGGVLFKVYVVGDY---V-KCVR 213 (328)
T ss_pred HHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc---------CCcEEEEEecCCCCEEEEEEEECCE---E-EEEE
Confidence 4568999999999999 889999999999988861 358999999954 577888888764 2 2222
Q ss_pred cccccc-cc-c-ceEEEe-------------CC-CC-------CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 301 RDCSVQ-RR-H-QKIIEE-------------GP-IT-------VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 301 RdcSvq-rr-~-qKiiee-------------aP-a~-------~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
| .|.. .+ . .....+ +. .. .......++|++.|.++.+++|. +.+.||++.+.++
T Consensus 214 R-~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~ 291 (328)
T PLN02941 214 R-FSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGT 291 (328)
T ss_pred e-cCCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCC
Confidence 2 1220 00 0 000000 00 00 11112345799999999999997 6778999998533
Q ss_pred -CcEEEEEeccCCC
Q 000086 357 -GEYYFLELNPRLQ 369 (2304)
Q Consensus 357 -g~~yfLEINpRlq 369 (2304)
++++++|||.-++
T Consensus 292 ~~~~~VidVN~fP~ 305 (328)
T PLN02941 292 GDRYYVIDINYFPG 305 (328)
T ss_pred CCceEEEEecCCCc
Confidence 4799999999775
|
|
| >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-11 Score=130.51 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCeeeeCCCceeEE-------EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~-------~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|+|||+|++.. |+|++||.|++||+|+.||+|||.++|+||.+|+|..+ ++.|+.|..|++|++|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 45799999999998 89999999999999999999999999999999999988 99999999999999874
|
|
| >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=109.08 Aligned_cols=66 Identities=30% Similarity=0.569 Sum_probs=63.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
+++||++|+|.+|++++|+.|++||+++.+|+|||..+|+||.+|+|..+ +++|+.|.+|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47899999999999999999999999999999999999999999999988 9999999999999875
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. |
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=130.27 Aligned_cols=199 Identities=16% Similarity=0.122 Sum_probs=119.9
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCC-cEEEeecCC
Q 000086 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASWG 240 (2304)
Q Consensus 162 Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~G 240 (2304)
++.+....+.||..+..+++++|||+|++.... ..-.+.+++.+++. ++ |||+||..|
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~-------------------s~~~~~~~l~~~~~--~~~~VVVKPl~G 85 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELYGVI-------------------HNQAEVKTIHNIVK--DHPDFVIKPAQG 85 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEEEec-------------------CchhhHHHHHHHHc--cCCCEEEEECCC
Confidence 666777889999999999999999999965400 00123444555544 45 699999999
Q ss_pred CCCcCeEEECCHHH---------------HHHHHHH----HHhhC-CCCcEEEEEecccc-----------ceeeEEEEE
Q 000086 241 GGGKGIRKVHNDDE---------------VRALFKQ----VQGEV-PGSPIFIMKVASQS-----------RHLEVQLLC 289 (2304)
Q Consensus 241 gGGkGIr~V~s~eE---------------L~~a~~~----~~~e~-~~~~i~VEeyI~g~-----------reieVqvl~ 289 (2304)
++|+||.++++.++ +...... +.... +...+++|+++... +.+.|-++.
T Consensus 86 s~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~ 165 (317)
T TIGR02291 86 SGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFK 165 (317)
T ss_pred CCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEEC
Confidence 99999999976543 3333332 21111 12235665554332 345555554
Q ss_pred cCCCCEEEeecccccc---ccc---cce--EE-------------------EeCCC-----CCCCHHHHHHHHHHHHHHH
Q 000086 290 DQYGNVAALHSRDCSV---QRR---HQK--II-------------------EEGPI-----TVAPLETVKKLEQAARRLA 337 (2304)
Q Consensus 290 D~~G~vi~l~~RdcSv---qrr---~qK--ii-------------------eeaPa-----~~l~~e~~~~m~e~A~rla 337 (2304)
+ ..+.-.-| ++. ..+ |+. .. +.-|. ..+.....+++.+.|.+++
T Consensus 166 ~---~~vaa~~R-~~~~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~ 241 (317)
T TIGR02291 166 G---YPVMAMMR-LPTRASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCW 241 (317)
T ss_pred C---EEEEEEEE-ccCccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHH
Confidence 3 23322222 111 001 110 00 00111 1122356788999999999
Q ss_pred HHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHH
Q 000086 338 KCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQV 388 (2304)
Q Consensus 338 kalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL 388 (2304)
+++|. |...+|+++++ ++++++||+|+.++-+ |..-...|++-.-..+
T Consensus 242 ~~~g~-~~~GvDii~~~-~~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~ 289 (317)
T TIGR02291 242 ELTGL-GYMGVDMVLDK-EEGPLVLELNARPGLA-IQIANGAGLLPRLKHI 289 (317)
T ss_pred HhcCC-CeEEEEEEEeC-CCCEEEEEeCCCCCCC-HHHHHHCCCcHHHHHH
Confidence 99997 99999999984 5789999999998865 2222334544433333
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-10 Score=136.87 Aligned_cols=161 Identities=21% Similarity=0.249 Sum_probs=119.2
Q ss_pred CCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhh
Q 000086 1618 SPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1697 (2304)
Q Consensus 1618 ~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v 1697 (2304)
.++..+. +|+|..+| +|++|-+++||+.|++|+++...+.|..|.+|+|.+.+||+|.+.+.+| +|+ +.-
T Consensus 332 ~~~y~~t-lvtGfarl------nG~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~G-fm~--g~~ 401 (536)
T KOG0540|consen 332 KPGYGDT-LVTGFARL------NGRTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQRNIPLIFLQNITG-FMV--GRA 401 (536)
T ss_pred ccccccc-eeeeeeeE------CCEEEEEeccCchhcccccchhhhhhhHHHHHHHHhcCCcEEEEEccCC-ccc--cch
Confidence 3555555 78888877 9999999999999999999999999999999999999999999999988 998 555
Q ss_pred hhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccccc
Q 000086 1698 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAY 1777 (2304)
Q Consensus 1698 ~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay 1777 (2304)
..+++|+ ..|-+-+ +.-|-
T Consensus 402 ~e~~gIa-------K~gAklv------------------------------------------------------~a~a~ 420 (536)
T KOG0540|consen 402 AEAGGIA-------KHGAKLV------------------------------------------------------YAVAC 420 (536)
T ss_pred hhhhchh-------hhhhhhh------------------------------------------------------hhhhh
Confidence 5554444 1111111 22233
Q ss_pred ccceEEEEEcCcccch-hh--hhhcccCEEEEecCcceEecCh-H---HHHHhh-------cccccccccccCcceeecc
Q 000086 1778 KETFTLTYVTGRTVGI-GA--YLARLGMRCIQRLDQPIILTGF-S---ALNKLL-------GREVYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1778 ~~iptis~vtg~t~G~-gA--yl~~lgd~~I~~~~~~i~ltG~-~---al~~~l-------G~~vy~s~~~lGG~~i~~~ 1843 (2304)
+.+|.||++||+|+|| -| ..+.++|++++.|++.|.+.|. + +|.+.. +.+. -+-||-+=.-..
T Consensus 421 akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~---~E~f~npy~a~~ 497 (536)
T KOG0540|consen 421 AKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGKQAANVIFQITLEKAVALKAPY---IEKFGNPYYAAA 497 (536)
T ss_pred ccCceEEEEecCccCCcccccccccCCceeEEcccceeeeccccchhhhhhhhhhhhhhhhcchH---HHHhcCccHHHH
Confidence 4589999999999994 12 4577899999999999999998 6 454542 2222 233444444456
Q ss_pred cCceEEEec
Q 000086 1844 NGVVHLTVS 1852 (2304)
Q Consensus 1844 nGv~d~~v~ 1852 (2304)
.|..|-+++
T Consensus 498 Rg~~D~II~ 506 (536)
T KOG0540|consen 498 RGWDDGIID 506 (536)
T ss_pred hhccccccC
Confidence 788887774
|
|
| >COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-08 Score=115.03 Aligned_cols=277 Identities=13% Similarity=0.136 Sum_probs=178.7
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.++++...- +.-+|..+ +...|+.++..|+++|++|+ +++- .-....-.....||+++.+.
T Consensus 7 ileil~~Y~~--~~i~Iat~-gSHSaL~Il~GAK~EGF~Ti---------~v~~-~gr~~~Y~~f~~a~e~i~v~----- 68 (361)
T COG1759 7 ILEILENYDL--EDITIATI-GSHSALQILDGAKEEGFRTI---------AVCQ-RGREKPYEKFPVADEVIIVD----- 68 (361)
T ss_pred HHHHHHhccc--cceEEEEe-ecchHHHHhhhHHhcCCcEE---------EEEe-cCccchHHhhchhheEEEec-----
Confidence 4456665522 22234444 46899999999999999985 3433 22112222334578888884
Q ss_pred CCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCC
Q 000086 115 NNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2304)
Q Consensus 115 ~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~ 192 (2304)
.|.|+ +.|.+-.++. ++|+.-.|......-.-..-.+.-++.+|+. ..++.-.|...-+.+++++|++.|.-
T Consensus 69 -~f~dil~~~iqe~L~~~--n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR-~lLrwE~~~~~~~~lLekAgi~~P~~-- 142 (361)
T COG1759 69 -KFSDILNEEIQEELREL--NAIFIPHGSFVAYVGYDGIENEFEVPMFGNR-ELLRWEEDRKLEYKLLEKAGLRIPKK-- 142 (361)
T ss_pred -hhHHHhhHHHHHHHHHc--CeEEecCCceEEEecchhhhhcccCcccccH-hHhhhhcchhhHHHHHHHcCCCCCcc--
Confidence 44333 2334434443 4444333332222112122233456667654 44555669999999999999999982
Q ss_pred CCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC-----
Q 000086 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----- 267 (2304)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----- 267 (2304)
..+++| |.-|||||....-||+|-+++.|.+|+.+..+++....-
T Consensus 143 -----------------------~~~Pee-------Idr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~ed 192 (361)
T COG1759 143 -----------------------YKSPEE-------IDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEED 192 (361)
T ss_pred -----------------------cCChHH-------cCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhh
Confidence 345655 456999999999999999999999999999998875321
Q ss_pred CCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceE-----------------------EEeCCCCCCCHH
Q 000086 268 GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-----------------------IEEGPITVAPLE 324 (2304)
Q Consensus 268 ~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKi-----------------------ieeaPa~~l~~e 324 (2304)
-....||||+-|. ++..+.+...--+.+-+.+-| ||.+-- +...|.+ +.+.
T Consensus 193 lkna~IeEYv~G~-~f~~~yFyS~i~~~lEl~g~D----~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v-lRES 266 (361)
T COG1759 193 LKNARIEEYVVGA-PFYFHYFYSPIKDRLELLGID----RRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV-LRES 266 (361)
T ss_pred hhhceeeEEeecc-ceeeeeeeccccCceeEeeee----heeeccchhhccCCHHHHhhcCCCceEEEECCcchh-hHHH
Confidence 1367899999874 666665543322223333322 222211 1123544 6677
Q ss_pred HHHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCCc
Q 000086 325 TVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2304)
Q Consensus 325 ~~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2304)
+..++.+++.+++++. |..|+++.|.++++ +=.+++.|+.+|+.++.
T Consensus 267 LL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~Ri~gGT 319 (361)
T COG1759 267 LLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSARIVGGT 319 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEeccccCCc
Confidence 7788888888877765 78899999999995 66899999999997653
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.1e-10 Score=156.34 Aligned_cols=69 Identities=28% Similarity=0.493 Sum_probs=66.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|.|||||+|++|+|++||+|++||+|++||+|||+++|.||.+|+|+++ +++|+.|.+|++|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4579999999999999999999999999999999999999999999999999 99999999999999885
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PLN02226 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-09 Score=137.30 Aligned_cols=66 Identities=30% Similarity=0.462 Sum_probs=62.4
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 103 ~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~ 169 (463)
T PLN02226 103 ITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSE 169 (463)
T ss_pred cceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCC
Confidence 4589999999999999999999999999999999999999999988 99999999999999997543
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-09 Score=134.00 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=62.2
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.|.+|++|+.++...
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 579999999999999999999999999999999999999999988 99999999999999998654
|
|
| >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-09 Score=102.75 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=57.9
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
+|++.+|++++|++|++||+++.+|+|||.++|+||.+|+|..+ ++.|+.+.+|+.|++|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 78999999999999999999999999999999999999999988 9999999999999874
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. |
| >PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-09 Score=134.17 Aligned_cols=65 Identities=20% Similarity=0.356 Sum_probs=62.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.|..|++|++|+..+
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 479999999999999999999999999999999999999999988 99999999999999998654
|
|
| >PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=128.89 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
...|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 14 ~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 14 VTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3469999999999999999999999999999999999999999888 99999999999999998655
|
|
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=119.59 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeec--CCCCC--cCe
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKAS--WGGGG--KGI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs--~GgGG--kGI 246 (2304)
+.+.+|++++++|||+|+|.. +++.+++.++++++| ||+++||. .|+-| -||
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~-----------------------~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV 60 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYV-----------------------ATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGV 60 (386)
T ss_pred cHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceE
Confidence 467889999999999999876 788999999999999 99999998 33322 299
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC--CCEEEee---ccccc-cccc-
Q 000086 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY--GNVAALH---SRDCS-VQRR- 308 (2304)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~~--G~vi~l~---~RdcS-vqrr- 308 (2304)
+++.|.+++.++++++.... ++ ..++||+++++++|+.+.++.|.. |.++.++ +.+.- +...
T Consensus 61 ~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~ 140 (386)
T TIGR01016 61 KVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKS 140 (386)
T ss_pred EEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhC
Confidence 99999999999998876421 12 369999999978999999999863 4444433 11110 1111
Q ss_pred cceE--EEeCCCC--------------CCCHHHHHHHHHHHHHHHHHCC
Q 000086 309 HQKI--IEEGPIT--------------VAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 309 ~qKi--ieeaPa~--------------~l~~e~~~~m~e~A~rlakalG 341 (2304)
..|+ +...|.. .++....+++.+.+.++.+.+.
T Consensus 141 p~~i~~~~i~p~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~ 189 (386)
T TIGR01016 141 PEKIIKYAIDPLTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFL 189 (386)
T ss_pred ccceEEEEcCCCcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1122 2222311 1345666778888888877765
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-07 Score=107.51 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=121.4
Q ss_pred cccccccCCCceecccCCCCeEEEEEEEE-CCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1913 WIGGIFDKDSFVETLEGWARTVVTGRARL-GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1913 ~~~gl~D~gsF~E~~~~~a~~vVtG~arl-~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
|+..||-.+. ++. -...++.|-+.. +|+++.||.+. + +|.++-+.+.+.|+
T Consensus 2 ~l~~Lf~~~~--~~~--~~~~v~~g~~~~~~~~~iaVvg~~---------------~---------~~~vGl~ea~~lA~ 53 (234)
T PF06833_consen 2 WLAALFPDGH--GIP--ASVQVLDGEAGGEDGRFIAVVGDA---------------N---------HGEVGLEEAWALAK 53 (234)
T ss_pred hHHHhcCCCC--CcC--cccceEEeeccccCCcEEEEEecC---------------C---------CCcccHHHHHHHHH
Confidence 6666665421 111 134588888888 88999998861 1 57899999999999
Q ss_pred HHHHhh--ccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC---CCEEEEEcCCCcCCchhhhhcccccCCc
Q 000086 1992 ALMDFN--REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSD 2066 (2304)
Q Consensus 1992 ~i~~~~--~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~~I~~~ge~~GGa~vv~~~~i~~d 2066 (2304)
++.+.- ..+.|||.++|++|-..|.++|.-|+-++.|.+.++|..++ .|+|..|. |++-+|+|++.+-. +|
T Consensus 54 ~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~--G~A~SGaFLA~Glq--A~ 129 (234)
T PF06833_consen 54 AVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVY--GKAMSGAFLAHGLQ--AN 129 (234)
T ss_pred HHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEe--cccccHHHHHHHHH--hc
Confidence 998764 48999999999999999999999999999888888877754 79999999 89999999999875 34
Q ss_pred cceeecccCcEEEeeCccchhhhhcchh
Q 000086 2067 HIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2067 ~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
. +||.|++.+.||+.+.++.|.-|.-
T Consensus 130 r--l~AL~ga~i~vM~~~s~ARVTk~~v 155 (234)
T PF06833_consen 130 R--LIALPGAMIHVMGKPSAARVTKRPV 155 (234)
T ss_pred c--hhcCCCCeeecCChHHhHHHhhcCH
Confidence 5 8999999999999999998866544
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=125.55 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=62.7
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
-|+|++|+|++||+|++||+|++||+.|..++|.||.+|+|.++ +++|++|..|++|++|+.++.
T Consensus 16 EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 16 EGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred eEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 68999999999999999999999999999999999999999999 999999999999999998754
|
|
| >TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-08 Score=122.58 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=61.7
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|+++ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 13 TEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGN 78 (403)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 359999999999999999999999999999999999999999988 99999999999999998653
|
dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. |
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-07 Score=116.45 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCCCCCc----Ce
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGK----GI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGk----GI 246 (2304)
+++.+|++++++|||+|+|.. +++.+|+.++++++ ||||++||....||| ||
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~-----------------------~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV 60 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIV-----------------------ATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGV 60 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCee-----------------------eCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccE
Confidence 578899999999999999876 78999999999999 999999998655555 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEee
Q 000086 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2304)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~-~G~vi~l~ 299 (2304)
+++.|.+++.++++++.... ++ ..++||+++++++|+.+.+..|. .|.++.++
T Consensus 61 ~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 61 KLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred EEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 99999999999999887542 12 25899999998899999999996 46666544
|
|
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-06 Score=106.63 Aligned_cols=193 Identities=20% Similarity=0.201 Sum_probs=125.1
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc-CCcEEEeecCC
Q 000086 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWG 240 (2304)
Q Consensus 162 Ps~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~G 240 (2304)
.+.+...++.||..++.++.++|||+|+... .++.+.+......+.+++.+++... ..++++||+.|
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G 83 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIF------------NVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANG 83 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEE------------eccceEEecccccCHHHHHHHHHhccCCcEEEEeCCC
Confidence 6678888999999999999999999999432 2233333333467888998888764 68999999999
Q ss_pred CCCcCeEEECCHH------HHHHHHHHHHhhCCCCcEEEEEeccccc-----------eeeEEEEEcCCCCEEEe--e--
Q 000086 241 GGGKGIRKVHNDD------EVRALFKQVQGEVPGSPIFIMKVASQSR-----------HLEVQLLCDQYGNVAAL--H-- 299 (2304)
Q Consensus 241 gGGkGIr~V~s~e------EL~~a~~~~~~e~~~~~i~VEeyI~g~r-----------eieVqvl~D~~G~vi~l--~-- 299 (2304)
.||+||.+++..+ +....+.... ...+..++||+++.... -+.|-.+.+. |.+..+ .
T Consensus 84 ~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lR 161 (285)
T PF14397_consen 84 SGGKGILVIDRRDGSEINRDISALYAGLE-SLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLR 161 (285)
T ss_pred CCccCEEEEEeecCcccccchhHHHHHHH-hcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEE
Confidence 9999999987665 2222222222 11122799999996532 1333344343 222110 0
Q ss_pred -cc----------------------cccc--ccccceEEEeCCCCCC-----CHHHHHHHHHHHHHHHHHCCceeeeEEE
Q 000086 300 -SR----------------------DCSV--QRRHQKIIEEGPITVA-----PLETVKKLEQAARRLAKCVNYVGAATVE 349 (2304)
Q Consensus 300 -~R----------------------dcSv--qrr~qKiieeaPa~~l-----~~e~~~~m~e~A~rlakalGy~Ga~tVE 349 (2304)
++ -+.. ...+.+.++.-|.+.. .-.-++++.+.+.++++.+...+....|
T Consensus 162 lg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWD 241 (285)
T PF14397_consen 162 LGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWD 241 (285)
T ss_pred eCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEE
Confidence 00 0011 0111222333343321 2234789999999999999888999999
Q ss_pred EEEEccCCcEEEEEeccCCCC
Q 000086 350 YLYSMETGEYYFLELNPRLQV 370 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqg 370 (2304)
+.+|+ +| |.+||.|.|.+.
T Consensus 242 vait~-~G-p~llE~N~~~~p 260 (285)
T PF14397_consen 242 VAITE-DG-PVLLEGNARWDP 260 (285)
T ss_pred EEEcC-CC-cEEEEeeCCCCC
Confidence 99993 45 999999999543
|
|
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=127.41 Aligned_cols=65 Identities=26% Similarity=0.396 Sum_probs=62.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~~ 78 (633)
T PRK11854 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESAD 78 (633)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEeccc
Confidence 478999999999999999999999999999999999999999988 99999999999999998763
|
|
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.8e-08 Score=127.55 Aligned_cols=66 Identities=21% Similarity=0.393 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
...|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 4589999999999999999999999999999999999999999998 99999999999999997543
|
|
| >PLN02528 2-oxoisovalerate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-07 Score=116.40 Aligned_cols=64 Identities=25% Similarity=0.524 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-|+|++|+|++||.|++||+++++|+|||++++.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 12 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 12 ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 38999999999999999999999999999999999999999988 99999999999999997443
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=102.93 Aligned_cols=172 Identities=14% Similarity=0.129 Sum_probs=120.1
Q ss_pred EEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHH--HcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1625 GMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLAC--AKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1625 g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~--~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
+||++..++ +|++|.|++|+..+ .||..++.|..+....+. +.++|+|.|.|+.|++++..+|...+.+
T Consensus 21 ~vv~G~arl------~G~~V~vIa~~~~~---~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~ 91 (238)
T TIGR03134 21 GVLVGSAEL------AGGKVTVIGVVPDA---EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQ 91 (238)
T ss_pred cEEEEEEEE------CCEEEEEEEECCCC---cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHH
Confidence 699999987 99999999999866 889899999999998863 4899999999999999997665443210
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
...++.... ..++. ..+|+
T Consensus 92 ---------------------a~A~l~~a~----------------------------a~a~~------------~~vP~ 110 (238)
T TIGR03134 92 ---------------------ALAHLAKAL----------------------------ALARL------------AGHPV 110 (238)
T ss_pred ---------------------HHHHHHHHH----------------------------HHhhc------------CCCCE
Confidence 001110000 00011 12699
Q ss_pred EEEEcCcccchhhhhhcc-cCEEEEecCcceEecChHHHHHhhcccccc-------cccccCcceeecccCceEEEecCc
Q 000086 1783 LTYVTGRTVGIGAYLARL-GMRCIQRLDQPIILTGFSALNKLLGREVYS-------SHMQLGGPKIMATNGVVHLTVSDD 1854 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~l-gd~~I~~~~~~i~ltG~~al~~~lG~~vy~-------s~~~lGG~~i~~~nGv~d~~v~dd 1854 (2304)
|++|+|.++|||++--.+ +|++++-+++.+..-+|..--..+-+++-. .+..--+++...+.|.+|-+.+..
T Consensus 111 IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 111 IGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVA 190 (238)
T ss_pred EEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCC
Confidence 999999999987665555 899999999999999998877776654410 011123444456899999988633
Q ss_pred HH--HHHHHHHHHh
Q 000086 1855 LE--GISAILKWLS 1866 (2304)
Q Consensus 1855 ~~--~~~~i~~~Ls 1866 (2304)
.. .-+.+...++
T Consensus 191 ~~~~~~~~~~~~~~ 204 (238)
T TIGR03134 191 DADAPAAQLAAVLA 204 (238)
T ss_pred CcccHHHHHHHHHH
Confidence 31 1245555554
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-07 Score=121.40 Aligned_cols=65 Identities=28% Similarity=0.443 Sum_probs=61.6
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|+.|+.++
T Consensus 128 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 193 (546)
T TIGR01348 128 EKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAG 193 (546)
T ss_pred ceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCC
Confidence 458999999999999999999999999999999999999999998 99999999999999998654
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-07 Score=121.58 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=62.7
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
+...|+|++|+|++||.|++||+|++||+|||.++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 146 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 213 (590)
T TIGR02927 146 SVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG 213 (590)
T ss_pred CcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 34579999999999999999999999999999999999999999988 99999999999999997543
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-07 Score=118.60 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=63.6
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
++.+|+|++|+|++||.|++||++++||+|||+++|.|+.+|+|+.+ +++|+.|..|++|++|+.++.
T Consensus 10 ~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~~ 78 (546)
T TIGR01348 10 DNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGAG 78 (546)
T ss_pred CCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecccc
Confidence 34789999999999999999999999999999999999999999988 999999999999999986543
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.5e-07 Score=117.14 Aligned_cols=64 Identities=25% Similarity=0.466 Sum_probs=61.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.+
T Consensus 131 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 131 TEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred ceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 359999999999999999999999999999999999999999988 9999999999999999755
|
|
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=97.12 Aligned_cols=180 Identities=19% Similarity=0.275 Sum_probs=117.5
Q ss_pred HHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCC--C-cCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc
Q 000086 153 STKGIIFLGPPATSMAALGDKIGSSLIAQAANV--P-TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV 229 (2304)
Q Consensus 153 ~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGV--P-tpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I 229 (2304)
.+.|+.|+.| ...||+...+.+.+... | .|++.. +.+.+++.++.++.
T Consensus 5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~-----------------------~~~~~~l~~~L~~y 55 (262)
T PF14398_consen 5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETEL-----------------------LTSFEDLREMLNKY 55 (262)
T ss_pred hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceE-----------------------cCCHHHHHHHHHHC
Confidence 3478999977 35899999999998542 2 233222 66788888888876
Q ss_pred CCcEEEeecCCCCCcCeEEEC----------------------CHHHHHHHHHHHHhhCCCCcEEEEEeccc----ccee
Q 000086 230 GYPAMIKASWGGGGKGIRKVH----------------------NDDEVRALFKQVQGEVPGSPIFIMKVASQ----SRHL 283 (2304)
Q Consensus 230 GyPVVIKPs~GgGGkGIr~V~----------------------s~eEL~~a~~~~~~e~~~~~i~VEeyI~g----~rei 283 (2304)
+ -|+|||..|++|+||.+++ +.+++...+... .....++||+.|+- ++.+
T Consensus 56 ~-~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~yIiQq~I~l~~~~gr~f 131 (262)
T PF14398_consen 56 K-SVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL---LGKRRYIIQQGIPLATYDGRPF 131 (262)
T ss_pred C-EEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh---cCCCcEEEeCCccccccCCCeE
Confidence 5 5999999999999997653 235555554443 34568999999963 4555
Q ss_pred eEEEE--EcCCCC--EEEeeccccccccccceEEEeC-------CC-CC-----CCHHHHHHHHHHHHHHHHHC----Cc
Q 000086 284 EVQLL--CDQYGN--VAALHSRDCSVQRRHQKIIEEG-------PI-TV-----APLETVKKLEQAARRLAKCV----NY 342 (2304)
Q Consensus 284 eVqvl--~D~~G~--vi~l~~RdcSvqrr~qKiieea-------Pa-~~-----l~~e~~~~m~e~A~rlakal----Gy 342 (2304)
.+-++ -|+.|. +..+..|-. ..+ .++..- |. .. -.....++|.+.|..+++.+ |.
T Consensus 132 D~RvlvqK~~~G~W~vtg~~~Rva---~~~-~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~ 207 (262)
T PF14398_consen 132 DFRVLVQKNGSGKWQVTGIVARVA---KPG-SIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGG 207 (262)
T ss_pred EEEEEEEECCCCCEEEEEEEEEEc---CCC-CceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555 455553 333333321 111 111110 00 00 12335667777777777665 66
Q ss_pred -eeeeEEEEEEEccCCcEEEEEeccCCCC
Q 000086 343 -VGAATVEYLYSMETGEYYFLELNPRLQV 370 (2304)
Q Consensus 343 -~Ga~tVEfl~d~~~g~~yfLEINpRlqg 370 (2304)
.|-..+|+-+| .+|+++|||+|++++-
T Consensus 208 ~~gElGiDl~iD-~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 208 HLGELGIDLGID-KNGKIWLIEVNSKPGK 235 (262)
T ss_pred ceeEEEEEEEEc-CCCCEEEEEEeCCCCc
Confidence 57889999999 5899999999999874
|
|
| >cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-06 Score=81.19 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=60.9
Q ss_pred eeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 690 l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
-+++-.|++.+|.+..|+.|.+|++++.+|+|||.+++.+|.+|+|... +.+|+.+..|++|++|
T Consensus 9 ~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 9 GESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3468889999999999999999999999999999999999999999877 9999999999999874
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. |
| >PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-06 Score=107.04 Aligned_cols=66 Identities=27% Similarity=0.462 Sum_probs=62.1
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-..|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+.|..|++|+.|..++
T Consensus 14 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 14 MTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 4579999999999999999999999999999999999999999988 99999999999999997544
|
|
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.6e-06 Score=112.62 Aligned_cols=65 Identities=28% Similarity=0.525 Sum_probs=61.3
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|+|++|+|++||+|++||++++||+|||++++.||.+|+|..+ +++|+.|..|++|+.|+.++
T Consensus 14 ~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 469999999999999999999999999999999999999999988 99999999999999997543
|
|
| >TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.8e-06 Score=107.84 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCc-cCCCCEEEEEecC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQA-MQAGELIARLDLD 757 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~-v~~G~~La~l~~~ 757 (2304)
-..|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+. |..|++|++|+.+
T Consensus 11 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 11 MTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred cceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence 3468999999999999999999999999999999999999999988 999999 9999999999754
|
This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score. |
| >KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-06 Score=102.15 Aligned_cols=62 Identities=27% Similarity=0.460 Sum_probs=59.2
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
-|.|-.|+.++||+|++++.+++||+.|...+|.||.+|+|+.+ +++|++|.+|+.|+.|++
T Consensus 86 eG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 86 EGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 46777799999999999999999999999999999999999988 999999999999999997
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.8e-06 Score=107.28 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=60.6
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
--|+|.+|+|++||.|++||++++||+|||.+++.||.+|+|.++ +++|+ .|..|++|++|+.+.
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 15 EEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred ceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 358999999999999999999999999999999999999999988 99995 799999999997543
|
|
| >PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-06 Score=106.78 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=59.1
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEec
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDL 756 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~ 756 (2304)
.-|+|++|+|++||.|++||+|++||++|+.+++.||.+|+|.++ +++|+ .|..|++|+++..
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 348999999999999999999999999999999999999999988 99996 7999999998853
|
|
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=107.00 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=61.9
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
+...|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+.|..|++|++|+..
T Consensus 13 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 13 SVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 44578999999999999999999999999999999999999999988 9999999999999999753
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0002 Score=91.33 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=84.6
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCC----cCeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGG----KGIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGG----kGIr 247 (2304)
-+.++.+++++|||+|++.. +++.+|+.++++++||| +++|+..-.|| -||.
T Consensus 5 E~eak~lL~~yGIpvp~~~~-----------------------~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~ 61 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGAL-----------------------AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIK 61 (392)
T ss_pred HHHHHHHHHHcCCCCCCceE-----------------------ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEE
Confidence 45778999999999999876 78999999999999995 59997432323 3789
Q ss_pred EECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEee
Q 000086 248 KVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~-~G~vi~l~ 299 (2304)
++.|++++.++++++.+.. ++ ..++||+.++.++|+-+.+..|. .|.++.++
T Consensus 62 l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 62 LCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred EECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 9999999999999987642 12 36899999998899999999986 56666663
|
|
| >PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.8e-05 Score=90.50 Aligned_cols=106 Identities=25% Similarity=0.407 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCC-----CCcCe
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-----GGKGI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-----GGkGI 246 (2304)
+-..++.++..+|||+|+|.. +++.+|+.++++++||||++|...-. ---||
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~-----------------------~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV 67 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRL-----------------------VTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGV 67 (222)
T ss_dssp -HHHHHHHHHTTT------EE-----------------------ESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-E
T ss_pred CHHHHHHHHHHcCcCCCCeeE-----------------------eCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcE
Confidence 556789999999999999876 88999999999999999999998643 11267
Q ss_pred EE-ECCHHHHHHHHHHHHhhC----C---CCcEEEEEecc-ccceeeEEEEEcC-CCCEEEeec
Q 000086 247 RK-VHNDDEVRALFKQVQGEV----P---GSPIFIMKVAS-QSRHLEVQLLCDQ-YGNVAALHS 300 (2304)
Q Consensus 247 r~-V~s~eEL~~a~~~~~~e~----~---~~~i~VEeyI~-g~reieVqvl~D~-~G~vi~l~~ 300 (2304)
++ +.|++++.++|+++.... + ...++||+.+. ++.|+.|-+..|. +|.++.++.
T Consensus 68 ~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 68 RLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp EEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence 77 889999999999887553 2 25799999998 7899999999986 677777654
|
|
| >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00018 Score=79.95 Aligned_cols=109 Identities=21% Similarity=0.365 Sum_probs=69.5
Q ss_pred eeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCee----------------------------
Q 000086 607 QVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS---------------------------- 658 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s---------------------------- 658 (2304)
.+.+++||..|.+++.+.+...|.+++||+.|+|+++.+.... ..++..
T Consensus 3 ~~~~~~~g~~~~v~v~~~~~~~~~itvnG~~y~V~vee~~~~~---~~~~~~~~~~~~~~~p~~~~~p~~~~~p~~~~~~ 79 (153)
T PRK05641 3 KVKVIVDGVEYEVEVEELGPGKFRVSFEGKTYEVEAKGLGIDL---SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAP 79 (153)
T ss_pred eEEEEECCEEEEEEEEeecCccEEEEECCEEEEEEEEEccccc---ccccccccccccccCcccccCcccccccCccccC
Confidence 4678899999999999988889999999999999987754211 000000
Q ss_pred -----EEEEeeecccceEEEE-eCc-------eeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 659 -----HVVYAEEEAAGTRLLI-DGR-------TCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 659 -----~~v~~~ee~~~~~v~v-~g~-------t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
..+...-...-..+.+ .|. -+.++...-...|.||..|+|.++++++||.|+.||+|+.|
T Consensus 80 ~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 80 ASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 0000000000000111 111 11112222236799999999999999999999999999986
|
|
| >KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.5e-05 Score=94.96 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=60.6
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCC-CccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEG-QAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G-~~v~~G~~La~l~~~~ 758 (2304)
-|+|++|..++||.+.+||.|+|||++|..|++.++.+|.+.+| +.+| ..|..|.+|+.|..++
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e 117 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDE 117 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEeccc
Confidence 59999999999999999999999999999999999999999988 9999 8999999999987544
|
|
| >PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00033 Score=89.62 Aligned_cols=101 Identities=16% Similarity=0.275 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc---CCcEEEeec--CCCCC---
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV---GYPAMIKAS--WGGGG--- 243 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I---GyPVVIKPs--~GgGG--- 243 (2304)
.-+.++++++++|||+|++.. +.+.+|+.+.++++ ++|+|+|+. .||-|
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~v-----------------------a~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~ 87 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGAA-----------------------ASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGT 87 (422)
T ss_pred CHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccc
Confidence 467889999999999999776 78999999999998 699999999 44433
Q ss_pred ------cCeEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC--CCCEE
Q 000086 244 ------KGIRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ--YGNVA 296 (2304)
Q Consensus 244 ------kGIr~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~--~G~vi 296 (2304)
-||.++++ +++.++++++.+.. .+ ..++|++.+...+|+-+.+..|. .|.++
T Consensus 88 hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 88 FKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred cccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 33667766 99999999887541 11 25787777777789999999996 35555
|
|
| >PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=84.42 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=73.8
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCc----CeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GIr 247 (2304)
-+.++++++++|||+|++.. +++++|+.++++++|.| +||||---.||+ ||.
T Consensus 4 EyqaK~ll~~~gi~vp~g~~-----------------------a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk 60 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVV-----------------------ATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVK 60 (202)
T ss_dssp HHHHHHHHHCTT----SEEE-----------------------ESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCCeee-----------------------cCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCcee
Confidence 36789999999999999665 78999999999999985 799997665555 689
Q ss_pred EECCHHHHHHHHHHHHhhCC--------C---CcEEEEEeccccceeeEEEEEcCCCCE
Q 000086 248 KVHNDDEVRALFKQVQGEVP--------G---SPIFIMKVASQSRHLEVQLLCDQYGNV 295 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~--------~---~~i~VEeyI~g~reieVqvl~D~~G~v 295 (2304)
+++|++|+.++..++.+..- | ..++||++++..+|+-+.+..|.....
T Consensus 61 ~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~ 119 (202)
T PF08442_consen 61 IAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRG 119 (202)
T ss_dssp EESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTE
T ss_pred ecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCc
Confidence 99999999999988764321 1 367999999999999999998876443
|
They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E .... |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0069 Score=80.34 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=122.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC--cceEe--------c-ChHHHHHh-----hcc----cccccccccCcc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPIIL--------T-GFSALNKL-----LGR----EVYSSHMQLGGP 1838 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~--~~i~l--------t-G~~al~~~-----lG~----~vy~s~~~lGG~ 1838 (2304)
..|+|+.|.|.|+|||..++..||++|+.++ +.+.+ . |......+ +|. ++.-+.+.+.+.
T Consensus 123 pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~Ae 202 (550)
T PRK08184 123 GLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGK 202 (550)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHH
Confidence 4699999999999999999999999999976 33322 2 11112222 222 111122333433
Q ss_pred eeecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccccC-CCCChHHHhhcccCCCCCccccc
Q 000086 1839 KIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNNGKWIGGI 1917 (2304)
Q Consensus 1839 ~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~-~~yD~r~~i~~~~d~~~~~~~gl 1917 (2304)
+ ...-|++|.+++++ +..+.+.+|..-+-.. +| ...+..-+.+.|- +..|. + |+
T Consensus 203 e-A~~~GLVd~vv~~d-~l~~~a~~~A~~ia~~----~~----~~~~~~~~~~~~~~~~~~~----------~-----~~ 257 (550)
T PRK08184 203 R-AVDWRLVDEVVKPS-KFDAKVAERAAELAAA----SD----RPADAKGVALTPLERTIDA----------D-----GL 257 (550)
T ss_pred H-HHHcCCccEeeCHH-HHHHHHHHHHHHHHhC----CC----CCCCCCccccccccccccC----------C-----ce
Confidence 3 34689999999754 4445555543322111 11 1112223334442 22221 1 22
Q ss_pred ccCCCceecccCCCCeEEEEEEEECCeEEEEEE-EecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHh
Q 000086 1918 FDKDSFVETLEGWARTVVTGRARLGGIPVGIVA-VETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDF 1996 (2304)
Q Consensus 1918 ~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA-~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~ 1996 (2304)
..+. +..-.- ..|. |+.|. |.+.. .|+-+..-++..--..|.+.-.....++++.+
T Consensus 258 ~~~~------------~~v~~~-~~~~-va~itlnrP~~---------~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~ 314 (550)
T PRK08184 258 RYRH------------VDVEID-RAAR-TATITVKAPTA---------AQPADIAGIVAAGAAWWPLQMARELDDAILHL 314 (550)
T ss_pred eeEE------------EEEEEE-ccCC-EEEEEEeCccc---------ccccccccccccccccCCHHHHHHHHHHHHHH
Confidence 2211 111111 2232 33333 31110 01100001111112478999999999999988
Q ss_pred hc--cCCCEEEEecCC--CCCCchh--hh-------hhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCch-hhhhcc
Q 000086 1997 NR--EELPLFILANWR--GFSGGQR--DL-------FEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG-AWVVVD 2060 (2304)
Q Consensus 1997 ~~--~~lPLv~l~d~~--Gf~~G~~--~e-------~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GG-a~vv~~ 2060 (2304)
.. ..+-.|+|.-.. .|+.|.. .. ..+.......++..+..+.+|+|..|-+|...+|| .-+++.
T Consensus 315 ~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLala 392 (550)
T PRK08184 315 RTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALA 392 (550)
T ss_pred HhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHH
Confidence 64 577778887654 3777765 11 01222334456778899999999999424444455 444444
|
|
| >PRK13380 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.9e-05 Score=84.44 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=47.5
Q ss_pred CeeeeCCCceeEEEEcc-CCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 688 SKLVAETPCKLLRYLVS-DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~-~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
+.....+.|+|+.+.+. +|++|++||++++||+|||+.+|.||.+|+|..+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~v 87 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEV 87 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEE
Confidence 45678899999999987 8999999999999999999999999999999887
|
|
| >PLN02235 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00088 Score=84.85 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHC-----CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc---cCCc-EEEeecCCCCCc
Q 000086 174 IGSSLIAQAA-----NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV---VGYP-AMIKASWGGGGK 244 (2304)
Q Consensus 174 ~~sr~laq~a-----GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~---IGyP-VVIKPs~GgGGk 244 (2304)
+.++++++++ |||+|.... ++++.+|+.+++++ +|.| +||||---.||+
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v----------------------~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgR 66 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSA----------------------QVTESTDFNELANKEPWLSSTKLVVKPDMLFGKR 66 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCee----------------------ccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCC
Confidence 4567888887 999998654 24889999999888 8876 599998877766
Q ss_pred C----eEEECCHHHHHHHHHHHHhhC------CC--CcEEEEEeccccceeeEEEEEcCCCCEE
Q 000086 245 G----IRKVHNDDEVRALFKQVQGEV------PG--SPIFIMKVASQSRHLEVQLLCDQYGNVA 296 (2304)
Q Consensus 245 G----Ir~V~s~eEL~~a~~~~~~e~------~~--~~i~VEeyI~g~reieVqvl~D~~G~vi 296 (2304)
| |.+++|++|+.++.+++.+.. .| ..++||++++-.+|+-+.++.|.....+
T Consensus 67 GKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~i 130 (423)
T PLN02235 67 GKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSI 130 (423)
T ss_pred cccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEE
Confidence 4 899999999999999887543 11 2579999999889999999998876653
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.017 Score=76.44 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=68.0
Q ss_pred ccccccCCCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCC-C-CCCchhhh---------hhhHHHHHHHHHHHHHcC
Q 000086 1971 ERVVPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWR-G-FSGGQRDL---------FEGILQAGSTIVENLRTY 2037 (2304)
Q Consensus 1971 ~~~~~~~gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~-G-f~~G~~~e---------~~gilk~ga~iv~al~~~ 2037 (2304)
..++.|....|.++-......++..+.+ ..+-+|+|.=.. . |+.|..-. ....+.....++..+..+
T Consensus 285 ~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (546)
T TIGR03222 285 AAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVS 364 (546)
T ss_pred ccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcC
Confidence 3455565678999999999999998863 677777776542 2 77665421 012223334578889999
Q ss_pred CCCEEEEE-cCCCcCCch-hhhhcccccCCccceeec-------ccCcEEEeeC
Q 000086 2038 KQPVFVYI-PMMAELRGG-AWVVVDSRINSDHIEMYA-------DRTAKGNVLE 2082 (2304)
Q Consensus 2038 ~vP~i~~I-~~~ge~~GG-a~vv~~~~i~~d~~~~~A-------~p~A~~gvl~ 2082 (2304)
.+|+|..| - |...+|| .-+++. +|+ .+| .++++++.-+
T Consensus 365 ~kpviAav~~-G~a~GgG~~eLala----cD~--~ia~~~~~~~~~~a~f~~~e 411 (546)
T TIGR03222 365 SRSLFALIEP-GSCFAGTLAELAFA----ADR--SYMLAFPDNNDPEPAITLSE 411 (546)
T ss_pred CCCEEEEECC-CeEeHHHHHHHHHh----Cce--eeecCCCCCCCCCCEEeCCc
Confidence 99999999 7 3344445 444444 355 666 6666665533
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >cd06848 GCS_H Glycine cleavage H-protein | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00026 Score=73.08 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=43.4
Q ss_pred eeeCCCceeEEE-EccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 690 LVAETPCKLLRY-LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 690 l~APmPGkvv~~-~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
....+.|+|+.+ ++++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 23 ~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~ 72 (96)
T cd06848 23 YAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEV 72 (96)
T ss_pred HHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEE
Confidence 445678999995 4555999999999999999999999999999999877
|
Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=74.84 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCC-EEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC--CCcCCch
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM--MAELRGG 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~--~ge~~GG 2054 (2304)
.|.+.+..+....+.++.+...+.. |++..|+|| |.+..+-.+.+++..++.|++++|.| |-.+.||
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpG----------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 7 NGAITPATADYLERAIDQAEEGGADALIIELDTPG----------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAG 76 (187)
T ss_pred eeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCC----------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHH
Confidence 3677788888999999988776644 677779999 44445567788888899999999975 4555667
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|+++.+ |. ++|.|+|++|..+|-
T Consensus 77 ~~iala~----D~--iva~p~a~~g~~~~~ 100 (187)
T cd07020 77 TYILLAA----HI--AAMAPGTNIGAAHPV 100 (187)
T ss_pred HHHHHhC----Cc--eeECCCCcEEecccc
Confidence 7877765 66 899999999998886
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00036 Score=87.09 Aligned_cols=34 Identities=6% Similarity=0.129 Sum_probs=31.5
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|.||.+|+|.+++|++||+|++||+|+.|+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 3568999999999999999999999999999975
|
|
| >PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00057 Score=87.92 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCeeeeCCCceeEEEE-ccCCCEEccCCcEEEEEc-------------c-------------------------------
Q 000086 687 PSKLVAETPCKLLRYL-VSDGSHIDADTPYAEVEV-------------M------------------------------- 721 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~-V~~Gd~V~~G~~l~~iEa-------------M------------------------------- 721 (2304)
...|.|+.+|.|.+++ +++||+|++||+|++|++ .
T Consensus 123 ~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~ 202 (409)
T PRK09783 123 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 202 (409)
T ss_pred eEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4579999999999998 999999999999999982 0
Q ss_pred ----ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 722 ----KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 722 ----Km~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
.-...|+||.+|+|... +.+|+.|.+|++|++|...++
T Consensus 203 ~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 203 TRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred cCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 01347999999999988 999999999999999975554
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0034 Score=71.47 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=72.0
Q ss_pred CccCHHHHHHHHHHHHHhhccC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEc-CCCcCCc-hh
Q 000086 1979 QVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP-MMAELRG-GA 2055 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~-~~ge~~G-Ga 2055 (2304)
|.+.+..+.-..|.++.|...+ -+|++..|+|| |.+..+-.|.+++...++|+++++. ++|.+.+ |+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPG----------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCC----------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHH
Confidence 6788888888899999987764 57999999999 4555667788999999999999995 4444433 66
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
|+++.. |. .++.|++++|..+|-+
T Consensus 78 ~I~~a~----~~--i~m~p~s~iG~~~pi~ 101 (172)
T cd07015 78 YIALGS----HL--IAMAPGTSIGACRPIL 101 (172)
T ss_pred HHHHhc----Cc--eEECCCCEEEEccccc
Confidence 666664 55 8999999999999954
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0015 Score=80.92 Aligned_cols=103 Identities=17% Similarity=0.306 Sum_probs=83.9
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCc----CeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr 247 (2304)
-+.++++++++|||+|+... +.+++|+.++++++| .|+|+|+---.||+ ||+
T Consensus 5 EYqaKelf~~~GiPvp~g~v-----------------------~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk 61 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYV-----------------------ATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVK 61 (387)
T ss_pred HHHHHHHHHHcCCCCCCcee-----------------------eeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceE
Confidence 36789999999999999655 789999999999998 89999997644444 799
Q ss_pred EECCHHHHHHHHHHHHh----hCC-C---CcEEEEEecc-ccceeeEEEEEcCCCCEEEe
Q 000086 248 KVHNDDEVRALFKQVQG----EVP-G---SPIFIMKVAS-QSRHLEVQLLCDQYGNVAAL 298 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~----e~~-~---~~i~VEeyI~-g~reieVqvl~D~~G~vi~l 298 (2304)
++.|.+|..++.+.+.+ ... + ..++||+.++ -.+|+-+.++.|.....+.+
T Consensus 62 ~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 62 LAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred EeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 99999999999999886 322 2 3689999998 44499999999887655443
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00031 Score=83.25 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=91.3
Q ss_pred CCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCC-----Ccc---hHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCC
Q 000086 1620 GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAG-----SFG---PREDAFFLAVTDLACAKKLPLIYLAANSGARI 1691 (2304)
Q Consensus 1620 g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~G-----S~g---~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi 1691 (2304)
+..+-.+|+++..+ +|++|+|++++-..-.. .|| |..=+|-.|++++|.+.++|+|.|.|..||-.
T Consensus 91 f~dD~Aivgglar~------~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAyp 164 (317)
T COG0825 91 FADDPAIVGGLARF------GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYP 164 (317)
T ss_pred cCcChhheeeeeeE------CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 33455589999876 99999999998766222 355 99999999999999999999999999999998
Q ss_pred CchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccc-cccccc
Q 000086 1692 GVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIA 1770 (2304)
Q Consensus 1692 ~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~-~SG~ia 1770 (2304)
+...|= .|- -+.++ +||. .++
T Consensus 165 G~~AEE---------------rGQ---------~eAIA-------------------------------~nL~em~~--- 186 (317)
T COG0825 165 GIGAEE---------------RGQ---------SEAIA-------------------------------RNLREMAR--- 186 (317)
T ss_pred Ccchhh---------------ccc---------HHHHH-------------------------------HHHHHHhC---
Confidence 854321 110 00111 0110 111
Q ss_pred cccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh
Q 000086 1771 GAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1771 g~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~ 1817 (2304)
-.+|+||+|.|--.+|||.--..||+|.|-+++..-+-.|
T Consensus 187 -------LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisP 226 (317)
T COG0825 187 -------LKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISP 226 (317)
T ss_pred -------CCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecCh
Confidence 1479999999988888888778899999988875555444
|
|
| >TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00041 Score=73.15 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=41.0
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.-+-|.|+.+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 26 q~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~v 73 (110)
T TIGR03077 26 QENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEV 73 (110)
T ss_pred HHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 345577777765 56999999999999999999999999999999887
|
The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown. |
| >PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00029 Score=76.40 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=44.7
Q ss_pred ccccCCCceecccCC----CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1916 GIFDKDSFVETLEGW----ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1916 gl~D~gsF~E~~~~~----a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
.+|| .|+|+.++- .+++|+|+|+++|+||.||+.+.+- +..|++..+ .|+..|.+++|+.|
T Consensus 75 ~l~~--df~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG~------------~~~e~~~rN-FGm~~PeGYRKAlR 139 (145)
T PF03255_consen 75 NLFD--DFIELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKGR------------DTKENIKRN-FGMPHPEGYRKALR 139 (145)
T ss_dssp HH-E--EEEE----SSS---TTEEEEEEEETTEEEEEEEE---S------------SCCHHHHTG-GG---HHHHHHHHH
T ss_pred HHhC--cCeEecCCccCCcCccceeeeEEECCEEEEEEEEecCc------------CHHHHHHHc-CCCCCcchHHHHHH
Confidence 3777 599998764 6799999999999999999998652 234444444 67999999999999
Q ss_pred HHHHhh
Q 000086 1992 ALMDFN 1997 (2304)
Q Consensus 1992 ~i~~~~ 1997 (2304)
.++.|+
T Consensus 140 lmk~Ae 145 (145)
T PF03255_consen 140 LMKQAE 145 (145)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
|
4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: |
| >PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00053 Score=86.29 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|.++++|.|.+++|++||+|++||+|+.|+.
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 4568999999999999999999999999999986
|
|
| >PRK01202 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00071 Score=73.31 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=57.1
Q ss_pred eeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000086 690 LVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2304)
Q Consensus 690 l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2304)
......|+|+.+.. +.|++|++||+++.||+||...+|.||.+|+|..+ ....+.|+ .|+ -|++|.+.++
T Consensus 31 ~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~ 109 (127)
T PRK01202 31 HAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDE 109 (127)
T ss_pred HHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCH
Confidence 44567888887754 56999999999999999999999999999999887 33455666 565 8888887764
|
|
| >TIGR01730 RND_mfp RND family efflux transporter, MFP subunit | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=82.28 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=62.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc--------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2304)
...|.||.+|+|.+++|++||+|++||+|+.++.--
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~ 105 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD 105 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 357999999999999999999999999999997410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 723 ---------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-...|+||.+|+|..+ +++|+.+.+|++|+.|...+
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 0236999999999988 99999999999999987554
|
This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. |
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0011 Score=75.45 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=43.4
Q ss_pred cCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000086 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 216 V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~i~VEeyI~g~re 282 (2304)
..+.+++.++.++.|. +|+||..|.||+||.++.. ...+...++.+.... ..++++|+|++.-++
T Consensus 18 s~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~-~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 18 SRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNG-ERPVMVQPFLPEIKE 83 (173)
T ss_dssp ES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTT-TS-EEEEE--GGGGG
T ss_pred ECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcC-CccEEEEeccccccC
Confidence 4678999999999998 9999999999999999987 445666665554322 358999999976543
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00098 Score=82.76 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=61.6
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccc----------------------------------------------
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK---------------------------------------------- 722 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK---------------------------------------------- 722 (2304)
.|.++.+|+|.++.|++||+|++||+|+.|+.=.
T Consensus 49 ~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~ 128 (310)
T PRK10559 49 AIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQAN 128 (310)
T ss_pred EEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3889999999999999999999999999998610
Q ss_pred ------------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 723 ------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 723 ------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
=...|+||.+|+|..+ +++|+.|.+|++|+.|...+.
T Consensus 129 ~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 129 NVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence 0247999999999988 999999999999998865543
|
|
| >TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0025 Score=75.66 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=61.1
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCC
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~ 758 (2304)
..-|+||.+|.+.. .++-||.|+|||+|+.|+. .+|+||.+|+|.-++++|..|.+|.-|+.|++-.
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGlirdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLIHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEecCCCCcCCCCEEEEECCCC
Confidence 45799999996655 8999999999999999985 7999999999999999999999999999997664
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins. |
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0095 Score=71.44 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=105.7
Q ss_pred HHHHhcCHHHHHHHHHHCC--CCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCC
Q 000086 166 SMAALGDKIGSSLIAQAAN--VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGG 243 (2304)
Q Consensus 166 am~~lgDK~~sr~laq~aG--VPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGG 243 (2304)
.+..|.||...|...++.+ ...||..+ ..++++++.- ..+.-++||||..|+|+
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll~----------------------v~~~~~~i~~--~~Lp~~fViK~nhgsg~ 69 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLLG----------------------VYDNPDDIDF--DSLPDKFVIKPNHGSGS 69 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECceee----------------------cCCChhhhhh--hcCCCCEEEEEecCCCc
Confidence 3567899999999999885 34455433 1234444322 34557899999999998
Q ss_pred cCeEEECCHHHHHHHHHHHH---h--------hCC----CCcEEEEEeccccc-----eeeEEEEEcCCCCEEE------
Q 000086 244 KGIRKVHNDDEVRALFKQVQ---G--------EVP----GSPIFIMKVASQSR-----HLEVQLLCDQYGNVAA------ 297 (2304)
Q Consensus 244 kGIr~V~s~eEL~~a~~~~~---~--------e~~----~~~i~VEeyI~g~r-----eieVqvl~D~~G~vi~------ 297 (2304)
.+|....+.-+...+...+. . |.. ...+|+|++++... .+-+.++. |.+..
T Consensus 70 ~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~---G~~~~i~v~~~ 146 (239)
T PF14305_consen 70 NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN---GKPKFIQVDSD 146 (239)
T ss_pred EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC---CEEEEEEEEeC
Confidence 88887665444333332221 1 110 24799999996532 34333332 32222
Q ss_pred --------eeccccccccccceEEEe--CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 298 --------LHSRDCSVQRRHQKIIEE--GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 298 --------l~~RdcSvqrr~qKiiee--aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
++.+|-... .+... .......|+..++|.++|.+|++.+.| ..|||... ++++||=|+-..
T Consensus 147 r~~~~~~~~yd~dw~~l----~~~~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~--~~~iyFGElTf~ 217 (239)
T PF14305_consen 147 RFGNHKRNFYDRDWNRL----PFRSDYPPDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNV--DGKIYFGELTFT 217 (239)
T ss_pred CCCCeEEEEECcccCCC----ccccCCCCCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEe--CCcEEEEeeecC
Confidence 222221110 01001 122334577889999999999999876 48999988 899999999998
Q ss_pred CCCC
Q 000086 368 LQVE 371 (2304)
Q Consensus 368 lqge 371 (2304)
+++.
T Consensus 218 p~~G 221 (239)
T PF14305_consen 218 PGAG 221 (239)
T ss_pred CCCc
Confidence 8765
|
|
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0065 Score=69.69 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=74.0
Q ss_pred CCccCHHHHHHHHHHHHHhhccC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhh
Q 000086 1978 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAW 2056 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~ 2056 (2304)
.|.+.+..+.-..|.++.+.+.+ -.|++..|+|| |.+..+-.|.+.+..+++|++++|. +-...||+|
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspG----------G~v~~~~~I~~~l~~~~~pvva~V~-g~AaSaG~~ 75 (178)
T cd07021 7 EGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPG----------GRVDSALEIVDLILNSPIPTIAYVN-DRAASAGAL 75 (178)
T ss_pred eeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----------CCHHHHHHHHHHHHhCCCCEEEEEC-CchHHHHHH
Confidence 36888888999999999998876 46888899999 5566677889999999999999998 344455777
Q ss_pred hhcccccCCccceeecccCcEEEeeCccc
Q 000086 2057 VVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2057 vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+++.+ |. +++.|++++|..+|-.
T Consensus 76 ia~a~----d~--i~m~p~a~iG~~~~v~ 98 (178)
T cd07021 76 IALAA----DE--IYMAPGATIGAAEPIP 98 (178)
T ss_pred HHHhC----Ce--EEECCCCeEecCeeEc
Confidence 77764 66 8999999999988853
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=77.74 Aligned_cols=178 Identities=15% Similarity=0.259 Sum_probs=102.4
Q ss_pred CCeEECCCHHHHHHhcCHHHHHHHHHHC-------CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhc
Q 000086 156 GIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV 228 (2304)
Q Consensus 156 GI~fiGPs~eam~~lgDK~~sr~laq~a-------GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~ 228 (2304)
.+.++ -|+++++.+.|+..+.+++++. +|.+|++.. |.. . ..+..+.. ..+.
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~-------------i~~-----~-~~~~~~~l-~~ag 136 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVV-------------INS-----D-AESLPELL-KEAG 136 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEE-------------ESS-----S-HCCHHHHH-HCTT
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEE-------------EcC-----C-HHHHHHHH-HHCC
Confidence 56666 7889999999999999999885 334444322 110 0 12233322 2357
Q ss_pred cCCcEEEeecCCCC---CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-cceeeEEEEEcCCCCEEEeecccc-
Q 000086 229 VGYPAMIKASWGGG---GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-SRHLEVQLLCDQYGNVAALHSRDC- 303 (2304)
Q Consensus 229 IGyPVVIKPs~GgG---GkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g-~reieVqvl~D~~G~vi~l~~Rdc- 303 (2304)
+.||+|+||....| +..|.++.+++.|.+. ..|+++|||+.. +.-+-|-+++|.. .+..|..
T Consensus 137 L~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L---------~~P~VlQeFVNHggvLfKVyVvGd~v----~~v~R~SL 203 (307)
T PF05770_consen 137 LKFPLICKPLVACGSADSHKMAIVFNEEGLKDL---------KPPCVLQEFVNHGGVLFKVYVVGDKV----FVVKRPSL 203 (307)
T ss_dssp S-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEETTEE----EEEEEE--
T ss_pred CcccEEeeehhhcCCccceEEEEEECHHHHhhc---------CCCEEEEEeecCCCEEEEEEEecCEE----EEEECCCC
Confidence 88999999988654 5679999999998752 359999999964 3456666666542 2211110
Q ss_pred ---cc---ccc-----cceEE-----------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC-CcEE
Q 000086 304 ---SV---QRR-----HQKII-----------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET-GEYY 360 (2304)
Q Consensus 304 ---Sv---qrr-----~qKii-----------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~-g~~y 360 (2304)
+. .+. .+.+- ...+.. ......+.+.+.|..+-+++|+ ..+++|++.+..+ |++|
T Consensus 204 pn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~ 281 (307)
T PF05770_consen 204 PNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYY 281 (307)
T ss_dssp ----SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEE
T ss_pred CCCCcccccccccceeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEE
Confidence 00 000 00000 000111 1111245688899999999998 4778999998777 7899
Q ss_pred EEEeccCCC
Q 000086 361 FLELNPRLQ 369 (2304)
Q Consensus 361 fLEINpRlq 369 (2304)
++.||-=++
T Consensus 282 VIDINyFPg 290 (307)
T PF05770_consen 282 VIDINYFPG 290 (307)
T ss_dssp EEEEEES--
T ss_pred EEEeccCCC
Confidence 999998765
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00084 Score=61.11 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=32.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMC 724 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~ 724 (2304)
..|.||++|+|.++.|++||+|++||+|++|+.-...
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 3588999999999999999999999999999875443
|
|
| >PRK03598 putative efflux pump membrane fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0016 Score=81.42 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.||++|.|.+++|++||.|++||+|+.|+.
T Consensus 44 i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 44 VNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 358999999999999999999999999999974
|
|
| >KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00078 Score=80.47 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=59.3
Q ss_pred eeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 697 kvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
.|.+|.|++||+|+.=|+++++.+.|...+|++-.+|+|+++ .++++....|++|..++.++
T Consensus 80 ~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~ 142 (474)
T KOG0558|consen 80 TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED 142 (474)
T ss_pred eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence 588999999999999999999999999999999999999999 99999999999999998655
|
|
| >PRK00624 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0014 Score=69.53 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=49.8
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe---e-CCCCccCC---CC-EEEEEecCCC
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---M-AEGQAMQA---GE-LIARLDLDDP 759 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i---~-~~G~~v~~---G~-~La~l~~~~~ 759 (2304)
.-+-|.|+.+.. ++|++|++||++++||+||+..+|.||.+|+|..+ + ..-+.++. |+ =|++|+++++
T Consensus 28 ~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~ 104 (114)
T PRK00624 28 QENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDED 104 (114)
T ss_pred HHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCh
Confidence 345677777765 55999999999999999999999999999999877 2 11222222 22 4666666554
|
|
| >PRK15136 multidrug efflux system protein EmrA; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0019 Score=82.77 Aligned_cols=33 Identities=0% Similarity=0.147 Sum_probs=30.7
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.++.+|+|.++.|++||.|++||+|++|+.
T Consensus 62 v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 458899999999999999999999999999974
|
|
| >TIGR00527 gcvH glycine cleavage system H protein | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0014 Score=70.98 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=42.2
Q ss_pred eeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 691 VAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 691 ~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.....|.|+.+.. ++|++|++||+++.||+||+..+|.||.+|+|..+
T Consensus 31 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 79 (127)
T TIGR00527 31 AQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEV 79 (127)
T ss_pred HhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEe
Confidence 4567788877744 57999999999999999999999999999999877
|
The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff. |
| >PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0033 Score=80.43 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=62.2
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc--------------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM-------------------------------------------- 723 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm-------------------------------------------- 723 (2304)
..|.++++|+|.++.|++||+|++||+|+.|+.--.
T Consensus 64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 469999999999999999999999999999976210
Q ss_pred ---------------------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCCCC
Q 000086 724 ---------------------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDDPS 760 (2304)
Q Consensus 724 ---------------------------~~~l~ap~~G~V~~i-~~~G~~v~~G--~~La~l~~~~~~ 760 (2304)
...|+||++|+|... +.+|+.|.+| ++|+.|...++-
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~l 210 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDPI 210 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCce
Confidence 247999999999887 9999999996 589888766553
|
|
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.02 Score=64.46 Aligned_cols=90 Identities=19% Similarity=0.102 Sum_probs=67.4
Q ss_pred CccCH---HHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1979 QVWFP---DSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1979 g~~~p---~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
|.+.. .++....+.++.+... -|+++..|+|| |....+-.+++.+..++.|+++++. +-.+.||+
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspG----------G~~~~~~~i~~~i~~~~~pvi~~v~-g~a~s~g~ 74 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPG----------GDVFAGLAIYNALKRHKGKVTVKID-GLAASAAS 74 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc-chHHhHHH
Confidence 34444 4677777788877665 89999999999 3345667889999999999999998 23344455
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
++++.. |. .++.|++++++-.|.+.
T Consensus 75 ~ia~a~----d~--~~~~~~a~~~~~~~~~~ 99 (160)
T cd07016 75 VIAMAG----DE--VEMPPNAMLMIHNPSTG 99 (160)
T ss_pred HHHhcC----Ce--EEECCCcEEEEECCccc
Confidence 666654 55 89999999999888654
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >PRK15030 multidrug efflux system transporter AcrA; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0035 Score=80.53 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=60.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc---------------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK--------------------------------------------- 722 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK--------------------------------------------- 722 (2304)
..|.++.+|+|.++.|++||+|++||+|+.|+.-.
T Consensus 66 ~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~ 145 (397)
T PRK15030 66 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 145 (397)
T ss_pred EEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 46999999999999999999999999999997411
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCCCE--EEEEecCCC
Q 000086 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGEL--IARLDLDDP 759 (2304)
Q Consensus 723 --------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~~--La~l~~~~~ 759 (2304)
=...|+||++|+|... +++|+.|.+|+. |++|...++
T Consensus 146 a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 146 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecCc
Confidence 0246999999999888 999999999985 677765554
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.029 Score=65.43 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=73.4
Q ss_pred ccccccCCCccCHHHHHHHHHHHHHhhc-c-CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1971 ERVVPQAGQVWFPDSATKTAQALMDFNR-E-ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1971 ~~~~~~~gg~~~p~sa~K~a~~i~~~~~-~-~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
.+++.. +|.+.+..+.-..+.+...+. . .-||.+..|+|| |-+-.|-.|.+++...+.|+.+++.
T Consensus 23 ~r~I~i-~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~ag~aI~d~i~~~~~~V~t~v~-- 89 (197)
T PRK14512 23 SRSIVI-AGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG----------GDIDAGFAIFNMIRFVKPKVFTIGV-- 89 (197)
T ss_pred CcEEEE-CCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhCCCCEEEEEE--
Confidence 334444 567888877776666655554 2 489999999999 3455778899999999999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
|-+.+ |+.+++.... . ..|+.|+|++-+..|.+.+
T Consensus 90 G~AaSaaslIl~ag~~--~--~R~~~p~s~imiHqP~~~~ 125 (197)
T PRK14512 90 GLVASAAALIFLAAKK--E--SRFSLPNARYLLHQPLSGF 125 (197)
T ss_pred eeeHhHHHHHHhcCCc--C--ceeECCCCcEEEEcCcccc
Confidence 55555 6666666532 2 2788999999999997653
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.036 Score=64.85 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=71.4
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.+|.+.+..+....+-+...+.. .-|+.++.|++| |-...|-.|.+++...+.|+.+++. |.+.|
T Consensus 36 i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaS~ 103 (200)
T PRK00277 36 LGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPDVSTICI--GQAASM 103 (200)
T ss_pred ECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCEEEEEE--eEeccH
Confidence 36788888888877766666553 568999999999 3445677889999999999999998 55555
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++++... .+. .++.|+|++++-.|.+.
T Consensus 104 a~~I~~ag~--~~~--r~~~p~s~imih~p~~~ 132 (200)
T PRK00277 104 GAFLLAAGA--KGK--RFALPNSRIMIHQPLGG 132 (200)
T ss_pred HHHHHhcCC--CCC--EEEcCCceEEeccCccc
Confidence 666666532 233 68899999999988753
|
|
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.023 Score=63.87 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=66.6
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
.|.+++.+.....+.++.+... --+|++-.|++|.. ...+..+.+++..++.|+++++. |.+.| |
T Consensus 5 ~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~----------~~~~~~i~~~l~~~~kpvva~~~--g~~~s~g 72 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGR----------VDAGMNIVDALQASRKPVIAYVG--GQAASAG 72 (161)
T ss_pred EeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcC----------HHHHHHHHHHHHHhCCCEEEEEC--ChhHHHH
Confidence 4677788888888888888764 35677778988732 23455677888888999999998 44445 4
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.|+++. .|. +|+.|++.+++.+|...
T Consensus 73 ~~la~~----~d~--~~~~~~a~~~~~g~~~~ 98 (161)
T cd00394 73 YYIATA----ANK--IVMAPGTRVGSHGPIGG 98 (161)
T ss_pred HHHHhC----CCE--EEECCCCEEEEeeeEEe
Confidence 444444 355 89999999999999753
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.029 Score=71.12 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCccCHHHHHHHHHHHHHhhccC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCC--cCCch
Q 000086 1978 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMA--ELRGG 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~g--e~~GG 2054 (2304)
.|.++|.++.-..|.++.+.+++ -.+|...|||| |.+...-+|++++.++.+|++.|+.|.| .+-.|
T Consensus 34 ~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPG----------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAG 103 (436)
T COG1030 34 DGAIDPASADYLQRALQSAEEENAAAVVLELDTPG----------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAG 103 (436)
T ss_pred cCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCC----------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchh
Confidence 57999999999999999999998 88999999999 5666677899999999999999999865 45569
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|+++.+ |. .+|-|...+|...|=
T Consensus 104 tyI~m~~----hi--aaMAPgT~iGaa~Pi 127 (436)
T COG1030 104 TYILMAT----HI--AAMAPGTNIGAATPI 127 (436)
T ss_pred hHHHHhc----Ch--hhhCCCCccccccee
Confidence 9999986 55 788899888877773
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.038 Score=64.40 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=72.7
Q ss_pred cCCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1976 QAGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1976 ~~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..||.+.+.++..+...+...+.+ .-|+.+..|++| |-+-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 29 fl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~t~~~--G~AaS 96 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG----------GSVYDGLGIFDTMQHVKPDVHTVCV--GLAAS 96 (196)
T ss_pred EECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehh
Confidence 457889999988887777766654 489999999999 3344677899999999999999998 66666
Q ss_pred -hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 -Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+.+.++... ...+|.|+|++.+-.|.+.
T Consensus 97 ~AslIl~aG~~----~~R~~~p~a~iMIHqP~~~ 126 (196)
T PRK12551 97 MGAFLLCAGAK----GKRSSLQHSRIMIHQPLGG 126 (196)
T ss_pred HHHHHHhCCCC----CceecCCCCEEEEecCCcc
Confidence 4444454322 2278899999999999654
|
|
| >PRK11556 multidrug efflux system subunit MdtA; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0057 Score=79.05 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=60.7
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc--------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2304)
...|.++++|+|.++.|++||+|++||+|++|..-.
T Consensus 87 ~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld 166 (415)
T PRK11556 87 TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELD 166 (415)
T ss_pred EEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence 457999999999999999999999999999995410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000086 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2304)
Q Consensus 723 ---------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2304)
-...|+||++|+|... +.+|+.|.+|+ .|++|...++
T Consensus 167 ~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 233 (415)
T PRK11556 167 AQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTHP 233 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCCc
Confidence 0347999999999888 99999999985 5776654443
|
|
| >PRK11578 macrolide transporter subunit MacA; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0062 Score=77.48 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=31.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.||++|.|.++.|++||+|++||+|+.|+.
T Consensus 62 ~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 468999999999999999999999999999986
|
|
| >PRK09859 multidrug efflux system protein MdtE; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0057 Score=78.28 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=60.7
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc---------c------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---------K------------------------------------ 722 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM---------K------------------------------------ 722 (2304)
..|.++.+|+|.++.|++||+|++||+|++|+.- |
T Consensus 62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~ 141 (385)
T PRK09859 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDT 141 (385)
T ss_pred EEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 4599999999999999999999999999999831 0
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000086 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2304)
Q Consensus 723 --------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2304)
=...|+||++|+|... +.+|+.|.+|+ +|++|...++
T Consensus 142 a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 142 ARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence 1257999999999887 99999999995 6887765544
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.032 Score=65.59 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+++..+......+..++.. .-|+.+..|++| |-+-.|-.|.+++...+.|+.+++. |.+.+ |
T Consensus 41 ~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaSaa 108 (207)
T PRK12553 41 GGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG----------GSVTAGDAIYDTIQFIRPDVQTVCT--GQAASAG 108 (207)
T ss_pred cceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCcEEEEE--eehhhHH
Confidence 5788889999888888877765 579999999999 4455678899999999999999998 55555 5
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
++++++... +. .|+.|+|++.+-.|.
T Consensus 109 ~lI~~ag~~--~~--R~~~p~s~imiH~p~ 134 (207)
T PRK12553 109 AVLLAAGTP--GK--RFALPNARILIHQPS 134 (207)
T ss_pred HHHHHcCCc--Cc--EEECCCchhhhcCcc
Confidence 555665432 22 688999999999996
|
|
| >PRK12784 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.011 Score=57.31 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=64.0
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcccccee-eecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~-l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|.||.-|+|-+++|.+++.|-.=++|+.|+.|.-+++ |..-.+|-|+.+ +.+||.+.++.+|+.++.|
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 47899999999999999999999999999999988877 566799999999 9999999999999999865
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.047 Score=64.62 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
||.++...+......+-..+. .+-||.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+ |
T Consensus 60 ~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG----------Gsv~aGlaIyd~m~~~~~~V~tv~~--G~AAS~A 127 (221)
T PRK14514 60 GTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG----------GSVYAGLGIYDTMQFISSDVATICT--GMAASMA 127 (221)
T ss_pred CCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehhHH
Confidence 677777777666654433333 3589999999999 3345677899999999999999998 66666 5
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+.+.++...+ . .+|.|+|++.+-.|.+.
T Consensus 128 slIl~aG~~g--k--R~~~pna~iMiHqP~~~ 155 (221)
T PRK14514 128 SVLLVAGTKG--K--RSALPHSRVMIHQPLGG 155 (221)
T ss_pred HHHHhcCCCC--c--eeeCCCCEEEeccCCcc
Confidence 5555554322 2 68889999999999764
|
|
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.1 Score=63.06 Aligned_cols=108 Identities=18% Similarity=0.274 Sum_probs=81.6
Q ss_pred EEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeec-ccceEEEEeCceeccc--cCCCCCeeeeCCCceeEEEEccC
Q 000086 629 YTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE-AAGTRLLIDGRTCLLQ--NDHDPSKLVAETPCKLLRYLVSD 705 (2304)
Q Consensus 629 y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee-~~~~~v~v~g~t~~~~--~~~dp~~l~APmPGkvv~~~V~~ 705 (2304)
+.+..+|..|...|.+.+.+.+.+.+||...++-+..= .+++.++.+|+.+.+- .+.+.
T Consensus 606 vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~------------------ 667 (2196)
T KOG0368|consen 606 VDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDG------------------ 667 (2196)
T ss_pred eEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCceEEEEEeeccce------------------
Confidence 44667999999999999999999999999888877553 4567788888866542 33332
Q ss_pred CCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 706 GSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 706 Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
-.+.-|---+.+|..-=-..+++|.+|++.+. |+.|+-|.+|++-|++|
T Consensus 668 -~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 668 -YRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred -EEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 23344444555565444456999999999655 99999999999999987
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.085 Score=61.37 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=69.4
Q ss_pred cCCCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1976 QAGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1976 ~~gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..+|.+.+..+.....-+...+. ..-|+.+..|++| |-...|-.|.+.+...+.|+.+++. |.+.+
T Consensus 30 ~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG----------G~v~~g~~I~d~l~~~~~~v~t~~~--G~AaS 97 (191)
T TIGR00493 30 FLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG----------GSITAGLAIYDTMQFIKPDVSTICI--GQAAS 97 (191)
T ss_pred EEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--Eeecc
Confidence 45778888777666555444443 3579999999999 3455778899999999999999998 66655
Q ss_pred -hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 -Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|++++++... +. .++.|+|++.+-.|.+.
T Consensus 98 aaslI~~aG~~--~~--r~~~p~s~imiH~p~~~ 127 (191)
T TIGR00493 98 MGAFLLSAGAK--GK--RFSLPNSRIMIHQPLGG 127 (191)
T ss_pred HHHHHHhcCCC--Cc--EEecCCceEEEecCccc
Confidence 5666665422 22 68889999999999753
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.02 Score=59.58 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=58.6
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||||+|+|.---.+..++++-- .+..+ .+.|. |.-..+.+ +.+.+ +..|.+.|+++|++
T Consensus 2 kVLviGsGgREHAia~~l~~s~--------~v~~v-~~aPG----N~G~~~~~-~~~~~-------~~~d~~~l~~~a~~ 60 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSP--------SVEEV-YVAPG----NPGTAELG-KNVPI-------DITDPEELADFAKE 60 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCT--------TEEEE-EEEE------TTGGGTS-EEE-S--------TT-HHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhcCC--------CCCEE-EEeCC----CHHHHhhc-eecCC-------CCCCHHHHHHHHHH
Confidence 8999999876666666665431 11112 13332 33333333 33433 34678999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHH
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAA 169 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~ 169 (2304)
.++|.|++|-+..-. .-+.+.|.+.||..+||+.++.++
T Consensus 61 ~~idlvvvGPE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLV-AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp TTESEEEESSHHHHH-TTHHHHHHHTT-CEES--HHHHHH
T ss_pred cCCCEEEECChHHHH-HHHHHHHHHCCCcEECcCHHHHhc
Confidence 999999999221111 124599999999999999998764
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.099 Score=61.23 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=69.3
Q ss_pred cCCCccCHHHHHHHH-HHHHHhhc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1976 QAGQVWFPDSATKTA-QALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1976 ~~gg~~~p~sa~K~a-~~i~~~~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..||.+.+..+.... +.+.+... -.-|+.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 34 fl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~Tv~~--G~AaS 101 (200)
T CHL00028 34 FLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG----------GSVISGLAIYDTMQFVKPDVHTICL--GLAAS 101 (200)
T ss_pred EECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EehHH
Confidence 346777777776655 55554433 4689999999999 3344677899999999999999999 66666
Q ss_pred -hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 -Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+.+.++...+ . .++.|+|++.+-.|.+.
T Consensus 102 ~aslIl~aG~kg--~--R~~~p~s~imiHqp~~~ 131 (200)
T CHL00028 102 MASFILAGGEIT--K--RLAFPHARVMIHQPASS 131 (200)
T ss_pred HHHHHHhCCCCC--C--EEecCCCeEEEecCccC
Confidence 45555554322 2 58889999999999764
|
|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.085 Score=60.46 Aligned_cols=127 Identities=15% Similarity=0.217 Sum_probs=78.9
Q ss_pred hhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccc-cc
Q 000086 226 CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRD-CS 304 (2304)
Q Consensus 226 a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rd-cS 304 (2304)
.....||+|||--.+.+|.|-.+|+|..++.+...-+... .+-+.+|.|++....+.+|-+++.+ .+. -|. .|
T Consensus 46 ~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~~--~~Y~T~EPfId~kyDirvqkIG~~y---kA~-~R~sis 119 (203)
T PF02750_consen 46 LSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAIT--KDYATTEPFIDAKYDIRVQKIGNNY---KAY-MRTSIS 119 (203)
T ss_dssp CS-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHHH--TS-EEEEE---EEEEEEEEEETTEE---EEE-EEEESS
T ss_pred ccCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHhc--CceEEeeccccceeEEEEEEEcCeE---EEE-EEcccc
Confidence 3446799999999999999999999999888765554422 4578999999877788888887643 332 221 00
Q ss_pred ccc---ccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 305 VQR---RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 305 vqr---r~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
-.. -.--..|.-|. .++....+.++.+.+|---.+.||.+.. ++|+-|++|+|-
T Consensus 120 ~nWK~N~gsa~lEqi~~-------~~ryk~Wvd~~s~lfGGlDI~~v~ai~~-kdGke~Iievnd 176 (203)
T PF02750_consen 120 GNWKANTGSAMLEQIAM-------TERYKLWVDECSELFGGLDICAVDAIHG-KDGKEYIIEVND 176 (203)
T ss_dssp STSSTTSSSEEEEEE----------HHHHHHHHHHGGGGG--SEEEEEEEEE-TTS-EEEEEEE-
T ss_pred ccccccccchheeecCC-------ChHHHHHHHHHHHHcCCccEEEEEEEEc-CCCCEEEEEecC
Confidence 000 01112333332 2455667777788887777889999998 589999999995
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.037 Score=73.97 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=74.4
Q ss_pred eeeEeecCeEEEEEEEeeCC-----CeEEEeeCCeEEEEEEEEec---------------CCceEEEeCCeeEEEEeeec
Q 000086 607 QVSLNIEGSKYRIDMVRRGP-----GSYTLRMNESEIEAEIHTLR---------------DGGLLMQLDGNSHVVYAEEE 666 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~-----~~y~l~ing~~~~V~v~~l~---------------dg~l~v~~~G~s~~v~~~ee 666 (2304)
.+++..+|+.|.|++...++ ....+.+||+..++.+...+ .+.+...+.|....+.+++
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~- 543 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSA- 543 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCC-
Confidence 35556899999999976543 45677899988777554211 2234444455544444432
Q ss_pred ccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 667 AAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 667 ~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+-.+..+..-+.++...-.+.|.||..|+|.+++|++||.|..||+|++||+
T Consensus 544 --Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 544 --GDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred --CCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 2223333333344444446789999999999999999999999999999984
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.041 Score=63.22 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=93.9
Q ss_pred CCccCHHHHHHHHHHHHHh-hc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDF-NR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~-~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+++..+......+... +. ..-|+.++.|++| |-+..|-.+.+++..++.|+.+++. |.+.+ |
T Consensus 22 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG----------G~v~~g~~i~~~i~~~~~~v~t~~~--G~aaSaa 89 (182)
T PF00574_consen 22 NGPIDEESANRLISQLLYLENEDKNKPINIYINSPG----------GDVDAGLAIYDAIRSSKAPVTTVVL--GLAASAA 89 (182)
T ss_dssp ESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE----------BCHHHHHHHHHHHHHSSSEEEEEEE--EEEETHH
T ss_pred CCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC----------CccHHHHHHHHHHHhcCCCeEEEEe--Cccccce
Confidence 5788888888876655444 33 5679999999999 4466788999999999999999999 55544 4
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2134 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 2134 (2304)
+.+.+... ..+-|+.|+|++.+-.|.....- ...++...+..++..-..+.+.+.+. ...+++ ++.
T Consensus 90 ~~i~~ag~----~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~-tg~~~~-------~i~ 155 (182)
T PF00574_consen 90 TLIFLAGD----KGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAER-TGLSKE-------EIE 155 (182)
T ss_dssp HHHHHTSS----TTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHH-HTS-HH-------HHH
T ss_pred ehhhhcCC----cCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHH-hCCcHH-------HHH
Confidence 55555542 21137889999999999755433 23333333332222111111212111 011111 111
Q ss_pred HHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCc
Q 000086 2135 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2173 (2304)
Q Consensus 2135 ~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~ 2173 (2304)
+ .-..|.+-+|..+++.|+||.|+..
T Consensus 156 ~-------------~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 156 E-------------LMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp H-------------HCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred H-------------HHhCCccccHHHHHHcCCCCEeccC
Confidence 1 0113455689999999999999875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.15 Score=57.77 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
.|.+++..+....+.+..++.. .-|+++..|+|| |-.-.+-.|.+++...+.|+.+++. |.+.+ |
T Consensus 6 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG----------G~v~~~~~i~~~i~~~~~~v~~~~~--g~aaS~~ 73 (162)
T cd07013 6 TGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG----------GDVFAGMAIYDTIKFIKADVVTIID--GLAASMG 73 (162)
T ss_pred ccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCceEEEE--eehhhHH
Confidence 4567778888887777777664 379999999999 3345667889999999999999998 55555 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+++....+ . .++-|++++++-.|-+.
T Consensus 74 ~~i~~a~~~g--~--r~~~p~a~~~ih~~~~~ 101 (162)
T cd07013 74 SVIAMAGAKG--K--RFILPNAMMMIHQPWGG 101 (162)
T ss_pred HHHHHcCCCC--c--EEEecCEEEEEccCccc
Confidence 6666654322 2 56778999998877653
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0099 Score=73.73 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+...|.+|.+|+| +++|++||+|++||+|+.++.
T Consensus 20 ~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 3467999999999 999999999999999999984
|
... |
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.088 Score=60.13 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=70.1
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.+|.+.+..+......+..++.. .-|+.+..|+|| |-.-.|-.+.+.+...+.|+.+++. |.+.+
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG----------G~v~~~~~i~~~l~~~~~~v~t~~~--g~aaS~ 81 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPPVSTICL--GLAASM 81 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--eEehhH
Confidence 36788888888877777776654 369999999999 3344667788889889999999998 55555
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++.+....+ . .|+.|+|++.+-.|.+.
T Consensus 82 ~~~i~~~g~~~--~--r~~~~~a~~~~h~~~~~ 110 (171)
T cd07017 82 GALLLAAGTKG--K--RYALPNSRIMIHQPLGG 110 (171)
T ss_pred HHHHHHcCCCC--C--EEEccchHHHHcCCCcc
Confidence 55555554322 2 68889999999888653
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.23 Score=58.16 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.||.+.++.|.-+..-+-..+.. .-|+-+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 32 l~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG----------G~v~~GlaIyd~m~~~~~~V~Ti~~--G~AaS~ 99 (201)
T PRK14513 32 VGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG----------GEVYAGLAIYDTMRYIKAPVSTICV--GIAMSM 99 (201)
T ss_pred ECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CchhhHHHHHHHHHhcCCCEEEEEE--eeehhh
Confidence 37888888888876555555553 579999999999 3345678899999999999999999 66666
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+.+.++..-+ . .+|.|+|++-+-.|.+.
T Consensus 100 As~il~aG~kg--k--R~~~pna~iMIHqp~~~ 128 (201)
T PRK14513 100 GSVLLMAGDKG--K--RMALPNSRIMIHQGSAG 128 (201)
T ss_pred HHHHHhcCCCC--c--EEecCCeEEEEecCCCC
Confidence 45554544211 2 57789999999888754
|
|
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.27 Score=58.54 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=64.0
Q ss_pred ccCHHHHHHHHHHHHHhhcc-CCCE-EEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhh
Q 000086 1980 VWFPDSATKTAQALMDFNRE-ELPL-FILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWV 2057 (2304)
Q Consensus 1980 ~~~p~sa~K~a~~i~~~~~~-~lPL-v~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~v 2057 (2304)
...+.+.....+.++.+.+. ++-. |+-.|++|+++...++. ...+..++....|+++++- +.+.||-|+
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el-------~~~i~~~~~~~kpVia~~~--~~~sggy~l 95 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEEL-------RQALERFRASGKPVIAYAD--GYSQGQYYL 95 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHH-------HHHHHHHHHhCCeEEEEeC--CCCchhhhh
Confidence 34467788888999988764 5664 45569999855544332 4556667777899999988 555556666
Q ss_pred hcccccCCccceeecccCcEEEeeCcc
Q 000086 2058 VVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2058 v~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
++.+ |. +||.|++.+|..|.-
T Consensus 96 asaa----d~--I~a~p~~~vg~iGv~ 116 (222)
T cd07018 96 ASAA----DE--IYLNPSGSVELTGLS 116 (222)
T ss_pred hhhC----CE--EEECCCceEEeeccc
Confidence 6653 65 899999999998763
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.031 Score=64.72 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=35.5
Q ss_pred ceEEEEEc---CcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vt---g~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+|+.+. |.++|+|++++..||++++.+++.+++.++.
T Consensus 59 kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~ 100 (187)
T cd07020 59 VPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPV 100 (187)
T ss_pred CCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEecccc
Confidence 59999999 9999999999999999999999998875553
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.015 Score=53.02 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=31.0
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
..|.+|.+|+|..+ +++|+.|++||+|++|+..+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 47899999999999 99999999999999997654
|
|
| >TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.034 Score=69.57 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.8
Q ss_pred CeeeeCCC---ceeEEEEccCCCEEccCCcEEEEEc
Q 000086 688 SKLVAETP---CKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 688 ~~l~APmP---Gkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
..|.+|.+ |+|.+++|++||+|++||+|+.|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 35889999 9999999999999999999999985
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members. |
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.039 Score=71.06 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
....|.||.+|.|.+++|++||.|++||+|+.++.
T Consensus 42 ~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 42 NVKVVQHLEGGIVREILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred CeeecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence 35568999999999999999999999999999953
|
Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. |
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.18 Score=57.77 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhc-cCCCE-EEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcc
Q 000086 1983 PDSATKTAQALMDFNR-EELPL-FILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD 2060 (2304)
Q Consensus 1983 p~sa~K~a~~i~~~~~-~~lPL-v~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~ 2060 (2304)
..+.....++++.+.+ .++-. |+-.|++|.... . .+....++.++..++.|+++++- |....||.|+++.
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~---~----~~~~~~~i~~~~~~~kpVia~v~-G~a~g~g~~la~a 92 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVT---A----SEVIRAELAAARAAGKPVVASGG-GNAASGGYWISTP 92 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHH---H----HHHHHHHHHHHHhCCCCEEEEEC-CchhHHHHHHHHh
Confidence 3467788888888766 45654 444566653221 1 12334567788889999999998 3444445555555
Q ss_pred cccCCccceeecccCcEEEeeCcc
Q 000086 2061 SRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2061 ~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|. +||.|+++++..+.-
T Consensus 93 ----~D~--i~a~~~a~~~~~G~~ 110 (177)
T cd07014 93 ----ANY--IVANPSTLVGSIGIF 110 (177)
T ss_pred ----CCE--EEECCCCeEEEechH
Confidence 466 899999999998763
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.035 Score=53.96 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
-...+.||..|+|.++++++||.|+.||+|++||
T Consensus 37 ~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 37 MEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999997
|
|
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.33 Score=57.51 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=57.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEE-ecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCC-cCCchh
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMA-ELRGGA 2055 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~g-e~~GGa 2055 (2304)
..+++.......++++.+.. .++-.|+| .|++|.+.... . .....+..+.. +.|+++++- | .+.||.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~---~----~l~~~l~~~~~-~KpViA~v~--g~a~s~gy 89 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGV---F----ELADAIRAARA-GKPIVAFVN--GLAASAAY 89 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHH---H----HHHHHHHHHhc-CCCEEEEEC--CchhhHHH
Confidence 34567788888999998865 46666555 67776322111 1 12223333444 599999998 4 344566
Q ss_pred hhhcccccCCccceeecccCcEEEeeCc
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|+++. +|. +||.|+|.+|..|.
T Consensus 90 ~lA~~----aD~--i~a~~~a~~g~iG~ 111 (214)
T cd07022 90 WIASA----ADR--IVVTPTAGVGSIGV 111 (214)
T ss_pred HHHhc----CCE--EEEcCCCeEEeeeE
Confidence 66655 466 89999999887754
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.1 Score=64.41 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=25.3
Q ss_pred cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000086 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2304)
Q Consensus 232 PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~ 280 (2304)
-.|+||..|+.|+||+++++.+++.+. ......+++||+||+.+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~-----~~~~~~~~vvQkYI~~P 110 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF-----SKNKNQPYVVQKYIENP 110 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC-----HCCTTS-EEEEE--SSB
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH-----hhhhhhhhhhhhccCCC
Confidence 489999999999999999999988854 12335789999999863
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.4 Score=56.54 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cC-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCC--CCEEEEEcCCCcCCch
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QPVFVYIPMMAELRGG 2054 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP~i~~I~~~ge~~GG 2054 (2304)
|++. .+.....+.++.+.. .+ ..||+-.|++|.+. ..+..+.+++..++ .|+++++. +..+.||
T Consensus 9 g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~----------~~~~~l~~~i~~~~~~kpvia~v~-g~a~s~g 76 (207)
T TIGR00706 9 GAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTV----------VASEEIYEKLKKLKAKKPVVASMG-GVAASGG 76 (207)
T ss_pred EEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCH----------HHHHHHHHHHHHhcCCCCEEEEEC-CccchHH
Confidence 3443 456677778877754 33 46777788887332 23344566666665 99999998 2334467
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
.|+++.+ |. +||.|++.+|..|.-.
T Consensus 77 ~~la~aa----D~--i~a~p~a~vg~iGv~~ 101 (207)
T TIGR00706 77 YYIAMAA----DE--IVANPGTITGSIGVIL 101 (207)
T ss_pred HHHHhcC----CE--EEECCCCeEEeeeEEE
Confidence 7777654 65 8999999888766643
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >PRK07051 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.039 Score=55.25 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.2
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
......|+||.+|+|.++.+++|+.|+.||+|++|+
T Consensus 44 ~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 44 MKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334457999999999999999999999999999986
|
|
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.29 Score=57.87 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhcc-CCCEEEE-ecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcC-Cchhhhhccc
Q 000086 1985 SATKTAQALMDFNRE-ELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDS 2061 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~~-~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~-~GGa~vv~~~ 2061 (2304)
+..-..+.++.+... ++-.|+| .|++|......+ . ....+..+.....|+++++- |-+ .||.|+++.
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~---~----~~~~l~~~~~~~kpVia~v~--g~a~s~gy~la~~- 91 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASE---V----IRAELAAARAAGKPVVVSAG--GAAASGGYWISTP- 91 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHH---H----HHHHHHHHHhCCCCEEEEEC--CeehhHHHHHHHh-
Confidence 467778888888764 6665555 777774432221 1 23456778888999999998 444 556666665
Q ss_pred ccCCccceeecccCcEEEeeCcc
Q 000086 2062 RINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|. +||.|++++|.++.-
T Consensus 92 ---aD~--i~a~~~a~~gsiGv~ 109 (211)
T cd07019 92 ---ANY--IVANPSTLTGSIGIF 109 (211)
T ss_pred ---CCE--EEEcCCCEEEEeEEE
Confidence 366 999999999877743
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.053 Score=58.66 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=45.0
Q ss_pred ceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe---eC--CCCccCC----CCEEEEEecCCCCc
Q 000086 696 CKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---MA--EGQAMQA----GELIARLDLDDPSA 761 (2304)
Q Consensus 696 Gkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i---~~--~G~~v~~----G~~La~l~~~~~~~ 761 (2304)
|.|+.+.. ++|++|++|++++.||+.|...++.||.+|+|..+ +. |+ .++. .-=|+.|.+.++..
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~-lln~~p~~~gWl~~i~~~d~~~ 105 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPE-LLNSDPYGDGWLIKIKPSDPEE 105 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TT-HHHHSTTTTTEEEEEEESCGGG
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChH-HhccCCCCCCeEEEEEeCCHHH
Confidence 55655544 55999999999999999999999999999999887 22 32 3322 23478888776543
|
GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B .... |
| >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.083 Score=51.61 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
-...|+||++|+|.++++++||.|+.|++|++|+
T Consensus 38 ~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 38 MEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred ceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999984
|
|
| >PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.095 Score=54.92 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=35.7
Q ss_pred EEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 699 LRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 699 v~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.+..|++||+|++||.|++-+. -|..+|.||.+|+|+.|
T Consensus 42 ~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I 80 (101)
T PF13375_consen 42 AEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAI 80 (101)
T ss_pred ceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEE
Confidence 4579999999999999999986 66889999999999988
|
|
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.46 Score=55.92 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=63.1
Q ss_pred CccC---HHHHHHHHHHHHHhhcc-CCC-EEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1979 QVWF---PDSATKTAQALMDFNRE-ELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1979 g~~~---p~sa~K~a~~i~~~~~~-~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
|.+. +.+.....++++.+... ++- |++-.|++|.+.... ......+..+..++.|+++++- +-++.|
T Consensus 9 g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~-g~~~s~ 80 (208)
T cd07023 9 GTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMG-DVAASG 80 (208)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEEC-CcchhH
Confidence 4554 67888889999988653 444 455578777443221 2234567778888999999998 223445
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
|.|+++. +|. +||.|++.+|..|.-.
T Consensus 81 g~~lA~a----aD~--i~a~~~s~~g~iG~~~ 106 (208)
T cd07023 81 GYYIAAA----ADK--IVANPTTITGSIGVIG 106 (208)
T ss_pred HHHHHhh----CCE--EEECCCCeEEeCcEEE
Confidence 6666665 466 8999999998876533
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.18 Score=55.11 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=63.0
Q ss_pred eeeEeecCeEEEEEEEeeCCCeEEEe-----e-CCeE--EEEE----EEE---ecCCc--eEEEeCCeeEEEEeeecccc
Q 000086 607 QVSLNIEGSKYRIDMVRRGPGSYTLR-----M-NESE--IEAE----IHT---LRDGG--LLMQLDGNSHVVYAEEEAAG 669 (2304)
Q Consensus 607 ~vel~~~g~~y~v~v~~~~~~~y~l~-----i-ng~~--~~V~----v~~---l~dg~--l~v~~~G~s~~v~~~ee~~~ 669 (2304)
.+.+.+||+.|.|++...+...-..- . .... -... ... ...|. +...+.|+...+++.+ +
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~---G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAV---G 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCccccccccCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCC---C
Confidence 36778899999999988653310000 0 0000 0000 000 11122 3344566666555543 2
Q ss_pred eEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 670 ~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
-.+..+..-+.++...-...|.||..|+|.+++|++||.|+.||+|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 2222222223333334456899999999999999999999999999987
|
|
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.76 Score=53.59 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=95.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.++...+..+...+-+... ..-||.+..|+|| |..-+|-.|.+.+..-+.|+.|++. |-+.. |
T Consensus 33 ~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG----------G~V~aG~AIydtm~~ik~~V~ti~~--G~AaSmg 100 (200)
T COG0740 33 GGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPPVSTICM--GQAASMG 100 (200)
T ss_pred eeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC----------cccchhHHHHHHHHhcCCCeEEEEe--cHHHhHH
Confidence 345555555555554444444 4689999999999 5666888999999999999999999 44333 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2134 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 2134 (2304)
+.+.+...-+ . -|+.|+|++=+=-|.|.+. =...|+...++.++..-..|.+-+++.. ..+.++ + ++..
T Consensus 101 s~l~~aG~~g--~--r~~lPnsrimIHqP~gg~~--G~a~Di~i~A~ei~~~~~~l~~i~a~~T-Gq~~e~---i-~~d~ 169 (200)
T COG0740 101 SVLLMAGDKG--K--RFALPNARIMIHQPSGGAQ--GQASDIEIHAREILKIKERLNRIYAEHT-GQTLEK---I-EKDT 169 (200)
T ss_pred HHHHhcCCCC--C--ceeCCCceEEEecCCccCc--cCHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHH---H-HHhh
Confidence 6666665322 2 4788999998888886531 0011222222222222222222222221 112221 1 1122
Q ss_pred HHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccc
Q 000086 2135 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2175 (2304)
Q Consensus 2135 ~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~ 2175 (2304)
+|+ ..=++..+++-|+||.|+...+
T Consensus 170 drd----------------~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 170 DRD----------------TWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred ccc----------------ccCCHHHHHHcCCcceeccccc
Confidence 222 3346889999999999997654
|
|
| >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.084 Score=58.48 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
=.+.|.||..|+|.+++|++||.|+.||+|++|+
T Consensus 106 meneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 106 MENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 3567999999999999999999999999999997
|
|
| >cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.17 Score=63.43 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=54.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
..|+||.+| ++...++.||.|++||+|++|--+ ....+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~-~~~~~v~~G~~l~~i~~ 315 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR-RPPGLVRRGDCLAVLAA 315 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe-eCCCccCCCCEEEEEec
Confidence 469999999 556889999999999999998654 44678999999988654 23356999999998753
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.18 Score=67.91 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=65.6
Q ss_pred ceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEE-E----ec-CCceEEEeCCeeEEEEeeecccceEEEEeCce
Q 000086 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIH-T----LR-DGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2304)
Q Consensus 605 ~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~-~----l~-dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t 678 (2304)
...+.+.+||+.|.+++...++- -.+...+....+... . .. ...+...+.|....+.+++ +-.+..+..-
T Consensus 477 ~~~~~~~vnG~~~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~---Gd~V~~Gd~l 552 (593)
T PRK14040 477 SETYTVEVEGKAYVVKVSEGGDI-SQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTE---GQTVAEGDVL 552 (593)
T ss_pred CeEEEEEECCEEEEEEECCCCcc-ccccccccccccccccccccCCCCCceEECCccEEEEEEEeCC---CCEeCCCCEE
Confidence 45688899999999999765421 123333322221110 0 01 1234445566655554432 1122222222
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
+.++...-.+.|.||.+|+|.++.|++||.|+.||+|++|
T Consensus 553 ~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 553 LILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred EEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 2333333346799999999999999999999999999987
|
|
| >COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.086 Score=57.08 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=41.5
Q ss_pred eeCCCceeEEE-EccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 691 VAETPCKLLRY-LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 691 ~APmPGkvv~~-~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
..-+-|.|+-+ +.++|++|++|+++++||+-|-..+|.||.+|+|..+
T Consensus 34 aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 34 AQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred HHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 34456777776 4578999999999999999999999999999999776
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.33 Score=70.04 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=83.9
Q ss_pred eEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeec
Q 000086 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2304)
Q Consensus 650 l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~a 729 (2304)
+.+.+||+.+.|.+.+...... ..........++..|.|||||+|++|+|++||.|++||+|++||+||||++|.|
T Consensus 1043 ~~~~vnG~~~~V~v~d~~~~~~----~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~A 1118 (1146)
T PRK12999 1043 VYFELNGQPREVQVRDRSVKST----VAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITA 1118 (1146)
T ss_pred EEEEECCEEEEEEEecCccccc----cccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEec
Confidence 5566777777777655432111 111112345667899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 730 PASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 730 p~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
|.+|+|+.+ +++|+.|+.|++|++|++
T Consensus 1119 p~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1119 PVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 999999999 999999999999999863
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.38 E-value=1 Score=53.59 Aligned_cols=96 Identities=19% Similarity=0.103 Sum_probs=63.1
Q ss_pred HHHHH-HHHHHHhhc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-hhhhhccc
Q 000086 1985 SATKT-AQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GAWVVVDS 2061 (2304)
Q Consensus 1985 sa~K~-a~~i~~~~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-Ga~vv~~~ 2061 (2304)
.+..+ ++.+.+... ..-|+-+..|++|-+.-. .+--|..-.|-.|.+++...+-|+.+++. |-+.+ ++.+.++.
T Consensus 53 ~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~-G~~iG~v~~glaIyD~m~~ik~~V~Tv~~--G~AaS~AslIl~aG 129 (222)
T PRK12552 53 VTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYT-GDAIGFETEAFAICDTMRYIKPPVHTICI--GQAMGTAAMILSAG 129 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccc-cccccccccHHHHHHHHHhcCCCeEEEEE--eehhhHHHHHHhCC
Confidence 55554 455555433 368999999999922100 01112345677899999999999999999 77766 44444443
Q ss_pred ccCCccceeecccCcEEEeeCccchh
Q 000086 2062 RINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
+- .. .+|.|+|++-+-.|.+.+
T Consensus 130 ~k--g~--R~alpns~iMIHqP~~~~ 151 (222)
T PRK12552 130 TK--GQ--RASLPHATIVLHQPRSGA 151 (222)
T ss_pred CC--Cc--eecCCCcEEEeccCCccc
Confidence 21 12 678899999998887653
|
|
| >cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.19 Score=62.49 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM---Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
...|+||.+| ++...++.||.|++||+|++|=-. ....+++||.+|+|-.+ ...-.|.+|++|+.|
T Consensus 229 ~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~-~~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL-REYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe-ecCCeecCCceEEEe
Confidence 3468999999 556779999999999999999552 34678999999998665 334678999999876
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.22 Score=59.98 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=72.7
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhh
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2058 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv 2058 (2304)
+.+..+.+...-|+|+...+. .|+..+.+|+| |...+.-+|+.++..+..|+.++|+ +-..-||+.++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~-~~IdLii~TpG----------G~v~AA~~I~~~l~~~~~~v~v~VP-~~A~SAGTlIA 137 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKD-KPIDLIIHTPG----------GLVDAAEQIARALREHPAKVTVIVP-HYAMSAGTLIA 137 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCC-CceEEEEECCC----------CcHHHHHHHHHHHHhCCCCEEEEEC-cccccHHHHHH
Confidence 466778888999999998764 48988899999 5666778899999999999999887 45566788888
Q ss_pred cccccCCccceeecccCcEEEeeCcc
Q 000086 2059 VDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2059 ~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
++. |- +++.|+|.+|.++|.
T Consensus 138 LaA----De--IvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 138 LAA----DE--IVMGPGAVLGPIDPQ 157 (285)
T ss_pred HhC----Ce--EEECCCCccCCCCcc
Confidence 875 54 899999999999994
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.3 Score=51.10 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=68.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchhhh-----------hhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..+.+.......++++.+.+ ..+-+|+|...++ |+.|..-. .....+....++..+..+++|+|+.|
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58889999999999999987 5677777776544 67775421 23455667788888999999999999
Q ss_pred cCCCcCCchh-hhhcccccCCccceeecccCcEEEeeC
Q 000086 2046 PMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2046 ~~~ge~~GGa-~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
- |.+.||+ .+++. .|+ .++.++++++.-+
T Consensus 101 ~--G~a~g~G~~la~~----~D~--~i~~~~~~~~~pe 130 (195)
T cd06558 101 N--GAALGGGLELALA----CDI--RIAAEDAKFGLPE 130 (195)
T ss_pred C--CeeecHHHHHHHh----CCE--EEecCCCEEechh
Confidence 8 5555644 44443 466 7777777766544
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.18 Score=58.01 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=36.5
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
+|++++|.|.+.++|++++..||+++|.+++.|+..||-
T Consensus 59 ~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v 97 (178)
T cd07021 59 IPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI 97 (178)
T ss_pred CCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE
Confidence 599999999999999999999999999999999988864
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.53 Score=53.67 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=60.9
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEE-----------------------EeCCCCCCCHHH
Q 000086 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII-----------------------EEGPITVAPLET 325 (2304)
Q Consensus 269 ~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKii-----------------------eeaPa~~l~~e~ 325 (2304)
....||||+-| -++-++.|...--+-+-+.+-| ||+|--+ ..-|++ +.+.+
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D----~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESL 94 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGID----RRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESL 94 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEE----EEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGG
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeee----eEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhh
Confidence 57899999987 5777887765544444444433 3333211 122444 56677
Q ss_pred HHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 326 VKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 326 ~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
.+++.+++.+++++. |..|++++|.++++ +.++++.|+.+|+.++
T Consensus 95 L~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~-dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 95 LPKVFEMGERFVEASKELVPPGMIGPFCLQSIVTD-DLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE-T-TSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccceEEEEEcC-CceEEEEEEeccccCC
Confidence 788888888877765 88899999999994 7899999999999764
|
Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A. |
| >PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.6 Score=57.68 Aligned_cols=228 Identities=18% Similarity=0.184 Sum_probs=134.4
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHC
Q 000086 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2304)
Q Consensus 104 e~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~a 183 (2304)
..|.||..+ .+.+-|.+.+|....--||-....+-++.....+++ +++...+ -.-++..++...
T Consensus 47 ~~Y~VP~~T---------L~~~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L--~~~~a~a-----P~GW~~~fa~~~ 110 (355)
T PF11379_consen 47 PPYFVPDDT---------LVGAQAARLGIRGEQDLFGGVVPHAFVATKAITHPL--VGPDAAA-----PAGWSPAFAERV 110 (355)
T ss_pred ceeecCCcc---------hhhhHHHHcCCCChHhccCCCcCcceeeeccccCcC--CCCCCCC-----CCCcCHHHHHHH
Confidence 477887532 233678888887777777766666666666655653 2222111 111222333332
Q ss_pred CCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhcc--CCcEEEeecCCCCCcCeEEECCHHHHHHHHHH
Q 000086 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV--GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261 (2304)
Q Consensus 184 GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I--GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~ 261 (2304)
.=-+.|.. ++.|.+|+..++..+ +-||=+||..+.||+|-.++.+.++|..++..
T Consensus 111 ~~~vL~G~-----------------------tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~ 167 (355)
T PF11379_consen 111 RDAVLPGY-----------------------TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAA 167 (355)
T ss_pred hhhccCCc-----------------------cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHc
Confidence 22233322 378999999888764 67999999999999999999999999999987
Q ss_pred HHhhC-CCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc-cceEEEeC------------CCCCCCHHHHH
Q 000086 262 VQGEV-PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR-HQKIIEEG------------PITVAPLETVK 327 (2304)
Q Consensus 262 ~~~e~-~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr-~qKiieea------------Pa~~l~~e~~~ 327 (2304)
+-... ....+.+|+-++...-+||--+.-. |..++.++..|....+ .+++...+ -...+++.++.
T Consensus 168 ~~~~~l~~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~ 246 (355)
T PF11379_consen 168 LDDAELARHGLVLEEDLEEVVTYSVGQVRVA-GLVASYYGTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRL 246 (355)
T ss_pred CCHHHHHhCCEEEecccCCCceeeEEEEEEC-CEEEEEeeEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHH
Confidence 64322 2468999999988878888654432 5667776655544332 23443322 12335565555
Q ss_pred HHHHHHHHH----HHHC-Cce-eeeEEEEEEEc-cCCcE--EEEEeccCCCCCc
Q 000086 328 KLEQAARRL----AKCV-NYV-GAATVEYLYSM-ETGEY--YFLELNPRLQVEH 372 (2304)
Q Consensus 328 ~m~e~A~rl----akal-Gy~-Ga~tVEfl~d~-~~g~~--yfLEINpRlqgeh 372 (2304)
.++++ ... .... |+. +--+-|..... ..|.. =+||=.-|++|..
T Consensus 247 AV~qA-~~Yd~Aa~~~yPgf~ASRRNYDVa~G~da~G~~r~GVLEQSWRvGGAS 299 (355)
T PF11379_consen 247 AVEQA-RAYDAAAQACYPGFFASRRNYDVAQGLDAQGRWRSGVLEQSWRVGGAS 299 (355)
T ss_pred HHHHH-HHHHHHHHHhCchhheeeccceeeeccCCCCCeeeceeeeeeccCCCC
Confidence 54432 221 1111 221 22223332221 13333 3789888988754
|
|
| >COG3608 Predicted deacylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.21 Score=62.04 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=53.7
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM---Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~ 755 (2304)
...++||-.| ++.++|+.||.|++||+|+.|=.+ +-+.+|+|+.+|+|-.....+ .+++|+.+..+.
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~-~v~~Gdl~~~v~ 325 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR-LVQPGDLLKVVG 325 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc-ccCCCCeeeeec
Confidence 3469999999 678999999999999999999887 788899999999996552222 355567776654
|
|
| >cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.25 Score=61.13 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=51.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc--ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM--Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
..++||.+|.+. ..++.||.|++||+|+.|.-. ....+|+||.+|+|.. ....-.|.+|+.|+.|
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~-~~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG-RNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE-ecCCCccCCCCEEEEe
Confidence 469999999765 689999999999999999541 1236899999999944 4455578899999876
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.9 Score=51.55 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhh--------hhhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL--------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e--------~~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
..++++......++++.+. ...-+|++.-.+ .|+.|..-. .....+.+..++..+..+..|+|+.|- |
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~--G 100 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACT--G 100 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEc--C
Confidence 4788999999999999887 455666666543 377775311 112334455677888899999999988 5
Q ss_pred cCCc-hhhhhcccccCCccceeecccC-cEEEe
Q 000086 2050 ELRG-GAWVVVDSRINSDHIEMYADRT-AKGNV 2080 (2304)
Q Consensus 2050 e~~G-Ga~vv~~~~i~~d~~~~~A~p~-A~~gv 2080 (2304)
-+.| |.-+++. .|+ ++|.++ ++++.
T Consensus 101 ~a~GgG~~lal~----~D~--rva~~~~a~f~~ 127 (229)
T PRK06213 101 HAIAKGAFLLLS----ADY--RIGVHGPFKIGL 127 (229)
T ss_pred eeeHHHHHHHHh----CCe--eeEecCCcEEEC
Confidence 5555 4444554 466 788887 77765
|
|
| >TIGR02994 ectoine_eutE ectoine utilization protein EutE | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.27 Score=61.75 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=53.5
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
..-++||.+|.+ ...++.||.|++||+|++|=-. ....+++||.+|+|-.. ...-.|..|+.|+.|
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~-~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR-HFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE-eCCCccCCCCEEEEe
Confidence 346999999955 5889999999999999999653 24678999999998664 344678889998876
|
Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. |
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=92.66 E-value=2.7 Score=50.63 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh---------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
...++++......++++.++. .++-+|++.-.+ .|+.|..- ......+....++..+..+..|+|+.|-
T Consensus 19 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 98 (245)
T PF00378_consen 19 RNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN 98 (245)
T ss_dssp TTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence 468899999999999999977 455567665544 37777642 2234456678889999999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 99 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 125 (245)
T PF00378_consen 99 --GHAVGGGFELALA----CDF--RIAAEDAKFGF 125 (245)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTTEEET
T ss_pred --ccccccccccccc----cce--EEeecccceee
Confidence 55555 4444444 477 88888888665
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.85 Score=54.31 Aligned_cols=101 Identities=24% Similarity=0.242 Sum_probs=74.7
Q ss_pred cccccccCCCccCHHHHH-HHHHHHHHh-hccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1970 HERVVPQAGQVWFPDSAT-KTAQALMDF-NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1970 ~~~~~~~~gg~~~p~sa~-K~a~~i~~~-~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.|+++-- ||.+.++-+. =+||++-+- .....||..+.|+|| |.+-+|-.|.|.+.-.+-|+-|+.+
T Consensus 91 reRIi~l-g~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG----------G~vtaglAIYDtMq~ik~~V~Tic~- 158 (275)
T KOG0840|consen 91 RERIVFL-GQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPDVSTICV- 158 (275)
T ss_pred Hhheeee-CCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC----------CccchhhhHHHHHHhhCCCceeeeh-
Confidence 3444433 6777776554 467777765 347899999999999 3345777899999999999999999
Q ss_pred CCcCCc-hhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2048 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2048 ~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
|-+.+ ||++....+-+ . -||-|++|+-+--|.|.+
T Consensus 159 -G~Aas~aalLLaaG~KG--~--R~alPnsriMIhQP~gga 194 (275)
T KOG0840|consen 159 -GLAASMAALLLAAGAKG--K--RYALPNSRIMIHQPSGGA 194 (275)
T ss_pred -hhHHhHHHHHHhcCCCc--c--eeecCCceeEEeccCCCc
Confidence 77777 56555554443 2 589999999999998874
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.2 Score=60.61 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=59.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |...+.+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~e-A~~ 172 (249)
T PRK07110 94 PIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAE-LKK 172 (249)
T ss_pred CCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 3699999999999999999999999999988653 322 2233555555322 11233444444 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.|++|.++++ .+..+.+.++..-+
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~l 196 (249)
T PRK07110 173 RGVPFPVLPR-AEVLEKALELARSL 196 (249)
T ss_pred cCCCeEEeCh-HHHHHHHHHHHHHH
Confidence 9999999974 45566666665433
|
|
| >PRK06748 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.21 Score=50.50 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...+.||..|+|.+++|++||.|..||+|+.|+.
T Consensus 42 ~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 42 KVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred eEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 3579999999999999999999999999999974
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.69 Score=66.67 Aligned_cols=125 Identities=16% Similarity=0.352 Sum_probs=100.2
Q ss_pred CeEEEee-CCeEEEEEEEEec----CC--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeE
Q 000086 627 GSYTLRM-NESEIEAEIHTLR----DG--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLL 699 (2304)
Q Consensus 627 ~~y~l~i-ng~~~~V~v~~l~----dg--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv 699 (2304)
..+.+.+ .|+.+.|++...+ +| .+.+.+||+.+.+.+.+..... .+.........+++.|.|||||+|+
T Consensus 1011 ~e~~v~~~~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~----~~~~~~KAd~~~~~~I~a~~~G~v~ 1086 (1143)
T TIGR01235 1011 EEIEVDIEKGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKA----EAAVRRKADPGNPAHVGAPMPGVII 1086 (1143)
T ss_pred cEEEEEecCCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccc----ccccccccccccCceeecCCCcEEE
Confidence 4567777 5887777665432 23 3457789999988887653211 1222223345678899999999999
Q ss_pred EEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 700 RYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 700 ~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+|+|++||.|++||+|++||||||+++|.||.+|+|+++ +++|+.|+.|++|++|+
T Consensus 1087 ~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1087 EVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 999999999999999999999999999999999999999 99999999999999885
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.37 Score=61.41 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=51.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc-cc---cceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV-MK---MCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa-MK---m~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l 754 (2304)
...++||-.| ++...++.||.|++||+|++|=- .. -+.+|+||.+|+|-. ....-.|.+|+.|+.|
T Consensus 289 ~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~-~~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA-RASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE-ecCCccccCCCeEEEe
Confidence 3469999999 55688999999999999999943 21 222369999999754 4556688999999876
|
This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding |
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.2 Score=59.69 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=59.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+.+.+|... .-+...+.+.+ ...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~e-A~~ 177 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEE-ALA 177 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 369999999999999999999999999998865443 2 2334555666432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+.+|..
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~ 199 (222)
T PRK05869 178 LGLIDEMVAPD-DVYDAAAAWAR 199 (222)
T ss_pred CCCCCEeeCch-HHHHHHHHHHH
Confidence 89999999754 56666666654
|
|
| >cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.31 Score=60.34 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=47.6
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc--cccceeeecCCCcEEEEeeCCCCccCCCCEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV--MKMCMPLLSPASGVLQFKMAEGQAMQAGELI 751 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa--MKm~~~l~ap~~G~V~~i~~~G~~v~~G~~L 751 (2304)
+...++||.+| ++...++.||.|++||+|++|=- -....+|+||.+|+|-.+-. .-.|.+|+.|
T Consensus 222 ~~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~-~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA-TLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC-CCccCCCCcc
Confidence 34679999999 56688999999999999999922 13466899999999865511 2345555554
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.18 Score=61.19 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecChH-HHHHhhcccc----cccccccCcceeecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS-ALNKLLGREV----YSSHMQLGGPKIMATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG~~-al~~~lG~~v----y~s~~~lGG~~i~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.|+. .+.+.+|... .-+.+.+.+.+ ...-|+
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~lll~g~~~~a~e-A~~~GL 175 (257)
T PRK06495 97 AKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPAAE-LYRRGV 175 (257)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHHHHhCHHHHHHHHHcCCeeCHHH-HHHcCC
Confidence 369999999999999999999999999998864 4555543 3555566322 11222233322 346899
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
++.++++ .+..+.+.+|..
T Consensus 176 v~~vv~~-~~~~~~a~~~a~ 194 (257)
T PRK06495 176 IEACLPP-EELMPEAMEIAR 194 (257)
T ss_pred cceecCH-HHHHHHHHHHHH
Confidence 9999975 444555555543
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.2 Score=60.82 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=56.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---C-hHHHHHhhcc----cccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---G-FSALNKLLGR----EVYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G-~~al~~~lG~----~vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . | ..-+-+.+|. ++.-+...+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 170 (255)
T PRK06563 92 SKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQE-ALR 170 (255)
T ss_pred CCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHH-HHH
Confidence 369999999999999999999999999998875433 1 1 2223444553 2212233444443 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 171 ~Glv~~vv~~~-~l~~~a~~~a 191 (255)
T PRK06563 171 LGLVQEVVPPG-EQLERAIELA 191 (255)
T ss_pred cCCCcEeeCHH-HHHHHHHHHH
Confidence 89999999764 4444444443
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.21 Score=61.11 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |..-+-..+|... .-+.+.+. ++-...
T Consensus 109 ~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~-a~eA~~ 187 (272)
T PRK06142 109 RKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDID-AAEAEK 187 (272)
T ss_pred CCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcC-HHHHHH
Confidence 3699999999999999999999999999998754 332 2222334444221 11112222 222457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.++++.++..+.+.+|.
T Consensus 188 ~GLv~~vv~~~~~l~~~a~~~a 209 (272)
T PRK06142 188 IGLVNRVYDDADALLAAAHATA 209 (272)
T ss_pred cCCccEecCCHHHHHHHHHHHH
Confidence 9999999976444445555554
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.25 Score=60.04 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=57.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+. -....
T Consensus 96 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~a~-eA~~~ 174 (255)
T PRK07112 96 PYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQ-QAFSW 174 (255)
T ss_pred CCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCcccHH-HHHHc
Confidence 369999999999999999999999999998876444 2 1122333344322 1111222222 23469
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
|++|.+++++++.+..+.+-++-.|
T Consensus 175 Glv~~vv~~~~~~~~~~a~~l~~~~ 199 (255)
T PRK07112 175 GLVDAYGANSDTLLRKHLLRLRCLN 199 (255)
T ss_pred CCCceecCcHHHHHHHHHHHHHhCC
Confidence 9999999876655555444454443
|
|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.64 Score=60.33 Aligned_cols=192 Identities=15% Similarity=0.253 Sum_probs=109.3
Q ss_pred HHhcCCCCCccEEEEECc---h--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000086 39 CRSLGGKKPIHSILIANN---G--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2304)
Q Consensus 39 ~~~~~g~~~~~kILIan~---G--~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~ 113 (2304)
.+..+|..-.-+|.|..- + .-=....+..++.||.++ |+.+.| +++.|......+..
T Consensus 176 y~~~~~~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~v----------I~d~~~-------L~y~~g~L~~~~~~- 237 (445)
T PF14403_consen 176 YRTFGGRVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCV----------ICDPRD-------LEYRDGRLYAGGRP- 237 (445)
T ss_pred HHHhcCcCCCCcEEEEecccCCccchHHHHHHHHHHcCCceE----------ecChHH-------ceecCCEEEECCEe-
Confidence 445666555567777752 1 112356677788999875 344443 33455555543322
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCC-------
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVP------- 186 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVP------- 186 (2304)
+|.|-.-+-... +++-|+ +...|.++..+..+.++|| -..+.++||..+..+-....-.
T Consensus 238 ------ID~VyRR~Vt~e---~l~~~d---~~~~li~Ay~~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~ee~ 303 (445)
T PF14403_consen 238 ------IDAVYRRFVTSE---LLERYD---EVQPLIQAYRDGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAEER 303 (445)
T ss_pred ------eehhhHhhhhHH---hhhccc---cchHHHHHHhcCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHHHH
Confidence 344443332221 222222 3344666666667777765 4568888998888776654322
Q ss_pred -----cCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEE--CCHHHHHHHH
Q 000086 187 -----TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV--HNDDEVRALF 259 (2304)
Q Consensus 187 -----tpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V--~s~eEL~~a~ 259 (2304)
.+||... ++ .+. -.|+. ..-++.+++..-.=-+||||.++.||+||.+= .++++..+++
T Consensus 304 ~~I~~HvP~T~~---l~--~~~-----~~~~g----~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l 369 (445)
T PF14403_consen 304 AFIRRHVPWTRL---LT--AGR-----TTYQG----EDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAAL 369 (445)
T ss_pred HHHHHhCCceEE---Ec--Ccc-----ccccc----cchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHH
Confidence 2334320 00 000 00000 11233333333334579999999999999974 5788889888
Q ss_pred HHHHhhCCCCcEEEEEecccc
Q 000086 260 KQVQGEVPGSPIFIMKVASQS 280 (2304)
Q Consensus 260 ~~~~~e~~~~~i~VEeyI~g~ 280 (2304)
+++. +.++++|||+.-.
T Consensus 370 ~~a~----~~~yilQe~v~~~ 386 (445)
T PF14403_consen 370 EEAA----REPYILQEYVRPP 386 (445)
T ss_pred HHHh----cCCcEEEEEecCC
Confidence 8876 4599999999653
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.2 Score=61.13 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=59.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec---ChHHHHHhhccc----ccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGRE----VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt---G~~al~~~lG~~----vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++. +++. |...+-+.+|.. +.-+.+.+.+.+ ...-|
T Consensus 102 kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~~G 180 (265)
T PRK05674 102 IPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRR-ARELG 180 (265)
T ss_pred CCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHH-HHHCC
Confidence 69999999999999999999999999998865 3333 222344445532 222333444444 45789
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
++|-++++ .+..+.+.+|..-+
T Consensus 181 lv~~vv~~-~~l~~~a~~~a~~l 202 (265)
T PRK05674 181 LLAESYPA-AELEAQVEAWIANL 202 (265)
T ss_pred CcceecCH-HHHHHHHHHHHHHH
Confidence 99999975 45666666665443
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.25 Score=60.02 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=56.0
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||+.++..||++|+.+++.+.+. |...+-+.+|.. +.-+.+.+.+.+ ....
T Consensus 99 kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~e-A~~~ 177 (255)
T PRK07260 99 KPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEK-ALEY 177 (255)
T ss_pred CCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHH-HHHc
Confidence 699999999999999999999999999999764431 222344444532 222233334333 3469
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+.+.++.
T Consensus 178 Glv~~vv~~~-~l~~~a~~~a 197 (255)
T PRK07260 178 GFVYRVAESE-KLEKTCEQLL 197 (255)
T ss_pred CCcceecCHh-HHHHHHHHHH
Confidence 9999999754 3444454443
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.34 Score=58.26 Aligned_cols=85 Identities=25% Similarity=0.170 Sum_probs=56.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccccccccccCccee----ecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREVYSSHMQLGGPKI----MAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~vy~s~~~lGG~~i----~~~ 1843 (2304)
..|+|+.|.|.|+|+|+.++..+|++|+.+++.+.+.. -..+.+.+|..... ..-+-|-.+ ...
T Consensus 90 ~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~-~l~l~g~~~~a~eA~~ 168 (245)
T PF00378_consen 90 PKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRAR-ELLLTGEPISAEEALE 168 (245)
T ss_dssp SSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHH-HHHHHTCEEEHHHHHH
T ss_pred hhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccc-ccccccccchhHHHHh
Confidence 36999999999999999999999999999998755321 12344444432210 011122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.++++++ ..+.++++.
T Consensus 169 ~Glv~~v~~~~~-l~~~a~~~a 189 (245)
T PF00378_consen 169 LGLVDEVVPDEE-LDEEALELA 189 (245)
T ss_dssp TTSSSEEESGGG-HHHHHHHHH
T ss_pred hcceeEEcCchh-hhHHHHHHH
Confidence 999999998766 444444443
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.25 Score=56.94 Aligned_cols=87 Identities=22% Similarity=0.156 Sum_probs=58.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+++.|.|.|+|+.++..+|++|+.+++.+.+-. ...+.+.+|... .-+...+- ++-...
T Consensus 93 ~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~-a~ea~~ 171 (195)
T cd06558 93 PKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRIS-AEEALE 171 (195)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccC-HHHHHH
Confidence 47999999999999999999999999999987654322 122233333322 11122222 222457
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
.|++|.++++ .+..+.+.+|...
T Consensus 172 ~Glv~~~~~~-~~l~~~a~~~a~~ 194 (195)
T cd06558 172 LGLVDEVVPD-EELLAAALELARR 194 (195)
T ss_pred cCCCCeecCh-hHHHHHHHHHHhh
Confidence 9999999975 6677777777643
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.36 Score=58.79 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..+|++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 98 ~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~ 176 (260)
T PRK07511 98 PKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER-LHA 176 (260)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 469999999999999999999999999999976443 2 1122444445322 11223344433 357
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+.+|..
T Consensus 177 ~Glv~~vv~~~-~~~~~a~~~a~ 198 (260)
T PRK07511 177 LGVVNRLAEPG-QALAEALALAD 198 (260)
T ss_pred cCCccEeeCch-HHHHHHHHHHH
Confidence 99999999754 44555555543
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.28 Score=59.98 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=59.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |...+.+.+|... .-+...+.+.+ ...
T Consensus 106 ~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (269)
T PRK06127 106 AKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAE-ALR 184 (269)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999764431 2223455555322 11222333332 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+....+++|...+
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~~l 208 (269)
T PRK06127 185 IGLVHRVTAA-DDLETALADYAATI 208 (269)
T ss_pred cCCCCEeeCH-HHHHHHHHHHHHHH
Confidence 8999999974 45666666665544
|
|
| >PF13437 HlyD_3: HlyD family secretion protein | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.29 Score=50.96 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=30.8
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
.|+||..|.|..+.++.|+.|.+|++|+.|..+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 489999999999999999999999999999864
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.34 Score=59.00 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 176 (261)
T PRK08138 98 PKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPE-ALA 176 (261)
T ss_pred CCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999886533 22 2233444455432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~ 198 (261)
T PRK08138 177 IGLVSEVVEDE-QTLPRALELAR 198 (261)
T ss_pred CCCCcEecCch-HHHHHHHHHHH
Confidence 89999999754 44555555543
|
|
| >PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.2 Score=49.47 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
......+.||.+|+|.++++++||.|..||+|+.|
T Consensus 40 ~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 40 MKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 33345799999999999999999999999999986
|
Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A .... |
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.36 Score=59.28 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=56.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 104 ~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~e-A~~ 182 (275)
T PRK09120 104 QKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRK-AAE 182 (275)
T ss_pred CCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHH-HHH
Confidence 369999999999999999999999999999876433 2 2233555555432 11223333222 457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|+++.+++++ +..+.+.+|.
T Consensus 183 ~Glv~~vv~~~-~l~~~a~~~a 203 (275)
T PRK09120 183 MGLVNESVPLA-QLRARTRELA 203 (275)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999754 3444444443
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.37 Score=58.78 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=56.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||.-++..||++|+.+++.+ ++. |...+...+|... .-+.+.+.+.+ ...
T Consensus 100 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 178 (263)
T PRK07799 100 TKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAE-AKE 178 (263)
T ss_pred CCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999998653 332 2223444455322 11223333322 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++. ..+.+++|..
T Consensus 179 ~Glv~~vv~~~~-l~~~a~~~a~ 200 (263)
T PRK07799 179 IGLIGHVVPDGQ-ALDKALELAE 200 (263)
T ss_pred cCCccEecCcch-HHHHHHHHHH
Confidence 899999997653 4445555543
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.32 Score=59.24 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=58.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|.. +.-+...+.+.+ ...
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 177 (262)
T PRK08140 99 PLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQ-AEQ 177 (262)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999987543 21 222344444532 111223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.|++|.+++++ +..+.+.+|..-+
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~i 201 (262)
T PRK08140 178 WGLIWRVVDDA-ALADEAQQLAAHL 201 (262)
T ss_pred cCCccEeeChH-HHHHHHHHHHHHH
Confidence 89999999754 4556666665443
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.25 Score=60.11 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 175 (259)
T TIGR01929 97 PKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQ-ALD 175 (259)
T ss_pred CCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHH-HHH
Confidence 3699999999999999999999999999988764432 2233455555322 11122222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a 196 (259)
T TIGR01929 176 MGLVNTVVPLA-DLEKETVRWC 196 (259)
T ss_pred cCCcccccCHH-HHHHHHHHHH
Confidence 89999999754 4455555554
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.36 Score=58.67 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=58.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||.-++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 93 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 171 (256)
T TIGR02280 93 PLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDART-AAS 171 (256)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 369999999999999999999999999999976542 1 1223444444431 11223344333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.+++++ +..+.+.+|..-
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a~~ 194 (256)
T TIGR02280 172 WGLIWQVVDDA-ALMDEAQALAVH 194 (256)
T ss_pred cCCcceeeChH-HHHHHHHHHHHH
Confidence 89999999754 555666665443
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.43 Score=58.58 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---C-hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---G-FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G-~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . | ..-+-..+|... .-+...+.+.+ ...
T Consensus 111 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~e-A~~ 189 (275)
T PLN02664 111 RKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSE-AKE 189 (275)
T ss_pred CCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 369999999999999999999999999999876433 2 1 112334444321 11222232222 346
Q ss_pred cCceEEEecC
Q 000086 1844 NGVVHLTVSD 1853 (2304)
Q Consensus 1844 nGv~d~~v~d 1853 (2304)
-|++|.++++
T Consensus 190 ~GLv~~vv~~ 199 (275)
T PLN02664 190 LGLVSRVFGS 199 (275)
T ss_pred cCCCceeeCC
Confidence 8999999975
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.36 Score=58.68 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=54.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 172 (257)
T PRK05862 94 RKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAE-AER 172 (257)
T ss_pred CCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 469999999999999999999999999998865432 2 2223444455421 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +..+.+++|.
T Consensus 173 ~Glv~~vv~~~-~l~~~a~~~a 193 (257)
T PRK05862 173 AGLVSRVVPAD-KLLDEALAAA 193 (257)
T ss_pred cCCCCEeeCHh-HHHHHHHHHH
Confidence 89999999754 4444444444
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.41 Score=57.98 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=55.9
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|... .-+...+.+.+ ...-
T Consensus 89 kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e-A~~~ 167 (251)
T PLN02600 89 IPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGARE-AASM 167 (251)
T ss_pred CCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHHc
Confidence 69999999999999999999999999999876433 1 2233444555321 11233344333 3468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+..+++.
T Consensus 168 Glv~~vv~~~-~~~~~a~~~a 187 (251)
T PLN02600 168 GLVNYCVPAG-EAYEKALELA 187 (251)
T ss_pred CCCcEeeChh-HHHHHHHHHH
Confidence 9999999754 3444444443
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.37 Score=58.06 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=57.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecC-cc-------eEecCh----HHHHHhhccc-----ccccccccCcceee
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QP-------IILTGF----SALNKLLGRE-----VYSSHMQLGGPKIM 1841 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~-------i~ltG~----~al~~~lG~~-----vy~s~~~lGG~~i~ 1841 (2304)
..|+|+.|.|.|+|||..++..||++|+.++ +. +++..| ..+-..+|.. +.-+...+.+.+ .
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~e-A 172 (239)
T PLN02267 94 PMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEE-A 172 (239)
T ss_pred CCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHH-H
Confidence 3699999999999999999999999999754 33 334312 2233344422 111122233222 4
Q ss_pred cccCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1842 ATNGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1842 ~~nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
...|++|.+++++.+..+.++++..-+
T Consensus 173 ~~~Glv~~vv~~~~~l~~~a~~~A~~i 199 (239)
T PLN02267 173 VEMGIVDSAHDSAEETVEAAVRLGEEL 199 (239)
T ss_pred HHCCCcceecCCHHHHHHHHHHHHHHH
Confidence 479999999976556666666665443
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.39 Score=58.19 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. |...+-+.+|... .-+...+++.+ ...
T Consensus 97 ~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e-A~~ 175 (251)
T PRK06023 97 EKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEA-AQE 175 (251)
T ss_pred CCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHH-HHH
Confidence 369999999999999999999999999998875 3332 1123444555321 11223344433 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.++++..
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a~ 197 (251)
T PRK06023 176 AGLIWKIVDEE-AVEAETLKAAE 197 (251)
T ss_pred cCCcceeeCHH-HHHHHHHHHHH
Confidence 89999999754 34444454443
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.41 Score=58.47 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=57.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|.. +.-+...+.+.+- ..
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA-~~ 181 (266)
T PRK05981 103 PCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETA-LQ 181 (266)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHH-HH
Confidence 46999999999999999999999999999987643 21 112233444432 2223344444443 36
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 182 ~Glv~~vv~~~-~~~~~a~~~a~ 203 (266)
T PRK05981 182 WGLVNRVVDDA-ELMAEAMKLAH 203 (266)
T ss_pred cCCceEeeCHh-HHHHHHHHHHH
Confidence 89999999754 55666666654
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.44 Score=58.01 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=57.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~e-A~~ 172 (259)
T PRK06494 94 DKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTARE-GLE 172 (259)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHH-HHH
Confidence 469999999999999999999999999998876443 1 2223444445322 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+++|..-+
T Consensus 173 ~GLv~~vv~~-~~l~~~a~~~a~~l 196 (259)
T PRK06494 173 LGFVNEVVPA-GELLAAAERWADDI 196 (259)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHHH
Confidence 8999999975 44555555554433
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.39 Score=58.31 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=55.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+.+.+ ....
T Consensus 93 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e-A~~~ 171 (255)
T PRK09674 93 KPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQ-AQQA 171 (255)
T ss_pred CCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 6999999999999999999999999999987543 22 2223444455322 11223333333 3468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.+++++ +..+.+++|..
T Consensus 172 Glv~~vv~~~-~~~~~a~~~a~ 192 (255)
T PRK09674 172 GLVSEVFPPE-LTLERALQLAS 192 (255)
T ss_pred CCCcEecChH-HHHHHHHHHHH
Confidence 9999999754 33444444433
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=89.27 E-value=19 Score=44.97 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=58.3
Q ss_pred CccCHHHHHHHHHHHHHhhc------cCCCEEEEecC--CCCCCchhh-hh---------hhHHHHHHHHHHHHH-----
Q 000086 1979 QVWFPDSATKTAQALMDFNR------EELPLFILANW--RGFSGGQRD-LF---------EGILQAGSTIVENLR----- 2035 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~------~~lPLv~l~d~--~Gf~~G~~~-e~---------~gilk~ga~iv~al~----- 2035 (2304)
-++.++......++++.+.+ ..+-+|+|.-. ..|+.|..- +. ..+......+.+.+.
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRG 117 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999998865 45666777654 237777541 11 111122222333222
Q ss_pred -cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2036 -TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2036 -~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+.+|+|+.|- |.+.+||.-+++.+ |+ .+|.++++++.
T Consensus 118 ~~~pkPvIAaV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~ 156 (287)
T PRK08788 118 FGAGAISIALVQ-GDALGGGFEAALSH----HT--IIAERGAKMGF 156 (287)
T ss_pred cCCCCCEEEEEC-CeeehHHHHHHHhC----CE--EEecCCCEeeC
Confidence 67899999998 34445555555553 66 77777777665
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.4 Score=58.21 Aligned_cols=88 Identities=20% Similarity=0.147 Sum_probs=57.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |..-+.+.+|... .-+...+.+.+ ...
T Consensus 96 ~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~e-A~~ 174 (259)
T PRK06688 96 PKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEE-ALR 174 (259)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999998876443 1 1222444444321 11122223222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+.+|..-+
T Consensus 175 ~Glv~~v~~~-~~l~~~a~~~a~~i 198 (259)
T PRK06688 175 IGLVNRVVPA-AELDAEADAQAAKL 198 (259)
T ss_pred cCCcceecCH-HHHHHHHHHHHHHH
Confidence 8999999974 45556666665443
|
|
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.4 Score=55.34 Aligned_cols=172 Identities=17% Similarity=0.115 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhccc
Q 000086 1982 FPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS 2061 (2304)
Q Consensus 1982 ~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~ 2061 (2304)
+.+...+..+.++.. ..--+|+...||||-++.... ..++.+..+..-+ |+++++. +=.+-||-|+++..
T Consensus 81 ~~~~~~~~l~~~~~~-~~vk~vvL~inSPGG~v~as~-------~i~~~l~~l~~~~-PV~v~v~-~~AASGGY~IA~aA 150 (317)
T COG0616 81 GGDDIEEILRAARAD-PSVKAVVLRINSPGGSVVASE-------LIARALKRLRAKK-PVVVSVG-GYAASGGYYIALAA 150 (317)
T ss_pred cHHHHHHHHHHHhcC-CCCceEEEEEECcCCchhHHH-------HHHHHHHHHhhcC-CEEEEEC-CeecchhhhhhccC
Confidence 344444444444433 245689999999994443221 2456666677777 9999888 45667777777764
Q ss_pred ccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHH----HHHHhhccCCHHHHHHHHHHHHHHH
Q 000086 2062 RINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMA----KLQEAKNNRTLAMVESLQQQIKARE 2137 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~re 2137 (2304)
|. +||+|+|.+|-+|+-.. .....+.|.+++......+. ...+.-.++++++++.+++.+.+..
T Consensus 151 ----d~--I~a~p~si~GSIGVi~~------~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y 218 (317)
T COG0616 151 ----DK--IVADPSSITGSIGVISG------APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETY 218 (317)
T ss_pred ----CE--EEecCCceeeeceeEEe------cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHH
Confidence 65 89999999999888554 22333444444321111000 0001113456677776666555442
Q ss_pred Hhh---------cchhhHHHHHhhhhcccHHHHHHcCCcceecCccch
Q 000086 2138 KQL---------LPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKS 2176 (2304)
Q Consensus 2138 ~~l---------~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~t 2176 (2304)
++. ++.+. +-.-+...|-+.....+.|.||++-.-.+.
T Consensus 219 ~~F~~~V~~~R~~~~~~-~~~~a~g~v~~g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 219 DEFVDKVAEGRGLSDEA-VDKLATGRVWTGQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHHHHHHHhcCCCChhH-HHHHhccceecHHHhhhcCCchhcCCHHHH
Confidence 211 11221 223333356667777788888877654443
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.5 Score=57.61 Aligned_cols=86 Identities=16% Similarity=0.032 Sum_probs=57.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-+.+|.. +.-+.+.+.+.+ ...
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 172 (258)
T PRK06190 94 RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAAD-ALR 172 (258)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999998876432 1 122244445532 212233344433 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 173 ~GLv~~vv~~~-~l~~~a~~~a~ 194 (258)
T PRK06190 173 AGLVTEVVPHD-ELLPRARRLAA 194 (258)
T ss_pred cCCCeEecCHh-HHHHHHHHHHH
Confidence 99999999744 44555555543
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.15 E-value=5.4 Score=48.74 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.++.++-.....++++.++. ..+-+|+|.-.. .|+.|.+-.. .........++.++..+.+|+|+.|-
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN- 102 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC-
Confidence 47888999999999998865 567778887654 3887764221 01111123456788899999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 103 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 129 (261)
T PRK03580 103 GYAFGGGFELALA----ADF--IVCADNASFAL 129 (261)
T ss_pred CeeehHHHHHHHH----CCE--EEecCCCEEeC
Confidence 3344445444444 366 66777666655
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.53 Score=59.27 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=57.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|... .-+..-+.+.+ ...
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~e-A~~ 239 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASE-ALK 239 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 3699999999999999999999999999999766542 2223445555322 11122222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +....+.+|..
T Consensus 240 ~GLV~~vv~~~-~l~~~a~~~a~ 261 (327)
T PLN02921 240 MGLVNTVVPLD-ELEGETVKWCR 261 (327)
T ss_pred CCCceEEeCHH-HHHHHHHHHHH
Confidence 89999999753 45555555543
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.83 Score=61.77 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=60.0
Q ss_pred ceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccC
Q 000086 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQND 684 (2304)
Q Consensus 605 ~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~ 684 (2304)
.+.+.|.+||+...+.+.......-.. .........+...+.|+...+.+.+ +-.+.-+..-+.++..
T Consensus 489 ~r~~~~~~ng~~~~v~v~d~~~~~~~~---------~~~~~~~~~V~Ap~~G~v~~~~V~~---Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 489 KRPFYLRVDGMPEEVVVEPLKEIVVGG---------RPRASAPGAVTSPMPGTVVKVKVKE---GDKVKAGDTVLVLEAM 556 (592)
T ss_pred cceEEEEecCceeeeeccCcccccccc---------cCCCCCCceEeCCCcEEEEEEEeCC---CCEECCCCEEEEEecc
Confidence 456677788888888775433211000 0001111223334455544444332 1122222222223333
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.-.+.|+||.+|+|.++.|++||.|..||+|++||
T Consensus 557 Kme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 557 KMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred ccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 34578999999999999999999999999999986
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.52 Score=58.75 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=56.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEe-cCcceEec-----------ChHHHHHhhccccc----ccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~-~~~~i~lt-----------G~~al~~~lG~~vy----~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |...+.+.+|.... -+.+.+.+.+ ..
T Consensus 135 pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~ 213 (302)
T PRK08321 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEE-AH 213 (302)
T ss_pred CCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HH
Confidence 36999999999999999999999999998 57654432 22235555564321 1222333333 24
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.++++ .+..+.+.+|..
T Consensus 214 ~~GLv~~vv~~-~~l~~~a~~~a~ 236 (302)
T PRK08321 214 DMGAVNAVVPH-AELETEALEWAR 236 (302)
T ss_pred HCCCceEeeCH-HHHHHHHHHHHH
Confidence 79999999975 445555555543
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.5 Score=57.38 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=55.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 91 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 169 (254)
T PRK08252 91 RKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAER-AHE 169 (254)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHH-HHH
Confidence 369999999999999999999999999999875432 2 1222333444322 11223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +..+.+.++.
T Consensus 170 ~Glv~~vv~~~-~l~~~a~~~a 190 (254)
T PRK08252 170 LGLVNRLTEPG-QALDAALELA 190 (254)
T ss_pred cCCcceecCcc-hHHHHHHHHH
Confidence 89999999754 4444444444
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.52 Score=56.81 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=58.5
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH---------------------HHHH-hhcccccccccccCc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS---------------------ALNK-LLGREVYSSHMQLGG 1837 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~---------------------al~~-~lG~~vy~s~~~lGG 1837 (2304)
-|.|+.+-|-++|||.-|+.+||++||.+++.+++..++ |++- ++|+.+ |
T Consensus 128 KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~--------~ 199 (290)
T KOG1680|consen 128 KPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRL--------G 199 (290)
T ss_pred cceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcc--------c
Confidence 499999999999999999999999999999998887763 2222 122322 1
Q ss_pred ceeecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1838 PKIMATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1838 ~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
++--.+-|++..|++. .+++....+|..-+-
T Consensus 200 AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia 230 (290)
T KOG1680|consen 200 AQEAKKIGLVNKVVPS-GDALGEAVKLAEQIA 230 (290)
T ss_pred HHHHHhCCceeEeecc-hhHHHHHHHHHHHHH
Confidence 2222368999999975 446666667665443
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=7.5 Score=47.40 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=62.9
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhh-hh--------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD-LF--------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~-e~--------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.++ ..+-+|+|.-.. .|+.|.+- +. ....+....++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-- 100 (255)
T PRK08150 24 NALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH-- 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 4788999999999999887 666677775532 47777641 11 11123345567788899999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 101 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 127 (255)
T PRK08150 101 GAVVGGGLELASA----AHI--RVADESTYFAL 127 (255)
T ss_pred CEEEcHHHHHHHh----CCE--EEEeCCCEEec
Confidence 55555 4444444 366 77777777765
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.49 Score=57.59 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=55.5
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+...+|.. +.-+...+.+.+ ...-
T Consensus 96 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~~ 174 (258)
T PRK09076 96 GVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAAT-ALRI 174 (258)
T ss_pred CCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHHC
Confidence 69999999999999999999999999998876443 2 222355555532 111223343333 3468
Q ss_pred CceEEEecCcHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~ 1864 (2304)
|++|.+++++ +..+.+.++
T Consensus 175 Glv~~vv~~~-~l~~~a~~~ 193 (258)
T PRK09076 175 GLVEEVVEKG-EAREAALAL 193 (258)
T ss_pred CCCceecCch-hHHHHHHHH
Confidence 9999999754 444444444
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.44 Score=58.20 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=56.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|.. +.-+.+.+.+.+ ...
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 181 (266)
T PRK09245 103 EVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAAT-ALE 181 (266)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999986543 32 222344444542 111223333322 447
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+++|.
T Consensus 182 ~Glv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK09245 182 WGLVSRVVPAD-QLLPAARALA 202 (266)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999754 4445555544
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.4 Score=58.38 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=55.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.++|||..++..||++|+.+++.+.+ . |...+...+|... .-+...+.+.+ ...
T Consensus 102 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~e-A~~ 180 (262)
T PRK07509 102 PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEE-ALE 180 (262)
T ss_pred CCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 469999999999999999999999999999975433 1 2223444445432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.++++..+....+.+-|
T Consensus 181 ~Glv~~vv~~~~~~a~~~a~~l 202 (262)
T PRK07509 181 LGLVTHVSDDPLAAALALAREI 202 (262)
T ss_pred cCChhhhhchHHHHHHHHHHHH
Confidence 9999999865444333333333
|
|
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.78 E-value=1.2 Score=54.76 Aligned_cols=209 Identities=17% Similarity=0.114 Sum_probs=122.5
Q ss_pred HHcCCCEEEeCCCcCC--CCCchH---HHHHHCCCeEECCCHHHHHHhcCHHHHHH----HHHHCC---CCcCCCCCCCc
Q 000086 128 EMTRVDAVWPGWGHAS--EIPELP---DTLSTKGIIFLGPPATSMAALGDKIGSSL----IAQAAN---VPTLPWSGSHV 195 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~S--En~~la---~~l~~~GI~fiGPs~eam~~lgDK~~sr~----laq~aG---VPtpp~s~~~~ 195 (2304)
+....|+|+.+-+-.+ +|.++. ..+...||+++ ++...+-..-||-+... +..+.| +|..+-..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--- 227 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--- 227 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee---
Confidence 5567888887754322 333443 45566899998 77777777777765543 334455 44433211
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
|. +. .+....-.||||||--.+-.|.|-.+|+|-+||.+.-.-+.-. ....-+|.
T Consensus 228 ---------------yP----nH----K~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~--~Tyat~ep 282 (488)
T KOG3895|consen 228 ---------------YP----NH----KEMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT--KTYATAEP 282 (488)
T ss_pred ---------------cC----Cc----hhhccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHHH--hhhhhccc
Confidence 10 00 1122234599999999999999999999999887644332211 12346778
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCH-HHHHHHHHHHHHHHHHCCceeeeEEEEEEEc
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPL-ETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~-e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~ 354 (2304)
||+..-.+.||-++..|...+-- ++- .|.|.-. .+..+.. ..-++-......+.+.+|---++.|+.+..
T Consensus 283 FiDaKYDiriQKIG~nYKaymRt-----sIs-gnWKtNt--GSamLEQIamseRyklwvdtcse~fGgldICav~alhs- 353 (488)
T KOG3895|consen 283 FIDAKYDIRIQKIGHNYKAYMRT-----SIS-GNWKTNT--GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHS- 353 (488)
T ss_pred cccccceeehhhhhhhHHHHhhh-----hhc-cCcccCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeec-
Confidence 88765677777777654322110 010 1212111 1110100 111223334555777888888899999998
Q ss_pred cCCcEEEEEeccC---CCCCcce
Q 000086 355 ETGEYYFLELNPR---LQVEHPV 374 (2304)
Q Consensus 355 ~~g~~yfLEINpR---lqgehpv 374 (2304)
++|+=|++|+|-- +=|||..
T Consensus 354 KdGrd~i~eV~d~smpliGeh~e 376 (488)
T KOG3895|consen 354 KDGRDYIIEVMDSSMPLIGEHQE 376 (488)
T ss_pred ccchhheeeeccccccccccchh
Confidence 6899999999973 3466643
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.49 Score=57.43 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=50.1
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecC---hHHHHHhhcccc----cccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG---FSALNKLLGREV----YSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG---~~al~~~lG~~v----y~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ...-|
T Consensus 90 kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~~G 168 (251)
T TIGR03189 90 VPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAE-GARIG 168 (251)
T ss_pred CCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHHCC
Confidence 69999999999999999999999999999865 44431 122333344321 11222233332 34699
Q ss_pred ceEEEecCcH
Q 000086 1846 VVHLTVSDDL 1855 (2304)
Q Consensus 1846 v~d~~v~dd~ 1855 (2304)
++|.++++++
T Consensus 169 lv~~v~~~~~ 178 (251)
T TIGR03189 169 LANAVAEDPE 178 (251)
T ss_pred CcceecCcHH
Confidence 9999997644
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.53 Score=57.27 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=56.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec----------ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|... .-+.+.+.+.+ ...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~~ 178 (256)
T PRK06143 100 PVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQ-ALAW 178 (256)
T ss_pred CCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HHHC
Confidence 3699999999999999999999999999988754321 1123444445321 11223333333 3468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.++++ .+..+.+.+|..
T Consensus 179 Glv~~vv~~-~~l~~~a~~~a~ 199 (256)
T PRK06143 179 GLVDRVVPL-AELDAAVERLAA 199 (256)
T ss_pred CCcCeecCH-HHHHHHHHHHHH
Confidence 999999975 444555555543
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.58 Score=57.09 Aligned_cols=85 Identities=20% Similarity=0.089 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh------------HHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF------------SALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~------------~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|... .-+...+.+.+ ..
T Consensus 102 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~ 180 (262)
T PRK06144 102 RVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEE-AL 180 (262)
T ss_pred CCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HH
Confidence 369999999999999999999999999999977654321 12334445321 11223333333 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.++++ .+..+.+.+|.
T Consensus 181 ~~Glv~~vv~~-~~l~~~a~~~a 202 (262)
T PRK06144 181 AAGLVNEVVED-AALDARADALA 202 (262)
T ss_pred HcCCcCeecCH-HHHHHHHHHHH
Confidence 68999999975 44444444444
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.56 Score=57.06 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=57.2
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|.. +.-+.+.+.+.+ ...-
T Consensus 93 kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~e-A~~~ 171 (255)
T PRK08150 93 VPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQE-GERL 171 (255)
T ss_pred CCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHHc
Confidence 699999999999999999999999999998764332 122344444432 111223333322 4479
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
|++|.+++++ +..+.+++|..-
T Consensus 172 Glv~~vv~~~-~l~~~a~~~a~~ 193 (255)
T PRK08150 172 GLAQYLVPAG-EALDKAMELARR 193 (255)
T ss_pred CCccEeeCch-HHHHHHHHHHHH
Confidence 9999999754 455656665443
|
|
| >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.49 Score=53.41 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=34.4
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
|.++...-...|+||..|+|+++++++|+.|+.||+|+.|+
T Consensus 115 ~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 115 CIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 33344444568999999999999999999999999999985
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=19 Score=43.56 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=64.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhh----hhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL----FEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e----~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..++++......++++.++...+-+|+|.-.. .|+.|.+-. ..........++..+..+..|+|..|- |...+|
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~-G~a~Gg 100 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAIN-GPAIGA 100 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEec-Cccccc
Confidence 57889999999999998876677777775432 377775421 112233345677888899999999998 344445
Q ss_pred hhhhhcccccCCccceeecccCcEEEe
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|..+++. .|+ ++|.++++++.
T Consensus 101 G~~lal~----cD~--~ia~~~a~f~~ 121 (243)
T PRK07854 101 GLQLAMA----CDL--RVVAPEAYFQF 121 (243)
T ss_pred HHHHHHh----CCE--EEEcCCCEEec
Confidence 5555554 366 77777777764
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=5.9 Score=48.40 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=64.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC--CCCchhh-h--------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG--FSGGQRD-L--------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G--f~~G~~~-e--------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.+++.+-.....++++.+.+ ..+-+|+|.-..+ |+.|..= + .....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57888999999999998865 5677888877663 8877541 1 112223345678889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 106 -G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 132 (260)
T PRK07657 106 -GIALGGGLELALAC----DF--RIAAESASLGL 132 (260)
T ss_pred -CEeechHHHHHHhC----CE--EEeeCCCEEcC
Confidence 34444455555543 65 66666665554
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.67 Score=56.73 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=54.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec---ChHHHHHhhcccc----cccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT---GFSALNKLLGREV----YSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt---G~~al~~~lG~~v----y~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|+|+|||..++..||++|+.+++.+ ++. |...+-+.+|... .-+...+. ++=...-|
T Consensus 105 kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~-a~eA~~~G 183 (266)
T PRK08139 105 QPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFID-AATAREWG 183 (266)
T ss_pred CCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccC-HHHHHHcC
Confidence 699999999999999999999999999998653 332 1112333344321 11222332 22245799
Q ss_pred ceEEEecCcHHHHHHHHHHH
Q 000086 1846 VVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~L 1865 (2304)
++|.+++++ +..+.+.+|.
T Consensus 184 Lv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK08139 184 LVNRVVPAD-ALDAAVARLA 202 (266)
T ss_pred CccEeeChh-HHHHHHHHHH
Confidence 999999754 4444454544
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=88.54 E-value=9.4 Score=46.43 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++-..-..++++.++. ..+-+|+|.-.. .|+.|..-. ..........++..+..+..|+|+.|-
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 47889999999999988765 467788886543 377775311 111222234567778899999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 97 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 123 (251)
T PLN02600 97 --GAALGGGLELALS----CDL--RICGEEAVFGL 123 (251)
T ss_pred --CeecchhHHHHHh----CCE--EEeeCCCEEeC
Confidence 55555 5444544 477 78888887776
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.53 Score=57.56 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=58.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccccc----ccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy----~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+++. |...+.+.+|.... -+.+.+.+ +=...
T Consensus 99 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a-~eA~~ 177 (265)
T PLN02888 99 RKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTA-ETAER 177 (265)
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCH-HHHHH
Confidence 3699999999999999999999999999988764331 22335555554321 01122222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++++ +..+.+.+|..-+
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~l 201 (265)
T PLN02888 178 WGLVNHVVEES-ELLKKAREVAEAI 201 (265)
T ss_pred cCCccEeeChH-HHHHHHHHHHHHH
Confidence 99999999754 4555666655433
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.43 Score=58.68 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=56.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcce-------Eec----C-hHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----G-FSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i-------~lt----G-~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. | ...+-+.+|... .-+.+.+.+.+ ..
T Consensus 109 ~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~e-A~ 187 (276)
T PRK05864 109 HQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEE-AE 187 (276)
T ss_pred CCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHH-HH
Confidence 3699999999999999999999999999988643 333 1 122455555322 11223333332 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.+++++ +..+.+.+|..
T Consensus 188 ~~Glv~~vv~~~-~l~~~a~~~a~ 210 (276)
T PRK05864 188 RIGLVSRQVPDE-QLLDTCYAIAA 210 (276)
T ss_pred HcCCcceeeCHH-HHHHHHHHHHH
Confidence 689999999754 45555555543
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=88.35 E-value=15 Score=45.32 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=63.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh--------------------hhHHHHHHHHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------------EGILQAGSTIVENLR 2035 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------------~gilk~ga~iv~al~ 2035 (2304)
...++++......++++.++. ..+-+|+|.-.. .|+.|..-.. ....+....++.++.
T Consensus 29 ~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (275)
T PLN02664 29 RNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIE 108 (275)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999998875 567777776543 3777763210 011223345677889
Q ss_pred cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2036 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2036 ~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+.+|+|+.|- |-..+||.-+++. .|+ .+|.++++++.
T Consensus 109 ~~~kPvIaav~-G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 146 (275)
T PLN02664 109 QCRKPVIAAIH-GACIGGGVDIVTA----CDI--RYCSEDAFFSV 146 (275)
T ss_pred hCCCCEEEEEC-CccccchHHHHHh----CCE--EEecCCCEecc
Confidence 99999999998 3444555555554 366 77777777655
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.51 Score=57.45 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 175 (260)
T PRK07657 97 PQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQE-AKE 175 (260)
T ss_pred CCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 46999999999999999999999999999886533 22 1223444455321 11222333333 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+++|..
T Consensus 176 ~Glv~~vv~~-~~l~~~a~~~a~ 197 (260)
T PRK07657 176 IGLVEFVVPA-HLLEEKAIEIAE 197 (260)
T ss_pred cCCCCeecCH-HHHHHHHHHHHH
Confidence 8999999975 445555555544
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.5 Score=57.43 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=56.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++-.||++|+.+++.+.+. |...+-+.+|... .-+...+.+.+ ...
T Consensus 93 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~e-A~~ 171 (254)
T PRK08259 93 SKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADE-ALA 171 (254)
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 3699999999999999999999999999998754331 2222444455432 11122233222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++++ +..+.+++|..
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a~ 193 (254)
T PRK08259 172 IGLANRVVPKG-QARAAAEELAA 193 (254)
T ss_pred cCCCCEeeChh-HHHHHHHHHHH
Confidence 99999999754 45555555543
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.47 Score=57.74 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=53.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcc---cccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGR---EVYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~---~vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++-.||++|+.+++.+.+. |...+.++.|. +..-+...+. ++-....|
T Consensus 102 kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~l~l~g~~~~-a~eA~~~G 180 (260)
T PRK07827 102 KPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFG-AAEAARIG 180 (260)
T ss_pred CCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHHHHHhCCccC-HHHHHHcC
Confidence 699999999999999999999999999988764432 11122222221 1111222232 22244689
Q ss_pred ceEEEecCcHHHHHHHHHHHh
Q 000086 1846 VVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
++|.++++..+....+.+-+.
T Consensus 181 lv~~v~~~l~~~a~~~a~~la 201 (260)
T PRK07827 181 LVTAAADDVDAAVAALLADLR 201 (260)
T ss_pred CcccchHHHHHHHHHHHHHHH
Confidence 999988654444444444443
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=24 Score=43.68 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC---CCCCchhhh--h---------hhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR---GFSGGQRDL--F---------EGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~---Gf~~G~~~e--~---------~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
..++.+......++++.++. ..+=+|+|.-.. .|+.|.+-. . ....+....++..+..+.+|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 47889999999999998876 456677776653 388886411 0 01111123466788899999999
Q ss_pred EEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 113 aV~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (278)
T PLN03214 113 AIR--GACPAGGCAVSLC----CDY--RLQTTEGTMGL 142 (278)
T ss_pred EEc--CcccchHHHHHHh----CCE--EEecCCCEecC
Confidence 998 55555 4444443 477 78888887776
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.62 Score=57.06 Aligned_cols=86 Identities=23% Similarity=0.217 Sum_probs=55.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (268)
T PRK07327 106 DKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEE-AER 184 (268)
T ss_pred CCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 36999999999999999999999999999887643 32 1122334444321 11122233333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.++++..
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~ 206 (268)
T PRK07327 185 IGLVSLAVDD-DELLPKALEVAE 206 (268)
T ss_pred cCCcceecCH-HHHHHHHHHHHH
Confidence 8999999975 445555555543
|
|
| >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.6 Score=52.79 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=34.7
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
|.++...-...|.||..|+|.+++|++||.|+.||+|++||
T Consensus 116 ~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 116 CIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 33444444578999999999999999999999999999985
|
The gene name is accB or fabE. |
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.95 E-value=28 Score=42.53 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-----------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
.+++++......++++.+++ ..+-+|+|.-.. .|+.|..-.. ....+....++.++..+..|+|+.|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999998865 456677776543 2766643210 1111233456788999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
- |...+||.-+++. .|+ ++|.++++++.-+.
T Consensus 105 ~-G~a~GgG~~lala----cD~--~ia~~~a~f~~pe~ 135 (257)
T PRK06495 105 N-GPALGAGLGLVAS----CDI--IVASENAVFGLPEI 135 (257)
T ss_pred C-CeeehhHHHHHHh----CCE--EEecCCCEeeChhh
Confidence 8 3444445555554 366 78888887776433
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=22 Score=45.37 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh--h-----------hHHHHHHHHHHHHHcCCCCEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--E-----------GILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~--~-----------gilk~ga~iv~al~~~~vP~i 2042 (2304)
.++.+.-.....++++.+++ ..+-+|+|.-.. .|+.|..-.. . ..++....++..+..+++|+|
T Consensus 25 Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (342)
T PRK05617 25 NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYI 104 (342)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57888999999999988876 456777777654 3777764211 0 111222346677889999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++. .|+ .+|.++|+++.
T Consensus 105 AaVn-G~a~GgG~~Lala----cD~--ria~~~a~f~~ 135 (342)
T PRK05617 105 ALMD-GIVMGGGVGISAH----GSH--RIVTERTKMAM 135 (342)
T ss_pred EEEc-CEEEccHhHHhhh----CCE--EEEcCCCEeeC
Confidence 9998 3444445555544 355 66666655554
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.6 Score=57.41 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=57.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecC-----hHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG-----FSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG-----~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ..
T Consensus 113 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~ 191 (277)
T PRK08258 113 PQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEE-GE 191 (277)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 369999999999999999999999999998865 34431 123445555321 11222333322 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
.-|++|.++++ .+..+.+.+|..-
T Consensus 192 ~~Glv~~vv~~-~~l~~~a~~~a~~ 215 (277)
T PRK08258 192 RWGFFNRLVEP-EELLAEAQALARR 215 (277)
T ss_pred HcCCCcEecCH-HHHHHHHHHHHHH
Confidence 79999999974 4556666666543
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=87.79 E-value=0.83 Score=55.58 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=55.1
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |..-+-+.+|... .-+...+.+.+ ...-
T Consensus 95 kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~e-A~~~ 173 (256)
T TIGR03210 95 KPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQE-ALAM 173 (256)
T ss_pred CCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHHc
Confidence 69999999999999999999999999999866443 2 2223444455432 11122233322 3468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+.+.++.
T Consensus 174 Glv~~vv~~~-~l~~~a~~~a 193 (256)
T TIGR03210 174 GLVNAVVPHD-QLDAEVQKWC 193 (256)
T ss_pred CCceeeeCHH-HHHHHHHHHH
Confidence 9999999754 4444444443
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=0.48 Score=57.76 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=54.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+...+.+.+ ...
T Consensus 96 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 174 (261)
T PRK11423 96 PKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQR-ALA 174 (261)
T ss_pred CCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHH-HHH
Confidence 369999999999999999999999999999876433 2 2222333344321 11112223222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +....++++.
T Consensus 175 ~GLv~~vv~~~-~l~~~a~~~a 195 (261)
T PRK11423 175 VGILNHVVEVE-ELEDFTLQMA 195 (261)
T ss_pred cCCcCcccCHH-HHHHHHHHHH
Confidence 89999999754 4444444443
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=11 Score=45.96 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=62.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh------------hhhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL------------FEGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e------------~~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++++.-.....++++.+++ ..+-+|+|.-. ..|+.|..=. ..........++..+..+.+|+|+.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAa 104 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAA 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47888999999999999875 45666666543 2377776311 0112233456777888999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||..+++.+ |+ ++|.++|+++.
T Consensus 105 v~-G~a~GgG~~lala~----D~--~ia~~~a~f~~ 133 (260)
T PRK07511 105 VE-GAAAGAGFSLALAC----DL--LVAARDAKFVM 133 (260)
T ss_pred EC-CeeehHHHHHHHhC----CE--EEeeCCCEEec
Confidence 98 34445566555553 66 67777766665
|
|
| >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.89 Score=42.95 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.9
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
..|+||..|.|..+.+++|+.|++|++++.|
T Consensus 37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999999999875
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. |
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.63 Score=56.75 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=57.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 172 (261)
T PRK03580 94 DKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEE-ALR 172 (261)
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999998875432 1 1223444445422 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+.+|..-
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~ 195 (261)
T PRK03580 173 WGIVNRVVPQ-AELMDRARELAQQ 195 (261)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHH
Confidence 8999999975 4555666666543
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=9.4 Score=46.92 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=63.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh-----------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
..+.++......++++.+++ ..+=+|+|.-.. .|+.|..-.. .........++.++..+.+|+|..
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 112 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIAC 112 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 58899999999999998876 456677776654 2777764110 111222345677888999999999
Q ss_pred EcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 113 v~--G~a~GgG~~Lala----cD~--~ia~~~a~f~~ 141 (269)
T PRK06127 113 IR--GYCIGGGMGIALA----CDI--RIAAEDSRFGI 141 (269)
T ss_pred EC--CEEecHHHHHHHh----CCE--EEeeCCCEeeC
Confidence 98 55555 4444444 466 78888877766
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.62 E-value=0.56 Score=56.80 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=55.9
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecChH-HHHHhhcccc----cccccccCcceeecccCce
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS-ALNKLLGREV----YSSHMQLGGPKIMATNGVV 1847 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG~~-al~~~lG~~v----y~s~~~lGG~~i~~~nGv~ 1847 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++. +++.|.. .+...+|... .-+...+.+.+ ....|++
T Consensus 95 kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~~Glv 173 (249)
T PRK07938 95 VPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAAE-LHHFGSV 173 (249)
T ss_pred CCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCcCCHHH-HHHCCCc
Confidence 69999999999999999999999999998865 3343322 2333444322 11223333322 3479999
Q ss_pred EEEecCcHHHHHHHHHHHh
Q 000086 1848 HLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1848 d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|.++++ .+..+.+.+|..
T Consensus 174 ~~vv~~-~~l~~~a~~~a~ 191 (249)
T PRK07938 174 EEVVPR-DQLDEAALEVAR 191 (249)
T ss_pred cEEeCH-HHHHHHHHHHHH
Confidence 999974 445555555543
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=8.6 Score=47.08 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=62.5
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC---CCCCCchhhhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW---RGFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~---~Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..+.++-.....++++.+++..+-+|+|.-. +-|+.|.+-.. .........++..+..+..|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~- 104 (261)
T PRK11423 26 NALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE- 104 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe-
Confidence 4788899999999999887756777777653 23777654211 01112234567788899999999988
Q ss_pred CCcCCc-hhhhhcccccCCccceeecccCcEEEee
Q 000086 2048 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2048 ~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
|-+.| |..+++. .|+ ++|.++++++.-
T Consensus 105 -G~a~GgG~~lala----cD~--~ia~~~a~f~~p 132 (261)
T PRK11423 105 -GSVWGGAFELIMS----CDL--IIAASTSTFAMT 132 (261)
T ss_pred -cEEechHHHHHHh----CCE--EEecCCCEecCc
Confidence 55555 4445554 366 677777766553
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.56 Score=57.11 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=55.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhccc----ccccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~----vy~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+. +. |..-+-+.+|.. +.-+...+.+.+ ...-
T Consensus 98 kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~~ 176 (260)
T PRK05809 98 KPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEE-ALRI 176 (260)
T ss_pred CCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHHc
Confidence 6999999999999999999999999999886533 32 122344555532 211223333322 3578
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.++++ .+..+.+.++.
T Consensus 177 Glv~~vv~~-~~l~~~a~~~a 196 (260)
T PRK05809 177 GLVNKVVEP-EKLMEEAKALA 196 (260)
T ss_pred CCCCcccCh-HHHHHHHHHHH
Confidence 999999975 44445555544
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=87.47 E-value=0.68 Score=56.87 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=56.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||.-++..||++|+.+++.+.+.. ...+-..+|... .-+...+.+.+ ...
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~e-A~~ 185 (273)
T PRK07396 107 PKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQE-ALD 185 (273)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHH-HHH
Confidence 36999999999999999999999999999997655432 222444445322 11222233332 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+.+|.
T Consensus 186 ~GLv~~vv~~-~~l~~~a~~~a 206 (273)
T PRK07396 186 MGLVNTVVPL-ADLEKETVRWC 206 (273)
T ss_pred cCCcCeecCH-HHHHHHHHHHH
Confidence 8999999975 44555555554
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=0.57 Score=58.02 Aligned_cols=88 Identities=19% Similarity=0.104 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEecChH--HHHHhhcccc----cccccccCcceeecccC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS--ALNKLLGREV----YSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~ltG~~--al~~~lG~~v----y~s~~~lGG~~i~~~nG 1845 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.|.. .+-..+|... .-+.+.+.+.+ ....|
T Consensus 118 pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~llltG~~i~A~e-A~~~G 196 (288)
T PRK08290 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFTGDRLTADE-AHRLG 196 (288)
T ss_pred CCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHHCC
Confidence 469999999999999999999999999998754 5554321 1223344321 11122222222 35689
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
++|.++++ .+..+.+.+|..-+
T Consensus 197 LV~~vv~~-~~l~~~a~~~a~~l 218 (288)
T PRK08290 197 MVNRVVPR-DELEAETLELARRI 218 (288)
T ss_pred CccEeeCH-HHHHHHHHHHHHHH
Confidence 99999975 45566666665444
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=87.40 E-value=6 Score=48.18 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhhh------------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e~------------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..+.++......++++.+++..+-+|+|.-.. .|+.|..-.. ..+.+....++..+..+.+|+|+.|
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 100 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAV 100 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999999987656667765433 4777763210 0111122456678889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |.-+++. .|+ .+|.++++++.
T Consensus 101 ~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 128 (256)
T TIGR02280 101 N--GVAAGAGANLALA----CDI--VLAAESARFIQ 128 (256)
T ss_pred C--CeeehHHHHHHHh----CCE--EEecCCCEEeC
Confidence 8 55555 4444444 477 78888887765
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=2 Score=58.43 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhc-cCC-CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc
Q 000086 1985 SATKTAQALMDFNR-EEL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR 2062 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~-~~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~ 2062 (2304)
++..+++.++.+.. .++ -||.-+|+||-+....++ ....+..++....|+++++- +-.+-||-|+++..
T Consensus 348 ~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~-------i~~~i~~~r~~gKPVvas~~-~~aASggY~iA~aa- 418 (618)
T PRK10949 348 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEV-------IRAELAAARAAGKPVVVSMG-GMAASGGYWISTPA- 418 (618)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHH-------HHHHHHHHHhcCCcEEEEEC-CCCccHHHHHHHhc-
Confidence 34566677777644 333 478889999954433222 23344445667789999876 23445677777664
Q ss_pred cCCccceeecccCcEEEeeCc
Q 000086 2063 INSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2063 i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|. +||.|++..|-+|-
T Consensus 419 ---d~--I~a~p~t~tGSIGV 434 (618)
T PRK10949 419 ---NY--IVASPSTLTGSIGI 434 (618)
T ss_pred ---CE--EEECCCCceeeCcE
Confidence 65 89999876665554
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.75 Score=56.96 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=57.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++ . |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 121 pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~e-A~~ 199 (287)
T PRK08788 121 GAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEE-LHD 199 (287)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHH
Confidence 369999999999999999999999999999875433 2 1222444444322 11223344333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++++ +..+.+++|..-+
T Consensus 200 ~GLV~~vv~~~-el~~~a~~~a~~i 223 (287)
T PRK08788 200 MGLVDVLVEDG-QGEAAVRTFIRKS 223 (287)
T ss_pred CCCCcEecCch-HHHHHHHHHHHHH
Confidence 89999999754 4555555555433
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.54 Score=57.59 Aligned_cols=85 Identities=16% Similarity=0.076 Sum_probs=55.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+. ++=...
T Consensus 108 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~-a~eA~~ 186 (272)
T PRK06210 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFY-AEEALR 186 (272)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccC-HHHHHH
Confidence 469999999999999999999999999999876432 1 1222334444321 01112222 222457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+.+|.
T Consensus 187 ~Glv~~vv~~-~~l~~~a~~~a 207 (272)
T PRK06210 187 LGLVNRVVPP-DELMERTLAYA 207 (272)
T ss_pred cCCcceecCH-HHHHHHHHHHH
Confidence 9999999975 44555555554
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=0.61 Score=58.11 Aligned_cols=86 Identities=20% Similarity=0.078 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----C---hHHHHHhhcccc----cccccccCcceeecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----G---FSALNKLLGREV----YSSHMQLGGPKIMATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----G---~~al~~~lG~~v----y~s~~~lGG~~i~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++- | ...+-..+|... .-+...+.+.+ ...-|+
T Consensus 127 ~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~~~~~~vG~~~A~~llltG~~i~a~e-A~~~GL 205 (302)
T PRK08272 127 HKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQRAKRLLFTGDCITGAQ-AAEWGL 205 (302)
T ss_pred CCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHHHHHHHhhHHHHHHHHHcCCccCHHH-HHHcCC
Confidence 3699999999999999999999999999998764331 1 111222233221 11122333333 457999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
+|.++++ .+....+.++..
T Consensus 206 v~~vv~~-~~l~~~a~~la~ 224 (302)
T PRK08272 206 AVEAVPP-EELDERTERLVE 224 (302)
T ss_pred CceecCH-HHHHHHHHHHHH
Confidence 9999974 444455555543
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.65 Score=56.40 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=56.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 94 ~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 172 (257)
T PRK07658 94 SKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAE-ALK 172 (257)
T ss_pred CCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999886533 32 1222444445421 11223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.|++|.+++. .+..+.++++..
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~ 194 (257)
T PRK07658 173 WGLVNGVFPE-ETLLDDAKKLAK 194 (257)
T ss_pred cCCcCeecCh-hHHHHHHHHHHH
Confidence 9999999974 444455555543
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=86.99 E-value=6.2 Score=43.46 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=68.7
Q ss_pred CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccc
Q 000086 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ 310 (2304)
Q Consensus 231 yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q 310 (2304)
-|+.|||....-.--=.++.+.++|. ......+..++++.+.++-..|+.+-++. |+++.... .+.
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~----~~~~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s~-----Y~~-- 67 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLI----GFGSLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGSP-----YRG-- 67 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhcc----ccCCCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEee-----cCC--
Confidence 48999999855333334566666555 22233346789999999877788776664 56665421 111
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHH-HCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 311 KIIEEGPITVAPLETVKKLEQAARRLAK-CVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 311 KiieeaPa~~l~~e~~~~m~e~A~rlak-alGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
.+....+.+.. +.+.+.++ .-..--+..+|+-++. +|+.+++|+|+=
T Consensus 68 -----~~~~~~~~~~~----~~~~~~~~~~~~~p~~~vlDvg~~~-~G~~~lVE~N~~ 115 (130)
T PF14243_consen 68 -----DWDLEPDPDVV----AFAIQALAAAWTLPPAYVLDVGVTD-DGGWALVEANDG 115 (130)
T ss_pred -----CcccCCCHHHH----HHHHHHHHhcccCCCeEEEEEEEeC-CCCEEEEEecCc
Confidence 12111233333 33334444 2333477789999984 789999999994
|
|
| >cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit | Back alignment and domain information |
|---|
Probab=86.84 E-value=1 Score=49.07 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=36.6
Q ss_pred CCeeeeCCCceeEEEEccCCCE-Ecc--C-CcEEEE--EccccceeeecCCCcEE-EEeeCCCCccCCCCEEEEEecC
Q 000086 687 PSKLVAETPCKLLRYLVSDGSH-IDA--D-TPYAEV--EVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~-V~~--G-~~l~~i--EaMKm~~~l~ap~~G~V-~~i~~~G~~v~~G~~La~l~~~ 757 (2304)
.+.|.||..|+|..+.-.--.. ++. | +.|.-| .+.|| .|.= +..+++||.|.+||+|+++..+
T Consensus 35 ~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l--------~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 35 DGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeec--------CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 4689999999987764321111 121 1 112221 12222 2322 3338999999999999999754
|
The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. |
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=9.7 Score=46.40 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchhhhh-h------h------HHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDLF-E------G------ILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~~e~-~------g------ilk~ga~iv~al~~~~vP~i~ 2043 (2304)
..++++-.....++++.++. ..+-+|+|.-..+ |+.|.+-.. . + ..+....++.++..+.+|+|+
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 47899999999999998875 5566777755432 777764211 0 0 112234566788899999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 104 av~-G~a~GgG~~lala----~D~--ria~~~a~f~~ 133 (255)
T PRK07260 104 CVD-GAVAGAAANMAVA----ADF--CIASTKTKFIQ 133 (255)
T ss_pred Eec-CeeehhhHHHHHh----CCE--EEEeCCCEEec
Confidence 999 3444556655555 477 88888888775
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=21 Score=44.01 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h-------------------hhHHHHHHHHHHHHHc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F-------------------EGILQAGSTIVENLRT 2036 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~-------------------~gilk~ga~iv~al~~ 2036 (2304)
.+++++...-..++++.+++ ..+-+|+|.-.. .|+.|.+-. . .........++.++..
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 107 (272)
T PRK06142 28 NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVAD 107 (272)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998876 567888887643 477776411 0 0112223456778889
Q ss_pred CCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2037 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2037 ~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+..|+|+.|- |...+||.-+++.+ |+ ++|.++++++.
T Consensus 108 ~~kpvIAav~-G~a~GgG~~lalac----D~--~ia~~~a~f~~ 144 (272)
T PRK06142 108 CRKPVIAAVQ-GWCIGGGVDLISAC----DM--RYASADAKFSV 144 (272)
T ss_pred CCCCEEEEec-CccccchHHHHHhC----CE--EEecCCCeecc
Confidence 9999999998 34444455555543 55 66666665544
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=0.66 Score=57.76 Aligned_cols=85 Identities=16% Similarity=-0.049 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe--------cC-hHHHHHhhccc----ccccccccCcceeecccC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL--------TG-FSALNKLLGRE----VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l--------tG-~~al~~~lG~~----vy~s~~~lGG~~i~~~nG 1845 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ .+ ...+ ..+|.. +.-+.+.+.+.+ ...-|
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~~-~~vG~~~A~~llltg~~i~A~e-A~~~G 189 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMWL-YRLSLAKVKWHSLTGRPLTGVQ-AAEAE 189 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHHH-HHhhHHHHHHHHHcCCccCHHH-HHHcC
Confidence 469999999999999999999999999998865333 21 1111 123321 111223334433 45799
Q ss_pred ceEEEecCcHHHHHHHHHHHh
Q 000086 1846 VVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
+++.++++ .+....+.+|..
T Consensus 190 LV~~vv~~-~~l~~~a~~~a~ 209 (298)
T PRK12478 190 LINEAVPF-ERLEARVAEVAT 209 (298)
T ss_pred CcceecCH-HHHHHHHHHHHH
Confidence 99999975 445555666544
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=0.59 Score=56.87 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceE-------ec----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~-------lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+.+.+|... .-+...+.+.+ ...
T Consensus 100 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 178 (260)
T PRK05980 100 PKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAER-ALE 178 (260)
T ss_pred CCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHH-HHH
Confidence 36999999999999999999999999999886533 22 2223444445321 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 179 ~Glv~~vv~~~-~l~~~a~~~a 199 (260)
T PRK05980 179 IGLVNAVVPHE-ELLPAARALA 199 (260)
T ss_pred cCCCCcccCHH-HHHHHHHHHH
Confidence 89999999754 4555555554
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=86.57 E-value=9.1 Score=46.64 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=62.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh------hhHHHHHHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF------EGILQAGSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~------~gilk~ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
..+++.......++++.++. -.+-+|+|.-.. .|+.|.+-.. ....+....++.++..+.+|+|+.|- |..
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-G~a 100 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVR-GQC 100 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEec-Cee
Confidence 47889999999999998875 456677776543 3777654111 11233345577788899999999998 334
Q ss_pred CCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2051 LRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2051 ~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+||.-+++.+ |+ ++|.++++++.
T Consensus 101 ~GgG~~lal~c----D~--~ia~~~a~f~~ 124 (251)
T TIGR03189 101 LGGGLEVAAAG----NL--MFAAPDAKLGQ 124 (251)
T ss_pred eeHHHHHHHhC----CE--EEEcCCCEEeC
Confidence 44555555543 66 67777766655
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.95 Score=55.21 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=53.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c---ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t---G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+...+.+.+ ....
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~~ 177 (262)
T PRK05995 99 PKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDAAE-ALRL 177 (262)
T ss_pred CCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 369999999999999999999999999998865332 2 2222334455432 11122232222 3468
Q ss_pred CceEEEecCcHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~ 1864 (2304)
|++|.+++++ +..+.+.+|
T Consensus 178 Glv~~vv~~~-~l~~~a~~~ 196 (262)
T PRK05995 178 GLVHEVVPAE-ALDAKVDEL 196 (262)
T ss_pred CCCCeecCHH-HHHHHHHHH
Confidence 9999999643 344444444
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=29 Score=42.35 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=63.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..+.++......++++.+.. ..+-+|+|.... .|+.|.+-.. .........++..+..+..|+|+.|- |
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G 105 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN-G 105 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC-C
Confidence 57889999999999988876 467788886543 3777753110 12334456678888899999999999 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
-..+||.-+++.+ |+ .+|.++++++.
T Consensus 106 ~a~GgG~~lal~c----D~--ria~~~a~f~~ 131 (259)
T PRK06688 106 PAVGVGVSLALAC----DL--VYASESAKFSL 131 (259)
T ss_pred eeecHHHHHHHhC----CE--EEecCCCEecC
Confidence 3444455555543 55 66666666655
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=26 Score=42.85 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-h------hhhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e------~~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
.+++++......++++.++. ..+-+|+|.-.+ .|+.|.+= + .....+....++..+..+.+|+|+.|- |.
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-G~ 108 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVN-GY 108 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc-cE
Confidence 57889999999999998865 566777776543 37777641 1 111223345567788899999999998 34
Q ss_pred cCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
..+||.-+++.+ |+ .+|.++++++.
T Consensus 109 a~GgG~~lalac----D~--ria~~~a~f~~ 133 (261)
T PRK08138 109 ALGGGCELAMHA----DI--IVAGESASFGQ 133 (261)
T ss_pred EEcHHHHHHHhC----CE--EEecCCCEeeC
Confidence 444555555543 44 55555555443
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=9.3 Score=46.65 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++.++......++++.+.. ..+-+|+|.-.. .|+.|.+=. .....+....++..+..+.+|+|+.|
T Consensus 28 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 28 LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 357889999999999998865 566677776654 488885311 11122334556778889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |.-+++.+ |+ ++|.++++++.
T Consensus 108 ~--G~a~GgG~~lalac----D~--~ia~~~a~f~~ 135 (256)
T PRK06143 108 P--GWCLGGGLELAAAC----DL--RIAAHDAQFGM 135 (256)
T ss_pred C--CEEeehhHHHHHhC----CE--EEecCCCEEeC
Confidence 8 54544 55444443 55 66666666554
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=86.31 E-value=8.7 Score=45.96 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchh-hhh--------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQR-DLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~-~e~--------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.++.++......++++..+. .++-+|+|.-.. -|+.|.. .+. ....+....++.++..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~- 107 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAIT- 107 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc-
Confidence 47888999999999988765 677777776433 2666653 110 11223345677889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 108 G~a~GgG~~lalac----D~--ria~~~a~f~~ 134 (222)
T PRK05869 108 GYALGAGLTLALAA----DW--RVSGDNVKFGA 134 (222)
T ss_pred CEeecHHHHHHHhC----CE--EEecCCCEEcC
Confidence 33444455555543 55 56666655544
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=13 Score=45.26 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=63.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchhh-hhh-------hHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD-LFE-------GILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~~-e~~-------gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..++.++......++++..+. ..+-+|+|.-.++ |+.|..= +.. ........++..+..+.+|+|+.|-
T Consensus 27 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 105 (251)
T PRK06023 27 KNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD- 105 (251)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC-
Confidence 368999999999999998876 4677777765433 7777541 110 1112334567789999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ .+|.++++++.
T Consensus 106 G~a~GgG~~la~ac----D~--ria~~~a~f~~ 132 (251)
T PRK06023 106 GLAIGIGTTIHLHC----DL--TFASPRSLFRT 132 (251)
T ss_pred CceecHHHHHHHhC----CE--EEEeCCCEecC
Confidence 34444455555443 66 66666666554
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.5 Score=59.15 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=60.3
Q ss_pred ceeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEE------EEEecCCceEEEeCCeeEEEEeeecccceEEEEeCce
Q 000086 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAE------IHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2304)
Q Consensus 605 ~~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~------v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t 678 (2304)
...+.+.+||+.|.|++...+... .+........ ......+.+..-+.|.-..+.+++ +-.+..+..-
T Consensus 472 ~~~~~~~vnG~~~~V~v~d~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~---Gd~V~~G~~l 545 (582)
T TIGR01108 472 SGSYTVEVEGKAFVVKVSPGGDVS---QITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSE---GQTVAEGEVL 545 (582)
T ss_pred ceEEEEEECCEEEEEEEcCCcccc---ccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCC---CCEECCCCEE
Confidence 456888999999999987543221 1110000000 000112233334455554444432 1122222223
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPY 715 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l 715 (2304)
+.++...-...|.||.+|+|.+++|++||.|+.||+|
T Consensus 546 ~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 546 LILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 3344445567899999999999999999999999975
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=85.91 E-value=5.5 Score=54.15 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcc-C-CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc
Q 000086 1985 SATKTAQALMDFNRE-E-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR 2062 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~~-~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~ 2062 (2304)
+....++.++.+... + -.||.-+|+||-+.-.. +.+ ...+..+.....|+++++- +-.+.||-|+++.+
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as---e~i----~~~i~~~~~~gKPVva~~~-g~aaSggY~iA~aa- 400 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS---EII----RRELARAQARGKPVIVSMG-AMAASGGYWIASAA- 400 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH---HHH----HHHHHHHHhCCCcEEEEEC-CccccHHHHHHHhC-
Confidence 455667777777553 3 46888899999433222 112 2344556666799999998 33566677777764
Q ss_pred cCCccceeecccCcEEEeeCc
Q 000086 2063 INSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2063 i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|. +||.|++.+|-+|-
T Consensus 401 ---D~--I~a~p~t~~GSIGv 416 (584)
T TIGR00705 401 ---DY--IVASPNTITGSIGV 416 (584)
T ss_pred ---CE--EEECCCCeeecCEE
Confidence 65 89999998766544
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=11 Score=46.03 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=62.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh---------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF---------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~---------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.+++++......++++.+.+ ..+-+|+|.-.+ .|+.|.+= +. .........++.++..+.+|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 47889999999999998865 567777775533 27777641 11 11223445678889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 103 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (257)
T PRK07658 103 -GAALGGGLELAMS----CHI--RFATESAKLGL 129 (257)
T ss_pred -CeeeeHHHHHHHh----CCE--EEecCCCcccC
Confidence 3344445544444 366 66666666654
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=85.77 E-value=28 Score=42.48 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=68.0
Q ss_pred CccCHHHHHHHHHHHHHhhcc-CCCEEEEecCC-CCCCchhhhh-h---------hHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNRE-ELPLFILANWR-GFSGGQRDLF-E---------GILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~-~lPLv~l~d~~-Gf~~G~~~e~-~---------gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++.......+++.+++. .+.+|+|.-.. .|+.|.+=-. . ........++.++..+..|+|+.|-
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 488999999999999999885 88888776654 5888764221 1 2334455688999999999999998
Q ss_pred CCCcCCchhhhhcccc--cC-CccceeecccCcEEEeeCccch
Q 000086 2047 MMAELRGGAWVVVDSR--IN-SDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~--i~-~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|-..+||.-.++.+. +. .+. .|+.|...+|++.+.|+
T Consensus 107 -G~a~GgG~eLal~~D~ria~~~a--~f~~pe~~iGl~Pg~g~ 146 (257)
T COG1024 107 -GYALGGGLELALACDIRIAAEDA--KFGLPEVNLGLLPGDGG 146 (257)
T ss_pred -ceEeechhhhhhcCCeEEecCCc--EecCcccccccCCCCcH
Confidence 334444555554432 11 222 34445555555554343
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=11 Score=46.02 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=65.5
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh-------h---hHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-------E---GILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~-------~---gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
.++.........++++.++. ..+-+|+|.-.. .|+.|..-.. . ...+....++..+..+..|+|+.|
T Consensus 30 Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 109 (262)
T PRK06144 30 NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI 109 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47888888889999988876 457777776543 4888764210 0 112234456777889999999999
Q ss_pred cCCCcCCch-hhhhcccccCCccceeecccCcEEEeeC
Q 000086 2046 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2046 ~~~ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
- |-+.|| .-+++. .|+ ++|.++++++.-+
T Consensus 110 ~--G~a~GgG~~lala----~D~--~ia~~~a~f~~pe 139 (262)
T PRK06144 110 A--GACVGGGAAIAAA----CDL--RIATPSARFGFPI 139 (262)
T ss_pred C--CeeeehHHHHHHh----CCE--EEecCCCEeechh
Confidence 8 555554 444444 477 8888988887644
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=85.65 E-value=12 Score=45.59 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.+.+ ..+-+|+|.-.. .|+.|.+-. .....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 26 NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 57889999999999988765 456677775533 377776321 111223345577789999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ ++|.++++++.
T Consensus 106 -G~a~GgG~~lal~c----D~--~va~~~a~f~~ 132 (260)
T PRK05809 106 -GFALGGGCELSMAC----DI--RIASEKAKFGQ 132 (260)
T ss_pred -CeeecHHHHHHHhC----CE--EEeeCCCEEeC
Confidence 34444555555553 66 77777777665
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=85.60 E-value=28 Score=45.42 Aligned_cols=103 Identities=12% Similarity=0.179 Sum_probs=62.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh--hhh-----------hHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE-----------GILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~--e~~-----------gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.++..+......++++.++. ..+-+|+|.-.+ .|+.|..- ... ...+....+.+.+..+..|+|+
T Consensus 64 NALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA 143 (407)
T PLN02851 64 NALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVA 143 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 58899999999999998866 577777775432 37666531 100 0112233455667789999999
Q ss_pred EEcCCCcCCc-hhhhhccccc---CCccceeecccCcEEEeeCccc
Q 000086 2044 YIPMMAELRG-GAWVVVDSRI---NSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2044 ~I~~~ge~~G-Ga~vv~~~~i---~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
.|- |-+.| |..+++.+.+ ..+. .|+-|..++|+...-|
T Consensus 144 ~v~--G~amGGG~gLal~~D~rVate~a--~famPE~~iGl~PdvG 185 (407)
T PLN02851 144 IMD--GITMGCGAGISIPGMFRVVTDKT--VFAHPEVQMGFHPDAG 185 (407)
T ss_pred EEc--CEEeeHHHHHHHhCCEEEEeCCc--eEecchhccCCCCCcc
Confidence 988 54444 5555554321 1222 4555556666553333
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=11 Score=45.99 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhhh------------h-hHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------------E-GILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e~------------~-gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++.++......++++.++...+.+|+|.-.+ .|+.|..-.. . ........++.++..+.+|+|+.
T Consensus 26 Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 26 NSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999885567777775433 4777653110 0 01112234677888999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 106 v~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK08140 106 VN-GVAAGAGANLALA----CDI--VLAARSASFIQ 134 (262)
T ss_pred EC-CeeehhHHHHHHh----CCE--EEecCCCEEec
Confidence 98 3344445555554 366 77777777664
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=14 Score=45.15 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh---------hhH---HHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EGI---LQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~gi---lk~ga~iv~al~~~~vP~i~~ 2044 (2304)
..+.++-.....++++.++. ..+-+|+|.-.. .|+.|.+-.. ... .+....++.++..+..|+|+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 47889999999999998876 566777776544 3777754210 011 122355677888999999999
Q ss_pred EcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 106 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK05995 106 VH--GDAYAGGMGLVAA----CDI--AVAADHAVFCL 134 (262)
T ss_pred EC--CEEEhhHHHHHHh----CCE--EEeeCCCEEeC
Confidence 98 44444 5555554 366 67777777666
|
|
| >PF13437 HlyD_3: HlyD family secretion protein | Back alignment and domain information |
|---|
Probab=85.16 E-value=1 Score=46.98 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.7
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 726 ~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
+|+||.+|+|..+ +++|+.|.+|++|+.|...+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 35 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTDD 35 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccce
Confidence 4899999999988 999999999999999987643
|
|
| >PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry | Back alignment and domain information |
|---|
Probab=85.07 E-value=0.56 Score=57.71 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=22.8
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.+|.++.+|+|..| |++|+.|++||+|++|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 04678999999999 9999999999999999765
|
; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B. |
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=84.84 E-value=11 Score=46.16 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh-hhh-------hHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LFE-------GILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~-e~~-------gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.+|..+......++++.++. ..+-+|+|.-.. .|+.|..= +.. ........++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (256)
T TIGR03210 24 NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ- 102 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 47888999999999998865 566777777654 38777641 110 0111234567788999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 103 G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (256)
T TIGR03210 103 GYAIGGGNVLVTIC----DL--TIASEKAQFGQ 129 (256)
T ss_pred CEEehhhHHHHHhC----CE--EEEeCCCEEec
Confidence 34444455555543 66 67777766665
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=84.75 E-value=2 Score=49.47 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=36.2
Q ss_pred ceEEEEEc---CcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~vt---g~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+++++. |.+...|++++.-||.++|.+++.|+..||-
T Consensus 59 ~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi 100 (172)
T cd07015 59 IPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 100 (172)
T ss_pred cCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEcccc
Confidence 59999999 8899899999999999999999999999983
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=13 Score=45.54 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh---------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF---------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~---------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++......++++.++. ..+-+|+|.-.. .|+.|..-.. ....+....++..+..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 47889999999999998875 567777776654 3877753110 11223345577888999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ ++|.++++++.
T Consensus 104 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (258)
T PRK09076 104 --GYAMGGGLECALA----CDI--RIAEEQAQMAL 130 (258)
T ss_pred --CEEecHHHHHHHh----CCE--EEecCCCEeeC
Confidence 55544 5544444 366 77777776655
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=11 Score=46.05 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhhhh-------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
.+++.+-..-..++++.+++ ..+-+|+|.-.. .|+.|.+-.. ....+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 47889999999999998876 567778777654 3877764211 0111223456778889999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++.+ |+ .+|.++++++.
T Consensus 105 aav~-G~a~GgG~~lal~c----D~--ria~~~a~f~~ 135 (260)
T PRK05980 105 AAVN-GLAFGGGCEITEAV----HL--AIASERALFAK 135 (260)
T ss_pred EEEc-CEEEhhhhHHhHhC----CE--EEecCCCEecC
Confidence 9998 34444455444443 55 56666665544
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=84.52 E-value=16 Score=44.67 Aligned_cols=94 Identities=17% Similarity=0.047 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhhhh------hh-----HHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------EG-----ILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~e~------~g-----ilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
.+++++......++++.+.. .+-+|++...+ -|+.|..-.. .+ .......++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 104 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVR 104 (255)
T ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57889999999999998874 56677776543 3777652110 00 112224567788889999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 105 -G~a~GgG~~lala----~D~--~ia~~~a~f~~ 131 (255)
T PRK07112 105 -GKVNAGGIGFVAA----SDI--VIADETAPFSL 131 (255)
T ss_pred -cEEEcchhHHHHc----CCE--EEEcCCCEEeC
Confidence 3344445555554 477 78888888776
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=84.35 E-value=18 Score=45.21 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh--------------------------hhHHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------------------EGILQAGST 2029 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------------------~gilk~ga~ 2029 (2304)
..+++++...-..++++.++. ..+-+|+|.-.. .|+.|..-.. .........
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (296)
T PRK08260 25 LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGR 104 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHH
Confidence 358899999999999998865 567777776543 3666643110 011112235
Q ss_pred HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2030 IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2030 iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
++..+..+.+|+|+.|- |.+.+||.-+++. .|+ ++|.++++++.-
T Consensus 105 ~~~~l~~~pkPvIAav~-G~a~GgG~~Lala----cD~--ria~~~a~f~~p 149 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVN-GPAVGVGATMTLA----MDI--RLASTAARFGFV 149 (296)
T ss_pred HHHHHHhCCCCEEEEEC-CeeehHhHHHHHh----CCE--EEeeCCCEEecc
Confidence 67788889999999998 3444556655555 477 788888887763
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=9.6 Score=48.19 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=47.8
Q ss_pred CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2002 PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2002 PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
-||.-.|+||-++...+. .+..+..+.+.+.|+++++-. -.+-||-|+++.. |. +||.|.+.+|.+
T Consensus 125 aVvLridSpGG~v~~s~~-------a~~~l~~lr~~~kpVva~v~~-~AASggY~iAsaA----D~--I~A~P~a~vGSI 190 (330)
T PRK11778 125 EVLLRLESPGGVVHGYGL-------AASQLQRLRDAGIPLTVAVDK-VAASGGYMMACVA----DK--IIAAPFAIVGSI 190 (330)
T ss_pred eEEEEEeCCCCchhHHHH-------HHHHHHHHHhcCCCEEEEECC-chhhHHHHHHHhC----CE--EEECCCCeEEee
Confidence 489999999954432211 233356677888999999872 2345666666653 55 899999998888
Q ss_pred Cccc
Q 000086 2082 EPEG 2085 (2304)
Q Consensus 2082 ~Peg 2085 (2304)
|.-+
T Consensus 191 GVi~ 194 (330)
T PRK11778 191 GVVA 194 (330)
T ss_pred eeee
Confidence 7743
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=84.34 E-value=1.3 Score=53.86 Aligned_cols=89 Identities=24% Similarity=0.192 Sum_probs=61.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------c----ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------t----G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.++|||.-++..||++|+.+++.+.+ . |...+-+.+|..- .-+...+.+.+ ...
T Consensus 98 ~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~e-A~~ 176 (257)
T COG1024 98 PKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAE-ALE 176 (257)
T ss_pred CCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HHH
Confidence 469999999999999999999999999998875433 2 1233444555432 01112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
.|++|.++++..+..+.+++|...+
T Consensus 177 ~Glv~~vv~~~~~l~~~a~~~a~~~ 201 (257)
T COG1024 177 LGLVDEVVPDAEELLERALELARRL 201 (257)
T ss_pred cCCcCeeeCCHHHHHHHHHHHHHHH
Confidence 9999999987667777777777655
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=84.27 E-value=47 Score=42.63 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh-h-----------hhhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-L-----------FEGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~-e-----------~~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.+++.+......++++.+.. ..+-+|+|.-.. .|+.|..- + ........-.++.++..+.+|+|+
T Consensus 50 NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIA 129 (360)
T TIGR03200 50 NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVIC 129 (360)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 47889999999999988764 678899998766 38777631 1 111222234567788899999999
Q ss_pred EEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEee
Q 000086 2044 YIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2044 ~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
.|- |-+.| |.-+++. +|+ .+|.++|+++.-
T Consensus 130 AVn--G~AiGGGleLALa----CDl--rIAse~A~Fg~P 160 (360)
T TIGR03200 130 RVN--GMRIGGGQEIGMA----ADF--TIAQDLANFGQA 160 (360)
T ss_pred EEC--CEeeeHHHHHHHh----CCE--EEEcCCCEEeCc
Confidence 998 44555 4444444 366 677777776663
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=84.22 E-value=17 Score=44.71 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh----------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL----------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e----------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.++. ..+-+|+|.-.. .|+.|..-. .....+....++.++..+..|+|+.|-
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (266)
T PRK08139 33 NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH 112 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999998765 456666665432 377776421 011222335677888999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++.+ |+ .+|.++++++.
T Consensus 113 --G~a~GgG~~lalac----D~--ria~~~a~f~~ 139 (266)
T PRK08139 113 --GIATAAGCQLVASC----DL--AVAADTARFAV 139 (266)
T ss_pred --ceeeHHHHHHHHhC----CE--EEEeCCCEEeC
Confidence 55555 54444443 66 67777776655
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=15 Score=44.80 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h------hhH---HHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------EGI---LQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~------~gi---lk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.++. .++-+|+|.-. +.|+.|..-. . ... .+....++..+..+.+|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57889999999999998866 46667777653 3477776421 1 111 12234567788899999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++. .|+ ++|.++++++.
T Consensus 103 -G~a~GgG~~Lal~----cD~--ria~~~a~f~~ 129 (249)
T PRK07938 103 -GFCLGGGIGLVGN----ADV--IVASDDATFGL 129 (249)
T ss_pred -CEEeehHHHHHHh----CCE--EEEeCCCEeeC
Confidence 3444445555554 366 77777777766
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=20 Score=44.38 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=62.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-------------hhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.+++++......++++.++. ..+-+|+|.-.. .|+.|..-.. .........++.++..+.+|+|+
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA 118 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57888989999999988864 567777776543 3776653211 01112234677889999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||.-+++.+ |+ ++|.++++++.
T Consensus 119 aV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~ 148 (277)
T PRK08258 119 AVD-GVCAGAGAILAMAS----DL--RLGTPSAKTAF 148 (277)
T ss_pred EEC-CeeehHHHHHHHhC----CE--EEecCCCEEec
Confidence 998 33444455555543 66 77777777766
|
|
| >TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit | Back alignment and domain information |
|---|
Probab=83.77 E-value=0.97 Score=59.06 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=40.3
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEee
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~ 739 (2304)
++-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 34 ~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 34 RDFVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred hhcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 444677778999999999999999998754 57899999999999993
|
This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. |
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=15 Score=45.25 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-----------hhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..+.++-.....++++.++. ..+-+|+|.-.. .|+.|..=. ..........++..+..+.+|+|+.|
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 47888889999999988876 456677775443 377776321 11122333566778889999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 114 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 141 (268)
T PRK07327 114 H--GPAVGAGLVAALL----ADI--SIAAKDARIID 141 (268)
T ss_pred c--CeeeehhhHHHHh----CCE--EEecCCCEEeC
Confidence 8 44444 5544544 366 67777776664
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=1.2 Score=55.00 Aligned_cols=87 Identities=10% Similarity=0.036 Sum_probs=57.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcc-------eEec----C-hHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----G-FSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~-------i~lt----G-~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. | ...+.+.+|... .-+...+.+.+ ..
T Consensus 107 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~e-A~ 185 (278)
T PLN03214 107 RLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAE-AK 185 (278)
T ss_pred CCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHH-HH
Confidence 369999999999999999999999999998864 3442 1 122445555432 11122233332 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
.-|++|.++++ .+..+.+++|..-
T Consensus 186 ~~Glv~~vv~~-~~l~~~a~~~a~~ 209 (278)
T PLN03214 186 QLGLIDEVVPA-AALMEAAASAMER 209 (278)
T ss_pred HcCCCcEecCh-HHHHHHHHHHHHH
Confidence 68999999975 4555666666543
|
|
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.32 E-value=4.6 Score=52.10 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=65.9
Q ss_pred eEEEEEEEEecCCceEEEeCCeeEEEE---eeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEcc-CCCEEcc
Q 000086 636 SEIEAEIHTLRDGGLLMQLDGNSHVVY---AEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS-DGSHIDA 711 (2304)
Q Consensus 636 ~~~~V~v~~l~dg~l~v~~~G~s~~v~---~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~-~Gd~V~~ 711 (2304)
..+.+.++..+++.+.+.++|.+|..- +..+.....+.+++ ..+....+.-.-|..+.+..+ .+-.|+-
T Consensus 511 ~~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~g~~~~l~~~~~~~~ve~ 583 (670)
T KOG0238|consen 511 NPVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDG-------EGNGYQGRVIILGDEISLFSNEGVIKVEV 583 (670)
T ss_pred cceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEe-------ccCceEEEEEEeCCeEEEEecCcceeEec
Confidence 347788888889999999999985432 12212222222221 122333333333433333332 2223333
Q ss_pred CCcEEEEEccccce------eeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 712 DTPYAEVEVMKMCM------PLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 712 G~~l~~iEaMKm~~------~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
.++ -.++.|+=+. .+.||..|+|+++ +++|+.|..||.|..++.
T Consensus 584 ~~~-k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 584 LPP-KYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred CCh-HhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 333 2333343332 3789999999999 999999999999988764
|
|
| >PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Probab=83.32 E-value=1.3 Score=53.48 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.-...|.||..|+|.++++++||.|..||+|++||
T Consensus 239 KmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 239 KLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred ceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 33457999999999999999999999999999996
|
|
| >TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein | Back alignment and domain information |
|---|
Probab=83.31 E-value=1.1 Score=58.45 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=24.0
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
..|.||.+|.|.+++|++||+|++||+|+.|+
T Consensus 59 ~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~ 90 (421)
T TIGR03794 59 DTIQSPGSGVVIDLDVEVGDQVKKGQVVARLF 90 (421)
T ss_pred eEEECCCCeEEEEEECCCcCEECCCCEEEEEC
Confidence 45777777777777777777777777777774
|
Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters. |
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=83.13 E-value=13 Score=45.78 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=61.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh-h-----------hHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-E-----------GILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~-~-----------gilk~ga~iv~al~~~~vP~i 2042 (2304)
...+.++......++++.++. ..+-+|+|.-.. .|+.|.+- +. . ...+....++.++..+.+|+|
T Consensus 29 ~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 29 RNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 358889999999999998875 566677775543 37777641 11 0 011123456778889999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++.+ |+ ++|.++|+++.
T Consensus 109 Aav~-G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 139 (275)
T PRK09120 109 AMVN-GWCFGGGFSPLVAC----DL--AIAADEAQFGL 139 (275)
T ss_pred EEEc-CEEechhHHHHHhC----CE--EEEeCCcEecC
Confidence 9998 34444455555543 55 66666666655
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=40 Score=41.16 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hh------hhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF------EGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~------~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
.+++++......++++.++. ..+-+|+|.-.. .|+.|..= +. +........++..+..+..|+|+.|- |.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~-G~ 104 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVA-GY 104 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc-cE
Confidence 57889999999999988865 566778886653 37777641 10 11112233456778899999999998 33
Q ss_pred cCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
..+||.-+++.+ |+ ++|.++++++.
T Consensus 105 a~GgG~~lalac----D~--~ia~~~a~f~~ 129 (257)
T PRK05862 105 ALGGGCELAMMC----DI--IIAADTAKFGQ 129 (257)
T ss_pred EeHHHHHHHHHC----CE--EEEeCCCEEeC
Confidence 444455555543 66 67777666655
|
|
| >PLN02226 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=82.79 E-value=1.7 Score=56.78 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=38.0
Q ss_pred eCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 675 DGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 675 ~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+..-+.++...-...|.||..|+|.+|++++||.|..||+|+.||.
T Consensus 122 Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 122 DEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred CCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 3334445555556789999999999999999999999999999974
|
|
| >cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=82.69 E-value=2.8 Score=52.19 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=39.6
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc--ccceeeecCCCcEEEEe
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM--Km~~~l~ap~~G~V~~i 738 (2304)
..++||-+| ++...++.|+.|++||+|++|--. .-..+++||.+|+|-.+
T Consensus 232 ~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 232 DWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 458999999 556889999999999999999432 11345899999998665
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=82.66 E-value=14 Score=45.28 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh---------hh---HHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EG---ILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~g---ilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++.+.......++++.+++ ..+-+|+|.-.+ .|+.|..-.. .. ..+....++..+..+..|+|+.
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47888889999999998876 445566665443 4777753110 00 1122346778889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||.-+++. .|+ ++|.++++++.
T Consensus 108 V~-G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 136 (265)
T PRK05674 108 VQ-GAAFGGALGLISC----CDM--AIGADDAQFCL 136 (265)
T ss_pred Ec-CEEEechhhHhhh----cCE--EEEeCCCEEeC
Confidence 98 3444445555554 366 77777777766
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=16 Score=44.88 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=64.6
Q ss_pred CCccCHHHHHHHHHHHHHhhcc-C-CCEEEEecCC-CCCCchhh-hh--------------hhHHHHHHHHHHHHHcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE-E-LPLFILANWR-GFSGGQRD-LF--------------EGILQAGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~-~-lPLv~l~d~~-Gf~~G~~~-e~--------------~gilk~ga~iv~al~~~~v 2039 (2304)
..+++++-.....++++.+... . +-+|+|.-.. .|+.|..= +. .........++.++..+.+
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 104 (266)
T PRK05981 25 MNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPC 104 (266)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 3588899999999999988753 3 6666665433 47766431 10 0112223557788899999
Q ss_pred CEEEEEcCCCcCCch-hhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2040 PVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
|+|+.|- |-+.|| .-+++. .|+ ++|.++++++..++
T Consensus 105 pvIaav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~~e~ 141 (266)
T PRK05981 105 PIVTAVN--GPAAGVGMSFALM----GDL--ILCARSAYFLQAFR 141 (266)
T ss_pred CEEEEEC--CEeehHHHHHHHh----CCE--EEecCCCEEechHh
Confidence 9999998 555554 444443 477 88888888775433
|
|
| >PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] | Back alignment and domain information |
|---|
Probab=82.58 E-value=0.82 Score=49.21 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEE
Q 000086 57 GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVW 136 (2304)
Q Consensus 57 G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~ 136 (2304)
...|+.+++-||+.|++|+ +++.......... ...+|+++.++..+ +..+ +.+.+-.++. ++|+
T Consensus 6 SHSALqIl~GAk~EGFrT~---------~ic~~~r~~~Y~~-f~~iDe~i~~d~f~---di~~-~~~q~~L~~~--N~I~ 69 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTI---------AICQKGREKFYRR-FPFIDEVIVLDSFS---DILS-EEVQEKLREM--NAIF 69 (124)
T ss_dssp STTHHHHHHHHHHTT--EE---------EEEETTCHHHHHT-TTT-SEEEEESSCG---HCCS-HHHHHHHHHT--TEEE
T ss_pred chHHHHHhhhHHHcCCcEE---------EEECCCCcchhhh-cCcCcEEEEeCCHH---HHHh-HHHHHHHHHC--CeEE
Confidence 5689999999999999984 4555332222222 23799999985321 2222 1334444343 6666
Q ss_pred eCCCcCCCCCchHHHHHH-CCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 137 PGWGHASEIPELPDTLST-KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 137 pG~G~~SEn~~la~~l~~-~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.-.|...+..- .+..++ ..++++|+.. .++.-.|...-+.+++++|||.|.
T Consensus 70 VPhgSfv~Y~G-~d~ie~~~~vP~FGNR~-lLrwEseR~~~~~lL~~AgI~~P~ 121 (124)
T PF06849_consen 70 VPHGSFVAYVG-YDRIENEFKVPIFGNRN-LLRWESERDKERNLLEKAGIPMPR 121 (124)
T ss_dssp --BTTHHHHH--HHHHHHT-SS-EES-CC-GGHCCCSHHHHHHHHHHTT-BB--
T ss_pred ecCCCeeEeec-HHHHhhcCCCCeecChH-HHHhhhhhhhHHHHHHHcCCCCCc
Confidence 54444333211 144555 7889998753 345555888888899999999997
|
Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A. |
| >PRK09439 PTS system glucose-specific transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=2.5 Score=48.50 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEEe--------------------
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK-------------------- 738 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~i-------------------- 738 (2304)
.......|.||+.|+++.+ -++-|.|-+ |+-+|+.=. +..|.||.+|+|..+
T Consensus 16 ~~~~~~~i~aP~~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIH 91 (169)
T PRK09439 16 KDTGTIEIIAPLSGEIVNI-EDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVH 91 (169)
T ss_pred ccccceEEEecCCeEEEEh-HHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q ss_pred ----------------eCCCCccCCCCEEEEEecC
Q 000086 739 ----------------MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 739 ----------------~~~G~~v~~G~~La~l~~~ 757 (2304)
+++||.|.+||+|+++.++
T Consensus 92 iGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 92 FGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred EeecccccCCCceEEEecCCCEEeCCCEEEEEcHH
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=82.43 E-value=2.5 Score=45.49 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=59.8
Q ss_pred cEEEEEC----chHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEEE-ccCCCCCCCccCHHH
Q 000086 49 HSILIAN----NGMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFVE-VPGGTNNNNYANVQL 122 (2304)
Q Consensus 49 ~kILIan----~G~~Av~iIrsar~~Gy~v~~~~~~i~~v-~vat~~D~~~~a~~ir~ADe~v~-vp~~~~~~sY~dvd~ 122 (2304)
|+|.|+| .+-.+.++++.+++.||+++..+..-..+ ..-++.+.... -.-.|-++. +|+ .....
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~---p~~iDlavv~~~~-------~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI---PEPIDLAVVCVPP-------DKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC---SST-SEEEE-S-H-------HHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCC---CCCCCEEEEEcCH-------HHHHH
Confidence 5788998 36679999999999998876322211111 01111121110 012333332 222 23567
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHH
Q 000086 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~ea 166 (2304)
+++-|.+.++.+||--.| .++.++.+.++++|+.++||.---
T Consensus 71 ~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 71 IVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcce
Confidence 777778889999997766 566678899999999999997543
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.32 E-value=1.8 Score=54.63 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK 722 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK 722 (2304)
...|.||..|+|.+++|++||.|+.||+|+.|+.++
T Consensus 45 ~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 456999999999999999999999999999998753
|
|
| >PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.05 E-value=1.3 Score=49.49 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=39.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEcccccee-eecCCCcEEEEe
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK 738 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~-l~ap~~G~V~~i 738 (2304)
-..=|.-|..+-..+.+|++|.+|+.+|-+.+=|-|+- ++||.+|+|..+
T Consensus 82 L~l~~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v 132 (150)
T PF09891_consen 82 LCLVPVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFV 132 (150)
T ss_dssp -EEEEEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEE
T ss_pred EEEEEecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEE
Confidence 34568889999999999999999999999999999986 899999999877
|
; PDB: 3D4R_D. |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=81.85 E-value=4.4 Score=48.04 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=34.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~ 1817 (2304)
.|+|+++.|.|.|+|-+++..||++++.+++.++..|.
T Consensus 71 kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv 108 (211)
T cd07019 71 KPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGI 108 (211)
T ss_pred CCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEE
Confidence 49999999999999999999999999999987766663
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=81.62 E-value=1.3 Score=57.90 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=38.2
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEee
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~ 739 (2304)
-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 37 h~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 37 YVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 3556667899999999999999976654 57899999999999993
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=81.61 E-value=18 Score=44.04 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
...+++.......++++.+++ ..+-+|+|.-.+ .|+.|.+=.. .........++..+..+.+|+|+.|-
T Consensus 23 ~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 100 (255)
T PRK09674 23 RNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVN-- 100 (255)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 358899999999999998875 566777776543 3777754211 01112234567788899999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++.+ |+ ++|.++++++.
T Consensus 101 G~a~GgG~~lalac----D~--~ia~~~a~f~~ 127 (255)
T PRK09674 101 GYALGAGCELALLC----DI--VIAGENARFGL 127 (255)
T ss_pred CEeehHHHHHHHhC----CE--EEecCCCEEeC
Confidence 55555 55545443 55 66666666554
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=81.60 E-value=56 Score=42.46 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=56.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh--h----hh-------HHHHHHHHHHHHHcCCCCEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F----EG-------ILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e--~----~g-------ilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.++..+-.....++++.+.. ..+-+|+|.-.. .|..|..-- . .+ ..+..-.+...+..+..|+|+
T Consensus 31 NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa 110 (381)
T PLN02988 31 NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVS 110 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 47888999999999988755 567777776543 477774211 0 01 011112344567889999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEE
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGN 2079 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~g 2079 (2304)
.|- |-..+||..+++.+ |+ .+|.++++++
T Consensus 111 ~v~-G~a~GGG~~Lal~~----D~--rvate~a~f~ 139 (381)
T PLN02988 111 ILN-GIVMGGGAGVSVHG----RF--RIATENTVFA 139 (381)
T ss_pred Eec-CeEeehhhHHhhcC----Ce--EEEcCCcEEe
Confidence 888 34444455555543 44 4555554443
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=22 Score=43.57 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=61.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-hh--------h---HHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FE--------G---ILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~~--------g---ilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++.++......++++.++. ..+-+|+|.-.. .|+.|..-. .. . ..+....++.++..+..|+|+.
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 27 NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47889999999999998875 456667775532 378776411 10 0 1122344678889999999999
Q ss_pred EcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 107 v~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 135 (262)
T PRK07468 107 IQ--GQAFGGGVGLISV----CDV--AIAVSGARFGL 135 (262)
T ss_pred EC--CEEEhHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 98 55555 4444444 365 66666666554
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=81.40 E-value=12 Score=45.40 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=61.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-----hhHHHH-HHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----EGILQA-GSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-----~gilk~-ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
..++++-..-..++++.++. ..+.+|+|.... .|+.|..-.. .+-.++ ...++..+..+..|+|+.|- |..
T Consensus 27 Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-G~a 105 (249)
T PRK07110 27 NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQ-GHA 105 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEec-Cce
Confidence 57888999999999998866 456777776533 4777764211 010011 13567788899999999998 344
Q ss_pred CCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2051 LRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2051 ~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.+||..+++.+ |+ +++.++++++.
T Consensus 106 ~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (249)
T PRK07110 106 IGGGLVLGLYA----DI--VVLSRESVYTA 129 (249)
T ss_pred echHHHHHHhC----CE--EEEeCCCEecC
Confidence 44555555554 55 66666665543
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=81.33 E-value=11 Score=45.95 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=84.4
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh--h-ccEEEEccCCCCCCCccCHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR--I-ADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir--~-ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
+||||+|+--.|.+++..+.+.|+ ++ +.++| +. +.-.. . ....+.+++ +.|.+.+.+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~--------~sv~t--~~---g~~~~~~~~~~~~v~~G~------lg~~~~l~~ 60 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VI--------VSVAT--SY---GGELLKPELPGLEVRVGR------LGDEEGLAE 60 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EE--------EEEEh--hh---hHhhhccccCCceEEECC------CCCHHHHHH
Confidence 489999999999999999999998 53 44444 21 11111 1 111333332 237899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+++++++++|+-. +- .|+....+ ...+.++++|||...+.-......+.
T Consensus 61 ~l~~~~i~~vIDA----TH--PfA~~is~--------------------na~~a~~~~~ipylR~eRp~~~~~~~----- 109 (249)
T PF02571_consen 61 FLRENGIDAVIDA----TH--PFAAEISQ--------------------NAIEACRELGIPYLRFERPSWQPEPD----- 109 (249)
T ss_pred HHHhCCCcEEEEC----CC--chHHHHHH--------------------HHHHHHhhcCcceEEEEcCCcccCCC-----
Confidence 9999999999933 11 13332211 23456778888877665422111000
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHH
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALF 259 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~ 259 (2304)
+. -..+.|.+|+.+.+.+.+ ++-|....-..+|....
T Consensus 110 --~~---~~~v~~~~eA~~~l~~~~------------~~~iflttGsk~L~~f~ 146 (249)
T PF02571_consen 110 --DN---WHYVDSYEEAAELLKELG------------GGRIFLTTGSKNLPPFV 146 (249)
T ss_pred --Ce---EEEeCCHHHHHHHHhhcC------------CCCEEEeCchhhHHHHh
Confidence 01 113789999988876554 23444444455555543
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=81.26 E-value=23 Score=43.58 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=61.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h----hhHH-HHHHHHHHHHHcCCCCEEEEEcCCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F----EGIL-QAGSTIVENLRTYKQPVFVYIPMMAE 2050 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~----~gil-k~ga~iv~al~~~~vP~i~~I~~~ge 2050 (2304)
..+.++-.....++++.++. ..+-+|+|.-.. .|+.|.+-. . .+-. .....++..+..+.+|+|+.|- |-
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~--G~ 109 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAIN--GF 109 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEEC--Ce
Confidence 47889999999999998875 456677775433 488876421 1 1111 1123456678889999999998 44
Q ss_pred CCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2051 LRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2051 ~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.| |..+++. .|+ ++|.++++++.
T Consensus 110 a~GgG~~lal~----cD~--ria~~~a~f~~ 134 (265)
T PLN02888 110 AITAGFEIALA----CDI--LVASRGAKFID 134 (265)
T ss_pred eechHHHHHHh----CCE--EEecCCCEecC
Confidence 545 5544544 366 77777776655
|
|
| >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Probab=80.97 E-value=1.9 Score=42.08 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
...+.||..|+|+++.++.|+.|..|++++.|
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45699999999999999999999999999864
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. |
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=74 Score=39.10 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhhh-h------hHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-E------GILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e~-~------gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++.++......++++.++. -.+-+|+|.-.. .|+.|..-.. . ........++..+..+.+|+|+.|-
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~-- 102 (258)
T PRK06190 25 RNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAIN-- 102 (258)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 358899999999999999875 456677776543 3777654211 0 0011234567789999999999998
Q ss_pred CcCCch-hhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.|| .-+++. .|+ ++|.++++++.
T Consensus 103 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 129 (258)
T PRK06190 103 GAAVTGGLELALA----CDI--LIASERARFAD 129 (258)
T ss_pred CEeecHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 555554 444443 355 66666666553
|
|
| >KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.12 E-value=1.3 Score=54.58 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=33.2
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
.+.-.-.|.||..|+|.+++|++||+|+.||.|+.|+--
T Consensus 111 TDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 111 TDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred ccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 333345688999999999999999999999999999743
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=80.08 E-value=29 Score=42.35 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=60.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh--hh----h---HHHHHHH-HHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE----G---ILQAGST-IVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e--~~----g---ilk~ga~-iv~al~~~~vP~i~~I~ 2046 (2304)
.++.++......++++.+.+ ..+-+|+|.-.+ .|+.|.+=. .. + ....... +...+..+.+|+|+.|-
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 100 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQ 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEc
Confidence 58899999999999998765 456666665543 377765311 00 0 1111122 22357788999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ ++|.++++++.
T Consensus 101 -G~a~GgG~~lal~c----D~--ria~~~a~f~~ 127 (255)
T PRK06563 101 -GYCLTLGIELMLAA----DI--VVAADNTRFAQ 127 (255)
T ss_pred -CeeecHHHHHHHhC----CE--EEecCCCEEeC
Confidence 34445555555553 66 77777777665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2304 | ||||
| 3tdc_A | 762 | Crystal Structure Of Human Acetyl-Coa Carboxylase 2 | 0.0 | ||
| 3ff6_A | 760 | Human Acc2 Ct Domain With Cp-640186 Length = 760 | 0.0 | ||
| 2x24_A | 793 | Bovine Acc2 Ct Domain In Complex With Inhibitor Len | 0.0 | ||
| 4asi_A | 769 | Crystal Structure Of Human Acaca C-Terminal Domain | 0.0 | ||
| 3tv5_A | 769 | Crystal Structure Of The Humanized Carboxyltransfer | 0.0 | ||
| 1w93_A | 553 | Crystal Structure Of Biotin Carboxylase Domain Of A | 1e-179 | ||
| 1w96_A | 554 | Crystal Structure Of Biotin Carboxylase Domain Of A | 1e-179 | ||
| 1w2x_A | 758 | Crystal Structure Of The Carboxyltransferase Domain | 1e-178 | ||
| 3h0j_A | 769 | Crystal Structure Of The Carboxyltransferase Domain | 1e-178 | ||
| 3pgq_A | 764 | Crystal Structure Of The Carboxyltransferase Domain | 1e-177 | ||
| 1uyr_A | 737 | Acetyl-Coa Carboxylase Carboxyltransferase Domain I | 1e-177 | ||
| 1uyv_A | 737 | Acetyl-Coa Carboxylase Carboxyltransferase Domain L | 1e-177 | ||
| 2hjw_A | 573 | Crystal Structure Of The Bc Domain Of Acc2 Length = | 1e-177 | ||
| 3jrx_A | 587 | Crystal Structure Of The Bc Domain Of Acc2 In Compl | 1e-176 | ||
| 3jrw_A | 587 | Phosphorylated Bc Domain Of Acc2 Length = 587 | 1e-176 | ||
| 2yl2_A | 540 | Crystal Structure Of Human Acetyl-Coa Carboxylase 1 | 1e-176 | ||
| 1od2_A | 805 | Acetyl-Coa Carboxylase Carboxyltransferase Domain L | 1e-175 | ||
| 3gid_A | 540 | The Biotin Carboxylase (Bc) Domain Of Human Acetyl- | 1e-173 | ||
| 1uys_A | 737 | Acetyl-Coa Carboxylase Carboxyltransferase Domain I | 1e-171 | ||
| 3tw7_A | 1165 | Structure Of Rhizobium Etli Pyruvate Carboxylase T8 | 7e-61 | ||
| 2qf7_A | 1165 | Crystal Structure Of A Complete Multifunctional Pyr | 8e-61 | ||
| 3va7_A | 1236 | Crystal Structure Of The Kluyveromyces Lactis Urea | 4e-59 | ||
| 2dzd_A | 461 | Crystal Structure Of The Biotin Carboxylase Domain | 4e-57 | ||
| 3jzf_A | 486 | Crystal Structure Of Biotin Carboxylase From E. Col | 4e-54 | ||
| 2gpw_A | 469 | Crystal Structure Of The Biotin Carboxylase Subunit | 8e-54 | ||
| 3rup_B | 452 | Crystal Structure Of E.Coli Biotin Carboxylase In C | 2e-53 | ||
| 2gps_A | 469 | Crystal Structure Of The Biotin Carboxylase Subunit | 2e-53 | ||
| 1bnc_A | 449 | Three-Dimensional Structure Of The Biotin Carboxyla | 3e-53 | ||
| 3rv4_A | 452 | Crystal Structure Of E.Coli Biotin Carboxylase R16e | 3e-53 | ||
| 1dv2_A | 452 | The Structure Of Biotin Carboxylase, Mutant E288k, | 5e-53 | ||
| 3g8c_A | 444 | Crystal Stucture Of Biotin Carboxylase In Complex W | 6e-53 | ||
| 3g8d_A | 444 | Crystal Structure Of The Biotin Carboxylase Subunit | 3e-52 | ||
| 4hnt_A | 1173 | Crystal Structure Of F403a Mutant Of S. Aureus Pyru | 4e-52 | ||
| 3bg5_A | 1173 | Crystal Structure Of Staphylococcus Aureus Pyruvate | 4e-52 | ||
| 4hnu_A | 1173 | Crystal Structure Of K442e Mutant Of S. Aureus Pyru | 4e-52 | ||
| 3ho8_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 4e-52 | ||
| 3hbl_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 4e-52 | ||
| 3hb9_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 5e-52 | ||
| 3n6r_A | 681 | Crystal Structure Of The Holoenzyme Of Propionyl-co | 6e-52 | ||
| 2vpq_A | 451 | Crystal Structure Of Biotin Carboxylase From S. Aur | 6e-52 | ||
| 2vqd_A | 464 | Crystal Structure Of Biotin Carboxylase From Pseudo | 2e-51 | ||
| 4hnv_A | 1173 | Crystal Structure Of R54e Mutant Of S. Aureus Pyruv | 2e-51 | ||
| 3u9s_A | 655 | Crystal Structure Of P. Aeruginosa 3-methylcrotonyl | 3e-48 | ||
| 1ulz_A | 451 | Crystal Structure Of The Biotin Carboxylase Subunit | 1e-43 | ||
| 3ouz_A | 446 | Crystal Structure Of Biotin Carboxylase-Adp Complex | 4e-40 | ||
| 2dn8_A | 100 | Solution Structure Of Rsgi Ruh-053, An Apo-Biotin C | 2e-14 | ||
| 1x0u_A | 522 | Crystal Structure Of The Carboxyl Transferase Subun | 3e-13 | ||
| 3n6r_B | 531 | Crystal Structure Of The Holoenzyme Of Propionyl-co | 5e-08 | ||
| 1vrg_A | 527 | Crystal Structure Of Propionyl-coa Carboxylase, Bet | 1e-07 | ||
| 2a7s_A | 548 | Crystal Structure Of The Acyl-Coa Carboxylase, Accd | 1e-07 | ||
| 2bzr_A | 548 | Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Ca | 2e-07 | ||
| 2kcc_A | 84 | Solution Structure Of Biotinoyl Domain From Human A | 4e-07 | ||
| 1on3_A | 523 | Transcarboxylase 12s Crystal Structure: Hexamer Ass | 1e-06 | ||
| 1ce8_A | 1073 | Carbamoyl Phosphate Synthetase From Escherichis Col | 2e-05 | ||
| 1jdb_B | 1073 | Carbamoyl Phosphate Synthetase From Escherichia Col | 2e-05 | ||
| 1a9x_A | 1073 | Carbamoyl Phosphate Synthetase: Caught In The Act O | 2e-05 | ||
| 3iav_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422v Lengt | 1e-04 | ||
| 1xnw_A | 530 | Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo | 2e-04 | ||
| 3gf3_A | 588 | Glutaconyl-Coa Decarboxylase A Subunit From Clostri | 3e-04 | ||
| 3ib9_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422l Lengt | 3e-04 | ||
| 3ibb_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422a Lengt | 3e-04 | ||
| 3u9r_B | 555 | Crystal Structure Of P. Aeruginosa 3-methylcrotonyl | 5e-04 | ||
| 3mfm_C | 530 | Crystal Structures And Mutational Analyses Of Acyl- | 7e-04 | ||
| 1xnv_A | 530 | Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo | 8e-04 |
| >pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2 Length = 762 | Back alignment and structure |
|
| >pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186 Length = 760 | Back alignment and structure |
|
| >pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor Length = 793 | Back alignment and structure |
|
| >pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain Length = 769 | Back alignment and structure |
|
| >pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase Domain Of Yeast Acetyl-Coa Caroxylase In Complex With Compound 1 Length = 769 | Back alignment and structure |
|
| >pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae Length = 553 | Back alignment and structure |
|
| >pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae In Complex With Soraphen A Length = 554 | Back alignment and structure |
|
| >pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186 Length = 758 | Back alignment and structure |
|
| >pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of Acetyl-Coenzyme A Carboxylase In Complex With Compound 2 Length = 769 | Back alignment and structure |
|
| >pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S. Cerevisiae Acetyl Coa Carboxylase In Complex With Pinoxaden Length = 764 | Back alignment and structure |
|
| >pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In Complex With Inhibitor Diclofop Length = 737 | Back alignment and structure |
|
| >pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i V1967i Mutant Length = 737 | Back alignment and structure |
|
| >pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 Length = 573 | Back alignment and structure |
|
| >pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With Soraphen A Length = 587 | Back alignment and structure |
|
| >pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2 Length = 587 | Back alignment and structure |
|
| >pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain Length = 540 | Back alignment and structure |
|
| >pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain Length = 805 | Back alignment and structure |
|
| >pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa Carboxylase 2 (Acc2) In Complex With Soraphen A Length = 540 | Back alignment and structure |
|
| >pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In Complex With Inhibitor Haloxyfop Length = 737 | Back alignment and structure |
|
| >pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165 | Back alignment and structure |
|
| >pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165 | Back alignment and structure |
|
| >pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea Carboxylase Length = 1236 | Back alignment and structure |
|
| >pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of Pyruvate Carboxylase Length = 461 | Back alignment and structure |
|
| >pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In Complex With Benzimidazoles Series Length = 486 | Back alignment and structure |
|
| >pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 | Back alignment and structure |
|
| >pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 | Back alignment and structure |
|
| >pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase Subunit Of Acetyl-Coa Carboxylase Length = 449 | Back alignment and structure |
|
| >pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 | Back alignment and structure |
|
| >pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With Biotin, Bicarbonate, Adp And Mg Ion Length = 444 | Back alignment and structure |
|
| >pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli Length = 444 | Back alignment and structure |
|
| >pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150 | Back alignment and structure |
|
| >pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681 | Back alignment and structure |
|
| >pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus Complexed With Amppnp Length = 451 | Back alignment and structure |
|
| >pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas Aeruginosa Complexed With Ampcp Length = 464 | Back alignment and structure |
|
| >pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex Length = 655 | Back alignment and structure |
|
| >pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of Pyruvate Carboxylase Length = 451 | Back alignment and structure |
|
| >pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From Campylobacter Jejuni Length = 446 | Back alignment and structure |
|
| >pdb|2DN8|A Chain A, Solution Structure Of Rsgi Ruh-053, An Apo-Biotin Carboxy Carrier Protein From Human Transcarboxylase Length = 100 | Back alignment and structure |
|
| >pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of Putative Pcc Of Sulfolobus Tokodaii Length = 522 | Back alignment and structure |
|
| >pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 531 | Back alignment and structure |
|
| >pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta Subunit (tm0716) From Thermotoga Maritima At 2.30 A Resolution Length = 527 | Back alignment and structure |
|
| >pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From Mycobacterium Tuberculosis Length = 548 | Back alignment and structure |
|
| >pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Carboxylase Beta-Subunit From Mycobacterium Tuberculosis Length = 548 | Back alignment and structure |
|
| >pdb|2KCC|A Chain A, Solution Structure Of Biotinoyl Domain From Human Acetyl- Coa Carboxylase 2 Length = 84 | Back alignment and structure |
|
| >pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly And Substrate Binding To A Multienzyme Core (With Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound) Length = 523 | Back alignment and structure |
|
| >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 | Back alignment and structure |
|
| >pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073 | Back alignment and structure |
|
| >pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073 | Back alignment and structure |
|
| >pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v Length = 530 | Back alignment and structure |
|
| >pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #2, Mutant D422i Length = 530 | Back alignment and structure |
|
| >pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co-Crystallized With Glutaconyl-Coa Length = 588 | Back alignment and structure |
|
| >pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l Length = 530 | Back alignment and structure |
|
| >pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a Length = 530 | Back alignment and structure |
|
| >pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc), Beta Subunit Length = 555 | Back alignment and structure |
|
| >pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa Carboxylase Subunit Of Streptomyces Coelicolor Length = 530 | Back alignment and structure |
|
| >pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #1 Length = 530 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Length = 793 | Back alignment and structure |
|---|
Score = 921 bits (2383), Expect = 0.0
Identities = 363/838 (43%), Positives = 504/838 (60%), Gaps = 68/838 (8%)
Query: 1482 SKHTVVYHSVAVR----GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLA 1537
S H +HS + G HG+ +N Y + +L KR A+ TTY YDFP +
Sbjct: 3 SSHHHHHHSSGLVPRGSGPQHGMLINTPYVTKDLLQAKRFQAQSLGTTYVYDFPEM---- 58
Query: 1538 STCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFETALEQSWASQFPNMRPKDKALLKVT 1597
F AL + W S P+ PKD L T
Sbjct: 59 ---------------------------------FRQALFKMWPS--PDKYPKDI--LTYT 81
Query: 1598 ELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGS 1657
EL D G LV + R PG N +GMVA+ M + T E+P GR I++++ND+TF+ GS
Sbjct: 82 ELVL-DPQG----QLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDITFRIGS 136
Query: 1658 FGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNY 1717
FGP ED +L ++LA A+ +P +YLAANSGARIG+AEE+K F++ W D +P +G Y
Sbjct: 137 FGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPEDPHKGIKY 196
Query: 1718 VYLTPEDYARIGSSVIAHEMKL-ESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1776
+YLTP+DY RI S H + E GE+R+V+ I+GKE+GLGVENL GSG IAG S+
Sbjct: 197 LYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIGKEEGLGVENLRGSGMIAGETSQD 256
Query: 1777 YKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLG 1836
Y E T++ V+ R +GIGAYL RLG R IQ + IILTG +ALNK+LGR+VY+S+ QLG
Sbjct: 257 YDEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTGATALNKVLGRDVYTSNNQLG 316
Query: 1837 GPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS 1896
G +IM NGV H+TV DD EG+ IL+WLSY+P +P+++P DP DR +E+ P
Sbjct: 317 GVQIMHHNGVSHVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRG 376
Query: 1897 -CDPRAAICGFLD--NNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVET 1953
DPR + G G W G FD+ SF E + WA+TVVTGRARLGGIPVG++A ET
Sbjct: 377 PYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQTVVTGRARLGGIPVGVIAAET 436
Query: 1954 QTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 2013
+TV V+PADP LDS +++ QAGQVWFPDSA KTAQA+ DFNRE+LPL I ANWRGFS
Sbjct: 437 RTVELVVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFS 496
Query: 2014 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYAD 2073
GG +D+++ +L+ G+ IV+ LR Y+QPV +YIP AE+RGG+W V+D+ IN IEMYAD
Sbjct: 497 GGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYAD 556
Query: 2074 RTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQI 2133
R ++ +VLEPEG +EIK++ K+L++ + RLD L+ +L + + + L+ Q+
Sbjct: 557 RESRASVLEPEGTVEIKYQKKDLVKTIRRLDPISKKLVEQLGVS--ELSDTDRKELEGQL 614
Query: 2134 KAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSL 2193
KARE LLP Y QVA FA+LHDT+ RM KGVI ++++W +RSF RLRR + ES +
Sbjct: 615 KAREDLLLPMYHQVALHFADLHDTAGRMLEKGVIYDILEWKTARSFLYWRLRRLLLESQV 674
Query: 2194 VKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYE----- 2248
+ + A + L+H M+++WF+++E A K W +++T W +
Sbjct: 675 KQEVLRACPE-LSHMHVQSMLRRWFVETEGA-VKAYLWDNNQTVVQWLEAHGQASDVLHS 732
Query: 2249 ---KKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2303
+ + L L + + + + L + + P+ R Q+I +S
Sbjct: 733 TIRENITCLRRDSALKTIQGLVQ--ENPELAMDSLVYVSQHISPAERAQVIHLLSTTD 788
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 | Back alignment and structure |
|---|
Score = 912 bits (2359), Expect = 0.0
Identities = 358/813 (44%), Positives = 485/813 (59%), Gaps = 64/813 (7%)
Query: 1495 GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLS 1554
G +H + Y L KR A TTY YDFP +
Sbjct: 1 GSMHLRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPEL--------------------- 39
Query: 1555 ISDCKSCSCEKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVL 1614
F A W + +++ D EL D++G L
Sbjct: 40 ----------------FRQASSSQWKNFSADVKLTDD-FFISNELIE-DENGE----LTE 77
Query: 1615 VERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLAC 1674
VER PG N IGMVA+ + + TPE+P GR ++VAND+TFK GSFGP+ED FF VT+ A
Sbjct: 78 VEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYAR 137
Query: 1675 AKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG----S 1730
+ +P IYLAANSGARIG+AEE+ F++ W D NPD+GF Y+YLT E +
Sbjct: 138 KRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKE 197
Query: 1731 SVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRT 1790
+ + E + +GE R+V+ +I+G EDGLGVE L GSG IAGA SRAY + FT+T VT R+
Sbjct: 198 NSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRS 257
Query: 1791 VGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLT 1850
VGIGAYL RLG R IQ QPIILTG A+NK+LGREVY+S++QLGG +IM NGV HLT
Sbjct: 258 VGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGVSHLT 317
Query: 1851 VSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS--CDPRAAICGFLD 1908
DDL G+ I++W+SYVP +PI+ D DRPV++ P N D R I G
Sbjct: 318 AVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRET 377
Query: 1909 NNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1968
+G + G+FDK SF ETL GWA+ VV GRARLGGIP+G++ VET+TV +IPADP +
Sbjct: 378 ESG-FEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPN 436
Query: 1969 SHERVVPQAGQVWFPDSATKTAQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAG 2027
S E ++ + GQVW P+SA KTAQA+ DFN E+LP+ ILANWRGFSGGQRD+F +L+ G
Sbjct: 437 SAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYG 496
Query: 2028 STIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087
S IV+ L YKQP+ +YIP ELRGG+WVVVD IN+D +EMYAD A+ VLEP+GM+
Sbjct: 497 SFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMV 556
Query: 2088 EIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQV 2147
IKFR ++LL+ M RLD K +L ++L + + + +Q+ RE++LLP Y Q+
Sbjct: 557 GIKFRREKLLDTMNRLDDKYRELRSQLSNKSLAPEV--HQQISKQLADRERELLPIYGQI 614
Query: 2148 ATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTH 2207
+ +FA+LHD S RM AKGVI + ++W ++R FF RLRRR+ E L+K L+ G+ +
Sbjct: 615 SLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQVGE-ASR 673
Query: 2208 KSAIEMIKQWFLDSEIARGKEGAWLDDETFFTW-KDDSRNYEKKVQELGVQKVLLQLTNI 2266
I I+ W+ S DD TW +++ + + K++ L ++ L
Sbjct: 674 LEKIARIRSWYPASV-------DHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKK 726
Query: 2267 GNSTSDLQALPQGLATLLSKVDPSCREQLIGEI 2299
SD GL+ ++ + +E+L+ +
Sbjct: 727 I--RSDHDNAIDGLSEVIKMLSTDDKEKLLKTL 757
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Length = 587 | Back alignment and structure |
|---|
Score = 810 bits (2093), Expect = 0.0
Identities = 300/578 (51%), Positives = 399/578 (69%), Gaps = 20/578 (3%)
Query: 7 RSAMAGLG-RGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
R +M+GL G + + + ++ EF GG + I +LIANNG+AAVK +R
Sbjct: 14 RPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMR 73
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR WAYE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LIV+
Sbjct: 74 SIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVD 133
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L G+ FLGPP+ +M ALGDKI S+++AQ V
Sbjct: 134 IAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQV 193
Query: 186 PTLPWSGSHVKIP------PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239
PTLPWSGS + + + +++P+DVY + CV +E + + + +G+P MIKAS
Sbjct: 194 PTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASE 253
Query: 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 299
GGGGKGIRK + ++ LF+QVQ E+PGSPIF+MK+A +RHLEVQ+L DQYGN +L
Sbjct: 254 GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLF 313
Query: 300 SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359
RDCS+QRRHQKI+EE P T+APL + +EQ A RLAK V YV A TVEYLYS + G +
Sbjct: 314 GRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS-QDGSF 372
Query: 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419
+FLELNPRLQVEHP TE IA++NLPAAQ+ + MG+PL ++ +IR YG G
Sbjct: 373 HFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG------- 425
Query: 420 TSVIATPFDFDQAEST-RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS 478
TP F+ + +GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFS
Sbjct: 426 ----VTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFS 481
Query: 479 VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASD 538
V + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I+LL
Sbjct: 482 VAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETES 541
Query: 539 YRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKA 576
++ N I TGWLD IA +V+AE+P L V+ +
Sbjct: 542 FQNNDIDTGWLDYLIAEKVQAEKPDIMLGVLEHHHHHH 579
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Length = 540 | Back alignment and structure |
|---|
Score = 799 bits (2067), Expect = 0.0
Identities = 288/534 (53%), Positives = 377/534 (70%), Gaps = 19/534 (3%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
++ EF GG + I +LIANNG+AAVK +RSIR WAYE F E+AI V M
Sbjct: 19 HRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVM 78
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
TPED++ NAE+I++AD +V VPGG NNNNYANV+LIV++A+ V AVW GWGHASE P
Sbjct: 79 VTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENP 138
Query: 147 ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIP------PE 200
+LP+ L G+ FLGPP+ +M ALGDKI S+++AQ VPTLPWSGS + + +
Sbjct: 139 KLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQ 198
Query: 201 SCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFK 260
+++P+DVY + CV +E + + + +G+P MIKAS GGGGKGIRK + ++ LF+
Sbjct: 199 GKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFR 258
Query: 261 QVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITV 320
QVQ E+PGSPIF+MK+A +RHLEVQ+L DQYGN +L RDCS+QRRHQKI+EE P T+
Sbjct: 259 QVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATI 318
Query: 321 APLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE 380
APL + +EQ A RLAK V YV A TVEYLYS + G ++FLELNPRLQVEHP TE IA+
Sbjct: 319 APLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS-QDGSFHFLELNPRLQVEHPCTEMIAD 377
Query: 381 INLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAEST-RPKG 439
+NLPAAQ+ + MG+PL ++ +IR YG G TP F+ + +G
Sbjct: 378 VNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG-----------VTPISFETPSNPPLARG 426
Query: 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAF 499
H +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV + GG+HEF+DSQFGH F++
Sbjct: 427 HVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSW 486
Query: 500 GESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
GE+R AI+NMV+ LKE+ IRG+ RT V+Y I+LL ++ N I TGWLD I
Sbjct: 487 GENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLI 540
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Length = 554 | Back alignment and structure |
|---|
Score = 793 bits (2051), Expect = 0.0
Identities = 293/531 (55%), Positives = 379/531 (71%), Gaps = 8/531 (1%)
Query: 28 SPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87
S + +F +S GG I ILIANNG+AAVK IRS+R WAYETFG ++ + VAMA
Sbjct: 27 DKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMA 86
Query: 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPE 147
TPED+ NAE+IR+ADQ++EVPGGTNNNNYANV LIV++AE VDAVW GWGHASE P
Sbjct: 87 TPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPL 146
Query: 148 LPDTL--STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIP---PESC 202
LP+ L S + +IF+GPP +M +LGDKI S+++AQ+A VP +PWSG+ V ++
Sbjct: 147 LPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTG 206
Query: 203 LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262
LV++ DD+Y++ C + E+ + + +G+P MIKAS GGGGKGIR+V +++ AL+ Q
Sbjct: 207 LVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQA 266
Query: 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP 322
E+PGSPIFIMK+A ++RHLEVQLL DQYG +L RDCSVQRRHQKIIEE P+T+A
Sbjct: 267 ANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAK 326
Query: 323 LETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEIN 382
ET ++E+AA RL K V YV A TVEYLYS + G++YFLELNPRLQVEHP TE ++ +N
Sbjct: 327 AETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVN 386
Query: 383 LPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442
LPAAQ+ + MGIP+ +I +IR YGM + + T + PKGHC
Sbjct: 387 LPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFK---TQDATKKQRRPIPKGHCT 443
Query: 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502
A R+TSEDP+DGFKP+ G + EL+F+S NVW YFSV + G IH FSDSQFGH+FAFGE+
Sbjct: 444 ACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGEN 503
Query: 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I TGWLD I
Sbjct: 504 RQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 554
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 | Back alignment and structure |
|---|
Score = 382 bits (982), Expect = e-115
Identities = 192/755 (25%), Positives = 309/755 (40%), Gaps = 122/755 (16%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ ILIAN G A + I++ R T VA+ + D A H+++AD+ V
Sbjct: 2 FNKILIANRGEIACRVIKTARKMGIST---------VAIYSDAD--KQALHVQMADEAVH 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ N +Y + ++ T AV PG+G SE + + L +G+IF+GPP ++
Sbjct: 51 IGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
A+GDKI S IAQ ANV T+P G + +EA+
Sbjct: 111 EAMGDKITSKKIAQEANVSTVP--GYM-------------------GLIEDADEAVKISN 149
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRHL 283
+GYP MIKAS GGGGKG+R ND E R F+ + E S IFI K +Q RH+
Sbjct: 150 QIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q+LCD +GN L R+CS+QRR+QK++EE P T + + + A LAK V Y
Sbjct: 210 EIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYA 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A TVE++ +YFLE+N RLQVEHPVTE I ++L + V G PL
Sbjct: 270 SAGTVEFIVD-GQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPL------- 321
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q + + G + R+ +EDP GF P+ G++
Sbjct: 322 ------------------------SITQGD-VKLTGWAIENRLYAEDPYRGFLPSIGRLT 356
Query: 464 ELSFKSKPNVWAYFS--------------------VKSGGGIHEFSDSQFGHVFAFGESR 503
++ V GG I + D + + +R
Sbjct: 357 RYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTR 416
Query: 504 ALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPP 563
A AI M + L ++ G I N+ + ++ + + T ++ P
Sbjct: 417 AAAIEAMRIALDSFEVEG-IGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLP 475
Query: 564 ----WYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRI 619
++ A+++ + VS G++ H V ++ + ++G+ + +
Sbjct: 476 ETDLRRVAAAAAAMHRVAEIRRTRVS--------GRMDN-HERRVGTEWVVTLQGADFPV 526
Query: 620 DMVRRGPGSYTLRMNESEIEAEIH-TLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678
+ GS + S + T D + +DG V+ + + G R+ G
Sbjct: 527 TIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKISGGFRIRTRGAD 586
Query: 679 CLLQ----------------NDHDPSK-LVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721
+ D SK L+ P +++ V G + +E M
Sbjct: 587 LKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM 646
Query: 722 KMCMPLLSPASGVLQ-FKMAEGQAMQAGELIARLD 755
KM L + GV+ + G ++ ++I +
Sbjct: 647 KMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461 | Back alignment and structure |
|---|
Score = 352 bits (906), Expect = e-108
Identities = 154/517 (29%), Positives = 243/517 (47%), Gaps = 75/517 (14%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
+ I +L+AN G A IR R TE I VA+ + ED+ + H AD+
Sbjct: 4 RRIRKVLVANRGEIA---IRVFRA------CTELGIRTVAIYSKEDV--GSYHRYKADEA 52
Query: 106 VEV-PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPA 164
V G Y +++ I+E+A+ VDA+ PG+G SE + +GIIF+GP
Sbjct: 53 YLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNE 112
Query: 165 TSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIA 224
+ GDK+ + A A +P +P GS V E+ +A
Sbjct: 113 NHLDMFGDKVKARHAAVNAGIPVIP--GS-------------------DGPVDGLEDVVA 151
Query: 225 SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQS 280
+ GYP +IKA+ GGGG+G+R V + EV+ F++ + E GS +++ K+
Sbjct: 152 FAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211
Query: 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV 340
+H+EVQ+L D GN+ L+ RDCSVQRRHQK++E P E +++ +AA +L + V
Sbjct: 212 KHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSV 271
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
YV A TVE+L E+YF+E+NPR+QVEH +TE I I++ +Q+ + G L
Sbjct: 272 GYVNAGTVEFLV--SGDEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLH--- 326
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
Q E R G+ + RVT+EDP + F P +G
Sbjct: 327 ----------------------SHEVGIPKQ-EDIRINGYAIQSRVTTEDPLNNFMPDTG 363
Query: 461 KVQELSFKSKPNV-----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515
K+ V + G I + DS + + + A M+ L+
Sbjct: 364 KIMAYRSGGGFGVRLDAGNGF----QGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLR 419
Query: 516 EIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
E +IRG I+TN+ + +++ + + T ++D+
Sbjct: 420 EFRIRG-IKTNIPFLENVVQHPKFLSGEYDTSFIDTT 455
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 | Back alignment and structure |
|---|
Score = 368 bits (947), Expect = e-106
Identities = 158/546 (28%), Positives = 256/546 (46%), Gaps = 85/546 (15%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
PI IL+AN A++ R+ E I VA+ ED A H AD+
Sbjct: 12 GPISKILVANRSEIAIRVFRAAN---------ELGIKTVAIWAEEDK--LALHRFKADES 60
Query: 106 VEV-PGGTNNNN------YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGII 158
+V G + Y ++ ++ +A+++ DA+ PG+G SE PE D + GII
Sbjct: 61 YQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGII 120
Query: 159 FLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYT 218
F+GP A +M LG+K+ + +A + VP +P + +
Sbjct: 121 FIGPKADTMRQLGNKVAARNLAISVGVPVVP--AT-------------------EPLPDD 159
Query: 219 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIM 274
E +GYP M+KASWGGGG+G+R + ++ ++ + + E G +++
Sbjct: 160 MAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLE 219
Query: 275 KVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAAR 334
K+ ++RH+E Q+L D +GNV L RDCSVQRR+QK++E P ++L +
Sbjct: 220 KLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSL 279
Query: 335 RLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394
++A NY+GA TVEYL +TG++YF+E+NPR+QVEH VTE + I++ AQ+ + G
Sbjct: 280 KIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGA 339
Query: 395 PLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDG 454
+ +Q E R GH + RVT+EDP+
Sbjct: 340 AIG-------------------------TPQSGVPNQ-EDIRLNGHALQCRVTTEDPEHN 373
Query: 455 FKPTSGKVQELSFKSKPNV-----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIAN 509
F P G++ S + +Y SG I + D V A+ + AI+
Sbjct: 374 FIPDYGRITAYRSASGFGIRLDGGTSY----SGAIITRYYDPLLVKVTAWAPNPLEAISR 429
Query: 510 MVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR------IAMRVRAERPP 563
M L+E +IRG + TN+ + ++ +R+N T ++D+ + + RA +
Sbjct: 430 MDRALREFRIRG-VATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQVKRQDRATKLL 488
Query: 564 WYLSVV 569
YL+ V
Sbjct: 489 TYLADV 494
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 | Back alignment and structure |
|---|
Score = 342 bits (880), Expect = e-104
Identities = 152/517 (29%), Positives = 239/517 (46%), Gaps = 77/517 (14%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ +LIAN G AV+ IR+ R + I VA+ + D +A H +IAD+
Sbjct: 1 MKKVLIANRGEIAVRIIRACR---------DLGIQTVAIYSEGDK--DALHTQIADEAYC 49
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
V + ++Y N+ I+ +A T D V PG+G +E + + + F+GP S+
Sbjct: 50 VGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+G K + ANVP +P GS + EA +
Sbjct: 110 QKMGIKDVAKAEMIKANVPVVP--GS-------------------DGLMKDVSEAKKIAK 148
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP +IKA+ GGGGKGIR ++ E+ F+ + E G+ +++ K RH+
Sbjct: 149 KIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHI 208
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q++ D YGNV L RDC++QRR QK++EE P + ET +++ AA R AK VNY
Sbjct: 209 EIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYE 268
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A T+E++Y + ++YF+E+N R+QVEHPVTE + I+L Q+ V MG L
Sbjct: 269 NAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVL------- 321
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
+ Q E + GH + R+ +E+P F P+ GK++
Sbjct: 322 ------------------------PYKQ-EDIKLTGHAIEFRINAENPYKNFMPSPGKIE 356
Query: 464 ELSFKSKPNV----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519
+ V Y + I + DS + +R AI + L E +
Sbjct: 357 QYLAPGGYGVRIESACY----TNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVV 412
Query: 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556
G I T + + I LL+ +R K +T +L+ M
Sbjct: 413 LG-IDTTIPFHIKLLNNDIFRSGKFNTNFLEQNSIMN 448
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 | Back alignment and structure |
|---|
Score = 365 bits (939), Expect = e-104
Identities = 148/530 (27%), Positives = 245/530 (46%), Gaps = 76/530 (14%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
S + KKP ++LIAN G AV+ +++++ ++ VA+
Sbjct: 10 HSSGLVPRGSHMASEAQKKKPFETVLIANRGEIAVRIMKTLKRMGIKS---------VAV 60
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
+ D ++H+ AD V + G T Y ++ I+ A+ T A+ PG+G SE
Sbjct: 61 YSDPD--KYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENA 118
Query: 147 ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206
+ D S + I+F+GP ++ LG K + IA+ A VP +P SG
Sbjct: 119 DFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGL------------- 165
Query: 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV 266
+ +EA + + YP M+K++ GGGG G++KV ++D++ +F+ VQ +
Sbjct: 166 ---------IKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQG 216
Query: 267 PGS----PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP 322
+F+ + + +RH+E+Q++ D +G A+ RDCS+QRR+QK+IEE P P
Sbjct: 217 KSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLP 276
Query: 323 LETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEIN 382
T K+ A+ RL + Y A TVE++Y + E+YFLE+N RLQVEHP+TE + ++
Sbjct: 277 EATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPITEMVTGLD 336
Query: 383 LPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442
L + + DFD + G +
Sbjct: 337 LVEWMLRIAANDSP-------------------------------DFDNTK-IEVSGASI 364
Query: 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNV--WAYFSVKSGGGIHEFSDSQFGHVFAFG 500
R+ +E+P F+P+ G++ +SF S V W VK G + D + G
Sbjct: 365 EARLYAENPVKDFRPSPGQLTSVSFPSWARVDTW----VKKGTNVSAEYDPTLAKIIVHG 420
Query: 501 ESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
+ R AI + L E + G TN+DY + + ++E K+ T LD
Sbjct: 421 KDRNDAIMKLNQALNETAVYG-CITNIDYLRSIASSKMFKEAKVATKVLD 469
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-05
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEG 742
D L +E + + + + G H++A +E MK M + + SG V + G
Sbjct: 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNG 1223
Query: 743 QAMQAGELIARL 754
++AG+L+A +
Sbjct: 1224 DMVEAGDLVAVI 1235
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 | Back alignment and structure |
|---|
Score = 363 bits (933), Expect = e-104
Identities = 140/517 (27%), Positives = 237/517 (45%), Gaps = 75/517 (14%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
K I +L+AN G A++ R+ E I VA+ + ED ++ H AD+
Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAA---------ELDISTVAIYSNEDK--SSLHRYKADES 50
Query: 106 VEV-PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPA 164
V +Y N++ I+++A+ VDA+ PG+G SE + + +GI F+GP
Sbjct: 51 YLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHL 110
Query: 165 TSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIA 224
+ GDK+ + A A++P +P G+ + + E A
Sbjct: 111 EHLDMFGDKVKARTTAIKADLPVIP--GT-------------------DGPIKSYELAKE 149
Query: 225 SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQS 280
+ G+P MIKA+ GGGGKG+R V + E+ F + + E G+ ++I +
Sbjct: 150 FAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209
Query: 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV 340
+H+EVQ++ D++GN+ L RDCSVQRRHQK++E P +++ AA +L + +
Sbjct: 210 KHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENI 269
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
YV A TVE+L + E++F+E+NPR+QVEH +TE + I++ Q+ V G L+
Sbjct: 270 KYVNAGTVEFL--VSGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFG-- 325
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
Q + G+ + R+T+EDP + F P +G
Sbjct: 326 -----------------------EEINMPQQ-KDITTLGYAIQCRITTEDPLNDFMPDTG 361
Query: 461 KVQELSFKSKPNV-----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515
+ V + G I + DS + S A MV L+
Sbjct: 362 TIIAYRSSGGFGVRLDAGDGF----QGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLR 417
Query: 516 EIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
E++IRG ++TN+ + I+++ + T +++
Sbjct: 418 EMRIRG-VKTNIPFLINVMKNKKFTSGDYTTKFIEET 453
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-103
Identities = 134/507 (26%), Positives = 230/507 (45%), Gaps = 71/507 (14%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
++ +L+AN G AV+ IR+ + E I VA+ + A H+++AD+
Sbjct: 2 VNKVLVANRGEIAVRIIRACK---------ELGIPTVAIYNEVES--TARHVKLADEAYM 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G + Y N Q I+ +A DA+ PG+G +E E GI F+GP +
Sbjct: 51 I-GTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK S + + A VP +P GS + + EEA A +
Sbjct: 110 ELMGDKARSKEVMKKAGVPVVP--GS-------------------DGVLKSLEEAKALAR 148
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP ++KA+ GGGG+GIR N++E+ ++Q E G + + K +H+
Sbjct: 149 EIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHI 208
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E Q+L D++GNV L RDCS+QRR+QK++E P + E + + AK + Y
Sbjct: 209 EYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYY 268
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A T+E++ + G YF+E+N R+QVEHPV+E + I++ Q+ + G PL
Sbjct: 269 NAGTMEFIAD-QEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPL------- 320
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q E + G+ + R+ +EDP F P++ ++
Sbjct: 321 ------------------------TIKQ-EDVKFNGYAIECRINAEDPKKNFAPSTRVIE 355
Query: 464 ELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
+ + G + + DS + + + A+ M L+ +I G +
Sbjct: 356 RYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITG-V 414
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLD 550
+T + I+++ D++ K T +L+
Sbjct: 415 KTTIPLLINIMKEKDFKAGKFTTKYLE 441
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449 | Back alignment and structure |
|---|
Score = 337 bits (867), Expect = e-103
Identities = 150/517 (29%), Positives = 248/517 (47%), Gaps = 79/517 (15%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ I+IAN G A++ +R+ + +T VA+ + D + +H+ +AD+ V
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKT---------VAVHSSADR--DLKHVLLADETVC 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ + +Y N+ I+ AE+T A+ PG+G SE + + G IF+GP A ++
Sbjct: 51 IGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK+ + + A VP +P S + DD+ ++ A +
Sbjct: 111 RLMGDKVSAIAAMKKAGVPCVPGSDG-----------PLGDDM---------DKNRAIAK 150
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP +IKAS GGGG+G+R V D E+ + E + +++ K RH+
Sbjct: 151 RIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHV 210
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q+L D GN L RDCS+QRRHQK++EE P E + + + + + Y
Sbjct: 211 EIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYR 270
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
GA T E+L+ E GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 271 GAGTFEFLF--ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPL------- 321
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q E +GH V R+ +EDP+ F P+ GK+
Sbjct: 322 ------------------------SIKQ-EEVHVRGHAVECRINAEDPNT-FLPSPGKIT 355
Query: 464 ELSFKSKPNV----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519
V Y +G + + DS G + +GE+R +AIA M L+E+ I
Sbjct: 356 RFHAPGGFGVRWESHIY----AGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELII 411
Query: 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556
G I+TNVD I +++ +++ + +L+ ++ ++
Sbjct: 412 DG-IKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQ 447
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446 | Back alignment and structure |
|---|
Score = 329 bits (847), Expect = e-100
Identities = 143/508 (28%), Positives = 236/508 (46%), Gaps = 80/508 (15%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G A++ +R+I+ E + + + D +A +++ AD + +
Sbjct: 9 ILIANRGEIALRALRTIK---------EMGKKAICVYSEADK--DALYLKYADASICIGK 57
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
++ +Y N+ I+ AE+ DA++PG+G SE + + I F+GP +M +
Sbjct: 58 ARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLM 117
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
DK + + Q A VP +P GS + E A + +G
Sbjct: 118 SDKSKAKQVMQRAGVPVIP--GS-------------------DGALAGAEAAKKLAKEIG 156
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP ++KA+ GGGG+G+R V N+ ++ + + E G +++ K RH+EVQ
Sbjct: 157 YPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQ 216
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
++ D +GNV + RDCS+QRRHQK+IEE P + +T +L + A + AK + Y GA
Sbjct: 217 VIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAG 276
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
T E+L + ++YF+E+N RLQVEH V+E ++ I++ + V G L
Sbjct: 277 TFEFLVD-KNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYAL---------- 325
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
ES + GH + R+T+ED F P+ GK+ +
Sbjct: 326 -----------------------PSQESIKLNGHSIECRITAEDSKT-FLPSPGKITKYI 361
Query: 467 FKSKPNV----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522
+ NV Y + + DS G + + E R AIA M + L E+ I G
Sbjct: 362 PPAGRNVRMESHCY----QDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISG- 416
Query: 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550
I+T D+ + ++ D+ N T +L
Sbjct: 417 IKTTKDFHLSMMENPDFINNNYDTNYLA 444
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-39
Identities = 38/97 (39%), Positives = 59/97 (60%)
Query: 674 IDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG 733
TC+ + ++DP+ L + + KL +Y V DG H++A + YAE+EVMKM M L G
Sbjct: 4 GSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERG 63
Query: 734 VLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYG 770
+++ G ++AG ++ARL+LDDPS V + P G
Sbjct: 64 RVKYIKRPGAVLEAGCVVARLELDDPSKVHPSGPSSG 100
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 8e-33
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQ 743
++DP+ L + + KL +Y V DG H++A + YAE+EVMKM M L G +++ G
Sbjct: 2 ENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGA 61
Query: 744 AMQAGELIARLDLDDPSAVRKAE 766
++AG ++ARL+LDD
Sbjct: 62 VLEAGCVVARLELDDLEHHHHHH 84
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 47/321 (14%), Positives = 90/321 (28%), Gaps = 55/321 (17%)
Query: 91 DMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP- 149
D A + +ADQ VP + ++ + + V A+ PEL
Sbjct: 35 DCSPLASALYMADQHYIVPKIDEVEY---IDHLLTLCQDEGVTALLTLID-----PELGL 86
Query: 150 -----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204
+ G+ + P + DK + +
Sbjct: 87 LAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAH-----------ARTYAT 135
Query: 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG 264
+ E + V P +K G +R+V +EV LF +
Sbjct: 136 M------------ASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK--- 180
Query: 265 EVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLE 324
+ + + ++ + L V D S+ + + + G +
Sbjct: 181 ---NTDLIVQELL-VGQELGVDAYVDLISGKV------TSIFIKEKLTMRAGETDKSRSV 230
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384
+ + + VG + G Y E+NPR +P +N P
Sbjct: 231 LRDDVFELVEHVLDGSGLVGPLDFDLF--DVAGTLYLSEINPRFGGGYPHAY-ECGVNFP 287
Query: 385 AAQVAVGMGIPLWQIPEIRRF 405
A M +P+I ++
Sbjct: 288 AQLYRNLMHEIN--VPQIGQY 306
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 7e-22
Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIAS 225
S + GDKI S L+A+ A V T+P G V EEA+
Sbjct: 2 SSGSSGDKIESKLLAKKAEVNTIP--GF-------------------DGVVKDAEEAVRI 40
Query: 226 CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSR 281
+ +GYP MIKAS GGGGKG+R +D+E R F+ E S + I K R
Sbjct: 41 AREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPR 100
Query: 282 HLEVQLL 288
H+
Sbjct: 101 HISGPSS 107
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Length = 522 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 2e-17
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 1814 LTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1872
+TG +LG EV S LGG + +GVVH V + E I+ + LSY+P +
Sbjct: 200 VTGPEITKVVLGEEV--SFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLPSNN 257
Query: 1873 GGALPIISPLDPPDRPVEYL----PENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVE 1925
P I DP DR + P ++ + R I I D F+E
Sbjct: 258 MEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREII-----------YKIVDNGEFLE 306
Query: 1926 TLEGWARTVVTGRARLGGIPVGIVA 1950
+ WA+ ++ G AR+ G VGIVA
Sbjct: 307 VHKHWAQNIIVGFARIAGNVVGIVA 331
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 1e-16
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 1825 GREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLD 1883
G +V + +LGG + MA +G +H DD K LS++P + ++P +
Sbjct: 213 GEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNN 270
Query: 1884 PPDRPVE---YLPENSCDP---RAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTG 1937
E +P + R I I D ++E G+A +VT
Sbjct: 271 DVSPNTELRDIVPIDGKKGYDVRDVI-----------AKIVDWGDYLEVKAGYATNLVTA 319
Query: 1938 RARLGGIPVGIVA 1950
AR+ G VGIVA
Sbjct: 320 FARVNGRSVGIVA 332
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Length = 531 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 1814 LTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1872
+TG + + +V S +LGG + V +D+E ++ + + + ++P +
Sbjct: 213 VTGPDVVKTVTNEQV--SAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFLPLNN 270
Query: 1873 GGALPIISPLDPPDRPVEYL----PENSCDP---RAAICGFLDNNGKWIGGIFDKDSFVE 1925
P+ D PDR L P+N P + I + D+ F E
Sbjct: 271 REKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELI-----------HKLADEGDFYE 319
Query: 1926 TLEGWARTVVTGRARLGGIPVGIVA 1950
E +A+ ++TG RL G VG+VA
Sbjct: 320 IQEEFAKNIITGFIRLEGRTVGVVA 344
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-16
Identities = 57/296 (19%), Positives = 99/296 (33%), Gaps = 38/296 (12%)
Query: 1834 QLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYL 1892
G I G +DL I I K++SY+P + + +P P P E L
Sbjct: 254 APGSVPIHYDETGFFREVYQNDLGVIDGIKKYISYLPAYNLEFFRVDTP-KAPQLPAEDL 312
Query: 1893 ----PENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIP 1945
P N D I +FD F E +G+ +VTG A++ G+
Sbjct: 313 YSIIPMNQKRPYDIYEVI-----------ARLFDNSEFSEYKKGYGPEMVTGLAKVNGLL 361
Query: 1946 VGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFI 2005
VG++A +M + G + K + + R+ +PL
Sbjct: 362 VGVIANVQGLLMNYPEYKQNSV--------GIGGKLYRQGLIKMNEFVTLCARDRIPLIW 413
Query: 2006 LANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR---GGAWVVVDSR 2062
L + G G +L G +++ ++ K P +R A V+
Sbjct: 414 LQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEIT-----IRKASAAAHYVLGGP 468
Query: 2063 -INSDHIEMYADRTAKGNVLEPEGMIEIKFRTK-ELLECMGRLDQKLIDLMAKLQE 2116
N+ ++ + V+ E + K + G Q +I M + +
Sbjct: 469 QGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQ 524
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 1640 SGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1697
G+ + IVA+D AG++ P + + +D A LPLIYL SG ++V
Sbjct: 104 DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKV 161
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 4e-16
Identities = 36/223 (16%), Positives = 71/223 (31%), Gaps = 27/223 (12%)
Query: 1816 GFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGG 1874
+ + ++ R G I G + + + + I K++ +P +
Sbjct: 235 YANEIADMVDRTG--KTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGMLPKYDPE 292
Query: 1875 ALPIISPLDPPDRPVE---YLPENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVETLE 1928
+ P P + +P N D I +FD E +
Sbjct: 293 FFRVDDPKAPAFPADDLYSMVPLNDKRAYDIYNVI-----------ARLFDNSELHEYKK 341
Query: 1929 GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1988
G+ +VTG A++ G+ VG+VA +M G + K
Sbjct: 342 GYGPEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAG-------SVGIGGKLYRQGLVK 394
Query: 1989 TAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIV 2031
+ + R+ LP+ + + G G +L G +++
Sbjct: 395 MNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLI 437
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 1640 SGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1697
+G+ ++VA+D AG++ P + L +D A +PL+Y+ SG + E+V
Sbjct: 103 NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKV 160
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Length = 527 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 4e-16
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 1814 LTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1872
+TG + + + G E+ S LGG + +G H +D + +S + LSY+P +
Sbjct: 206 ITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLPSNN 263
Query: 1873 GGALPIISPLDPPDRPVE---YLPENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVET 1926
P+ P + P + LP+N D R I + D F E
Sbjct: 264 AEEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVI-----------KRVVDHGEFFEV 312
Query: 1927 LEGWARTVVTGRARLGGIPVGIVA 1950
+A+ +V G AR+ G VGIVA
Sbjct: 313 QPYFAKNIVIGFARIQGKTVGIVA 336
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 2e-15
Identities = 52/433 (12%), Positives = 124/433 (28%), Gaps = 90/433 (20%)
Query: 123 IVEMAEMTRVDAVWPGWGHASEI-PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181
IV++AEM DA+ + + L G+ G + DK
Sbjct: 94 IVKVAEMFGADAITTNNELFIAPMAKACERL---GL--RGAGVQAAENARDKNKMRDAFN 148
Query: 182 AANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG 241
A V + ++ VT T E+ A+ + +G P ++K ++
Sbjct: 149 KAGVKS-----------IKNKRVT------------TLEDFRAALEEIGTPLILKPTYLA 185
Query: 242 GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQY--------- 292
G+ + + + F +V + + + + + +++
Sbjct: 186 SSIGVTLITDTETAEDEFNRVNDYLKSINV----PKAVTFEAPF--IAEEFLQGEYGDWY 239
Query: 293 --GNVAALHSRDCSVQRRHQKII------------EEGPITVAPL--ETVKKLEQAARRL 336
+ S + + I E IT + L E KK+ +AA++
Sbjct: 240 QTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKA 299
Query: 337 AKCVNYV-GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE---INLPAAQVAVGM 392
+ + A E M+ E +E R + I + +++ + V
Sbjct: 300 NEGLGLQNCATHTEIKL-MKNREPGLIESAARF-AGWNMIPNIKKVFGLDMAQLLLDVLC 357
Query: 393 GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPD 452
+P+ G+ D + P+ ++ D
Sbjct: 358 FGKDADLPD----------GLLDQEPYYVADCHLY---------PQHFKQNGQIPETAED 398
Query: 453 DGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEF---SDSQFGHVFAFGESRALAIAN 509
+ + K + ++ + G + + + G + +
Sbjct: 399 LVIEAIDIP--DGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFELKGSNSQDVAES 456
Query: 510 MVLGLKEIQIRGE 522
+ + ++ +
Sbjct: 457 IRQIQQHAKLTAK 469
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Length = 530 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 3e-15
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 1825 GREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLD 1883
G +V +LGG + +T+GV H D+ + + + + LSY+P + P
Sbjct: 216 GEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPEEA 273
Query: 1884 --PPDRPVEYL----PENSCDP---RAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTV 1934
L P+++ P + I + D F ET +A +
Sbjct: 274 DLAVTDEDAELDTIVPDSANQPYDMHSVI-----------EHVLDDAEFFETQPLFAPNI 322
Query: 1935 VTGRARLGGIPVGIVA 1950
+TG R+ G PVGIVA
Sbjct: 323 LTGFGRVEGRPVGIVA 338
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-15
Identities = 60/445 (13%), Positives = 125/445 (28%), Gaps = 104/445 (23%)
Query: 95 NAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLST 154
+ + +AD+ + + +N + + + +D + I L
Sbjct: 42 HKPCLNLADEISYM-------DISNPDEVEQKVKDLNLDGAATCCL-DTGIVSLARICDK 93
Query: 155 KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQA 214
+ + +G + GDK + NV T +V
Sbjct: 94 ENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNT-----------ARHFVVR--------- 131
Query: 215 CVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI--- 271
E + + + P ++KA+ G KGI ++E F +
Sbjct: 132 ---NENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVE 188
Query: 272 -FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITV-------APL 323
FI + Q + +V + H V +
Sbjct: 189 EFI-----EGYEFGAQAFVYK-NDVLFVMP--------HGDETYMSHTAVPVGHYVPLDV 234
Query: 324 --ETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE 380
+ ++K + ++ K + A V+ + E Y +EL R+ + E
Sbjct: 235 KDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYIIELTGRVG-----ANCLPE 287
Query: 381 INLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440
+ V + GI Y ++ P F +S K
Sbjct: 288 L------VEINYGIEY-----------------YKMIASMAISENPLVFWSQKSKENKAG 324
Query: 441 CVAVRVTSEDPDDGFKPTSGKVQEL--SFKSKPNVW-AYFSVKSGGGIHEFSDSQ--FGH 495
+ + +E G ++E+ S ++ F + I +F +S G
Sbjct: 325 LARMIIETEKS--------GILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQ 376
Query: 496 VFAFGESRALAIANMVLGLKEIQIR 520
+ E+ + + + I I
Sbjct: 377 IIVKEETLDKCKDKLDVIINNINII 401
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Length = 548 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 1e-14
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 1825 GREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLD 1883
G EV + +LGG MA +G H S + + + + LSY+PP+ P
Sbjct: 227 GEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPRYQAAA 284
Query: 1884 PPDRPVEYLPENSCDPRAAICGFLDNNGK------WIGGIFDKDSFVETLEGWARTVVTG 1937
P E L + + I D+ + I + D D F+E G+A+ +V G
Sbjct: 285 PTGPIEENLTDEDLELDTLIP---DSPNQPYDMHEVITRLLD-DEFLEIQAGYAQNIVVG 340
Query: 1938 RARLGGIPVGIVA 1950
R+ G PVGIVA
Sbjct: 341 FGRIDGRPVGIVA 353
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 1e-13
Identities = 97/679 (14%), Positives = 204/679 (30%), Gaps = 224/679 (32%)
Query: 689 KLVAETPCK----LLRYLVSDG--SHIDADTPYAEVEVMKMCMPLLS-PASGVLQFKMAE 741
V CK + + ++S HI + A +++ LLS V +F + E
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEE 85
Query: 742 GQAMQAGELIARL--DLDDPSAVRKA-----EPFYGSFPILGPPTAISGKVH---QRCAA 791
+ L++ + + PS + + + Y + + + ++
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 792 SLNAAR------M------ILAGYEHNIEEVVQ---------------NLLNCLDSPELP 824
L A+ + +A +V NL NC +SPE
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVAL------DVCLSYKVQCKMDFKIFWLNLKNC-NSPETV 198
Query: 825 LLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNV--------DFPAKLL------ 870
L Q+ L ++ + + + RI S Q + LL
Sbjct: 199 LEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 871 -RGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEEL- 928
A LSC ++ L+ + R + + ++S++
Sbjct: 255 NAKAWNAFNLSC---------KI------LLTT----RFKQVTDFLSAATTTHISLDHHS 295
Query: 929 --FSDQIQADVIERLRLQYKKDLLKVVDIV---LSHQGVKRKNKLILRLMEQLVYPNPAA 983
+ E L LLK +D L + V N L ++ +
Sbjct: 296 MTLTPD------EVKSL-----LLKYLDCRPQDLPRE-VLTTNPRRLSII-------AES 336
Query: 984 YRDKLIRFSALNHTNYSEL--ALKASQLLEQTKLSELRSSIARSLSELEMFTED------ 1035
RD L + H N +L +++S L + +E R + L +F
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYR----KMFDRLSVFPPSAHIPTI 390
Query: 1036 --------------GESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDH--TLQR 1079
++ + S ++++ ++ +++ + L ++ L R
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIPSIYLELKVKLENEYALHR 447
Query: 1080 RVVETY-VRRLYQP-YLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEK 1137
+V+ Y + + + L+ + ++ + H++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFY--------SHIGHHLKNIE-------------- 485
Query: 1138 HSERKWGAMVIIKSLQSFPDI------LSAALRETAHSRNDSISKGS--AQTASYGNMMH 1189
H ER + F + L +R + + N S S + Q Y +
Sbjct: 486 HPER----------MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--Y 533
Query: 1190 IALVGMNNQMSLLQDSGDEDQAQER-INKLAKILKEQEVGSGLHSAGVGVISCIIQRDEG 1248
I D D ER +N + L ++ L + + +++
Sbjct: 534 IC---------------DNDPKYERLVNAILDFL--PKIEENLICSK---YTDLLR---- 569
Query: 1249 RAPMRHSFHWSPEKFYYEE 1267
A M + ++ +EE
Sbjct: 570 IALM------AEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 6e-06
Identities = 99/743 (13%), Positives = 202/743 (27%), Gaps = 250/743 (33%)
Query: 282 HLEVQLLCDQYGNVAAL-HSRDCSVQRRHQKIIEEGPITVAPLETVKKL------EQAAR 334
H++ + QY L D V K +++ P ++ E + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 335 RLAKCVNYVGAATVE-YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393
RL + V+ ++ + Y FL ++ E P+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFL-----------MSPIKTEQRQPSM------- 107
Query: 394 IPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDD 453
+ R Y + +Y+ F K + V+ P
Sbjct: 108 --------MTRMYIEQRDRLYND-------NQVF---------AKYN-----VSRLQPYL 138
Query: 454 GFKPTSGKVQELSFKSKPNVWAYFSVKSG-GGIHEFSDSQFGHVFAFGESRALAIANMVL 512
+ + EL + NV G G G++ +A V
Sbjct: 139 KLRQ---ALLEL--RPAKNVLID-----GVLG--------------SGKT---WVALDVC 171
Query: 513 GLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGA 572
++Q + + KI WL+ + P L ++
Sbjct: 172 LSYKVQCK-------------------MDFKIF--WLNLK-----NCNSPETVLEMLQKL 205
Query: 573 LYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYR-----IDMVRRGPG 627
LY+ + ++ + I + +++ ++ Y + V+
Sbjct: 206 LYQ-------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---- 254
Query: 628 SYTLRMNESEIEA-EIH-----TLRDGGLLMQLDGN--SHVV-------YAEEEAAGTRL 672
N A + T R + L +H+ +E L
Sbjct: 255 ------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--L 306
Query: 673 LIDGRTCLLQNDHD-PSKLVAETP--CKLLRYLVSDG-SHIDADTPYAEV------EVMK 722
L+ L D P +++ P ++ + DG + D + V +++
Sbjct: 307 LLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIE 360
Query: 723 MCMPLLSPA-------------------SGVLQ---FKMAEGQAMQ-AGELIARLDLDDP 759
+ +L PA + +L F + + M +L ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 760 SAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLD 819
++ + S P + + KV +L+ R I+ Y N+ D
Sbjct: 419 ---KQPKESTISIPSI----YLELKVKLENEYALH--RSIVDHY---------NIPKTFD 460
Query: 820 SPELPLLQWQECMAVLSTRLPKD----------LKN-ELESKCKEFERISSSQNVDF-PA 867
S +L D LKN E + F + + F
Sbjct: 461 SDDLIPPYL-------------DQYFYSHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQ 505
Query: 868 KLLR-GVLEAHLLSCAD-------------KERGSQERLIEPLMSLVKSYEGG--RESHA 911
K+ S + ERL+ ++ + E +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 912 RVIVQSLFEEYLSVEELFSDQIQ 934
++ +L E ++ E Q+Q
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 7e-06
Identities = 83/631 (13%), Positives = 169/631 (26%), Gaps = 161/631 (25%)
Query: 1266 EEEPLLRHLEPPLSIYLELDKLKGYDNIQY------TLSRDRQW---HLYTVVDKPLPIR 1316
E + ++ + L L + ++ + T +P +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 1317 RMFLRTLVRQPTSNDGFMSYPVS--DMGTNRAQWTMSFTS-RGVL--------RSLMAAM 1365
RM++ R N F Y VS Q + + VL ++ +A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 1366 --------EELELNVH--N-ASVKSDHAQMY----LCILREQKINDLVPYPKRVDVDAGQ 1410
+++ + N + S + L + + + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 1411 EETAIEALLEELAREIHATVGVRMHK--LGVCE--WEVKLWMAYSGQANGAWRVVVTNVT 1466
+ + LL+ + ++ L V K W A++ ++++T T
Sbjct: 230 IQAELRRLLKS-----------KPYENCLLVLLNVQNAKAWNAFNLSC----KILLT--T 272
Query: 1467 GHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTY 1526
++++ D H + ++ +L + K LL + +
Sbjct: 273 R-------FKQVTDFLSAATTTH----------ISLDHHSMTLTPDEVKSLLLKYLDCR- 314
Query: 1527 CYDFPLVSTLASTCCNIRSFFFSSFNLSISDC-------KSCSCEKCYLQAFETALEQSW 1579
L S SI D K +C+K T +E S
Sbjct: 315 ------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTIIESSL 363
Query: 1580 ASQFPN-MRP--KDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC-MEMFT 1635
P R ++ F ++L + W +
Sbjct: 364 NVLEPAEYRKMFDRLSV-------FPPS--AHIPTILLS-----------LIWFDVIKSD 403
Query: 1636 PEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAE 1695
++V + P+E + + K+ L A I
Sbjct: 404 VM-------VVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALH-RSIVDHY 453
Query: 1696 EVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMK-LESGET---------- 1744
+ F+ +D+L P Y Y S I H +K +E E
Sbjct: 454 NIPKTFD---SDDLIPPYLDQYFY-----------SHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 1745 -RWVVDSIVGKEDGLGVENLTGSGAIAGAYS--RAYKETFTL--TYVTGRTVGIGAYLAR 1799
R++ I + D SG+I + YK I +L +
Sbjct: 500 FRFLEQKI--RHDST---AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 1800 LGMRCIQRLDQPIILTGFSALNKLLGREVYS 1830
+ I ++ A ++ + E +
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 7e-05
Identities = 75/650 (11%), Positives = 171/650 (26%), Gaps = 241/650 (37%)
Query: 936 DVIERLRLQYKKDL--------LKVV-------DIVLSHQGVKRKNKLIL---------- 970
D++ + + K + I++S V +L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 971 -RLMEQLVYPN--------------PAA-------YRDKLIR----FSALN---HTNYSE 1001
+ +E+++ N P+ RD+L F+ N Y +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 1002 LALKASQLLEQTKL----------SELRSSIARSLSELEMFTEDGE----SMDTPKRKSA 1047
L +L + + + + S D + ++ K ++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNL---KNCNS 194
Query: 1048 IDERMEDLVSAPLAVEDALVGLFDHSDHTLQR-RVVETYVRRL--YQPY----LVKGSVR 1100
+ +E L ++ DHS + R ++ +RRL +PY LV +V+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 1101 MQWH------RCG-LIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVIIKSLQ 1153
C L+ + R D + + +
Sbjct: 255 NAKAWNAFNLSCKILLTT---------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 1154 SFPDILS---AALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGD--E 1208
L L + N ++++ ++D +
Sbjct: 306 LLLKYLDCRPQDLPREVLT---------------TNPRRLSIIA-----ESIRDGLATWD 345
Query: 1209 DQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFH----------- 1257
+ +KL I++ S + + A R F
Sbjct: 346 NWKHVNCDKLTTIIE----------------SSLNVLEP--AEYRKMFDRLSVFPPSAHI 387
Query: 1258 --------WSPEKFYYEEEPLLRHL-----------EPPLSIY-LELDKLKGYDNI---- 1293
W + + ++ L E +SI + L+ +N
Sbjct: 388 PTILLSLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 1294 -----QYTLSRDRQW------------------HLYTV--VDKPLPIRRMFLRTLVRQPT 1328
Y + + HL + ++ R +FL
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-------- 498
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+ F+ + T W + G + + + +L + + + +
Sbjct: 499 -DFRFLEQKIRHDSTA---W----NASGSILNTL-----QQLKFYKPYICDNDPK----- 540
Query: 1389 LREQKINDLVPYPKRVDVD------------AGQEETAIEALLEELAREI 1426
E+ +N ++ + +++ + A E EA+ EE +++
Sbjct: 541 -YERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-04
Identities = 84/625 (13%), Positives = 178/625 (28%), Gaps = 161/625 (25%)
Query: 1662 EDAFFLAVTDLACAKKLPLIYLAANSGAR----IGVAEEVKACFEIGWTDELNPDRG--- 1714
EDAF V + C K + + + S I + V + WT +
Sbjct: 26 EDAF---VDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 1715 FNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYS 1774
F L +Y + S I E + S TR ++ + L + Y+
Sbjct: 82 FVEEVLRI-NYKFLMSP-IKTEQRQPSMMTRMYIEQ---------RDRLYNDNQVFAKYN 130
Query: 1775 RAYKETFT-LTYVTGRTVGIGAYLARLGMRCIQRLDQP---IILTGFSALNK-LLGREVY 1829
+ + + L + + L +P +++ G K + +V
Sbjct: 131 VSRLQPYLKLR------------------QALLEL-RPAKNVLIDGVLGSGKTWVALDVC 171
Query: 1830 SSHMQLGGPKIMATNGVVHLTVS--DDLEGISAILKWLSY--VPPHIGGALPIISPLDPP 1885
S+ + + L + + E + +L+ L Y P + +
Sbjct: 172 LSY----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 1886 ----DRPVEYLPENSCDPRAAICGFLDN-NGKWIGGIFDKDSFVETLEGWARTVVTGRAR 1940
L + L N F+ + ++T R +
Sbjct: 228 HSIQAELRRLLKSKP-YENCLL--VLLNVQNAKAWNAFNLSC---------KILLTTRFK 275
Query: 1941 LGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKT--AQALMDFNR 1998
QV +H + + K+ + L D
Sbjct: 276 -----------------QVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYL-DCRP 315
Query: 1999 EEL--------PLFI----------LANWRGFSGGQRDLFEGILQAGSTIVENL------ 2034
++L P + LA W + D I+++ + L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLEPAEYR 372
Query: 2035 RTYKQ-PVF---VYIPM--MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE---PEG 2085
+ + + VF +IP ++ + W V + + ++ K +++E E
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLI----WFDVIKSD----VMVVVNKLHKYSLVEKQPKES 424
Query: 2086 MIEI---KFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES----------LQQQ 2132
I I K LE L + ++D + ++ + L+
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 2133 IKAREKQLLPT-YTQVATKFAE---LHDTSLRMAAKGVIKEVVDWDKSRSFFCR---RLR 2185
L + +F E HD++ A+ ++ + + + C +
Sbjct: 485 EHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 2186 RRVAESSLVKTLTAAAGDYLTHKSA 2210
R V ++++ L + + K
Sbjct: 543 RLV--NAILDFLPKIEENLICSKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-04
Identities = 62/518 (11%), Positives = 137/518 (26%), Gaps = 177/518 (34%)
Query: 46 KPIHSILIANNGMA-------AVKFIRSIRT---------WAYETFGT-EKAILLVAMAT 88
+P ++LI +G+ A+ S + W ++ M
Sbjct: 148 RPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQ 203
Query: 89 PEDMRINAEHIRIADQFVEVPGGTN-----------NNNYANVQLIVEMAEMTRVDAVWP 137
+I+ +D + + + Y N L+V + V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLV-------LLNVQ- 254
Query: 138 GWGHASEIPELPD----TLST---KGII-FLGPPATSMAALGDKIGS-------SLIAQA 182
++ + L T K + FL T+ +L + SL+ +
Sbjct: 255 ----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 183 ANVPTLPWSGSHVKIPPESCLV----------TIPDDV-----YRQACVYTTEEAIASCQ 227
+ +P E +I D + ++ I S
Sbjct: 311 LDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ-------VQGEVP----------GSP 270
V E R +F + +P
Sbjct: 364 --------------------NVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIK 401
Query: 271 IFIMKVASQSRHLEVQLLCDQYGN--VAALHSRDCSVQRR-------HQKIIEEGPITVA 321
+M V ++ L L ++ ++ S ++ + H+ I++
Sbjct: 402 SDVMVVVNK---LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH------ 452
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYL-YSMETGEYY---------FLELNPRLQVE 371
K + Y ++ + ++ E+ FL+
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYF----YSHIGHHLKNIEHPERMTLFRMVFLDFR------ 501
Query: 372 HPVTEWIAE--INLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
++ + + A A G + Q + + Y ++ Y+ ++ DF
Sbjct: 502 -----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-----LVNAILDF 551
Query: 430 -DQAEST--RPKGHCVAVRVTSEDPDDG-FKPTSGKVQ 463
+ E K + +R+ D+ F+ +VQ
Sbjct: 552 LPKIEENLICSK-YTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 9e-10
Identities = 70/363 (19%), Positives = 114/363 (31%), Gaps = 88/363 (24%)
Query: 1835 LGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYL- 1892
LGG + +GV DD ++ + ++ + G L +P P P E L
Sbjct: 252 LGGADVHCKVSGVADHYAEDDDHALAIARRCVANLNWRKQGQLQCRAP-RAPLYPAEELY 310
Query: 1893 ---PENS---CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPV 1946
P +S D R I + D F E + T+V G A L G P+
Sbjct: 311 GVIPADSKQPYDVREVI-----------ARLVDGSEFDEFKALFGTTLVCGFAHLHGYPI 359
Query: 1947 GIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFIL 2006
I+A ++ F ++A K A + + +PL L
Sbjct: 360 AILA--NNGIL------------------------FAEAAQKGAHFIELACQRGIPLLFL 393
Query: 2007 ANWRGFSGGQRDLFEGILQAGS---TIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRI 2063
N GF GQ+ GI + G+ T V R K V + A G D R
Sbjct: 394 QNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRF 453
Query: 2064 NSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTL 2123
++ A+ V+ E + + K + + A +
Sbjct: 454 ------LWMWPNARIGVMGGEQAAGVLAQVKR----------------EQAERAGQQLGV 491
Query: 2124 AMVESLQQQIKAR-EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCR 2182
++ I + E Q P Y+ +A+ V+D ++R
Sbjct: 492 EEEAKIKAPILEQYEHQGHPYYS----------------SARLWDDGVIDPAQTREVLAL 535
Query: 2183 RLR 2185
L
Sbjct: 536 ALS 538
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 1640 SGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1697
G +IV ND T K G++ P L +A +LP IYL + GA + +EV
Sbjct: 119 EGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEV 176
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 6e-08
Identities = 37/321 (11%), Positives = 84/321 (26%), Gaps = 64/321 (19%)
Query: 90 EDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP-GWGHASEIPEL 148
+ + E ++ +++ +E + DA + L
Sbjct: 33 DGFKNYYEITGFVRPEFSCLFTLPVDSMDSMEKYLE-----KSDAFLIIAPEDDFLLYTL 87
Query: 149 PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208
LG + ++A DK + V++P T
Sbjct: 88 TKKAEKYCE-NLGSSSRAIAVTSDKWELYKKLRG-----------EVQVPQ-----TSLR 130
Query: 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268
+ +IK G+GI + Q + G
Sbjct: 131 PL-------------------DCKFIIKPRTACAGEGIGFSDEVPDGHI----AQEFIEG 167
Query: 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKK 328
+L V L + +++ + + R ++ P ++ +
Sbjct: 168 ------------INLSVSLAVGEDVKCLSVNEQIINNFRYAGAVV---PARISDEVKREV 212
Query: 329 LEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQV 388
+E+A R + G V+ +Y + + Y +E+N RL ++
Sbjct: 213 VEEAVRAVECVEGLNGYVGVDIVY---SDQPYVIEINARLTTPVVAFSRAYGASVADLLA 269
Query: 389 AVGMGIPLWQIPEIRRFYGME 409
+ Q+ +
Sbjct: 270 GGEVKHVRRQMVRKSKSAEKP 290
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 8e-08
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
V E A+ + +GYP +++AS+ GG+ + V+++ ++R F+ +P+ +
Sbjct: 695 VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 754
Query: 276 VASQSRHLEVQLLCDQYG-NV-----------AALHSRD--CSVQRRHQKIIEEGPITVA 321
+ ++V +CD G V A +HS D CS+ T++
Sbjct: 755 FLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGDSACSLP----------AYTLS 802
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
E + Q ++LA + G V+ ++++ E Y +E+NPR
Sbjct: 803 Q-EIQDVMRQQVQKLAFELQVRGLMNVQ--FAVKNNEVYLIEVNPR 845
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEG 742
+A + + V G + A + MKM + SP G V + EG
Sbjct: 11 QETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREG 70
Query: 743 QAMQAGELIARLDLDD 758
+ + ++
Sbjct: 71 AQANRHTPLVEFEEEE 86
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQA 744
++ A P K++ V G+ + P + MKM + SP G V + + +
Sbjct: 648 VKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT 707
Query: 745 MQAGELIARLD 755
++ +LI ++
Sbjct: 708 LEGDDLILEIE 718
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 44/282 (15%), Positives = 89/282 (31%), Gaps = 58/282 (20%)
Query: 100 RIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDT-----LST 154
++A + N + + + E + DA+ P EI E +
Sbjct: 58 QVAHRSYVG-------NMMDKDFLWSVVEREKPDAIIP------EI-EAINLDALFEFEK 103
Query: 155 KGIIFLGPPATSMAALGDKIGS-SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQ 213
G + P A + + + + A VPT +
Sbjct: 104 DGYFVV-PNARATWIAMHRERLRETLVKEAKVPTSRY----------------------- 139
Query: 214 ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQ--GEVPGSPI 271
T +E +C+ +GYP KA GKG V +++ +++ + I
Sbjct: 140 MYATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKI 199
Query: 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK--IIEEGPITVAPLETVKKL 329
+ + + + N + + +Q + P E +K
Sbjct: 200 IVEEHIDFDVEVTELAVRHFDENGEIVTT-FPKPVGHYQIDGDYHA---SWQPAEISEKA 255
Query: 330 EQAARRLAKCV----NYVGAATVEYLYSMETGEYYFLELNPR 367
E+ R+AK + +G VE ++ + + E++PR
Sbjct: 256 EREVYRIAKRITDVLGGLGIFGVEMF--VKGDKVWANEVSPR 295
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAG 748
+ + L + V G I+ A +E MKM +P+++ SG V + K EG + G
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEG 61
Query: 749 ELIARLDLDD 758
+++ L
Sbjct: 62 DVLLELSNST 71
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 72/274 (26%)
Query: 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP-DTLST--KGIIFLGPPATSMAALGD 172
N + + + E+ + + P EI + D L + + + P A + +
Sbjct: 59 NMLDGDALRRVVELEKPHYIVP------EIEAIATDMLIQLEEEGLNVVPCARATKLTMN 112
Query: 173 KIGS-SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
+ G L A+ +PT + + + +GY
Sbjct: 113 REGIRRLAAEELQLPTSTY-----------------------RFADSESLFREAVADIGY 149
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSP--------------IFIMKVA 277
P ++K GKG + + +++ +K Q I ++ V
Sbjct: 150 PCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTV- 208
Query: 278 SQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLA 337
++ C G+ Q E + P + + A+ +A
Sbjct: 209 ---SAVDGVHFCAPVGH----------RQEDG--DYRE---SWQPQQMSPLALERAQEIA 250
Query: 338 KCV----NYVGAATVEYLYSMETGEYYFLELNPR 367
+ V G VE E F E++PR
Sbjct: 251 RKVVLALGGYGLFGVELFVC--GDEVIFSEVSPR 282
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAM 745
+ + A P K+LR LV G + +E MKM + SP G V + + EG+A+
Sbjct: 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAV 64
Query: 746 QAGELIARL 754
G+ + L
Sbjct: 65 DTGQPLIEL 73
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 26/185 (14%)
Query: 184 NVP--TLPWSGSHVKIPPESCLVTIPDDVYRQ--------------ACVYTTEEAIASCQ 227
NVP + + P + + + D R+ V E+ +
Sbjct: 69 NVPVEAARRLEGRLPLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLK 128
Query: 228 VVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286
VG PA++K GG GKG V ++E K + G + + R + +
Sbjct: 129 RVGLPALLKTRRGGYDGKGQALVRTEEEALEALK----ALGGRGLILEGFVPFDREVSLL 184
Query: 287 LLCDQYGNVAALHSRDCS--VQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG 344
+ + G VA + P A KK E A R + ++YVG
Sbjct: 185 AVRGRTGEVAFY---PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVG 241
Query: 345 AATVE 349
+E
Sbjct: 242 VLALE 246
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAGELIA 752
T +++R+ V +G ++ D EV K+ + + SP G +++ EGQ + G +
Sbjct: 14 TEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLL 73
Query: 753 RLD 755
++D
Sbjct: 74 QID 76
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQA 744
++ A + + LV +G + A +E MKM + +P G V + + E A
Sbjct: 7 GEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA 66
Query: 745 MQAGELIARL 754
+Q G+ + ++
Sbjct: 67 VQGGQGLIKI 76
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQA 744
S L + P ++ V G + +E MKM + + +G V G
Sbjct: 24 TSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT 83
Query: 745 MQAGELIARLD 755
+ G+L+ L+
Sbjct: 84 VGEGDLLVELE 94
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 698 LLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARLDL 756
++++ V G ++ D EV+ K + + SP G + + + EG G+ + LD
Sbjct: 19 IVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA 78
Query: 757 DDPSAVRKAEP 767
+
Sbjct: 79 PGYENMTFKGQ 89
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2304 | |||
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 100.0 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 100.0 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 100.0 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 100.0 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 100.0 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 100.0 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 100.0 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 100.0 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 100.0 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 100.0 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 100.0 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 100.0 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 100.0 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 100.0 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 100.0 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 100.0 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 100.0 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 100.0 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 100.0 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 100.0 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 100.0 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 100.0 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 100.0 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 100.0 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 100.0 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 100.0 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 100.0 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 100.0 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 100.0 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 100.0 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 100.0 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 100.0 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 100.0 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 100.0 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 100.0 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 100.0 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 100.0 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 100.0 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 100.0 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 100.0 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 100.0 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 99.97 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 99.96 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 99.95 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 99.95 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 99.94 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 99.94 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.94 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.94 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 99.94 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 99.94 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.94 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 99.94 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 99.93 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 99.93 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 99.93 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 99.92 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 99.92 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 99.92 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.92 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.9 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 99.9 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 99.88 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.85 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 99.84 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.8 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.74 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.72 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 99.66 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.62 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 99.62 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 99.61 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 99.59 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 99.58 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 99.56 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 99.56 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 99.55 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 99.55 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.54 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 99.53 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 99.5 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.49 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.48 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 99.47 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.45 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.43 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 99.41 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.4 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 99.36 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 99.28 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 99.26 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 99.25 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.25 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 99.25 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 99.23 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 99.22 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 99.2 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 99.19 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 99.15 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 99.15 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 99.15 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 99.14 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.13 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.13 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 99.13 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.12 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 99.09 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.08 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 99.08 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 99.05 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 99.05 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 99.04 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 99.02 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 98.86 | |
| 1zko_A | 136 | Glycine cleavage system H protein; TM0212, structu | 98.79 | |
| 3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase comp | 98.7 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 98.67 | |
| 1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitoch | 98.6 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 98.54 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 98.53 | |
| 1hpc_A | 131 | H protein of the glycine cleavage system; transit | 98.39 | |
| 3a7l_A | 128 | H-protein, glycine cleavage system H protein; lipo | 98.24 | |
| 1onl_A | 128 | Glycine cleavage system H protein; hybrid barrel-s | 98.24 | |
| 2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, | 97.35 | |
| 3ne5_B | 413 | Cation efflux system protein CUSB; transmembrane h | 97.27 | |
| 3lnn_A | 359 | Membrane fusion protein (MFP) heavy metal cation Z | 97.25 | |
| 3klr_A | 125 | Glycine cleavage system H protein; antiparallel be | 97.24 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 97.22 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 97.2 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 97.19 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 97.14 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 96.98 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 96.96 | |
| 3mwd_A | 425 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 96.91 | |
| 1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, | 96.9 | |
| 3mxu_A | 143 | Glycine cleavage system H protein; seattle structu | 96.87 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 96.87 | |
| 3tzu_A | 137 | GCVH, glycine cleavage system H protein 1; ssgcid, | 96.85 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 96.78 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 96.66 | |
| 4dk0_A | 369 | Putative MACA; alpha-hairpin, lipoyl, beta-barrel, | 96.56 | |
| 3cdx_A | 354 | Succinylglutamatedesuccinylase/aspartoacylase; str | 96.56 | |
| 2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase | 96.54 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 96.45 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 96.4 | |
| 1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransf | 96.27 | |
| 3hgb_A | 155 | Glycine cleavage system H protein; ssgcid, niaid, | 96.02 | |
| 3na6_A | 331 | Succinylglutamate desuccinylase/aspartoacylase; st | 96.0 | |
| 1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phospho | 95.95 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 95.95 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 95.56 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 95.21 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 95.14 | |
| 3fmc_A | 368 | Putative succinylglutamate desuccinylase / aspart; | 94.89 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 94.16 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 94.14 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 93.04 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 92.62 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 92.35 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 92.17 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 91.71 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 91.65 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 91.59 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 91.33 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 91.17 | |
| 2qj8_A | 332 | MLR6093 protein; structural genomics, joint center | 91.12 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 91.02 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 90.91 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 90.83 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 90.41 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 90.38 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 90.37 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 90.33 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 90.16 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 90.06 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 89.83 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 89.64 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 89.64 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 89.54 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 89.47 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 89.33 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 89.2 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 89.18 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 89.05 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 88.93 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 88.85 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 88.83 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 88.81 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 88.74 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 88.7 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 88.64 | |
| 2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase | 88.62 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 88.59 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 88.43 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 88.36 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 88.26 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 88.19 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 87.94 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 87.93 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 87.84 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 87.83 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 87.74 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 87.68 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 87.54 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 87.51 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 87.49 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 87.46 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 87.36 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 87.26 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 87.17 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 87.11 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 87.08 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 87.03 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 86.84 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 86.84 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 86.71 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 86.71 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 86.7 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 86.68 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 86.68 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 86.55 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 86.51 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 86.43 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 86.35 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 86.21 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 86.14 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 86.06 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 85.97 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 85.88 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 85.83 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 85.66 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 85.64 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 85.51 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 85.38 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 85.23 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 84.91 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 84.83 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 84.79 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 84.66 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 84.59 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 84.44 | |
| 1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransf | 84.32 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 84.17 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 83.51 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 83.5 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 83.42 | |
| 2xha_A | 193 | NUSG, transcription antitermination protein NUSG; | 83.21 | |
| 1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phospho | 83.2 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 83.13 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 82.94 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 82.87 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 82.85 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 82.81 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 82.69 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 82.59 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 81.93 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 81.72 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 81.67 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 81.59 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 81.38 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 81.32 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 81.28 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 81.27 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 81.03 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 80.94 | |
| 2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, | 80.83 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 80.79 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 80.73 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 80.69 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 80.59 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 80.4 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 80.14 |
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-166 Score=1588.35 Aligned_cols=749 Identities=48% Similarity=0.807 Sum_probs=660.4
Q ss_pred cccCCccccccccCchhhhhhhhhcccCCccccccCCCCCCCccccCCCcccchhhhhcccCccCCCCcchhHHHHHHHH
Q 000086 1495 GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFETA 1574 (2304)
Q Consensus 1495 g~~~~~~~~~pY~~~~~~~~kr~~a~~~~t~y~yd~p~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1574 (2304)
|||||+|+++|||+|+++|+||++||++||||+||||+ ||+++
T Consensus 1 g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~-------------------------------------l~~~~ 43 (758)
T 3k8x_A 1 GSMHLRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPE-------------------------------------LFRQA 43 (758)
T ss_dssp ----CCCCCCSSCCHHHHSHHHHHHHHTTSCCGGGHHH-------------------------------------HHHHH
T ss_pred CCcCCcccCCCCCCcchhhHHHHHHHHcCCeeecchHH-------------------------------------HHHHH
Confidence 79999999999999999999999999999999999999 99999
Q ss_pred HHHhHhhhCCCCCCCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEecccc
Q 000086 1575 LEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK 1654 (2304)
Q Consensus 1575 ~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~ 1654 (2304)
+.++|++.. .....|++++++.||+||+ +| +|.+++|+||.|++|||+|.++++||||++|++|+|++||+||+
T Consensus 44 ~~~~w~~~~-~~~~~~~~~~~~~el~l~~-~~----~L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~ 117 (758)
T 3k8x_A 44 SSSQWKNFS-ADVKLTDDFFISNELIEDE-NG----ELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK 117 (758)
T ss_dssp HHHHHHHHC-TTCCCCGGGEEEEEEEECT-TS----CEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG
T ss_pred HHHHHHhcc-ccccCCCccceEEEEEEcC-CC----CeehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccc
Confidence 999997764 3345778999999999998 77 89999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhc-----
Q 000086 1655 AGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG----- 1729 (2304)
Q Consensus 1655 ~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~----- 1729 (2304)
+||||+.+++|+.|++|+|+++|+|+|+|++|||||||++++++++|+|+|+|+.+|.+||+|||+++++|++++
T Consensus 118 gGS~G~~~~eKi~Ra~e~A~~~~lPvI~l~dSGGARmqe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~ 197 (758)
T 3k8x_A 118 IGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKE 197 (758)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCG
T ss_pred cccCcHHHHHHHHHHHHHHHHcCCCEEEEecCCCcCccccchhccccccccccccchhcccceeccCHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC
Q 000086 1730 SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD 1809 (2304)
Q Consensus 1730 ~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~ 1809 (2304)
++++.+.++ ++||.||+|++|+|+++|+||+|+++||+|||+||+||++||||++|||||+|||||+++|||++||+++
T Consensus 198 ~~vi~~~~~-~~ge~r~~I~~I~G~~~~~gv~~l~~sG~iag~~s~a~~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~ 276 (758)
T 3k8x_A 198 NSVLTERTV-INGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG 276 (758)
T ss_dssp GGEEEEEEE-ETTEEEEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHTTSCEEEEECSCEETHHHHHHHHTCEEEEETT
T ss_pred ccceeeeec-cCCceeeeEeeeeccccchhhhhccccchhhhhhhhhhcCCCEEEEEccCCchHHHHHHhhCCEEEEECC
Confidence 678888887 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEecChHHHHHhhcccccccccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCC
Q 000086 1810 QPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPV 1889 (2304)
Q Consensus 1810 ~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~ 1889 (2304)
++||||||++|++++|+++|+|+++|||+++|.+||++|++++||.++++.||+||||+|.++.+++|..++.||++|.+
T Consensus 277 s~ifltGP~vIk~~tGeeV~~s~eeLGGA~vh~~sGvad~va~dd~eal~~ir~lLsyLP~~~~~~~p~~~~~dp~dr~~ 356 (758)
T 3k8x_A 277 QPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPV 356 (758)
T ss_dssp CCEESSCHHHHHHHHTSCCCSCTHHHHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSCSCC
T ss_pred ceEEEeCHHHHHHHhCCccccCchhcchhhHHHhcCCeeEEecCHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC--CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCC
Q 000086 1890 EYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQL 1967 (2304)
Q Consensus 1890 ~~~P~--~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p 1967 (2304)
+++|. ++||+|++|+++.|+.+ |++||||+++|+|++++||+++|||+|||+|+|||||||+++++++.+||||+||
T Consensus 357 ~~vP~~~~pYD~R~vIa~~~d~~~-~~~givD~~sF~E~~~~~a~~iVtG~ARl~G~pVGVIAn~~~~~~~~~padP~~p 435 (758)
T 3k8x_A 357 DFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANP 435 (758)
T ss_dssp CCCCCSSSCCCHHHHHHCEEETTE-EECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTST
T ss_pred ccCCCCCCCCCHHHHHhccccccc-ccceeecCCceEEEcCCccccEEEEEEEECCEEEEEEEEccccccccCcccccCc
Confidence 99998 99999999999988877 9999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1968 DSHERVVPQAGQVWFPDSATKTAQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1968 ~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
++.|++..++||+|+|++++|+||||++|++ |+||||+|+||+||++|.++|+.|++++||++++++++++||+|++|+
T Consensus 436 ~~~e~~~~~~gG~l~pe~a~KaArfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~ 515 (758)
T 3k8x_A 436 NSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIP 515 (758)
T ss_dssp TCCCEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred chhhhHHhhcCCCCCHHHHHHHHHHHHHhhhccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHH
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMV 2126 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~ 2126 (2304)
|+|+++||||++|++++|+|+|++||||+|+++||+|||+|+|+||+++++++|+|+||+|++|++++++. +++.+++
T Consensus 516 RkGe~~GGA~~am~~~~~ad~~~v~Awp~A~isVM~pEgaa~Il~r~~~~~~~m~r~d~~~~~l~~~~~~~--~~~~~~~ 593 (758)
T 3k8x_A 516 PTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNK--SLAPEVH 593 (758)
T ss_dssp TTCEEETHHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSCCCCC----------------
T ss_pred cCCccchHHHHHhCcccCCCHHHHhcCCCCEEEccCHHHHHHHHhcchHHHHHHHhcCHHHHHHHHHhhhc--cCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887 6667889
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Q 000086 2127 ESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLT 2206 (2304)
Q Consensus 2127 ~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l~e~~~~~~~~~~~~~~~~ 2206 (2304)
++++++|++||++|+|+|+|+|++||||||||+||++||+|++||+|+++|+||||||||||+|++++++|.++++ .+|
T Consensus 594 ~~~~~~~~~re~~l~p~y~qva~~fadlHd~~~rm~~~g~i~~~~~w~~~r~~f~~rlrr~l~e~~~~~~~~~~~~-~~~ 672 (758)
T 3k8x_A 594 QQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQVG-EAS 672 (758)
T ss_dssp --------------HHHHHHHHHHHHHTTSBHHHHHHHTCSSEEECGGGHHHHHHHHHHHHHHHHHHHHHHHTSSS-CCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHhhCccccccchHHhHHHHHHHHHHHHhHHHHHHHHHhhCc-ccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 479
Q ss_pred HHHHHHHHHHhhhccccccccCCCccCchhHHHhhc-CchHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHHh
Q 000086 2207 HKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-DSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLS 2285 (2304)
Q Consensus 2207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2285 (2304)
+.+++++|++||.++ ..|+||++|++|++ +.+.++++|++||.+++.++|.++++++ ++.+++ |+.++++
T Consensus 673 ~~~~~~~l~~w~~~~-------~~w~~d~~~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 743 (758)
T 3k8x_A 673 RLEKIARIRSWYPAS-------VDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSD-HDNAID-GLSEVIK 743 (758)
T ss_dssp HHHHHHHHHTTSCTT-------SCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------------------
T ss_pred HHHHHHHHHHHhhcc-------CCccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHH-HHHHHHH
Confidence 999999999998643 24999999999999 8899999999999999999999998888 888894 9999999
Q ss_pred cCCHHHHHHHHHHHH
Q 000086 2286 KVDPSCREQLIGEIS 2300 (2304)
Q Consensus 2286 ~~~~~~~~~~~~~~~ 2300 (2304)
+||+++|+++++.|+
T Consensus 744 ~~~~~~~~~~~~~l~ 758 (758)
T 3k8x_A 744 MLSTDDKEKLLKTLK 758 (758)
T ss_dssp ---------------
T ss_pred hCCHHHHHHHHHhhC
Confidence 999999999999874
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-152 Score=1474.89 Aligned_cols=756 Identities=47% Similarity=0.821 Sum_probs=623.4
Q ss_pred cccccCCccccccccCchhhhhhhhhcccCCccccccCCCCCCCccccCCCcccchhhhhcccCccCCCCcchhHHHHHH
Q 000086 1493 VRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFE 1572 (2304)
Q Consensus 1493 ~~g~~~~~~~~~pY~~~~~~~~kr~~a~~~~t~y~yd~p~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1572 (2304)
..|+|||+|+++|||++++||+||++|+..||+|+||||+ ||+
T Consensus 18 ~~g~~~~~~~~~p~~~~~~l~~kr~~a~~~g~~y~yd~~~-------------------------------------~~~ 60 (793)
T 2x24_A 18 GSGPQHGMLINTPYVTKDLLQAKRFQAQSLGTTYVYDFPE-------------------------------------MFR 60 (793)
T ss_dssp -------------------CTTHHHHHHHTTSCCGGGHHH-------------------------------------HHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHH-------------------------------------HHH
Confidence 3899999999999999999999999999999999999999 999
Q ss_pred HHHHHhHhhhCCCCCCCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEecc
Q 000086 1573 TALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVT 1652 (2304)
Q Consensus 1573 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t 1652 (2304)
++...+|.+. ...|...+++.|++||+ +| +|.|+.+.+|.|++|||+|.++++||+||+||+|+|++||+|
T Consensus 61 ~a~~~~w~~~----~~~~~~~l~~~elllD~-~g----sf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~t 131 (793)
T 2x24_A 61 QALFKMWPSP----DKYPKDILTYTELVLDP-QG----QLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDIT 131 (793)
T ss_dssp HHHHHHSCSS----SCCCTTSEEEEEEEECT-TS----CEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECSS
T ss_pred HHHHHhhhhc----ccCCCCchhHHHHhcCC-CC----CEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECCc
Confidence 9999999752 23557789999999988 67 799999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhc--c
Q 000086 1653 FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG--S 1730 (2304)
Q Consensus 1653 ~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~--~ 1730 (2304)
|++||||+.+++||.|++++|++.|+|+|||++||||||+++|++++||||+|+|+.+|..||+|+|+|++++++++ +
T Consensus 132 ~~gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARig~~ee~~sl~qma~~d~~~p~~G~~~~yl~~~~~~~~sa~~ 211 (793)
T 2x24_A 132 FRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPEDPHKGIKYLYLTPQDYTRISSLN 211 (793)
T ss_dssp GGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCHHHHTTCEEEESSSSCSTTCEEEEEECHHHHHHTTTSC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCccchhhhhhhhcccccCccCcccchheeccchhHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred ceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCc
Q 000086 1731 SVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQ 1810 (2304)
Q Consensus 1731 ~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~ 1810 (2304)
+++.++++ ++||++|+|++|+|+++|+|++|+++||+|||+||+||.+|||||+|||||+|||||+++|||++||++++
T Consensus 212 ~v~~~~~~-~~ge~~~~i~~i~g~~~~i~v~~l~~SG~iag~~s~a~~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a 290 (793)
T 2x24_A 212 SVHCKHVE-EDGESRYVITDIIGKEEGLGVENLRGSGMIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENS 290 (793)
T ss_dssp SEEEEEEE-ETTEEEEEEEEECCSSSSSSTHHHHHHHHHHHHHHHHHHHSCEEEEECSEEETHHHHHHHHTCCEEEETTC
T ss_pred cccccccc-cccccceeeeccccccchHHHHHHHhccchhhccccccCCCCEEEEEecCCchHHHHHHhhCCeEEEeccc
Confidence 78888877 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecChHHHHHhhcccccccccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCc
Q 000086 1811 PIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVE 1890 (2304)
Q Consensus 1811 ~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~ 1890 (2304)
+|+||||++|++++|+++|+|+++|||+++|++||++|++++||.++++.+++||||+|.++.+++|..+|.||++|.++
T Consensus 291 ~i~ltGp~vi~~~~Ge~vy~s~e~LGGa~v~~~~Gv~d~vv~dd~ea~~~ir~~LsylP~~~~~~~p~~~~~d~~~rl~~ 370 (793)
T 2x24_A 291 HIILTGATALNKVLGRDVYTSNNQLGGVQIMHHNGVSHVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDPIDREIE 370 (793)
T ss_dssp EEESSCHHHHHHHHSSCCCSCHHHHHSHHHHTTTTSCSEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSSCCCC
T ss_pred cEEecCHHHHHHhcCCcccCChhhhccHHHHHhcCceEEEeCCHHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred cccC-CCCChHHHhhcccCCC--CCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCC
Q 000086 1891 YLPE-NSCDPRAAICGFLDNN--GKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQL 1967 (2304)
Q Consensus 1891 ~~P~-~~yD~r~~i~~~~d~~--~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p 1967 (2304)
++|. .+||+|++|++..++. |.|+++|||+++|+|++++||+++|||+|||+|+|||||||++++++..+||||+++
T Consensus 371 ivP~~~pyD~r~vI~g~~~~~~~~~~~~~l~D~g~F~E~~~~~g~~iVtG~ARl~G~pVGVIAn~~~~v~~~~padP~~~ 450 (793)
T 2x24_A 371 FQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQTVVTGRARLGGIPVGVIAAETRTVELVVPADPANL 450 (793)
T ss_dssp CCCCSSCCCHHHHHHCEECSSSSSCEECCSSCTTCCEEESCSSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTST
T ss_pred hCCCCCCCCHHHHHhcccccccccchhhccccCcceEEecCcccCcEEEEEEEECCEEEEEEEEccccccccccCCcccc
Confidence 9999 9999999999776644 689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1968 DSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1968 ~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
++.|+...++||+|+|++++|+||||++|++|++|||+|+||+||++|.++|+.|++++||++++++++++||+|++|+|
T Consensus 451 ~~~e~~~~~~gG~l~~~~a~KaarfI~~cd~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~r 530 (793)
T 2x24_A 451 DSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPP 530 (793)
T ss_dssp TCCCEEEEECTTEECHHHHHHHHHHHHHHHTTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECT
T ss_pred chhhhhhhhcCCcccHHHHHHHHHHHHHhccCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHH
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVE 2127 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~ 2127 (2304)
.|+++||||+++++++++|+||+||||+|+++||+|||+|+|+||++++.++|+|+|++|++|++++... +.++++++
T Consensus 531 ~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~VM~pEgaa~Il~r~~~l~~~m~~~~~~~~~l~~~~~~~--~~~~~~~~ 608 (793)
T 2x24_A 531 YAEVRGGSWAVMDTSINPLCIEMYADRESRASVLEPEGTVEIKYQKKDLVKTIRRLDPISKKLVEQLGVS--ELSDTDRK 608 (793)
T ss_dssp TCEEEHHHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSSCC-------------------
T ss_pred CCcccchhHHhhhcccCccHHHHhhhccCEEEecCHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHhcCC--CCCHHHHH
Confidence 8999999999999999999999999999999999999999999999988899999999999999887654 33455677
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCH
Q 000086 2128 SLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTH 2207 (2304)
Q Consensus 2128 ~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~ 2207 (2304)
++++++++|+++++|+|+|+|.+|+|+||+|+||+++|+||+||+|++||++|+|+|+|+|+|+.+++++.++++ .+++
T Consensus 609 ~~~~~i~~re~~~~p~y~~~a~~y~~~~~~p~r~a~~G~Id~VIdp~~TR~~l~~~L~~~l~e~~~~~~~~~~~~-~~~~ 687 (793)
T 2x24_A 609 ELEGQLKAREDLLLPMYHQVALHFADLHDTAGRMLEKGVIYDILEWKTARSFLYWRLRRLLLESQVKQEVLRACP-ELSH 687 (793)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTTSSSEEECHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHhcCCHHHHHHcCcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ccch
Confidence 888888889999999999999999999999999999999999999999999999999999999999999999977 5899
Q ss_pred HHHHHHHHHhhhccccccccCCCccCchhHHHhhc-Cc-------hHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHH
Q 000086 2208 KSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-DS-------RNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQG 2279 (2304)
Q Consensus 2208 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2279 (2304)
.+++++|++||.++. ++.....|+||+.|++|++ +. +.++++|++||.+++.++|.++++++ ++.++ +|
T Consensus 688 ~~~~~~~~~w~~~~~-~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 764 (793)
T 2x24_A 688 MHVQSMLRRWFVETE-GAVKAYLWDNNQTVVQWLEAHGQASDVLHSTIRENITCLRRDSALKTIQGLVQEN-PELAM-DS 764 (793)
T ss_dssp --CHHHHHHHHHHHH-CTTSGGGGGCHHHHHHHHHHCC------------------------------------------
T ss_pred HHHHHHHHHHHhhcc-cccccccccccHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cHhHH-HH
Confidence 999999999998754 3344568999999999999 43 34899999999999999999999998 77778 59
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 000086 2280 LATLLSKVDPSCREQLIGEISK 2301 (2304)
Q Consensus 2280 ~~~~~~~~~~~~~~~~~~~~~~ 2301 (2304)
+..++++|++++|+++++.|++
T Consensus 765 ~~~~~~~~~~~~~~~~~~~l~~ 786 (793)
T 2x24_A 765 LVYVSQHISPAERAQVIHLLST 786 (793)
T ss_dssp ----------------------
T ss_pred HHHHHhhCCHHHHHHHHHHHhc
Confidence 9999999999999999999964
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-98 Score=986.93 Aligned_cols=632 Identities=29% Similarity=0.469 Sum_probs=499.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++||++|++++ ++++|.+++++++++||+++.+++.+..++|+|.+.|+++
T Consensus 1 m~~kiLIanrGeia~riiraar~lGi~~v-----------av~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~ 69 (681)
T 3n6r_A 1 MFNKILIANRGEIACRVIKTARKMGISTV-----------AIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAA 69 (681)
T ss_dssp -CCCBCBSCCHHHHHHHHHHHGGGSCCBC-----------CEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 78999999999999999999999999996 5566888999999999999999888888899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~-------------- 135 (681)
T 3n6r_A 70 IRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYM-------------- 135 (681)
T ss_dssp HHHTCCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC----------------
T ss_pred HHHhCcCEEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..+.. +.+++||+|+++++|
T Consensus 136 -------~~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~re 208 (681)
T 3n6r_A 136 -------GLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208 (681)
T ss_dssp --------------------------------------------------------------------------CCSCEE
T ss_pred -------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcE
Confidence 126788899999999999999999999999999999999999999998876543 458999999999899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|++++|++|++++++.|+|++||+|||+++++|++.++++..++|.+.+.++++++||+|++++||++++ +|+||||
T Consensus 209 i~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~~~~l 287 (681)
T 3n6r_A 209 IEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFL 287 (681)
T ss_dssp EEEEEECCSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSCCCCC
T ss_pred EEEEEEEeCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999989999999999999999999999999999999994 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|||||+|++||++|+++|+|++++++++++|.|++. .+....+.||+|
T Consensus 288 EiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (681)
T 3n6r_A 288 EMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLSI--------------------------------TQGDVKLTGWAI 335 (681)
T ss_dssp EEECSCCTTHHHHHHHHTCCHHHHHHHHHTSCCCSS--------------------------------CTTTCCCCSEEE
T ss_pred ecccccCCCcHHhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccceeEEEE
Confidence 999999999999999999999999999999999863 234556789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccC-C-------------------CcEEEEEeeeeCCcccccCCCccEEEEEEeCC
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKS-K-------------------PNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s-~-------------------~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2304)
++|+|+|||.++|.|++|+|..+.+|. + ++|+++.++.+|+.|+++|||++||||+||+|
T Consensus 336 ~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~ 415 (681)
T 3n6r_A 336 ENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPT 415 (681)
T ss_dssp EEEEESEEGGGTTEECCEECSCEECCCC--------------------CCEEEEESCCTTCEECTTSCCEEEEEEEEESS
T ss_pred EEEEecCCcccccCCCCcEEEEEECCCCCcccccccccccccccccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCC
Confidence 999999999999999999999998887 3 37999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhhhhhhccCCCCchh----HHHhhHHHHHHH
Q 000086 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYL----SVVGGALYKASA 578 (2304)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~----~~~~~a~~~~~~ 578 (2304)
|++|+++|.+||+++.|+| ++||++||++||+||+|++|+++|+|||+++++.+....++... +++++++..+.
T Consensus 416 r~~a~~~~~~al~~~~i~g-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 493 (681)
T 3n6r_A 416 RAAAIEAMRIALDSFEVEG-IGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLPETDLRRVAAAAAAMHRVA- 493 (681)
T ss_dssp HHHHHHHHHHHHHHCEECS-SCCSHHHHHHHHHCHHHHHCCCCSSHHHHHCTTSCCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCEEEC-ccCCHHHHHHHhCCHhhccCCcccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999 99999999999999999999999999999998887766555322 22222222221
Q ss_pred hhhhhhcccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeeCCCeEEEee-CCeEEEEEEEEecCCc--eEEEeC
Q 000086 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRM-NESEIEAEIHTLRDGG--LLMQLD 655 (2304)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~y~v~v~~~~~~~y~l~i-ng~~~~V~v~~l~dg~--l~v~~~ 655 (2304)
......+ .|+.+... ........+.++|.+|.++++. +++.|.+.+ ||..+.+.. .+.++. +.+.+|
T Consensus 494 --~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 563 (681)
T 3n6r_A 494 --EIRRTRV-----SGRMDNHE-RRVGTEWVVTLQGADFPVTIAA-DHDGSTVSFDDGSSMRVTS-DWTPGDQLANLMVD 563 (681)
T ss_dssp --HHHHTTC-----TTCCTTCC-CCCCSEEEEECSSCEEEEEEEE-CSSCEEEEETTSCEEEEEE-CCCTTCSEEEEEET
T ss_pred --hhccccc-----ccCCCccc-cCCCcCEEEEECCEEEEEEEEE-cCCeEEEEEeCCcEEEEEE-EecCCCeEEEEEEC
Confidence 1111112 22322211 1111223344489999999987 667799999 898887763 234454 668899
Q ss_pred CeeEEEEeeecccceEEEEeCceeccc-----------------cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 656 GNSHVVYAEEEAAGTRLLIDGRTCLLQ-----------------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 656 G~s~~v~~~ee~~~~~v~v~g~t~~~~-----------------~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
|.++.+++......+++..+|.++.+. ...+++.|+|||||+|++|+|++||+|++||+|++|
T Consensus 564 G~~~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~i 643 (681)
T 3n6r_A 564 GAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTI 643 (681)
T ss_dssp TEEEEEEEEEETTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CEEEEEEEEEeCCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCCcEEEEEEEeCCCCEEcCCCEEEEE
Confidence 999999998888889998888877552 134578999999999999999999999999999999
Q ss_pred EccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 719 EVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 719 EaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
|+|||+++|+||.+|+|+++ +++|++|+.|++|++|+
T Consensus 644 EamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 644 EAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp ECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred EecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 99999999999999999999 99999999999999985
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-95 Score=941.62 Aligned_cols=553 Identities=54% Similarity=0.943 Sum_probs=469.1
Q ss_pred cccccCCC-CCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEE
Q 000086 7 RSAMAGLG-RGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVA 85 (2304)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~ 85 (2304)
|++|||++ .-+++...+++...+..++++++||++.||++||+||||||||++|+++||+||+|||++|++++||++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVa 93 (587)
T 3jrx_A 14 RPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVV 93 (587)
T ss_dssp -------------------CCTTCCCCSSHHHHHHHTTCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEE
T ss_pred CCCCCcchhhcCchhhhhhhhccceeecCHHHHHHhcCCCcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEE
Confidence 67899997 22223333455678888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHH
Q 000086 86 MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPAT 165 (2304)
Q Consensus 86 vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~e 165 (2304)
|++++|.+++++++++||+++.+|+.++.++|+|++.|+++|++.++|+|||||||++|++.+++.|++.|++|+||+++
T Consensus 94 v~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ 173 (587)
T 3jrx_A 94 MVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSE 173 (587)
T ss_dssp EECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHH
T ss_pred EecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHH
Confidence 99988888999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 166 am~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
+++.++||..++++++++|||+|||..++++++. ....+.+|++.|.++++.+.+++.++++++||||||||+.
T Consensus 174 ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~ 253 (587)
T 3jrx_A 174 AMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASE 253 (587)
T ss_dssp HHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETT
T ss_pred HHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCC
Confidence 9999999999999999999999999864432211 1235678999999999999999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCC
Q 000086 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2304)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~ 319 (2304)
|+||+||++|++.+||.++++++..+..++++|||+|+++++|++|++++|++|+++++++|||++||+|||+++++|++
T Consensus 254 GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~ 333 (587)
T 3jrx_A 254 GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPAT 333 (587)
T ss_dssp CCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCC
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCC
Confidence 99999999999999999999999988888899999999998999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 320 ~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
.+++++.++|.+.|.++++++||+|+++|||++++ +|++||||||||+|++|++||+++|+|++++|+++++|.||+.+
T Consensus 334 ~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~ 412 (587)
T 3jrx_A 334 IAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRL 412 (587)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS-SSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccc
Confidence 88999999999999999999999999999999984 68899999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee
Q 000086 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479 (2304)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v 479 (2304)
+|||.+||..|.+ ++.|+|.. ....+.++||+|+||||||||.++|.|++|+|+.+++|++++||+++++
T Consensus 413 ~di~~~~~~~~~~---------~~~~~~~~-~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 482 (587)
T 3jrx_A 413 KDIRLLYGESPWG---------VTPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 482 (587)
T ss_dssp HHHHHHTTCCTTC---------CCCCCSSS-CSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECC
T ss_pred hhccccccccccc---------cccccccc-ccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccc
Confidence 9999999999987 78888842 1123678999999999999999999999999999999999999999988
Q ss_pred eeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhhhhhhcc
Q 000086 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA 559 (2304)
Q Consensus 480 ~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~ 559 (2304)
..++.|++||||++||||+||+||++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||+++++++.+
T Consensus 483 ~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~g~~~t~~~~~~~~~~~~~ 562 (587)
T 3jrx_A 483 AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLIAEKVQA 562 (587)
T ss_dssp C----------CCEEEEEEEESSHHHHHHHHHHHHHHHHHSSTTSSTTHHHHHHHTSHHHHTTCSCCGGGGC--------
T ss_pred cccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEEeCCCCCcHHHHHHHhCChhhccCCcchhHHhHhhhhhccc
Confidence 88888999999999999999999999999999999999999977999999999999999999999999999999999988
Q ss_pred CCCCchhHHHh
Q 000086 560 ERPPWYLSVVG 570 (2304)
Q Consensus 560 ~~~~~~~~~~~ 570 (2304)
++|+++++++-
T Consensus 563 ~~~~~~~~~~~ 573 (587)
T 3jrx_A 563 EKPDIMLGVLE 573 (587)
T ss_dssp -----------
T ss_pred CCCcchhhhhh
Confidence 99998887653
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-89 Score=879.39 Aligned_cols=514 Identities=56% Similarity=0.978 Sum_probs=435.4
Q ss_pred ccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEc
Q 000086 29 PAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEV 108 (2304)
Q Consensus 29 ~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~v 108 (2304)
+..++++++||+..||++||+||||||||++|+++||+||+|||++|++++||++|+|++++|.+++++++++||+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i 100 (540)
T 3glk_A 21 DFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 100 (540)
T ss_dssp CCCCSSHHHHHHHTTCSCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEEC
T ss_pred CccccCHHHHHHhcCCcccccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 109 PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 109 p~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
|+.++.++|+|++.|+++|++.++|+|||||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+|
T Consensus 101 ~~~~~~~sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp 180 (540)
T 3glk_A 101 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTL 180 (540)
T ss_dssp CCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBC
T ss_pred CCCCcccccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCC
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000086 189 PWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2304)
Q Consensus 189 p~s~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2304)
||..++++++. ....+.+|++.|..+++.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~ 260 (540)
T 3glk_A 181 PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQV 260 (540)
T ss_dssp CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHH
T ss_pred CcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHH
Confidence 99763332211 112456888888888999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCc
Q 000086 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2304)
Q Consensus 263 ~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy 342 (2304)
..+..+++++||+|+++++|++|++++|++|+++++++|+|++||+|||+++++|++.++++..++|.+.|.++++++||
T Consensus 261 ~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~ 340 (540)
T 3glk_A 261 QSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGY 340 (540)
T ss_dssp HHHSTTCCEEEEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 98887889999999999899999999999999999999999999999999999999988999999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
+|+++|||++++ +|++||||||||+|++|+++|+++|+|++++|+++++|.||+.+++||.+||..|.+ +
T Consensus 341 ~G~~~VEf~~d~-dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~---------~ 410 (540)
T 3glk_A 341 VSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG---------V 410 (540)
T ss_dssp CEEEEEEEEEET-TSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSC---------C
T ss_pred ccceEEEEEEcC-CCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCccccccccccccccccc---------c
Confidence 999999999984 688999999999999999999999999999999999999999999999999998876 6
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCC
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2304)
..|.|.. ....+.++||+|+||||||||.++|.|++|+|+.+.+|++++||+++++..++.|++||||++||||+||+|
T Consensus 411 ~~~~~~~-~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~ 489 (540)
T 3glk_A 411 TPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGEN 489 (540)
T ss_dssp SCCCSCC-C----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC------------CEEEEEEEESS
T ss_pred ccccccc-ccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCC
Confidence 7777742 111367899999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
|++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||++|
T Consensus 490 r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 540 (540)
T 3glk_A 490 REEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLI 540 (540)
T ss_dssp HHHHHHHHHHHHHHHTCC----HHHHHHHHHHHSHHHHHTCC---------
T ss_pred HHHHHHHHHHHHhccEEecccCCcHHHHHHHhCChhhcCCCccchhhhhcC
Confidence 999999999999999999966999999999999999999999999999875
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-79 Score=779.51 Aligned_cols=417 Identities=22% Similarity=0.353 Sum_probs=375.2
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++|||||++||||+++++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 82 ~dgvvtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGGARmq--eg~~sl~~ 153 (523)
T 1on3_A 82 ADGVVTGRGTI------LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQ--EGIDSLSG 153 (523)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--hHHHHHHH
Confidence 57899999886 99999999999999999999999999999999999999999999999999999 88999987
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 154 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 170 (523)
T 1on3_A 154 YG------------KMFF----------------------------------------ANVKLSGV-----------VPQ 170 (523)
T ss_dssp HH------------HHHH----------------------------------------HHHHHTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHhcCC-----------CCE
Confidence 76 1111 11122333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1861 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i 1861 (2304)
|+++||||+||+||.++|||++||++++.|+||||++|++++|+++ ++++|||+++|. .||++|++++||.++++.+
T Consensus 171 Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aGP~vI~~~~ge~~--~~e~lggae~h~~~~G~vd~vv~d~~~~~~~~ 248 (523)
T 1on3_A 171 IAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIA 248 (523)
T ss_dssp EEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC--CHHHHHSHHHHHHTTCCCSEEESSHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecCHHHHHHHhCCcC--ChHhcccHHHHhhccCceEEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 778999999998 7999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCC---CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEE
Q 000086 1862 LKWLSYVPPHIGGALPIISPLDPPDR---PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVV 1935 (2304)
Q Consensus 1862 ~~~LsylP~~~~~~~p~~~~~d~~~r---~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vV 1935 (2304)
++||+|+|.++.+.+|..++.|++++ ...++|. ++||+|++|++ |||+++|+|++++||+++|
T Consensus 249 r~lL~~lp~~~~~~~p~~~~~d~p~~~~~l~~~vp~~~~~~~d~r~~I~~-----------l~D~g~f~E~~~~~~~~iv 317 (523)
T 1on3_A 249 KKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAK-----------IVDWGDYLEVKAGYATNLV 317 (523)
T ss_dssp HHHHHTSCSSTTSCCCCCSCCCCCCCCGGGGGTSCSSTTCCCCTHHHHHH-----------HSGGGCEEEESTTSSTTEE
T ss_pred HHHHHhcCccCcccCCCCCCCCCccchhhhhhhcCCCCCCCCCHHHHHHH-----------hCCCCeEEEecCCCcCcEE
Confidence 99999999998888887777777776 5567887 89999999997 8999999999999999999
Q ss_pred EEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCc
Q 000086 1936 TGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGG 2015 (2304)
Q Consensus 1936 tG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G 2015 (2304)
||+|||+|+|||||||+++. .||+|++++++|++|||++|+++++|||+|+||+||++|
T Consensus 318 ~G~ari~G~~Vgvian~~~~---------------------~~G~~~~~~a~Kaar~i~~~~~~~iPlv~lvDtpGf~~G 376 (523)
T 1on3_A 318 TAFARVNGRSVGIVANQPSV---------------------MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPG 376 (523)
T ss_dssp EEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCC
T ss_pred EEEEEECCEEEEEEEecCCc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcCcc
Confidence 99999999999999996542 489999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchh
Q 000086 2016 QRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2016 ~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
.++|..|++++||++++++++++||+|++|+ |+++||+|++++++ +++|+ +||||+|+++||+|||+++|+||++
T Consensus 377 ~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r~~ 452 (523)
T 1on3_A 377 VQQEYGGIIRHGAKMLYAYSEATVPKITVVL--RKAYGGSYLAMCNRDLGADA--VYAWPSAEIAVMGAEGAANVIFRKE 452 (523)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHTTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHH
T ss_pred hHHHHhhHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcccCCCCCE--EEEcCCCeEEecCHHHHHHHHhhhh
Confidence 9999999999999999999999999999999 77899999999885 99998 9999999999999999999999975
Q ss_pred hHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc
Q 000086 2095 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD 2174 (2304)
Q Consensus 2095 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~ 2174 (2304)
++ .. .++ +++. ++++.+|++.|++|.++++.|+||+||+|+
T Consensus 453 --~~-----------------~~---~d~---~~~~--------------~~~~~~y~~~~~~p~~~a~~g~iD~II~p~ 493 (523)
T 1on3_A 453 --IK-----------------AA---DDP---DAMR--------------AEKIEEYQNAFNTPYVAAARGQVDDVIDPA 493 (523)
T ss_dssp --HH-----------------HS---SCH---HHHH--------------HHHHHHHHHHHSSHHHHHHTTSSSEECCGG
T ss_pred --hh-----------------cc---cCH---HHHH--------------HHHHHHHHHhhCCHHHHHhcCCCCEeeCHH
Confidence 11 10 011 1111 235678999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q 000086 2175 KSRSFFCRRLRRR 2187 (2304)
Q Consensus 2175 ~tR~~~~~~L~r~ 2187 (2304)
+||++|+++|+..
T Consensus 494 ~tR~~l~~~L~~l 506 (523)
T 1on3_A 494 DTRRKIASALEMY 506 (523)
T ss_dssp GHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999753
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-78 Score=768.93 Aligned_cols=416 Identities=25% Similarity=0.394 Sum_probs=372.6
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++||+||++||+|+.+++|+.|++|+|.+.|+|+|+|++||||||| |++.+|++
T Consensus 85 ~dgvVtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~q--eg~~~l~g 156 (527)
T 1vrg_A 85 RDGVITGVGEI------NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQ--EGVDALAG 156 (527)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCcc--chhHHHHH
Confidence 47899999876 99999999999999999999999999999999999999999999999999999 88888876
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+| .+|.+.||. +|+
T Consensus 157 ~~------------~~~----------------------------------------~~~~~~s~~-----------iP~ 173 (527)
T 1vrg_A 157 YG------------EIF----------------------------------------LRNTLASGV-----------VPQ 173 (527)
T ss_dssp HH------------HHH----------------------------------------HHHHHHTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhCCC-----------CCE
Confidence 65 111 112223333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|||||+||+||.++|||++||+++ +.|+||||++|++++|+++ ++++|||+++|. +||++|++++||.++++.
T Consensus 174 Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~aGP~vi~~~~ge~v--~~e~lggae~~~~~~G~vd~vv~d~~~~~~~ 251 (527)
T 1vrg_A 174 ITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGNAHFLADNDEKAMSL 251 (527)
T ss_dssp EEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHcCCeEEEecCceEEEecCHHHHHHHhCCCC--CccccccHHHHhhcccceEEEecCHHHHHHH
Confidence 999999999999999999999999999 8999999999999999999 778999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCe
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1933 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~ 1933 (2304)
+++||+|+|.++.+.+|..++.|| ++. ..++|. +|||+|++|+. |||++||+|+++.||++
T Consensus 252 ~~~~Ls~lp~~~~~~~~~~~~~dp-~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D~g~f~E~~~~~~~~ 319 (527)
T 1vrg_A 252 VRTLLSYLPSNNAEEPPVEDPDTS-LETPEDILDILPDNPNKGYDVRDVIKR-----------VVDHGEFFEVQPYFAKN 319 (527)
T ss_dssp HHHHHTTSCSSTTSCCCBCSCCCC-CCCCGGGGGSSCSSTTSCCCTHHHHHH-----------HSGGGCCEEESTTSSTT
T ss_pred HHHHHHhcCccCcccCCCCCCCCC-CcChHHHhhhccCCCCCCcCHHHHHHH-----------hcCCCeEEEecCCCcCc
Confidence 999999999988888887776666 443 567888 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCC
Q 000086 1934 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 2013 (2304)
Q Consensus 1934 vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~ 2013 (2304)
+|||+|||+|+||||||++++. .||+|++++++|++|||++|+++++|||+|+||+||+
T Consensus 320 vV~G~ari~G~~V~via~~~~~---------------------~~G~~~~~~~~Kaar~i~~a~~~~~Plv~lvDtpG~~ 378 (527)
T 1vrg_A 320 IVIGFARIQGKTVGIVANQPSV---------------------LAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYL 378 (527)
T ss_dssp EEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBC
T ss_pred EEEEEEEECCEEEEEEEEcCcc---------------------cCCCCCHHHHHHHHHHHHHHhhcCCCeEEEecCCCCc
Confidence 9999999999999999996543 4899999999999999999999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2014 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2014 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
+|.++|..|+++++|++++++++++||+|++|+ |+++||+|++|+++ +++|+ +||||+|+++||+|||+++|+||
T Consensus 379 ~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~--g~~~gGg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r 454 (527)
T 1vrg_A 379 PGVAQEHGGIIRHGAKLLYAYSEATVPKITVIL--RKAYGGAYIAMGSKHLGADM--VLAWPSAEIAVMGPEGAANIIFK 454 (527)
T ss_dssp CCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTH
T ss_pred CchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcCCCCCCCE--EEEcCCCeEEecCHHHHHHHHhh
Confidence 999999999999999999999999999999999 78899999999984 99998 99999999999999999999999
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
++ ++.+ .++ +++. ++++.+|+++|++|.++++.|+||+||+
T Consensus 455 ~~--~~~~--------------------~d~---~~~~--------------~~~~~~y~~~~~~p~~~~~~g~iD~II~ 495 (527)
T 1vrg_A 455 RE--IEAS--------------------SNP---EETR--------------RKLIEEYKQQFANPYIAASRGYVDMVID 495 (527)
T ss_dssp HH--HHHS--------------------SCH---HHHH--------------HHHHHHHHHHTSSHHHHHHTTSSSEECC
T ss_pred hh--hhcc--------------------cCH---HHHH--------------HHHHHHHHHhhCCHHHHHHcCCCCeeeC
Confidence 76 1111 011 1111 1356789999999999999999999999
Q ss_pred ccchHHHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~r~ 2187 (2304)
|++||++|+++|+..
T Consensus 496 p~~tR~~l~~~L~~l 510 (527)
T 1vrg_A 496 PRETRKYIMRALEVC 510 (527)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999753
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-78 Score=767.59 Aligned_cols=417 Identities=23% Similarity=0.347 Sum_probs=369.1
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|++
T Consensus 84 ~dgvVtG~G~I------~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGaRmq--Eg~~~l~~ 155 (530)
T 3iav_A 84 GDGVVTGYGTV------DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ--EGVASLGA 155 (530)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchh--hhhhhHHH
Confidence 56899999886 99999999999999999999999999999999999999999999999999998 99999876
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 156 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 172 (530)
T 3iav_A 156 YG------------EIFR----------------------------------------RNTHASGV-----------IPQ 172 (530)
T ss_dssp HH------------HHHH----------------------------------------HHHHTTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHHcCC-----------CCE
Confidence 65 1211 11223333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|+|||+||+||.++|+|++||+++ +.|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++.
T Consensus 173 Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~aGP~vi~~~~ge~v--~~e~LGGa~~h~~~sGv~d~va~de~~a~~~ 250 (530)
T 3iav_A 173 ISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEY 250 (530)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEecCcchHHHHHHHhCCEEEEecCCcEEEecCHHHHHHHhCCcC--ChhhcchHHHHHhccCceeEEecChHHHHHH
Confidence 999999999999999999999999987 8999999999999999999 899999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCC--CCC----CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCC
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDP--PDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA 1931 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~--~~r----~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a 1931 (2304)
+++||||||.++.+.+|..++.|| +++ ...++|. ++||+|++|++ |||.++|+|++++||
T Consensus 251 ~r~~ls~lp~~~~~~~p~~~~~dp~~~~~~~~~l~~ivp~~~~~~yd~r~~I~~-----------l~D~~~f~E~~~~~~ 319 (530)
T 3iav_A 251 VKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEH-----------VLDDAEFFETQPLFA 319 (530)
T ss_dssp HHHHHHHSCSSTTSCCCCCCCCCCCSCCHHHHHGGGSSCSSTTCCCCHHHHHHT-----------TSGGGCCEEESTTSC
T ss_pred HHHHHHhccccCCCCCCCCCCCCcccccCChHhHHHhccCCCCCCCCHHHHHHH-----------HcCCcceeeeccccC
Confidence 999999999998888887777676 443 3567887 99999999997 799999999999999
Q ss_pred CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCC
Q 000086 1932 RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRG 2011 (2304)
Q Consensus 1932 ~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~G 2011 (2304)
+++|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+|
T Consensus 320 ~~iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpG 378 (530)
T 3iav_A 320 PNILTGFGRVEGRPVGIVANQPM---------------------QFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPG 378 (530)
T ss_dssp TTEEEEEEEETTEEEEEEEECTT---------------------SGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred ceEEEEEEEECCEEEEEEEecCc---------------------ccCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeeCCC
Confidence 99999999999999999999543 348999999999999999999999999999999999
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhh
Q 000086 2012 FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIK 2090 (2304)
Q Consensus 2012 f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~ 2090 (2304)
|++|.++|+.|++++||++++++++++||+|++|+ |+++||+|++|+++ +++|+ +||||+|+++||+|||+++|+
T Consensus 379 f~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~--g~~~GGa~~am~~~~~~~d~--~~awp~a~~~Vm~~egaa~il 454 (530)
T 3iav_A 379 FLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVIT--RKAFGGAYVVMGSKHLGADL--NLAWPTAQIAVMGAQGAVNIL 454 (530)
T ss_dssp BCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHH
T ss_pred CCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEe--CCcchHHHHHhcCCCCCCCE--EEEcCCceEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999 67799999999976 89999 999999999999999999999
Q ss_pred cchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCccee
Q 000086 2091 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2170 (2304)
Q Consensus 2091 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~v 2170 (2304)
||++.. +. . ++.+++++ ++..+|.+.+.+|+++++.|+||+|
T Consensus 455 ~r~~~~-------------------~~--~---~d~~~~~~--------------~~~~~y~~~~~~p~~aa~~~~vD~V 496 (530)
T 3iav_A 455 HRRTIA-------------------DA--G---DDAEATRA--------------RLIQEYEDALLNPYTAAERGYVDAV 496 (530)
T ss_dssp TSTTTS-------------------TT--C---TTCHHHHH--------------HHHHHHHHHHSSSHHHHHTTSSSEE
T ss_pred hhhhhh-------------------hc--c---cCHHHHHH--------------HHHHHHHHhcCCHHHHHhcCCCCcc
Confidence 998711 00 0 01112222 2344555655677789999999999
Q ss_pred cCccchHHHHHHHHHH
Q 000086 2171 VDWDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2171 i~~~~tR~~~~~~L~r 2186 (2304)
|+|++||+++...|+.
T Consensus 497 IdP~~TR~~l~~~l~~ 512 (530)
T 3iav_A 497 IMPSDTRRHIVRGLRQ 512 (530)
T ss_dssp CCGGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999998864
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-78 Score=770.14 Aligned_cols=420 Identities=23% Similarity=0.357 Sum_probs=372.0
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++|||||++||||+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 95 ~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGGARmq--eg~~sl~~ 166 (548)
T 2bzr_A 95 GDGVVTGYGTI------DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQ--EGVVSLGL 166 (548)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSCCGG--GTTHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCccccCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCCCCch--hHHHHHHH
Confidence 57799999876 99999999999999999999999999999999999999999999999999999 88999877
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 167 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 183 (548)
T 2bzr_A 167 YS------------RIFR----------------------------------------NNILASGV-----------IPQ 183 (548)
T ss_dssp HH------------HHHH----------------------------------------HHHHTTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHhcCC-----------CcE
Confidence 65 1221 12223443 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|||||+||+||.++|||++||+++ +.|+||||++|++++|+++ ++++|||+++|. .||++|++++||.++++.
T Consensus 184 Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~aGP~vI~~~~ge~v--~~e~lggae~h~~~sG~~d~vv~d~~~~~~~ 261 (548)
T 2bzr_A 184 ISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDY 261 (548)
T ss_dssp EEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSSCCSEEESSHHHHHHH
T ss_pred EEEecCCCchHHHHHHHhCCeEEeccCceeEEeccHHHHHHHhCCcC--ChHhcccHHHHhhccCceeEEeCCHHHHHHH
Confidence 999999999999999999999999998 8999999999999999999 778999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCC-------CCCCC----CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceec
Q 000086 1861 ILKWLSYVPPHIGGALPIISPL-------DPPDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVET 1926 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~-------d~~~r----~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~ 1926 (2304)
+++||+|+|.++.+.+|..++. |++++ ...++|. +|||+|++|++ |||++ |+|+
T Consensus 262 ~r~lls~lp~~~~~~~p~~~~~~~~~~~~d~p~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D~~-f~E~ 329 (548)
T 2bzr_A 262 VRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITR-----------LLDDE-FLEI 329 (548)
T ss_dssp HHHHHTTSCSSTTSCCCCCCCCCCCSSGGGSCCHHHHHGGGTSCSSTTCCCCTHHHHHH-----------HSSSC-CEEE
T ss_pred HHHHHHhcCccCcccCCCCCccccccccCCCCCCChHHHhhhCCCCCCCCCCHHHHHHH-----------HcCCC-eEEe
Confidence 9999999999888877776664 66665 3567888 89999999997 79998 9999
Q ss_pred ccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEE
Q 000086 1927 LEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFIL 2006 (2304)
Q Consensus 1927 ~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l 2006 (2304)
+++|++++|||+|||+|+|||||||+++. .||+|++++++|++|||++|+++++|||+|
T Consensus 330 ~~~~~~~vV~G~ari~G~~Vgvian~~~~---------------------~~G~l~~~~a~Kaar~i~~a~~~~iPlv~l 388 (548)
T 2bzr_A 330 QAGYAQNIVVGFGRIDGRPVGIVANQPTH---------------------FAGCLDINASEKAARFVRTCDCFNIPIVML 388 (548)
T ss_dssp STTSSTTEEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccCccEEEEEEEECCEEEEEEEECCcc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999997553 489999999999999999999999999999
Q ss_pred ecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccc
Q 000086 2007 ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2007 ~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+||+||++|.++|+.|++++|+++++++++++||+|++|+ |+++||+|++|+++ +++|+ +||||+|+++||+|||
T Consensus 389 vDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~a~i~Vmgpeg 464 (548)
T 2bzr_A 389 VDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVIT--RKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASG 464 (548)
T ss_dssp EEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred eeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhccccCCCCE--EEEcCCCEEEecCHHH
Confidence 9999999999999999999999999999999999999999 77899999999874 99999 9999999999999999
Q ss_pred hhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcC
Q 000086 2086 MIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2165 (2304)
Q Consensus 2086 ~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G 2165 (2304)
+++|+||++. +.++ +. .++.++++ +++..+|.+.|++|.++++.|
T Consensus 465 aa~Il~r~~~--~~~~--------------~~-----g~~~~~~~--------------~~~~~~y~~~~~~p~~~a~~g 509 (548)
T 2bzr_A 465 AVGFVYRQQL--AEAA--------------AN-----GEDIDKLR--------------LRLQQEYEDTLVNPYVAAERG 509 (548)
T ss_dssp HHHHHTCCC-------------------------------CHHHH--------------HHHHHHHHHHHSBSHHHHHTT
T ss_pred HHHHHhhhHH--hhhh--------------cc-----cccHHHHH--------------HHHHHHHHHhhCCHHHHHhcC
Confidence 9999999861 1110 00 01122222 234567889999999999999
Q ss_pred CcceecCccchHHHHHHHHHHH
Q 000086 2166 VIKEVVDWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2166 ~Id~vi~~~~tR~~~~~~L~r~ 2187 (2304)
+||+||+|++||++|+++|+..
T Consensus 510 ~iD~II~p~~tR~~l~~~L~~l 531 (548)
T 2bzr_A 510 YVGAVIPPSHTRGYIGTALRLL 531 (548)
T ss_dssp SSSEECCGGGHHHHHHHHHHHT
T ss_pred CCceeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999754
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-78 Score=761.56 Aligned_cols=412 Identities=24% Similarity=0.372 Sum_probs=366.1
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|++
T Consensus 92 ~dgVVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGARmq--eg~~sl~~ 163 (531)
T 3n6r_B 92 GDGVVTGWGTI------NGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQ--EGVDSLAG 163 (531)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGG--GTHHHHHH
T ss_pred CCCEEEEEEEE------CCEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCccccC--cccchhhh
Confidence 57899999886 99999999999999999999999999999999999999999999999999999 89999876
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
++ .+| ..+.+.||. ||+
T Consensus 164 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 180 (531)
T 3n6r_B 164 YG------------EVF----------------------------------------QRNIMASGV-----------VPQ 180 (531)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHHhCC-----------CCE
Confidence 65 111 112333443 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++|+|||+||+||.++++|++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 181 Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~aGP~vI~~~~ge~v--~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~ 258 (531)
T 3n6r_B 181 ISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEQV--SAEELGGATTHTRKSSVADAAFENDVEALAE 258 (531)
T ss_dssp EEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTTSCCSEEESSHHHHHHH
T ss_pred EEEEeCCcchHHHHHhhhCCEEEEecCCceEeecCHHHHHHHhCCcc--ChhhcchHHHHhhccCcceEEeCCHHHHHHH
Confidence 999999999999999999999999997 8999999999999999999 899999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCe
Q 000086 1861 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1933 (2304)
Q Consensus 1861 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~ 1933 (2304)
+++||+|||.++.+.+|..++.|++++. ..++|. +|||+|++|++ |||+++|+|++++||++
T Consensus 259 ~r~lls~Lp~~~~~~~p~~~~~d~~~~~~~~l~~ivp~~~~~pyd~r~vI~~-----------l~D~~~f~E~~~~~~~~ 327 (531)
T 3n6r_B 259 VRRLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHK-----------LADEGDFYEIQEEFAKN 327 (531)
T ss_dssp HHHHHTTSCSSSSSCCCBCCCCSCTTCCCGGGGGTSCSSTTCCCCHHHHHHH-----------HSTTSCCEEESTTSSTT
T ss_pred HHHHHHhccccCCCCCCCCCCCCCcccChHHHHhhCCCCcCCCcCHHHHHHh-----------ccCCcceEEecccCCCc
Confidence 9999999999988888877776776654 356887 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCC
Q 000086 1934 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 2013 (2304)
Q Consensus 1934 vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~ 2013 (2304)
+|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+||+
T Consensus 328 iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~lvDtpGf~ 386 (531)
T 3n6r_B 328 IITGFIRLEGRTVGVVANQPL---------------------VLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFL 386 (531)
T ss_dssp EEEEEEEETTEEEEEEEECTT---------------------TGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECSBC
T ss_pred EEEEEEEECCEEEEEEEeccc---------------------ccCCCCCHHHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 999999999999999999543 34799999999999999999999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcc
Q 000086 2014 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2092 (2304)
Q Consensus 2014 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r 2092 (2304)
+|.++|+.|++++||++++++++++||+|++|+ |+.+||+|++|+++ +++|+ +||||+|+++||+|||+++|+||
T Consensus 387 ~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~A~i~Vm~pegaa~Il~r 462 (531)
T 3n6r_B 387 PGTSQEYGGVIKHGAKLLYAYGEATVPMVTVIT--RKAYGGAYVVMSSKHLRADF--NYAWPTAEVAVMGAKGATEIIHR 462 (531)
T ss_dssp CSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHCC
T ss_pred CCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEc--CCccchhhhhccCccCCCCe--EEEcCCceEecCCHHHHHHHHhc
Confidence 999999999999999999999999999999999 67799999999875 99999 99999999999999999999999
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecC
Q 000086 2093 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172 (2304)
Q Consensus 2093 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~ 2172 (2304)
++. ++ +++ .+++ ..+|.+.+.+|+++++.|+||+||+
T Consensus 463 ~~~-------------------~~------~~~---~~~~---------------~~~y~~~~~~p~~aa~~~~vD~vId 499 (531)
T 3n6r_B 463 GDL-------------------GD------PEK---IAQH---------------TADYEERFANPFVASERGFVDEVIQ 499 (531)
T ss_dssp TTT-------------------TS------TTH---HHHH---------------HHHHHHHHSSSHHHHHHTSSSEECC
T ss_pred ccc-------------------cc------hhH---HHHH---------------HHHHHHHhcCHHHHHhcCccCcccC
Confidence 761 00 011 1111 2334444556778999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000086 2173 WDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2173 ~~~tR~~~~~~L~r 2186 (2304)
|++||+++...|+-
T Consensus 500 P~~TR~~l~~~l~~ 513 (531)
T 3n6r_B 500 PRSTRKRVARAFAS 513 (531)
T ss_dssp GGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988864
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-75 Score=806.66 Aligned_cols=447 Identities=30% Similarity=0.503 Sum_probs=403.5
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000086 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2304)
Q Consensus 45 ~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~I 123 (2304)
|+||+||||+|+|++|++++|+|+++|++++ +++++.+..+.+.++||+++.+|+. ....+|+|++.|
T Consensus 1 M~~~kkVLIagrGeia~riiraa~elGi~vV-----------av~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~I 69 (1150)
T 3hbl_A 1 MKQIKKLLVANRGEIAIRIFRAAAELDISTV-----------AIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERI 69 (1150)
T ss_dssp --CCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EEEcCCcccchhhhhcceeeecCCCCCccccccCHHHH
Confidence 4689999999999999999999999999885 4445667889999999999999865 445799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcc
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~ 203 (2304)
+++|+++++|+||||||+++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 70 i~~a~~~~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~----------- 138 (1150)
T 3hbl_A 70 IDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTD----------- 138 (1150)
T ss_dssp HHHHHHTTCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCS-----------
T ss_pred HHHHHHhCCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred cccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000086 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2304)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g 279 (2304)
..+.+.+++.++++++||||||||+.|+||+|+++|++.+||.++++.+..+.. +.+++||+|+++
T Consensus 139 ----------~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G 208 (1150)
T 3hbl_A 139 ----------GPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN 208 (1150)
T ss_dssp ----------SCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSS
T ss_pred ----------cCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCC
Confidence 015667778888999999999999999999999999999999999998876643 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
++|++|++++|++|+++++++|+|++||+|||.++.+|++.++++..++|.+.+.++++++||+|++++||+++ ++++
T Consensus 209 ~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd--~d~~ 286 (1150)
T 3hbl_A 209 PKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEF 286 (1150)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEE
T ss_pred CcEEEEEEEEeCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCeE
Confidence 89999999999999999999999999999999999999988999999999999999999999999999999999 3499
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||||||||+|++|+++|+++|+|++++++++++|.+++.. .+.+ ..|....++|
T Consensus 287 y~iEINpR~~g~~~vte~~tGvDlv~~~i~ia~G~~L~~~------------------------~~~~--~~q~~i~~~G 340 (1150)
T 3hbl_A 287 FFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGE------------------------EINM--PQQKDITTLG 340 (1150)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTST------------------------TTCC--CCGGGCCCCS
T ss_pred EEEEEeCCCCCCcceeehhcCCCHHHHHHHHHCCCCCCcc------------------------cccc--ccccccccce
Confidence 9999999999999999999999999999999999998631 0011 1344567789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
|+|+||||+|||..+|.|++|+|+.+.+|.+++|+++.+ +.+|..|+++|||++||||++|+||++|+++|.+||++++
T Consensus 341 ~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~ 420 (1150)
T 3hbl_A 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR 420 (1150)
T ss_dssp EEEEEEECSEEGGGTSEECCCCCCEEECCCCTTEEEEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCE
T ss_pred EEEEEEEeccCCccccCCCCceEEEEEcCCCCceeccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceE
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
|+| ++||++||+++|+||+|++|+++|+|||++
T Consensus 421 i~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 453 (1150)
T 3hbl_A 421 IRG-VKTNIPFLINVMKNKKFTSGDYTTKFIEET 453 (1150)
T ss_dssp EES-SCCSHHHHHHHHHCHHHHHSCCCTTHHHHC
T ss_pred EeC-ccCCHHHHHHHhCCHHHcCCCcccchhhCC
Confidence 999 999999999999999999999999999974
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-78 Score=766.60 Aligned_cols=466 Identities=18% Similarity=0.235 Sum_probs=379.2
Q ss_pred cccccccccCCCCCCcCCccccccCCC-----CCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSPG-----LNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLA 1668 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~g-----~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~r 1668 (2304)
.++.+++||+ | +|.|+....+ ....|||+++.++ +||+|+|++||+||++||+|+.+++|+.|
T Consensus 65 RERI~~LlD~--G----SF~El~~~~~~~~~~~~~dgVVtG~G~I------~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~R 132 (588)
T 3gf3_A 65 MQRINALIDP--G----TWCPLNSLFNPENNKFGTTNIVNGLGRV------DGKWVYIVASDNKKMAGAWVPGQAENLIR 132 (588)
T ss_dssp HHHHHHHSCT--T----CCEEESTTCCTTCCTTSSCSEEEEEEEE------TTEEEEEEEECTTSGGGCBCTTHHHHHHH
T ss_pred HHHHHHHcCC--C----ceEEccccccccccCCCCCcEEEEEEEE------CCEEEEEEEECCcccCCCCCHHHHHHHHH
Confidence 4666777887 6 4555544321 1246899999886 99999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCCCCCchhhhhh-hhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeE
Q 000086 1669 VTDLACAKKLPLIYLAANSGARIGVAEEVKA-CFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWV 1747 (2304)
Q Consensus 1669 a~e~A~~~~lP~I~l~~s~GARi~~~e~v~~-l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~ 1747 (2304)
++|+|.++|+|+|+|.+||||||+++|++++ ++ |++.+|... .++
T Consensus 133 a~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l~------------~~g~if~~~---~~l------------------- 178 (588)
T 3gf3_A 133 CSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRR------------GGGTPFFRN---SEL------------------- 178 (588)
T ss_dssp HHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTT------------STTHHHHHH---HHH-------------------
T ss_pred HHHHHHHcCCCEEEEEcCCCcCcccccccccchh------------hHHHHHHHH---HHH-------------------
Confidence 9999999999999999999999998899886 53 444454321 111
Q ss_pred EEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHH------
Q 000086 1748 VDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALN------ 1821 (2304)
Q Consensus 1748 i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~------ 1821 (2304)
|+ ..||+|++|+|+|+|||||.++++|++|+++++.|+|+||++|+
T Consensus 179 ------------------s~----------~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g 230 (588)
T 3gf3_A 179 ------------------NQ----------LGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG 230 (588)
T ss_dssp ------------------HH----------TTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------
T ss_pred ------------------hc----------CCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc
Confidence 11 12799999999999999999888999999999999999999996
Q ss_pred -----------HhhcccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCC---CC
Q 000086 1822 -----------KLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDP---PD 1886 (2304)
Q Consensus 1822 -----------~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~---~~ 1886 (2304)
+.++.+.|.|+++|||+++|. .||++|++++||.++++.+|+||||||+++.+.+|..++.+| ++
T Consensus 231 ~~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~ 310 (588)
T 3gf3_A 231 YIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDETGFFREVYQNDLGVIDGIKKYISYLPAYNLEFFRVDTPKAPQLPAE 310 (588)
T ss_dssp ------CHHHHHHHHHHHHTTCCCTTBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGCSSCCCCCSSCGG
T ss_pred cccccchhhhhhhhccccccChhhccchhhhccccccceEEeCCHHHHHHHHHHHHHhCCccCCCcCCCCCCCCCcCChH
Confidence 344444444899999999998 799999999999999999999999999988776665444332 23
Q ss_pred CCCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1887 RPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1887 r~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
+...++|. +|||+|++|++ |||+++|+|++++||+++|||+|||+|+|||||||+++...
T Consensus 311 ~L~~ivP~~~~~pyD~r~vI~~-----------i~D~~~f~E~~~~~g~~iV~G~arl~G~pVgvvan~~~~~~------ 373 (588)
T 3gf3_A 311 DLYSIIPMNQKRPYDIYEVIAR-----------LFDNSEFSEYKKGYGPEMVTGLAKVNGLLVGVIANVQGLLM------ 373 (588)
T ss_dssp GHHHHSCSSTTCCCCHHHHHHH-----------HSGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEEE------
T ss_pred HHHhhCCCCCCCCCCHHHHHHH-----------HcCCCcceeecccccccEEEEEEEECCEEEEEEEecCCccc------
Confidence 34467887 89999999997 79999999999999999999999999999999999876541
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
.+|.+.++ ..+.||+|+|++++|++|||++|++|+||||+|+||+||++|.++|+.|++++||++++++++++||+|+
T Consensus 374 -~~p~~~~~-~~~~~G~l~~~~a~Kaarfi~lcd~f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~it 451 (588)
T 3gf3_A 374 -NYPEYKQN-SVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLE 451 (588)
T ss_dssp -TCCTTSSS-CEEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEE
T ss_pred -ccccchhh-hhccCCCcCHHHHHHHHHHHHHhhhcCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 23455554 6678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCC
Q 000086 2044 YIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRT 2122 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~ 2122 (2304)
+|+ |+.+||+|++|+++ ++++++.+||||+|+++||+|||+++|+||++.. . .++.+..++
T Consensus 452 vI~--g~~~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEgaa~Il~~~~~~--~--------------~~~~~~~~~ 513 (588)
T 3gf3_A 452 ITI--RKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLV--K--------------AKKAGEDLQ 513 (588)
T ss_dssp EES--SEEETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHH--H--------------C-------C
T ss_pred EEc--CCccHHHHHHhcccccCCccceEEECCCceEEeCCHHHHHHHHhhhHHh--h--------------hhccccccc
Confidence 999 66799999999875 8888667999999999999999999999997611 0 111111112
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHH
Q 000086 2123 LAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2123 ~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~ 2187 (2304)
++ .+.. .++..+|.+.. +|+++++.|+||+||+|++||.++...|..-
T Consensus 514 ~~-~~~~---------------~~~~~~y~~~~-~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~ 561 (588)
T 3gf3_A 514 PI-IGKM---------------NDMIQMYTDKS-RPKYCTEKGMVDEIVDMTEVRPYIQAFTEAA 561 (588)
T ss_dssp HH-HHHH---------------HHHHHHHHHTT-SHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred hH-HHHH---------------HHHHHHHHHhC-CHHHHHhcCCCCeeeCHHHHHHHHHHHHHHH
Confidence 21 0111 23344555543 6888999999999999999999998776653
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-77 Score=766.05 Aligned_cols=462 Identities=18% Similarity=0.228 Sum_probs=391.5
Q ss_pred cccccccccCCCCCCcCCccccccCC-----CCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSP-----GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLA 1668 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~-----g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~r 1668 (2304)
.++.+++||+ | +|.|....- .....|||++..++ +||+|+|++||+||++||+|+.+++|+.|
T Consensus 64 reRI~~LlD~--g----sF~E~~~~y~~~~~~~~~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGs~g~~~~~Ki~r 131 (587)
T 1pix_A 64 LQRIEKLVEP--G----SWRPLNTLFNPQGNKNGSVAIVKGLGRV------NGKWCVVVASDNKKLAGAWVPGQAECLLR 131 (587)
T ss_dssp HHHHHHHSCT--T----CCEEESTTCCTTCCTTSCCSEEEEEEEE------TTEEEEEEEECTTTTTTEECTTHHHHHHH
T ss_pred HHHHHHHcCC--C----CceEhhhhcchhhhcCCCCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHHHH
Confidence 4666777877 5 344443211 22358899999886 99999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEE
Q 000086 1669 VTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVV 1748 (2304)
Q Consensus 1669 a~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i 1748 (2304)
++|+|.++|+|+|+|.+||||||| |++.+++. ..|++.+|... .+
T Consensus 132 ~~e~A~~~~lPvI~l~dSgGArlq--e~~~~l~~---------~~~~g~i~~~~---~~--------------------- 176 (587)
T 1pix_A 132 ASDTAKTLHVPLVYVLNCSGVKFD--EQEKVYPN---------RRGGGTPFFRN---AE--------------------- 176 (587)
T ss_dssp HHHHHHHHTCCEEEEECCCEECGG--GHHHHSSS---------TTSTTHHHHHH---HH---------------------
T ss_pred HHHHHHHcCCCEEEEEeCCCCCcc--ccchhccc---------cccHHHHHHHH---HH---------------------
Confidence 999999999999999999999999 66666531 13555555321 11
Q ss_pred EeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHH-----
Q 000086 1749 DSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNK----- 1822 (2304)
Q Consensus 1749 ~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~----- 1822 (2304)
.||+ .||+|++|+|+|+|||||. +++|++||+++ +.|+|+||++|++
T Consensus 177 ----------------ls~~----------giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~~ 229 (587)
T 1pix_A 177 ----------------LNQL----------GIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPKG 229 (587)
T ss_dssp ----------------HHHT----------TCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSSS
T ss_pred ----------------HhCC----------CCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhcccc
Confidence 1111 2699999999999999999 99999999886 8999999999999
Q ss_pred ------------hhcccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-
Q 000086 1823 ------------LLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP- 1888 (2304)
Q Consensus 1823 ------------~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~- 1888 (2304)
++|+++ ++++|||+++|. .||++|++++||.++++.+++||+|+|.++.+++|..++ |+++++
T Consensus 230 ~~d~~~A~el~~~tge~v--~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~ls~lp~~~~~~~~~~~~-~~p~~~~ 306 (587)
T 1pix_A 230 HVDLEYANEIADMVDRTG--KTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGMLPKYDPEFFRVDDP-KAPAFPA 306 (587)
T ss_dssp SCCHHHHHHHHHHHHTTC--CCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGBSSCC-CCCSSCG
T ss_pred ccchhHHHHHHHHhCCcc--ChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHHHhCCccCCCCCCCCCC-CCCCCCh
Confidence 999999 899999999998 699999999999999999999999999988777776554 555553
Q ss_pred ---CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccC
Q 000086 1889 ---VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPA 1962 (2304)
Q Consensus 1889 ---~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pa 1962 (2304)
+.++|. +|||+|++|++ |||.++|+|++++|++++|||+|||+|+|||||||+++.. |+
T Consensus 307 ~~l~~ivp~~~~~pyd~r~vI~~-----------l~D~~~f~E~~~~~~~~iV~G~arl~G~~VgvIan~~g~~----~~ 371 (587)
T 1pix_A 307 DDLYSMVPLNDKRAYDIYNVIAR-----------LFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLL----MN 371 (587)
T ss_dssp GGHHHHSCSSTTSCCCHHHHHHT-----------TSGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEE----TT
T ss_pred HHHhhhCCCCCCCCccHHHHHHH-----------hCCCceEEEeccccCCcEEEEEEEECCEEEEEEEeccCcc----cc
Confidence 456787 99999999997 8999999999999999999999999999999999987643 56
Q ss_pred CCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEE
Q 000086 1963 DPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1963 dpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i 2042 (2304)
||.. .++...+.+|+|+|++++|++|||++|++|++|||+|+||+||++|.++|+.|++++||++++++++++||+|
T Consensus 372 ~P~~---~~~~~~~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~i 448 (587)
T 1pix_A 372 YPEY---KAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQF 448 (587)
T ss_dssp CCTT---SCTTCCEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEE
T ss_pred cccc---ccccccccCCCcCHHHHHHHHHHHHHhhcCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6653 3334667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcCCchhhhhccc-ccCC--ccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhc
Q 000086 2043 VYIPMMAELRGGAWVVVDS-RINS--DHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKN 2119 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~-~i~~--d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~ 2119 (2304)
++|+ |+++||+|++|++ .+++ |+ +||||+|+++||+|||+++|+||++. +.++ +.|
T Consensus 449 tvI~--g~~~Ggg~~am~~~~~~~~~d~--~~a~p~A~~~Vm~pegaa~Il~r~~~--~~~~--------------~~g- 507 (587)
T 1pix_A 449 EITL--RKGTAAAHYVLGGPQGNDTNAF--SIGTAATEIAVMNGETAATAMYSRRL--AKDR--------------KAG- 507 (587)
T ss_dssp EEEC--SEEETTHHHHTTCTTCTTTEEE--EEECTTCEEESSCHHHHHHHHHHHHH--HHHH--------------HTT-
T ss_pred EEEc--CCCccHHHHHhcCcccCcccce--eeeccCCeEecCCHHHHHHHHHhhhh--hhhh--------------hcC-
Confidence 9999 7789999999886 5999 99 99999999999999999999998772 2221 111
Q ss_pred cCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHH
Q 000086 2120 NRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2120 ~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~ 2187 (2304)
+++++.+++.+ +++.+|.+ |.+|.+++++|+||+||+|++||++|+++|+..
T Consensus 508 -~~~~~~~~~~~--------------~~~~~y~~-~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~ 559 (587)
T 1pix_A 508 -KDLQPTIDKMN--------------NLIQAFYT-KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAA 559 (587)
T ss_dssp -CCCHHHHHHHH--------------HHHHHHHH-TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHH
T ss_pred -CChHHHHHHHH--------------HHHHHHHH-hCCHHHHHhcCCCccccCHHHHHHHHHHHHHHH
Confidence 33344443333 34667877 899999999999999999999999999999754
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-77 Score=753.96 Aligned_cols=447 Identities=22% Similarity=0.300 Sum_probs=379.6
Q ss_pred cccccccccCCCCCCcCCccccccCCCC-------CceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSPGL-------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1666 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~g~-------n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~ 1666 (2304)
.++.+++||+ |+ .|.|.....+. ...|||++..++ +||+|+|++||+||++||+|+.+++|+
T Consensus 77 ReRI~~LlD~--gS---~F~E~~~l~~~~~y~~~~~~dgVVtG~G~I------~Gr~v~V~a~D~tv~gGS~g~~~~~Ki 145 (555)
T 3u9r_B 77 RERINRLLDP--GS---PFLELSALAAHEVYGEEVAAAGIVAGIGRV------EGVECMIVGNDATVKGGTYYPLTVKKH 145 (555)
T ss_dssp HHHHHHHSCT--TC---CEEEECTTTTTTTSSSCCGGGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHH
T ss_pred HHHHHHHcCC--CC---CEEEEccccccccccccCCCCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHH
Confidence 4667778887 51 26665443332 257899999886 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceee
Q 000086 1667 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRW 1746 (2304)
Q Consensus 1667 ~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~ 1746 (2304)
.|++|+|.+.|+|+|+|.+||||||++++++++++ .+|+.+|... .++
T Consensus 146 ~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~-----------~~~~~i~~~~---~~l------------------ 193 (555)
T 3u9r_B 146 LRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDR-----------EHFGRIFFNQ---ANM------------------ 193 (555)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSST-----------TSTTHHHHHH---HHH------------------
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcceeeccc-----------ccHHHHHHHH---HHH------------------
Confidence 99999999999999999999999999889988763 3455555321 111
Q ss_pred EEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhc
Q 000086 1747 VVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLG 1825 (2304)
Q Consensus 1747 ~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG 1825 (2304)
|| ..+|+|++|+|+|+|||||.++++|++||+++ +.|+|+||++|++++|
T Consensus 194 -------------------s~----------~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aGP~vik~~~g 244 (555)
T 3u9r_B 194 -------------------SA----------RGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATG 244 (555)
T ss_dssp -------------------HH----------TTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSCHHHHHHHHC
T ss_pred -------------------hc----------CCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEccHHHHHHHhc
Confidence 11 12699999999999999999999999999875 7999999999999999
Q ss_pred ccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCC---CCCCCCCccccC---CCCC
Q 000086 1826 REVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPL---DPPDRPVEYLPE---NSCD 1898 (2304)
Q Consensus 1826 ~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~---d~~~r~~~~~P~---~~yD 1898 (2304)
+++ +.++|||+++|. .||++|++++||.+++..+++||+|||.++.+++|..++. +++++...++|. +|||
T Consensus 245 e~~--~~e~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~~l~~ivP~~~~~pyd 322 (555)
T 3u9r_B 245 EVV--SAEELGGADVHCKVSGVADHYAEDDDHALAIARRCVANLNWRKQGQLQCRAPRAPLYPAEELYGVIPADSKQPYD 322 (555)
T ss_dssp CCC--CHHHHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHTSCCCCCCCCCCCCCCCCSSCGGGHHHHSCSSTTSCCC
T ss_pred Ccc--ChhhccchhhhhhccCceeEEeCCHHHHHHHHHHHHHhCCccCCCCCCCCCCCCCCCChHHHHhhCCCCccCCcc
Confidence 998 889999999997 7999999999999999999999999999887776654433 334445667887 8999
Q ss_pred hHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCC
Q 000086 1899 PRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAG 1978 (2304)
Q Consensus 1899 ~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~g 1978 (2304)
+|++|++ ++|.++|+|+++.||+++|||+|||+|+||||||| .
T Consensus 323 ~r~~i~~-----------i~D~~~f~E~~~~~g~~iV~G~ari~G~~Vgvian--------------------------~ 365 (555)
T 3u9r_B 323 VREVIAR-----------LVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILAN--------------------------N 365 (555)
T ss_dssp THHHHTT-----------TSGGGBCEEESTTSSTTEEEEEEEETTEEEEEEEE--------------------------C
T ss_pred HHHHHhh-----------hcCCceeEEeeccCCCcEEEEEEEECCEEEEEEEe--------------------------C
Confidence 9999997 79999999999999999999999999999999999 3
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhh
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2058 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv 2058 (2304)
|+|++++++|++|||++|++|+||||+|+||+||++|.++|+.|++++||++++++++++||+|++|++ +.++||+|++
T Consensus 366 G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g-~~~Ggg~~am 444 (555)
T 3u9r_B 366 GILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIG-GSFGAGNYGM 444 (555)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEE-EEETTHHHHT
T ss_pred CccCHHHHHHHHHHHHHHhcCCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeC-CccchhhHhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999994 4444456666
Q ss_pred cccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH-H
Q 000086 2059 VDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR-E 2137 (2304)
Q Consensus 2059 ~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r-e 2137 (2304)
+++.+++|+ +||||+|+++||+|||++.|.|..+ ++++++.++++++++.+++++++.++ +
T Consensus 445 ~~~~~~~d~--~~a~p~A~i~Vmgpegaa~il~~~~----------------~~~~~~~g~~~~~~~~~~~~~~~~~~y~ 506 (555)
T 3u9r_B 445 CGRAYDPRF--LWMWPNARIGVMGGEQAAGVLAQVK----------------REQAERAGQQLGVEEEAKIKAPILEQYE 506 (555)
T ss_dssp TCGGGCCSE--EEECTTCEEESSCHHHHHHHHHHHH----------------HHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCe--EEEcCCcEEEcCCHHHHHHHHHHHH----------------HHHHHhccCCCCcchHHHHHHHHHHHHH
Confidence 666799999 9999999999999999999988532 01234444566777777777766554 4
Q ss_pred HhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHH
Q 000086 2138 KQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2138 ~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r 2186 (2304)
++.. |+.+++.|+||+||+|++||+++...|+-
T Consensus 507 ~~~~----------------p~~aa~r~~vD~vIdP~~TR~~l~~~l~~ 539 (555)
T 3u9r_B 507 HQGH----------------PYYSSARLWDDGVIDPAQTREVLALALSA 539 (555)
T ss_dssp HHHS----------------HHHHHHTTSSSCBCCGGGHHHHHHHHHHH
T ss_pred HhCC----------------HHHHhhccccCcccChHHHHHHHHHHHHH
Confidence 4444 55688999999999999999999988864
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-76 Score=752.76 Aligned_cols=417 Identities=27% Similarity=0.406 Sum_probs=373.5
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|||++..++ +||+|+|++|||||++||||+++++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 78 ~dgvvtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGGaRmq--eg~~sl~~ 149 (522)
T 1x0u_A 78 GDGVVTGWGKV------DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQ--EGALSLEG 149 (522)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--HHHHHHHH
Confidence 57799999876 99999999999999999999999999999999999999999999999999999 88999987
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
|+ .+|. .+.+.||. ||+
T Consensus 150 ~~------------~i~~----------------------------------------~~~~~s~~-----------iP~ 166 (522)
T 1x0u_A 150 YG------------AVFK----------------------------------------MNVMASGV-----------IPQ 166 (522)
T ss_dssp HH------------HHHH----------------------------------------HHHHHTTT-----------SCE
T ss_pred HH------------HHHH----------------------------------------HHHHhCCC-----------CcE
Confidence 75 1111 11222333 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-c-ceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-Q-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGIS 1859 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~-~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~ 1859 (2304)
|+++||||+||+||.++|||++||+++ + .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++
T Consensus 167 Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP~vI~~~~ge~~--~~e~lggae~~~~~~G~~d~vv~~~~~~~~ 244 (522)
T 1x0u_A 167 ITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEV--SFQDLGGAVVHATKSGVVHFMVDSEQEAIN 244 (522)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCHHHHHHTTCCCC--CHHHHHBHHHHHHTTCCCSEEESCHHHHHH
T ss_pred EEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCHHHHHHHhCCcC--ChhhcchHHHHhhcCceeEEEeCCHHHHHH
Confidence 999999999999999999999999999 8 999999999999999999 678999999998 79999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCC
Q 000086 1860 AILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWAR 1932 (2304)
Q Consensus 1860 ~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~ 1932 (2304)
.+++||+|+|.++.+.+|..++.|++++. ..++|. .+||+|++|+. |||++||+|+.++|++
T Consensus 245 ~~~~ll~~lp~~~~~~~~~~~~~d~p~~~~~~l~~v~p~~~~~~~~~r~~I~~-----------l~D~gsF~E~~~~~~~ 313 (522)
T 1x0u_A 245 LTKRLLSYLPSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYK-----------IVDNGEFLEVHKHWAQ 313 (522)
T ss_dssp HHHHHHHHSCSSTTSCCCCCCCCCCSCCCSSSHHHHSCSSSSCCCCHHHHHHH-----------HSGGGCCEEETTTSCT
T ss_pred HHHHHHHhccccCccCCCCCCCCCCcccCchhHhhhccCCCCCCCCHHHHHHH-----------hCCCCceEEecCCCcc
Confidence 99999999999888888877777777764 346776 89999999997 8999999999999999
Q ss_pred eEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCC
Q 000086 1933 TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF 2012 (2304)
Q Consensus 1933 ~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf 2012 (2304)
++|||+|||+|+||||+|+|+++. ||+|++++++|++|||++|+++++|||+|+||+||
T Consensus 314 ~vVtG~ari~G~~V~via~d~~~~---------------------gG~l~~~~~~K~ar~i~~a~~~~~Plv~l~ds~G~ 372 (522)
T 1x0u_A 314 NIIVGFARIAGNVVGIVANNPEEF---------------------GGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGY 372 (522)
T ss_dssp TEEEEEEEETTEEEEEEEECTTTG---------------------GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCB
T ss_pred cEEEEEEEECCEEEEEEEECCCcc---------------------CCCcCHHHHHHHHHHHHHHhhCCCCEEEEecCCCC
Confidence 999999999999999999976543 89999999999999999999999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhccc-ccCCccceeecccCcEEEeeCccchhhhhc
Q 000086 2013 SGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKF 2091 (2304)
Q Consensus 2013 ~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~-~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~ 2091 (2304)
++|.++|+.|+++++|+++++++++++|+|++|+ |+++||+|.++++ .+++|+ +||||+|+++||+|||+++|+|
T Consensus 373 ~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~--g~~~GGg~~~~a~~a~~~D~--v~a~p~A~i~v~gpegaa~Il~ 448 (522)
T 1x0u_A 373 VPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIV--RKSYGGAHIAMSIKSLGADL--VYAWPTAEIAVTGPEGAVRILY 448 (522)
T ss_dssp CCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTCCGGGTCSE--EEECTTCEEESSCHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcccHHHHHhcccccCCCE--EEEeCCCEEEecCHHHHHHHHh
Confidence 9999999999999999999999999999999999 7889999988887 489999 9999999999999999999999
Q ss_pred chhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceec
Q 000086 2092 RTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVV 2171 (2304)
Q Consensus 2092 r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi 2171 (2304)
|++ + ++ . ++.+++ .+++..+|.+.|++|.+++++|+||+||
T Consensus 449 r~~--i---~~--------------~------~d~~~~--------------~~~l~~~y~~~~~~~~~~~~~G~iD~II 489 (522)
T 1x0u_A 449 RKE--I---QQ--------------A------SNPDDV--------------LKQRIAEYRKLFANPYWAAEKGLVDDVI 489 (522)
T ss_dssp SSS--S---SS--------------S------SSSSSS--------------SHHHHHHHHHHHSSSHHHHHTTSSSEEC
T ss_pred hhh--h---hc--------------c------cCHHHH--------------HHHHHHHHHHhcCCHHHHHhcCCCcEeE
Confidence 975 1 10 0 000011 1235667889999999999999999999
Q ss_pred CccchHHHHHHHHHHH
Q 000086 2172 DWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2172 ~~~~tR~~~~~~L~r~ 2187 (2304)
+|+++|++|++.|+..
T Consensus 490 ~p~~tR~~L~~~L~~~ 505 (522)
T 1x0u_A 490 EPKDTRRVIVAGLEML 505 (522)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999753
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-74 Score=750.37 Aligned_cols=533 Identities=56% Similarity=0.983 Sum_probs=476.4
Q ss_pred hhcccccCCCCCCCcccCCCcCCCccchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEE
Q 000086 5 QRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLV 84 (2304)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v 84 (2304)
.|..++-|.+.+.+.- .....+++++|+.++||++|++||||+|+|+.|+++++++|++||+|++.+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v 83 (554)
T 1w96_A 11 ERHTELPGHFIGLNTV-------DKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFV 83 (554)
T ss_dssp HHHHHSCGGGCCSSBG-------GGSCCCHHHHHHHHTTCCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEE
T ss_pred hhcccCCCCccccccc-------cccccccHHHHHhhcCCcccccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEE
Confidence 3555666665543311 111227899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCC--CeEECC
Q 000086 85 AMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKG--IIFLGP 162 (2304)
Q Consensus 85 ~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~G--I~fiGP 162 (2304)
+++++.|.++++++.++||+++.+|+..+.++|.|++.|+++|+++++|+|+||||+.+|++.++..|++.| +.++||
T Consensus 84 ~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp 163 (554)
T 1w96_A 84 AMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGP 163 (554)
T ss_dssp EEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSC
T ss_pred EEecccccccCChhhhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCC
Confidence 999988888899999999999999987778899999999999999999999999999999999999999999 999999
Q ss_pred CHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCC---ccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 163 PATSMAALGDKIGSSLIAQAANVPTLPWSGSH---VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 163 s~eam~~lgDK~~sr~laq~aGVPtpp~s~~~---~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
++++++.++||..++++++++|||+|+|...+ ++.+....+..+|.+.|.+.++.+.+++.++++++|||+||||..
T Consensus 164 ~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~ 243 (554)
T 1w96_A 164 PGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASE 243 (554)
T ss_dssp CHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETT
T ss_pred CHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999999999999987520 001111223346777777777899999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCC
Q 000086 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2304)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~ 319 (2304)
|+||+|+++|++.+|+..+++.+..+..+.+++||+|+++++|++|++++|++|+++++++++|++|++|+|.++.+|++
T Consensus 244 g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~~P~~ 323 (554)
T 1w96_A 244 GGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVT 323 (554)
T ss_dssp CCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCC
T ss_pred CCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeeeCCCc
Confidence 99999999999999999999999887777899999999988999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 320 ~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
.++++..++|.+.+.++++++||+|++++||++++.+|++||||+|||+|++|+++++++|+|++++++++++|.+++.+
T Consensus 324 ~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~~ 403 (554)
T 1w96_A 324 IAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRI 403 (554)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCcccc
Confidence 88999999999999999999999999999999974478899999999999999999999999999999999999999888
Q ss_pred hhhhhcccccCCCcccccccccccccCCCc------cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcE
Q 000086 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDF------DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473 (2304)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~------~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V 473 (2304)
|+++.+||.+|.+ ...|+|.+ ..+..+.+.||++++|+++|+|.++|.|++|+|..+.++..++|
T Consensus 404 ~~~~~~~g~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~~~~~~~~~~v 474 (554)
T 1w96_A 404 SDIRTLYGMNPHS---------ASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNV 474 (554)
T ss_dssp HHHHHHTTCCTTC---------CCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSE
T ss_pred cchhhhccCCccc---------cccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEeEEecCCCCCE
Confidence 8899999998876 66677730 01224567899999999999999999999999999988888899
Q ss_pred EEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 474 ~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
|+++++..|+.|+++||+++|+|+++|+|+++|+++|.++|++++|+|.++||++||++||++|+|++|+++|+|||++|
T Consensus 475 ~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~g~~~~~i~~~~~~~~~~~f~~~~~~t~~~~~~~ 554 (554)
T 1w96_A 475 WGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 554 (554)
T ss_dssp EEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC----CCHHHHHHHTSHHHHTTCCCTTHHHHHC
T ss_pred EEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEEeeccCCHHHHHHHhcCHhhhcCCccchHhhhhC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999864
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-70 Score=695.52 Aligned_cols=437 Identities=32% Similarity=0.553 Sum_probs=410.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|++|++++++++++|++++ +++ ++.+.++++.++||+++.+++.+..++|.|.+.|+++
T Consensus 5 ~~~kiLI~g~g~~a~~i~~aa~~~G~~~v---------~v~--~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~ 73 (446)
T 3ouz_A 5 EIKSILIANRGEIALRALRTIKEMGKKAI---------CVY--SEADKDALYLKYADASICIGKARSSESYLNIPAIIAA 73 (446)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCEEE---------EEE--EGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCEEE---------EEE--cCcccccchHhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999884 344 4666889999999999999887888899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+||||+.+|++.+++.|++.|+.++||++++++.++||..++++++++|||+|||..
T Consensus 74 ~~~~~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~-------------- 139 (446)
T 3ouz_A 74 AEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSD-------------- 139 (446)
T ss_dssp HHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS--------------
T ss_pred HHHhCcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~re 282 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+.. ..+++||+|+++++|
T Consensus 140 -------~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e 212 (446)
T 3ouz_A 140 -------GALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRH 212 (446)
T ss_dssp -------SSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEE
T ss_pred -------cCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcE
Confidence 016889999999999999999999999999999999999999999998876532 568999999999899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|++++|++|++++++.++|+++++|+|.++.+|++.++++..++|.+.+.++++++||+|++++||++++ +|++||+
T Consensus 213 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~~i 291 (446)
T 3ouz_A 213 IEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYFI 291 (446)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEE
T ss_pred EEEEEEEcCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999994 5789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||+|++|+++++++|+|++++++++++|.|++. +..+.+.||++
T Consensus 292 EiNpR~~g~~~~~~~~~G~dl~~~~~~~~~G~~l~~---------------------------------~~~~~~~g~ai 338 (446)
T 3ouz_A 292 EMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPS---------------------------------QESIKLNGHSI 338 (446)
T ss_dssp EEESSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCC---------------------------------GGGCCCCSEEE
T ss_pred EeECCCCCcceeeeeeeCCCHHHHHHHHHCCCCCCc---------------------------------CCCCCcceEEE
Confidence 999999999999999999999999999999998851 12345679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2304)
++||++||| ..|.|++|+|+.+.+|..++|+++..+.+|..|+++|||++|+||++|+||++|+++|.+||+++.|+|
T Consensus 339 ~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr~~~~~~~G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g- 416 (446)
T 3ouz_A 339 ECRITAEDS-KTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISG- 416 (446)
T ss_dssp EEEEESBCT-TTCCBCCEECSEEECCCSTTEEEEECCCTTCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCEEES-
T ss_pred EEEeeccCC-CccCCCCcEEeEEecCCCCCEEEEcccccCCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCEEeC-
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCccccccccccchhhhh
Q 000086 523 IRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2304)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2304)
++||++||+++|++|+|++|+++|+|||+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
T 3ouz_A 417 IKTTKDFHLSMMENPDFINNNYDTNYLAR 445 (446)
T ss_dssp SCCTHHHHHHHHTCHHHHTTCCCTTHHHH
T ss_pred ccCCHHHHHHHhCChhhccCCcccccccc
Confidence 99999999999999999999999999996
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-67 Score=724.17 Aligned_cols=442 Identities=32% Similarity=0.539 Sum_probs=353.5
Q ss_pred CCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHH
Q 000086 43 GGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQL 122 (2304)
Q Consensus 43 ~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~ 122 (2304)
.+++||+||||+|+|++|++++++||++|++++ +++++.+.++.+.++||+++.+++.+..++|.|.+.
T Consensus 26 ~~~~m~kkILI~grGeia~~iiraar~lGi~vV-----------aV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~ 94 (1236)
T 3va7_A 26 QKKKPFETVLIANRGEIAVRIMKTLKRMGIKSV-----------AVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDK 94 (1236)
T ss_dssp --CCSCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHH
T ss_pred CccCCCCEEEEEcCCHHHHHHHHHHHHCCCEEE-----------EEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHH
Confidence 357899999999999999999999999999885 445577789999999999999988788889999999
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCc
Q 000086 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESC 202 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~ 202 (2304)
|+++|+++++|+|+||||+++|+..+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 95 Il~~a~~~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~---------- 164 (1236)
T 3va7_A 95 IINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSG---------- 164 (1236)
T ss_dssp HHHHHHHTTCSEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC-------------
T ss_pred HHHHHHHhCCCEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeE----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecc
Q 000086 203 LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVAS 278 (2304)
Q Consensus 203 ~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~ 278 (2304)
.+.+.+++.++++++||||||||..|+||+||++|+|.+|+.++++.+..+. .+.+++||||++
T Consensus 165 ------------~v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~ 232 (1236)
T 3va7_A 165 ------------LIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN 232 (1236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------ecCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC
Confidence 1678889999999999999999999999999999999999999999876543 346899999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
+++|++|++++|++|++++++.+||++|++|+|+++++|++.+++++.++|.+.+.++++++||+|+++|||++++++++
T Consensus 233 G~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~ 312 (1236)
T 3va7_A 233 NARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDE 312 (1236)
T ss_dssp CCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred CCeEEEEEEEecCCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCc
Confidence 98999999999999999999999999999999999999998899999999999999999999999999999999965589
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2304)
+||||||||+|++|+++|+++|+|++++++++++|.+++. .+....++
T Consensus 313 ~y~iEINpRl~g~~~~te~vtGvDlv~~~l~~a~G~~l~~--------------------------------~~~~~~~~ 360 (1236)
T 3va7_A 313 FYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPDF--------------------------------DNTKIEVS 360 (1236)
T ss_dssp EEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCG--------------------------------GGCCCCCC
T ss_pred EEEEEEECCCCCccHHHHHHHCCCHHHHHHHHHCCCCCCC--------------------------------cccccccc
Confidence 9999999999999999999999999999999999998752 12234567
Q ss_pred eEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 439 GHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 439 ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
||+|++|+|+|||.++|.|++|+|..+.++.+ ++++..+.+|+.|+++|||++|+||++|+||++|+++|++||+++.
T Consensus 361 g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g--vrvd~~v~~G~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~ 438 (1236)
T 3va7_A 361 GASIEARLYAENPVKDFRPSPGQLTSVSFPSW--ARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETA 438 (1236)
T ss_dssp SEEEEEEEESEETTTTTEECCEECCEEECCTT--SEEEECCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEEecCCcccccCCCCceEEEEEcCCc--cEecccccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEE
Confidence 99999999999999999999999999988764 8888889999999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
|+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 439 i~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1236)
T 3va7_A 439 VYG-CITNIDYLRSIASSKMFKEAKVATKVLDSF 471 (1236)
T ss_dssp EES-SCCSHHHHHHHHHCHHHHHTCCCTTGGGGC
T ss_pred EeC-cccCHHHHHHHhCCHHHhCCCCcchhhhhc
Confidence 999 999999999999999999999999999986
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-65 Score=704.09 Aligned_cols=451 Identities=33% Similarity=0.555 Sum_probs=352.2
Q ss_pred hcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-------CC
Q 000086 41 SLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-------TN 113 (2304)
Q Consensus 41 ~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-------~~ 113 (2304)
++|| ||+||||||||++|++++|+|+++|++++ ++ +++.+..+.+.++||+++.+|.. ..
T Consensus 9 ~~~~--~~~~~lianrGeia~riiraa~elGi~vv---------av--~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~ 75 (1165)
T 2qf7_A 9 HHGG--PISKILVANRSEIAIRVFRAANELGIKTV---------AI--WAEEDKLALHRFKADESYQVGRGPHLARDLGP 75 (1165)
T ss_dssp ---C--CCCEEEECCCHHHHHHHHHHHHHTTCEEE---------EE--ECGGGTTCHHHHSSSSEEECSCSTTSSSCCCT
T ss_pred ccCC--cceEEEEcCCcHHHHHHHHHHHHcCCEEE---------EE--ECCCcccchhHHhCCEEEEcCCcccccccCCc
Confidence 3444 68999999999999999999999999884 44 44666778999999999999874 45
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCC
Q 000086 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2304)
Q Consensus 114 ~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~ 193 (2304)
..+|+|++.|+++|+++++|+|+||||+++|++.+++.|++.|++|+||++++++.++||..++++++++|||+|||..
T Consensus 76 ~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~- 154 (1165)
T 2qf7_A 76 IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATE- 154 (1165)
T ss_dssp THHHHCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC-----
T ss_pred cccccCHHHHHHHHHHhCCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeC-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCC
Q 000086 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGS 269 (2304)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~ 269 (2304)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..++ .+.
T Consensus 155 --------------------~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~ 214 (1165)
T 2qf7_A 155 --------------------PLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKD 214 (1165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------cCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCC
Confidence 01567888888999999999999999999999999999999999999876553 246
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEE
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVE 349 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVE 349 (2304)
+++||+|+++++|++|++++|++|+++++++|+|++||+|+|.++.+|++.++++..++|.+.+.++++++||+|++++|
T Consensus 215 ~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vE 294 (1165)
T 2qf7_A 215 EVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVE 294 (1165)
T ss_dssp -----CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEeccCCcEEEEEEEEcCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEE
Confidence 89999999988999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000086 350 YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2304)
|++++++|++||||+|||+|++|+++++++|+|++++++++++|.+++.++ +.+
T Consensus 295 f~vd~~dg~~~~iEiNpR~~~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~------------------------~g~-- 348 (1165)
T 2qf7_A 295 YLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQ------------------------SGV-- 348 (1165)
T ss_dssp EEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSGG------------------------GTC--
T ss_pred EEEECCCCCEEEEEEEcCCCCCchhhhhhhCCCHHHHHHHHHcCCCccccc------------------------ccc--
Confidence 999954788999999999999999999999999999999999999886310 001
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee-eeCCcccccCCCccEEEEEEeCCHHHHHH
Q 000086 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV-KSGGGIHEFSDSQFGHVFAFGESRALAIA 508 (2304)
Q Consensus 430 ~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v-~~G~~i~~~~Ds~~g~via~G~~reeA~~ 508 (2304)
..+.....+||+++|||++|||..+|.|++|+|..+..+..++++++.++ .+|..|+++|||++|+|+++|+|+++|++
T Consensus 349 p~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~~~~~~gvrvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~ 428 (1165)
T 2qf7_A 349 PNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAIS 428 (1165)
T ss_dssp CCGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEECCCCTTEEEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHH
T ss_pred ccccccccCcEEEEEEEEecCCccCcCCCCcEEEEEecCCCCceEeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHH
Confidence 01223456799999999999999999999999998888877899988766 57999999999999999999999999999
Q ss_pred HHHHhhcceEEecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 509 NMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 509 ~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
+|.++|++++|+| ++|||+||+++|+||+|++|+++|+|||++
T Consensus 429 ~~~~al~~i~i~G-~~tni~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1165)
T 2qf7_A 429 RMDRALREFRIRG-VATNLTFLEAIIGHPKFRDNSYTTRFIDTT 471 (1165)
T ss_dssp HHHHHHHHCEEES-SCCSHHHHHHHHTSHHHHTTCCCTTTTTTC
T ss_pred HHHHHhhcEEEec-ccCCHHHHHHHhcCHHhhcCCccchhhhcC
Confidence 9999999999999 999999999999999999999999999986
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-62 Score=617.25 Aligned_cols=442 Identities=33% Similarity=0.525 Sum_probs=402.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||||+|+|+.|++++++++++|++++ ++.. +.+.++++.++||+++.+|+.....+|.|.+.|+++|
T Consensus 1 ~k~ilI~g~g~~~~~i~~a~~~~G~~vv---------~v~~--~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~ 69 (451)
T 2vpq_A 1 MKKVLIANRGEIAVRIIRACRDLGIQTV---------AIYS--EGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIA 69 (451)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHTTCEEE---------EEEE--GGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CceEEEeCCCHHHHHHHHHHHHcCCEEE---------EEec--ccccccchhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 5899999999999999999999999884 3333 5556788999999999987766678999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
++.++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~--------------- 134 (451)
T 2vpq_A 70 TSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSD--------------- 134 (451)
T ss_dssp HHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS---------------
T ss_pred HHcCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcc---------------
Confidence 99999999999999999988889999999999999999999999999999999999999999761
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~rei 283 (2304)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+. ...+++||+|+++++|+
T Consensus 135 ------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~ 208 (451)
T 2vpq_A 135 ------GLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHI 208 (451)
T ss_dssp ------SCBSCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEE
T ss_pred ------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEE
Confidence 01678999999999999999999999999999999999999999998876431 24689999999988899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+|++++|++|+++.+..++|+++++|++..+.+|++.++++..++|.+.+.++++++||.|++++||++++++|++||+|
T Consensus 209 ~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viE 288 (451)
T 2vpq_A 209 EIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFME 288 (451)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEE
Confidence 99999999899999999999999999999999999888999999999999999999999999999999984478899999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||+|+++++++.++|+|++++++++++|.+++.. +......+|++.
T Consensus 289 iN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~--------------------------------~~~~~~~~~a~~ 336 (451)
T 2vpq_A 289 MNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLPYK--------------------------------QEDIKLTGHAIE 336 (451)
T ss_dssp EECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCSCC--------------------------------GGGCCCCSEEEE
T ss_pred eeCCCCCceehhhHHhCCCHHHHHHHHHCCCCCCCc--------------------------------ccccCcCceEee
Confidence 999999999999999999999999999999987521 112334589999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000086 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2304)
+|+++++|..+|.|.+|.+..+.++..++|+++..+.+|..+++++++++|+|+++|+|+++|++++.++++++.|+| +
T Consensus 337 ~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g-~ 415 (451)
T 2vpq_A 337 FRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLG-I 415 (451)
T ss_dssp EEEESEEGGGTTEECCSBCSEEECCCSTTEEEECCCCTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCEEES-S
T ss_pred eEeeeeccccccCCCCCEEeEEECCCCCCcccccccccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccEEeC-c
Confidence 999999999899999999998888777899888888999999889999999999999999999999999999999999 8
Q ss_pred ccCHHHHHHhcCccccccccccchhhhhhhh
Q 000086 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2304)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2304)
.||++||+++|.+|+|++|+++|+|||+++.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (451)
T 2vpq_A 416 DTTIPFHIKLLNNDIFRSGKFNTNFLEQNSI 446 (451)
T ss_dssp CCSHHHHHHHHTCHHHHHTCCCTTTTTTSCT
T ss_pred CCCHHHHHHHhCCHhhhcCCCccHHHhhhhh
Confidence 9999999999999999999999999998754
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-61 Score=616.18 Aligned_cols=446 Identities=32% Similarity=0.532 Sum_probs=401.3
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIV 124 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~-~~~~sY~dvd~Ii 124 (2304)
+||+||||+|+|+.+++++++++++|++++ ++.. +.+..+++.++||+++.+|.. ....+|.|.+.|+
T Consensus 4 ~~~k~ILI~g~g~~~~~i~~a~~~~G~~vv---------~v~~--~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~ 72 (461)
T 2dzd_A 4 RRIRKVLVANRGEIAIRVFRACTELGIRTV---------AIYS--KEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGII 72 (461)
T ss_dssp CCCSEEEECSCHHHHHHHHHHHHHHTCEEE---------EEEC--GGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHH
T ss_pred CcCcEEEEECCcHHHHHHHHHHHHcCCEEE---------EEEC--CcccccchhhhCCEEEEcCCCCCccccccCHHHHH
Confidence 578999999999999999999999999884 3333 555667889999999999863 3345789999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccc
Q 000086 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2304)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~ 204 (2304)
++|+++++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 73 ~~~~~~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~------------ 140 (461)
T 2dzd_A 73 EIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSD------------ 140 (461)
T ss_dssp HHHHHTTCCEEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCS------------
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcc------------
Confidence 99999999999999999999988899999999999999999999999999999999999999999862
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~ 280 (2304)
..+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+ ....+++||+|++|+
T Consensus 141 ---------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 211 (461)
T 2dzd_A 141 ---------GPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211 (461)
T ss_dssp ---------SCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC
T ss_pred ---------cCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 0167899999999999999999999999999999999999999999887643 224689999999988
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|++|++++|.+|+++.+++++|+.+++|++.++.+|++.++++..++|.+.+.++++++||.|.+++||+++ ++++|
T Consensus 212 ~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~--~~~~~ 289 (461)
T 2dzd_A 212 KHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVS--GDEFY 289 (461)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEEE
T ss_pred eEEEEEEEEcCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEe--CCCEE
Confidence 9999999999999999999999999999999999999977999999999999999999999999999999999 48899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|||+|||+|++|+++++++|+|++++++++++|.+++.++ +.|. .+.....+||
T Consensus 290 viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~------------------------~~~~--~~~~~~~~g~ 343 (461)
T 2dzd_A 290 FIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHE------------------------VGIP--KQEDIRINGY 343 (461)
T ss_dssp EEEEESSCCGGGHHHHHHHCCCHHHHHHHHHTTCCTTSTT------------------------TCCC--CGGGCCCCSE
T ss_pred EEEEECCCCCceeeEEeecCCCHHHHHHHHHcCCCccccc------------------------cccc--ccccccccee
Confidence 9999999999999999999999999999999999986421 1111 1222456799
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
++++|+++++|..+|.|++|.|+.+..+..++++.+.. +.+|++|+++||+++|+|+++|+|+++|++++++++++++|
T Consensus 344 ~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~ 423 (461)
T 2dzd_A 344 AIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRI 423 (461)
T ss_dssp EEEEEEESEEGGGTTEECCEECSEEECCCCTTEEEEESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE
T ss_pred EEEeeecccCCccCccCCCCeeeEEecCCCCCeEeecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEE
Confidence 99999999999999999999998888877788987654 47999999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCccccccccccchhhhhh
Q 000086 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2304)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2304)
+| ++|||.|+.+++.+|+|++|+++|+|||++
T Consensus 424 ~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
T 2dzd_A 424 RG-IKTNIPFLENVVQHPKFLSGEYDTSFIDTT 455 (461)
T ss_dssp ES-SCCSHHHHHHHHHSHHHHTSCCCTTHHHHC
T ss_pred eC-CcCCHHHHHHHhCChhhhCCCccchhhhcc
Confidence 99 799999999999999999999999999986
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-61 Score=613.96 Aligned_cols=438 Identities=29% Similarity=0.509 Sum_probs=401.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|++||||+|+|+.+++++++++++|++++ ++.++.+.++++.++||+++.+++. ...+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~~~p~-~~~~~~d~~~l~~~ 68 (451)
T 1ulz_A 1 MVNKVLVANRGEIAVRIIRACKELGIPTV-----------AIYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINL 68 (451)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCEE-----------EEECGGGTTCHHHHHSSEEEECCSS-TTHHHHCHHHHHHH
T ss_pred CCceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhcccchhhhCcEEEEcCCC-cccccCCHHHHHHH
Confidence 68999999999999999999999999985 3334556778899999999998654 56689999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCC--CCCccCCCCCccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLV 204 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s--~~~~~~~~~~~~~ 204 (2304)
|++.++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|+|. .
T Consensus 69 ~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~------------ 136 (451)
T 1ulz_A 69 ALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGV------------ 136 (451)
T ss_dssp HHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSS------------
T ss_pred HHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccc------------
Confidence 99999999999999999998888999999999999999999999999999999999999999986 3
Q ss_pred ccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccc
Q 000086 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQS 280 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~ 280 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+ ....+++||+|++|+
T Consensus 137 -----------~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 1ulz_A 137 -----------LKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP 205 (451)
T ss_dssp -----------CCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC
T ss_pred -----------cCCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC
Confidence 67889999999999999999999999999999999999999999887643 124689999999988
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|++|++++|.+|+++.+..|+|+++++|++.++.+|++.++++..+++.+.+.++++++||+|++++||++++ +|++|
T Consensus 206 ~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~ 284 (451)
T 1ulz_A 206 KHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLY 284 (451)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEE
T ss_pred eEEEEEEEEcCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCCEE
Confidence 99999999998899999999999999999999999999878999999999999999999999999999999984 67899
Q ss_pred EEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000086 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2304)
Q Consensus 361 fLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gh 440 (2304)
|+|+|||+|+++++++.++|+|++++++++++|.|++.. +..+...+|
T Consensus 285 viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~--------------------------------~~~~~~~~~ 332 (451)
T 1ulz_A 285 FIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIK--------------------------------QEDVKFNGY 332 (451)
T ss_dssp EEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCCC--------------------------------GGGCCCCSE
T ss_pred EEEeeCCCCccchHHHHHhCCCHHHHHHHHHcCCCCCCc--------------------------------cccCCCceE
Confidence 999999999999999999999999999999999988521 112234579
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 441 ai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
++++++++++|..+|.|.+|++..+.++..++++++..+.+|..+++++|+++|||+++|+|+++|++++.++++++.|+
T Consensus 333 a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~ 412 (451)
T 1ulz_A 333 AIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEIT 412 (451)
T ss_dssp EEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEC
T ss_pred EEEEeccccCcccCcCCCCceeceEECCCCCCcccccCccCCCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEEe
Confidence 99999999999889999999999988877788988888899999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
| ++|||.||+++|.+|+|++|+++|+|||+++
T Consensus 413 g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (451)
T 1ulz_A 413 G-VKTTIPLLINIMKEKDFKAGKFTTKYLEEHP 444 (451)
T ss_dssp S-SCCSHHHHHHHHHCHHHHHTCCCTTTTTTCG
T ss_pred C-ccCCHHHHHHHhCCHHHhcCCCcchhhhhhH
Confidence 9 9999999999999999999999999999874
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-61 Score=610.35 Aligned_cols=439 Identities=33% Similarity=0.579 Sum_probs=400.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||+|+|+.+++++++++++|++++ ++.+ +.+.++++.++||+++.+|+.....+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv---------~v~~--~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~ 69 (449)
T 2w70_A 1 MLDKIVIANRGEIALRILRACKELGIKTV---------AVHS--SADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISA 69 (449)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEE---------EEEE--GGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHH
T ss_pred CCceEEEeCCcHHHHHHHHHHHHcCCeEE---------EEec--cccccCchhhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999884 3333 555778899999999998655666799999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCC--CCCccCCCCCccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLV 204 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s--~~~~~~~~~~~~~ 204 (2304)
|+++++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||. .
T Consensus 70 ~~~~~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~------------ 137 (449)
T 2w70_A 70 AEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGP------------ 137 (449)
T ss_dssp HHHHTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSC------------
T ss_pred HHHcCCCEEEECCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccc------------
Confidence 99999999999999999998888999999999999999999999999999999999999999986 3
Q ss_pred ccCcccccccccCCHHHH-HHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccc
Q 000086 205 TIPDDVYRQACVYTTEEA-IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQ 279 (2304)
Q Consensus 205 ~v~~~~~~~~~V~s~eea-~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g 279 (2304)
+.+.+++ .++++++|||+||||..|+||+|+++|+|.+|+.++++.+..+. .+.+++||+|++|
T Consensus 138 -----------~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 206 (449)
T 2w70_A 138 -----------LGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 206 (449)
T ss_dssp -----------CCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS
T ss_pred -----------cCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC
Confidence 5677888 88889999999999999999999999999999999998876431 2468999999998
Q ss_pred cceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~ 359 (2304)
++|++|+++++.+|+++.++.|+|+++++|++..+.+|++.++++..+++.+.+.++++++||.|++++||+++ ++++
T Consensus 207 ~~e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~--~~~~ 284 (449)
T 2w70_A 207 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEF 284 (449)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEE
T ss_pred CeEEEEEEEEcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCCE
Confidence 89999999999889999999999999999999999999987899999999999999999999999999999999 4889
Q ss_pred EEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000086 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2304)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~g 439 (2304)
||+|+|||+|+++++++.++|+|++++++++++|.|++. .+......|
T Consensus 285 ~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~--------------------------------~~~~~~~~~ 332 (449)
T 2w70_A 285 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSI--------------------------------KQEEVHVRG 332 (449)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHHTCCCSS--------------------------------CGGGCCCCS
T ss_pred EEEEEECCCCccchHHHHHhCCCHHHHHHHHHCCCCCCC--------------------------------chhccccce
Confidence 999999999999999999999999999999999998752 011233458
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 440 hai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
|++++++++++| .+|.|.+|.+..+.++..++++++..+.+|..+++++++++|||+++|+|+++|++++.++++++++
T Consensus 333 ~~~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~ 411 (449)
T 2w70_A 333 HAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELII 411 (449)
T ss_dssp EEEEEEEECBCT-TTCCBCCEECCEEECCCSTTEEEECCCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEE
T ss_pred eEEEEeecccCc-cccCCCCCEeceEECCCCCcEEEEeccccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEE
Confidence 999999999999 8999999999988888778998888888999998899999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCccccccccccchhhhhhhhh
Q 000086 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2304)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2304)
+| ++|||.||+++|++|+|++|+++|+|||+++++
T Consensus 412 ~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
T 2w70_A 412 DG-IKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL 446 (449)
T ss_dssp ES-SCCSHHHHHHHHTCHHHHHCCCCTTHHHHHHTC
T ss_pred eC-cCCCHHHHHHHHcChhhccCCceehhhhhhhhc
Confidence 99 999999999999999999999999999998654
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=457.16 Aligned_cols=386 Identities=15% Similarity=0.148 Sum_probs=317.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
.++||||+|+|+.+++++++++++|++++ ++ . ..+.++++.++||+++.+| |.|.+.|+++
T Consensus 6 ~~~~ilI~g~g~~~~~~~~a~~~~G~~~v---------~v-~--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~ 66 (403)
T 4dim_A 6 DNKRLLILGAGRGQLGLYKAAKELGIHTI---------AG-T--MPNAHKPCLNLADEISYMD-------ISNPDEVEQK 66 (403)
T ss_dssp CCCEEEEECCCGGGHHHHHHHHHHTCEEE---------EE-E--CSSCCHHHHHHCSEEEECC-------TTCHHHHHHH
T ss_pred CCCEEEEECCcHhHHHHHHHHHHCCCEEE---------EE-c--CCCCCCcchhhCCeEEEec-------CCCHHHHHHH
Confidence 46899999999999999999999999985 22 2 2335778999999999884 5679999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|+|+ |+.++...+++.+++.|+ +||++++++.++||..++++++++|||+|+|..
T Consensus 67 ~~~~~~d~v~~~-~~~~~~~~~a~~~~~~gl--~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-------------- 129 (403)
T 4dim_A 67 VKDLNLDGAATC-CLDTGIVSLARICDKENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFV-------------- 129 (403)
T ss_dssp TTTSCCSEEECC-SCSTTHHHHHHHHHHHTC--SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEEC--------------
T ss_pred HHHcCCCEEEeC-CcchhHHHHHHHHHHcCc--CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE--------------
Confidence 999999999997 777776678888888996 699999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.....+.++++|+|++| .|+++.
T Consensus 130 ---------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~ 199 (403)
T 4dim_A 130 ---------VRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQ 199 (403)
T ss_dssp ---------CCSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEE
T ss_pred ---------eCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEE
Confidence 7889999999999999999999999999999999999999999999988777789999999987 799999
Q ss_pred EEEcCCCCEEEeeccccccccccc--eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCcee-eeEEEEEEEccCCcEEEEE
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQ--KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG-AATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~q--KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~G-a~tVEfl~d~~~g~~yfLE 363 (2304)
++.. +|++..+..........+. ......|+. ++++..++|.+.+.++++++||.| ++++||+++ ++++||+|
T Consensus 200 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~--~~~~~~iE 275 (403)
T 4dim_A 200 AFVY-KNDVLFVMPHGDETYMSHTAVPVGHYVPLD-VKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYIIE 275 (403)
T ss_dssp EEEE-TTEEEEEEEEEEEEEESSSEEEEEEEESCC-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE--TTEEEEEE
T ss_pred EEEE-CCEEEEEEEecceeccCCCCcceeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE--CCcEEEEE
Confidence 9875 3666554321110000000 011233666 889999999999999999999996 999999998 78999999
Q ss_pred eccCCCCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000086 364 LNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2304)
Q Consensus 364 INpRlqgeh--pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~gha 441 (2304)
+|||+++++ .+++.++|+|++++++++++|.|++.++ +......+|
T Consensus 276 iN~R~~~~~~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~-------------------------------~~~~~~~~~- 323 (403)
T 4dim_A 276 LTGRVGANCLPELVEINYGIEYYKMIASMAISENPLVFW-------------------------------SQKSKENKA- 323 (403)
T ss_dssp EESSCCSTTHHHHHHHHHTSCHHHHHHHHHTTCCTHHHH-------------------------------TTCCSSCCE-
T ss_pred EcCCCCCCcHHHHHHHHhCcCHHHHHHHHHcCCCccccc-------------------------------ccccccccc-
Confidence 999999986 4788999999999999999999873211 111122344
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCc--E-EEEEeeeeCCcccccCCC--ccEEEEEEeCCHHHHHHHHHHhhcc
Q 000086 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPN--V-WAYFSVKSGGGIHEFSDS--QFGHVFAFGESRALAIANMVLGLKE 516 (2304)
Q Consensus 442 i~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~--V-~~~~~v~~G~~i~~~~Ds--~~g~via~G~~reeA~~~l~~AL~e 516 (2304)
+.+|++. |.|.+|+|..+.++..++ + .++..+.+|..+++++|| ++|+|+++|+|+++|++++.+++++
T Consensus 324 ~~~~~~~------~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~~ 397 (403)
T 4dim_A 324 GLARMII------ETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIINN 397 (403)
T ss_dssp EEEEEEC------CSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHTT
T ss_pred ceEEEEE------ecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhcc
Confidence 5678865 568899999888765443 3 346788999999999999 8999999999999999999999999
Q ss_pred eEEe
Q 000086 517 IQIR 520 (2304)
Q Consensus 517 l~I~ 520 (2304)
++|+
T Consensus 398 ~~i~ 401 (403)
T 4dim_A 398 INII 401 (403)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=422.32 Aligned_cols=356 Identities=15% Similarity=0.103 Sum_probs=278.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
||||||+|+|..+..+++++|++||+|+ ++ |.++++++.++||+++.++. +.|.+.++.++
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv-----------~v--d~~~~~~~~~~aD~~~~~~~------~~d~~~~~~~~ 61 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVV-----------LV--DKNPQALIRNYADEFYCFDV------IKEPEKLLELS 61 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTTTTSSEEEECCT------TTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCChhHhhCCEEEECCC------CcCHHHHHHHh
Confidence 7999999999999999999999999985 44 55678888999999999864 34567777666
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+ ++|+|+|++|+.+++..+...+++.++ ++||++++++.++||..+|++++++|||+|+|..
T Consensus 62 ~--~~D~v~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~--------------- 123 (363)
T 4ffl_A 62 K--RVDAVLPVNENLACIEFLNSIKEKFSC-PVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP--------------- 123 (363)
T ss_dssp T--SSSEEEECCCCHHHHHHHHHHGGGCSS-CBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC---------------
T ss_pred c--CCCEEEECCCChhHHHHHHHHHHHCCC-ccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee---------------
Confidence 4 689999999987765444454555555 5799999999999999999999999999998643
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+|||+||||+.|+||+|+++|+|.+++.. ....+++|+|++| +|++|++
T Consensus 124 ---------------------ig~P~vvKp~~g~g~~gv~~v~~~~~~~~---------~~~~~~~ee~i~g-~e~sv~~ 172 (363)
T 4ffl_A 124 ---------------------SKPPYFVKPPCESSSVGARIIYDDKDLEG---------LEPDTLVEEYVEG-EVVSLEV 172 (363)
T ss_dssp ---------------------SSSCEEEECSSCCTTTTCEEEC------C---------CCTTCEEEECCCS-EEEEEEE
T ss_pred ---------------------cCCCEEEEECCCCCCcCeEEeccHHHhhh---------hccchhhhhhccC-cEEEEEE
Confidence 58999999999999999999999988753 2457899999976 8999999
Q ss_pred EEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccC
Q 000086 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2304)
Q Consensus 288 l~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2304)
++|+.+.++....++|..++.+++.+..+|.. +++.+.+.++++++||+|++++||+++ ++++||+|+|||
T Consensus 173 ~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~a~~~~~~l~~~G~~~vef~~~--~~~~~viEiN~R 243 (363)
T 4ffl_A 173 VGDGSHFAVVKETLVHIDETYDCHMVTPLPAN-------PLFRQISHDLAANLPLKGIMDVEAIFG--PKGLRVIEIDAR 243 (363)
T ss_dssp EEESSCEEECCCEEEEECTTSCEEEEEECCCC-------HHHHHHHHHHHHTTTCEEEEEEEEEEE--TTEEEEEEEECS
T ss_pred EEECCeEEEEEEEEeccCCcccceeecchhHH-------HHHHHHHHHHHHhCCccceeeeeeEEe--CCeEEEEEEeCC
Confidence 99998888888888888888888877766543 568889999999999999999999999 578999999999
Q ss_pred CCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000086 368 LQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2304)
Q Consensus 368 lqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI 446 (2304)
+++.++ ++++++|+|++++++++++|.+++.. .....+|++.+++
T Consensus 244 ~~g~~~~~~~~~~g~dl~~~~~~~~~g~~~~~~----------------------------------~~~~~~~~~~~~~ 289 (363)
T 4ffl_A 244 FPSQTPTVVYYSSGINLIELLFRAFTDGVEEIR----------------------------------AIPENKYCIYEHL 289 (363)
T ss_dssp CCSSHHHHHHHHHCCCHHHHHHHHTTTCCCCC--------------------------------------CCCEEEEEEE
T ss_pred CCCChHHHHHHHHCcCHHHHHHHHHCCCCCCcc----------------------------------ccCCCceEEEEEE
Confidence 999886 89999999999999999999987531 1122356666666
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeC-CcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000086 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSG-GGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2304)
Q Consensus 447 ~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G-~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2304)
.+++. ..+.|..+.+. ...+++.. +....+ +.....+++++|+|+++|+||+||++++++||+.++.+
T Consensus 290 ~~~~~-~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~vi~~G~~~~eA~~k~~~al~~i~~~ 358 (363)
T 4ffl_A 290 MFGEN-GVLIPVGEQVL----SMGSDYGK-FYEEPGIEIFLCKGEYPVFTMVFWGKDREETGAKRCKGLSVLKER 358 (363)
T ss_dssp EECGG-GBEEECCHHHH----TTCSEEEE-EEEETTEEEEEEESSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CccCCCCceEE----ecCCCeeE-EEecCCCCCEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 65442 23444443332 12223322 222222 12235688999999999999999999999999987654
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=473.19 Aligned_cols=396 Identities=19% Similarity=0.268 Sum_probs=326.3
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 46 ~~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
+.++||||+|+|++ +.+++++++++||+++ .+.++.+....+.++||+.+..|
T Consensus 5 ~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~i~p----- 68 (1073)
T 1a9x_A 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-----------NVNSNPATIMTDPEMADATYIEP----- 68 (1073)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-----------EECSCTTCGGGCGGGSSEEECSC-----
T ss_pred CCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEECC-----
Confidence 46899999999985 6789999999999985 44444444456788999988544
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcC-CCCC--chH--HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHA-SEIP--ELP--DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~-SEn~--~la--~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp 189 (2304)
.|.+.|.++++++++|+|+|++|+. .++. .+. ..|++.|+.++||++++++.+.||..++++++++|||+|+
T Consensus 69 ---~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~ 145 (1073)
T 1a9x_A 69 ---IHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETAR 145 (1073)
T ss_dssp ---CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCS
T ss_pred ---CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCC
Confidence 3689999999999999999998852 1111 122 2677889999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000086 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2304)
Q Consensus 190 ~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2304)
|.. +.+.+++.++++++||||||||+.|+||+|+++|+|++||.++++......+..
T Consensus 146 ~~~-----------------------v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~ 202 (1073)
T 1a9x_A 146 SGI-----------------------AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTK 202 (1073)
T ss_dssp EEE-----------------------ESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTS
T ss_pred EEE-----------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCC
Confidence 875 788999999999999999999999999999999999999999999888777677
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccc------cceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce
Q 000086 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR------HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2304)
Q Consensus 270 ~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr------~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~ 343 (2304)
+++||+|++|.+|+++++++|.+|+++.+ |++++. +++.+..+|+..++++..++|.+.+.++++++||+
T Consensus 203 ~vlvEe~I~G~~E~~v~v~~d~~g~~v~~----~~~e~~dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~ 278 (1073)
T 1a9x_A 203 ELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVE 278 (1073)
T ss_dssp CEEEEECCTTSEEEEEEEEECTTCCEEEE----EEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cEEEEEccCCCeEEEEEEEEeCCCCEEEE----EEEecccCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999998999999999999999887 666653 35567778998799999999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
|.++|||++++++|++||+|||||++++++++++++|+|+++.++++++|.+++.++.
T Consensus 279 ~G~~~vdf~~~~~~g~~~viEiNpR~~~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~--------------------- 337 (1073)
T 1a9x_A 279 TGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMN--------------------- 337 (1073)
T ss_dssp SEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBC---------------------
T ss_pred cCceEEEEEEECCCCCEEEEEecCCCCccHHHHHHHhCCCHHHHHHHHHcCCChHHhhc---------------------
Confidence 9999999999657899999999999999999999999999999999999999864311
Q ss_pred cccCCCccccCCCCCceEEEEEEEccC-CCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeC
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSE-DPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aE-dp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~ 501 (2304)
+++.+ +|. .|.|+.|.+. +.+|..+ .+.....+..+...++| +|||+++|+
T Consensus 338 ----------------------~i~~~~~~a-~f~p~~~~v~-~~ip~~~---~~~~~~~~~~~~~~~~~-~G~v~~~g~ 389 (1073)
T 1a9x_A 338 ----------------------DITGGRTPA-SFEPSIDYVV-TKIPRFN---FEKFAGANDRLTTQMKS-VGEVMAIGR 389 (1073)
T ss_dssp ----------------------TTTTTCSBS-CSCCBCSSEE-EEEEECC---GGGCTTSCCBCCSSCCC-CEEEEEEES
T ss_pred ----------------------cccCccCHH-HcccCCCcEE-EEccccc---ccccCCCCcccCCCccC-cEEEEEEcC
Confidence 12223 343 5677766552 1222111 01111234555666666 899999999
Q ss_pred CHHHHHHHHHHhhcceEEecccccC--------HHHHHHhcCccc
Q 000086 502 SRALAIANMVLGLKEIQIRGEIRTN--------VDYTIDLLHASD 538 (2304)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G~v~tn--------~~~l~~ll~~~~ 538 (2304)
|++||++++.++|+ +.+.| +.+| .+.|.+.|.+|.
T Consensus 390 ~~~ea~~ka~~~l~-~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~ 432 (1073)
T 1a9x_A 390 TQQESLQKALRGLE-VGATG-FDPKVSLDDPEALTKIRRELKDAG 432 (1073)
T ss_dssp SHHHHHHHHHHHSS-SSCSS-SCCSSCTTCTTHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHhhc-ccccC-cCccccccccccHHHHHHHHhCCC
Confidence 99999999999997 88999 6644 678888888887
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-41 Score=422.05 Aligned_cols=395 Identities=15% Similarity=0.132 Sum_probs=306.2
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
+..|+|+|+|+|.....++++|+++|++++ ++. ++.+..+.+...+|+++.+|...+.+.+ .+.+.+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv---------~v~--~~~~~~~~~~~~~d~~~~~~~~~d~~~~--~~~~~~ 69 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVT---------FFY--NSAEDFPGNLPAVERCVPLPLFEDEEAA--MDVVRQ 69 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEE---------EEE--ETTSCCCCSCTTEEEEEEECTTTCHHHH--HHHHHH
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEE---------EEE--CCCcccccCHhhccEEEecCCCCCHHHH--HHHHHH
Confidence 346899999999999999999999999984 333 3555667788899999998754333333 566777
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
++++.++|+|+++++...+ ..+..++..|+ +||++++++.++||..+|++++++|||+|+|..
T Consensus 70 ~~~~~~id~V~~~~e~~~~--~~a~l~e~lgl--pg~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 132 (425)
T 3vot_A 70 TFVEFPFDGVMTLFEPALP--FTAKAAEALNL--PGLPFTTMENCRNKNKTRSILQQNGLNTPVFHE------------- 132 (425)
T ss_dssp HHHHSCCSEEECCCGGGHH--HHHHHHHHTTC--SSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------------
T ss_pred hhhhcCCCEEEECCchhHH--HHHHHHHHcCC--CCCCHHHHHHhhCHHHHHHHHHHCCCCCCceec-------------
Confidence 8888999999988654332 13445566774 599999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---------CCCcEEEEEe
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---------PGSPIFIMKV 276 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---------~~~~i~VEey 276 (2304)
+++.+++. +.++|||+||||..|+||+||++|+|.+|+.++++.+.... .+.++++|+|
T Consensus 133 ----------~~~~~~~~--~~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~ 200 (425)
T 3vot_A 133 ----------FHTLADLE--NRKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQF 200 (425)
T ss_dssp ----------ESSGGGGT--TCCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEEC
T ss_pred ----------cCcHHHHH--HhhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEE
Confidence 55555553 35799999999999999999999999999999999886433 2568999999
Q ss_pred ccccceeeEEEEEcCCCC--EEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCce-eeeEEEEEEE
Q 000086 277 ASQSRHLEVQLLCDQYGN--VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2304)
Q Consensus 277 I~g~reieVqvl~D~~G~--vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~-Ga~tVEfl~d 353 (2304)
++| +|++|+++.++ |+ ++.+..+.++.+..+++.....|+. ++++..+++.+.+.++++++|+. |++++||+++
T Consensus 201 i~G-~e~sv~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~-l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~ 277 (425)
T 3vot_A 201 IDG-PEFAIETLSIQ-GNVHVLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLD 277 (425)
T ss_dssp CCS-CEEEEEEEEET-TEEEEEEEEEEECCCCSBCCCCEEEESCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred ecC-cEEEEEEEEeC-CcEEEEeEEEEeccCCCccccceEeeccc-CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEE
Confidence 987 79999998764 44 4455666677666666667778887 88999999999999999999995 9999999998
Q ss_pred ccCCcEEEEEeccCCCCC---cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCcc
Q 000086 354 METGEYYFLELNPRLQVE---HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430 (2304)
Q Consensus 354 ~~~g~~yfLEINpRlqge---hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~ 430 (2304)
+ +|++||+|+|||++|. |.++++++|+|+++++++.++|.+.... +
T Consensus 278 ~-dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~---------------------------~--- 326 (425)
T 3vot_A 278 K-DGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSE---------------------------F--- 326 (425)
T ss_dssp T-TCCEEEEEEESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGG---------------------------S---
T ss_pred e-CCcEEEEEEecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCccccc---------------------------c---
Confidence 4 7789999999999775 5688999999999999999999754310 0
Q ss_pred ccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCccccc--CCCccEEEEEEeCCH
Q 000086 431 QAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEF--SDSQFGHVFAFGESR 503 (2304)
Q Consensus 431 ~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~--~Ds~~g~via~G~~r 503 (2304)
.....+..++....+.+ |.+|++..+. +...|+| ++...+.+|..+.++ +++++|||+++|+|+
T Consensus 327 -~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~ 397 (425)
T 3vot_A 327 -EGEIRPVRTAGNYIIPV--------QGSGTFEKIDGLEEVKQRQEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSY 397 (425)
T ss_dssp -CSCCCCSSEEEEEECCC--------CSCEEEEEEETHHHHHTCTTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSH
T ss_pred -ccccccceEEEEEEEcC--------CCCeEEEecCCHHHHhcCCCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCH
Confidence 01122334554444433 3467776653 3456787 577778899998765 567899999999999
Q ss_pred HHHHHHHHHhhcceEEecccccCH
Q 000086 504 ALAIANMVLGLKEIQIRGEIRTNV 527 (2304)
Q Consensus 504 eeA~~~l~~AL~el~I~G~v~tn~ 527 (2304)
++|+++++++++.++|.. ++|+
T Consensus 398 ~ea~~~~~~~~~~i~i~~--~~~i 419 (425)
T 3vot_A 398 EECEAFYRELDDELHIIY--QNNL 419 (425)
T ss_dssp HHHHHHHHHHHHHCEEEE--CC--
T ss_pred HHHHHHHHHHhCccEEEE--eCCC
Confidence 999999999999999976 5554
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=409.31 Aligned_cols=378 Identities=15% Similarity=0.158 Sum_probs=299.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+++||||+|+|..+..++++++++|++++ .+ |..+++++.+++|+.+.++ |.|.+.|+++
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~d~~~~~~-------~~d~~~l~~~ 69 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVI-----------AV--DRYADAPAMHVAHRSHVIN-------MLDGDALRRV 69 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEE-----------EE--ESSTTCGGGGGSSEEEECC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--ECCCCCchhhhccceEECC-------CCCHHHHHHH
Confidence 45799999999999999999999999874 33 3334567888999998874 5678999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
|+++++|+|+|++++...+ +++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 70 ~~~~~~d~v~~~~e~~~~~--~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~------------- 133 (391)
T 1kjq_A 70 VELEKPHYIVPEIEAIATD--MLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRF------------- 133 (391)
T ss_dssp HHHHCCSEEEECSSCSCHH--HHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEE-------------
T ss_pred HHHcCCCEEEECCCcCCHH--HHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeee-------------
Confidence 9999999999998876543 5677888998 6799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~i~VEeyI~g~rei 283 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|+++++|+
T Consensus 134 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 203 (391)
T 1kjq_A 134 ----------ADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEI 203 (391)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEE
Confidence 678899999999999999999999999999999999999999999886543 24689999999967899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+|.++.++.| .......+ .............|++ ++++..+++.+.+.++++++||+|++++||+++ ++++||+|
T Consensus 204 sv~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~viE 278 (391)
T 1kjq_A 204 TLLTVSAVDG-VHFCAPVG-HRQEDGDYRESWQPQQ-MSPLALERAQEIARKVVLALGGYGLFGVELFVC--GDEVIFSE 278 (391)
T ss_dssp EEEEEEETTE-EEECCCEE-EEEETTEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEE--TTEEEEEE
T ss_pred EEEEEEeCCC-eEEccCcc-eEEECCEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCcEEEEE
Confidence 9999998766 22211111 0000011111234776 889999999999999999999999999999999 34899999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~ 443 (2304)
+|||++++..++...+|+|++++++++++|.+++. +...+|++.
T Consensus 279 iN~R~~~~~~~~~~~~g~~~~~~~~~~~~G~~~~~------------------------------------~~~~~~~~~ 322 (391)
T 1kjq_A 279 VSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGG------------------------------------IRQYGPAAS 322 (391)
T ss_dssp EESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCC------------------------------------CCBCSSEEE
T ss_pred EECCCCCCcceeeeecCcCHHHHHHHHHcCCCCCC------------------------------------ccccCcEEE
Confidence 99999998766666679999999999999998752 112467888
Q ss_pred EEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 444 VRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 444 ~RI~aEdp~~~f~P~-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+++++++|.. .|. .|... ... |++.+.. .+.....+++.+|||+++|+|+++|++++.++++.++|+|
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~---~~~-pg~~v~~----~~~~~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 391 (391)
T 1kjq_A 323 AVILPQLTSQ--NVTFDNVQN---AVG-ADLQIRL----FGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG 391 (391)
T ss_dssp EEECCEEEES--SCEEECGGG---SCB-TTEEEEE----CCCCCEEEECCCEEEEEECSSHHHHHHHHHHHHHHCEEEC
T ss_pred EEEEccCccc--ccccccHHH---HhC-CCCEEEE----eccCCCCCCCeEEEEEEecCCHHHHHHHHHHHHhhheecC
Confidence 8999987632 222 23322 223 5553332 1223356778899999999999999999999999999874
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=410.77 Aligned_cols=390 Identities=16% Similarity=0.170 Sum_probs=295.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+++||||+|+|..+..++++++++|++++ .+ |..++++..+++|+.+.++ |.|.+.|+++
T Consensus 18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~-----------~v--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~ 77 (433)
T 2dwc_A 18 SAQKILLLGSGELGKEIAIEAQRLGVEVV-----------AV--DRYANAPAMQVAHRSYVGN-------MMDKDFLWSV 77 (433)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCHHHHHSSEEEESC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhcceEEECC-------CCCHHHHHHH
Confidence 35799999999999999999999999875 33 3335567889999998874 5778999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
|++.++|+|++++++.+. .+++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 78 ~~~~~~d~V~~~~e~~~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~------------- 141 (433)
T 2dwc_A 78 VEREKPDAIIPEIEAINL--DALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMY------------- 141 (433)
T ss_dssp HHHHCCSEEEECSSCSCH--HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEE-------------
T ss_pred HHHcCCCEEEECcccCCH--HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeE-------------
Confidence 999999999999987654 46778888998 7799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~i~VEeyI~g~rei 283 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|+++++|+
T Consensus 142 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 211 (433)
T 2dwc_A 142 ----------ATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEV 211 (433)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeE
Confidence 678899999999999999999999999999999999999999998776432 24689999999866899
Q ss_pred eEEEEEcC--CCCEEE-eeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 284 EVQLLCDQ--YGNVAA-LHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 284 eVqvl~D~--~G~vi~-l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
+|.++.+. +|+++. +...--.............|++ ++++..+++.+.+.++++++||+|++++||++++ +++|
T Consensus 212 sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~~~~ 288 (433)
T 2dwc_A 212 TELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKG--DKVW 288 (433)
T ss_dssp EECCEEEECTTSCEEEEEECCEEEEESSSSEEEEEESCC-CCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEET--TEEE
T ss_pred EEEEEecccCCCCEeEEEecccceEEEcCEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC--CcEE
Confidence 99999875 677432 2111000111111122234776 8899999999999999999999999999999993 4899
Q ss_pred EEEeccCCCCCccee--hhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000086 361 FLELNPRLQVEHPVT--EWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2304)
Q Consensus 361 fLEINpRlqgehpvt--E~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2304)
|+|+|||+++++..+ ..++|+|++++++++++|.|++... +. .+..+...
T Consensus 289 viEiN~R~~~~~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~---------~~-------------------~~~~~~~~ 340 (433)
T 2dwc_A 289 ANEVSPRPHDTGMVTLASHPPGFSEFALHLRAVLGLPIPGEW---------VD-------------------GYRLFPML 340 (433)
T ss_dssp EEEEESSCCGGGGGHHHHSCTTCSHHHHHHHHHHTCCCCCEE---------ET-------------------TEEEECCS
T ss_pred EEEEeCCcCCCcceehhHhccCCCHHHHHHHHHcCCCCCccc---------cc-------------------cccccccc
Confidence 999999999885433 4467999999999999999875200 00 00112234
Q ss_pred eEEEEEEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 439 GHCVAVRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 439 ghai~~RI~aEdp~~~f~P~-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
+|++.+++++++|.. .|. .|....+ ..|++.+.. .+.....+++.+|||+++|+|+++|++++.++++.+
T Consensus 341 ~~a~~~~v~~~~~~~--~~~i~g~~~~~---~~pg~~v~~----~~~~~~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i 411 (433)
T 2dwc_A 341 IPAATHVIKAKVSGY--SPRFRGLVKAL---SVPNATVRL----FGKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAHMI 411 (433)
T ss_dssp SCEEEEEEECSSCEE--SCEEECHHHHT---TSTTEEEEE----CCCSEECTTCEEEEEEEECSSHHHHHHHHHHHHHTC
T ss_pred ccEEEEEEEcCCCCc--CcCcchHHHHh---hCCCcEEEE----ecCCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHhhe
Confidence 788889999987532 222 2322212 334543222 122234577889999999999999999999999999
Q ss_pred EEecc
Q 000086 518 QIRGE 522 (2304)
Q Consensus 518 ~I~G~ 522 (2304)
.++|+
T Consensus 412 ~~~~~ 416 (433)
T 2dwc_A 412 ELRTR 416 (433)
T ss_dssp EEECT
T ss_pred EEEee
Confidence 99993
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=399.80 Aligned_cols=360 Identities=20% Similarity=0.217 Sum_probs=293.7
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||||+|+|..+..++++++++||+++ ++ |.+.+.+..++||+ +.. +|.|.+.++++|
T Consensus 1 ~iliiG~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~a~~-~~~-------~~~d~~~l~~~~-- 57 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGYPLGLSFR-----------FL--DPSPEACAGQVGEL-VVG-------EFLDEGALLRFA-- 57 (369)
T ss_dssp CEEEECCSHHHHHHHHHHTTBTCCEE-----------EE--ESCTTCGGGGTSEE-EEC-------CTTCHHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCChHHHhhce-Eec-------CCCCHHHHHHHH--
Confidence 69999999999999999999999874 33 22345567788998 543 567899999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
.++|+|++++++.. ..+.+.|++.| ++||+++++..++||..++++++++|||+|+|..
T Consensus 58 ~~~d~v~~~~e~~~--~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 116 (369)
T 3aw8_A 58 EGLALVTYEFENVP--VEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHP----------------- 116 (369)
T ss_dssp TTCSEEEECCTTCC--HHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEE-----------------
T ss_pred hCCCEEEECCCCcC--HHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee-----------------
Confidence 68999999987653 45677888888 7899999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+++.+++.++++++|||+||||..|+ ||+|+++|+|.+|+.++++.+. +.+++||+|+++++|++|+++
T Consensus 117 ------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~~g~e~sv~~~ 186 (369)
T 3aw8_A 117 ------VDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALG----GRGLILEGFVPFDREVSLLAV 186 (369)
T ss_dssp ------ESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTC----SSSEEEEECCCCSEEEEEEEE
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcC----CCcEEEEEcCCCCEEEEEEEE
Confidence 77899999999999999999999999 9999999999999999887652 568999999986799999999
Q ss_pred EcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCC
Q 000086 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2304)
Q Consensus 289 ~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2304)
.|++|+++.+ +..+..++.+++.....|++.++++..+++.+.+.++++++||+|.+++||+++ .|++||+|+|||+
T Consensus 187 ~d~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~--~~~~~viEiN~R~ 263 (369)
T 3aw8_A 187 RGRTGEVAFY-PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQV--GEELLFNEMAPRV 263 (369)
T ss_dssp ECTTSCEEEC-CCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSC
T ss_pred ECCCCCEEEE-CCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEEeCCc
Confidence 9988888764 444556666666667788887889999999999999999999999999999999 3889999999999
Q ss_pred CCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEcc
Q 000086 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTS 448 (2304)
Q Consensus 369 qgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~a 448 (2304)
++++..+++++|+|+++.+++.++|.+++.+ ...++++.+++++
T Consensus 264 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~------------------------------------~~~~~~~~~~~~~ 307 (369)
T 3aw8_A 264 HNSGHWTIEGAETSQFENHLRAVLGLPLGST------------------------------------APRGQSAMVNLIG 307 (369)
T ss_dssp CGGGTTHHHHBSSCHHHHHHHHHHTCCCCCC------------------------------------CBCSEEEEEEEES
T ss_pred CCccceeeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccccEEEEEEeC
Confidence 9988888889999999999999999988531 1235688899998
Q ss_pred CCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000086 449 EDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2304)
Q Consensus 449 Edp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2304)
++| + +.. +...|++.+ .+. |..++ ....+|||+++|+|+++|++++.++++.+.
T Consensus 308 ~~~--------~-~~~--~~~~p~~~~--~~~-g~~~~--~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 308 EKP--------P-FAE--VLKVEGAHL--HWY-GKAVR--PGRKVGHITLRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp CCC--------C-HHH--HHTSTTEEE--EEC-CCCCC--TTCEEEEEEEEESSHHHHHHHHHHHHTTSS
T ss_pred CCc--------h-HHH--hccCCCcEE--EEe-cCCCC--CCCeEEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 762 1 222 122345421 121 22222 236799999999999999999999999876
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=402.62 Aligned_cols=372 Identities=20% Similarity=0.230 Sum_probs=297.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+.+||||+|+|+.+.+++++++++||+++ +. |.++++++.++||+++.. +|.|.+.|.++
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~~ 93 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVA-----------VL--DPDPASPAGAVADRHLRA-------AYDDEAALAEL 93 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--CSCTTCHHHHHSSEEECC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--CCCCcCchhhhCCEEEEC-------CcCCHHHHHHH
Confidence 34799999999999999999999999974 33 566789999999998864 57889999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+ ++|+|+++ +...+..+.+.|++. .++||++++++.++||..+|++++++|||+|+|..
T Consensus 94 a~--~~D~V~~~--~e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 153 (419)
T 4e4t_A 94 AG--LCEAVSTE--FENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVV-------------- 153 (419)
T ss_dssp HH--HCSEEEEC--CTTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred Hh--cCCEEEEc--cCcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEE--------------
Confidence 94 68999966 445555677888877 38999999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHhhc----cCCcEEEeec-CCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000086 207 PDDVYRQACVYTTEEAIASCQV----VGYPAMIKAS-WGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~----IGyPVVIKPs-~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~r 281 (2304)
+.+.+++.+++++ + ||+||||. .|+||+|+++|+|.+|+.++++.+ .+.+++||+|+++++
T Consensus 154 ---------v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~ 219 (419)
T 4e4t_A 154 ---------IESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKY 219 (419)
T ss_dssp ---------ECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEE
T ss_pred ---------ECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCe
Confidence 7889999988888 9 99999999 889999999999999999999875 357899999999889
Q ss_pred eeeEEEEEcCCCCEEEeeccccccccccc-eEEE--eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQ-KIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 282 eieVqvl~D~~G~vi~l~~RdcSvqrr~q-Kiie--eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
|++|.+++|..|+++.+.. ++++|+ ++.. ..|++.++++..+++.+.+.++++++||+|+++|||++++ +|+
T Consensus 220 Eisv~v~~~~~G~~~~~~~----~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~ 294 (419)
T 4e4t_A 220 EVSALIARGADGRSAAFPL----AQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGS 294 (419)
T ss_dssp EEEEEEEECTTSCEEECCC----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCC
T ss_pred EEEEEEEEcCCCCEEEEeC----eEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCC
Confidence 9999999999999877642 334443 4444 5688778999999999999999999999999999999994 678
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2304)
+||+|+|||+++++++++.++|+|+++.++++++|.|++.+ . ..
T Consensus 295 ~~v~EiNpR~~~sg~~t~~~~~~s~~~~~~ra~~G~pl~~~---------------------------------~---~~ 338 (419)
T 4e4t_A 295 FVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNP---------------------------------R---QH 338 (419)
T ss_dssp EEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCC---------------------------------C---BC
T ss_pred EEEEEEeCCCCCCCCeEeeccCCCHHHHHHHHHcCCCCCCc---------------------------------c---cc
Confidence 99999999999999999999999999999999999998631 0 01
Q ss_pred eEEEEEEEccCC-CCCC--CCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhc
Q 000086 439 GHCVAVRVTSED-PDDG--FKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2304)
Q Consensus 439 ghai~~RI~aEd-p~~~--f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2304)
..++.+.+..+. +... -.+....+.. +...|++.+...-++.. .-...+|||.+.|+|.++|++++..+.+
T Consensus 339 ~~~~m~n~lg~~~~~~~~~~~~~~~~~~~--~l~~p~~~~~~ygk~~~----~~~rkmGhv~~~~~~~~~~~~~a~~~~~ 412 (419)
T 4e4t_A 339 SPAAMLNILGDVWFPNGAAAGAVTPPWDT--VAAMPAAHLHLYGKEEA----RVGRKMGHVNFTAEMRDDAVAAATACAQ 412 (419)
T ss_dssp SCEEEEEEEGGGGCTTCGGGCCCCCCHHH--HHTSTTEEEEECCCSCC----CTTCEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccccccccccchHHHH--HHhCCCCEEEECCCCCC----CCCCceEEEEEEeCCHHHHHHHHHHHHH
Confidence 224455565431 1000 0011111111 23346664443222111 1124589999999999999999999988
Q ss_pred ceEE
Q 000086 516 EIQI 519 (2304)
Q Consensus 516 el~I 519 (2304)
.+.|
T Consensus 413 ~l~~ 416 (419)
T 4e4t_A 413 LLRV 416 (419)
T ss_dssp HHTC
T ss_pred hcCc
Confidence 7754
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=393.77 Aligned_cols=369 Identities=14% Similarity=0.152 Sum_probs=298.9
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc--EEEEccCCCCCCCccCHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD--QFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~AD--e~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.+||||+|+|+.+..++++++++||+++ +. | ..+++..++|| ..+.. +|.|.+.|.+
T Consensus 24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~-----------~~--d-~~~~p~~~~ad~~~~~~~-------~~~d~~~l~~ 82 (403)
T 3k5i_A 24 SRKVGVLGGGQLGRMLVESANRLNIQVN-----------VL--D-ADNSPAKQISAHDGHVTG-------SFKEREAVRQ 82 (403)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEE-----------EE--E-STTCTTGGGCCSSCCEES-------CTTCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--E-CCCCcHHHhccccceeec-------CCCCHHHHHH
Confidence 5899999999999999999999999985 33 3 46788889999 44432 6789999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
++++ +|+|.+++.+. +..+.+.|++ |+. +||++++++.+.||..++++++++|||+|||..
T Consensus 83 ~a~~--~d~i~~e~e~~--~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~------------- 143 (403)
T 3k5i_A 83 LAKT--CDVVTAEIEHV--DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRE------------- 143 (403)
T ss_dssp HHTT--CSEEEESSSCS--CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEE-------------
T ss_pred HHHh--CCEEEECCCCC--CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEE-------------
Confidence 9986 68998775544 4457788888 987 899999999999999999999999999999876
Q ss_pred cCcccccccccC--CHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000086 206 IPDDVYRQACVY--TTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 206 v~~~~~~~~~V~--s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~re 282 (2304)
+. +.+++.++++++|||+||||..|+ ||+|+++|++.+|+.++++.+. +.+++||+|+++++|
T Consensus 144 ----------~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~i~~~~E 209 (403)
T 3k5i_A 144 ----------LVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK----DRPLYAEKWAYFKME 209 (403)
T ss_dssp ----------ESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTT----TSCEEEEECCCEEEE
T ss_pred ----------EcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcC----CCcEEEecCCCCCeE
Confidence 55 899999999999999999999998 9999999999999999998753 568999999997899
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
++|.++.|+.| +..++..+.+++.+.+.....|++.++++..+++.+.+.++++++||+|.++|||++++ +|++||+
T Consensus 210 ~sv~v~~~~~g--~~~~p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg~~~v~ 286 (403)
T 3k5i_A 210 LAVIVVKTKDE--VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLE-DDSIMLC 286 (403)
T ss_dssp EEEEEEECSSC--EEECCCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TSCEEEE
T ss_pred EEEEEEEcCCC--EEEeCCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCcEEEE
Confidence 99999999888 55677778888888777778898878999999999999999999999999999999994 6789999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai 442 (2304)
|+|||++++...+...+|+|++++++++++|.|++.. .....++++
T Consensus 287 EiNpR~~~sg~~~~~~~~~s~~~~~~ra~~G~pl~~~----------------------------------~~~~~~~a~ 332 (403)
T 3k5i_A 287 EIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQ----------------------------------SLEIRQPSI 332 (403)
T ss_dssp EEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCGG----------------------------------GGSBSSCEE
T ss_pred EeecCCCCCCceeeeecCCCHHHHHHHHHcCCCCCcc----------------------------------cccCCCcEE
Confidence 9999999864444457899999999999999998631 011234577
Q ss_pred EEEEccCCCCCCCCCCCCccccc-cccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 443 AVRVTSEDPDDGFKPTSGKVQEL-SFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 443 ~~RI~aEdp~~~f~P~~G~i~~l-~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
.+.+..++... + .+..+ .+...|++.+...-++.. .-...+|||.+.|+|.++|++++.++++.+
T Consensus 333 m~nilg~~~~~---~---~~~~~~~~~~~p~~~~~~ygk~~~----~~~rkmGhv~~~~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 333 MLNIIGGAAPD---T---HLQAAECALSIPNASIHLYSKGAA----KPGRKMGHITVTAPTMHEAETHIQPLIDVV 398 (403)
T ss_dssp EEEEECCSSSS---H---HHHHHHHHTTSTTEEEEECCCCSC----CTTCEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCccc---c---chhHHHHHhcCCCCEEEECCCCCC----CCCCeeEEEEEEcCCHHHHHHHHHHHHhhh
Confidence 77777654210 1 11111 123356664433222111 113458999999999999999999998765
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=381.70 Aligned_cols=368 Identities=16% Similarity=0.178 Sum_probs=283.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||||+|+|..+..++++++++|++++ ++ |.+.+.+..+++|+++.++ |.|.+.+.+++
T Consensus 1 M~~Ililg~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~~ 60 (380)
T 3ax6_A 1 MKKIGIIGGGQLGKMMTLEAKKMGFYVI-----------VL--DPTPRSPAGQVADEQIVAG-------FFDSERIEDLV 60 (380)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTGGGSSEEEECC-------TTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceEEECC-------CCCHHHHHHHH
Confidence 4799999999999999999999999874 33 2233455677899888763 56789999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
.++|+|+++++... ..+.+.|++.|++ +||++++++.++||..++++++++|||+|+|..
T Consensus 61 --~~~d~v~~~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--------------- 120 (380)
T 3ax6_A 61 --KGSDVTTYDLEHID--VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKL--------------- 120 (380)
T ss_dssp --HTCSEEEESCSCSC--HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred --hcCCEEEecccCCC--HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE---------------
Confidence 57999999876543 3466788889987 689999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+++.++ +++++|||+||||..|+ ||+|+++|++.+|+.++++ .+++||+|+++++|++|.
T Consensus 121 --------~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~--------~~~lvEe~i~~g~e~sv~ 181 (380)
T 3ax6_A 121 --------VKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK--------GETYLEEFVEIEKELAVM 181 (380)
T ss_dssp --------CSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC--------SSEEEEECCCEEEEEEEE
T ss_pred --------eCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc--------CCEEEEeccCCCeeEEEE
Confidence 567766 56789999999999999 9999999999999876654 589999999866999999
Q ss_pred EEEcCCCCEEEeecccccc--ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 287 LLCDQYGNVAALHSRDCSV--QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSv--qrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
++.|+.|++..+... +.. ++.+.......|+. ++++..+++.+.+.++++++||.|.+++||++++ +|++||+|+
T Consensus 182 ~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~~~viEi 258 (380)
T 3ax6_A 182 VARNEKGEIACYPVV-EMYFDEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGEILVNEI 258 (380)
T ss_dssp EEECSSCCEEEEEEE-EEC--------CEEEESCS-SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEE
T ss_pred EEECCCCCEEEECCe-eeeecccCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 999988887654322 222 33333333456877 8899999999999999999999999999999994 678999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~ 444 (2304)
|||+++++..+.+.+|+|++..+++.++|.+++.. . ..++++.+
T Consensus 259 N~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---------------------------------~---~~~~~~~~ 302 (380)
T 3ax6_A 259 APRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGST---------------------------------E---LLIPAVMV 302 (380)
T ss_dssp ESSCCGGGTHHHHHBSSCHHHHHHHHHTTCCCCCC---------------------------------C---BCSCEEEE
T ss_pred cCCCCCCceeehhhccccHHHHHHHHHhCCCCCCc---------------------------------c---ccCceEEE
Confidence 99999988888889999999999999999988631 0 01225567
Q ss_pred EEccCCCCCCCCC-CCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 445 RVTSEDPDDGFKP-TSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 445 RI~aEdp~~~f~P-~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
++.+++...+..+ ..| +..+ ..|++.++. .|.... .....+|||++.|+|+++|++++.++++.+.++-
T Consensus 303 ~~l~~~~~~~~~~~~~~-~~~~---~~p~~~~~~---~g~~~~-~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 372 (380)
T 3ax6_A 303 NLLGEEGYYGKPALIGL-EEAL---AIEGLSLHF---YGKKET-RPYRKMGHFTVVDRDVERALEKALRAKKILKVVS 372 (380)
T ss_dssp EEEBCTTCCBSEEEESH-HHHH---TSTTEEEEE---CCCSCB-CBTCEEEEEEEECSSHHHHHHHHHHHTTTCEEEE
T ss_pred EEecccccccccccchh-HHHh---cCCCCEEEe---cCCCCC-CCCCeeEEEEEEeCCHHHHHHHHHHHHhhhhhhc
Confidence 7777653211112 233 4433 345654332 222221 2345699999999999999999999999999875
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=382.13 Aligned_cols=376 Identities=18% Similarity=0.229 Sum_probs=285.4
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....+++++ +++|++++ + +.+. +......+| .+.+ +|.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~~~~-------~~~d~~~l~~~~~ 59 (424)
T 2yw2_A 2 KVLVVGNGGREHAIAWKVAQSPLVKEL---------Y-VAKG----NAGIWEIAK-RVDI-------SPTDVEKLAEFAK 59 (424)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CTTGGGTSE-EECS-------CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhhCCCCCEE---------E-EECC----Ccchhhhcc-cccC-------CcCCHHHHHHHHH
Confidence 799999985444444443 56787764 2 2222 333445565 3322 5678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+||.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (424)
T 2yw2_A 60 NEGVDFTIVGPEAPL-VEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEV---------------- 122 (424)
T ss_dssp HHTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999843211 124678888999999999999999999999999999999999999865
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (424)
T 2yw2_A 123 -------FTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEAS 194 (424)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEE
Confidence 778999999999999999999999999999999999999999999886531 1368999999985 8999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHHHHHC-----Cceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rlakal-----Gy~Ga~ 346 (2304)
|.++.| |+.+.. ...+++|+++.+ ..|++.+++++.+++ ++.+.++++++ +|.|++
T Consensus 195 v~~~~~--G~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (424)
T 2yw2_A 195 YIVMIN--GDRYVP----LPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFL 268 (424)
T ss_dssp EEEEEE--TTEEEE----CCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEEc--CCEEEe----ecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 999986 444443 234566666654 257766888888888 46787777765 889999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||++++ +| +||+|+|||+++.. ...+..+|+|+++.+++++.|. ++.+
T Consensus 269 ~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~-------------------------- 319 (424)
T 2yw2_A 269 YAGLMITK-EG-PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHI-------------------------- 319 (424)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCC--------------------------
T ss_pred EEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcc--------------------------
Confidence 99999994 44 99999999998653 3345568999999999999996 3310
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccc-cCCCcEEEEEeeeeCCcc----cccCCCccEEEEEE
Q 000086 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSF-KSKPNVWAYFSVKSGGGI----HEFSDSQFGHVFAF 499 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~-i~~l~~-~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~via~ 499 (2304)
.+ ..+|+++++++++++.. .|..|. |..+.. ...|+++++. .|..+ ......++|||+++
T Consensus 320 ~~---------~~~~a~~~~~~~~g~~~--~~~~g~~i~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~r~~~v~~~ 385 (424)
T 2yw2_A 320 KE---------DERYALDVVLASRGYPE--KPETGKIIHGLDYLKSMEDVVVFH---AGTKKEGNFTVTSGGRVLNVCAY 385 (424)
T ss_dssp CB---------CSSEEEEEEEECTTTTS--SCCCCCBCBCHHHHHTSTTEEEEE---SSEEEETTEEEECSSEEEEEEEE
T ss_pred cc---------cCCcEEEEEEecCCCCC--CCCCCCcCcCcccccCCCCeEEEE---cceEeeCCEEEecCCcEEEEEEE
Confidence 11 13688999999876432 355665 554432 2346765432 23222 22344668999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|+++|+++++++++++.++|
T Consensus 386 g~~~~~a~~~~~~~~~~i~~~g 407 (424)
T 2yw2_A 386 GKTLKEAKERAYEAIRYVCFEG 407 (424)
T ss_dssp ESSHHHHHHHHHHHHTTCBCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999999
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=390.66 Aligned_cols=376 Identities=15% Similarity=0.130 Sum_probs=305.5
Q ss_pred eeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCC--CchHHHHHHCCCe
Q 000086 81 ILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEI--PELPDTLSTKGII 158 (2304)
Q Consensus 81 i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn--~~la~~l~~~GI~ 158 (2304)
+..|+++...|.+...++++.||+.+.+++......+..++.|+++|+++++|+|+|+ +|+ ..+++.+++.|+.
T Consensus 52 ~~~Vav~~~~D~~~~~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~----sE~~l~~~a~~~e~~Gi~ 127 (474)
T 3vmm_A 52 KYSVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTN----NELFIAPMAKACERLGLR 127 (474)
T ss_dssp HHEEEEEECGGGCSSGGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEES----CGGGHHHHHHHHHHTTCC
T ss_pred ceEEEEEeCCCcccCCcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEC----CcccHHHHHHHHHHcCCC
Confidence 6788888888887888889999999988665555566778999999999999999995 555 5688999999987
Q ss_pred EECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeec
Q 000086 159 FLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKAS 238 (2304)
Q Consensus 159 fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs 238 (2304)
||++++++.++||..++++++++|||+|+|.. +.+.+++.++++++||||||||.
T Consensus 128 --g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~-----------------------v~s~ee~~~~~~~lg~PvVVKP~ 182 (474)
T 3vmm_A 128 --GAGVQAAENARDKNKMRDAFNKAGVKSIKNKR-----------------------VTTLEDFRAALEEIGTPLILKPT 182 (474)
T ss_dssp --CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEE-----------------------ECSHHHHHHHHHHSCSSEEEEES
T ss_pred --CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999765 78899999999999999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHhh----------CCCCcEEEEEeccccce-----------eeEE-EEEcCCCCEE
Q 000086 239 WGGGGKGIRKVHNDDEVRALFKQVQGE----------VPGSPIFIMKVASQSRH-----------LEVQ-LLCDQYGNVA 296 (2304)
Q Consensus 239 ~GgGGkGIr~V~s~eEL~~a~~~~~~e----------~~~~~i~VEeyI~g~re-----------ieVq-vl~D~~G~vi 296 (2304)
.|+||+|+++|++.+||.++++.+..+ ..+.+++||+|++|.+| +++. ++.|+.+.++
T Consensus 183 ~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v 262 (474)
T 3vmm_A 183 YLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPI 262 (474)
T ss_dssp SCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEE
T ss_pred CCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEE
Confidence 999999999999999999999987654 23578999999998764 7776 5667777778
Q ss_pred EeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeee-EEEEEEEccCCcEEEEEeccCCC--CCcc
Q 000086 297 ALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA-TVEYLYSMETGEYYFLELNPRLQ--VEHP 373 (2304)
Q Consensus 297 ~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~-tVEfl~d~~~g~~yfLEINpRlq--gehp 373 (2304)
.+..++|+.+ +++..+.+|++ ++++..++|.+.+.++++++||+|.+ ++||++++ +|++||||+|||++ .+|+
T Consensus 263 ~i~~~~~~~~--~~~~~~~~Pa~-l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg~~~~iEvNpR~~G~~~~~ 338 (474)
T 3vmm_A 263 AIHDKTPQIG--FTETSHITPSI-LDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NREPGLIESAARFAGWNMIP 338 (474)
T ss_dssp EEEEECCCBT--TBCCEEEESCC-CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GGEEEEEEEESSCCSTTHHH
T ss_pred EEEeeccCCC--ccceEEEECCC-CCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CCCEEEEEEeCCCCCCchHH
Confidence 8889999887 77888899995 89999999999999999999999888 59999995 67899999999999 5689
Q ss_pred eehhhhcCCHHHHHHHHHc-CCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCC
Q 000086 374 VTEWIAEINLPAAQVAVGM-GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPD 452 (2304)
Q Consensus 374 vtE~vtGVDL~~~qL~iA~-G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~ 452 (2304)
++++++|+|++++++++++ |.+++..+ .......+++.+|++.++++.
T Consensus 339 ~~~~~tG~dl~~~~i~~a~~G~~l~~~~-------------------------------~~~~~~~~~~~~~~~~p~~~~ 387 (474)
T 3vmm_A 339 NIKKVFGLDMAQLLLDVLCFGKDADLPD-------------------------------GLLDQEPYYVADCHLYPQHFK 387 (474)
T ss_dssp HHHHHHCCCHHHHHHHHHHHGGGSCCCS-------------------------------SCCCCCSSEEEEEEECHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCCCCCc-------------------------------ccccCCCceeEEEEEeccccc
Confidence 9999999999999999999 99886421 011123577778888776643
Q ss_pred C-CCCC-CCC--ccccccccCC----CcEEEEEe-eee----CCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000086 453 D-GFKP-TSG--KVQELSFKSK----PNVWAYFS-VKS----GGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2304)
Q Consensus 453 ~-~f~P-~~G--~i~~l~~~s~----~~V~~~~~-v~~----G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2304)
. +-.| ..+ .|..+..|.+ ..+.+..+ ... ...+-.-|||.++-++ .|.++++..+.++..|+..++
T Consensus 388 ~~~~~p~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 466 (474)
T 3vmm_A 388 QNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFEL-KGSNSQDVAESIRQIQQHAKL 466 (474)
T ss_dssp HTTSSCTTCEEEEEEEEECCTTCCCTTCEEEEEEECCTTEEECTTSCGGGCCCEEEEE-EESCHHHHHHHHHHHHHHCEE
T ss_pred cccccCCcccceeecceecccceecccceEeeccCCCCCceEEEEeehhccCceeEEe-ccccHHHHHHHHHHHHHhhhh
Confidence 2 1122 222 2344444432 12233221 111 2244556999988777 999999999999999999888
Q ss_pred ec
Q 000086 520 RG 521 (2304)
Q Consensus 520 ~G 521 (2304)
..
T Consensus 467 ~~ 468 (474)
T 3vmm_A 467 TA 468 (474)
T ss_dssp EE
T ss_pred hh
Confidence 75
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=377.18 Aligned_cols=374 Identities=17% Similarity=0.252 Sum_probs=284.3
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....+++++ +++|++++ + +.+. +......++ . ++ +|.|.+.|+++|+
T Consensus 2 kililG~g~r~~a~a~~l~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~------~~~d~~~l~~~~~ 58 (417)
T 2ip4_A 2 KVLVVGSGGREHALLWKAAQSPRVKRL---------Y-AAPG----NAGMEALAE-L--VP------WNGDVEALADWAL 58 (417)
T ss_dssp EEEEEESSHHHHHHHHHHHTCSSCCEE---------E-EEEC----CTTGGGTSE-E--CC------CCSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE---------E-EECC----Ccchhhhcc-c--CC------CccCHHHHHHHHH
Confidence 799999986566666666 45787764 1 2222 222333344 3 32 4678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 59 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~---------------- 121 (417)
T 2ip4_A 59 AEGIDLTLVGPEAPL-VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRV---------------- 121 (417)
T ss_dssp HHTCCEEEECSSHHH-HTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeee----------------
Confidence 999999999854321 124778888899999999999999999999999999999999999865
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.....+.+++||+|++| +|++|.++
T Consensus 122 -------~~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~ 193 (417)
T 2ip4_A 122 -------FREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLAL 193 (417)
T ss_dssp -------ESSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEE
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEE
Confidence 7789999999999999999999999999999999999999999998863333478999999985 79999999
Q ss_pred EcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHHHHHC-----CceeeeEEEE
Q 000086 289 CDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAATVEY 350 (2304)
Q Consensus 289 ~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rlakal-----Gy~Ga~tVEf 350 (2304)
.| |+.+..+ .++++|++..+ ..|++ +++++.+++ ++.+.++++++ +|.|++++||
T Consensus 194 ~~--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~ 266 (417)
T 2ip4_A 194 TD--GETILPL----LPSQDHKRLLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGL 266 (417)
T ss_dssp ES--SSCEEEC----CCBEECCEEETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred Ee--CCEEEEc----chheechhhccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 86 4443332 23455555432 35777 888888888 66777777765 8899999999
Q ss_pred EEEccCCcEEEEEeccCCCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000086 351 LYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2304)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2304)
++++ +| +||+|+|||+++... ..+..+|+|+++.+++++.|. ++. ..+.|
T Consensus 267 ~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~------------------------~~~~~-- 317 (417)
T 2ip4_A 267 MLTR-EG-PKVLEFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAG------------------------TRLSW-- 317 (417)
T ss_dssp EECS-SC-EEEEEEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGG------------------------CCCCB--
T ss_pred EEeC-CC-eEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCc------------------------CCccc--
Confidence 9984 55 999999999987642 334568999999999999996 321 01111
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEEeeeeCCccc----ccCCCccEEEEEEeCCHH
Q 000086 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYFSVKSGGGIH----EFSDSQFGHVFAFGESRA 504 (2304)
Q Consensus 430 ~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~-i~~l~~~s~~~V~~~~~v~~G~~i~----~~~Ds~~g~via~G~~re 504 (2304)
..++++.+++.++++.. .|..|. |..+... |+++++. .|..+. ....+++|||+++|+|++
T Consensus 318 -------~~~~~~~~~l~~~~~~~--~~~~g~~i~~~~~~--~~v~~~~---~g~~~~~~~~~~~~~rv~~v~~~g~~~~ 383 (417)
T 2ip4_A 318 -------KEGAAACVVLAAPGYPE--SPRKGIPLHVPEPP--EGVLVFH---AGTRREGGRLVSAGGRVLNVVGLGRDLK 383 (417)
T ss_dssp -------CSSEEEEEEEECTTTTT--SCCCCCBCBCCCCC--TTEEEEE---SSEEESSSSEEECSSEEEEEEEEESSHH
T ss_pred -------cCCcEEEEEEeCCCCCC--CCCCCCcccccCCC--CCeEEEE---CceEeeCCeEEecCCcEEEEEEEcCCHH
Confidence 12688999998876433 466776 6555432 6765432 333221 123345899999999999
Q ss_pred HHHHHHHHhhcceEEec
Q 000086 505 LAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 505 eA~~~l~~AL~el~I~G 521 (2304)
+|++++.+++++++++|
T Consensus 384 ~a~~~~~~~~~~i~~~~ 400 (417)
T 2ip4_A 384 EALERAYAYIPQVGFPG 400 (417)
T ss_dssp HHHHHHHHHGGGSBCTT
T ss_pred HHHHHHHHHHhcCccCC
Confidence 99999999999999998
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=372.46 Aligned_cols=336 Identities=14% Similarity=0.119 Sum_probs=268.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
|+||+|+|+|+.+.+++.+++++||+++ .. | ++++. ..+ +
T Consensus 1 Mk~igilGgGqlg~m~~~aa~~lG~~v~-----------~~--~--~~a~~-------~~~----------~-------- 40 (355)
T 3eth_A 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVW-----------PV--G--LDAEP-------AAV----------P-------- 40 (355)
T ss_dssp CCEEEEESCSHHHHHHHHHHGGGTCEEE-----------EE--C--TTCCG-------GGC----------C--------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------CC--C--CCCCc-------eEE----------c--------
Confidence 5789999999999999999999999873 22 2 23322 011 1
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
.++|+|+|++++.+.+ +.+.|++.| ++||++++++.++||..+|++++++|||+|||..
T Consensus 41 --l~~d~it~e~e~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~--------------- 99 (355)
T 3eth_A 41 --FQQSVITAEIERWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQL--------------- 99 (355)
T ss_dssp --CTTSEEEESCSCCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred --ccCCEEEECcCCcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEE---------------
Confidence 1899999999988754 888899887 7899999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCC-CCCcCeEEECC--HHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-GGGKGIRKVHN--DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-gGGkGIr~V~s--~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||+.| +||+|+++|++ .+|+.+++ . + +++||+|+++++|++
T Consensus 100 --------v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~---~----~-~vivEe~I~~~~Eis 163 (355)
T 3eth_A 100 --------LAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC---Y----G-ECIVEQGINFSGEVS 163 (355)
T ss_dssp --------ECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG---T----T-TEEEEECCCCSEEEE
T ss_pred --------ECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh---h----C-CEEEEEccCCCcEEE
Confidence 6788889899999999999999985 78999999999 99988743 1 2 699999999889999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
|.+++|.+|++..+.. .+.+++.+.......|+ .+++++.+++.+.|.++++++||+|+++|||+++ ++++||+|+
T Consensus 164 v~v~~~~~G~~~~~p~-~e~~~~~g~~~~~~~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~--~~~~~v~Ei 239 (355)
T 3eth_A 164 LVGARGFDGSTVFYPL-THNLHQDGILRTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAMECFVT--PQGLLINEL 239 (355)
T ss_dssp EEEEECTTSCEEECCC-EEEEEETTEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEE
T ss_pred EEEEEcCCCCEEEECC-EEEEeeCCeEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEe
Confidence 9999999999876533 23455555433334455 4899999999999999999999999999999999 578999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~ 444 (2304)
|||+++++++|+.++|+|+++.++++++|.|++.+ ...++++.+
T Consensus 240 npR~~~sg~~t~~~~~~s~fe~~~ra~~G~pl~~~------------------------------------~~~~~~~m~ 283 (355)
T 3eth_A 240 APRVHNSGHWTQNGASISQFELHLRAITDLPLPQP------------------------------------VVNNPSVMI 283 (355)
T ss_dssp ESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCCCC------------------------------------CCCSCEEEE
T ss_pred eCCCCCCccEEeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccCceEEE
Confidence 99999999999999999999999999999998631 112346677
Q ss_pred EEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 445 RVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 445 RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
.|..++ + ... +...|++.+.+. |... .-...+|||.+.|+|.++|++++..+.+.+
T Consensus 284 nilg~~---------~-~~~--~~~~p~~~~~~y---gk~~--r~~rkmGhv~~~~~~~~~~~~~~~~~~~~~ 339 (355)
T 3eth_A 284 NLIGSD---------V-NYD--WLKLPLVHLHWY---DKEV--RPGRKVGHLNLTDSDTSRLTATLEALIPLL 339 (355)
T ss_dssp EEESCC---------C-CGG--GGGSTTCEEEEC---CCCC--CTTCEEEEEEEECSCHHHHHHHHHHHGGGS
T ss_pred EEecch---------H-HHH--HHhCCCCEEEEc---CCCC--CCCCeeEEEEEEcCCHHHHHHHHHHHHHHh
Confidence 777654 1 111 222344433221 1111 123459999999999999999999998776
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=372.36 Aligned_cols=295 Identities=18% Similarity=0.203 Sum_probs=254.2
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
.+||||+|+|.++..++++++++||+++ +. |.+.+++..++||+.+.. +|.|.+.+.+++
T Consensus 14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi-----------~~--d~~~~~~~~~~ad~~~~~-------~~~d~~~l~~~~ 73 (389)
T 3q2o_A 14 GKTIGIIGGGQLGRMMALAAKEMGYKIA-----------VL--DPTKNSPCAQVADIEIVA-------SYDDLKAIQHLA 73 (389)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTTTTCSEEEEC-------CTTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchHHhCCceEec-------CcCCHHHHHHHH
Confidence 4699999999999999999999999985 33 455677888999998874 678899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
++ +|+|.++++ ..+..+.+.|++.|+ +||+++++..+.||..++++++++|||+|+|..
T Consensus 74 ~~--~dvI~~~~e--~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 132 (389)
T 3q2o_A 74 EI--SDVVTYEFE--NIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRL--------------- 132 (389)
T ss_dssp HT--CSEEEESCC--CCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred Hh--CCEeeeccc--cccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE---------------
Confidence 76 688876544 445567788888885 889999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCC-CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG-GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG-GkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
+.+.+++.++++++|||+||||+.|++ |+|+++|++.+|+.++++.+. +.+++||+|+++++|++|.
T Consensus 133 --------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~g~~E~~v~ 200 (389)
T 3q2o_A 133 --------VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN----AAECILEKWVPFEKEVSVI 200 (389)
T ss_dssp --------ESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH----HSCEEEEECCCCSEEEEEE
T ss_pred --------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecccCceEEEEE
Confidence 788999999999999999999999975 899999999999999998765 4589999999988999999
Q ss_pred EEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc
Q 000086 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2304)
Q Consensus 287 vl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2304)
++.|.+|++..+...++ +++.+.......|+. ++++..+++.+.+.++++++||+|++++||++++ +|++||+|+||
T Consensus 201 ~~~~~~G~~~~~~~~e~-~~~~g~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg~~~viEiNp 277 (389)
T 3q2o_A 201 VIRSVSGETKVFPVAEN-IHVNNILHESIVPAR-ITEELSQKAIAYAKVLADELELVGTLAVEMFATA-DGEIYINELAP 277 (389)
T ss_dssp EEECTTCCEEECCCEEE-EEETTEEEEEEESCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEES
T ss_pred EEEcCCCCEEEecCeee-EEcCCceEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCCEEEEEeeC
Confidence 99998898877654432 233222222345765 8899999999999999999999999999999984 67899999999
Q ss_pred CCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 367 RlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
|++.+.+++..++|+|+++.++++++|.|++.
T Consensus 278 R~~~s~~~~~~~~g~~~~~~~~r~~lg~~l~~ 309 (389)
T 3q2o_A 278 RPHNSGHYTQDACETSQFGQHIRAICNLPLGE 309 (389)
T ss_dssp SCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCC
T ss_pred CCCCchhHHHHHcCCCHHHHHHHHHcCCCCCC
Confidence 99999888999999999999999999999863
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=382.94 Aligned_cols=383 Identities=16% Similarity=0.212 Sum_probs=280.0
Q ss_pred CccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
|.+||||+|+|.....+++.+ +++|++++ ++ .+ + .+... ..++ ...++. +|.|.+.|++
T Consensus 23 m~~~IlIlG~g~r~~al~~~~a~~~g~~~v---------~~-~~-~--~~~~~-~~~~-~~~~~~-----~~~d~~~l~~ 82 (452)
T 2qk4_A 23 MAARVLIIGSGGREHTLAWKLAQSHHVKQV---------LV-AP-G--NAGTA-CSEK-ISNTAI-----SISDHTALAQ 82 (452)
T ss_dssp CSEEEEEEECSHHHHHHHHHHTTCTTEEEE---------EE-EE-C--CGGGS-BSSS-EEECCC-----CSSCHHHHHH
T ss_pred cCcEEEEECCCHHHHHHHHHHHhcCCCCEE---------EE-EC-C--Chhhh-hhcc-cccccc-----CCCCHHHHHH
Confidence 567999999997555555554 55676643 22 22 1 12222 3344 323432 5678999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+|++.++|+|+|+.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 83 ~~~~~~~d~V~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 148 (452)
T 2qk4_A 83 FCKEKKIEFVVVGPEAPL-AAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKA------------- 148 (452)
T ss_dssp HHHHHTCCEEEECSSHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHHcCCCEEEECCcHHH-HHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 999999999999844311 125778888899999999999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~ 280 (2304)
+.+.+++.++++++||| +||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++|
T Consensus 149 ----------~~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G- 217 (452)
T 2qk4_A 149 ----------FTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG- 217 (452)
T ss_dssp ----------ESSHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-
T ss_pred ----------ECCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-
Confidence 67889999999999999 9999999999999999999999999998875421 1468999999985
Q ss_pred ceeeEEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHHH-HHHHHHHHHC-----Cc
Q 000086 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLE-QAARRLAKCV-----NY 342 (2304)
Q Consensus 281 reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m~-e~A~rlakal-----Gy 342 (2304)
+|++|.++.|+. .++.+. .+++++++.+ ..|++.+++++.+++. +.+.++++++ +|
T Consensus 218 ~E~sv~~~~dG~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~ 291 (452)
T 2qk4_A 218 EEVSCLCFTDGK-TVAPMP-----PAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPY 291 (452)
T ss_dssp EEEEEEEEECSS-CEEECC-----CBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCC
T ss_pred CeEEEEEEECCC-EEEEcc-----eeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 899999998632 244432 2344444332 2577768888888886 6777777664 68
Q ss_pred eeeeEEEEEEEccCCcEEEEEeccCCCCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccc
Q 000086 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTS 421 (2304)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~ 421 (2304)
+|++++||++++ +| +||+|+|||+++... .....+|+|+++.+++++.|. ++.
T Consensus 292 ~G~~~ve~~~~~-~g-~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~----------------------- 345 (452)
T 2qk4_A 292 TGILYAGIMLTK-NG-PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCT----------------------- 345 (452)
T ss_dssp CEEEEEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGG-----------------------
T ss_pred eeEEEEEEEEeC-CC-cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCc-----------------------
Confidence 899999999993 45 999999999997543 244567999999999999985 321
Q ss_pred ccccCCCccccCCCCCceE-EEEEEEccCCCCCCCCCCCC-ccccccccCCCcEEEEEeeeeCCcc----cccCCCccEE
Q 000086 422 VIATPFDFDQAESTRPKGH-CVAVRVTSEDPDDGFKPTSG-KVQELSFKSKPNVWAYFSVKSGGGI----HEFSDSQFGH 495 (2304)
Q Consensus 422 ~~~i~f~~~~~~~~~~~gh-ai~~RI~aEdp~~~f~P~~G-~i~~l~~~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~ 495 (2304)
..+.| ..++ +++++++++++.. .|..| .|..+.....|+++++. .|..+ ......++||
T Consensus 346 -~~~~~---------~~~~~a~~~~l~~~g~~~--~~~~g~~i~~l~~~~~~~v~~~~---~G~~~~~~~~~~~~~rv~~ 410 (452)
T 2qk4_A 346 -SLPVW---------LENHTALTVVMASKGYPG--DYTKGVEITGFPEAQALGLEVFH---AGTALKNGKVVTHGGRVLA 410 (452)
T ss_dssp -GCCCB---------CTTCEEEEEEEECTTTTS--SCCCSCBCBCHHHHHHTTCEEEE---SSEEEETTEEEECSSEEEE
T ss_pred -cccee---------cCCCcEEEEEEECCCCCC--CCCCCCcccCccccCCCCcEEEE---CcEEeeCCeEEecCCeEEE
Confidence 00111 1244 8899999886533 46667 46555322335665432 33322 1233456899
Q ss_pred EEEEeCCHHHHHHHHHHhhcceEEec
Q 000086 496 VFAFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 496 via~G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+++|+|+++|++++.++++.+.++|
T Consensus 411 v~~~g~~~~~a~~~~~~~~~~i~~~g 436 (452)
T 2qk4_A 411 VTAIRENLISALEEAKKGLAAIKFEG 436 (452)
T ss_dssp EEEEESSHHHHHHHHHHHHHHCBCTT
T ss_pred EEEecCCHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999998
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=363.87 Aligned_cols=294 Identities=15% Similarity=0.240 Sum_probs=246.7
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.+.++|||+|+|..+..++++++++|++++ +. |.++++++.+.||+++.. +|.|.+.+.+
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~vi-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~ 69 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVV-----------VL--DPSEDCPCRYVAHEFIQA-------KYDDEKALNQ 69 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTGGGSSEEEEC-------CTTCHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhCCEEEEC-------CCCCHHHHHH
Confidence 456899999999999999999999999985 33 455678888999998875 4688999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
++++ +|+|.++++. ........+++.+ .++|++++++.+.||..++++++++|||+|+|..
T Consensus 70 ~~~~--~dvi~~~~E~--~~~~~l~~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~------------- 130 (377)
T 3orq_A 70 LGQK--CDVITYEFEN--ISAQQLKLLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFIS------------- 130 (377)
T ss_dssp HHHH--CSEEEESSTT--SCHHHHHHHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHh--CCcceecccc--cCHHHHHHHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 9987 6888766422 2222456666665 5779999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+ ||+|+++|++.+|+.++++.+. ..++++|+|+++.+|++
T Consensus 131 ----------~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~i~g~~E~s 196 (377)
T 3orq_A 131 ----------VKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE----TSECVAEKYLNIKKEVS 196 (377)
T ss_dssp ----------ECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT----TSCEEEEECCCEEEEEE
T ss_pred ----------ECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCcEEEEccCCCCEEEE
Confidence 67778888999999999999999998 9999999999999999998875 36899999999889999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEe
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2304)
|.++.+..|++..+...++ .++.+.......|+. +++ .+++.+.|.++++++||+|+++|||++++ +|++||+|+
T Consensus 197 v~~~~~~~g~~~~~~~~e~-~~~~g~~~~~~~Pa~-l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~v~Ei 271 (377)
T 3orq_A 197 LTVTRGNNNQITFFPLQEN-EHRNQILFKTIVPAR-IDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQLYVNEI 271 (377)
T ss_dssp EEEEECGGGCEEECCCEEE-EEETTEEEEEEESCS-SCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEET-TCCEEEEEE
T ss_pred EEEEEeCCCCEEEECCEeE-EEECCEEEEEECCCC-CCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 9999887788877644332 222222223346775 555 88999999999999999999999999994 688999999
Q ss_pred ccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 365 NpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
|||++++..+|...+++++++.+++.++|.|++
T Consensus 272 npR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl~ 304 (377)
T 3orq_A 272 APRPHNSGHYSIEACDYSQFDTHILAVTGQSLP 304 (377)
T ss_dssp ESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCC
T ss_pred eCCcCCCCcEeehhcCCCHHHHHHHHHcCCCCC
Confidence 999999888887889999999999999999986
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=368.08 Aligned_cols=369 Identities=17% Similarity=0.125 Sum_probs=273.3
Q ss_pred ccEEEEECchHHHHHHH-HHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFI-RSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iI-rsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
.+||||+|+|..-..++ ..++++| +++ +++. .+....+|+. + |.+.|+++
T Consensus 15 ~~~vlviG~Ggr~~a~a~~~a~~~g-~v~-----------~~~~-----np~~~~~d~~--i----------d~~~l~~~ 65 (412)
T 1vkz_A 15 AVRVHILGSGGREHAIGWAFAKQGY-EVH-----------FYPG-----NAGTKRDGTN--H----------PYEGEKTL 65 (412)
T ss_dssp -CEEEEEECSHHHHHHHHHHHHTTC-EEE-----------EEEC-----CTTGGGTSEE--C----------CCCTHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHhCCC-CEE-----------EECC-----Chhhhccccc--C----------CHHHHHHH
Confidence 45899999885444433 3457777 664 3322 3456678876 2 35789999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|+|++| +|++.++..++..+. ++||++++++.++||..++++++++|||+|+|..
T Consensus 66 ~~~~~~d~V~~~----~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 126 (412)
T 1vkz_A 66 KAIPEEDIVIPG----SEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEV-------------- 126 (412)
T ss_dssp HTSCSSCEECCS----SGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE--------------
T ss_pred HHHcCCCEEEEC----CcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE--------------
Confidence 999999999996 455556677777777 8899999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
+++.+++.++++++|||+||||..|+||+|+++|+|.+|+.++++++.... ...+++||+|++ ++|
T Consensus 127 ---------~~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~-G~E 196 (412)
T 1vkz_A 127 ---------AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA-GNE 196 (412)
T ss_dssp ---------ESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC-SEE
T ss_pred ---------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc-CcE
Confidence 788999999999999999999999999999999999999999999886532 123899999998 589
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccc---e-----EEEeCCCCCCCHHHHHHHHHHHHHHHHHC-----CceeeeEEE
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQ---K-----IIEEGPITVAPLETVKKLEQAARRLAKCV-----NYVGAATVE 349 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~q---K-----iieeaPa~~l~~e~~~~m~e~A~rlakal-----Gy~Ga~tVE 349 (2304)
++|++++|+ +.+......+..++.+. + .....|++ +++++.+++.+.+.++++++ +|+|++++|
T Consensus 197 ~sv~~~~dg--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve 273 (412)
T 1vkz_A 197 LSAMAVVNG--RNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLG 273 (412)
T ss_dssp EEEEEEEET--TEEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred EEEEEEECC--CEEEEeeeeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999975 43333332233333221 1 12456888 89999999999999999999 899999999
Q ss_pred EEEEccCCcEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCC
Q 000086 350 YLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFD 428 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~ 428 (2304)
|++++ +| +||+|+|||+++. |+.++..+|+|+.+.+++++.|. ++.+ .|
T Consensus 274 ~~~~~-~g-~~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g~-l~~~--------------------------~~- 323 (412)
T 1vkz_A 274 LMLHD-GD-PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG-KMEP--------------------------VE- 323 (412)
T ss_dssp EEEET-TE-EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTS-CCCC--------------------------CC-
T ss_pred EEEEC-CC-cEEEEEecCCCCCcceeehhhcCCCHHHHHHHHhcCC-Cccc--------------------------cc-
Confidence 99994 44 9999999999965 55677779999999999999884 3210 11
Q ss_pred ccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCCccEEEEEEeCCHHHHH
Q 000086 429 FDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALAI 507 (2304)
Q Consensus 429 ~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA~ 507 (2304)
..++++ +++.++++. .+.|.+|.+..+..+. .++.+ +.. .++.+.. ..+++|||+++|+|+++|+
T Consensus 324 --------~~~~a~-~~~l~~~~~-~~~~~~g~~i~l~~~~--~v~~~-g~~~~~~~~~~-~~~~vg~v~~~g~~~~ea~ 389 (412)
T 1vkz_A 324 --------PRGFAV-DVVLAARGY-PDAPEKGKEITLPEEG--LIFFA-GVAEKDGKLVT-NGGRVLHCMGTGETKEEAR 389 (412)
T ss_dssp --------CCSEEE-EEEEECTTT-TTSCCCCCBCBCCSSC--CEEES-SEEEETTEEEE-CSSEEEEEEEEESSHHHHH
T ss_pred --------cCCeEE-EEEEecCCC-CCCCCCCCEeeeCCCC--cEEEC-cccccCCeEEe-CCCcEEEEEEeCCCHHHHH
Confidence 124665 445554321 2346677643333321 34321 221 2232333 3567999999999999999
Q ss_pred HHHHHhhcceEEec
Q 000086 508 ANMVLGLKEIQIRG 521 (2304)
Q Consensus 508 ~~l~~AL~el~I~G 521 (2304)
+++.++++.+.++|
T Consensus 390 ~~~~~~~~~i~~~g 403 (412)
T 1vkz_A 390 RKAYELAEKVHFEG 403 (412)
T ss_dssp HHHHHHHHHCBCTT
T ss_pred HHHHHHhcceeeCC
Confidence 99999999999998
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=363.09 Aligned_cols=376 Identities=19% Similarity=0.233 Sum_probs=270.4
Q ss_pred ccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
.+||||+|+|.....+++++ +++|++++ + +.+. +......+| . ++. ++.|.+.|+++
T Consensus 21 ~~~iliiG~g~r~~a~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~ 78 (451)
T 2yrx_A 21 HMNVLVIGRGGREHAIAWKAAQSPLVGKL---------Y-VAPG----NPGIADVAE-L--VHI-----DELDIEALVQF 78 (451)
T ss_dssp SEEEEEEECSHHHHHHHHHHHTCTTEEEE---------E-EEEC----CTTGGGTSE-E--CCC-----CTTCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEE---------E-EECC----ChhhhhhCc-e--ecc-----CCCCHHHHHHH
Confidence 36899999996555555544 55777653 2 2222 223344455 3 322 45789999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|++.++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 79 ~~~~~~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 143 (451)
T 2yrx_A 79 AKQQAIDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAA-------------- 143 (451)
T ss_dssp HHHTTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred HHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEE--------------
Confidence 99999999999854321 134678888999999999999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~re 282 (2304)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|
T Consensus 144 ---------~~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E 213 (451)
T 2yrx_A 144 ---------FTSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EE 213 (451)
T ss_dssp ---------ESCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EE
T ss_pred ---------ECCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cE
Confidence 778999999999999999999999999999999999999999998876431 2468999999985 89
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHH-HHHHHHHHHHC-----Ccee
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVG 344 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m-~e~A~rlakal-----Gy~G 344 (2304)
++|.++.| |+.+... ...++++++.+ ..|++.+++++.+++ .+.+.++++++ +|.|
T Consensus 214 ~sv~~~~d--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G 287 (451)
T 2yrx_A 214 FSFMAFVN--GEKVYPL----AIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLG 287 (451)
T ss_dssp EEEEEEEE--TTEEEEC----CCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred EEEEEEEc--CCEEEEe----eeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 99999986 4444332 22344444432 257766888888888 66777777754 7899
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccc
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVI 423 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~ 423 (2304)
++++||++++ +| +||+|+|||+++.. ...+..+|+|+++++++++.|.+.+ +
T Consensus 288 ~~~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~~~~-~------------------------ 340 (451)
T 2yrx_A 288 VLYAGLMATA-NG-PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGKELE-L------------------------ 340 (451)
T ss_dssp EEEEEEEEET-TE-EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTCCCC-C------------------------
T ss_pred EEEEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCCCCC-c------------------------
Confidence 9999999993 44 99999999998764 3445578999999999999996431 0
Q ss_pred ccCCCccccCCCCCceEEEEEEEc----cCCCCCCCCCCCCccccccccCCCcEEEEE-eee-eCCcccccCCCccEEEE
Q 000086 424 ATPFDFDQAESTRPKGHCVAVRVT----SEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVF 497 (2304)
Q Consensus 424 ~i~f~~~~~~~~~~~ghai~~RI~----aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~vi 497 (2304)
.+ ..++++..++. +++|..++. ..| +.++ . |++.++. +.. .++. ......++|||+
T Consensus 341 --~~---------~~~~~~~~~l~~~g~p~~~~~g~~-i~~-~~~~---~-~~~~v~~~G~~~~~~~-~~~~~~rvg~v~ 402 (451)
T 2yrx_A 341 --EW---------TDEAVLGVVLAAKGYPGAYERGAE-IRG-LDRI---S-PDALLFHAGTKREGGA-WYTNGGRVLLLA 402 (451)
T ss_dssp --CB---------CSSEEEEEEEEETTTTSSCCCCCE-EBC-GGGS---C-TTSEEEESSEEEETTE-EEECSSEEEEEE
T ss_pred --cc---------cCCceEEEEEecCCcCCCCCCCCc-CcC-cccc---C-CCCEEEeCcccccCCe-EEcCCCeEEEEE
Confidence 01 01345555553 334444431 122 2222 2 5554332 111 1111 122346799999
Q ss_pred EEeCCHHHHHHHHHHhhcceEEec
Q 000086 498 AFGESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 498 a~G~~reeA~~~l~~AL~el~I~G 521 (2304)
+.|+|+++|++++.++++.+.++|
T Consensus 403 ~~g~~~~ea~~~~~~~~~~i~~~~ 426 (451)
T 2yrx_A 403 AKGETLAKAKEKAYEQLAAIDCDG 426 (451)
T ss_dssp EEESSHHHHHHHHHHHHTTCBCTT
T ss_pred EEeCCHHHHHHHHHHHhhccccCC
Confidence 999999999999999999999998
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=355.82 Aligned_cols=385 Identities=18% Similarity=0.179 Sum_probs=283.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA 127 (2304)
+.||||+|+|.-...+++++++.+. +..+. +.+ .|+.....++ ...++ -++.|.+.|+++|
T Consensus 3 ~mkvlviG~ggre~ala~~l~~s~~--------v~~v~-~~p----gn~g~~~~~~-~~~~~-----~~~~d~~~l~~~a 63 (431)
T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPL--------ADKIY-VAP----GNAGTALEPT-LENVD-----IAATDIAGLLAFA 63 (431)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTT--------EEEEE-EEE----CCHHHHHCTT-CEECC-----CCTTCHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCC--------CCEEE-EEC----CCHHHhhhcc-cceec-----CCcCCHHHHHHHH
Confidence 4689999999877788888887642 11122 232 2333333333 21122 1457899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 128 ~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 64 ~~~~id~vv~g~e~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~--------------- 127 (431)
T 3mjf_A 64 QSHDIGLTIVGPEAPLV-IGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQN--------------- 127 (431)
T ss_dssp HHTTEEEEEECSHHHHH-TTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEE---------------
T ss_pred HHhCcCEEEECCchHHH-HHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEe---------------
Confidence 99999999998553221 34788999999999999999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~rei 283 (2304)
+++.+++.++++++|||+||||..|+||+||++++|.+|+.++++.+... ..+.+++||+|++| +|+
T Consensus 128 --------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~ 198 (431)
T 3mjf_A 128 --------FTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEA 198 (431)
T ss_dssp --------ESCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEE
T ss_pred --------eCCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEE
Confidence 78899999999999999999999999999999999999999999987632 22468999999986 899
Q ss_pred eEEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHHHHH----HHHHHHHCC--ceee
Q 000086 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLEQA----ARRLAKCVN--YVGA 345 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m~e~----A~rlakalG--y~Ga 345 (2304)
+|.++.|+. +++.+.. .++|+++.+ ..|++.++++..+++.+. +.+.++++| |+|+
T Consensus 199 sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~ 272 (431)
T 3mjf_A 199 SFIVMVDGE-NVLPMAT-----SQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGF 272 (431)
T ss_dssp EEEEEEESS-CEEECCC-----BEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEEcCC-EEEEEEe-----eEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999874 6665432 344555533 458877899999888876 667776655 5899
Q ss_pred eEEEEEEEccCCcEEEEEeccCCCCCcceeh---hhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000086 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTE---WIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2304)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqgehpvtE---~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2304)
+++||++++ +|++||||+|||++ +|.++ ..+|+||++++++++.|....
T Consensus 273 ~~ve~~~~~-~g~~~viEiN~R~G--~~~~~~i~~~~g~dl~~~~~~~~~G~l~~------------------------- 324 (431)
T 3mjf_A 273 LYAGLMISA-DGQPKVIEFNCRFG--DPETQPIMLRMRSDLVELCLAGTQGKLNE------------------------- 324 (431)
T ss_dssp EEEEEEECT-TSCEEEEEECGGGS--TTTHHHHHHHBCSCHHHHHHHHHTTCGGG-------------------------
T ss_pred EEEEEEEeC-CCCeEEEEEecCCC--CcHHHHHHHHHCCCHHHHHHHHHcCCCCC-------------------------
Confidence 999999994 56699999999997 55554 789999999999999997421
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeee-CC-cccccCCCccEEEEEE
Q 000086 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKS-GG-GIHEFSDSQFGHVFAF 499 (2304)
Q Consensus 423 ~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~~-G~-~i~~~~Ds~~g~via~ 499 (2304)
..+.|+ +....+.+++..-|++++..+. .|..+.-...+++.++. ++.. ++ .+ ....+++++|++.
T Consensus 325 ~~~~~~-----~~~a~~vv~a~~gyp~~~~~g~-----~i~~~~~~~~~~~~~~~ag~~~~~~~~~-~~~ggRv~~v~~~ 393 (431)
T 3mjf_A 325 KTSDWD-----ERPSLGVVLAAGGYPADYRQGD-----VIHGLPQQEVKDGKVFHAGTKLNGNHEV-VTNGGRVLCVTAL 393 (431)
T ss_dssp CCCCBC-----SSCEEEEEEEETTTTSCCCCCC-----BCBCCCSSCBTTEEEEESSEEECTTSCE-EECSSEEEEEEEE
T ss_pred CCcccc-----CCcEEEEEecCCCcCccCCCCC-----EeeCCccccCCCcEEEEeeeEecCCCEE-EecCCeEEEEEEe
Confidence 112221 1112233334444555444332 22222211115665442 2322 22 33 2346789999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|.++|+++++.+++.+++.|
T Consensus 394 g~~~~~A~~~a~~~~~~i~~~~ 415 (431)
T 3mjf_A 394 GETVAQAQQYAYQLAEGIQWEG 415 (431)
T ss_dssp CSSHHHHHHHHHHHHTTCBCTT
T ss_pred cCCHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999998
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=360.44 Aligned_cols=374 Identities=19% Similarity=0.226 Sum_probs=274.1
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsa-r~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
||||+|+|.....+++++ +++|++++ + +.+. +....+.+| . ++. ++.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~~~ 59 (422)
T 2xcl_A 2 NVLIIGKGGREHTLAWKAAQSSLVENV---------F-AAPG----NDGMAASAQ-L--VNI-----EESDHAGLVSFAK 59 (422)
T ss_dssp EEEEEECSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CGGGTTTCE-E--CCC-----CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE---------E-EeCC----Chhhhhhcc-c--ccc-----CcCCHHHHHHHHH
Confidence 799999996666666655 45787764 2 2222 233345566 3 332 4678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (422)
T 2xcl_A 60 QNQVGLTIVGPEVPL-IEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYET---------------- 122 (422)
T ss_dssp HTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCcHHH-HHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999854321 124678888999999999999999999999999999999999999865
Q ss_pred ccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000086 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reie 284 (2304)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (422)
T 2xcl_A 123 -------FTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFS 194 (422)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEE
Confidence 778999999999999999999999999999999999999999999886421 1368999999985 8999
Q ss_pred EEEEEcCCCCEEEeeccccccccccceEEE------------eCCCCCCCHHHHHHHH-HHHHHHHHHC-----Cceeee
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLE-QAARRLAKCV-----NYVGAA 346 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~qKiie------------eaPa~~l~~e~~~~m~-e~A~rlakal-----Gy~Ga~ 346 (2304)
|.++.|+ +.+... ...++|+++.+ ..|++.+++++.+++. +.+.++++++ +|.|++
T Consensus 195 v~~~~dG--~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 195 LMAFVKG--EKVYPM----VIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp EEEEEET--TEEEEC----CCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEcC--CEEEec----ceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999874 443322 22333444332 3577668888888884 4777777664 789999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2304)
++||++++ +| +||+|+|||+++.. ...+..+|+|+.+.+++++.|.... +
T Consensus 269 ~vd~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~l~~-~-------------------------- 319 (422)
T 2xcl_A 269 YAGLMLTE-NG-SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDKEVD-L-------------------------- 319 (422)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTCCCC-C--------------------------
T ss_pred EeeEEEeC-CC-cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcCCcCc-c--------------------------
Confidence 99999993 44 99999999998764 3455679999999999999985321 0
Q ss_pred CCCccccCCCCCceEEEEEEEccC----CCCCCCCCCCCccccccccCCCcEEEEE-eee-eCCcccccCCCccEEEEEE
Q 000086 426 PFDFDQAESTRPKGHCVAVRVTSE----DPDDGFKPTSGKVQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVFAF 499 (2304)
Q Consensus 426 ~f~~~~~~~~~~~ghai~~RI~aE----dp~~~f~P~~G~i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~via~ 499 (2304)
.+ ..++++.+++.++ +|..++ +..| +.++ . |++.++. +.. .++...... .++|||+++
T Consensus 320 ~~---------~~~~~~~~~~~~~g~~~~~~~g~-~i~~-~~~~---~-~~~~~~~~g~~~~~~~~~~~~-~r~~~v~~~ 383 (422)
T 2xcl_A 320 RW---------KDTAAVSVVLASEGYPESYAKGT-PIGS-LAAE---T-EQVVVFHAGTKAEGGEFVTNG-GRVANVTAF 383 (422)
T ss_dssp CB---------CSCEEEEEEEEETTTTSCCCSCC-BCCC-CCCC---S-SSEEEEESSEEECSSSEEECS-SEEEEEEEE
T ss_pred cc---------cCCceEEEEEECCCCCCCCCCCC-cccC-cccC---C-CCcEEEEeeeEeeCCEEEeCC-CceEEEEEE
Confidence 01 0134555555443 333333 2223 2222 2 5665432 111 112333333 458999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|+++|+++++++++.+.++|
T Consensus 384 g~~~~~a~~~~~~~~~~i~~~g 405 (422)
T 2xcl_A 384 DETFEAARDRVYKAVDEIFKPG 405 (422)
T ss_dssp ESSHHHHHHHHHHHHHHHCCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999988
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=354.69 Aligned_cols=384 Identities=16% Similarity=0.145 Sum_probs=285.7
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+..||||+|+|.-...+++++++.+. +..+.+ .+ ..+....+++.+.+ ++.|.+.|+++
T Consensus 20 ~~m~ilvlG~ggre~ala~~l~~s~~--------v~~v~~-~p-----gn~g~~~~~~~~~i-------~~~d~~~l~~~ 78 (442)
T 3lp8_A 20 GSMNVLVIGSGGREHSMLHHIRKSTL--------LNKLFI-AP-----GREGMSGLADIIDI-------DINSTIEVIQV 78 (442)
T ss_dssp CCEEEEEEECSHHHHHHHHHHTTCTT--------EEEEEE-EE-----CCGGGTTTSEECCC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC--------CCEEEE-EC-----CChHHhhccceeec-------CcCCHHHHHHH
Confidence 34589999999888888888877632 222222 22 22444456665544 56789999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
|+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 79 a~~~~id~vv~g~E~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~-------------- 143 (442)
T 3lp8_A 79 CKKEKIELVVIGPETPLM-NGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGY-------------- 143 (442)
T ss_dssp HHHTTCCEEEECSHHHHH-TTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEE--------------
T ss_pred HHHhCCCEEEECCcHHHH-HHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEE--------------
Confidence 999999999998433211 24678899999999999999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~i~VEeyI~g~re 282 (2304)
+++.+++.++++++|||+||||..|+||+|+++++|.+|+.++++++... ..+.+++||||++| +|
T Consensus 144 ---------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E 213 (442)
T 3lp8_A 144 ---------FVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KE 213 (442)
T ss_dssp ---------ESSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EE
T ss_pred ---------ECCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cE
Confidence 78899999999999999999999999999999999999999999988743 11368999999985 89
Q ss_pred eeEEEEEcCCCCEEEeeccccccccccceE------------EEeCCCCCCCHHHHHHHHHH----HHHHHHHCCc--ee
Q 000086 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQA----ARRLAKCVNY--VG 344 (2304)
Q Consensus 283 ieVqvl~D~~G~vi~l~~RdcSvqrr~qKi------------ieeaPa~~l~~e~~~~m~e~----A~rlakalGy--~G 344 (2304)
++|.++.|+. +++.+.. .++|++. ....|++.++++..+++.+. +.++++++|+ +|
T Consensus 214 ~sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G 287 (442)
T 3lp8_A 214 ISFFTLVDGS-NPVILGV-----AQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRG 287 (442)
T ss_dssp EEEEEEEESS-CEEEEEE-----EEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred EEEEEEECCC-eEEEeEE-----eEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 9999999864 4544321 2233333 23458877899999999887 8888888877 89
Q ss_pred eeEEEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccc
Q 000086 345 AATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVI 423 (2304)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~ 423 (2304)
++++||+++ .+++||||+|||+++ +++.+...+|.|+.+++++++.|.....
T Consensus 288 ~~~ve~~~~--~~g~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~l~~~------------------------- 340 (442)
T 3lp8_A 288 LLFAGIIIK--KNEPKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLGNE------------------------- 340 (442)
T ss_dssp EEEEEEEEE--TTEEEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTCCSSC-------------------------
T ss_pred EEEEEEEEe--CCCeEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCCCCCC-------------------------
Confidence 999999999 345999999999995 5777777899999999999999974221
Q ss_pred ccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCC-cccccc-ccCCCcEEEEE-eeee-CCcccccCCCccEEEEEE
Q 000086 424 ATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG-KVQELS-FKSKPNVWAYF-SVKS-GGGIHEFSDSQFGHVFAF 499 (2304)
Q Consensus 424 ~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G-~i~~l~-~~s~~~V~~~~-~v~~-G~~i~~~~Ds~~g~via~ 499 (2304)
.+.|. .++++.+.+.+...- ..|..| .|..+. ....+++.++. +... .+.+ ....+++++|++.
T Consensus 341 ~~~~~---------~~~a~~vv~a~~gyp--~~~~~g~~i~g~~~~~~~~~~~~~~ag~~~~~~~~-~~~ggRv~~v~~~ 408 (442)
T 3lp8_A 341 SVELS---------KKAALCVVVASRGYP--GEYKKNSIINGIENIEKLPNVQLLHAGTRREGNNW-VSDSGRVINVVAQ 408 (442)
T ss_dssp CCCBC---------SCEEEEEEEEETTTT--SSCCSSCEEBSHHHHHTCSSEEEEESSEEEETTEE-EECSSEEEEEEEE
T ss_pred Cceec---------cCcEEEEEEccCCCC--CCCCCCCEeeCCcccccCCCcEEEEeeeeccCCeE-EecCCeEEEEEEe
Confidence 12221 133443333332200 012233 233332 23345665442 2222 2222 2345779999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000086 500 GESRALAIANMVLGLKEIQIRG 521 (2304)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2304)
|+|.++|+++++.+++.+++.|
T Consensus 409 g~~~~~A~~~a~~~~~~i~~~~ 430 (442)
T 3lp8_A 409 GENLASAKHQAYAALDLLDWPD 430 (442)
T ss_dssp ESSHHHHHHHHHHHHTTCBCTT
T ss_pred cCCHHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999998
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=357.58 Aligned_cols=255 Identities=17% Similarity=0.304 Sum_probs=201.0
Q ss_pred cccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCcchhHH--HHHHH-HHHHhHhhhCCCCCCCCcCcccccccccc
Q 000086 1527 CYDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSCEKCYL--QAFET-ALEQSWASQFPNMRPKDKALLKVTELKFA 1602 (2304)
Q Consensus 1527 ~yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~el~~~ 1602 (2304)
..++|+ +||.|||+|. .+|.+++..|+.+||.|+|...+. +.++. .+.++|. +...+....++|.|+
T Consensus 22 ~~~~~~--~l~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~r~~arerI~~L~D~gsF~-------El~~~~~~~~~l~f~ 92 (285)
T 2f9i_B 22 NNDVPA--GIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFT-------EFDKGMTSANPLDFP 92 (285)
T ss_dssp ----CC--SSEEECTTTCCEEEHHHHHHTTTBCTTTCCBCCCCHHHHHHHTSCTTCCE-------EESTTCEECCTTCCT
T ss_pred ccCCCh--HHHHhhHhhCCccchhhhHHhcCcCCCCCCCCCCCHHHHHHHHccCCCcE-------EECCCcCcCCccccc
Confidence 347899 9999999987 777778899999999999932222 11111 1122222 222333333444443
Q ss_pred CCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEE
Q 000086 1603 DDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIY 1682 (2304)
Q Consensus 1603 ~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~ 1682 (2304)
.|..+|.+.++.+|.+++ ||++..++ +|++|+|++||++|++||+|+..++|+.|++++|.+.++|+|+
T Consensus 93 ----~y~~~l~~~~~~t~~~~a-vVtG~g~I------~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~ 161 (285)
T 2f9i_B 93 ----SYLEKIEKDQQKTGLKEA-VVTGTAQL------DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFIL 161 (285)
T ss_dssp ----THHHHHHHHHHHHCCSSS-EEEEEEEE------TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ----chhHHHHHHhhccCCCCe-EEEEEEEE------CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 244578777777777665 99999887 9999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccc
Q 000086 1683 LAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVEN 1762 (2304)
Q Consensus 1683 l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~ 1762 (2304)
|.+||||||| |++.+||||+ + +...+.+++ .
T Consensus 162 l~dsgGar~q--EGi~sl~q~a--------k-------i~~~l~~~s----------~---------------------- 192 (285)
T 2f9i_B 162 FSASGGARMQ--EGIISLMQMG--------K-------TSVSLKRHS----------D---------------------- 192 (285)
T ss_dssp EEEECSCCGG--GHHHHHHHHH--------H-------HHHHHHHHH----------H----------------------
T ss_pred EEeCCCcchh--hhhhhHhHHH--------H-------HHHHHHHHH----------c----------------------
Confidence 9999999998 9999999887 1 111122211 0
Q ss_pred cccccccccccccccccceEEEEEcCcccchhhh-hhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceee
Q 000086 1763 LTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIM 1841 (2304)
Q Consensus 1763 l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAy-l~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~ 1841 (2304)
..+|+||++||+|+||++| +++++|+++|.+++.|+|+||+++++++|+++ ++++|++++|
T Consensus 193 ---------------~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~vi~~~~~~~~---~e~~~~Ae~~ 254 (285)
T 2f9i_B 193 ---------------AGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKL---PDDFQTAEFL 254 (285)
T ss_dssp ---------------TTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHH
T ss_pred ---------------CCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHHHHHHhcccc---hHhHhhHHHH
Confidence 1279999999999999755 48999999999999999999999999999998 7999999999
Q ss_pred cccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1842 ATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1842 ~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
..+|++|.+++++ +..+.++++|+|+.
T Consensus 255 ~~~G~iD~Iv~~~-e~r~~l~~~L~~l~ 281 (285)
T 2f9i_B 255 LEHGQLDKVVHRN-DMRQTLSEILKIHQ 281 (285)
T ss_dssp HHTTCCSEECCGG-GHHHHHHHHHHHTC
T ss_pred HhcCCccEEeChH-HHHHHHHHHHHHhh
Confidence 9999999999755 99999999999984
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=379.55 Aligned_cols=304 Identities=18% Similarity=0.279 Sum_probs=241.3
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~~-----------Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
..+||||+|+|.. +++++++++++||+++ .+..+.+..+.....||+.+..|
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi-----------~v~~np~~~s~~~~~ad~~~~~p------ 620 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 620 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-----------EECCCTTSSTTSTTSSSEEECCC------
T ss_pred cCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEE-----------EEecCCcccccccccccEEEecc------
Confidence 5679999999874 5788999999999985 33333333334456788877532
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
.+.+.++++++.+++|+|++++|.... ..++..|++.|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 621 --~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~--- 694 (1073)
T 1a9x_A 621 --VTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANAT--- 694 (1073)
T ss_dssp --CSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE---
T ss_pred --chhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceE---
Confidence 458999999999999999999875332 25788999999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEe 275 (2304)
+.+.+++.++++++||||||||+.|+||+||++|+|.+|+.++++.+....+..+++||+
T Consensus 695 --------------------~~s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEe 754 (1073)
T 1a9x_A 695 --------------------VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 754 (1073)
T ss_dssp --------------------CCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEB
T ss_pred --------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999999999999999999999999999999999999999999876554567999999
Q ss_pred eccccceeeEEEEEcCCCCEEEeeccccccccc--c-ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 276 yI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr--~-qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
|++|.+|++|++++|+.+ ++.....+ .+.+. | .......|+..++++..+++.+.+.++++++|++|.+++||++
T Consensus 755 fI~g~~E~~V~~l~d~~~-v~~~~i~e-~~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v 832 (1073)
T 1a9x_A 755 FLDDAVEVDVDAICDGEM-VLIGGIME-HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV 832 (1073)
T ss_dssp CCTTCEEEEEEEEECSSC-EEEEEEEE-ESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEECCe-EEEEeeEE-EEeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE
Confidence 999877999999998754 33221111 11111 1 1112334776689999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+ ++++||||+|||+++++|+++.++|+|++++++++++|.+++
T Consensus 833 ~--~~~~~viEvNpR~~~~~~~~~~~tGi~l~~~~~~~~~G~~l~ 875 (1073)
T 1a9x_A 833 K--NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLA 875 (1073)
T ss_dssp C--SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHHHTTCCHH
T ss_pred E--CCeEEEEEEECCCccHHHHHHHHHCcCHHHHHHHHHcCCCch
Confidence 7 789999999999999999999999999999999999999875
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=338.56 Aligned_cols=258 Identities=19% Similarity=0.245 Sum_probs=196.7
Q ss_pred cccCCCCCCCccccCCCc-ccchhhhhcccCccCCCCcc-----hhHHHHHHHHHHHhHhhhCCCCCCCCcCcccccccc
Q 000086 1527 CYDFPLVSTLASTCCNIR-SFFFSSFNLSISDCKSCSCE-----KCYLQAFETALEQSWASQFPNMRPKDKALLKVTELK 1600 (2304)
Q Consensus 1527 ~yd~p~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 1600 (2304)
..++|+ +||.|||+|. .+|.+++..|+++||.|+|. ..|..++ .+.++| .+...++...++|.
T Consensus 16 ~~~~~~--~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~~arerI~~L--~D~gsF-------~E~~~~~~~~~~~~ 84 (304)
T 2f9y_B 16 KASIPE--GVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSL--LDEGSL-------VELGSELEPKDVLK 84 (304)
T ss_dssp ---------CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHH--SCSSCC-------EECSCSCCCCCSSC
T ss_pred cCCCCH--HHHHhhhhccchhhHHHHHHHhCCCCCCCCCCCCCHHHHHHHH--CCCCcE-------EEECCccccCCccc
Confidence 347899 9999999987 78888899999999999992 2333322 122223 33334444455666
Q ss_pred ccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCE
Q 000086 1601 FADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPL 1680 (2304)
Q Consensus 1601 ~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~ 1680 (2304)
|.+ +..|..+|.+.++++|.+++ ||++..++ +|++|+|++||+||+|||||+...+|+.+++++|.+.++|+
T Consensus 85 f~d-~~~y~~~l~~~~~~t~~~~a-vvtG~g~i------~G~~V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~~~Pv 156 (304)
T 2f9y_B 85 FRD-SKKYKDRLASAQKETGEKDA-LVVMKGTL------YGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPL 156 (304)
T ss_dssp CSS-GGGTC------CCSSCCSSS-EEEEECEE------TTEECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCE
T ss_pred ccc-ccChHHHHHHHHhccCCCCc-EEEEEEEE------CCEEEEEEEEcCccccCCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 644 44577789999988888765 99999876 99999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccc
Q 000086 1681 IYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGV 1760 (2304)
Q Consensus 1681 I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gv 1760 (2304)
|+|.++|||||+ |++.+++|++ .++. .+.++
T Consensus 157 I~l~~sGGarlq--eg~~~l~~~~------------~i~~---al~~~-------------------------------- 187 (304)
T 2f9y_B 157 ICFSASGGARMQ--EALMSLMQMA------------KTSA---ALAKM-------------------------------- 187 (304)
T ss_dssp EEEEEESSBCGG--GTHHHHHHHH------------HHHH---HHHHH--------------------------------
T ss_pred EEEECCCCcCHH--HHHHHHHHHH------------HHHH---HHHHH--------------------------------
Confidence 999999999998 7765554433 1110 00000
Q ss_pred cccccccccccccccccccceEEEEEcCcccchh-hhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcce
Q 000086 1761 ENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIG-AYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPK 1839 (2304)
Q Consensus 1761 e~l~~SG~iag~~s~ay~~iptis~vtg~t~G~g-Ayl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~ 1839 (2304)
+ -..+|+|++|+|+|+||| ++++++||++||.+++.|+++||+++.+++|+++ ++++||++
T Consensus 188 ---~------------~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~Gp~~i~~~ig~~l---~~~~~~Ae 249 (304)
T 2f9y_B 188 ---Q------------ERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PPGFQRSE 249 (304)
T ss_dssp ---H------------HTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHH
T ss_pred ---h------------cCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEeecHHHHHHHhCccC---CcccCCHH
Confidence 0 013799999999999999 6668999999999999999999999999999987 58999999
Q ss_pred eecccCceEEEecCcHHHHHHHHHHHhcCCCC
Q 000086 1840 IMATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871 (2304)
Q Consensus 1840 i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~ 1871 (2304)
.+..+|++|.++++ .+..+.++++|+|+|..
T Consensus 250 ~~~~~Glvd~Vv~~-~el~~~l~~ll~~l~~~ 280 (304)
T 2f9y_B 250 FLIEKGAIDMIVRR-PEMRLKLASILAKLMNL 280 (304)
T ss_dssp HHGGGTCCSEECCH-HHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCccEEeCc-HHHHHHHHHHHHHhhcC
Confidence 99999999999965 68999999999999863
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=319.41 Aligned_cols=290 Identities=17% Similarity=0.196 Sum_probs=211.0
Q ss_pred cEEEEECchHHHHHHHHHHHHc-C-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTW-A-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~-G-y~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+||||+|+|.. ..+++++++. | ++++ ++ |.+.+++...++|+++.+|... +.+| ++.++++
T Consensus 5 ~~Ili~g~g~~-~~l~~~l~~~~~~~~v~-----------~~--d~~~~~~~~~~~d~~~~~~~~~-~~~~--~~~l~~~ 67 (331)
T 2pn1_A 5 PHLLITSAGRR-AKLVEYFVKEFKTGRVS-----------TA--DCSPLASALYMADQHYIVPKID-EVEY--IDHLLTL 67 (331)
T ss_dssp CEEEEESCTTC-HHHHHHHHHHCCSSEEE-----------EE--ESCTTCGGGGGSSSEEECCCTT-STTH--HHHHHHH
T ss_pred ceEEEecCCch-HHHHHHHHHhcCCCEEE-----------EE--eCCCcchhHHhhhceecCCCCC-ChhH--HHHHHHH
Confidence 58999998865 5677888876 5 5553 44 3345667778899999887432 2334 8999999
Q ss_pred HHHcCCCEEEeCCCcCCC-CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 127 AEMTRVDAVWPGWGHASE-IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SE-n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
|+++++|+|+|+++.... ...+.+.|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 68 ~~~~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------- 134 (331)
T 2pn1_A 68 CQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA------------- 134 (331)
T ss_dssp HHHHTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES-------------
T ss_pred HHHcCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe-------------
Confidence 999999999998763221 112356777789999999999999999999999999999999999653
Q ss_pred cCcccccccccCCHHHHHHHh--hccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 206 IPDDVYRQACVYTTEEAIASC--QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a--~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+++.++. +++|||+||||..|+||+|++++++.+|+.++++. ..+++||+|++| +|+
T Consensus 135 ------------~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~------~~~~lvee~i~G-~e~ 195 (331)
T 2pn1_A 135 ------------TMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK------NTDLIVQELLVG-QEL 195 (331)
T ss_dssp ------------SHHHHHHHHHTTSSCSCEEEEESBC-----------------------------CEEEEECCCS-EEE
T ss_pred ------------cHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh------CCCeEEEecCCC-cEE
Confidence 345555555 57999999999999999999999999999988764 358999999987 899
Q ss_pred eEEEEEc-CCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEE
Q 000086 284 EVQLLCD-QYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2304)
Q Consensus 284 eVqvl~D-~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfL 362 (2304)
+|.++.| .+|+++.+..+.+...+.. .....+.. ..+++.+.+.++++++||.|.+++||+.+ +|++||+
T Consensus 196 ~v~~~~d~~~G~~~~~~~~~~~~~~~g--~~~~~~~~-----~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g~~~~i 266 (331)
T 2pn1_A 196 GVDAYVDLISGKVTSIFIKEKLTMRAG--ETDKSRSV-----LRDDVFELVEHVLDGSGLVGPLDFDLFDV--AGTLYLS 266 (331)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEEEETT--EEEEEEEE-----CCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TTEEEEE
T ss_pred EEEEEEecCCCeEEEEEEEEEEEecCC--ceeEeEEe-----ccHHHHHHHHHHHHHhCCcceEEEEEEEc--CCCEEEE
Confidence 9999998 7788887665554322221 11222211 23678889999999999999999999965 7899999
Q ss_pred EeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 363 EINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
|+|||+++.+++ +..+|+|++++++++++|.+++
T Consensus 267 EiN~R~~g~~~~-~~~~G~~~~~~~~~~~~g~~~~ 300 (331)
T 2pn1_A 267 EINPRFGGGYPH-AYECGVNFPAQLYRNLMHEINV 300 (331)
T ss_dssp EEESSCCTTHHH-HHHTTCCHHHHHHHHHTTCCCC
T ss_pred EEeCCCCCchHH-HHHcCCCHHHHHHHHHcCCCCC
Confidence 999999999875 6789999999999999999875
|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=312.05 Aligned_cols=242 Identities=18% Similarity=0.166 Sum_probs=196.1
Q ss_pred HHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCC
Q 000086 123 IVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPES 201 (2304)
Q Consensus 123 Ii~iA~~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~ 201 (2304)
..+..+..++|+|+|. +|+..|+..++..|+..||+|+||++.++..+.||..+|++++++|||+|+|.. +.
T Consensus 89 ~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~----~~--- 161 (357)
T 4fu0_A 89 ASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVT----FK--- 161 (357)
T ss_dssp ----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEE----EE---
T ss_pred hhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEe----ec---
Confidence 4445566789999998 789999999999999999999999999999999999999999999999999865 00
Q ss_pred cccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000086 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2304)
Q Consensus 202 ~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~r 281 (2304)
......++.++++++||||||||+.|+||+||++|++.++|.++++.+... +..+++|+|++| +
T Consensus 162 -------------~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~--~~~vlvE~~i~G-~ 225 (357)
T 4fu0_A 162 -------------RFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH--DTEVIVEETING-F 225 (357)
T ss_dssp -------------GGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCCS-E
T ss_pred -------------CCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc--CCeEEEEEecCC-E
Confidence 012234455677889999999999999999999999999999999987654 568999999975 9
Q ss_pred eeeEEEEEcCCCCEEEe--eccccccccccceEEEe-----CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc
Q 000086 282 HLEVQLLCDQYGNVAAL--HSRDCSVQRRHQKIIEE-----GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2304)
Q Consensus 282 eieVqvl~D~~G~vi~l--~~RdcSvqrr~qKiiee-----aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~ 354 (2304)
|++|.+++++.+.+..+ ....+.++++++|.... .|+. +++++.++|.+.|.++++++|++|.++|||++++
T Consensus 226 e~~v~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~-l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~ 304 (357)
T 4fu0_A 226 EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP 304 (357)
T ss_dssp EEEEEEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSCS-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEEecCCceEEEEEEEEcccccccccccccCCCceEecCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeC
Confidence 99999999876544322 23345566666665432 3554 8999999999999999999999999999999984
Q ss_pred cCCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHH
Q 000086 355 ETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 355 ~~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~ 389 (2304)
+|++||+|||||++-+ .|..-.++|+|+.++.-+
T Consensus 305 -dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 342 (357)
T 4fu0_A 305 -SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDK 342 (357)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred -CCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHH
Confidence 7889999999998754 244445689988776544
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=292.55 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=191.4
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|+. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 91 ~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 155 (377)
T 1ehi_A 91 AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIV--------------- 155 (377)
T ss_dssp TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEE---------------
T ss_pred ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEE---------------
Confidence 35799999997 67778888889999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHH----HHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTEE----AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~ee----a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.++ +.++++++|||+||||..|+||+||.+|+|.++|..+++.+... +.+++||+|++|.+|+
T Consensus 156 --------~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~ 225 (377)
T 1ehi_A 156 --------VDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY--DYKVLIEEAVNGAREL 225 (377)
T ss_dssp --------ECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCCSCEE
T ss_pred --------EeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCceE
Confidence 233222 44556789999999999999999999999999999999887643 4689999999876899
Q ss_pred eEEEEEcCCCCEEEeeccccc-------cccccceE------EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE
Q 000086 284 EVQLLCDQYGNVAALHSRDCS-------VQRRHQKI------IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEY 350 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcS-------vqrr~qKi------ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf 350 (2304)
+|.+++|+.+.++......+. +.+.+.|. ....|+. ++++..+++.+.|.++++++|+.|.++|||
T Consensus 226 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 304 (377)
T 1ehi_A 226 EVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 (377)
T ss_dssp EEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999876566665544331 22222222 2234776 889999999999999999999999999999
Q ss_pred EEEccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHH
Q 000086 351 LYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2304)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~ 389 (2304)
++++ +|++||+|+|||++... |....++|+|++++..+
T Consensus 305 ~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~ 346 (377)
T 1ehi_A 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDM 346 (377)
T ss_dssp EECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHH
T ss_pred EEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 9984 67899999999998653 44445799999666444
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=283.57 Aligned_cols=278 Identities=18% Similarity=0.206 Sum_probs=211.3
Q ss_pred CCccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000086 46 KPIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2304)
Q Consensus 46 ~~~~kILIan~G~---------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~s 116 (2304)
.|.+||+|+-+|. .|..+++++++.||+++ .. |....
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~-----------~i--~~~~~--------------------- 56 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAH-----------PF--DPAER--------------------- 56 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTTTS---------------------
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEE-----------EE--eCCCc---------------------
Confidence 4567888887764 68899999999999985 22 21100
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 117 YANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 117 Y~dvd~Ii~iA~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
+. . ..++.++|.|++.. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 57 ~~--~----~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--- 127 (317)
T 4eg0_A 57 PL--S----ALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFET--- 127 (317)
T ss_dssp CT--T----HHHHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---
T ss_pred hH--H----HhhhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 00 0 12456889999864 34458888999999999999999999999999999999999999999999875
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHh----hccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC----QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI 271 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a----~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i 271 (2304)
+.+.+++.+++ +++|||+||||..|+||+|+++|++.+++.++++.+... ..++
T Consensus 128 --------------------~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~ 185 (317)
T 4eg0_A 128 --------------------VMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATH--DKIV 185 (317)
T ss_dssp --------------------EETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTT--CSEE
T ss_pred --------------------EECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeE
Confidence 33334444455 789999999999999999999999999999999886533 5689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeee
Q 000086 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2304)
Q Consensus 272 ~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~ 346 (2304)
+||+|++.++|++|.+++|..+.++.+.... .+.....|. ....|+. ++++..+++.+.+.++++++|++|.+
T Consensus 186 lvEe~i~~G~E~~v~vl~~~~~~~~~i~~~~-~~~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~~~a~~~~~~lg~~G~~ 263 (317)
T 4eg0_A 186 IVEKSIEGGGEYTACIAGDLDLPLIKIVPAG-EFYDYHAKYVANDTQYLIPCG-LPAEQETELKRIARRAFDVLGCTDWG 263 (317)
T ss_dssp EEEECCCSSEEEEEEEETTCCCCCEEEEC----------------CEEESSCS-SCHHHHHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEcCCCCCcEEEEEEECCcccceEEEeeCC-ceechhhcccCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCceE
Confidence 9999998459999999998777776654332 122222232 2346776 88999999999999999999999999
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHHH
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~iA 391 (2304)
+|||++++ +|++||+|+|||++.. .|..-..+|+|++++..++.
T Consensus 264 ~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 264 RADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp EEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99999985 6889999999999854 24444578999998887764
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-27 Score=291.05 Aligned_cols=235 Identities=18% Similarity=0.206 Sum_probs=187.7
Q ss_pred HHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 128 EMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 128 ~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
+..++|+|+|+. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 84 ~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 149 (364)
T 2i87_A 84 SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYIS-------------- 149 (364)
T ss_dssp TSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE--------------
T ss_pred cccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE--------------
Confidence 356799999987 67778888899999999999999999999999999999999999999999875
Q ss_pred CcccccccccCCHH-------HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000086 207 PDDVYRQACVYTTE-------EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2304)
Q Consensus 207 ~~~~~~~~~V~s~e-------ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g 279 (2304)
+.+.+ ++.++++++|||+||||..|+||+||.+|++.++|..+++.+.. .+.+++||+|++|
T Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~--~~~~~lvEe~I~G 218 (364)
T 2i87_A 150 ---------FLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ--FDRKLVIEQGVNA 218 (364)
T ss_dssp ---------EEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT--TCSEEEEEECCCC
T ss_pred ---------EechhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCeEEEEeCccC
Confidence 33333 45566778999999999999999999999999999999988764 2468999999986
Q ss_pred cceeeEEEEEcCCCCEEEeecccc--ccccccceEEE-----eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDC--SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~Rdc--Svqrr~qKiie-----eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
+|++|.+++|+.+.++..+...+ .+.+...|... ..|+. ++++..+++.+.|.++++++|+.|.++|||++
T Consensus 219 -~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 296 (364)
T 2i87_A 219 -REIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD-LDEDVQLTLRNMALEAFKATDCSGLVRADFFV 296 (364)
T ss_dssp -EEEEEEEEESSSCEECCCEEECCSCCC-----------CCEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred -eEEEEEEEcCCCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 89999999986543333322221 23333344432 24766 88999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
++ +|++||+|+|||+++.. |....++|+|++++..++
T Consensus 297 ~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 337 (364)
T 2i87_A 297 TE-DNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKL 337 (364)
T ss_dssp CT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred ec-CCCEEEEEEeCCCCCCchhHHHHHHHHhCCCHHHHHHHH
Confidence 84 68899999999998753 334456899997775443
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=275.26 Aligned_cols=273 Identities=17% Similarity=0.262 Sum_probs=210.1
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000086 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2304)
Q Consensus 47 ~~~kILIan~G~---------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY 117 (2304)
|.+||+|+++|. .+..++++++++||+++ .. |.+ +.....
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~-----------~~--~~~-~~~~~~----------------- 49 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-----------PV--DPK-EVDVTQ----------------- 49 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTT-TSCGGG-----------------
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEE-----------EE--ecC-chHHHH-----------------
Confidence 346899999987 77899999999999985 33 211 111000
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCcc
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~ 196 (2304)
+.+.++|+|++.. |...|+..+...++..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 50 ---------~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~---- 116 (306)
T 1iow_A 50 ---------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA---- 116 (306)
T ss_dssp ---------TTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE----
T ss_pred ---------hhccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEE----
Confidence 1134678998874 33346667788888899999999999999999999999999999999999765
Q ss_pred CCCCCcccccCcccccccccCCHHHHHH--------HhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000086 197 IPPESCLVTIPDDVYRQACVYTTEEAIA--------SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2304)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~--------~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2304)
+.+. ++.+ +++++|||+||||..|+||+||++|++.+++.++++.+... +
T Consensus 117 -------------------~~~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~--~ 174 (306)
T 1iow_A 117 -------------------LTRA-EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH--D 174 (306)
T ss_dssp -------------------EEHH-HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT--C
T ss_pred -------------------Echh-hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--C
Confidence 3444 5544 67789999999999999999999999999999999887532 5
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeeccc-----ccccccc--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 000086 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRD-----CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2304)
Q Consensus 269 ~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~Rd-----cSvqrr~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalG 341 (2304)
.+++||+|++| +|++|.++. |+++...... +.....+ .......|+. ++++..+++.+.+.++++++|
T Consensus 175 ~~~lvee~i~g-~e~~v~~~~---g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg 249 (306)
T 1iow_A 175 EEVLIEKWLSG-PEFTVAILG---EEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAG-LEASQEANLQALVLKAWTTLG 249 (306)
T ss_dssp SEEEEEECCCC-CEEEEEEET---TEECCCEEEECSSSSSCHHHHHTCSCCEEESSCC-CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCcCC-EEEEEEEEC---CCccceEEEEeCCCeEchhheecCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHcC
Confidence 78999999985 899999993 3333322110 1110000 1223445775 788899999999999999999
Q ss_pred ceeeeEEEEEEEccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 342 y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
+.|.+++||++++ +|++||+|+|||+++.. |.....+|+|++++.+++.
T Consensus 250 ~~G~~~vD~~~~~-~g~~~~iEiN~rpg~~~~s~~p~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 250 CKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp CCSEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CceEEEEEEEEcC-CCCEEEEEecCCCCCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999984 67899999999998753 3445678999999998765
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=288.68 Aligned_cols=246 Identities=16% Similarity=0.198 Sum_probs=196.7
Q ss_pred ceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccccCCCCChHHHhhcccCCCCCcccccccCCCce
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFV 1924 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~ 1924 (2304)
+++.+..+|.++...+++.++.|++. +|. +..-|.++|+ |++|+. |||+ |+
T Consensus 56 ~~~~~~~~e~~~~~~~~~~~~~l~~~--------------~r~~~~r~~~rp~~-re~I~~-----------l~D~--f~ 107 (339)
T 2f9y_A 56 IDEEVHRLREKSVELTRKIFADLGAW--------------QIAQLARHPQRPYT-LDYVRL-----------AFDE--FD 107 (339)
T ss_dssp -CCGGGGTHHHHHTTTTHHHHTCCHH--------------HHHHHHTCTTCCCH-HHHHHH-----------HCEE--EE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHH--------------HhhcccCCCCCCCH-HHHHHH-----------Hccc--cE
Confidence 56667888899999999999987621 111 0011226886 999997 7888 99
Q ss_pred eccc--CCC--CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccC
Q 000086 1925 ETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE 2000 (2304)
Q Consensus 1925 E~~~--~~a--~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~ 2000 (2304)
|+.+ .|+ +++|||+|||+|+||+|||++++. ++.+ .+...||+|+|++++|++|++++|++++
T Consensus 108 El~g~~~~~~d~avV~G~ari~G~~V~Via~d~~~------------~~~~-~~~~~~G~~~~~~~~Ka~r~~~~A~~~~ 174 (339)
T 2f9y_A 108 ELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGR------------ETKE-KIRRNFGMPAPEGYRKALRLMQMAERFK 174 (339)
T ss_dssp ECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCS------------STTH-HHHTGGGCCCHHHHHHHHHHHHHHHHTT
T ss_pred EccCCcCCCCCCcEEEEEEEECCEEEEEEEEeCCC------------chhh-hhhhhcCCCCHHHHHHHHHHHHHHhhcC
Confidence 9988 688 899999999999999999997542 1222 3455689999999999999999999999
Q ss_pred CCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2001 LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2001 lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ +||||+|++++
T Consensus 175 lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~p~A~~~v 247 (339)
T 2f9y_A 175 MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVI--GEGGSGGALAIGV---GDK--VNMLQYSTYSV 247 (339)
T ss_dssp CCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEEHHHHHTTCC---CSE--EEECTTCEEES
T ss_pred CCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcCcHHHHHHhc---cCe--eeecCCCEEEe
Confidence 9999999999999999999999999999999999999999999999 6666654444432 688 99999999999
Q ss_pred eCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHH
Q 000086 2081 LEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLR 2160 (2304)
Q Consensus 2081 l~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~r 2160 (2304)
|+|++++.|.+++..-. .+ |.++ ...++.+
T Consensus 248 ~~Peg~asil~~~~~~~--------------------------~~----------------------Aae~--~~itA~~ 277 (339)
T 2f9y_A 248 ISPEGCASILWKSADKA--------------------------PL----------------------AAEA--MGIIRPR 277 (339)
T ss_dssp SCHHHHHHHHSSCSTTH--------------------------HH----------------------HHHH--HTCSHHH
T ss_pred eccchHHHHHHHhhccH--------------------------HH----------------------HHHH--cCCCHHH
Confidence 99999999998865100 00 0011 3457899
Q ss_pred HHHcCCcceecC-c----cchHHHHHHHHHHHHH
Q 000086 2161 MAAKGVIKEVVD-W----DKSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2161 m~~~G~Id~vi~-~----~~tR~~~~~~L~r~l~ 2189 (2304)
+++.|+||+||+ | ...+..+++.||+.|.
T Consensus 278 a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 311 (339)
T 2f9y_A 278 LKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLL 311 (339)
T ss_dssp HHTTTSCSCCCCCSTTCGGGCHHHHHHHHHHHHH
T ss_pred HHHcCCeeEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 999999999998 3 4566778888888864
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=287.42 Aligned_cols=249 Identities=16% Similarity=0.195 Sum_probs=195.1
Q ss_pred ccCceE---EEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccccCCCCChHHHhhcccCCCCCcccccc
Q 000086 1843 TNGVVH---LTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIF 1918 (2304)
Q Consensus 1843 ~nGv~d---~~v~dd~~~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~r~~i~~~~d~~~~~~~gl~ 1918 (2304)
.+|.+| .++.+|.++.+.+++.++.+++ |++. +..-|.++|+ |++|+. ||
T Consensus 36 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~--------------~~~~~~~~~~~r~~~-re~I~~-----------l~ 89 (327)
T 2f9i_A 36 DKNDVDLQEEIDMLEASLERETKKIYTNLKP--------------WDRVQIARLQERPTT-LDYIPY-----------IF 89 (327)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHSCCH--------------HHHHHHHTBTTSCCH-HHHHHH-----------HC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhcCCh--------------hhcccccCCCCCCCH-HHHHHH-----------hc
Confidence 345555 6788899999999999998752 1110 0111237886 999997 78
Q ss_pred cCCCceeccc--CCC--CeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHH
Q 000086 1919 DKDSFVETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALM 1994 (2304)
Q Consensus 1919 D~gsF~E~~~--~~a--~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~ 1994 (2304)
|+ |+|+.+ .|+ +++|||+|||+|+||+||++++++. +.+ .+.+.||+|+|++++|++||++
T Consensus 90 D~--f~El~~d~~~~~d~~vV~G~gri~G~~V~Via~d~~~~------------~~~-~~~~~~G~~~~~~~~Ka~r~~~ 154 (327)
T 2f9i_A 90 DS--FMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKD------------TKD-NIYRNFGMAHPEGYRKALRLMK 154 (327)
T ss_dssp EE--EEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSS------------HHH-HHHTGGGCCCHHHHHHHHHHHH
T ss_pred cc--eEEecCCCCcCcccceEEEEEEECCEEEEEEEEcCCCc------------hhh-hhhhhcCCCCHHHHHHHHHHHH
Confidence 88 999988 688 8999999999999999999975421 222 3445689999999999999999
Q ss_pred HhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeeccc
Q 000086 1995 DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADR 2074 (2304)
Q Consensus 1995 ~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p 2074 (2304)
+|+++++|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ ++|||
T Consensus 155 ~A~~~~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~~ 227 (327)
T 2f9i_A 155 QAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVI--GEGGSGGALGIGI---ANK--VLMLE 227 (327)
T ss_dssp HHHHTTCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEBHHHHHTTCC---CSE--EEEET
T ss_pred HHhhcCCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEE--CCcChHHHHHHHC---CCE--EEEcC
Confidence 9999999999999999999999999999999999999999999999999999 6666544444432 688 99999
Q ss_pred CcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhh
Q 000086 2075 TAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAEL 2154 (2304)
Q Consensus 2075 ~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~ 2154 (2304)
+|++|+|+|++++.+.+++.... .+. .++ .
T Consensus 228 ~A~~~v~~peg~a~il~~~~~~a--------------------------~~A----------------------~e~--~ 257 (327)
T 2f9i_A 228 NSTYSVISPEGAAALLWKDSNLA--------------------------KIA----------------------AET--M 257 (327)
T ss_dssp TCBCBSSCHHHHHHHHSSCGGGH--------------------------HHH----------------------HHH--H
T ss_pred CceEeecCchHHHHHHHHHhcch--------------------------HHH----------------------HHH--c
Confidence 99999999999999998865110 000 011 3
Q ss_pred cccHHHHHHcCCcceecC-c----cchHHHHHHHHHHHHH
Q 000086 2155 HDTSLRMAAKGVIKEVVD-W----DKSRSFFCRRLRRRVA 2189 (2304)
Q Consensus 2155 hdt~~rm~~~G~Id~vi~-~----~~tR~~~~~~L~r~l~ 2189 (2304)
+.++.++++.|+||+||+ | ...+..+++.+|+.|.
T Consensus 258 ~itA~~a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 297 (327)
T 2f9i_A 258 KITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFV 297 (327)
T ss_dssp TCBHHHHHHTTSSSEEECCCTTCGGGCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHcCCceEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 457899999999999999 3 3556778888888764
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=289.28 Aligned_cols=234 Identities=17% Similarity=0.208 Sum_probs=192.4
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|+ .|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~--------------- 179 (386)
T 3e5n_A 115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVC--------------- 179 (386)
T ss_dssp CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 4579999999 788889999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHH----HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+ ++.++++++|||+||||..|+||+||++|++.+||.++++.+... +.+++||+|++| +|+
T Consensus 180 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 248 (386)
T 3e5n_A 180 --------FDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAY--DHKVLVEAAVAG-REI 248 (386)
T ss_dssp --------EEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT--CSEEEEEECCCS-EEE
T ss_pred --------EeCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC--CCcEEEEcCCCC-eEE
Confidence 44444 566777889999999999999999999999999999999887643 468999999987 999
Q ss_pred eEEEEEcCCCCEEEeeccccc--cccccceEEEe------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 284 EVQLLCDQYGNVAALHSRDCS--VQRRHQKIIEE------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~RdcS--vqrr~qKiiee------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+|.+++|+.+.++......+. ++....|.... .|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD-IDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA- 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-----------------CEESSCS-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-
T ss_pred EEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 999999876666655554443 33444455432 3776 8899999999999999999999999999999994
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++.. .|..-.++|+|++++..++
T Consensus 327 dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 327 DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6789999999999854 2444457899998876554
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=280.72 Aligned_cols=234 Identities=18% Similarity=0.182 Sum_probs=192.8
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|+ +|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 160 (364)
T 3i12_A 96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT--------------- 160 (364)
T ss_dssp CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 3578999999 799999999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHH----HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+ ++.++++++|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+|++| +|+
T Consensus 161 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 229 (364)
T 3i12_A 161 --------LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF--DHKVVVEQGIKG-REI 229 (364)
T ss_dssp --------EETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEE
T ss_pred --------EEccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc--CCcEEEEcCcCC-eEE
Confidence 33333 566677889999999999999999999999999999999987654 468999999987 999
Q ss_pred eEEEEEcCCCCEEEeeccc--cccccccceE------EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 284 EVQLLCDQYGNVAALHSRD--CSVQRRHQKI------IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rd--cSvqrr~qKi------ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+|.+++|+.+.+....... ..++..+.|. ....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 230 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~- 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA- 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred EEEEEeCCCceEeeeEEEecCCCccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec-
Confidence 9999998764444433211 1122233332 2345776 8899999999999999999999999999999984
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|+|++.. .|....++|+|++++..++
T Consensus 308 ~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 308 DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHH
Confidence 6889999999888754 2454557899999876654
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=271.84 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=164.6
Q ss_pred ccccC----CCCChHHHhhcccCCCCCcccccccCCCceecccC------------------------CCCeEEEEEEEE
Q 000086 1890 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG------------------------WARTVVTGRARL 1941 (2304)
Q Consensus 1890 ~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~------------------------~a~~vVtG~arl 1941 (2304)
.++|. .++++|++|+. |||+|||+|+.+. +++++|||+|||
T Consensus 50 ~v~p~~~~~~r~~arerI~~-----------L~D~gsF~El~~~~~~~~~l~f~~y~~~l~~~~~~t~~~~avVtG~g~I 118 (285)
T 2f9i_B 50 NVCFNCDHHIALTAYKRIEA-----------ISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQL 118 (285)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------TSCTTCCEEESTTCEECCTTCCTTHHHHHHHHHHHHCCSSSEEEEEEEE
T ss_pred CcCCCCCCCCCCCHHHHHHH-----------HccCCCcEEECCCcCcCCcccccchhHHHHHHhhccCCCCeEEEEEEEE
Confidence 45554 67999999997 8999999999876 799999999999
Q ss_pred CCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhh
Q 000086 1942 GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFE 2021 (2304)
Q Consensus 1942 ~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~ 2021 (2304)
+|+||+|+|+|++++ ||++++.+++|++|++++|+++++|||+|+|++|+ .|++
T Consensus 119 ~G~~V~v~a~d~~~~---------------------gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsgGa-----r~qE 172 (285)
T 2f9i_B 119 DGMKFGVAVMDSRFR---------------------MGSMGSVIGEKICRIIDYCTENRLPFILFSASGGA-----RMQE 172 (285)
T ss_dssp TTEEEEEEEECTTTG---------------------GGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECSC-----CGGG
T ss_pred CCEEEEEEEEccccc---------------------cCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc-----chhh
Confidence 999999999987765 89999999999999999999999999999999997 4677
Q ss_pred hHHH--HHHH---HHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhH
Q 000086 2022 GILQ--AGST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKEL 2096 (2304)
Q Consensus 2022 gilk--~ga~---iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~ 2096 (2304)
|+++ ++++ .+.+++++++|+|++|+ |+++||+...+. ..+|+ ++|||+|++||++|+++..+.+++-
T Consensus 173 Gi~sl~q~aki~~~l~~~s~~~vP~Isvv~--g~~~GG~~as~a--~~~D~--i~a~p~A~i~~aGP~vi~~~~~~~~-- 244 (285)
T 2f9i_B 173 GIISLMQMGKTSVSLKRHSDAGLLYISYLT--HPTTGGVSASFA--SVGDI--NLSEPKALIGFAGRRVIEQTINEKL-- 244 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGG--GCCSE--EEECTTCBEESSCHHHHHHHHTSCC--
T ss_pred hhhhHhHHHHHHHHHHHHHcCCCCEEEEEe--CCccHHHHHHhh--hCCCE--EEEeCCcEEEEcCHHHHHHHhcccc--
Confidence 8875 4555 67777888999999999 777888866543 35688 9999999999999999866643210
Q ss_pred HHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccch
Q 000086 2097 LECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKS 2176 (2304)
Q Consensus 2097 ~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~t 2176 (2304)
+ +...++..+.+.|+||.||+++++
T Consensus 245 -------------------------~------------------------------e~~~~Ae~~~~~G~iD~Iv~~~e~ 269 (285)
T 2f9i_B 245 -------------------------P------------------------------DDFQTAEFLLEHGQLDKVVHRNDM 269 (285)
T ss_dssp -------------------------C------------------------------TTTTBHHHHHHTTCCSEECCGGGH
T ss_pred -------------------------h------------------------------HhHhhHHHHHhcCCccEEeChHHH
Confidence 0 011357778899999999999999
Q ss_pred HHHHHHHHH
Q 000086 2177 RSFFCRRLR 2185 (2304)
Q Consensus 2177 R~~~~~~L~ 2185 (2304)
|+.+...|.
T Consensus 270 r~~l~~~L~ 278 (285)
T 2f9i_B 270 RQTLSEILK 278 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877665
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=273.60 Aligned_cols=270 Identities=19% Similarity=0.219 Sum_probs=201.7
Q ss_pred EEEEECch---------HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000086 50 SILIANNG---------MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2304)
Q Consensus 50 kILIan~G---------~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dv 120 (2304)
||+|+-+| ..+..+++++++.||+++ .. |.+.....
T Consensus 5 ~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~-----------~i--~~~~~~~~---------------------- 49 (307)
T 3r5x_A 5 RIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIV-----------PI--TLNEKMDL---------------------- 49 (307)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEE-----------EE--ECSSGGGH----------------------
T ss_pred EEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEE-----------EE--cccCchhH----------------------
Confidence 67777665 467889999999998875 22 21100000
Q ss_pred HHHHHHHHHcCCCEEEeCCCc-CCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCC
Q 000086 121 QLIVEMAEMTRVDAVWPGWGH-ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP 199 (2304)
Q Consensus 121 d~Ii~iA~~~~vDaV~pG~G~-~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~ 199 (2304)
+.+..++|.|+++... ..|+..+...|+..|++++||++++++.+.||..++++++++|||+|+|..
T Consensus 50 -----~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~------- 117 (307)
T 3r5x_A 50 -----IEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIE------- 117 (307)
T ss_dssp -----HHHTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------
T ss_pred -----HHhccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------
Confidence 1223578999998632 237777888999999999999999999999999999999999999999875
Q ss_pred CCcccccCcccccccccCCHHHHHH-HhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 200 ESCLVTIPDDVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
+.+.+++.. +++.+|||+||||..|+||+||++|++.+++.++++.+... +.+++||+|++
T Consensus 118 ----------------~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i~ 179 (307)
T 3r5x_A 118 ----------------LTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIK 179 (307)
T ss_dssp ----------------EESSSCCCHHHHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH--CSEEEEEECCC
T ss_pred ----------------EeChhhhhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEECCcC
Confidence 222222222 56778999999999999999999999999999999887654 46899999998
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccc--cccceE----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQ--RRHQKI----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvq--rr~qKi----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
| +|++|.++.+ +++.+....+..+ ....|. ....|+. ++++..+++.+.+.++++++|+.|.+++||++
T Consensus 180 G-~e~~v~v~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~ 254 (307)
T 3r5x_A 180 G-EEITCSIFDG---KQLPIISIRHAAEFFDYNAKYDDASTIEEVIE-LPAELKERVNKASLACYKALKCSVYARVDMMV 254 (307)
T ss_dssp S-EEEEEEEETT---EECCCEEEEEEEEEETTEEEEEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred C-EEEEEEEECC---EEeeEEEEEcCCcccChhhcCCCCCCeEecCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 6 8999998643 3432222222211 223333 2223665 88999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
+ +|++||+|+|||++... |.....+|+|+.++..++.
T Consensus 255 ~--~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll 295 (307)
T 3r5x_A 255 K--DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMII 295 (307)
T ss_dssp E--TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred E--CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHH
Confidence 9 68999999999998542 4456678999988776653
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-26 Score=279.75 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=184.3
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++|+|+|.. |...|+..+...|+..|++++|+++.++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (343)
T 1e4e_A 88 INHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWV--------------- 152 (343)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred cccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEE---------------
Confidence 45799999985 45567878889999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.+++. .+++|||+||||..|+||+||++|++.+||..+++.+... +.+++||+|++| +|++|.+
T Consensus 153 --------~~~~~~~~--~~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~I~G-~E~~v~v 219 (343)
T 1e4e_A 153 --------INKDDRPV--AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY--DSKILIEQAVSG-CEVGCAV 219 (343)
T ss_dssp --------ECTTCCCC--GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT--CSSEEEEECCCS-EEEEEEE
T ss_pred --------Eechhhhh--hhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEEeCcCC-eEEEEEE
Confidence 22222211 1578999999999999999999999999999999887542 568999999986 8999999
Q ss_pred EEcCCCCEEEee--cccc--ccccccce---------EEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc
Q 000086 288 LCDQYGNVAALH--SRDC--SVQRRHQK---------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2304)
Q Consensus 288 l~D~~G~vi~l~--~Rdc--Svqrr~qK---------iieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~ 354 (2304)
++++.+ +..+. ...+ .+.....| .....|+. ++++..+++.+.|.++++++|+.|.+++||++++
T Consensus 220 l~~~~~-~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 297 (343)
T 1e4e_A 220 LGNSAA-LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD 297 (343)
T ss_dssp EEETTC-CEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT
T ss_pred EeCCCC-eEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC
Confidence 998754 22221 1111 01111112 22345766 8889999999999999999999999999999984
Q ss_pred cCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 355 ETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 355 ~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
+|++||+|+|||++... |....++|+|+.++..++.
T Consensus 298 -~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 298 -NGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred -CCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 68899999999998752 4445567999988877653
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=276.02 Aligned_cols=231 Identities=19% Similarity=0.267 Sum_probs=187.6
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 131 ~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
++|+|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~----------------- 171 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAV----------------- 171 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE-----------------
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------
Confidence 699999998 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccCCHHH--HHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 210 VYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 210 ~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.++ ....++++|||+||||..|+||+||.+|++.+||.++++.+... +.+++||+|++| +|++|.+
T Consensus 172 ------~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~~v~v 242 (373)
T 3lwb_A 172 ------LRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH--DPKVIVEAAISG-RELECGV 242 (373)
T ss_dssp ------ECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT--CSSEEEEECCEE-EEEEEEE
T ss_pred ------EECcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEeCCCCC-eEEEEEE
Confidence 112111 11235679999999999999999999999999999999988753 568999999986 9999999
Q ss_pred EEcCCCC--EEEeeccccc--------cccccceEE-----EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEE
Q 000086 288 LCDQYGN--VAALHSRDCS--------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2304)
Q Consensus 288 l~D~~G~--vi~l~~RdcS--------vqrr~qKii-----eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~ 352 (2304)
++++.+. +.......+. +.+...|.. ...|+. ++++..+++.+.|.++++++|++|.++|||++
T Consensus 243 l~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~ 321 (373)
T 3lwb_A 243 LEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 321 (373)
T ss_dssp EECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred EECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEE
Confidence 9988663 2222222222 444334433 234776 89999999999999999999999999999999
Q ss_pred EccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
++ +|. ||+|+|||++... |..-.++|+|++++..++
T Consensus 322 ~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~l 361 (373)
T 3lwb_A 322 TD-DGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATM 361 (373)
T ss_dssp ET-TEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred EC-CCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 94 567 9999999998542 434457899987765443
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-26 Score=277.86 Aligned_cols=232 Identities=17% Similarity=0.212 Sum_probs=185.0
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (346)
T 3se7_A 88 TIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWT--------------- 152 (346)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred ccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE---------------
Confidence 46799999987 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.+ ..+++++|||+||||..|+||+|+++|++.+||.++++.+... +.+++||+|++| +|++|.+
T Consensus 153 --------~~~~~--~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G-~E~~v~v 219 (346)
T 3se7_A 153 --------VTADE--KIPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY--DSKVLIEEAVIG-TEIGCAV 219 (346)
T ss_dssp --------EETTS--CCCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT--CSEEEEEECCCS-EEEEEEE
T ss_pred --------EcCcH--HHHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC--CCcEEEEeCcCC-EEEEEEE
Confidence 12211 2345679999999999999999999999999999999987643 568999999985 8999999
Q ss_pred EEcCCCCEE-Eeeccccc------cccccceEE-----EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 288 LCDQYGNVA-ALHSRDCS------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 288 l~D~~G~vi-~l~~RdcS------vqrr~qKii-----eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+.++.+..+ .+....+. .|++..|.. ...|+. ++++..+++.+.|.++++++|++|.+++||++++
T Consensus 220 l~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~- 297 (346)
T 3se7_A 220 MGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTE- 297 (346)
T ss_dssp EEETTEEEECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECT-
T ss_pred EecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeC-
Confidence 998654222 12121111 233344443 234776 8899999999999999999999999999999994
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++.. .|....++|+|+.++..++
T Consensus 298 ~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 298 DGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 5789999999998753 2444457899999876654
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=269.29 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=182.8
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 130 ~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
.++|+|+|.. |...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|+|..
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~---------------- 160 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHT---------------- 160 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEE----------------
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE----------------
Confidence 5799999986 67779999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHH----HHHHHhhccCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000086 209 DVYRQACVYTTE----EAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2304)
Q Consensus 209 ~~~~~~~V~s~e----ea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~rei 283 (2304)
+.+.+ .+.++++++||| +||||..|+||+||.+|++.+||.++++.+... +.+++||+|++| +|+
T Consensus 161 -------~~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~ 230 (372)
T 3tqt_A 161 -------LSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY--DDRLMVEPRIRG-REI 230 (372)
T ss_dssp -------ECTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCS-EEE
T ss_pred -------EechhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEECCCCC-EEE
Confidence 12211 234567789999 999999999999999999999999999887643 578999999985 999
Q ss_pred eEEEEEcCCCCEEEeeccc-----cccccccc--e-EEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 284 EVQLLCDQYGNVAALHSRD-----CSVQRRHQ--K-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rd-----cSvqrr~q--K-iieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
+|.+++|+...+....... +..+.+++ . .....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 231 ~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~- 308 (372)
T 3tqt_A 231 ECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP- 308 (372)
T ss_dssp EEEEEESSSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred EEEEEeCCCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC-
Confidence 9999998632111111110 11111111 1 23445776 8999999999999999999999999999999984
Q ss_pred CCcEEEEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
+|++||+|+|||++-+ .|..-.++|+|++++..++
T Consensus 309 dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 309 NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6889999999999844 3555567899998876554
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-25 Score=266.68 Aligned_cols=231 Identities=22% Similarity=0.261 Sum_probs=189.9
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
+.++|+|+|+. |...|+..+...|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 138 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVA--------------- 138 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 56799999987 77789888999999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
+.+.++ +.. ++|||+||||..|+||+|+.+|++.+||.++++.+... +.+++||+|++|.+|+++.+
T Consensus 139 --------~~~~~~--~~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~~v~v 205 (322)
T 2fb9_A 139 --------VRKGEP--PVV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFRY--DEKAVVEKALSPVRELEVGV 205 (322)
T ss_dssp --------EETTSC--CCC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCSSCEEEEEEE
T ss_pred --------EECchh--hhh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCeEEEEeCCCCCeeEEEEE
Confidence 112211 112 78999999999999999999999999999999887642 46899999998768999999
Q ss_pred EEcCCCCEEEeeccc--cccccccceEEE-----eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAALHSRD--CSVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~l~~Rd--cSvqrr~qKiie-----eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
++++.++++...... +.+.+...|... ..|+. ++++..+++.+.|.++++++|+.|.++|||+++ +|++|
T Consensus 206 l~~~~~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~--~g~~~ 282 (322)
T 2fb9_A 206 LGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFLA--EGELY 282 (322)
T ss_dssp ESSSSCEEEEEEEEEEECCEEETTTEEECCEEEEESSCC-CCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE--TTEEE
T ss_pred EeCCCceEeeeEEEeeCCCccCHHHcccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE--CCcEE
Confidence 998765555444332 234444445432 35776 788899999999999999999999999999998 78999
Q ss_pred EEEeccCCCCCc----ceehhhhcCCHHHHHHHH
Q 000086 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGVDL~~~qL~i 390 (2304)
|+|+|||++... |....++|+|++++..++
T Consensus 283 vlEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 316 (322)
T 2fb9_A 283 LNELNTIPGFTPTSMYPRLFEAGGVAYPELLRRL 316 (322)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEEECCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 999999998752 333457899988887654
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=270.17 Aligned_cols=235 Identities=17% Similarity=0.203 Sum_probs=181.3
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCC-CCcCCCCCCCccCCCCCcccccCc
Q 000086 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAAN-VPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 131 ~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aG-VPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++| ||+|+|.. +..
T Consensus 119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~-------------~~~ 185 (383)
T 3k3p_A 119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVA-------------LIE 185 (383)
T ss_dssp TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEE-------------EET
T ss_pred CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEE-------------EeC
Confidence 789999965 556689999999999999999999999999999999999999999 99999875 000
Q ss_pred ccccccccCCH-HHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000086 209 DVYRQACVYTT-EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2304)
Q Consensus 209 ~~~~~~~V~s~-eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqv 287 (2304)
..+. +++.++++++||||||||..|+||+||++|++.+||.++++.+... +..++||+|++| +|++|.+
T Consensus 186 -------~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~--~~~vlVEe~I~G-~E~~v~v 255 (383)
T 3k3p_A 186 -------GEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY--DSRVLIEQGVDA-REIEVGI 255 (383)
T ss_dssp -------TSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEEEEEE
T ss_pred -------ccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCCCC-eEEEEEE
Confidence 1122 5667778899999999999999999999999999999999887644 468999999985 8999999
Q ss_pred EEcCCCCEEEeecc--ccccccccceE-----EEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEE
Q 000086 288 LCDQYGNVAALHSR--DCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2304)
Q Consensus 288 l~D~~G~vi~l~~R--dcSvqrr~qKi-----ieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~y 360 (2304)
++|+...+...... ++.+.....|. ....|+. ++++..+++.+.|.++++++|++|.++|||++++ +|++|
T Consensus 256 l~d~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~g~~~ 333 (383)
T 3k3p_A 256 LGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVY 333 (383)
T ss_dssp EESSSCEECCCEEEC-----------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEE
T ss_pred EeCCCeeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEEC-CCCEE
Confidence 99854333222221 12233333333 3346877 8999999999999999999999999999999984 68899
Q ss_pred EEEeccCCCCC----cceehhhhcCCHHHHHHHH
Q 000086 361 FLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 361 fLEINpRlqge----hpvtE~vtGVDL~~~qL~i 390 (2304)
|+|+|||++-+ .|..-.++|+|++++..++
T Consensus 334 vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 334 LNELNTMPGFTQWSMYPLLWENMGLSYSVLIEEL 367 (383)
T ss_dssp EEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 99999999843 3555567899998876654
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=257.97 Aligned_cols=270 Identities=14% Similarity=0.158 Sum_probs=192.6
Q ss_pred EEEECc--hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 51 ILIANN--GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 51 ILIan~--G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
|+|++. +..+..++++++++|++++ ++.. .+ .. ...+|. + ..
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~G~~v~---------~~~~-~~---~~--~~~~~~------------~---------~~ 45 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEALGLPYK---------KVYV-PA---LP--MVLGER------------P---------KE 45 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTCCEE---------EEEG-GG---CC--EETTBC------------C---------GG
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCcEE---------EEeh-hh---ce--eeccCC------------C---------cc
Confidence 677774 6788999999999999985 2222 11 11 112221 1 12
Q ss_pred HcCCC-EEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccC
Q 000086 129 MTRVD-AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2304)
Q Consensus 129 ~~~vD-aV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~ 207 (2304)
..++| ++++.+|.. ++..++..|++.|+++++ +++++..+.||..++++++++|||+|+|..
T Consensus 46 ~~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~--------------- 108 (280)
T 1uc8_A 46 LEGVTVALERCVSQS-RGLAAARYLTALGIPVVN-RPEVIEACGDKWATSVALAKAGLPQPKTAL--------------- 108 (280)
T ss_dssp GTTCCEEEECCSSHH-HHHHHHHHHHHTTCCEES-CHHHHHHHHBHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred cCCCCEEEECCccch-hhHHHHHHHHHCCCceeC-CHHHHHHhCCHHHHHHHHHHcCcCCCCeEe---------------
Confidence 24689 788876622 455677888889999985 599999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH--HhhCCCCcEEEEEeccc-cceee
Q 000086 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV--QGEVPGSPIFIMKVASQ-SRHLE 284 (2304)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~--~~e~~~~~i~VEeyI~g-~reie 284 (2304)
+.+.+++.++++++|||+|+||..|+||+|++++++.+++..+++.+ .......++++|+|+++ +++++
T Consensus 109 --------~~~~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~ 180 (280)
T 1uc8_A 109 --------ATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIR 180 (280)
T ss_dssp --------ESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEE
T ss_pred --------eCCHHHHHHHHHHhCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEE
Confidence 67888998888999999999999999999999999999999988776 22222568999999987 57777
Q ss_pred EEEEEcCCCCEEEeecccccccccc-ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEE
Q 000086 285 VQLLCDQYGNVAALHSRDCSVQRRH-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2304)
Q Consensus 285 Vqvl~D~~G~vi~l~~RdcSvqrr~-qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLE 363 (2304)
+.++. |.++....+...-.+.+ ...-...|.. ++ +++.+.+.++++++|+ |.+++||++++ +++||+|
T Consensus 181 v~v~~---~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~----~~~~~~~~~~~~~lg~-g~~~vD~~~~~--~g~~~iE 249 (280)
T 1uc8_A 181 VFVVG---ERAIAAIYRRSAHWITNTARGGQAENCP-LT----EEVARLSVKAAEAVGG-GVVAVDLFESE--RGLLVNE 249 (280)
T ss_dssp EEEET---TEEEEEEEC--------------CEECC-CC----HHHHHHHHHHHHHTTC-SEEEEEEEEET--TEEEEEE
T ss_pred EEEEC---CEEEEEEEEecCCccccccCCccccCCC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEeC--CCeEEEE
Confidence 77763 34443322210000000 0000012433 33 3889999999999999 99999999994 4599999
Q ss_pred eccCCCCCcceehhhhcCCHHHHHHHHHcCC
Q 000086 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394 (2304)
Q Consensus 364 INpRlqgehpvtE~vtGVDL~~~qL~iA~G~ 394 (2304)
+|||++..+ ++.++|+|+++++++.++|.
T Consensus 250 iN~r~g~~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 250 VNHTMEFKN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp EETTCCCTT--HHHHHCCCHHHHHHHHHHHT
T ss_pred EeCCCCccc--hheeeccCHHHHHHHHHHhh
Confidence 999998765 57789999999999998874
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=252.77 Aligned_cols=260 Identities=12% Similarity=0.107 Sum_probs=182.9
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~---~ir~ADe~v~vp~~~~~~sY~dvd~Ii~ 125 (2304)
.||||+|+| .+..++++++++|++++ ++ |...+.+ ....+|+.+.++. |.| + .
T Consensus 3 m~Ililg~g-~~~~l~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~------~~d-~---~ 58 (334)
T 2r85_A 3 VRIATYASH-SALQILKGAKDEGFETI-----------AF--GSSKVKPLYTKYFPVADYFIEEK------YPE-E---E 58 (334)
T ss_dssp SEEEEESST-THHHHHHHHHHTTCCEE-----------EE--SCGGGHHHHHTTSCCCSEEECSS------CCH-H---H
T ss_pred eEEEEECCh-hHHHHHHHHHhCCCEEE-----------EE--ECCCCCcccccccccCceEecCC------cCh-H---H
Confidence 489999999 99999999999999985 33 2222222 3456788877642 322 2 2
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 126 iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
+++ .+|+|+|+.++... ...+.|++.|++++ |++++++.+.||..++++++++|||+|+| .
T Consensus 59 l~~--~~d~i~~~~e~~~~--~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~-~------------- 119 (334)
T 2r85_A 59 LLN--LNAVVVPTGSFVAH--LGIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV-Y------------- 119 (334)
T ss_dssp HHH--TTEEECCCTTHHHH--HCHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB-C-------------
T ss_pred hcc--cCCEEEECcchhhh--hHHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc-c-------------
Confidence 333 35888877432211 12345677899876 56789999999999999999999999997 3
Q ss_pred cCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCcEEEEEeccccce
Q 000086 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSPIFIMKVASQSRH 282 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~i~VEeyI~g~re 282 (2304)
.+. ++++||+||||..|+||+||++|++.+++..+++.+... ....+++||+|++| .+
T Consensus 120 -----------~~~-------~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e 180 (334)
T 2r85_A 120 -----------EDP-------DDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VP 180 (334)
T ss_dssp -----------SCG-------GGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EE
T ss_pred -----------CCh-------HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ce
Confidence 111 235799999999999999999999999999999887643 12468999999987 67
Q ss_pred eeEEEEEcCCCC-EE--Eeeccccccc-----c----c-c----ceEEEeC---CCCCCCHHHHHHHHHHHHHHHHHC--
Q 000086 283 LEVQLLCDQYGN-VA--ALHSRDCSVQ-----R----R-H----QKIIEEG---PITVAPLETVKKLEQAARRLAKCV-- 340 (2304)
Q Consensus 283 ieVqvl~D~~G~-vi--~l~~RdcSvq-----r----r-~----qKiieea---Pa~~l~~e~~~~m~e~A~rlakal-- 340 (2304)
+++.++.+..++ +- ...+| +.++ + + . ....... |+. ++++..+++.+.+.++++++
T Consensus 181 ~~~~~~~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~-l~~~~~~~i~~~a~~~~~~l~~ 258 (334)
T 2r85_A 181 VYPHYFYSKVREELELMSIDRR-YESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIV-LRESLLMDVIEAGERVVKAAEE 258 (334)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE-EEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECC-CCGGGHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcCceeeeeeeccE-EEeccCcccccccccccccccCCceeeeCCCCcc-cCHHHHHHHHHHHHHHHHHHHh
Confidence 787777664333 11 11111 1110 0 0 0 0001112 665 77888899999999999999
Q ss_pred ---CceeeeEEEEEEEccCCcEEEEEeccCCCCCcc
Q 000086 341 ---NYVGAATVEYLYSMETGEYYFLELNPRLQVEHP 373 (2304)
Q Consensus 341 ---Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehp 373 (2304)
++.|.+++||++++ +|++||+|+|||++++.+
T Consensus 259 ~~~~~~G~~~vd~~~~~-~g~~~viEiN~R~g~~~~ 293 (334)
T 2r85_A 259 LMGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGTN 293 (334)
T ss_dssp HSSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGGG
T ss_pred hcccccccEEEEEEECC-CCCEEEEEEeCCcCCCce
Confidence 89999999999984 678999999999998643
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=256.76 Aligned_cols=232 Identities=14% Similarity=0.142 Sum_probs=182.9
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcc
Q 000086 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2304)
Q Consensus 131 ~vDaV~pG~-G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~ 209 (2304)
++|+|+|.. |...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|+|..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~----------------- 169 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVL----------------- 169 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEE-----------------
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEE-----------------
Confidence 689999974 56678888999999999999999999999999999999999999999999865
Q ss_pred cccccccCCHH--HHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee-EE
Q 000086 210 VYRQACVYTTE--EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE-VQ 286 (2304)
Q Consensus 210 ~~~~~~V~s~e--ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reie-Vq 286 (2304)
+.+.+ ++.+ ++++|||+||||..|+||.|+.+|++.+||.++++.+... +.+++||+|++|.+|++ +.
T Consensus 170 ------~~~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~--~~~vlVEe~I~G~~E~svi~ 240 (367)
T 2pvp_A 170 ------LNEKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY--SKEVLIEPFIQGVKEYNLAG 240 (367)
T ss_dssp ------ECTTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT--CSCEEEEECCTTCEEEEEEE
T ss_pred ------EeCCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeCCCCCceeeEEE
Confidence 33333 5555 6789999999999999999999999999999999887642 56899999998768955 33
Q ss_pred EEEcCCCCEEEeecccc---ccccccceEEE-----eCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCc
Q 000086 287 LLCDQYGNVAALHSRDC---SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2304)
Q Consensus 287 vl~D~~G~vi~l~~Rdc---Svqrr~qKiie-----eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~ 358 (2304)
+..+ |+++....+-. .+.....|... ..|+. ++++..+++.+.|.++++++|+.|.++|||+++ +|+
T Consensus 241 v~v~--g~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~g~ 315 (367)
T 2pvp_A 241 CKIK--KDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--ENE 315 (367)
T ss_dssp EEET--TEEEEEEEEETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--TTE
T ss_pred EEEC--CEEEEEEEEEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--CCe
Confidence 3333 55443322111 12222233332 24665 889999999999999999999999999999998 789
Q ss_pred EEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+||+|+|||++.+. .+ +.. |++++..++..+.++.
T Consensus 316 ~~vlEiN~rpg~t~-~s-~~p--~~~~l~~~li~~~~~~ 350 (367)
T 2pvp_A 316 VYLNEINPIPGSLA-NY-LFD--DFKTTLENLAQSLPKT 350 (367)
T ss_dssp EEEEEEESSCGGGG-GG-GSS--SHHHHHHHHHHHCC--
T ss_pred EEEEEEeCCCCCCc-cc-ccC--CHHHHHHHHHhCcccc
Confidence 99999999998742 11 112 8999999998887665
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=250.90 Aligned_cols=287 Identities=11% Similarity=0.134 Sum_probs=195.0
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCC
Q 000086 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGG 111 (2304)
Q Consensus 35 ~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~---~ir~ADe~v~vp~~ 111 (2304)
+.++++...-.. .+|+|+|+| .|+.++++++++||+|+ ++ |...+++ ....||+++.++
T Consensus 7 ~~~~~~~~~~~~--~~I~ilGs~-l~~~l~~aAk~lG~~vi-----------~v--d~~~~~p~~~~~~~ad~~~~~d-- 68 (361)
T 2r7k_A 7 ILEIFDKYNKDE--ITIATLGSH-TSLHILKGAKLEGFSTV-----------CI--TMKGRDVPYKRFKVADKFIYVD-- 68 (361)
T ss_dssp HHHHHTTSCTTS--CEEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTSCHHHHHTTCCSEEEECS--
T ss_pred HHHHHHhccccC--CEEEEECcH-HHHHHHHHHHHCCCEEE-----------EE--ECCCCCCcccccccCceEEECC--
Confidence 456666533233 459999999 99999999999999985 33 3333445 667899999874
Q ss_pred CCCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHH-HCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcC
Q 000086 112 TNNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLS-TKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2304)
Q Consensus 112 ~~~~sY~dv--d~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~-~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtp 188 (2304)
.|.|+ +.+++.+.+.. +.|.|-..+. . ......++ +.|++++| +..+++..+||...+++++++|||||
T Consensus 69 ----~~~d~~~~~~l~~l~~~~-~vV~pe~~~v-~-~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp 140 (361)
T 2r7k_A 69 ----NFSDIKNEEIQEKLRELN-SIVVPHGSFI-A-YCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVP 140 (361)
T ss_dssp ----SGGGGGSHHHHHHHHHTT-EEECCBHHHH-H-HHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCC
T ss_pred ----CcccccHHHHHHHHHHcC-CEEEeCchhh-h-HHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCC
Confidence 34452 45555555553 5544321100 0 00122334 78998886 88889999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--
Q 000086 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV-- 266 (2304)
Q Consensus 189 p~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~-- 266 (2304)
+|.. +.++ ++||+||||..++||||+++|+|.+|+.++++.+....
T Consensus 141 ~~~~-------------------------~~~e-------~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~ 188 (361)
T 2r7k_A 141 KKYE-------------------------SPED-------IDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGIL 188 (361)
T ss_dssp CEES-------------------------SGGG-------CCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSC
T ss_pred CEeC-------------------------CHHH-------cCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcccc
Confidence 8632 2222 36999999999999999999999999999998874321
Q ss_pred ---CCCcEEEEEeccccceeeEEEEEcCCCC---EEEeeccc-------cccccccc--------eEEE-eCCCCCCCHH
Q 000086 267 ---PGSPIFIMKVASQSRHLEVQLLCDQYGN---VAALHSRD-------CSVQRRHQ--------KIIE-EGPITVAPLE 324 (2304)
Q Consensus 267 ---~~~~i~VEeyI~g~reieVqvl~D~~G~---vi~l~~Rd-------cSvqrr~q--------Kiie-eaPa~~l~~e 324 (2304)
.+.+++||||++| .++++..+..--.+ ++.+..|- |.+..+.| ..+. ..|+. ++++
T Consensus 189 ~~~~~~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~-l~~~ 266 (361)
T 2r7k_A 189 TDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV-IRES 266 (361)
T ss_dssp CHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC-CCGG
T ss_pred ccCCCCeEEEEeccce-EEeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCCc-CCHH
Confidence 1247999999987 46676666553222 22222220 10100111 1111 12776 7888
Q ss_pred HHHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHH
Q 000086 325 TVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384 (2304)
Q Consensus 325 ~~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~ 384 (2304)
+.+++.+.+.++++++ |+.|++++||++++ +|+++|+|+|||++|..++.-. |.+..
T Consensus 267 ~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg~i~V~EIapR~gGg~~~~~~--g~p~~ 329 (361)
T 2r7k_A 267 LLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSFMN--GGPYS 329 (361)
T ss_dssp GHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGGTT--CCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CCCEEEEEEcCCCCCCcccccC--CCCch
Confidence 8999999999999998 89999999999983 6789999999999998554421 55533
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=233.31 Aligned_cols=218 Identities=17% Similarity=0.107 Sum_probs=163.5
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCC
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~ 193 (2304)
++| .+.+.+++++ +|++++. +|.......+.+.++..| .++|+++++++.+.||..+++++++ |||+|+|..
T Consensus 57 ~df--~~~l~~~~~~--~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~- 129 (305)
T 3df7_A 57 VDS--MDSMEKYLEK--SDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL- 129 (305)
T ss_dssp BCC--GGGHHHHHTT--CSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-
T ss_pred cCH--HHHHHHHHHh--cCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-
Confidence 355 3567777765 4666653 232222122345555567 7999999999999999999999999 999999642
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEE
Q 000086 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFI 273 (2304)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~V 273 (2304)
.++|||+||||..|+||+|++++++ .+.++++
T Consensus 130 ---------------------------------~~~~~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lv 161 (305)
T 3df7_A 130 ---------------------------------RPLDCKFIIKPRTACAGEGIGFSDE---------------VPDGHIA 161 (305)
T ss_dssp ---------------------------------SCCSSSEEEEESSCC----CBCCSS---------------CCTTEEE
T ss_pred ---------------------------------ccCCCCEEEEeCCCCCCCCEEEEec---------------CCCCEEE
Confidence 2579999999999999999999998 3578999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEeecccccccccc-ceE-EEeCCCCCCCHHHHHHHHHHHHHHHHHC-CceeeeEEEE
Q 000086 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH-QKI-IEEGPITVAPLETVKKLEQAARRLAKCV-NYVGAATVEY 350 (2304)
Q Consensus 274 EeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~-qKi-ieeaPa~~l~~e~~~~m~e~A~rlakal-Gy~Ga~tVEf 350 (2304)
|+|++| +|++|.++.++ .+..+.. ..+... .+. -...|+. ++++..+++.+.|.++++++ |+.|.+++||
T Consensus 162 Ee~I~G-~e~sv~v~~g~--~~~~~~~---~~~~~~~~~~~g~~~p~~-l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~ 234 (305)
T 3df7_A 162 QEFIEG-INLSVSLAVGE--DVKCLSV---NEQIINNFRYAGAVVPAR-ISDEVKREVVEEAVRAVECVEGLNGYVGVDI 234 (305)
T ss_dssp EECCCS-EEEEEEEEESS--SEEEEEE---EEEEEETTEEEEEEESCC-CCHHHHHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred EeccCC-cEEEEEEEeCC--eEEEEEE---eeEeccCceeccccccCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEE
Confidence 999985 89999999853 3433321 111111 111 1234665 78899999999999999999 9999999999
Q ss_pred EEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000086 351 LYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2304)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~i 399 (2304)
+++ |++||+|+|||+++++...+.++|+|++++++++ +.+.+..
T Consensus 235 ~~~---~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~ 278 (305)
T 3df7_A 235 VYS---DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG--EVKHVRR 278 (305)
T ss_dssp EES---SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC--CCCCCCC
T ss_pred EEC---CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc--cCCCCch
Confidence 995 6799999999999998777889999999999988 5554443
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-22 Score=239.28 Aligned_cols=249 Identities=10% Similarity=0.107 Sum_probs=168.2
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~---~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
+|.|+|+| .|+.++++|+++|++|+ ++ |...+++ ....||+++.++. |.| +
T Consensus 4 ~I~~lGsg-l~~~~~~aAk~lG~~vi-----------v~--d~~~~~p~~~a~~~ad~~~~~~~------~~d------l 57 (320)
T 2pbz_A 4 IVSTIASH-SSLQILLGAKKEGFKTR-----------LY--VSPKRRPFYSSLPIVDDLVVAEE------MTS------I 57 (320)
T ss_dssp CEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTTHHHHHTCTTCSEEEECSC------SCC------T
T ss_pred EEEEEcCH-hHHHHHHHHHHCCCEEE-----------EE--ECCCCCccchhhhcCCeEEECCc------HHH------H
Confidence 49999999 99999999999999985 34 4444555 7779999999842 444 2
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCccccc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v 206 (2304)
++ ..|.|.|-..+.. ....+.|++.|+++. |+.++++...||...+++++++|||+|+|..
T Consensus 58 ~~--~~dvitpe~e~v~--~~~l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~-------------- 118 (320)
T 2pbz_A 58 LN--DDGIVVPHGSFVA--YLGIEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVVE-------------- 118 (320)
T ss_dssp TC--CSSBCCCBTTHHH--HSCHHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC--------------
T ss_pred Hh--cCCEEEecccchh--HHHHHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC--------------
Confidence 22 3477765533221 113345678888876 8889999999999999999999999999763
Q ss_pred CcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000086 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2304)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVq 286 (2304)
++ ++ +++|||||||..|+||+|+++++| +|+..+++.+. .+++||||+++.+ +.+.
T Consensus 119 ~e------------e~-----~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~-----~~~IiEEfI~g~~-~~~~ 174 (320)
T 2pbz_A 119 PE------------DA-----KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTLE-----EPYRVERFIPGVY-LYVH 174 (320)
T ss_dssp SC------------CC-----CSSCCEEEECC------------C-EECSCCCC---------CCEEEECCCSCE-EEEE
T ss_pred Hh------------Hc-----CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcC-----CCEEEEeeeceEe-ccee
Confidence 01 11 489999999999999999999999 99987665441 4799999999854 4666
Q ss_pred EEEc-CCCCEEEeeccccccccccce---------E-EEeCCCCCCCHHHHHHHHHHHHHHHHHC------CceeeeEEE
Q 000086 287 LLCD-QYGNVAALHSRDCSVQRRHQK---------I-IEEGPITVAPLETVKKLEQAARRLAKCV------NYVGAATVE 349 (2304)
Q Consensus 287 vl~D-~~G~vi~l~~RdcSvqrr~qK---------i-ieeaPa~~l~~e~~~~m~e~A~rlakal------Gy~Ga~tVE 349 (2304)
++.+ -.|++..++.++--..+.... . ....|+. +++++.+++.+.+.++++++ |+.|++++|
T Consensus 175 ~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~~~~~~~G~~P~~-~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE 253 (320)
T 2pbz_A 175 FFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAIA-LRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH 253 (320)
T ss_dssp EEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEEECE-ECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE
T ss_pred EEeccccCceeEEEecceEEEECCeeecccCCCceeeecCCCCc-cCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE
Confidence 6665 345554443322100011100 1 1112665 66778899999999999998 999999999
Q ss_pred EEEEccCCcEEEEEeccCCCCC
Q 000086 350 YLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqge 371 (2304)
++ .++++||+|||||++|+
T Consensus 254 --~~-~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 254 --FA-YDGSFKAIGIASRIDGG 272 (320)
T ss_dssp --EE-CSSSCEEEEEESSBCSG
T ss_pred --Ec-CCCcEEEEEecCCCCCC
Confidence 45 36789999999999887
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=214.68 Aligned_cols=197 Identities=18% Similarity=0.123 Sum_probs=153.1
Q ss_pred ccccC----CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------------------CCCeEEEEE
Q 000086 1890 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------------------WARTVVTGR 1938 (2304)
Q Consensus 1890 ~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------------------~a~~vVtG~ 1938 (2304)
.++|. ..+++|++|+. |||+|||.|+.+. ++++||||+
T Consensus 44 ~v~~~~~~~~r~~arerI~~-----------L~D~gsF~E~~~~~~~~~~~~f~d~~~y~~~l~~~~~~t~~~~avvtG~ 112 (304)
T 2f9y_B 44 EVCPKCDHHMRMTARNRLHS-----------LLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMK 112 (304)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------HSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHH-----------HCCCCcEEEECCccccCCccccccccChHHHHHHHHhccCCCCcEEEEE
Confidence 45663 78999999997 8999999999753 568999999
Q ss_pred EEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhh
Q 000086 1939 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 2018 (2304)
Q Consensus 1939 arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~ 2018 (2304)
|+|+|+||+|+++|++++ ||++++..++|++|+++.|.++++|+|+|.|++|+..+...
T Consensus 113 g~i~G~~V~v~a~d~~~~---------------------ggslg~~~~~Ki~r~~e~A~~~~~PvI~l~~sGGarlqeg~ 171 (304)
T 2f9y_B 113 GTLYGMPVVAAAFEFAFM---------------------GGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEAL 171 (304)
T ss_dssp CEETTEECBEEEECTTST---------------------TTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCGGGTH
T ss_pred EEECCEEEEEEEEcCccc---------------------cCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCCCcCHHHHH
Confidence 999999999999998766 99999999999999999999999999999999986652211
Q ss_pred hhhhHHHHHHHHHHHHH---cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhh
Q 000086 2019 LFEGILQAGSTIVENLR---TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKE 2095 (2304)
Q Consensus 2019 e~~gilk~ga~iv~al~---~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~ 2095 (2304)
+ -+..+++++.++. ...+|+|++|. |.+.||+.+.+.. ..|+ ++|+|+|++++++|+.+..+...+
T Consensus 172 ~---~l~~~~~i~~al~~~~~~~vP~IavV~--G~~~GGg~a~~a~--~~D~--via~~~A~i~v~Gp~~i~~~ig~~-- 240 (304)
T 2f9y_B 172 M---SLMQMAKTSAALAKMQERGLPYISVLT--DPTMGGVSASFAM--LGDL--NIAEPKALIGFAGPRVIEQTVREK-- 240 (304)
T ss_dssp H---HHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGGG--CCSE--EEECTTCBEESSCHHHHHHHHTSC--
T ss_pred H---HHHHHHHHHHHHHHHhcCCCCEEEEEE--CCCccHHHHHHHh--cCCE--EEEeCCcEEEeecHHHHHHHhCcc--
Confidence 1 1345677888874 45999999999 6677776332221 2477 999999999999998875442210
Q ss_pred HHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccc
Q 000086 2096 LLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2175 (2304)
Q Consensus 2096 ~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~ 2175 (2304)
++ +...++..+.+.|+||.||+..+
T Consensus 241 -------------------------l~------------------------------~~~~~Ae~~~~~Glvd~Vv~~~e 265 (304)
T 2f9y_B 241 -------------------------LP------------------------------PGFQRSEFLIEKGAIDMIVRRPE 265 (304)
T ss_dssp -------------------------CC------------------------------TTTTBHHHHGGGTCCSEECCHHH
T ss_pred -------------------------CC------------------------------cccCCHHHHHhcCCccEEeCcHH
Confidence 11 01136778889999999999888
Q ss_pred hHHHHHHHH
Q 000086 2176 SRSFFCRRL 2184 (2304)
Q Consensus 2176 tR~~~~~~L 2184 (2304)
.|..+...|
T Consensus 266 l~~~l~~ll 274 (304)
T 2f9y_B 266 MRLKLASIL 274 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777654433
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=228.20 Aligned_cols=241 Identities=14% Similarity=0.059 Sum_probs=183.3
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEE-------CCCHHHHHHhcCHHHHHHHHHHCCCCcCCC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL-------GPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fi-------GPs~eam~~lgDK~~sr~laq~aGVPtpp~ 190 (2304)
.+.+.|+++|++.++|+++.| ++..|.+.+...++.++ ||+..++..++||..++++++++|||+|+|
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg-----~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~ 507 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILD-----ENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQS 507 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-----TTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCE
T ss_pred CCHHHHHHHHHHhCCCEEEEC-----CCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCE
Confidence 357899999999999999865 55556655555555554 456799999999999999999999999998
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHh-hccCCcEEEeecCCCCCcCeEEE----CCHHHHHHHHHHHHhh
Q 000086 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKV----HNDDEVRALFKQVQGE 265 (2304)
Q Consensus 191 s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V----~s~eEL~~a~~~~~~e 265 (2304)
.. +.+.+++.+++ +.+||||||||..|+||+||+++ ++.+++.++++.+...
T Consensus 508 ~~-----------------------~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 508 VE-----------------------FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp EE-----------------------ESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred EE-----------------------ECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 75 67888887776 78999999999999999999999 8999999999887654
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccc-c------------------ccc---cc-------------
Q 000086 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS-V------------------QRR---HQ------------- 310 (2304)
Q Consensus 266 ~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcS-v------------------qrr---~q------------- 310 (2304)
+..++||+|++| +|++|.++++ +++....|... + .+| |.
T Consensus 565 --~~~vlVEefI~G-~Ei~v~Vlgg---kvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~ 638 (757)
T 3ln7_A 565 --DKEVMVEDYLVG-TEYRFFVLGD---ETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQ 638 (757)
T ss_dssp --CSSEEEEECCCS-EEEEEEEETT---EEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHH
T ss_pred --CCcEEEEEcCCC-cEEEEEEECC---EEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHH
Confidence 568999999986 8999999864 66665554321 0 011 00
Q ss_pred ------------------eEE--------EeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc-------cCC
Q 000086 311 ------------------KII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETG 357 (2304)
Q Consensus 311 ------------------Kii--------eeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~-------~~g 357 (2304)
++. .++-+...+.++.+++.+.|.++++++|+. .+.||++.+. +.+
T Consensus 639 ~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~ 717 (757)
T 3ln7_A 639 LQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLT 717 (757)
T ss_dssp HHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTT
T ss_pred HHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCC
Confidence 000 001112234456788999999999999985 7789999872 235
Q ss_pred cEEEEEeccCCCCC-cceehhhhcCCHHHHHHHHHcC
Q 000086 358 EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMG 393 (2304)
Q Consensus 358 ~~yfLEINpRlqge-hpvtE~vtGVDL~~~qL~iA~G 393 (2304)
++.+||+|++++-. |...-..+|.|+....+.....
T Consensus 718 ~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~lfp 754 (757)
T 3ln7_A 718 SWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLFP 754 (757)
T ss_dssp TCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHHCT
T ss_pred CeEEEEEcCCcchhhhhccccCCCCchHHHHHHHhcC
Confidence 78999999998854 3222235799999998887653
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=199.90 Aligned_cols=285 Identities=11% Similarity=0.049 Sum_probs=178.7
Q ss_pred cEEEEECch--------HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccE-EEEccCCCCCCCccC
Q 000086 49 HSILIANNG--------MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ-FVEVPGGTNNNNYAN 119 (2304)
Q Consensus 49 ~kILIan~G--------~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe-~v~vp~~~~~~sY~d 119 (2304)
.||+|+..| ..+..++++++++||+++ +..+.+..... ....++. .+.+++. ...|..
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~----------~~d~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 68 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELH----------YMEMGDLYLIN-GEARAHTRTLNVKQN--YEEWFS 68 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEE----------EECGGGEEEET-TEEEEEEEEEEECSC--SSCCEE
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEE----------EEchhHeEEEC-CeEEEEEeeeEeccC--ccccee
Confidence 367777766 357889999999999985 12222111000 0001221 2222211 112211
Q ss_pred HH--HHHHHHHHcCCCEEEeCCCcCCC-----CCchHHHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCC
Q 000086 120 VQ--LIVEMAEMTRVDAVWPGWGHASE-----IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2304)
Q Consensus 120 vd--~Ii~iA~~~~vDaV~pG~G~~SE-----n~~la~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~ 192 (2304)
.+ .+. ...++|+|+++.+...+ ...+.+.|+..|+.++ ++++++..+.||..++++++ |+|+|..
T Consensus 69 ~~~~~~~---~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~ 140 (316)
T 1gsa_A 69 FVGEQDL---PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLV 140 (316)
T ss_dssp EEEEEEE---EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEE
T ss_pred ccCcccc---ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEE
Confidence 00 001 11368999987542211 1134566667898876 78999999999999999988 9999765
Q ss_pred CCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEEC-CHHHHHHHHHHHHhhCCCCcE
Q 000086 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH-NDDEVRALFKQVQGEVPGSPI 271 (2304)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~-s~eEL~~a~~~~~~e~~~~~i 271 (2304)
+.+.+++.++++++| |+|+||..|+||+||++++ +.+++..+++.+.. ....++
T Consensus 141 -----------------------~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-~~~~~~ 195 (316)
T 1gsa_A 141 -----------------------TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-HGTRYC 195 (316)
T ss_dssp -----------------------ESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-TTTSCE
T ss_pred -----------------------eCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-cCCceE
Confidence 678889888888899 9999999999999999999 88999888776542 123689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEE-eeccccc-c-ccc--cceEEEeCCCCCCCHHHHHHHHHHHHHHHHH---CCce
Q 000086 272 FIMKVASQSRHLEVQLLCDQYGNVAA-LHSRDCS-V-QRR--HQKIIEEGPITVAPLETVKKLEQAARRLAKC---VNYV 343 (2304)
Q Consensus 272 ~VEeyI~g~reieVqvl~D~~G~vi~-l~~RdcS-v-qrr--~qKiieeaPa~~l~~e~~~~m~e~A~rlaka---lGy~ 343 (2304)
++|+|+++.+++++.++..+ |+++. ...|... . .+. |.. -...|.. +++ ++.+.+.+++++ +|+
T Consensus 196 lvqe~i~~~~~~~~~v~~~~-g~~~~~~~~r~~~~~~~~~~~~~g-g~~~~~~-~~~----~~~~~a~~~~~~l~~~g~- 267 (316)
T 1gsa_A 196 MAQNYLPAIKDGDKRVLVVD-GEPVPYCLARIPQGGETRGNLAAG-GRGEPRP-LTE----SDWKIARQIGPTLKEKGL- 267 (316)
T ss_dssp EEEECCGGGGGCEEEEEEET-TEECSEEEEEECCSSCSCCCGGGT-CEEEEEE-CCH----HHHHHHHHHHHHHHHTTC-
T ss_pred EEecccCCCCCCCEEEEEEC-CEEeeeEEEEeCCCCCceeEEccC-CccccCC-CCH----HHHHHHHHHHHHHHhCCC-
Confidence 99999987324444444332 44443 2222100 0 000 000 0011332 333 344555555544 676
Q ss_pred eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcC
Q 000086 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2304)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G 393 (2304)
+.+.+||+ |. ||||+|||..++...++..+|+|+.++.++...+
T Consensus 268 ~~~~vD~~-----g~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 268 IFVGLDII-----GD-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp CEEEEEEE-----TT-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHH
T ss_pred cEEEEEec-----CC-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHH
Confidence 56679988 33 8999999976556666678999999999887654
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=188.44 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=143.3
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHH-----CCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccc
Q 000086 131 RVDAVWPGWGHASEIPELPDTLST-----KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2304)
Q Consensus 131 ~vDaV~pG~G~~SEn~~la~~l~~-----~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~ 205 (2304)
.+|+|++..+. +...+...|+. .|+.++ +++++++.+.||..++++++++|||+|+|..
T Consensus 55 ~~d~v~~~~~~--~~~~~~~~l~~~~~~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~------------- 118 (324)
T 1z2n_X 55 EPNAIITKRTH--PVGKMADEMRKYEKDHPKVLFL-ESSAIHDMMSSREEINALLIKNNIPIPNSFS------------- 118 (324)
T ss_dssp CCSEEEECCSC--SSSHHHHHHHHHHHHCTTSEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCEEE-------------
T ss_pred CceEEEEeccc--hHHHHHHHHHHHHHhCCCCeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE-------------
Confidence 57889887533 22234555554 688764 8999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHhhc--cCCcEEEeecCCCCC---cCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-
Q 000086 206 IPDDVYRQACVYTTEEAIASCQV--VGYPAMIKASWGGGG---KGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ- 279 (2304)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~--IGyPVVIKPs~GgGG---kGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g- 279 (2304)
+.+.+++.+++++ ++||+|+||..|.|| +|+.++++.++|.. ...++++|+|+++
T Consensus 119 ----------~~~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~---------~~~~~lvqe~i~~~ 179 (324)
T 1z2n_X 119 ----------VKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD---------IHFPCLCQHYINHN 179 (324)
T ss_dssp ----------ESSHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT---------CCSSEEEEECCCCT
T ss_pred ----------eCCHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh---------cCCCEEEEEccCCC
Confidence 6677888887777 459999999999999 99999999888652 1568999999985
Q ss_pred cceeeEEEEEcCCCCEEEeecccccccccc-------------------------ce-------------EEEeCCCCCC
Q 000086 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRH-------------------------QK-------------IIEEGPITVA 321 (2304)
Q Consensus 280 ~reieVqvl~D~~G~vi~l~~RdcSvqrr~-------------------------qK-------------iieeaPa~~l 321 (2304)
+++++|.+++ |.++... |.. ...-+ .| -+..++. .
T Consensus 180 g~~~~v~v~g---~~~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~--~ 252 (324)
T 1z2n_X 180 NKIVKVFCIG---NTLKWQT-RTS-LPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPI--L 252 (324)
T ss_dssp TCEEEEEEET---TEEEEEE-ECC-CCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTT--T
T ss_pred CcEEEEEEEC---CEEEEEE-ecC-cccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCc--c
Confidence 4677777664 3444331 111 00000 00 0000111 1
Q ss_pred CHHHH-HHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 322 PLETV-KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 322 ~~e~~-~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
+..+. +++.+.|.++++++|+. .+.|||++++++|++||||+|||++..
T Consensus 253 ~~~~~~~~i~~~a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 253 LNLTSEAEMRDLAYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp TTSCCHHHHHHHHHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred ccCCCHHHHHHHHHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 22222 68999999999999996 778999998546889999999998754
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-16 Score=211.33 Aligned_cols=243 Identities=15% Similarity=0.071 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHcCCCEEEeCCC--cCCCCCchHHHHHHCCCeEECCCH-HHHHHhcCHHHHHHHHHHCCCCcCCCCCCCc
Q 000086 119 NVQLIVEMAEMTRVDAVWPGWG--HASEIPELPDTLSTKGIIFLGPPA-TSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2304)
Q Consensus 119 dvd~Ii~iA~~~~vDaV~pG~G--~~SEn~~la~~l~~~GI~fiGPs~-eam~~lgDK~~sr~laq~aGVPtpp~s~~~~ 195 (2304)
+.+.|+++|++.++++++.+-+ +..........+...|. ..|+++ .++..++||..++++++++|||+|+|..
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g~-itg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~--- 504 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGN-MTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDE--- 504 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETTT-BCTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCC---
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecCC-eeCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 5789999999999999875532 22211110000100121 234444 4667778999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHh-hccCCcEEEeecCCCCCcCeEEEC---CHHHHHHHHHHHHhhCCCCcE
Q 000086 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKVH---NDDEVRALFKQVQGEVPGSPI 271 (2304)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V~---s~eEL~~a~~~~~~e~~~~~i 271 (2304)
+.+.+++.+++ +.+|||+||||..|++|+||.+|+ +.+++.++++.+... +..+
T Consensus 505 --------------------~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~--~~~v 562 (750)
T 3ln6_A 505 --------------------FTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE--DSAI 562 (750)
T ss_dssp --------------------EETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH--CSEE
T ss_pred --------------------ECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh--CCcE
Confidence 55666776766 778999999999999999999999 999999999987654 5789
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeecccccc------------------c-cc---cceEEE---------------
Q 000086 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------------Q-RR---HQKIIE--------------- 314 (2304)
Q Consensus 272 ~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSv------------------q-rr---~qKiie--------------- 314 (2304)
+||+|++| +|++|.+++| +++....|.... . +| |.+..+
T Consensus 563 lVEefI~G-~E~~v~Vvgg---~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~ 638 (750)
T 3ln6_A 563 LVEEYIEG-TEYRFFVLEG---DCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQ 638 (750)
T ss_dssp EEEECCCS-EEEEEEEETT---EEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHT
T ss_pred EEEeccCC-CEEEEEEECC---EEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHc
Confidence 99999986 8999999854 565544332210 0 00 111000
Q ss_pred -----e-------------------CCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEc-------cCCcEEEEE
Q 000086 315 -----E-------------------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETGEYYFLE 363 (2304)
Q Consensus 315 -----e-------------------aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~-------~~g~~yfLE 363 (2304)
. +-+...+.++.+++.+.|+++++++|+. .+.||++.+. +.+++++||
T Consensus 639 g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiE 717 (750)
T 3ln6_A 639 GYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIE 717 (750)
T ss_dssp TCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEE
T ss_pred CCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEE
Confidence 0 0011123456678999999999999987 8889999873 245789999
Q ss_pred eccCCCCC-cceehhhhcCCHHHHHHHHHc
Q 000086 364 LNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 364 INpRlqge-hpvtE~vtGVDL~~~qL~iA~ 392 (2304)
+|++++-. |......+|.|+....+....
T Consensus 718 vN~~pg~~~h~~p~~g~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 718 LNFNPLMYMHTYCQEGPGQSITPRILAKLF 747 (750)
T ss_dssp EESSCCCHHHHSCSBSCCCCCHHHHHHHHC
T ss_pred EcCCcchhhhcCcccCCCCcHHHHHHHHhC
Confidence 99999865 333334689999998887653
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-16 Score=182.83 Aligned_cols=172 Identities=14% Similarity=0.200 Sum_probs=133.9
Q ss_pred cCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCC-----CCCcC
Q 000086 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-----GGGKG 245 (2304)
Q Consensus 171 gDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-----gGGkG 245 (2304)
-||..++++++++|||+|+|.. +++.+++.++++++||||||||..+ ++|.|
T Consensus 20 l~k~~~k~ll~~~GIp~p~~~~-----------------------~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gG 76 (238)
T 1wr2_A 20 MVEYEAKQVLKAYGLPVPEEKL-----------------------AKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKV 76 (238)
T ss_dssp ECHHHHHHHHHTTTCCCCCCEE-----------------------ESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTC
T ss_pred CCHHHHHHHHHHcCcCCCCeEE-----------------------eCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCC
Confidence 4999999999999999999876 7889999999999999999999999 77888
Q ss_pred eEE-ECCHHHHHHHHHHHHhhCC-------CCcEEEEEeccccceeeEEEEEcC-CCCEEEeeccccccccccceEEEeC
Q 000086 246 IRK-VHNDDEVRALFKQVQGEVP-------GSPIFIMKVASQSRHLEVQLLCDQ-YGNVAALHSRDCSVQRRHQKIIEEG 316 (2304)
Q Consensus 246 Ir~-V~s~eEL~~a~~~~~~e~~-------~~~i~VEeyI~g~reieVqvl~D~-~G~vi~l~~RdcSvqrr~qKiieea 316 (2304)
+.+ ++|++++.++++++..... ...++||+|+++++|++|.++.|. .|.++.++.....+.-.+...+...
T Consensus 77 v~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~ 156 (238)
T 1wr2_A 77 VMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLV 156 (238)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEES
T ss_pred EEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecC
Confidence 998 7999999999998865431 268999999998899999999998 6777666531111111111122223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE------------EEEccCCc-EEEEEeccCCC
Q 000086 317 PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY------------LYSMETGE-YYFLELNPRLQ 369 (2304)
Q Consensus 317 Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf------------l~d~~~g~-~yfLEINpRlq 369 (2304)
| ++++...+|.+.+.+...++||+|...+++ ++. +.++ +++|||||++-
T Consensus 157 P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~-~~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 157 P---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVD-DLKDYIKEMDLNPVFV 218 (238)
T ss_dssp S---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHH-HTTTTEEEEEEEEEEE
T ss_pred C---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH-cCCCCeEEEeccCeEE
Confidence 4 789999999999999999999999866652 122 1344 99999999874
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-16 Score=156.30 Aligned_cols=97 Identities=39% Similarity=0.652 Sum_probs=93.2
Q ss_pred EEeCceeccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000086 673 LIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2304)
Q Consensus 673 ~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~L 751 (2304)
++++++|.++...++..|.||++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|. + +++|+.|.+|++|
T Consensus 3 ~~~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l 81 (100)
T 2dn8_A 3 SGSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVV 81 (100)
T ss_dssp CCCCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEE
T ss_pred ccCCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEE
Confidence 4688999999999999999999999999999999999999999999999999999999999999 7 9999999999999
Q ss_pred EEEecCCCCccccCCCCCC
Q 000086 752 ARLDLDDPSAVRKAEPFYG 770 (2304)
Q Consensus 752 a~l~~~~~~~v~~~~~f~g 770 (2304)
++|...++..+..+.||+|
T Consensus 82 ~~i~~~~~~~v~~~~~~~~ 100 (100)
T 2dn8_A 82 ARLELDDPSKVHPSGPSSG 100 (100)
T ss_dssp EEECCSCSCCCCSCCCCCC
T ss_pred EEEEcCCccEEEeccccCC
Confidence 9999999999999999975
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=190.90 Aligned_cols=153 Identities=21% Similarity=0.231 Sum_probs=120.8
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccCC--------CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1966 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~--------a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~ 1966 (2304)
....+|++|+. |||+|||.|+...| +++||||+|+|+|+||.|+++|+++.
T Consensus 60 GkltaRERI~~-----------LlD~GSF~El~~~~~~~~~~~~~dgVVtG~G~I~Gr~V~V~a~D~tv~---------- 118 (588)
T 3gf3_A 60 GQLSAMQRINA-----------LIDPGTWCPLNSLFNPENNKFGTTNIVNGLGRVDGKWVYIVASDNKKM---------- 118 (588)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSSCSEEEEEEEETTEEEEEEEECTTSG----------
T ss_pred CCCCHHHHHHH-----------HcCCCceEEccccccccccCCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 56889999997 89999999997755 46999999999999999999988765
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHH---HHcCCCCEEE
Q 000086 1967 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQPVFV 2043 (2304)
Q Consensus 1967 p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP~i~ 2043 (2304)
||+|++..++|+.|++++|.++++|||+|+|++|...+..++...-+...++++.+ ++...+|+|+
T Consensus 119 -----------gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l~~~g~if~~~~~ls~~~iP~Is 187 (588)
T 3gf3_A 119 -----------AGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIV 187 (588)
T ss_dssp -----------GGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEE
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccchhhHHHHHHHHHHHhcCCCCEEE
Confidence 89999999999999999999999999999999997765322210001122344444 5566899999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+ |.++.||+|.++. +++ ++++|+|.+++.+|+-+
T Consensus 188 vv~-Gp~~gGgAy~a~~----~~v--im~~~~a~i~~aGP~vI 223 (588)
T 3gf3_A 188 GIY-GTNPAGGGYHSIS----PTI--LIAHQDANMAVGGAGIL 223 (588)
T ss_dssp EEC-SEEETHHHHHHHS----SSE--EEEETTCEEESSCCC--
T ss_pred EEe-CCCCchhhhHhhC----CeE--EEEECCcEEEecChhhh
Confidence 999 3445566776443 466 78999999999999754
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=188.09 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=122.2
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccCC--------CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1966 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~--------a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~ 1966 (2304)
....+|++|+. |||+|||.|+...| +.+||||+|+|+|+||.|+++|+++.
T Consensus 59 gkltareRI~~-----------LlD~gsF~E~~~~y~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~---------- 117 (587)
T 1pix_A 59 GELTALQRIEK-----------LVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKL---------- 117 (587)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSCCSEEEEEEEETTEEEEEEEECTTTT----------
T ss_pred CCCCHHHHHHH-----------HcCCCCceEhhhhcchhhhcCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 45689999997 89999999998755 48999999999999999999988655
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhh----hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1967 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF----EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1967 p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~----~gilk~ga~iv~al~~~~vP~i 2042 (2304)
||+|++..++|+.|+++.|.++++|||+|+|++|...+...+. .+.. ..+..+..++...+|+|
T Consensus 118 -----------gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGArlqe~~~~l~~~~~~g-~i~~~~~~ls~~giP~I 185 (587)
T 1pix_A 118 -----------AGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGG-TPFFRNAELNQLGIPVI 185 (587)
T ss_dssp -----------TTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTT-HHHHHHHHHHHTTCCEE
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccchhccccccHH-HHHHHHHHHhCCCCCEE
Confidence 8999999999999999999999999999999999554433331 1222 23444555777889999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhh---hhcchh
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIE---IKFRTK 2094 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~---i~~r~~ 2094 (2304)
++|+ |.+++||+|. .. .|++ +++.++|.+++.+|+.+-. |.|++.
T Consensus 186 svv~-G~~~GGga~~--a~---~d~v-im~e~~a~i~~~GP~vi~~~~~~~~~d~ 233 (587)
T 1pix_A 186 VGIY-GTNPAGGGYH--SI---SPTV-IIAHEKANMAVGGAGIMGGMNPKGHVDL 233 (587)
T ss_dssp EEEC-SEEETHHHHH--HH---SSSE-EEEETTCEEESCCCTTCCSCCSSSSCCH
T ss_pred EEEe-cCCcHHHHHH--Hh---cCce-EEecCCcEEEecCHHHHhhhccccccch
Confidence 9999 3444455665 32 2431 5667789999999954433 445444
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=192.47 Aligned_cols=194 Identities=17% Similarity=0.176 Sum_probs=143.1
Q ss_pred cccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHH
Q 000086 1596 VTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACA 1675 (2304)
Q Consensus 1596 ~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~ 1675 (2304)
..+.++|+ | .|.|+....| .+||++..++ +|++|.|++||++|++||+|+...+|+.|++++|.+
T Consensus 294 ~I~~l~D~--g----sF~E~~~~~~---~~vVtG~ari------~G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~ 358 (522)
T 1x0u_A 294 IIYKIVDN--G----EFLEVHKHWA---QNIIVGFARI------AGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDA 358 (522)
T ss_dssp HHHHHSGG--G----CCEEETTTSC---TTEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC--C----ceEEecCCCc---ccEEEEEEEE------CCEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhh
Confidence 33445555 4 4667665443 4589999887 999999999999999999999999999999999999
Q ss_pred cCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccc
Q 000086 1676 KKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKE 1755 (2304)
Q Consensus 1676 ~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~ 1755 (2304)
.++|+|+|.+++|++++.+.+-...++ .++++ + .
T Consensus 359 ~~~Plv~l~ds~G~~~G~~~E~~G~~~---------------------~~Ak~---l-----~----------------- 392 (522)
T 1x0u_A 359 FNIPLISLVDTPGYVPGTDQEYKGIIR---------------------HGAKM---L-----Y----------------- 392 (522)
T ss_dssp TTCCEEEEEEECCBCCSHHHHHTTHHH---------------------HHHHH---H-----H-----------------
T ss_pred CCCCEEEEecCCCCCCchHHHHHHHHH---------------------HHHHH---H-----H-----------------
Confidence 999999999999999975433211100 01110 0 0
Q ss_pred ccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc----cCEEEEecCcceEecChHHHHHhhcccccc-
Q 000086 1756 DGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL----GMRCIQRLDQPIILTGFSALNKLLGREVYS- 1830 (2304)
Q Consensus 1756 ~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l----gd~~I~~~~~~i~ltG~~al~~~lG~~vy~- 1830 (2304)
+++. ..+|+||+|+|+|+|||||.... +|+++|.+++.|++.||+..-..+-++.-.
T Consensus 393 ----------------~~~~--~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~gpegaa~Il~r~~i~~ 454 (522)
T 1x0u_A 393 ----------------AFAE--ATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQQ 454 (522)
T ss_dssp ----------------HHHH--CCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSCHHHHHHHHTSSSSSS
T ss_pred ----------------HHHh--CCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecCHHHHHHHHhhhhhhc
Confidence 0000 23799999999999998887766 999999999999999999654444332210
Q ss_pred --cc------------cccCcceeecccCceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1831 --SH------------MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1831 --s~------------~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
++ +.++.+..+...|++|.|++ ..+.-..+.++|..+.
T Consensus 455 ~~d~~~~~~~l~~~y~~~~~~~~~~~~~G~iD~II~-p~~tR~~L~~~L~~~~ 506 (522)
T 1x0u_A 455 ASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIE-PKDTRRVIVAGLEMLK 506 (522)
T ss_dssp SSSSSSSSHHHHHHHHHHHSSSHHHHHTTSSSEECC-GGGHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCcEeEC-HHHHHHHHHHHHHHHh
Confidence 01 13577788889999999995 6677777777777664
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=183.45 Aligned_cols=148 Identities=19% Similarity=0.180 Sum_probs=121.3
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------CCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+... .+.+||||.|+|+|+||.|+++|++++
T Consensus 42 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~l~~~~~~~dgvvtG~G~I~Gr~v~v~a~D~t~~--- 107 (523)
T 1on3_A 42 GKQTARERLNN-----------LLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVM--- 107 (523)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCTTTTTTCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------hcCCCccEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCCcc---
Confidence 45789999997 8999999998632 368999999999999999999998877
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||++++..++|+.|+++.|.+.++|+|+|+|+.| ..|++++.. ..++++.++..+
T Consensus 108 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGG-----ARmqeg~~sl~~~~~i~~~~~~~ 164 (523)
T 1on3_A 108 ------------------GGSAGETQSTKVVETMEQALLTGTPFLFFYDSGG-----ARIQEGIDSLSGYGKMFFANVKL 164 (523)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECS-----BCGGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CChhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988 445555543 556776665553
Q ss_pred --CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2038 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2038 --~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.+|+|++|+ +.+++|++|... -.|+ ++|.|+|.+++.+|+-+
T Consensus 165 s~~iP~Isvv~-gp~~GG~a~s~~----l~D~--ii~~~~a~i~~aGP~vI 208 (523)
T 1on3_A 165 SGVVPQIAIIA-GPCAGGASYSPA----LTDF--IIMTKKAHMFITGPQVI 208 (523)
T ss_dssp TTTSCEEEEEE-EEEESGGGHHHH----HSSE--EEEETTCEEESSCHHHH
T ss_pred cCCCCEEEEEc-CCCchHHHHHHh----hCCe--EEEeCCCEEEecCHHHH
Confidence 499999999 445555566442 2487 89999999999999654
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=181.31 Aligned_cols=148 Identities=21% Similarity=0.185 Sum_probs=121.2
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------CCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+... .+.+||||+|+|+|++|.|+++|++++
T Consensus 55 gkltareRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~--- 120 (548)
T 2bzr_A 55 GKLTARERIYA-----------LLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVF--- 120 (548)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCSTTGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCccc---
Confidence 45789999997 8999999998532 368999999999999999999998877
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||+|++..++|+.|+++.|.+.++|+|+|+|+.|. .|++++.. ..++++.++..+
T Consensus 121 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGGA-----Rmqeg~~sl~~~~~i~~~~~~~ 177 (548)
T 2bzr_A 121 ------------------GGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGA-----RIQEGVVSLGLYSRIFRNNILA 177 (548)
T ss_dssp ------------------GGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSC-----CGGGTTHHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCCC-----CchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999884 44444443 557777776665
Q ss_pred C--CCEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2038 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~--vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
. +|+|++|+ +.+++|++|.. . -.|+ ++|.|+ |.+++.+|+-+
T Consensus 178 s~~iP~Isvv~-gp~~GG~a~s~-a---l~D~--ii~~~~~a~i~~aGP~vI 222 (548)
T 2bzr_A 178 SGVIPQISLIM-GAAAGGHVYSP-A---LTDF--VIMVDQTSQMFITGPDVI 222 (548)
T ss_dssp TTTSCEEEEEC-SEEESGGGHHH-H---HSSE--EEEETTTCEEESSCHHHH
T ss_pred cCCCcEEEEec-CCCchHHHHHH-H---hCCe--EEeccCceeEEeccHHHH
Confidence 4 99999999 34444455543 2 2587 899997 99999999654
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=183.48 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=117.1
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------CCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+.. ..+.+||||+|+|+|+||.|+++|++++
T Consensus 45 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~i~Gr~v~v~a~D~t~~--- 110 (527)
T 1vrg_A 45 GKLTAWERLEL-----------LLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVM--- 110 (527)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCGGGGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HccCCceEEcccccccCCcccCcccccCCCCcEEEEEEEECCEEEEEEEEecccc---
Confidence 46789999997 899999999832 1358999999999999999999988766
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHH--cC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLR--TY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~--~~ 2037 (2304)
||++++..++|+.|+++.|.++++|+|+|+|+.|...+...+ .+...++++.++. ..
T Consensus 111 ------------------gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~qeg~~---~l~g~~~~~~~~~~~s~ 169 (527)
T 1vrg_A 111 ------------------GGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVD---ALAGYGEIFLRNTLASG 169 (527)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHH---HHHHHHHHHHHHHHHTT
T ss_pred ------------------CccccHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCccchhH---HHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999955432211 2223344444433 45
Q ss_pred CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2038 KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
.+|+|++|+ |++.||+..... + .|+ ++|.|+ |.+++.+|+.+
T Consensus 170 ~iP~Isvv~--Gp~~GG~a~s~a--l-~D~--vi~~~~~a~i~~aGP~vi 212 (527)
T 1vrg_A 170 VVPQITVIA--GPCAGGAVYSPA--L-TDF--IVMVDQTARMFITGPNVI 212 (527)
T ss_dssp TSCEEEEEE--EEEBGGGGHHHH--H-SSE--EEEETTTCBCBSSCHHHH
T ss_pred CCCEEEEEe--CCCchHHHHHHH--c-CCe--EEEecCceEEEecCHHHH
Confidence 699999999 555554433333 2 577 899998 99999999754
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=172.82 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=124.8
Q ss_pred eEEEEEEEeecCcccCCCcEEEEEEEeccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchh
Q 000086 1624 IGMVAWCMEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAE 1695 (2304)
Q Consensus 1624 ~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~--------~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e 1695 (2304)
.+||+|..++ +|++|+|++||.++ ++|++++...+|+.|++++|.+.++|+|+|.+++|+|+| +
T Consensus 105 ~~vV~G~gri------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~Ga~~g--~ 176 (327)
T 2f9i_A 105 PAMIGGIGFL------NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPG--K 176 (327)
T ss_dssp TTEEEEEEEE------TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCC--H
T ss_pred cceEEEEEEE------CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCcc--h
Confidence 5699999887 99999999999998 999999999999999999999999999999999999999 4
Q ss_pred hhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccc
Q 000086 1696 EVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSR 1775 (2304)
Q Consensus 1696 ~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ 1775 (2304)
+.....++. .+ ...+..+
T Consensus 177 ~ae~~g~~~--------~~-------a~~l~al----------------------------------------------- 194 (327)
T 2f9i_A 177 AAEERGQSE--------SI-------ATNLIEM----------------------------------------------- 194 (327)
T ss_dssp HHHHTTHHH--------HH-------HHHHHHH-----------------------------------------------
T ss_pred hhhhhhhHH--------HH-------HHHHHHH-----------------------------------------------
Confidence 333322211 00 0000000
Q ss_pred ccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccccc----ccCcceeecccCceEEEe
Q 000086 1776 AYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTV 1851 (2304)
Q Consensus 1776 ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~----~lGG~~i~~~nGv~d~~v 1851 (2304)
+-..+|+|++|+|+|+||||+++.+||++||.+++.+.+.||...-..+-+.+-..++ ...+++-+...|++|.|+
T Consensus 195 ~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v~~peg~a~il~~~~~~a~~A~e~~~itA~~a~~~GlVd~VV 274 (327)
T 2f9i_A 195 ASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVI 274 (327)
T ss_dssp HTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBSSCHHHHHHHHSSCGGGHHHHHHHHTCBHHHHHHTTSSSEEE
T ss_pred HhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEeecCchHHHHHHHHHhcchHHHHHHcCCCHHHHHHcCCceEEe
Confidence 0023799999999999999999999999999999999999998877766554300011 344555667899999999
Q ss_pred cCc
Q 000086 1852 SDD 1854 (2304)
Q Consensus 1852 ~dd 1854 (2304)
+..
T Consensus 275 ~ep 277 (327)
T 2f9i_A 275 SEP 277 (327)
T ss_dssp CCC
T ss_pred cCC
Confidence 743
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=181.84 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=120.8
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------CCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
...++|++|+. |||+|||.|+.. .++.+||||+|+|+|++|.|+++|++++
T Consensus 44 gkl~aReRI~~-----------LlD~gSF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~tv~--- 109 (530)
T 3iav_A 44 GKLTARERIDL-----------LLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVF--- 109 (530)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCCeEEcCCccccCCCCcccccccCCCCcEEEEEEEECCEEEEEEEECCCcc---
Confidence 56899999997 899999999853 3578999999999999999999998866
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||+|++..++|+.|+++.|.+.++|||+|+|+.|.. |++|+.. ..++++.+++.+
T Consensus 110 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGaR-----mqEg~~~l~~~~~i~~~~~~~ 166 (530)
T 3iav_A 110 ------------------GGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGAR-----IQEGVASLGAYGEIFRRNTHA 166 (530)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBC-----GGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------eEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc-----hhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999853 4455433 567787777665
Q ss_pred C--CCEEEEEcCCCcCCchhhhhcccccCCccceeeccc-CcEEEeeCccch
Q 000086 2038 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADR-TAKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~--vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p-~A~~gvl~Peg~ 2086 (2304)
+ +|+|++|. |.+.||+..... + .|+ ++|.+ +|.+++.+|+-+
T Consensus 167 s~~iP~Isvv~--G~~~GG~a~~~a--l-~D~--~im~~~~a~i~~aGP~vi 211 (530)
T 3iav_A 167 SGVIPQISLVV--GPCAGGAVYSPA--I-TDF--TVMVDQTSHMFITGPDVI 211 (530)
T ss_dssp TTTSCEEEEEC--SEEEGGGGHHHH--H-SSE--EEEETTTCEEESSCHHHH
T ss_pred cCCCCEEEEEe--cCcchHHHHHHH--h-CCE--EEEecCCcEEEecCHHHH
Confidence 4 89999999 555554433333 2 577 77665 599999999754
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=174.38 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=118.9
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------CCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+... .+.+||||.|+|+|++|.|+++|++++
T Consensus 52 gkltaReRI~~-----------LlD~gSF~E~~~~~~~~~~~~~~~~~~~~~dgVVtG~G~I~Gr~v~v~a~D~t~~--- 117 (531)
T 3n6r_B 52 GKLTARERVDL-----------LLDEGSFEEFDMFVTHRCTDFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVL--- 117 (531)
T ss_dssp TCCCHHHHHHH-----------HSSSSCCEEECTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEcCCccccCCcccccccccCCCCCEEEEEEEECCEEEEEEEECCCcc---
Confidence 56789999997 8999999998532 267899999999999999999998766
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHH--HHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2037 (2304)
||+|++..++|+.|+++.|.+.++|+|+|+|+.|. .|++|+.. ..++++.++..+
T Consensus 118 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGA-----Rmqeg~~sl~~~~~i~~~~~~~ 174 (531)
T 3n6r_B 118 ------------------GGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGA-----RIQEGVDSLAGYGEVFQRNIMA 174 (531)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCB-----CGGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------cccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCcc-----ccCcccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999883 44455543 456777665544
Q ss_pred --CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEeeCccch
Q 000086 2038 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2086 (2304)
Q Consensus 2038 --~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl~Peg~ 2086 (2304)
.+|+|++|+ |.+.||+...... .|+ +++.++ |.+++.+|+-+
T Consensus 175 s~~iP~Isvv~--Gp~~GG~a~s~a~---~D~--vi~~~~~a~i~~aGP~vI 219 (531)
T 3n6r_B 175 SGVVPQISMIM--GPCAGGAVYSPAM---TDF--IFMVKDSSYMFVTGPDVV 219 (531)
T ss_dssp TTTSCEEEEEC--SCCBGGGGHHHHH---SSE--EEEETTTCBCBSSCHHHH
T ss_pred hCCCCEEEEEe--CCcchHHHHHhhh---CCE--EEEecCCceEeecCHHHH
Confidence 589999999 4555544333332 477 788775 99999999654
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=170.84 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=124.0
Q ss_pred eEEEEEEEeecCcccCCCcEEEEEEEecc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchh
Q 000086 1624 IGMVAWCMEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAE 1695 (2304)
Q Consensus 1624 ~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t--------~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e 1695 (2304)
.+||+|..++ +|++|+|++||.. +++|++++...+|+.|++++|.+.++|+|+|.+++|||+| +
T Consensus 119 ~avV~G~ari------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvDt~Ga~~g--~ 190 (339)
T 2f9y_A 119 KAIVGGIARL------DGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPG--V 190 (339)
T ss_dssp TTEEEEEEEE------TTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCS--H
T ss_pred CcEEEEEEEE------CCEEEEEEEEeCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCccc--h
Confidence 4699999887 9999999999988 5999999999999999999999999999999999999999 4
Q ss_pred hhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccccccccc
Q 000086 1696 EVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSR 1775 (2304)
Q Consensus 1696 ~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ 1775 (2304)
+.....++. .+ ...+..+
T Consensus 191 ~aE~~g~~~--------~~-------a~~l~al----------------------------------------------- 208 (339)
T 2f9y_A 191 GAEERGQSE--------AI-------ARNLREM----------------------------------------------- 208 (339)
T ss_dssp HHHHTTHHH--------HH-------HHHHHHH-----------------------------------------------
T ss_pred HHHHHHHHH--------HH-------HHHHHHH-----------------------------------------------
Confidence 433322221 00 0000000
Q ss_pred ccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhccccccccc----ccCcceeecccCceEEEe
Q 000086 1776 AYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTV 1851 (2304)
Q Consensus 1776 ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~----~lGG~~i~~~nGv~d~~v 1851 (2304)
+-..+|+|++|+|+|+||||+++.+||++||.+++.+.+.||......+-+..-..++ ..-.++-+...|++|.|+
T Consensus 209 ~~~~vPvIavV~G~a~GGGa~~~~~~D~via~p~A~~~v~~Peg~asil~~~~~~~~~Aae~~~itA~~a~~~GlVd~VV 288 (339)
T 2f9y_A 209 SRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSII 288 (339)
T ss_dssp HTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSCSTTHHHHHHHHTCSHHHHHTTTSCSCCC
T ss_pred HhCCCCEEEEEeCCcCcHHHHHHhccCeeeecCCCEEEeeccchHHHHHHHhhccHHHHHHHcCCCHHHHHHcCCeeEEe
Confidence 0013799999999999999999999999999999999999999887766554300001 233445567899999999
Q ss_pred cCc
Q 000086 1852 SDD 1854 (2304)
Q Consensus 1852 ~dd 1854 (2304)
+..
T Consensus 289 ~ep 291 (339)
T 2f9y_A 289 PEP 291 (339)
T ss_dssp CCS
T ss_pred cCC
Confidence 743
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-13 Score=158.99 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=153.5
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHCCCeEECCCHHHHHHhcCH----HHHHHHHHHCCC---CcCCCCCCCccCC
Q 000086 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2304)
Q Consensus 131 ~vDaV~pG~G~~S--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~sr~laq~aGV---Ptpp~s~~~~~~~ 198 (2304)
..|+|++-.+... ++. .+...++..|++++ ++++++..|+|| ..+.++++++|+ |.+|...
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~------ 140 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY------ 140 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEe------
Confidence 5699998765443 221 23466888999998 999999999999 567788889998 7666332
Q ss_pred CCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
..+.. +..+..|||+|+||..|+.|+||.++++.+++....+..... +..+++|||++
T Consensus 141 -----------------~~~~~---~~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~--~~~~~vQefI~ 198 (309)
T 1i7n_A 141 -----------------YPNHR---EMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFID 198 (309)
T ss_dssp -----------------ESSGG---GGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------eCChh---hhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeecC
Confidence 11111 235568999999999999999999999999999888765433 36789999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccccceEEEeC---CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEG---PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieea---Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
.++.+.|.++++ ++++..-|--+-..+.. +..+ |.+ ++ +++++.|.++++++|--+.+.||++.+ .
T Consensus 199 ~g~DiRv~VvGg---~v~a~~Rr~~~g~wrtN--~~~~~~e~~~-l~----~e~~~la~~A~~a~gGldi~GVDll~~-~ 267 (309)
T 1i7n_A 199 AKYDIRVQKIGN---NYKAYMRTSISGNWKTN--TGSAMLEQIA-MS----DRYKLWVDACSEMFGGLDICAVKAVHG-K 267 (309)
T ss_dssp EEEEEEEEEETT---EEEEEEEESSCTTTSCS--CCCSSEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-T
T ss_pred CCceEEEEEECC---EEEEEEEEcCCCCCeec--CCcceeeecC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-C
Confidence 888999999875 45543222101111111 1111 111 22 457888999999995457888999998 3
Q ss_pred CCcEEEEEecc--CCCCCcceehhhhcCCHHHHHHHH
Q 000086 356 TGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAV 390 (2304)
Q Consensus 356 ~g~~yfLEINp--RlqgehpvtE~vtGVDL~~~qL~i 390 (2304)
+|.++++|+|. -++-+ -++..++.++.+..+..
T Consensus 268 ~g~~~V~EVN~~~~P~~~--~~~~~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 268 DGKDYIFEVMDCSMPLIG--EHQVEDRQLITDLVISK 302 (309)
T ss_dssp TSCEEEEEEECTTCCCCS--SCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCcc--chhhhhHHHHHHHHHHH
Confidence 67799999999 66543 34445777777777653
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=171.86 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCC-ceeccc-----CC-----CCeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLE-----GW-----ARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gs-F~E~~~-----~~-----a~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
....+|++|+. |||+|| |.|+.. .| +.+||||+|+|+|+||.|+++|+++.
T Consensus 72 gkltaReRI~~-----------LlD~gS~F~E~~~l~~~~~y~~~~~~dgVVtG~G~I~Gr~v~V~a~D~tv~------- 133 (555)
T 3u9r_B 72 GKLLVRERINR-----------LLDPGSPFLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVK------- 133 (555)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEEECTTTTTTTSSSCCGGGGEEEEEEEETTEEEEEEEECTTTG-------
T ss_pred CCCCHHHHHHH-----------HcCCCCCEEEEccccccccccccCCCCcEEEEEEEECCEEEEEEEECCccc-------
Confidence 46789999997 899999 999743 12 57999999999999999999988765
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhh---hHHHHHHHHHHHHHcCCCC
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFE---GILQAGSTIVENLRTYKQP 2040 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~---gilk~ga~iv~al~~~~vP 2040 (2304)
||++++..++|+.|+++.|.++++|||+|+|++|...+...+.- +.....+..+..++...+|
T Consensus 134 --------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~~~~~~i~~~~~~ls~~giP 199 (555)
T 3u9r_B 134 --------------GGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIP 199 (555)
T ss_dssp --------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSSTTSTTHHHHHHHHHHHTTCC
T ss_pred --------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcceeecccccHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999996544332210 1111223333445667899
Q ss_pred EEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccc
Q 000086 2041 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2041 ~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+|++|+ +.++.||+|..-- ..++ +++.|+|.+++.+|+-
T Consensus 200 ~Isvv~-G~~~GGga~~~a~---~d~v--im~e~~a~i~~aGP~v 238 (555)
T 3u9r_B 200 QIAVVM-GSCTAGGAYVPAM---SDET--VMVREQATIFLAGPPL 238 (555)
T ss_dssp EEEEEC-SCCBGGGGHHHHT---SSEE--EEETTTCBCBSSCHHH
T ss_pred EEEEEe-cCCCccHHHHHHh---CCce--EEecCCceEEEccHHH
Confidence 999999 3445556654222 2333 6678999999999954
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=160.33 Aligned_cols=219 Identities=15% Similarity=0.076 Sum_probs=153.1
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHCCCeEECCCHHHHHHhcCH----HHHHHHHHHCCC---CcCCCCCCCccCC
Q 000086 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2304)
Q Consensus 131 ~vDaV~pG~G~~S--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~sr~laq~aGV---Ptpp~s~~~~~~~ 198 (2304)
..|+|++-.+... ++. .+...++..|+.++ ++++++..|.|| ..+.++++++|+ |.++...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~------ 252 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTF------ 252 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEe------
Confidence 5699998765433 222 23566788999998 999999999999 567778889998 6555322
Q ss_pred CCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
+.+.. +..+..|||+||||..|.+|+||.++++.+++...++..... +..+++||||+
T Consensus 253 -----------------~~~~~---~~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~--~~~~~vQEfI~ 310 (422)
T 1pk8_A 253 -----------------YPNHK---EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT--KTYATAEPFID 310 (422)
T ss_dssp -----------------ESSGG---GCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TSCEEEEECCC
T ss_pred -----------------cCchh---hhhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc--CceEEEEeecC
Confidence 11111 134568999999999999999999999999999888765433 35788999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccc-c--ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRR-H--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr-~--qKiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
.++.+.|.++++ ++++..-|--+-..+ + .-..+ +.+ ++ +++++.|.++++++|--+.+.||++.+ +
T Consensus 311 ~g~DIRv~VVGg---~vva~~Rr~~~g~WrtNvg~g~~e--~i~-lt----~e~~elA~kAaka~gGldiaGVDlL~s-~ 379 (422)
T 1pk8_A 311 AKYDVRVQKIGQ---NYKAYMRTSVSGNWKTNTGSAMLE--QIA-MS----DRYKLWVDTCSEIFGGLDICAVEALHG-K 379 (422)
T ss_dssp EEEEEEEEEETT---EEEEEEEEESSSCSSTTSSCEEEE--EEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-T
T ss_pred CCceEEEEEECC---EEEEEEEEcCCCCceeccCceeee--eeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-C
Confidence 888999999875 455432221000011 1 00111 111 22 467889999999994347888999998 4
Q ss_pred CCcEEEEEecc--CCCCCcceehhhhcCCHHHHHHHHH
Q 000086 356 TGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 356 ~g~~yfLEINp--RlqgehpvtE~vtGVDL~~~qL~iA 391 (2304)
+|++|++|+|. .++-+ -++..++.|+.+..+...
T Consensus 380 dG~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 380 DGRDHIIEVVGSSMPLIG--DHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp TSCEEEEEEECTTCCCCT--TCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCcc--chhhhHHHHHHHHHHHHH
Confidence 67799999999 55433 344557888888877654
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=158.10 Aligned_cols=220 Identities=13% Similarity=0.048 Sum_probs=154.9
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHCCCeEECCCHHHHHHhcCH----HHHHHHHHHCCC---CcCCCCCCCccCC
Q 000086 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2304)
Q Consensus 131 ~vDaV~pG~G~~S--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~sr~laq~aGV---Ptpp~s~~~~~~~ 198 (2304)
..|+|++-.+... ++. .+...++..|++++ ++++++..|.|| ..+.+++.++|+ |.+|...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~------ 157 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTF------ 157 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEe------
Confidence 6799998865432 211 23566788999998 999999999999 667788899998 7666332
Q ss_pred CCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000086 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2304)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~ 278 (2304)
+.+. .+..+..|||+|+||..|..|+||.++++.+++....+..... +..+++|||++
T Consensus 158 -----------------~~~~---~~~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~--~~~~~vQefI~ 215 (344)
T 2p0a_A 158 -----------------FPNH---KPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA--KTYATTEAFID 215 (344)
T ss_dssp -----------------ESSS---TTCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------cCch---hhhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeccC
Confidence 1111 1234568999999999999999999999999999877655432 35788999999
Q ss_pred ccceeeEEEEEcCCCCEEEeeccccccccccc---eEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEcc
Q 000086 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ---KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2304)
Q Consensus 279 g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q---KiieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~ 355 (2304)
.++.+.|.++++ ++++..-|--+-..+.. -..+ +.+ ++ +++++.|.++++++|--+.+.||++.+ .
T Consensus 216 ~g~DiRv~VVGg---~vva~~R~~~~g~wrtN~~~~~~e--~~~-l~----~e~~~la~~Aa~a~gGldi~GVDll~~-~ 284 (344)
T 2p0a_A 216 SKYDIRIQKIGS---NYKAYMRTSISGNWKANTGSAMLE--QVA-MT----ERYRLWVDSCSEMFGGLDICAVKAVHS-K 284 (344)
T ss_dssp EEEEEEEEEETT---EEEEEEEEESSSCSSTTSSSEEEE--EEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-T
T ss_pred CCccEEEEEECC---EEEEEEEecCCCCCeecCCceEEE--eeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-C
Confidence 888999999875 45543221101001110 0111 221 22 457888999999995457888999998 3
Q ss_pred CCcEEEEEecc--CCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 356 TGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 356 ~g~~yfLEINp--RlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
+|.+|++|+|. .+.-+ -++..++.|+....++...
T Consensus 285 ~G~~~VlEVN~~~~P~~~--~~~~~~~~~Ia~~ii~~i~ 321 (344)
T 2p0a_A 285 DGRDYIIEVMDSSMPLIG--EHVEEDRQLMADLVVSKMS 321 (344)
T ss_dssp TSCEEEEEEECTTCCCCG--GGHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCccc--chhhhHHHHHHHHHHHHHH
Confidence 67799999999 54432 4455688898888887654
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=134.15 Aligned_cols=77 Identities=40% Similarity=0.677 Sum_probs=72.0
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCCC
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPS 760 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~~~ 760 (2304)
+++++.|+||++|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+.++|+.|.+|++|++|+..++.
T Consensus 2 ~~~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~~~G~~V~~G~~l~~i~~~~~~ 78 (84)
T 2kcc_A 2 ENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLELDDLE 78 (84)
T ss_dssp CCCTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECSCTTCCCCTTCCCEEEECSCSC
T ss_pred CCCCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEcCCCCEECCCCEEEEEeCCChh
Confidence 35678999999999999999999999999999999999999999999999998777999999999999999887763
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-14 Score=143.13 Aligned_cols=98 Identities=39% Similarity=0.558 Sum_probs=86.6
Q ss_pred HHhcCHHHHHHHHHHCCCCcCCCC--CCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcC
Q 000086 168 AALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 245 (2304)
Q Consensus 168 ~~lgDK~~sr~laq~aGVPtpp~s--~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkG 245 (2304)
..+.||..++++++++|||+|+|. . +.+.+++.++++++|||+||||..|+||+|
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~-----------------------~~~~~~~~~~~~~~~~P~vvKp~~~~~~~g 60 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGV-----------------------VKDAEEAVRIAREIGYPVMIKASAGGGGKG 60 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSC-----------------------BSSHHHHHHHHHHHCSSEEEEETTSCCTTT
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccc-----------------------cCCHHHHHHHHHhcCCCEEEEECCCCCCcc
Confidence 467899999999999999999987 4 678899999999999999999999999999
Q ss_pred eEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccceeeEEEE
Q 000086 246 IRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRHLEVQLL 288 (2304)
Q Consensus 246 Ir~V~s~eEL~~a~~~~~~----e~~~~~i~VEeyI~g~reieVqvl 288 (2304)
+++++|.+++..+++++.. ..++.+++||+|++|.+|++|+++
T Consensus 61 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 61 MRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 9999999999999988753 223468999999999789988765
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=158.44 Aligned_cols=175 Identities=13% Similarity=0.218 Sum_probs=121.9
Q ss_pred CCCeEECCCHHHHHHhcCHHHHHHHHHHC-------CCCcCCCCCCCccCCCCCcccccCcccccccccCC--HHHHHHH
Q 000086 155 KGIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYT--TEEAIAS 225 (2304)
Q Consensus 155 ~GI~fiGPs~eam~~lgDK~~sr~laq~a-------GVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s--~eea~~~ 225 (2304)
.|+.++ +++.++..+.||..|.+++.++ |||+|+|.. +.+ .+++.+.
T Consensus 100 ~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~-----------------------~~~~~~~~~~~~ 155 (346)
T 2q7d_A 100 PETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFME-----------------------LTSLCGDDTMRL 155 (346)
T ss_dssp TTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEE-----------------------ECSCCCTTHHHH
T ss_pred CCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEE-----------------------EeCCCHHHHHHH
Confidence 377776 9999999999999999999997 999999765 111 1223232
Q ss_pred h--hccCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc-ccceeeEEEEEcCCCCEEEeec
Q 000086 226 C--QVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS-QSRHLEVQLLCDQYGNVAALHS 300 (2304)
Q Consensus 226 a--~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~-g~reieVqvl~D~~G~vi~l~~ 300 (2304)
. ..+|||+|+||..|.| |.|+.++.+.++|... +.+++|||||+ +++++.|-++++ .++.. .
T Consensus 156 ~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~---------~~~~lvQefI~~~G~dirv~VvG~---~v~~~-~ 222 (346)
T 2q7d_A 156 LEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI---------QPPCVVQNFINHNAVLYKVFVVGE---SYTVV-Q 222 (346)
T ss_dssp HHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-----------CCEEEEECCCCTTEEEEEEEETT---EEEEE-E
T ss_pred HHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc---------CCCEEEEEeeCCCCeEEEEEEECC---EEEEE-E
Confidence 2 3589999999998654 6699999999988752 36899999997 357888888864 34432 2
Q ss_pred ccccc----c--------cccceEEE-e-----CC------CCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccC
Q 000086 301 RDCSV----Q--------RRHQKIIE-E-----GP------ITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2304)
Q Consensus 301 RdcSv----q--------rr~qKiie-e-----aP------a~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~ 356 (2304)
|...- - .+.+|+.. . .| ...+++ .+++++.|.++.+++|...++ ||++.+..+
T Consensus 223 r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~~~g-vDii~~~~~ 299 (346)
T 2q7d_A 223 RPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVSLFG-IDIIINNQT 299 (346)
T ss_dssp EECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCCEEE-EEEEECTTT
T ss_pred EecCCCcCcCccccccccccceeeccCCccccccccccccccccCCC--hHHHHHHHHHHHHHhCCceEe-eEEEeecCC
Confidence 21100 0 00001100 0 01 011222 578999999999999999775 999998435
Q ss_pred CcEEEEEeccCCC
Q 000086 357 GEYYFLELNPRLQ 369 (2304)
Q Consensus 357 g~~yfLEINpRlq 369 (2304)
|++|+||+|+=++
T Consensus 300 g~~~VlEVN~~PG 312 (346)
T 2q7d_A 300 GQHAVIDINAFPG 312 (346)
T ss_dssp CCEEEEEEEESCC
T ss_pred CCEEEEEEeCCcc
Confidence 7899999999554
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=168.58 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=92.0
Q ss_pred cCeEEEEEEEe------eCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCC
Q 000086 613 EGSKYRIDMVR------RGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHD 686 (2304)
Q Consensus 613 ~g~~y~v~v~~------~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~d 686 (2304)
+|++|.+++.. .|...|.+.+||+.++|.+.....+... . . .......+
T Consensus 594 ~Gk~~~i~l~~i~~~~~~g~~~~~vevnG~~~~v~v~~~~~~~~~---------~------------~----~~~a~~~~ 648 (718)
T 3bg3_A 594 RGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEM---------H------------F----HPKALKDV 648 (718)
T ss_dssp TSCEEEEEEEEEEEECTTSEEEEEEESSSSEEEEEEECGGGTCC------------------------------CCCCCS
T ss_pred cCceeEEEecccCCcccCCcEEEEEEECCEEEEEEEeccCccccc---------c------------c----cccCCCCC
Confidence 47888877542 2334688888888888887643322100 0 0 00123345
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
+..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 7889999999999999999999999999999999999999999999999988 99999999999999763
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-12 Score=157.92 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCC-cEEEee--cCCCCCcC---
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKA--SWGGGGKG--- 245 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKP--s~GgGGkG--- 245 (2304)
+++.+|++++++|||+|+|.. +.+.+|+.++++++|| |+|||| ..||.|||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~k 60 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFV-----------------------ADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEET
T ss_pred CHHHHHHHHHHCCcCCCCeEE-----------------------ECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccc
Confidence 578899999999999999876 7899999999999999 899999 46666666
Q ss_pred ------eEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC-C-CEEEee-cccccc
Q 000086 246 ------IRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SRDCSV 305 (2304)
Q Consensus 246 ------Ir~V~s~eEL~~a~~~~~~e~--------~~---~~i~VEeyI~g~reieVqvl~D~~-G-~vi~l~-~RdcSv 305 (2304)
|++++|++|+.++++++.... ++ ..++||+|++.++|+.+.++.|.. | .++.++ ...+.+
T Consensus 61 s~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~i 140 (395)
T 2fp4_B 61 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDI 140 (395)
T ss_dssp TSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCH
T ss_pred cCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccc
Confidence 999999999999999886543 22 469999999988999999999985 3 455554 334544
Q ss_pred cc----ccceEEEeC--CCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEE---------EEEccCCcEEEEEeccCCC
Q 000086 306 QR----RHQKIIEEG--PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY---------LYSMETGEYYFLELNPRLQ 369 (2304)
Q Consensus 306 qr----r~qKiieea--Pa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEf---------l~d~~~g~~yfLEINpRlq 369 (2304)
.. ...+++... |...+++ ..|.++++.+|+.+...-.+ ++. +..++++||||++-
T Consensus 141 E~va~~~~d~i~~~~idp~~~l~~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~--~~d~~~lEINPl~~ 210 (395)
T 2fp4_B 141 EEVAASNPELIFKEQIDIIEGIKD-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFL--KIDATQVEVNPFGE 210 (395)
T ss_dssp HHHHHHCGGGCEEEECCTTTCCCH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred eeccccCCceEEEEecCCCCCCCH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhh--hCCeEEEEeeeEEE
Confidence 32 245666554 4444554 45677778888865432111 122 23699999999974
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-12 Score=123.22 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=66.5
Q ss_pred CCCeeeeCCCceeEEE-------EccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 686 DPSKLVAETPCKLLRY-------LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~-------~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
++..|+||++|+|.++ +|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 3 ~~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 3 SGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CSEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cCeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 4567999999999997 9999999999999999999999999999999999988 99999999999999874
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-12 Score=124.02 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=63.2
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
++.+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+ .|.+|++|++|+..+
T Consensus 16 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 16 TMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp TCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred CCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 46799999999999999999999999999999999999999999988 99999 899999999998643
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=118.34 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=66.1
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|+||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|..+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 37899999999999999999999999999999999999999999999988 9999999999999998764
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=125.24 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=63.3
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCcc-CCCCEEEEEecCCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAM-QAGELIARLDLDDP 759 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v-~~G~~La~l~~~~~ 759 (2304)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+.| .+|++|++|+..+.
T Consensus 19 ~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 19 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp CSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTTS
T ss_pred CccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCCC
Confidence 4699999999999999999999999999999999999999999988 9999999 99999999987543
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=124.45 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=63.9
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
+..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+.
T Consensus 15 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~ 83 (93)
T 1k8m_A 15 GIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEAL 83 (93)
T ss_dssp TSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred CCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 35799999999999999999999999999999999999999999988 999999999999999987544
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=152.46 Aligned_cols=165 Identities=17% Similarity=0.226 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCc-EEEeecCCCCCc----Ce
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GI 246 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GI 246 (2304)
+++.+|++++++|||+|+|.. +++.+|+.++++++||| +||||..+.||+ ||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV 60 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYA-----------------------CTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCE
T ss_pred CHHHHHHHHHHCCcCCCCeeE-----------------------ECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCE
Confidence 689999999999999999876 78999999999999999 999999875554 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------C---CCcEEEEEeccccceeeEEEEEcCC-C-CEEEee-cc--ccc-ccccc
Q 000086 247 RKVHNDDEVRALFKQVQGEV--------P---GSPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SR--DCS-VQRRH 309 (2304)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~---~~~i~VEeyI~g~reieVqvl~D~~-G-~vi~l~-~R--dcS-vqrr~ 309 (2304)
++++|++++.++++++.... . ...++||+|++.++|+.|.++.|.. | .++.+. .. ++. +++++
T Consensus 61 ~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~ 140 (388)
T 2nu8_B 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEET 140 (388)
T ss_dssp EEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccC
Confidence 99999999999999886531 1 2479999999988999999999986 3 455443 11 333 23322
Q ss_pred -ceEEE--eCCCCCCCHHHHHHHHHHHHHHHHHCCceeee---------EE-EEEEEccCCcEEEEEeccCCC
Q 000086 310 -QKIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAA---------TV-EYLYSMETGEYYFLELNPRLQ 369 (2304)
Q Consensus 310 -qKiie--eaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~---------tV-Efl~d~~~g~~yfLEINpRlq 369 (2304)
.++.. ..|...+++.. +.++++.+|+.+.. .+ +++.+ . .++++||||++.
T Consensus 141 pd~i~~~~i~P~~gl~~~~-------a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~--~-d~~~lEINPl~~ 203 (388)
T 2nu8_B 141 PHLIHKVALDPLTGPMPYQ-------GRELAFKLGLEGKLVQQFTKIFMGLATIFLE--R-DLALIEINPLVI 203 (388)
T ss_dssp GGGEEEEECBTTTBCCHHH-------HHHHHHHTTCCTHHHHHHHHHHHHHHHHHHH--T-TEEEEEEEEEEE
T ss_pred CceEEEEecCCCCCCCHHH-------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh--C-CEEEEEecceEE
Confidence 56665 45766676654 34444455665421 00 11222 3 699999999874
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=119.82 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=63.1
Q ss_pred eeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 691 ~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
.++++|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 11 ~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 11 ESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 367899999999999999999999999999999999999999999988 999999999999999875
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-11 Score=114.18 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=67.5
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+...|.||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 6 ~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 6 AGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999874
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-11 Score=120.76 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCc
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSA 761 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~ 761 (2304)
.+...|+||++|+|.+|+|++||.|++||+|++||+|||.++|+||.+|+|..+ +++|+.|.+|++|++|...+...
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~~~ 89 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDK 89 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCSCC
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCccc
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999998766543
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7.2e-11 Score=112.98 Aligned_cols=69 Identities=30% Similarity=0.437 Sum_probs=66.1
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
...|+||++|+|.+|+|++||.|++||+|+++|+|||..+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 5 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999999988 99999999999999874
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-11 Score=164.94 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=84.0
Q ss_pred CCeEEEEEEEEec----CC--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCC
Q 000086 634 NESEIEAEIHTLR----DG--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGS 707 (2304)
Q Consensus 634 ng~~~~V~v~~l~----dg--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd 707 (2304)
.|+.+.+.+...+ +| .+.+.+||+.+.|.+.+...... ...........++..|.|||||+|++|.|++||
T Consensus 1039 ~gk~~~~~~~~~~~~~~~g~~~~~~evnG~~~~v~v~~~~~~~~---~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd 1115 (1165)
T 2qf7_A 1039 KGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAHGAT---GAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQ 1115 (1165)
T ss_dssp TTEEEEEEEEEECCCCTTSEEEEEEEETTEEEEEEEECGGGTCC---SCCCSCBCCTTCTTEEECSSCEEEEEECCSSCC
T ss_pred CCccceeEecccCCCccCCceEEEEEECCEEEEEEecCcccccc---cccccccCCCCCCceeeCCCCeEEEEEEcCCcC
Confidence 4566656554332 22 36677888888887765432110 000111122345688999999999999999999
Q ss_pred EEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 708 HIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 708 ~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|++|++|++|+
T Consensus 1116 ~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1116 AVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred EeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 9999999999999999999999999999988 99999999999999875
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-11 Score=125.27 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|..+ +++|+ .|..|++|++|+..+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 579999999999999999999999999999999999999999988 99998 899999999998654
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-11 Score=123.79 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=62.7
Q ss_pred CCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 693 PmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+ .|..|++|++|+..+
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 4689999999999999999999999999999999999999999988 99999 899999999998654
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-11 Score=116.25 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=62.6
Q ss_pred eeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 691 ~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+|++|+|.+|+|++||+|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 568999999999999999999999999999999999999999999988 99999999999999985
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-11 Score=124.29 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=33.8
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
.+.+...|+||++|+|.+|.|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 21 ~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 21 QSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 34556789999999999999999999999999999999999999999999999988 99999999999999874
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-10 Score=147.58 Aligned_cols=165 Identities=14% Similarity=0.051 Sum_probs=121.3
Q ss_pred CCCChHHHhhccc---------CCCC--CcccccccC-CCceecccCCC---CeEEEEEE------EECCeEEEEEEEec
Q 000086 1895 NSCDPRAAICGFL---------DNNG--KWIGGIFDK-DSFVETLEGWA---RTVVTGRA------RLGGIPVGIVAVET 1953 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~---------d~~~--~~~~gl~D~-gsF~E~~~~~a---~~vVtG~a------rl~G~pVGViA~e~ 1953 (2304)
.+||--++++... .+.+ +...-|||+ |||.|+....+ .++|+|++ +++|++|.|+|+|.
T Consensus 51 y~yd~~~~~~~a~~~~w~~~~~~~~~~l~~~elllD~~gsf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~ 130 (793)
T 2x24_A 51 YVYDFPEMFRQALFKMWPSPDKYPKDILTYTELVLDPQGQLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDI 130 (793)
T ss_dssp CGGGHHHHHHHHHHHHSCSSSCCCTTSEEEEEEEECTTSCEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECS
T ss_pred cccccHHHHHHHHHHhhhhcccCCCCchhHHHHhcCCCCCEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECC
Confidence 4577777775211 1122 345679999 99999987653 58999998 56999999999987
Q ss_pred ceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhh-------------
Q 000086 1954 QTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF------------- 2020 (2304)
Q Consensus 1954 ~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~------------- 2020 (2304)
++. ||++++..++|..|++++|.++++|+|+|+|+.|...|..++.
T Consensus 131 t~~---------------------gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARig~~ee~~sl~qma~~d~~~ 189 (793)
T 2x24_A 131 TFR---------------------IGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPED 189 (793)
T ss_dssp SGG---------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCHHHHTTCEEEESSSSC
T ss_pred ccc---------------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCccchhhhhhhhcccccCccC
Confidence 655 8999999999999999999999999999999999887754432
Q ss_pred --hhH------------------------------------------------HHHHHHHHHHHHc--CCCCEEEEEcCC
Q 000086 2021 --EGI------------------------------------------------LQAGSTIVENLRT--YKQPVFVYIPMM 2048 (2304)
Q Consensus 2021 --~gi------------------------------------------------lk~ga~iv~al~~--~~vP~i~~I~~~ 2048 (2304)
.|. ++....|..+.+. ..+|+|++|+ +
T Consensus 190 p~~G~~~~yl~~~~~~~~sa~~~v~~~~~~~~ge~~~~i~~i~g~~~~i~v~~l~~SG~iag~~s~a~~~iP~IsvV~-G 268 (793)
T 2x24_A 190 PHKGIKYLYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIGKEEGLGVENLRGSGMIAGETSQDYDEIVTISMVS-C 268 (793)
T ss_dssp STTCEEEEEECHHHHHHTTTSCSEEEEEEEETTEEEEEEEEECCSSSSSSTHHHHHHHHHHHHHHHHHHHSCEEEEEC-S
T ss_pred cccchheeccchhHHHhhhccccccccccccccccceeeeccccccchHHHHHHHhccchhhccccccCCCCEEEEEe-c
Confidence 111 1111122222222 3599999999 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
.+.+||||.+.-+ |+ +++.++|.+++.||+.+-
T Consensus 269 ~~~GGgAy~~~lg----D~--vI~~~~a~i~ltGp~vi~ 301 (793)
T 2x24_A 269 RALGIGAYLVRLG----QR--VIQVENSHIILTGATALN 301 (793)
T ss_dssp EEETHHHHHHHHT----CC--EEEETTCEEESSCHHHHH
T ss_pred CCchHHHHHHhhC----Ce--EEEeccccEEecCHHHHH
Confidence 4555577766543 66 888899999999997764
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-11 Score=120.38 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=66.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
.+++|..|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 47788889999999999999999999999999999999999999999888 99999999999999998754
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.8e-11 Score=163.71 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=65.3
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
..|.|||||+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+.|+.|++|++|
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 479999999999999999999999999999999999999999999999999 9999999999999987
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-11 Score=116.86 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=64.3
Q ss_pred eeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 690 l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
+-++++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4468999999999999999999999999999999999999999999988 9999999999999999764
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=112.47 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=61.8
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
+|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 99999999999999999999999999999999999999999988 99999999999999998654
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-11 Score=120.14 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=61.7
Q ss_pred eCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 692 APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
+..+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 45799999999999999999999999999999999999999999988 999999999999998864
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=109.70 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
+ +|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 6 999999999999999999999999999999999999999988 99999999999999998654
|
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-10 Score=133.88 Aligned_cols=212 Identities=13% Similarity=0.095 Sum_probs=129.4
Q ss_pred CCEEEeCCCcCCCCCchH---HHHHHCCCeEECCCHHHHHHhcCHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCc
Q 000086 132 VDAVWPGWGHASEIPELP---DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2304)
Q Consensus 132 vDaV~pG~G~~SEn~~la---~~l~~~GI~fiGPs~eam~~lgDK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~ 208 (2304)
+|..++=|+ ..-.+- +.++..+. |+-++..+...++||..+.++++++|||+|++.. +..+.+. |.
T Consensus 58 ~d~lisf~s---~gfpl~kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~----~~rd~~~---~~ 126 (330)
T 3t7a_A 58 CDCLISFHS---KGFPLDKAVAYAKLRNP-FVINDLNMQYLIQDRREVYSILQAEGILLPRYAI----LNRDPNN---PK 126 (330)
T ss_dssp CSEEEECCC---TTCCHHHHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEE----ECCBTTB---GG
T ss_pred CCEEEEecc---CCCcHHHHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEE----EeCCCCC---cc
Confidence 677775442 222232 33444564 4459999999999999999999999999999865 1101100 00
Q ss_pred ccccccccCCHHHHHH-HhhccCCcEEEeecCCC---------------CCcCeEEECCHHHHHHHHHHHHhhCCCCcEE
Q 000086 209 DVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGG---------------GGKGIRKVHNDDEVRALFKQVQGEVPGSPIF 272 (2304)
Q Consensus 209 ~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~Gg---------------GGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~ 272 (2304)
++ ..+. .++..+ ..+.+|+|+|+||..|. +++-++++.|.+.....-..+ .....++
T Consensus 127 ~~---~~~e-~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v---r~~~~~i 199 (330)
T 3t7a_A 127 EC---NLIE-GEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV---RKTGSYI 199 (330)
T ss_dssp GS---SEEE-CSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC---CSSSCEE
T ss_pred cc---ceec-cchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh---ccCCcEE
Confidence 00 0011 111122 24568999999999995 223456666543320000011 1246899
Q ss_pred EEEecc-ccceeeEEEEEcCCCCEEEeeccccc----cccccceEEEe-CCCCCCCHHHHHHHHHHHHHHHHHCCceeee
Q 000086 273 IMKVAS-QSRHLEVQLLCDQYGNVAALHSRDCS----VQRRHQKIIEE-GPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2304)
Q Consensus 273 VEeyI~-g~reieVqvl~D~~G~vi~l~~RdcS----vqrr~qKiiee-aPa~~l~~e~~~~m~e~A~rlakalGy~Ga~ 346 (2304)
+|||++ .++.+-|-++++ ++++-..|... --|++-.--+. .|.. +++ +.++.|.++++++|. +.+
T Consensus 200 ~QEFI~~~G~DIRv~vVG~---~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~-Lt~----eek~iA~kaa~a~G~-~v~ 270 (330)
T 3t7a_A 200 YEEFMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEVRYPVI-LNA----REKLIAWKVCLAFKQ-TVC 270 (330)
T ss_dssp EEECCCCSSEEEEEEEEST---TCEEEEEEECTTSSCBCCBCTTSCBCCEECC-CCH----HHHHHHHHHHHHTTB-SEE
T ss_pred EEeccCCCCceEEEEEECC---EEEEEEEEeCCCCCCcEEEcCCCCceeeeec-CCH----HHHHHHHHHHHHhCC-ceE
Confidence 999996 468888888875 55555455321 11221110111 1332 444 668899999999997 577
Q ss_pred EEEEEEEccCCcEEEEEeccCCCCCc
Q 000086 347 TVEYLYSMETGEYYFLELNPRLQVEH 372 (2304)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2304)
.||++.+ ++++|++|+|.+..+-.
T Consensus 271 GVDlLrs--~~~~~V~EVNg~~fvk~ 294 (330)
T 3t7a_A 271 GFDLLRA--NGQSYVCDVNGFSFVKN 294 (330)
T ss_dssp EEEEEEE--TTEEEEEEEEESCCCSS
T ss_pred EEEEEEE--CCccEEEEeCCCccccC
Confidence 7999998 67899999999988753
|
| >1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-09 Score=114.11 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=67.5
Q ss_pred CeeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000086 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2304)
+...+|++|.|+.+.+ ++||.|++||++++||+|||+++|.||.+|+|..+ +..|+.|+ .|+ .|++|++.+
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 3478899999999988 99999999999999999999999999999999888 67899999 898 999999887
Q ss_pred CCc
Q 000086 759 PSA 761 (2304)
Q Consensus 759 ~~~ 761 (2304)
++.
T Consensus 117 ~~~ 119 (136)
T 1zko_A 117 EGE 119 (136)
T ss_dssp GGG
T ss_pred HHH
Confidence 643
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-09 Score=136.25 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=0.0
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++.
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 15 HEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp -------------------------------------------------------------------
T ss_pred ccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 369999999999999999999999999999999999999999988 999999999999999986553
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.7e-08 Score=121.59 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCc----CeE
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGK----GIR 247 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGk----GIr 247 (2304)
+-+.+|++++++|||+|+|.. +++.+|+.++++++||||||||....||| ||+
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~ 60 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKV-----------------------AYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVK 60 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEE
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEE
Confidence 456789999999999999876 78999999999999999999999865555 999
Q ss_pred EECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCC
Q 000086 248 KVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYG 293 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reieVqvl~D~~G 293 (2304)
+++|++|+.++++++.... ....++||+|++.++|+.+.++.|...
T Consensus 61 l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~~~ 110 (397)
T 3ufx_B 61 LADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRAK 110 (397)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEEEEEEETTT
T ss_pred EeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEEEEEecCCC
Confidence 9999999999999987532 135899999999789999999999764
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-07 Score=120.07 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=103.4
Q ss_pred CCceecccC---CCCeEEEEEEEE------CCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000086 1921 DSFVETLEG---WARTVVTGRARL------GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1991 (2304)
Q Consensus 1921 gsF~E~~~~---~a~~vVtG~arl------~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~ 1991 (2304)
|...|.... -..++|+|.+++ +|++|.|+++|++++ ||++++..++|+.|
T Consensus 73 ~~L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~---------------------gGS~G~~~~eKi~R 131 (758)
T 3k8x_A 73 GELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK---------------------IGSFGPQEDEFFNK 131 (758)
T ss_dssp SCEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG---------------------GGCBCHHHHHHHHH
T ss_pred CCeehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccc---------------------cccCcHHHHHHHHH
Confidence 344454433 356899999999 999999999988766 89999999999999
Q ss_pred HHHHhhccCCCEEEEecCCCCCCchhhhh-------------------------hhHHH---------------------
Q 000086 1992 ALMDFNREELPLFILANWRGFSGGQRDLF-------------------------EGILQ--------------------- 2025 (2304)
Q Consensus 1992 ~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~-------------------------~gilk--------------------- 2025 (2304)
+++.|.+.++|+|+|+|++|...+..++. .++.+
T Consensus 132 a~e~A~~~~lPvI~l~dSGGARmqe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~~~vi~~~~~~~ge~ 211 (758)
T 3k8x_A 132 VTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEE 211 (758)
T ss_dssp HHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTEE
T ss_pred HHHHHHHcCCCEEEEecCCCcCccccchhccccccccccccchhcccceeccCHHHHHHhhhccccccceeeeeccCCce
Confidence 99999999999999999999666543320 01111
Q ss_pred --------------------HHHHHHHHHHc--CCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCc
Q 000086 2026 --------------------AGSTIVENLRT--YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2026 --------------------~ga~iv~al~~--~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
....|..+++. ..+|+|++|+ |.+++||||++.- .|+ +++-+++.+++.+|
T Consensus 212 r~~I~~I~G~~~~~gv~~l~~sG~iag~~s~a~~~IPqIsvV~-G~c~GGgAY~paL----~D~--vImv~~s~ifltGP 284 (758)
T 3k8x_A 212 RFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVT-CRSVGIGAYLVRL----GQR--AIQVEGQPIILTGA 284 (758)
T ss_dssp EEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEC-SCEETHHHHHHHH----TCE--EEEETTCCEESSCH
T ss_pred eeeEeeeeccccchhhhhccccchhhhhhhhhhcCCCEEEEEc-cCCchHHHHHHhh----CCE--EEEECCceEEEeCH
Confidence 11112222222 3589999999 5677778886544 366 88889999999999
Q ss_pred cchhhh
Q 000086 2084 EGMIEI 2089 (2304)
Q Consensus 2084 eg~v~i 2089 (2304)
..+-..
T Consensus 285 ~vIk~~ 290 (758)
T 3k8x_A 285 PAINKM 290 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766433
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.8e-08 Score=100.70 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=66.3
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEccccce-----------------------------eeecCCCcEEEEe-
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCM-----------------------------PLLSPASGVLQFK- 738 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~-----------------------------~l~ap~~G~V~~i- 738 (2304)
.|.||++|+|.++.|++||.|++||+|++|+..+++. .|+||.+|+|..+
T Consensus 3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 5889999999999999999999999999999987765 8999999999888
Q ss_pred eCCCCccCCC-CEEEEEecCCCC
Q 000086 739 MAEGQAMQAG-ELIARLDLDDPS 760 (2304)
Q Consensus 739 ~~~G~~v~~G-~~La~l~~~~~~ 760 (2304)
+++|+.|.+| ++|++|...+.-
T Consensus 83 ~~~G~~v~~g~~~l~~i~~~~~~ 105 (116)
T 2k32_A 83 VNIGDYVSASTTELVRVTNLNPI 105 (116)
T ss_dssp CCTTCEECTTTSCCEEEECSCTH
T ss_pred CCCCCEEcCCCcEEEEEECCCeE
Confidence 9999999999 999999876653
|
| >1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-07 Score=99.03 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=63.2
Q ss_pred eeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000086 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2304)
....|++|.|+.+.+ ++|++|++||++++||+|||+++|.||.+|+|..+ ....+.|+ .|+ -|++|++.++
T Consensus 29 d~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (131)
T 1hpc_A 29 DHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSP 108 (131)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSG
T ss_pred hhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECCH
Confidence 467899999999988 99999999999999999999999999999999988 33556775 455 8999998876
Q ss_pred Cc
Q 000086 760 SA 761 (2304)
Q Consensus 760 ~~ 761 (2304)
+.
T Consensus 109 ~~ 110 (131)
T 1hpc_A 109 DE 110 (131)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.5e-07 Score=95.55 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=63.9
Q ss_pred eeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000086 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2304)
....|+.|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.|+ .|+ -|++|++.++
T Consensus 30 d~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 109 (128)
T 3a7l_A 30 EHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDE 109 (128)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred hHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCH
Confidence 356799999999987 99999999999999999999999999999999988 35667777 676 8999998876
Q ss_pred Cc
Q 000086 760 SA 761 (2304)
Q Consensus 760 ~~ 761 (2304)
+.
T Consensus 110 ~~ 111 (128)
T 3a7l_A 110 SE 111 (128)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5.6e-07 Score=95.53 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred eeeeCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe----eCCCCcc---CCCC-EEEEEecCCC
Q 000086 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAM---QAGE-LIARLDLDDP 759 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i----~~~G~~v---~~G~-~La~l~~~~~ 759 (2304)
....|++|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.| ..|+ -|++|++.++
T Consensus 29 ~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (128)
T 1onl_A 29 DYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM 108 (128)
T ss_dssp HHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred hHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCH
Confidence 456799999999887 99999999999999999999999999999999988 3466677 5576 8999998876
Q ss_pred Cc
Q 000086 760 SA 761 (2304)
Q Consensus 760 ~~ 761 (2304)
+.
T Consensus 109 ~~ 110 (128)
T 1onl_A 109 GD 110 (128)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.35 E-value=7.3e-05 Score=88.97 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=62.5
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEccc---------------------------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK--------------------------------------------- 722 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMK--------------------------------------------- 722 (2304)
..|.||.+|+|.++.|++||.|++||+|++|+.-.
T Consensus 23 ~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~ 102 (277)
T 2f1m_A 23 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 102 (277)
T ss_dssp EEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHH
T ss_pred EEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 46899999999999999999999999999998621
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCCC
Q 000086 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDDP 759 (2304)
Q Consensus 723 --------------------------m~~~l~ap~~G~V~~i-~~~G~~v~~G--~~La~l~~~~~ 759 (2304)
-...|+||.+|+|..+ +.+|+.|.+| ++|++|...+.
T Consensus 103 a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 103 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCCc
Confidence 1247999999999988 9999999999 68999875443
|
| >3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00024 Score=89.74 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCeeeeCCCceeEEEEc-cCCCEEccCCcEEEEEc---------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEV--------------------------------------------- 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V-~~Gd~V~~G~~l~~iEa--------------------------------------------- 720 (2304)
...|.++.+|+|.++.| ++||.|++||+|++|+.
T Consensus 121 ~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~ 200 (413)
T 3ne5_B 121 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 200 (413)
T ss_dssp EEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35699999999999999 99999999999999994
Q ss_pred ---cccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 721 ---MKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 721 ---MKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..-...|+||.+|+|..+ +.+|+.|.+|++|++|...
T Consensus 201 ~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 201 TQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp HTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred hccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 112457999999999999 9999999999999998743
|
| >3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00023 Score=87.77 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=63.8
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc-------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm------------------------------------------- 723 (2304)
...|.||.+|+|.+++|++||.|++||+|+.|+.-..
T Consensus 57 ~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~ 136 (359)
T 3lnn_A 57 LVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQS 136 (359)
T ss_dssp EEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHH
T ss_pred EEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4579999999999999999999999999999986422
Q ss_pred ---------------------------------ceeeecCCCcEEEEe-eCCCCccCC-CCEEEEEecCC
Q 000086 724 ---------------------------------CMPLLSPASGVLQFK-MAEGQAMQA-GELIARLDLDD 758 (2304)
Q Consensus 724 ---------------------------------~~~l~ap~~G~V~~i-~~~G~~v~~-G~~La~l~~~~ 758 (2304)
...|+||.+|+|..+ +.+|+.|.+ |++|++|...+
T Consensus 137 ~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~ 206 (359)
T 3lnn_A 137 DYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLS 206 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCC
Confidence 257999999999998 999999999 99999987544
|
| >3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0003 Score=74.19 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=54.0
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eC---CCCccC---CCC-EEEEEecCCCC
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MA---EGQAMQ---AGE-LIARLDLDDPS 760 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~---~G~~v~---~G~-~La~l~~~~~~ 760 (2304)
..+.|.|+-+.. ++|++|++||++++||+|||..+|.||.+|+|..+ .. .-+.|+ -|+ =|++|++.+++
T Consensus 28 q~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~ 105 (125)
T 3klr_A 28 QEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPS 105 (125)
T ss_dssp HHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGG
T ss_pred HhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHH
Confidence 456788988877 79999999999999999999999999999999888 22 233333 243 47777776653
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0012 Score=76.27 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=71.9
Q ss_pred CCccCHHHHHHHHHHHHHhhcc-CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhh
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE-ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAW 2056 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~-~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~ 2056 (2304)
+|.+.+..+..+.+.+..+... .-||++..|+|| |..-.+-.|.+++...+.|+++++. +-.+-||+|
T Consensus 45 ~G~I~~~~a~~i~~~L~~l~~~~~k~I~l~INSPG----------Gsv~a~~~I~~~i~~~~~pV~t~v~-g~AAS~g~~ 113 (215)
T 2f6i_A 45 TDEINKKTADELISQLLYLDNINHNDIKIYINSPG----------GSINEGLAILDIFNYIKSDIQTISF-GLVASMASV 113 (215)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE-EEECHHHHH
T ss_pred ccEECHHHHHHHHHHHHHHHhCCCCcEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEe-eEhHhHHHH
Confidence 6788888888888888766543 389999999999 3445677888999999999999998 233444666
Q ss_pred hhcccccCCccceeecccCcEEEeeCccch
Q 000086 2057 VVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2057 vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+++.... .. .+|.|++++++..|.+.
T Consensus 114 Ia~agd~--g~--i~a~p~s~i~ih~p~~~ 139 (215)
T 2f6i_A 114 ILASGKK--GK--RKSLPNCRIMIHQPLGN 139 (215)
T ss_dssp HHHTSCT--TC--EEECTTCEEESSCTTCS
T ss_pred HHHcCCc--cc--EEEcCCCEEEEeccccc
Confidence 6666532 22 68999999999998764
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=86.63 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=62.0
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc-------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm------------------------------------------- 723 (2304)
...|.+|.+|+|.++.|++||+|++||+|+.|+.-..
T Consensus 31 ~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~ 110 (341)
T 3fpp_A 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQA 110 (341)
T ss_dssp EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSS
T ss_pred EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999999999999999986311
Q ss_pred ------------------------------------------ceeeecCCCcEEEEe-eCCCCccCCCCE---EEEEecC
Q 000086 724 ------------------------------------------CMPLLSPASGVLQFK-MAEGQAMQAGEL---IARLDLD 757 (2304)
Q Consensus 724 ------------------------------------------~~~l~ap~~G~V~~i-~~~G~~v~~G~~---La~l~~~ 757 (2304)
...|+||.+|+|..+ +.+|+.|.+|+. |++|...
T Consensus 111 ~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 111 VSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 190 (341)
T ss_dssp STTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence 145999999999988 999999999987 8887644
Q ss_pred C
Q 000086 758 D 758 (2304)
Q Consensus 758 ~ 758 (2304)
+
T Consensus 191 ~ 191 (341)
T 3fpp_A 191 S 191 (341)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0025 Score=73.67 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=72.9
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+....+.+..+... .-+|++..|+|| |....|-.|.+++...+.|+++++. +-.+.||+
T Consensus 51 ~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPG----------G~v~ag~~I~~~i~~~~~pV~t~v~-G~AaS~G~ 119 (218)
T 1y7o_A 51 TGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG----------GSVSAGLAIVDTMNFIKADVQTIVM-GMAASMGT 119 (218)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE-EEEETHHH
T ss_pred eCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEc-cEeHHHHH
Confidence 5788888999999888877654 579999999999 3445677889999999999999997 33455577
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++....+ . .+|.|+|++++-.|.+.
T Consensus 120 ~Ia~a~d~g--~--r~a~p~a~igih~p~~g 146 (218)
T 1y7o_A 120 VIASSGAKG--K--RFMLPNAEYMIHQPMGG 146 (218)
T ss_dssp HHHTTSCTT--C--EEECTTCEEECCCCC--
T ss_pred HHHHcCCcC--c--EEEcCCcEEEEeccccc
Confidence 777776432 2 68899999999999754
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0024 Score=74.40 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCccCHHHHHHHHHHHHHhhccCC-CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcC-CCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNREEL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM-MAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~-~ge~~G-G 2054 (2304)
.|.+.+..+....+.++.+...+. +|++-.|+|| |.+..+..+.+++...++|++++|.| +|-+.| |
T Consensus 16 ~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~inspG----------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG 85 (230)
T 3viv_A 16 KGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAG 85 (230)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSC----------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHH
T ss_pred eCEECHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC----------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHH
Confidence 478999999999999988876554 5666689998 34456678899999999999999943 455544 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCcc
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2084 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Pe 2084 (2304)
+|+++.+ |. .+|.|++++|..+|-
T Consensus 86 ~~ia~a~----d~--~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 86 TYIALGS----HL--IAMAPGTSIGACRPI 109 (230)
T ss_dssp HHHHHTS----SE--EEECTTCEEECCCEE
T ss_pred HHHHHhc----Cc--eeECCCCEEEeccce
Confidence 7777764 55 899999999988886
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0045 Score=70.78 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+.+..+....+.+..+... .-|+++..|+|| |..-.|-.|.+.+...+.|+.+++. |.+.+ |
T Consensus 33 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~~~~~I~~~i~~~~~~V~t~~~--G~AaSag 100 (203)
T 3qwd_A 33 GSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG----------GSVTAGFAIYDTIQHIKPDVQTICI--GMAASMG 100 (203)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC----------CCHHHHHHHHHHHHHhcCCcEEEEe--eeehhHH
Confidence 7899999999998888887654 578999999999 3445677889999999999999998 44444 7
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+++.... .. .||.|+|++++-.|-+.
T Consensus 101 ~~i~~ag~~--g~--r~~~p~a~imiHqP~~~ 128 (203)
T 3qwd_A 101 SFLLAAGAK--GK--RFALPNAEVMIHQPLGG 128 (203)
T ss_dssp HHHHHTSCT--TC--EEECTTCEEECCCCSSS
T ss_pred HHHHHcCCc--Ce--EEEcCCceEEEeccccc
Confidence 777766532 13 78999999999988764
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0049 Score=70.75 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=71.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+....+.+..+.. ..-+|++..|+|| |-.-.+-.|.+++...+.|+++++. +-.+.||+
T Consensus 33 ~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~-g~AaS~g~ 101 (208)
T 2cby_A 33 GSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG----------GSISAGMAIYDTMVLAPCDIATYAM-GMAASMGE 101 (208)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHCSSCEEEEEE-EEEETHHH
T ss_pred cCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEC-cEeHHHHH
Confidence 688899999999999987765 3579999999999 3334567788999999999999997 23445567
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++.... -..||.|++++++..|.+.
T Consensus 102 ~Ia~agd~----~~~~a~p~a~igih~p~~~ 128 (208)
T 2cby_A 102 FLLAAGTK----GKRYALPHARILMHQPLGG 128 (208)
T ss_dssp HHHHTSCT----TCEEECTTCEEECCCC---
T ss_pred HHHhCCCc----CCEEEcCCcEEEEeccccc
Confidence 77776532 1268999999999999753
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0051 Score=77.54 Aligned_cols=112 Identities=10% Similarity=0.011 Sum_probs=79.4
Q ss_pred HHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecC--CCCC--cCeEE
Q 000086 174 IGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASW--GGGG--KGIRK 248 (2304)
Q Consensus 174 ~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~--GgGG--kGIr~ 248 (2304)
+..|.++.++++...|-.. ......+ ...++.+|+.+.++++| |||++|+.. |+-| -||++
T Consensus 9 y~~K~ll~~~~~~~~~~~~-------~~~~~~~-------~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l 74 (425)
T 3mwd_A 9 QTGKELLYKFICTTSAIQN-------RFKYARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGV 74 (425)
T ss_dssp HHHHHHHHHHCCCSSCBCS-------TTCCEEE-------CTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEE
T ss_pred HHHHHHHHHhccccCCccC-------CcceEEe-------CCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEE
Confidence 5678999999993222000 0000011 11468899999999999 999999976 3322 38999
Q ss_pred ECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEee
Q 000086 249 VHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAALH 299 (2304)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--------~~~i~VEeyI~g--~reieVqvl~D~~G~vi~l~ 299 (2304)
+.+++|+.+++.++..... -..++||++++. ++|+-+.+..|..|.++.++
T Consensus 75 ~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 75 NLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (425)
T ss_dssp EECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEE
Confidence 9999999999988764321 135899999964 48999999999887776553
|
| >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00032 Score=87.09 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=62.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcccc-------------------------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm------------------------------------------- 723 (2304)
...|.+|.+|+|.+++|++||.|++||+|++|+.-..
T Consensus 43 ~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~ 122 (369)
T 1vf7_A 43 IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYL 122 (369)
T ss_dssp EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 3468999999999999999999999999999975211
Q ss_pred --------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCC
Q 000086 724 --------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDD 758 (2304)
Q Consensus 724 --------------~~~l~ap~~G~V~~i-~~~G~~v~~G--~~La~l~~~~ 758 (2304)
...|+||++|+|..+ +.+|+.|.+| ++|++|...+
T Consensus 123 ~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 123 QSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred HHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence 258999999999888 9999999995 8999987544
|
| >3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.001 Score=71.44 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=41.3
Q ss_pred CCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 693 ETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 693 PmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
...|.|+-+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 51 ~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev 97 (143)
T 3mxu_A 51 EQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI 97 (143)
T ss_dssp HHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred hhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 34677877766 78999999999999999999999999999999888
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0049 Score=69.94 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+....+.+..+.. ..-++++..|+|| |..-.+-.|.+++...+.|+.+++. +-.+.||+
T Consensus 32 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~-g~AaS~g~ 100 (193)
T 1yg6_A 32 TGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG----------GVITAGMSIYDTMQFIKPDVSTICM-GQAASMGA 100 (193)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE-EEEETHHH
T ss_pred cCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEe-eeHHHHHH
Confidence 578889999999988887654 3579999999999 3445677788999999999999997 33444567
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++.... . ..+|.|++++++..|.+.
T Consensus 101 ~Ia~ag~~--~--~r~a~p~s~i~ih~p~~~ 127 (193)
T 1yg6_A 101 FLLTAGAK--G--KRFCLPNSRVMIHQPLGG 127 (193)
T ss_dssp HHHHTSCT--T--CEEECTTCEEEECCCEEE
T ss_pred HHHHCCCc--C--cEEEecCcEEEEEecccc
Confidence 77766532 1 269999999999999754
|
| >3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00081 Score=71.89 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=42.6
Q ss_pred eCCCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 692 APmPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
....|.|+-+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 45 q~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev 92 (137)
T 3tzu_A 45 VEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV 92 (137)
T ss_dssp HHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE
T ss_pred HhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe
Confidence 455788888766 79999999999999999999999999999999887
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0074 Score=71.87 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+.+..+..+.+.+..... ..-+|++..|+|| |..-.|-.|.+++...+.|+.+++. +-.+-||+
T Consensus 88 ~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~t~v~-G~AASaG~ 156 (277)
T 1tg6_A 88 MGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCV-GQAASMGS 156 (277)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSCSCEEEEEE-EEEETHHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc-cEeHHHHH
Confidence 578888899888877776433 4689999999999 4445677889999999999999998 23344567
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++....+ ..||.|++++++..|.+.
T Consensus 157 ~Ia~Agd~g----kr~a~P~S~ImihqP~~g 183 (277)
T 1tg6_A 157 LLLAAGTPG----MRHSLPNSRIMIHQPSGG 183 (277)
T ss_dssp HHHHTSCTT----CEEECTTCEEEECCCCCC
T ss_pred HHHHCCCcC----CEEEecCCEEEEeccccc
Confidence 776665321 269999999999999764
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0086 Score=68.37 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-h
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2054 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G-G 2054 (2304)
+|.+.+..+....+.+..+... .-|+++..|+|| |-.-.+-.|.+.+...+.|+.+++. |.+.+ |
T Consensus 36 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~~~~I~~~i~~~~~~v~t~~~--G~AaS~g 103 (201)
T 3p2l_A 36 NGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG----------GMVTAGMGVYDTMQFIKPDVSTICI--GLAASMG 103 (201)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHhCCCeEEEEc--CEehhHH
Confidence 6788999898888888776553 579999999999 3445677889999999999999999 44444 6
Q ss_pred hhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+|+++.... .. .|+.|+|++++-.|.+.
T Consensus 104 ~~i~~ag~~--g~--r~~~p~a~imiH~p~~~ 131 (201)
T 3p2l_A 104 SLLLAGGAK--GK--RYSLPSSQIMIHQPLGG 131 (201)
T ss_dssp HHHHHTSST--TC--EEECTTCEEEECCCEEE
T ss_pred HHHHHcCcc--CC--EEEcCCCeEEEeccccc
Confidence 676666532 12 68899999999999764
|
| >4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00036 Score=86.31 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
....|.+|.+|+|.+++|++||.|++||+|++|+.-
T Consensus 31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 356799999999999999999999999999999863
|
| >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0032 Score=77.93 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=61.4
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCC
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~~ 759 (2304)
.-++||..| +++..++.|+.|++||+|+.|+.| +++.+|+||.+|+|..+ .....|.+|+.|+.|....+
T Consensus 268 ~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~-~~~~~V~~Gd~l~~ia~~~~ 341 (354)
T 3cdx_A 268 AYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG-AGPGRVTRGDAVAVVMEDYN 341 (354)
T ss_dssp GEEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE-ECSSEECTTCEEEEEEEECC
T ss_pred EEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE-eCCCccCCCCEEEEEeeecC
Confidence 457899999 788889999999999999999996 89999999999998655 46778999999999976643
|
| >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.001 Score=72.69 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEE-------------------------
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQF------------------------- 737 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~------------------------- 737 (2304)
|..|.||+.|+|+.+. +..|.|-+ |+-++...+ +..++||.+|+|..
T Consensus 7 ~~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGid 82 (154)
T 2gpr_A 7 NLKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLD 82 (154)
T ss_dssp CEEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSS
T ss_pred CCEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcc
Confidence 4679999999999984 88888888 899998887 47999999999986
Q ss_pred ----------e-eCCCCccCCCCEEEEEec
Q 000086 738 ----------K-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 738 ----------i-~~~G~~v~~G~~La~l~~ 756 (2304)
+ +++||.|.+||+|+++.+
T Consensus 83 Tv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 83 TVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp GGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred hhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 3 889999999999999975
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.01 Score=80.07 Aligned_cols=113 Identities=9% Similarity=-0.016 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccC-CcEEEeecCCCCCc----CeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr 247 (2304)
-+..|.++.++++|..+-.. . .. ...+ ..-++.+|+.+.++++| ||||+|+-.-.||| ||+
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~-----~-~~-~~~v-------~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVk 73 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQN-----R-FK-YARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVG 73 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCS-----T-TC-CEEE-------CTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCE
T ss_pred HHHHHHHHHHhCcccccccc-----C-Cc-eEEe-------CCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEE
Confidence 35688999999998322110 0 00 0011 11467899999999998 99999996644443 789
Q ss_pred EECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEee
Q 000086 248 KVHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAALH 299 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~--------~~~i~VEeyI~g--~reieVqvl~D~~G~vi~l~ 299 (2304)
++.|++|+.+++.++..... -..++||++++. ++|+-+.+..|..|.++.+.
T Consensus 74 L~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 74 VNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp EEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEE
Confidence 99999999999988764321 135899999964 48999999999887776553
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0082 Score=74.44 Aligned_cols=153 Identities=20% Similarity=0.257 Sum_probs=88.1
Q ss_pred cCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-------cc--eeeEEEEEcCCCCEEEee
Q 000086 229 VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-------SR--HLEVQLLCDQYGNVAALH 299 (2304)
Q Consensus 229 IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g-------~r--eieVqvl~D~~G~vi~l~ 299 (2304)
-+.+.|+||..|+.|+||+++++.+++.+.++.. ...++||+||+. ++ ++.+-++....-. +.++
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~-----~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~-vy~y 219 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ-----GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYN-IYLY 219 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHHH-----TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCC-EEEC
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc-----CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCE-EEEE
Confidence 4689999999999999999999999998876542 357999999974 33 4445455433111 1111
Q ss_pred ----cccc-------------------ccccccceEE---EeCC---------------CCCCCHHHHHHHHHHHHHHHH
Q 000086 300 ----SRDC-------------------SVQRRHQKII---EEGP---------------ITVAPLETVKKLEQAARRLAK 338 (2304)
Q Consensus 300 ----~Rdc-------------------Svqrr~qKii---eeaP---------------a~~l~~e~~~~m~e~A~rlak 338 (2304)
.|-| ++|..+..-. +.+- .......+..+|.+++.....
T Consensus 220 ~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~ 299 (380)
T 3tig_A 220 REGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLS 299 (380)
T ss_dssp SCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHH
T ss_pred cCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 1111 2232211000 0000 001123456777777666555
Q ss_pred HC---------Cc--eeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcC
Q 000086 339 CV---------NY--VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2304)
Q Consensus 339 al---------Gy--~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G 393 (2304)
++ .+ -....+||++| ++.++++||+|..++-...++ -+|.+..++++..
T Consensus 300 a~~~~i~~~~~~~~~FEl~G~D~lid-~~l~~wllEVN~~P~~~q~~i-----~~l~~~~~~iavd 359 (380)
T 3tig_A 300 CLEPAISTKYLPYHSFQLFGFDFMVD-KNLKVWLIEVNGAPACAQKLY-----AELCKGIVDLAIS 359 (380)
T ss_dssp HHHHHHCCTTSSSEECEEEEEEEEEB-TTCCEEEEEEESSCCCCTTTH-----HHHHHHHHHHTTT
T ss_pred HHHHHhhhcccCCceEEEEeEEEEEc-CCCcEEEEEEeCCCCccHHhH-----HHHHHHHHHHhcc
Confidence 41 23 26778999999 578999999999988654322 2367777777765
|
| >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=70.95 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=60.3
Q ss_pred cCCCCCeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEEe--------------------
Q 000086 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK-------------------- 738 (2304)
Q Consensus 683 ~~~dp~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~i-------------------- 738 (2304)
++.++..|.||+.|+|+.+ .+..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 8 ~p~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH 83 (162)
T 1ax3_A 8 NEIGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIH 83 (162)
T ss_dssp CTTCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEE
T ss_pred CCCCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEE
Confidence 3445667999999999997 788888888 899998887 778999999999754
Q ss_pred ----------------eCCCCccCCCCEEEEEecC
Q 000086 739 ----------------MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 739 ----------------~~~G~~v~~G~~La~l~~~ 757 (2304)
+++||.|.+||+|+++.++
T Consensus 84 IGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 84 FGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp CSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHH
T ss_pred ECccchhcCCCccEEEEeCCCEEcCCCEEEEECHH
Confidence 6689999999999999754
|
| >3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0069 Score=65.79 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 694 TPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 694 mPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.-|.|+-+.. ++|++|++|+++++||++|...+|.||.+|+|..+
T Consensus 57 ~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev 102 (155)
T 3hgb_A 57 ALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV 102 (155)
T ss_dssp HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 3567776655 78999999999999999999999999999999887
|
| >3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.013 Score=71.93 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=59.5
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCC
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM----Km~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~~~ 758 (2304)
+..-|+||..| ++...|+.||.|++||+|++|..+ +...+|+||.+|+|... ...-.|.+|+.|+.|...+
T Consensus 256 ~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~-~~~~~V~~G~~l~~Ia~~~ 330 (331)
T 3na6_A 256 GDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR-HFPGMIKSGDCAAVIGVVE 330 (331)
T ss_dssp SCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE-ECSSEECTTCEEEEEECBC
T ss_pred CcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE-eCCCccCCCCEEEEEeccC
Confidence 34568999999 667789999999999999999986 56789999999998665 2346788999999987543
|
| >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=68.75 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=56.7
Q ss_pred CeeeeCCCceeEEEEccCCCEEcc----CCcEEEEEccccceeeecCCCcEEEEe-------------------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK------------------------- 738 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~----G~~l~~iEaMKm~~~l~ap~~G~V~~i------------------------- 738 (2304)
..|.||+.|+|+.+. +..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT 88 (161)
T 1f3z_A 13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 88 (161)
T ss_dssp EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence 469999999999976 78888887 888988887 378999999999755
Q ss_pred -----------eCCCCccCCCCEEEEEecC
Q 000086 739 -----------MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 739 -----------~~~G~~v~~G~~La~l~~~ 757 (2304)
+++||.|.+||+|+++.++
T Consensus 89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 89 VELKGEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEECHH
T ss_pred hhcCCCccEEEEeCcCEECCCCEEEEECHH
Confidence 6789999999999999753
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.036 Score=63.33 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.||.+.+..+.....-+...+.+ .-||.+..|+||-+-....+.-|-.-.|-.|.+.+...+.|+.+++. |-+.+
T Consensus 33 l~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~~V~t~~~--G~AaS~ 110 (205)
T 4gm2_A 33 LSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCL--GKAYGI 110 (205)
T ss_dssp ECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred ECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCEEEEEE--eeehhH
Confidence 47889998888877666655544 57999999999933211122225667788999999999999999999 65555
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccchh
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2087 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v 2087 (2304)
|+.+++....+ . .++.|+|++-+-.|.+.+
T Consensus 111 as~il~aG~~g--k--R~~lP~a~iMIHqP~~~~ 140 (205)
T 4gm2_A 111 ACILASSGKKG--Y--RFSLKNSSFCLNQSYSII 140 (205)
T ss_dssp HHHHHTTSCTT--C--EEECTTCEEEECCCCCCC
T ss_pred HHHHHhcCCCC--C--EEecCCCEEEEecCcccc
Confidence 55555554322 2 688899999988887653
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.021 Score=76.36 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=67.2
Q ss_pred cCeEEEEEEEe-eCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeec---------------ccceEEE--E
Q 000086 613 EGSKYRIDMVR-RGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE---------------AAGTRLL--I 674 (2304)
Q Consensus 613 ~g~~y~v~v~~-~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee---------------~~~~~v~--v 674 (2304)
+|..+.+.... .+...+.+.+||..+.+.+... ++.+.+.++|.++.+..... .....+. .
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~ 619 (681)
T 3n6r_A 541 DGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKI-SGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPM 619 (681)
T ss_dssp TSCEEEEEECCCTTCSEEEEEETTEEEEEEEEEE-TTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCS
T ss_pred CCcEEEEEEEecCCCeEEEEEECCEEEEEEEEEe-CCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCC
Confidence 44555444221 1333477888888888877655 46788888888887765421 0111111 1
Q ss_pred eCce-----------------eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 675 DGRT-----------------CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 675 ~g~t-----------------~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
.|+- +.++...-...|+||..|+|.+++|++||.|+.||+|++||
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 1111 11112222356999999999999999999999999999986
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.042 Score=63.96 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=35.5
Q ss_pred ceEEEEE---cCcccchhhhhhcccCEEEEecCcceEecChH
Q 000086 1780 TFTLTYV---TGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818 (2304)
Q Consensus 1780 iptis~v---tg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~ 1818 (2304)
.|+|++| .|.+.|+|++++.-||+++|.+++.++..+|.
T Consensus 68 ~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 68 IPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 109 (230)
T ss_dssp SCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEE
T ss_pred CCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccce
Confidence 6999999 99999999999999999999999988866654
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.23 Score=65.39 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhhcc-CC-CEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhc
Q 000086 1982 FPDSATKTAQALMDFNRE-EL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV 2059 (2304)
Q Consensus 1982 ~p~sa~K~a~~i~~~~~~-~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~ 2059 (2304)
....+..+.++++.+... ++ -||+-.|++|.+. .... .....+..+.....|++++|- +-.+.||.|+++
T Consensus 320 ~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~---~~~~----~i~~~i~~l~~~~kPVia~v~-g~AasgG~~iA~ 391 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV---TASE----VIRAELAAARAAGKPVVVSMG-GMAASGGYWIST 391 (593)
T ss_dssp TSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECH---HHHH----HHHHHHHHHHHTTCCEEEEEE-EEEETHHHHTTT
T ss_pred chhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCH---HHHH----HHHHHHHHHHhCCCCEEEEEC-CChHHHHHHHHH
Confidence 455677888888888664 43 4666678887332 2111 234566778888999999997 345556777776
Q ss_pred ccccCCccceeecccCcEEEeeCc
Q 000086 2060 DSRINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2060 ~~~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
.+ |. ++|.|++.+|..++
T Consensus 392 aa----D~--iva~p~a~~Gsigv 409 (593)
T 3bf0_A 392 PA----NY--IVANPSTLTGSIGI 409 (593)
T ss_dssp TC----SE--EEECTTCEEECCCE
T ss_pred hC----CE--EEECCCCEeeccee
Confidence 64 76 89999999998774
|
| >3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.034 Score=69.17 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc------cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV------MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa------MKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
..-++||..|.+ ...|+.||.|++||+|++|.- -....+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 290 ~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~-~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 290 YRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH-FASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSSCEEE-EECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE-CSSSEECTTCEEEEEEE
T ss_pred cEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE-eCCCccCCCCEEEEEee
Confidence 346899999955 589999999999999999998 346689999999998655 33368999999998864
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=57.66 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCC
Q 000086 712 DTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771 (2304)
Q Consensus 712 G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~ 771 (2304)
|...+.+|.|+....|.||.+|+|..+ +++|+.|++||+|++|+.... ...-..||.|.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~-~~~i~Ap~~G~ 64 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKM-IMTLNVQERGR 64 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTE-EEEEECSSSEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecce-EEEEEcCCCEE
Confidence 455678899999999999999999888 999999999999999986432 11223455554
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=1.1 Score=52.03 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=66.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhh---------hhhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.+.+..+-+|+|.-.+ .|+.|.+- ......+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 103 (233)
T 3r6h_A 26 NVLGPTMQQALNEAIDAADRDNVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACT-- 103 (233)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 57889999999999998877667777775542 26666431 1122344556788899999999999998
Q ss_pred CcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.| |.-+++. .|+ .+|.++++++.
T Consensus 104 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (233)
T 3r6h_A 104 GHAIAMGAFLLCS----GDH--RVAAHAYNVQA 130 (233)
T ss_dssp SEEETHHHHHHTT----SSE--EEECTTCCEEC
T ss_pred CcchHHHHHHHHh----CCE--EEEeCCcEEEC
Confidence 55555 5544544 477 78888888775
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.14 Score=72.06 Aligned_cols=120 Identities=21% Similarity=0.415 Sum_probs=91.3
Q ss_pred CCeEEEEEEEEecC----C--ceEEEeCCeeEEEEeeecccceEEEEeCceeccccCCCCCeeeeCCCceeEEEEccCCC
Q 000086 634 NESEIEAEIHTLRD----G--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGS 707 (2304)
Q Consensus 634 ng~~~~V~v~~l~d----g--~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~dp~~l~APmPGkvv~~~V~~Gd 707 (2304)
.|+.+.+.+...++ | .+.+.+||+.+.+.+.+...... ..........++..|.|||||+|++|+|++||
T Consensus 1022 ~g~~~~i~l~~~~~~~~~g~~~~~~e~nG~~~~v~v~~~~~~~~----~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd 1097 (1150)
T 3hbl_A 1022 KGKRLIIKLETISEPDENGNRTIYYAMNGQARRIYIKDENVHTN----ANVKPKADKSNPSHIGAQMPGSVTEVKVSVGE 1097 (1150)
T ss_dssp TTEEEEEEEEEECCCCTTSEEEEEEEETTEEEEEEEECCCSSSC----CCCCCBCCTTCSSEEECSSSEEEEEECCCTTC
T ss_pred CCcEEEEEecccCCCCCCCceEEEEEECCeEEEEeccccccccc----ccccccCCCCCCceeecCceEEEEEEEeCCCC
Confidence 35555555543321 1 25667777777777665432211 01111234567889999999999999999999
Q ss_pred EEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 708 HIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 708 ~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.|++||+|++||+|||+++|+||.+|+|.++ +++|+.|++|++|++|+.+
T Consensus 1098 ~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1098 TVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp EECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred EECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 9999999999999999999999999999999 9999999999999999865
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.55 Score=55.83 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=55.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec----------ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~A~ellltg~~i~A~e-A~~~ 178 (267)
T 3hp0_A 100 PYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQE-ASEW 178 (267)
T ss_dssp SSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCCBCHHH-HHHH
T ss_pred CCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 3699999999999999999999999999999875543 2222333333221 00111222222 2368
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.+++++++.+..+.+.+.
T Consensus 179 GLV~~vv~~~~~~~~~~a~~la 200 (267)
T 3hp0_A 179 GLIDAFDAESDVLLRKHLLRLR 200 (267)
T ss_dssp TSSSCBCSCTTHHHHHHHHHHT
T ss_pred CCcceecCCHHHHHHHHHHHHH
Confidence 9999999865544444444444
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.084 Score=50.94 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=32.3
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
....|+||..|+|.++.+++|+.|.+|++|+.|+.
T Consensus 42 ~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 42 ASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp SCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred ceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 35689999999999999999999999999999974
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=91.71 E-value=0.054 Score=72.40 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=59.9
Q ss_pred eeeeEeecCeEEEEEEEeeCCCeEEEeeCCeEEEEEEEEecCCceEEEeCCeeEEEEeeecccceEEEEeCceeccccCC
Q 000086 606 SQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDH 685 (2304)
Q Consensus 606 ~~vel~~~g~~y~v~v~~~~~~~y~l~ing~~~~V~v~~l~dg~l~v~~~G~s~~v~~~ee~~~~~v~v~g~t~~~~~~~ 685 (2304)
..+.+.+||+.|.+++...+...... . .........+.+...+.|.-..+.+++. -.+.-+..-+.++...
T Consensus 614 ~~~~vevnG~~~~v~v~~~~~~~~~~-----~-~~~a~~~~~~~v~ap~~G~V~~v~V~~G---d~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 614 RQVFFELNGQLRSILVKDTQAMKEMH-----F-HPKALKDVKGQIGAPMPGKVIDIKVVAG---AKVAKGQPLCVLSAMK 684 (718)
T ss_dssp EEEEEESSSSEEEEEEECGGGTCC-----------CCCCCSSSCEECSSCEEEEEECSCTT---CCBCTTCCCEEEESSS
T ss_pred EEEEEEECCEEEEEEEeccCcccccc-----c-cccCCCCCCceEeCCCCeEEEEEEeCCC---CeeCCCCEEEEEeccc
Confidence 45778889999999987654221110 0 0000001122344445565555444321 1111111112222233
Q ss_pred CCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 686 dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
-...|+||..|+|.++.|++|+.|+.||+|++||
T Consensus 685 me~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 685 METVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred ceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 3467999999999999999999999999999875
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.46 Score=55.57 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhc-cCCC-EEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHc-CCCCEEEEEcCCCcCCchhhhhccc
Q 000086 1985 SATKTAQALMDFNR-EELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRT-YKQPVFVYIPMMAELRGGAWVVVDS 2061 (2304)
Q Consensus 1985 sa~K~a~~i~~~~~-~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~-~~vP~i~~I~~~ge~~GGa~vv~~~ 2061 (2304)
+.....++++.+.. .++- ||+-.|++|..... .......+..+.. +..|++++|- +-.+.||.|+++.
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~-------~~~i~~~l~~~~~~~~kPVia~v~-g~a~~gG~~lA~a- 100 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYE-------SAEIHKKLEEIKKETKKPIYVSMG-SMAASGGYYISTA- 100 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHH-------HHHHHHHHHHHHHHHCCCEEEEEE-EEEETHHHHHHTT-
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHH-------HHHHHHHHHHHHHhCCCeEEEEEC-CeehHhHHHHHHh-
Confidence 45677778877765 3444 45557877733221 1233455666666 7899999997 2344556666665
Q ss_pred ccCCccceeecccCcEEEeeCc
Q 000086 2062 RINSDHIEMYADRTAKGNVLEP 2083 (2304)
Q Consensus 2062 ~i~~d~~~~~A~p~A~~gvl~P 2083 (2304)
+|. +||.|++++|..|.
T Consensus 101 ---~D~--i~a~~~a~~g~~Gv 117 (240)
T 3rst_A 101 ---ADK--IFATPETLTGSLGV 117 (240)
T ss_dssp ---SSE--EEECTTCEEECCCC
T ss_pred ---CCe--eEECCCCeEeccce
Confidence 476 89999999988765
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.1 Score=49.96 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++.+++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 44 TVKIPSPVRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EEECCCCCCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 3579999999999999999999999999999873
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.083 Score=49.75 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=31.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|.|.++.+++|+.|++|++|+.|..
T Consensus 36 ~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 36 EIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred EEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 4579999999999999999999999999999864
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=91.17 E-value=0.13 Score=49.60 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=30.1
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
..|+||..|.|.++.+++|+.|++|++|+.||
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 56999999999999999999999999999985
|
| >2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.35 Score=59.22 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=54.9
Q ss_pred eeeeCCCceeEEEEccCCCEEccCCcEEEEEc----cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000086 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEV----MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 689 ~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa----MKm~~~l~ap~~G~V~~i~~~G~~v~~G~~La~l~~ 756 (2304)
.++||..|.+. ..++.|+.|++||+|+++-- .+...+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 259 ~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~-~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 259 QLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI-RSAMYVQGNEEVAILAR 328 (332)
T ss_dssp EEECSSSEEEE-ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE-ECSEEECTTCEEEEEEE
T ss_pred EEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE-eCCCeeCCCCEEEEEee
Confidence 57899998555 78999999999999999965 678899999999998544 35667899999998864
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=91.02 E-value=6.3 Score=47.01 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=67.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|..-. ..........++..+..+.+|+|+.|-
T Consensus 45 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 123 (277)
T 4di1_A 45 NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVT- 123 (277)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 58889999999999998876 46777777654 3488774311 112234456778889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ ++|.++++++.
T Consensus 124 G~a~GgG~~Lalac----D~--ria~~~a~f~~ 150 (277)
T 4di1_A 124 GYALGAGLTLALAA----DW--RVSGDNVKFGA 150 (277)
T ss_dssp SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred CeEehhHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444455555554 77 88889988876
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.22 Score=59.04 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=59.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~e-A~~ 179 (263)
T 3lke_A 101 PKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEE-ALR 179 (263)
T ss_dssp SSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 3699999999999999999999999999999876543 1223444444322 00111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++|+.+..+.+++|..-+
T Consensus 180 ~GLv~~vv~~~~~l~~~a~~~a~~l 204 (263)
T 3lke_A 180 LGLIQEICENKQELQERVKNYLKAV 204 (263)
T ss_dssp HTSSSEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCcEecCChhHHHHHHHHHHHHH
Confidence 8999999986666666666665443
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.12 Score=61.66 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh-----------HHHHHhhcc-cc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF-----------SALNKLLGR-EV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~-----------~al~~~lG~-~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|. .. .-+...+.+.+ ..
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~e-A~ 185 (275)
T 1dci_A 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE-AL 185 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHH-HH
T ss_pred CCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHH-HH
Confidence 369999999999999999999999999999987654321 123333443 11 00111111111 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.-|++|.++++..+..+.+++|.
T Consensus 186 ~~GLv~~vv~~~~~l~~~a~~~a 208 (275)
T 1dci_A 186 DSGLVSRVFPDKDVMLNAAFALA 208 (275)
T ss_dssp HHTSSSEEESSHHHHHHHHHHHH
T ss_pred HcCCcceecCChHHHHHHHHHHH
Confidence 58999999976244444444443
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.17 Score=49.70 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=34.7
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCC
Q 000086 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771 (2304)
Q Consensus 726 ~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~ 771 (2304)
.|.||.+|+|..+ +++|+.|++||+|+.|+..... ..-..|+.|.
T Consensus 7 ~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~-~~i~Ap~~G~ 52 (84)
T 2kcc_A 7 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMI-MTLNVQERGR 52 (84)
T ss_dssp EECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCE-EEEECSSSEE
T ss_pred eEECCCCEEEEEEECCCCCEECCCCEEEEEEeccee-EEEECCCCEE
Confidence 4999999999888 9999999999999999865432 1222355554
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=90.38 E-value=0.25 Score=46.53 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=35.8
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2304)
..|.||.+|+|..+ +++|+.|++||+|++++..+.. ..-..|+.|..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~-~~i~ap~~G~v 53 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKME-NEIPSPRDGVV 53 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEE-EEEECSSSEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccce-EEEeCCCCEEE
Confidence 46899999999888 9999999999999999875432 11223555544
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.37 E-value=8.6 Score=45.33 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh----------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++.+......++++.+.+ ..+-+|+|.-. +.|+.|.+- ......+.+..++..+..+.+|+|+.|-
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (261)
T 3pea_A 27 NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIH 106 (261)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58889999999999998876 46777777544 447776541 1112223345578889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.+++++|.
T Consensus 107 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 133 (261)
T 3pea_A 107 -GAALGGGLEFAMSC----HM--RFATESAKLGL 133 (261)
T ss_dssp -SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred -CeeehHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444455555553 77 88888888775
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
|---|
Probab=90.33 E-value=0.19 Score=48.47 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=31.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++.+++|+.|..|++|+.|+.
T Consensus 41 ~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3579999999999999999999999999999874
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=90.16 E-value=9.3 Score=45.07 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=65.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchh---------------hhhhhHHHHHHHHHHHHHcCCCCE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR---------------DLFEGILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~---------------~e~~gilk~ga~iv~al~~~~vP~ 2041 (2304)
..++++......++++.+.. .++-+|+|.-..+ |+.|.. .......+....++..+..+.+|+
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (263)
T 3l3s_A 28 HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT 107 (263)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 58899999999999999876 4677887755432 554432 111223445667888999999999
Q ss_pred EEEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2042 FVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+.|- |-+.| |..+++. .|+ ++|.++++++.
T Consensus 108 IAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (263)
T 3l3s_A 108 IALVE--GIATAAGLQLMAA----CDL--AYASPAARFCL 139 (263)
T ss_dssp EEEES--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEEEC--CEEEHHHHHHHHH----CCE--EEecCCCEEeC
Confidence 99998 54555 5555554 366 78888888776
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=90.06 E-value=0.27 Score=46.84 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=36.4
Q ss_pred ceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000086 724 CMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2304)
Q Consensus 724 ~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2304)
...|.||.+|+|.++ +++|+.|.+||+|++|+..+.. ..-..|+.|..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~-~~i~Ap~~G~v 56 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKME-TEINAPTDGKV 56 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEE-EEEECSSSEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcccee-EEEECCCCEEE
Confidence 457899999999888 9999999999999999875421 12234555543
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.27 Score=57.96 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=56.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec--------ChHHHHHhhcccccccccccCccee----ecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT--------GFSALNKLLGREVYSSHMQLGGPKI----MATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt--------G~~al~~~lG~~vy~s~~~lGG~~i----~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+.|-.+ ...-|+
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg~~~l~~~vG~~~A~-~l~ltg~~~~a~eA~~~GL 176 (254)
T 3isa_A 98 PSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQAL-SILGSARAFDADEARRIGF 176 (254)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHHHCHHHHH-HHHTTTCEEEHHHHHHTTS
T ss_pred CCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccHHHHHHHHHcCHHHHH-HHHHhCCCCcHHHHHHCCC
Confidence 3699999999999999999999999999999876543 333444455543200 011222222 236999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
+|.+++++ +..+.+.++..
T Consensus 177 v~~vv~~~-~l~~~a~~~a~ 195 (254)
T 3isa_A 177 VRDCAAQA-QWPALIDAAAE 195 (254)
T ss_dssp SSEECCGG-GHHHHHHHHHH
T ss_pred ccEEeChh-HHHHHHHHHHH
Confidence 99999754 44444444443
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=89.64 E-value=0.19 Score=48.50 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=31.3
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 3679999999999999999999999999999863
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.64 E-value=13 Score=43.48 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=68.5
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh--------hhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD--------LFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~--------e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
-..++++-.....++++.+++ ..+=+|+|.-. +.|+.|..- ......+....++.++..+.+|+|+.|-
T Consensus 21 ~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 99 (254)
T 3hrx_A 21 LNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN- 99 (254)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 358899999999999998876 56777776544 337766431 1123345667788999999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
|...+||.-+++. +|+ .+|.++|+++.-
T Consensus 100 G~a~GgG~~lala----cD~--ria~~~a~f~~p 127 (254)
T 3hrx_A 100 GVAAGAGMSLALW----GDL--RLAAVGASFTTA 127 (254)
T ss_dssp SEEETHHHHHHTT----CSE--EEEETTCEEECC
T ss_pred CEeeehhhhhhhc----cce--eeEcCCCEEEch
Confidence 3444445555554 477 888888888763
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=89.54 E-value=0.33 Score=57.74 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC----------hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG----------FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG----------~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+.+.+.+.+ ...-
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~A~~llltg~~i~A~e-A~~~ 177 (268)
T 3i47_A 99 PKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATR-AYSL 177 (268)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEHHH-HHHT
T ss_pred CCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 36999999999999999999999999999998765431 112333333321 00111111111 2468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.++++ .+..+.++++..
T Consensus 178 GLV~~vv~~-~~l~~~a~~~a~ 198 (268)
T 3i47_A 178 NLVQHCVPD-DTLLEFTLKYAS 198 (268)
T ss_dssp TSCSEEECG-GGHHHHHHHHHH
T ss_pred CCCcEeeCh-hHHHHHHHHHHH
Confidence 999999975 444455555543
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.47 E-value=0.17 Score=49.70 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=33.2
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
.....|+||..|+|.++.+++|+.|..|++|+.|+..
T Consensus 37 k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 37 KASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred ccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 3346799999999999999999999999999999854
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.33 E-value=12 Score=44.82 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh----------------hhhHHHHHHHHHHHHHcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL----------------FEGILQAGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e----------------~~gilk~ga~iv~al~~~~v 2039 (2304)
...++.+......++++.+.. ..+-+|+|.-. +.|+.|.+-. .....+....++..+..+.+
T Consensus 45 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 124 (290)
T 3sll_A 45 MNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQ 124 (290)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 358899999999999999876 46777777554 4477775411 11234456678888999999
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|+|+.|- |...+||..+++. .|+ .+|.++++++.-+
T Consensus 125 PvIAav~-G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 160 (290)
T 3sll_A 125 PVIAAIN-GAAIGGGLCLALA----CDV--RVASQDAYFRAAG 160 (290)
T ss_dssp CEEEEEC-SEEETHHHHHHHH----SSE--EEEETTCEEECTT
T ss_pred CEEEEEC-CeehHHHHHHHHH----CCE--EEEeCCCEEECch
Confidence 9999998 3444445555555 477 8888888887633
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=89.20 E-value=1.7 Score=57.27 Aligned_cols=87 Identities=7% Similarity=0.039 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhcc-C-CCEEEEecCCC-CCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcc
Q 000086 1984 DSATKTAQALMDFNRE-E-LPLFILANWRG-FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD 2060 (2304)
Q Consensus 1984 ~sa~K~a~~i~~~~~~-~-lPLv~l~d~~G-f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~ 2060 (2304)
.++..+.+.++.+... + --|++-.|++| -+... .......+..+...++|+++|+- .-+-||.|+++.
T Consensus 70 ~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~-------~~~I~~~i~~~k~~gkpvva~~~--~aas~~y~lAsa 140 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPS-------MQYIGKALKEFRDSGKPVYAVGE--NYSQGQYYLASF 140 (593)
T ss_dssp EEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHH-------HHHHHHHHHHHHHTTCCEEEEES--CEEHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHH-------HHHHHHHHHHHHhcCCeEEEEEc--cchhHHHHHHHh
Confidence 4678888888887553 3 46888899997 33211 12334555566666799999875 434456666654
Q ss_pred cccCCccceeecccCcEEEeeCccc
Q 000086 2061 SRINSDHIEMYADRTAKGNVLEPEG 2085 (2304)
Q Consensus 2061 ~~i~~d~~~~~A~p~A~~gvl~Peg 2085 (2304)
+|. +|+.|++.+++.+|-+
T Consensus 141 ----ad~--i~~~P~~~vg~~g~~~ 159 (593)
T 3bf0_A 141 ----ANK--IWLSPQGVVDLHGFAT 159 (593)
T ss_dssp ----SSE--EEECTTCCEECCCCBC
T ss_pred ----CCE--EEECCCceEEEecccc
Confidence 365 8999999999999964
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=89.05 E-value=9.7 Score=45.00 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=69.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC--CCCCchhh---------hhhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~--Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
...++++......++++.+.. ..+=+|+|.-.. .|+.|.+- ......+....++..+..+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 109 (265)
T 3kqf_A 30 ANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAI 109 (265)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 358999999999999998876 467777776543 37777531 112234456677888999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
- |...+||..+++.+ |+ .+|.+++++|.-
T Consensus 110 ~-G~a~GgG~~lalac----D~--ria~~~a~f~~p 138 (265)
T 3kqf_A 110 N-GIALGGGTELSLAC----DF--RIAAESASLGLT 138 (265)
T ss_dssp C-SEEETHHHHHHHHS----SE--EEEETTCEEECC
T ss_pred C-CeeehHHHHHHHhC----CE--EEEcCCcEEECc
Confidence 8 34444566556654 77 888888888753
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.93 E-value=20 Score=42.60 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=66.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEec-CCCCCCchhh-h------------hhhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILAN-WRGFSGGQRD-L------------FEGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-~~Gf~~G~~~-e------------~~gilk~ga~iv~al~~~~vP~i 2042 (2304)
..+++++-.....++++.+++ ..+-+|+|.- -+.|+.|.+- + .....+....++..+..+.+|+|
T Consensus 36 ~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 115 (274)
T 4fzw_C 36 LNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVI 115 (274)
T ss_dssp TSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 358899999999999999877 5677777754 3457777421 0 11223345567888999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||.-+++. .|+ .+|.++++++.
T Consensus 116 Aav~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 146 (274)
T 4fzw_C 116 CAVN-GVAAGAGATLALG----GDI--VIAARSAKFVM 146 (274)
T ss_dssp EEEC-SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EEEC-CceeecCceeeec----cce--EEECCCCEEEC
Confidence 9998 3444445555554 477 88888998876
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=88.85 E-value=0.23 Score=49.69 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 47 ~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4679999999999999999999999999999974
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=88.83 E-value=15 Score=43.64 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=66.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
...++++......++++.+.. ..+-+|+|.-. +.|+.|.+-. . ....+....++..+..+.+|+|
T Consensus 38 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 117 (279)
T 3g64_A 38 LNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVI 117 (279)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 358899999999999998876 46777777544 4487775311 0 0122334667888999999999
Q ss_pred EEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |-+.| |..+++. .|+ ++|.++++++.
T Consensus 118 Aav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 148 (279)
T 3g64_A 118 AALH--GVAAGAGAVLALA----ADF--RVADPSTRFAF 148 (279)
T ss_dssp EEEC--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEEc--CeeccccHHHHHh----CCE--EEEeCCCEEeC
Confidence 9998 54555 5555555 377 88888888775
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=5.6 Score=46.52 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=68.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEec-C-CCCCCchhhh-h---------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILAN-W-RGFSGGQRDL-F---------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-~-~Gf~~G~~~e-~---------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++++-.....++++.+.+ ..+-+|+|.- . +.|+.|.+-. . ....+....++..+..+.+|+|+.|
T Consensus 22 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 101 (250)
T 2a7k_A 22 NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAV 101 (250)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58889999999999999876 4678888865 3 3477775321 0 1122334567888999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
- |...+||..+++. .|+ .+|.+++++|.-
T Consensus 102 ~-G~a~GgG~~lala----cD~--ria~~~a~f~~p 130 (250)
T 2a7k_A 102 D-GYAIGMGFQFALM----FDQ--RLMASTANFVMP 130 (250)
T ss_dssp C-SEEETHHHHHHTT----SSE--EEEETTCEEECC
T ss_pred C-CeEeHHHHHHHHh----CCE--EEEcCCCEEeCc
Confidence 8 3444455555655 477 888999998873
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.74 E-value=0.31 Score=57.42 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=55.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|... .-+.+.+.+.+ ...
T Consensus 91 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~e-A~~ 169 (254)
T 3hrx_A 91 EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEE-ALA 169 (254)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHH-HHH
Confidence 3699999999999999999999999999999875443 2234445555422 11111222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 170 ~GLv~~vv~~~-~l~~~a~~~a 190 (254)
T 3hrx_A 170 LGLVHRVVPAE-KLMEEALSLA 190 (254)
T ss_dssp HTSCSEEECGG-GHHHHHHHHH
T ss_pred CCCeEEecCcH-HHHHHHHHHH
Confidence 99999999754 3444444443
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.34 Score=50.09 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.6
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 725 ~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|.|+.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 57899999999999 9999999999999999765
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.64 E-value=6.1 Score=47.30 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=67.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh----------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|.+- ......+....++..+..+.+|+|+.|-
T Consensus 48 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 127 (286)
T 3myb_A 48 NALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVH 127 (286)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 58899999999999999876 46777777543 458877531 1122334556788889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.++++++.
T Consensus 128 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 154 (286)
T 3myb_A 128 -GIATAAGCQLVAMC----DL--AVATRDARFAV 154 (286)
T ss_dssp -SCEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred -CeehHHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444555555554 66 88888888775
|
| >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=88.62 E-value=0.27 Score=53.74 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=33.5
Q ss_pred EEccCCCEEccCCcEEEEEccccc-------eeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMC-------MPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~-------~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
.+|++||+|++||+|+++.--+.. +++.-.- .....+ ...+..|.+|+.|..+
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGGKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSSCCCSCBCCEEECTTCEEEEE
T ss_pred EEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCcceEEEccCceEcCCCEEEEe
Confidence 699999999999999999742222 2221111 111222 3346678889988876
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=88.59 E-value=3.7 Score=48.75 Aligned_cols=95 Identities=21% Similarity=0.183 Sum_probs=67.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-----------hhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-.. ....+....++.++..+.+|+|+.|
T Consensus 35 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (272)
T 3qk8_A 35 NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAI 114 (272)
T ss_dssp HEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47888999999999998876 46777777554 44887753211 1223345567888999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |...+||..+++. +|+ .+|.++|+++.
T Consensus 115 ~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (272)
T 3qk8_A 115 R-GPAVGAGLVVALL----ADI--SVASATAKIID 142 (272)
T ss_dssp C-SEEEHHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C-CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 8 3444445555555 477 88999998876
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=88.43 E-value=0.37 Score=56.98 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=55.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 179 (261)
T 2gtr_A 101 KKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQE-ACG 179 (261)
T ss_dssp CSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999875542 1223444455321 01111222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+.+|.
T Consensus 180 ~GLv~~vv~~~-~l~~~a~~~a 200 (261)
T 2gtr_A 180 KGLVSQVFWPG-TFTQEVMVRI 200 (261)
T ss_dssp TTSCSEEECGG-GHHHHHHHHH
T ss_pred CCCcccccChh-HHHHHHHHHH
Confidence 99999999754 3444444443
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.46 Score=57.06 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=52.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-------Ch---HHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-------GF---SALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-------G~---~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. +. ..|-+.+|... .-+...+.+.+ ...-
T Consensus 119 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~~ 197 (286)
T 3myb_A 119 PAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRNVGRKAAFEMLVTGEFVSADD-AKGL 197 (286)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCHHHHHHHTTTSCHHHHHHHHHHCCCEEHHH-HHHH
T ss_pred CCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCCCchHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 3699999999999999999999999999999765432 11 11222223211 00111111111 3468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.++++ .+..+.+++|.
T Consensus 198 GLv~~vv~~-~~l~~~a~~~a 217 (286)
T 3myb_A 198 GLVNRVVAP-KALDDEIEAMV 217 (286)
T ss_dssp TSCSEEECG-GGHHHHHHHHH
T ss_pred CCCcEecCH-HHHHHHHHHHH
Confidence 999999974 44444444443
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=88.26 E-value=0.34 Score=57.86 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=51.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEe-cCcceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~-~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-+-+.+|... .-+...+.+.+ ..
T Consensus 112 ~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~e-A~ 190 (280)
T 1pjh_A 112 SKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI-MC 190 (280)
T ss_dssp CSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHH-HH
T ss_pred CCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HH
Confidence 36999999999999999999999999999 88765542 2233444555322 11111222222 34
Q ss_pred ccCceEEEecCc
Q 000086 1843 TNGVVHLTVSDD 1854 (2304)
Q Consensus 1843 ~nGv~d~~v~dd 1854 (2304)
..|++|.+++++
T Consensus 191 ~~GLv~~vv~~~ 202 (280)
T 1pjh_A 191 ENGFISKNFNMP 202 (280)
T ss_dssp HTTCCSEECCCC
T ss_pred HCCCcceeeCCc
Confidence 699999999876
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.19 E-value=10 Score=44.83 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhh----hhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD----LFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2052 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~----e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~ 2052 (2304)
...++++......++++.+....+-+|+|.-. +.|+.|.+- ......+....++..+..+.+|+|+.|- |...+
T Consensus 42 ~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G~a~G 120 (264)
T 3he2_A 42 RNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAIN-GPAIG 120 (264)
T ss_dssp TTCBCHHHHHHHHHHHHCC---CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEEC-SCEET
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC-CcEEc
Confidence 35889999999999999887667777777543 347776432 1223445566788899999999999998 34444
Q ss_pred chhhhhcccccCCccceeecccCcEEEe
Q 000086 2053 GGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2053 GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
||..+++. .|+ ++|.++++++.
T Consensus 121 gG~~lala----cD~--ria~~~a~f~~ 142 (264)
T 3he2_A 121 AGLQLAMQ----CDL--RVVAPDAFFQF 142 (264)
T ss_dssp HHHHHHHH----SSE--EEECTTCEEEC
T ss_pred chhHHHHh----CCE--EEEcCCCEEEC
Confidence 45555555 477 88999998876
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=87.94 E-value=0.39 Score=56.92 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=54.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~e-A~~ 180 (265)
T 3swx_A 102 SKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVE-AHR 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHH-HHH
T ss_pred CCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHH-HHH
Confidence 46999999999999999999999999999998765432 222444555322 11111222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~ 200 (265)
T 3swx_A 181 IGIVQEIVPVG-EHVDTAIAI 200 (265)
T ss_dssp TTSCSEEESTT-CHHHHHHHH
T ss_pred cCCCCEecChh-HHHHHHHHH
Confidence 89999999764 334444444
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=87.93 E-value=0.26 Score=48.55 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCeeeeCCCceeEEEEccCCC-EEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd-~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+ .|..||+|+.|+.
T Consensus 48 ~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred cceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 467999999999999999999 8999999999984
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=87.84 E-value=0.26 Score=58.85 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~e-A~~ 184 (275)
T 3hin_A 106 RVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAE-GVV 184 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876553 2233444455321 11112222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.+++++ +..+.+++|..-+
T Consensus 185 ~GLv~~vv~~~-~l~~~a~~~a~~i 208 (275)
T 3hin_A 185 HGFSQYLIENG-SAYDKALELGNRV 208 (275)
T ss_dssp HTSCSEEESSS-CHHHHHHHHHHHH
T ss_pred CCCCCEEeChh-HHHHHHHHHHHHH
Confidence 89999999754 4455555554433
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=87.83 E-value=42 Score=41.30 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=68.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC--CCCCCchhh--hh----------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW--RGFSGGQRD--LF----------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~--~Gf~~G~~~--e~----------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
-.+++++-.....++++.++. ..+-+|+|.-. +.|+.|..- +. .........++..+..+..|+|
T Consensus 30 ~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 109 (353)
T 4hdt_A 30 INSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYV 109 (353)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 358899999999999998877 67888888754 358888541 11 1122344567888999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||..+++. .|+ .+|.++|+++.
T Consensus 110 Aav~-G~a~GgG~~lal~----cD~--ria~~~a~f~~ 140 (353)
T 4hdt_A 110 SIMD-GIVMGGGVGVGAH----GNV--RVVTDTTKMAM 140 (353)
T ss_dssp EEEC-BEEETHHHHHHTT----SSE--EEECTTCEEEC
T ss_pred EEeE-CceeecCccccCC----cCe--eccchhccccC
Confidence 9998 3444445555555 466 78888888876
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=87.74 E-value=0.4 Score=56.79 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCc-ceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~-~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++ .+.+. |..-+-+.+|... .-+...+.+.+ ..
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~ 179 (265)
T 2ppy_A 101 PQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQE-AL 179 (265)
T ss_dssp SSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHH-HH
T ss_pred CCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HH
Confidence 36999999999999999999999999999999 65542 1222444445321 01112222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
..|++|.++++ .+..+.+++|..
T Consensus 180 ~~GLv~~vv~~-~~l~~~a~~~a~ 202 (265)
T 2ppy_A 180 EIGLVNRVFPQ-AETRERTREYAR 202 (265)
T ss_dssp HHTSSSEEECG-GGHHHHHHHHHH
T ss_pred HCCCcceecCH-HHHHHHHHHHHH
Confidence 69999999975 344445555543
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=87.68 E-value=0.38 Score=57.44 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=56.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 109 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~e-A~~ 187 (275)
T 4eml_A 109 PKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQE-AER 187 (275)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999876653 2233444444321 00111222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+++|..
T Consensus 188 ~GLv~~vv~~~-~l~~~a~~~a~ 209 (275)
T 4eml_A 188 MGMVNTVVPVD-RLEEEGIQWAK 209 (275)
T ss_dssp HTSCSEEECGG-GHHHHHHHHHH
T ss_pred cCCccEeeCHH-HHHHHHHHHHH
Confidence 89999999754 44555555543
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.54 E-value=0.34 Score=57.51 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=56.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e-A~~ 180 (265)
T 3kqf_A 102 PQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQE-AKE 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876543 2233444444321 00111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+++|..-
T Consensus 181 ~GLv~~vv~~-~~l~~~a~~~a~~ 203 (265)
T 3kqf_A 181 YGLVEFVVPV-HLLEEKAIEIAEK 203 (265)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHH
T ss_pred CCCccEEeCH-HHHHHHHHHHHHH
Confidence 8999999974 4555555555443
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=87.51 E-value=3.5 Score=48.45 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhhh---------hhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDLF---------EGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e~---------~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
...++++-.....++++.++...+-+|+|.-. +.|+.|.+-.. .........++..+..+.+|+|+.|-
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 106 (254)
T 3isa_A 28 RNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH- 106 (254)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 35889999999999999887767778888654 34777743110 11122345678889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++. .|+ .+|.++++++.
T Consensus 107 G~a~GgG~~lala----cD~--ria~~~a~f~~ 133 (254)
T 3isa_A 107 GRNFGAGVDLFAA----CKW--RYCTPEAGFRM 133 (254)
T ss_dssp SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred CeEeecchhHHHh----CCE--EEEcCCCEEEC
Confidence 3344445555555 477 88888888876
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=87.49 E-value=0.41 Score=56.76 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh-----------HHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF-----------SALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~-----------~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+... .-+-+.+|... .-+...+.+.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 180 (265)
T 3qxi_A 102 AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAER-AHA 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 579999999999999999999999999999987554321 22333333321 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++ +..+.+++|.
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~a 201 (265)
T 3qxi_A 181 LGMVNVLAEPG-AALDAAIALA 201 (265)
T ss_dssp TTSCSEEECTT-CHHHHHHHHH
T ss_pred CCCccEeeChh-HHHHHHHHHH
Confidence 89999999754 4444444443
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=87.46 E-value=0.51 Score=56.41 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccccccccccCccee----ecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy~s~~~lGG~~i----~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+-|-.+ ...
T Consensus 121 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~-~l~ltg~~~~A~eA~~ 199 (280)
T 2f6q_A 121 PKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT-EMLIFGKKLTAGEACA 199 (280)
T ss_dssp CSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH-HHHTTCCCEEHHHHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHH-HHHHcCCCCCHHHHHH
Confidence 3699999999999999999999999999999875543 122344455542200 011122222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.+++++ +..+.+++|..-
T Consensus 200 ~GLv~~vv~~~-~l~~~a~~~a~~ 222 (280)
T 2f6q_A 200 QGLVTEVFPDS-TFQKEVWTRLKA 222 (280)
T ss_dssp TTSCSEEECTT-THHHHHHHHHHH
T ss_pred CCCcceEECHH-HHHHHHHHHHHH
Confidence 99999999754 444555555443
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.36 E-value=0.081 Score=53.05 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
...|+||..|+|.++.+++|+.|..|++|+.||
T Consensus 62 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 62 QNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------------------------------
T ss_pred cEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 467999999999999999999999999999886
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.26 E-value=0.68 Score=55.18 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=57.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccccc----ccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy----~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|.... -+...+.+.+ ...
T Consensus 111 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~e-A~~ 189 (274)
T 4fzw_C 111 PKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQ-AHE 189 (274)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHH-HHH
Confidence 3699999999999999999999999999999875542 22334555554320 0111121111 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+++|..-+
T Consensus 190 ~GLv~~vv~~-~~l~~~a~~~a~~l 213 (274)
T 4fzw_C 190 WGMIWQVVDD-ETLADTAQQLARHL 213 (274)
T ss_dssp TTSSSEEECG-GGHHHHHHHHHHHH
T ss_pred CCCceEEeCh-HHHHHHHHHHHHHH
Confidence 9999999974 44555555554433
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=87.17 E-value=0.41 Score=58.72 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChH--------HHHHhhcccccccccccCccee----ecccCc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS--------ALNKLLGREVYSSHMQLGGPKI----MATNGV 1846 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~--------al~~~lG~~vy~s~~~lGG~~i----~~~nGv 1846 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.-.+ .+-+.+|..... ..=|-|-.+ ...-|+
T Consensus 157 ~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g~l~~~vG~~~A~-ellltG~~i~A~eA~~~GL 235 (333)
T 3njd_A 157 DKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRAK-RLLFTGDCITGAQAAEWGL 235 (333)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTCCHHHHHCHHHHH-HHHTTCCEEEHHHHHHTTS
T ss_pred CCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHCCC
Confidence 4799999999999999999999999999999876654322 122223321100 001112222 246899
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000086 1847 VHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1847 ~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
++.++++ .+..+.+++|..
T Consensus 236 V~~vv~~-~~l~~~a~~lA~ 254 (333)
T 3njd_A 236 AVEAPDP-ADLDARTERLVE 254 (333)
T ss_dssp SSBCCCG-GGHHHHHHHHHH
T ss_pred ccEecCh-HHHHHHHHHHHH
Confidence 9999965 444455555543
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.08 E-value=20 Score=42.91 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=66.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh----------hhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|.+- ......+....++..+..+.+|+|+.|-
T Consensus 55 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 134 (287)
T 2vx2_A 55 NTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVN 134 (287)
T ss_dssp TCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58899999999999998876 46777777654 235555421 1112233456678889999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|-+.| |..+++. +|+ .+|.++++++.-+
T Consensus 135 --G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 163 (287)
T 2vx2_A 135 --GLATAAGCQLVAS----CDI--AVASDKSSFATPG 163 (287)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTCEEECCG
T ss_pred --CEEEcHHHHHHHh----CCE--EEEcCCCEEECch
Confidence 54455 5555554 477 8888999887633
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=87.03 E-value=0.47 Score=56.18 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-------cC---hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------TG---FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-------tG---~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ .+ ..-+-+.+|... .-+...+.+.+ ...-
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~e-A~~~ 182 (263)
T 3l3s_A 104 PKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDADW-ALAA 182 (263)
T ss_dssp SSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHHHHHHHHHHCCEEEHHH-HHHH
T ss_pred CCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 469999999999999999999999999999976543 31 122333334321 00111111111 2468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000086 1845 GVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
|++|.++++ .+..+.+++|..
T Consensus 183 GLv~~vv~~-~~l~~~a~~~a~ 203 (263)
T 3l3s_A 183 GLINRILPE-AALATHVADLAG 203 (263)
T ss_dssp TSSSEECCH-HHHHHHHHHHHH
T ss_pred CCccEEeCH-HHHHHHHHHHHH
Confidence 999999964 445555555543
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=86.84 E-value=0.69 Score=54.55 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=55.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 93 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 171 (256)
T 3trr_A 93 RKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAED-AAK 171 (256)
T ss_dssp SSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHH-HGG
T ss_pred CCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 46999999999999999999999999999997654321 223444444322 00111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.+++++ +..+.+++|..
T Consensus 172 ~GLv~~vv~~~-~l~~~a~~~a~ 193 (256)
T 3trr_A 172 YGFINRLVDDG-QALDTALELAA 193 (256)
T ss_dssp GTCCSEEECTT-CHHHHHHHHHH
T ss_pred CCCeeEecChH-HHHHHHHHHHH
Confidence 89999999754 34444444443
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=86.84 E-value=0.6 Score=56.52 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=55.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh-----------HHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF-----------SALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~-----------~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-|-+.+|... .-+...+.+.+ ...
T Consensus 140 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 218 (305)
T 3m6n_A 140 RAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQ-LLG 218 (305)
T ss_dssp TCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHH-HHH
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHH-HHH
Confidence 469999999999999999999999999999987554321 12222233211 00011111111 235
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+.+|..-+
T Consensus 219 ~GLv~~vv~~-~~l~~~a~~~a~~l 242 (305)
T 3m6n_A 219 MGLVDRVVPR-GQGVAAVEQVIRES 242 (305)
T ss_dssp HTSCSEEECT-TCHHHHHHHHHHHH
T ss_pred CCCCCEecCh-hHHHHHHHHHHHHH
Confidence 7999999975 44555555555444
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=86.71 E-value=5.2 Score=46.34 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-CCCCchhh--------hhhhHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD--------LFEGILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-Gf~~G~~~--------e~~gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
..++++......++++.+... .-+|+|.-.+ .|+.|.+- ......+....++.++..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d-~~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 103 (232)
T 3ot6_A 27 NAISPDVIIAFNAALDQAEKD-RAIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACP--G 103 (232)
T ss_dssp TCBCHHHHHHHHHHHHHHHHT-TCEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECC--E
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CCEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC--C
Confidence 578899999999999888764 3466664432 37766431 1122344556788899999999999988 4
Q ss_pred cCCc-hhhhhcccccCCccceeecccC-cEEEe
Q 000086 2050 ELRG-GAWVVVDSRINSDHIEMYADRT-AKGNV 2080 (2304)
Q Consensus 2050 e~~G-Ga~vv~~~~i~~d~~~~~A~p~-A~~gv 2080 (2304)
-+.| |.-+++. .|+ .+|.++ ++++.
T Consensus 104 ~a~GgG~~lala----cD~--ria~~~~a~f~~ 130 (232)
T 3ot6_A 104 HAVAKGAFLLLS----ADY--RIGVAGPFSIGL 130 (232)
T ss_dssp EEETHHHHHHTT----SSE--EEEECSSCCEEC
T ss_pred EeehHHHHHHHH----CCE--EEEeCCCcEEEC
Confidence 4445 5555554 466 788886 67775
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=86.71 E-value=7 Score=46.25 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=66.0
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-h---------hhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L---------FEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e---------~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|.+- + .....+....++.++..+.+|+|+.|-
T Consensus 46 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 125 (263)
T 2j5g_A 46 LVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVN 125 (263)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 36788888999999988876 467777776432 36655431 1 112233345778889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.||..+++.+ |+ .+|.++++++.
T Consensus 126 --G~a~GG~~Lalac----D~--ria~~~a~f~~ 151 (263)
T 2j5g_A 126 --GAALLHSEYILTT----DI--ILASENTVFQD 151 (263)
T ss_dssp --SEECSCGGGGGGC----SE--EEEETTCEECC
T ss_pred --CcchHHHHHHHhC----CE--EEEcCCCEEec
Confidence 5555776666654 77 88999998876
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=86.70 E-value=10 Score=45.26 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=65.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhhh-h------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
...++++......++++.+.+ ..+ +|+|.-.+ .|+.|.+-. . ....+....++.++..+.+|+|
T Consensus 47 ~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 125 (280)
T 2f6q_A 47 KNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLI 125 (280)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 358889999999999998876 567 87776542 366664311 0 0012234567788999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
+.|- |...+||..+++. .|+ .+|.++|+++.-+
T Consensus 126 Aav~-G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 158 (280)
T 2f6q_A 126 AVVN-GPAVGISVTLLGL----FDA--VYASDRATFHTPF 158 (280)
T ss_dssp EEEC-SCEETHHHHGGGG----CSE--EEEETTCEEECCT
T ss_pred EEEC-CeeehHHHHHHHh----CCE--EEECCCcEEECch
Confidence 9998 3444455555555 477 8888888887743
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=86.68 E-value=0.39 Score=57.46 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=56.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~~ 193 (278)
T 3h81_A 115 RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE-AER 193 (278)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 3699999999999999999999999999999875532 2233444444321 11112222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+++|..-
T Consensus 194 ~GLv~~vv~~-~~l~~~a~~~a~~ 216 (278)
T 3h81_A 194 SGLVSRVVPA-DDLLTEARATATT 216 (278)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHH
T ss_pred CCCccEEeCh-hHHHHHHHHHHHH
Confidence 8999999975 4455555555443
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=86.68 E-value=0.71 Score=54.75 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~e-A~~ 176 (265)
T 3qxz_A 98 RTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQR-AVE 176 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHH-HHH
T ss_pred CCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 36999999999999999999999999999998765431 112333333221 00111222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+++|.
T Consensus 177 ~GLv~~vv~~-~~l~~~a~~~a 197 (265)
T 3qxz_A 177 TGLANRCLPA-GKVLGAALRMA 197 (265)
T ss_dssp HTSCSEEECH-HHHHHHHHHHH
T ss_pred CCCccEeeCH-HHHHHHHHHHH
Confidence 8999999974 44444444443
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=86.55 E-value=0.73 Score=54.29 Aligned_cols=84 Identities=21% Similarity=0.156 Sum_probs=54.0
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+.. ..-+-+.+|... .-+...+.+.+ ...-
T Consensus 93 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~e-A~~~ 171 (255)
T 3p5m_A 93 KPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAAT-AFEW 171 (255)
T ss_dssp SCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHH-HHHT
T ss_pred CCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHHC
Confidence 6999999999999999999999999999998765521 122333333221 00111122222 3469
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.+++++ +..+.+++|.
T Consensus 172 GLv~~vv~~~-~l~~~a~~~a 191 (255)
T 3p5m_A 172 GMISHITSAD-EYESVLTDVL 191 (255)
T ss_dssp TSCSEECCTT-CHHHHHHHHH
T ss_pred CCCCEeeCHH-HHHHHHHHHH
Confidence 9999999754 4444444443
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=86.51 E-value=8.2 Score=45.74 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h-----------hhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-----------EGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~-----------~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
...++++......++++.+.. ..+-+|+|.-. +.|+.|.+-. . .........++..+..+.+|+|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 104 (268)
T 3i47_A 25 HNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIA 104 (268)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 358999999999999999876 46777777543 4588775311 1 01123455678889999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||..+++.+ |+ ++|.++++++.
T Consensus 105 av~-G~a~GgG~~lalac----D~--ria~~~a~f~~ 134 (268)
T 3i47_A 105 MVQ-GAAFGGGAGLAAAC----DI--AIASTSARFCF 134 (268)
T ss_dssp EEC-SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred EEC-CEEEhHhHHHHHhC----CE--EEEcCCCEEEC
Confidence 998 34444455555554 77 88888888775
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.43 E-value=0.61 Score=55.14 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=56.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~e-A~~ 176 (261)
T 3pea_A 98 SKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAE-ALK 176 (261)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999875542 1223444444321 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.++++ .+..+.+++|..-
T Consensus 177 ~GLv~~vv~~-~~l~~~a~~~a~~ 199 (261)
T 3pea_A 177 WGLVNGVFAE-ETFLDDTLKVAKQ 199 (261)
T ss_dssp HTSSSEEECG-GGHHHHHHHHHHH
T ss_pred CCCccEecCH-HHHHHHHHHHHHH
Confidence 8999999975 4455555555443
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=86.35 E-value=4.7 Score=47.41 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=66.1
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h---------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F---------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~---------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|..-. . .........++..+..+.+|+|+.|-
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 107 (256)
T 3qmj_A 28 NAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVN 107 (256)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58899999999999998876 46777777654 3377775411 1 11123346788899999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++. .|+ ++|.++++++.
T Consensus 108 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 134 (256)
T 3qmj_A 108 -GLGVGIGATILGY----ADL--AFMSSTARLKC 134 (256)
T ss_dssp -SEEETHHHHGGGG----CSE--EEEETTCEEEC
T ss_pred -CeehhHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 3344445555555 476 78888888776
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=86.21 E-value=27 Score=40.73 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=65.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h-h-------hHHH--H-HHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-E-------GILQ--A-GSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~-~-------gilk--~-ga~iv~al~~~~vP~i~~ 2044 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-. . . .... . ...++..+..+.+|+|+.
T Consensus 21 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 100 (253)
T 1uiy_A 21 NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAA 100 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 58889999999999998876 46666766543 4577775311 0 0 0111 1 456678889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||..+++. .|+ .+|.+++++|.
T Consensus 101 v~-G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 129 (253)
T 1uiy_A 101 VN-GPAVAGGAGLALA----CDL--VVMDEEARLGY 129 (253)
T ss_dssp EC-SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EC-CeeeHHHHHHHHh----CCE--EEEcCCcEEeC
Confidence 98 3445556666665 477 88999999887
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=86.14 E-value=0.73 Score=54.60 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=55.3
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~e-A~~ 178 (263)
T 3moy_A 100 RKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEE-AER 178 (263)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHH-HHH
T ss_pred CCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876643 2233444444321 00111122222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.++++ .+..+.+++|.
T Consensus 179 ~GLv~~vv~~-~~l~~~a~~~a 199 (263)
T 3moy_A 179 VGLVSRIVPA-ADLLDEALAVA 199 (263)
T ss_dssp TTSCSEEECG-GGHHHHHHHHH
T ss_pred CCCccEecCc-hHHHHHHHHHH
Confidence 9999999975 34445555543
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=86.06 E-value=0.39 Score=56.70 Aligned_cols=86 Identities=16% Similarity=0.039 Sum_probs=55.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e-A~~ 170 (256)
T 3pe8_A 92 TKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQD-ALR 170 (256)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876543 1223344444321 00111112221 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+.+.++..
T Consensus 171 ~GLv~~vv~~-~~l~~~a~~~a~ 192 (256)
T 3pe8_A 171 AGLVTEVVAH-DDLLTAARRVAA 192 (256)
T ss_dssp HTSCSCEECG-GGHHHHHHHHHH
T ss_pred CCCCeEEeCH-hHHHHHHHHHHH
Confidence 8999999975 444555555543
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=85.97 E-value=0.43 Score=57.05 Aligned_cols=87 Identities=15% Similarity=0.036 Sum_probs=53.7
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh---------HHHHHhhccc----ccccccccCcceeecccC
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF---------SALNKLLGRE----VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~---------~al~~~lG~~----vy~s~~~lGG~~i~~~nG 1845 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. ..+-+.+|.. +.-+.+.+.+.+ ...-|
T Consensus 117 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~~~~~~~~~vG~~~A~~llltG~~i~A~e-A~~~G 195 (279)
T 3t3w_A 117 PKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGVEYHGHTWELGPRKAKEILFTGRAMTAEE-VAQTG 195 (279)
T ss_dssp SSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSCSSCCHHHHHCHHHHHHHHHHCCCEEHHH-HHHHT
T ss_pred CCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCchHHHHHhhcCHHHHHHHHHcCCccCHHH-HHHCC
Confidence 469999999999999999999999999999976544210 0011122211 100111112222 34689
Q ss_pred ceEEEecCcHHHHHHHHHHHhc
Q 000086 1846 VVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
++|.++++ .+..+.+++|..-
T Consensus 196 Lv~~vv~~-~~l~~~a~~~a~~ 216 (279)
T 3t3w_A 196 MVNRVVPR-DRLDAETRALAGE 216 (279)
T ss_dssp SCSEEECG-GGHHHHHHHHHHH
T ss_pred CCcEeeCh-HHHHHHHHHHHHH
Confidence 99999964 4455555555443
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=85.88 E-value=6.5 Score=46.32 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=66.5
Q ss_pred ccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1980 VWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1980 ~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
.+.++......++++.+.+ .++-+|+|.-. +.|+.|.+-. .....+....++..+..+.+|+|+.|-
T Consensus 39 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 116 (257)
T 1szo_A 39 VWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVN-- 116 (257)
T ss_dssp EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC--
Confidence 6788888999999998876 46777777654 3377664311 112233345678889999999999998
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.||..+++.+ |+ .+|.++++++.
T Consensus 117 G~a~GG~~Lalac----D~--ria~~~a~f~~ 142 (257)
T 1szo_A 117 GPVTNAPEIPVMS----DI--VLAAESATFQD 142 (257)
T ss_dssp SCBCSSTHHHHTS----SE--EEEETTCEEEC
T ss_pred CchHHHHHHHHHC----CE--EEEeCCCEEec
Confidence 5555777666654 77 88999998886
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=85.83 E-value=27 Score=41.15 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=65.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEec-C-CCCCCchhh-hh-------hhHHHHH-HHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILAN-W-RGFSGGQRD-LF-------EGILQAG-STIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-~-~Gf~~G~~~-e~-------~gilk~g-a~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.+ ..+-+|+|.- . +.|+.|.+- +. ....+.. ..++..+..+.+|+|+.|-
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 109 (265)
T 2ppy_A 30 NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLE 109 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57888999999999998876 5677777765 3 236666431 11 1122334 5678889999999999988
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCc-EEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTA-KGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A-~~gv 2080 (2304)
|...+||..+++. .|+ .+|.+++ ++|.
T Consensus 110 -G~a~GgG~~lala----cD~--ria~~~ag~f~~ 137 (265)
T 2ppy_A 110 -GHTVGGGLEMALA----CDL--RFMGDEAGKIGL 137 (265)
T ss_dssp -SEEETHHHHHHHT----SSE--EEEETTCCCEEC
T ss_pred -CEEeeHHHHHHHh----CCE--EEEeCCCCEEEC
Confidence 3344445555554 477 8899999 8886
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.77 Score=54.86 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=59.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 193 (277)
T 4di1_A 115 PKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEE-ALA 193 (277)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 3699999999999999999999999999999876542 1233444444321 00111222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
-|++|.++++ .+..+.+++|..-+
T Consensus 194 ~GLV~~vv~~-~~l~~~a~~~a~~l 217 (277)
T 4di1_A 194 LGLIDDMVAP-DDVYDSAVAWARRY 217 (277)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHTT
T ss_pred CCCccEEeCh-hHHHHHHHHHHHHH
Confidence 8999999974 56777777777655
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=85.64 E-value=0.47 Score=56.97 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=55.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEec-CcceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRL-DQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~-~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+.+ ++.+.+. |..-|-+.+|... .-+.+.+.+.+ ..
T Consensus 106 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~e-A~ 184 (287)
T 3gkb_A 106 PQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAET-AA 184 (287)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 369999999999999999999999999999 7765543 2233444445321 00111122222 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.++++ .+..+.+.++..
T Consensus 185 ~~GLV~~vv~~-~~l~~~a~~lA~ 207 (287)
T 3gkb_A 185 SYGWINRALPA-DELDEYVDRVAR 207 (287)
T ss_dssp HHTSSSEEECH-HHHHHHHHHHHH
T ss_pred HCCCCcEEeCh-hHHHHHHHHHHH
Confidence 68999999975 445555555543
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=85.51 E-value=5.8 Score=46.86 Aligned_cols=96 Identities=21% Similarity=0.121 Sum_probs=66.7
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCC-CCchhh-hh------------hhHHHHHHHHHHHHHcCCCCE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGF-SGGQRD-LF------------EGILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf-~~G~~~-e~------------~gilk~ga~iv~al~~~~vP~ 2041 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.| +.|..- +. ....+....++.++..+.+|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 104 (263)
T 3lke_A 25 KNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVT 104 (263)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 358899999999999998876 45667666543 447 666431 11 112334566788899999999
Q ss_pred EEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2042 FVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2042 i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+.|- |...+||..+++. .|+ .+|.+++++|.
T Consensus 105 IAav~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 136 (263)
T 3lke_A 105 VALIN-GYAYGGGFNMMLA----CDR--RIALRRAKFLE 136 (263)
T ss_dssp EEEEC-SEEETHHHHGGGG----SSE--EEEETTCEEEC
T ss_pred EEEEC-CEeeHHHHHHHHH----CCE--EEEcCCCEEeC
Confidence 99998 3444445555555 477 88999998875
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=85.38 E-value=0.23 Score=48.07 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=32.2
Q ss_pred CCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 684 ~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
......|+||..|+|.++++++|+.|..|++|+.|+
T Consensus 42 ~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~ 77 (80)
T 1pmr_A 42 DKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp SSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred cceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334578999999999999999999999999999876
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=85.23 E-value=0.58 Score=56.46 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=54.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.- ..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 130 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~e-A~~ 208 (298)
T 3qre_A 130 RKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE-AAQ 208 (298)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHH-HHH
T ss_pred CCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999998866632 223444444322 00111111111 236
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 209 ~GLV~~vv~~~-~l~~~a~~~ 228 (298)
T 3qre_A 209 LGLVKEVVTPE-QLMPRALEY 228 (298)
T ss_dssp TTSCSEEECGG-GHHHHHHHH
T ss_pred cCCCeEecCHH-HHHHHHHHH
Confidence 89999999754 344444443
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=84.91 E-value=1 Score=57.17 Aligned_cols=89 Identities=21% Similarity=0.108 Sum_probs=58.0
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC----------hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG----------FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG----------~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++.- ..-|-+.+|... .-+...+.+.+ ...-
T Consensus 284 pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g~~~L~rlvG~~~A~ellLtG~~i~A~E-A~~~ 362 (440)
T 2np9_A 284 EKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSRQVILEGRRIWAKE-PEAR 362 (440)
T ss_dssp CCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCEETTS-GGGG
T ss_pred CCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHHC
Confidence 46999999999999999999999999999987654431 112222333211 01112222222 3568
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYVP 1869 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~LsylP 1869 (2304)
|++|.++++ .+....+.++..-++
T Consensus 363 GLV~~Vvp~-~eL~~~a~~~A~~la 386 (440)
T 2np9_A 363 LLVDEVVEP-DELDAAIERSLTRLD 386 (440)
T ss_dssp GTCSEEECH-HHHHHHHHHHHHTTC
T ss_pred CCCcEecCh-HHHHHHHHHHHHHhC
Confidence 999999964 455666777766553
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=84.83 E-value=0.82 Score=56.07 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEe-cCcceEec-----------ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~-~~~~i~lt-----------G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-|-+.+|... .-+.+.+.+ +=..
T Consensus 167 ~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A-~eA~ 245 (334)
T 3t8b_A 167 PKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTA-EQMH 245 (334)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEH-HHHH
T ss_pred CCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCH-HHHH
Confidence 46999999999999999999999999999 88776543 2333444444322 001111111 1134
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|+++.++++ .+..+.+++|..
T Consensus 246 ~~GLV~~vv~~-~~l~~~a~~~A~ 268 (334)
T 3t8b_A 246 QMGAVNAVAEH-AELETVGLQWAA 268 (334)
T ss_dssp HHTSCSEEECG-GGHHHHHHHHHH
T ss_pred HCCCCcEecCH-HHHHHHHHHHHH
Confidence 68999999975 445555555543
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=84.79 E-value=34 Score=41.25 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=59.2
Q ss_pred ccCHHHHHHHHHHHHHhhc------cCCCEEEEecC-CCCCCchhhh-h---------hhHHHHHHH---HHHHH---Hc
Q 000086 1980 VWFPDSATKTAQALMDFNR------EELPLFILANW-RGFSGGQRDL-F---------EGILQAGST---IVENL---RT 2036 (2304)
Q Consensus 1980 ~~~p~sa~K~a~~i~~~~~------~~lPLv~l~d~-~Gf~~G~~~e-~---------~gilk~ga~---iv~al---~~ 2036 (2304)
.+.++-.....++++.+.. ..+-+|+|.-. +.|+.|..-. . .....+... .+..+ ..
T Consensus 59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (305)
T 3m6n_A 59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLG 138 (305)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6888888888888888765 46778887654 3487775321 1 111122222 23333 24
Q ss_pred CCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2037 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2037 ~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.+|+|+.|- |...+||..+++.+ |+ .+|.++|+++.
T Consensus 139 ~~kPvIAaV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~ 175 (305)
T 3m6n_A 139 ARAHSIALVQ-GNALGGGFEAALSC----HT--IIAEEGVMMGL 175 (305)
T ss_dssp TTCEEEEEEC-SCEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred CCCCEEEEEC-CEeehHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 6899999988 34444555555554 66 88888888876
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=84.66 E-value=19 Score=42.23 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=67.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh---hhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF---EGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2053 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~---~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G 2053 (2304)
..++++......++++.+.. ..+-+|+|.-. +.|+.|.+-.. .........++..+..+.+|+|+.|- |...+|
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G~a~Gg 106 (255)
T 3p5m_A 28 NAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVH-GAAVGF 106 (255)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEEC-SEEETH
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeC-Ceehhh
Confidence 58899999999999998876 46777777544 45877754111 12334456788889999999999998 344444
Q ss_pred hhhhhcccccCCccceeecccCcEEEe
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|..+++.+ |+ ++|.++++++.
T Consensus 107 G~~lalac----D~--~ia~~~a~f~~ 127 (255)
T 3p5m_A 107 GCSLALAC----DL--VVAAPASYFQL 127 (255)
T ss_dssp HHHHHHHS----SE--EEECTTCEEEC
T ss_pred HHHHHHHC----CE--EEEcCCcEEeC
Confidence 55556554 77 88888888776
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=84.59 E-value=8.8 Score=45.20 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=64.7
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhh-h------------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
..++++......++++.+.....-+|+|.-. +.|+.|.+-. . ....+....++..+..+.+|+|+.
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 107 (261)
T 2gtr_A 28 NSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA 107 (261)
T ss_dssp TEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5888999999999998886644455666543 4588875421 1 011223456678889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|- |...+||..+++. .|+ .+|.++++++.-+
T Consensus 108 v~-G~a~GgG~~lala----cD~--ria~~~a~f~~pe 138 (261)
T 2gtr_A 108 VN-GPAIGLGASILPL----CDV--VWANEKAWFQTPY 138 (261)
T ss_dssp EC-SCEETHHHHTGGG----SSE--EEEETTCEEECCT
T ss_pred EC-CeEeeHHHHHHHh----CCE--EEEcCCCEEeCch
Confidence 88 3444445555554 477 8888888887643
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=84.44 E-value=11 Score=45.23 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhh-hh------------hHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL-FE------------GILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e-~~------------gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.+++++......++++.+.....-+|+|.-. +.|+.|.+-. .. ...+....++.++..+.+|+|+.
T Consensus 46 Nal~~~m~~~L~~al~~~~~d~~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 125 (291)
T 2fbm_A 46 NALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS 125 (291)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5888999999999999887654456766654 4488775421 10 11123446677889999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |...+||.-+++. +|+ ++|.++|+++.
T Consensus 126 V~-G~a~GgG~~Lala----cD~--ria~~~a~f~~ 154 (291)
T 2fbm_A 126 VN-GPAIGLGASILPL----CDL--VWANEKAWFQT 154 (291)
T ss_dssp EC-SCEETHHHHTGGG----SSE--EEEETTCEEEC
T ss_pred EC-CeeecHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 98 3444445555554 477 88999998876
|
| >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
|---|
Probab=84.32 E-value=0.47 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+.|+=.+.+|+.||+|++||+|+++.-
T Consensus 91 l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 91 LKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred cCCCccEEEEeCCCEEcCCCEEEEECH
Confidence 344455569999999999999999873
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.17 E-value=0.65 Score=46.90 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=32.1
Q ss_pred cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000086 723 MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2304)
Q Consensus 723 m~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~ 758 (2304)
-...|.||.+|+|..+ +++|+.|.+||+|++|+..+
T Consensus 13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence 4567899999999888 99999999999999998754
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=83.51 E-value=41 Score=39.67 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=65.9
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh--------------hhHHHHHHHHHHHHHcCCCCEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF--------------EGILQAGSTIVENLRTYKQPVF 2042 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~--------------~gilk~ga~iv~al~~~~vP~i 2042 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-.. ....+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (269)
T 1nzy_A 25 NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL 104 (269)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 58889999999999998876 46777777654 34776653210 1122234567788999999999
Q ss_pred EEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2043 ~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+.|- |...+||..+++. .|+ .+|.++++++.
T Consensus 105 Aav~-G~a~GgG~~lal~----cD~--ria~~~a~f~~ 135 (269)
T 1nzy_A 105 AAIN-GVAAGGGLGISLA----SDM--AICADSAKFVC 135 (269)
T ss_dssp EEEC-SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEC-CeeecHHHHHHHh----CCE--EEecCCCEEeC
Confidence 9998 3344445555555 477 88888888876
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.50 E-value=0.42 Score=48.33 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=32.1
Q ss_pred CCeeeeCCCceeEEEEccCCCEE-ccCCcEEEEEcc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHI-DADTPYAEVEVM 721 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V-~~G~~l~~iEaM 721 (2304)
...|+||..|+|.+++|++|+.| ..||+|+.|+..
T Consensus 50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 46799999999999999999998 999999999853
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=83.42 E-value=0.97 Score=55.84 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=53.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccc---ccccccccCcceeecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGRE---VYSSHMQLGGPKIMATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~---vy~s~~~lGG~~i~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+.++.|.. +.-+...+.+.+ ...-|
T Consensus 106 kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~e-A~~~G 184 (353)
T 4hdt_A 106 KPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGAD-AIVMG 184 (353)
T ss_dssp SCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSSTTHHHHHHHHCCCBCHHH-HHHHT
T ss_pred CCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhhHHHHHHHhcCCCCCHHH-HHHcC
Confidence 699999999999999999999999999999875543 122233333321 000112222222 34689
Q ss_pred ceEEEecCcHHHHHHHHHHH
Q 000086 1846 VVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~L 1865 (2304)
+++.+|+++ +..+..+.+.
T Consensus 185 Lv~~vv~~~-~l~~~a~~la 203 (353)
T 4hdt_A 185 FADHYVPHD-KIDEFTRAVI 203 (353)
T ss_dssp SCSEECCGG-GHHHHHHHHH
T ss_pred CCcEEeCHH-HHHHHHHHHH
Confidence 999999754 3334444444
|
| >2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.21 E-value=0.55 Score=52.90 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=39.8
Q ss_pred ccCCCEEccCCcEEEEEccccceeeecCCCcEEEE-----------------------------eeCCCCccCCCCEEE
Q 000086 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQF-----------------------------KMAEGQAMQAGELIA 752 (2304)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~-----------------------------i~~~G~~v~~G~~La 752 (2304)
|++|+.|++||+|+ =...+.|..+|+|.+ +|++|+.|++|+.|.
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence 79999999999999 467789999999975 789999999999987
|
| >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
|---|
Probab=83.20 E-value=1.3 Score=48.81 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=17.7
Q ss_pred EccCCCEEccCCcEEEEEc
Q 000086 702 LVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 702 ~V~~Gd~V~~G~~l~~iEa 720 (2304)
+|+.||+|++||+|+++.-
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 99 IAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp CSCTTCEECTTCEEEEECH
T ss_pred EEeCcCEECCCCEEEEECH
Confidence 9999999999999999973
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
|---|
Probab=83.13 E-value=0.56 Score=49.82 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCC-EEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd-~V~~G~~l~~iEa 720 (2304)
...|.||..|+|.+++|++|| .|+.||+|++|+.
T Consensus 70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 467999999999999999998 8999999999985
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=82.94 E-value=27 Score=41.20 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh---h---hHHHHHHH-HHHHH-H--cCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF---E---GILQAGST-IVENL-R--TYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~---~---gilk~ga~-iv~al-~--~~~vP~i~~I 2045 (2304)
...++.+......++++.+.. ..+-+|+|.-. +.|+.|..-.. . ...+.... ++.++ . .+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav 109 (265)
T 3rsi_A 30 RNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAV 109 (265)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHHHHHTTSSCCCSSCEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEE
Confidence 358899999999999998876 46777777554 44777754210 0 01111133 77788 8 8999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |...+||..+++. .|+ ++|.++++++.
T Consensus 110 ~-G~a~GgG~~lala----cD~--~ia~~~a~f~~ 137 (265)
T 3rsi_A 110 N-GACLGGGCEMLQQ----TDI--RVSDEHATFGL 137 (265)
T ss_dssp C-SCEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred C-CeeeHHHHHHHHH----CCE--EEecCCCEEEC
Confidence 8 3444445555555 477 88889988875
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=82.87 E-value=0.29 Score=47.29 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 4679999999999999999999999999999864
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.85 E-value=0.51 Score=48.62 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCeeeeCCCceeEEEEccCCC-EEccCCcEEEEEc
Q 000086 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd-~V~~G~~l~~iEa 720 (2304)
...|+||..|+|.+++|++|+ .|..|++|++|+.
T Consensus 50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 467999999999999999999 8999999999984
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=82.81 E-value=37 Score=40.14 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh-hh-h------------------hHHHHHHHHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-LF-E------------------GILQAGSTIVENLR 2035 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~-e~-~------------------gilk~ga~iv~al~ 2035 (2304)
...+.++......++++.+.+ ..+-+|+|.-. +.|+.|.+- +. . ...+....++.++.
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (275)
T 1dci_A 25 RNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIE 104 (275)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 358899999999999998876 46777777654 347777541 11 0 01122345677889
Q ss_pred cCCCCEEEEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2036 TYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2036 ~~~vP~i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
.+.+|+|+.|- |-+.| |..+++. .|+ .+|.++|+++.-+
T Consensus 105 ~~~kPvIAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe 144 (275)
T 1dci_A 105 KCPKPVIAAIH--GGCIGGGVDLISA----CDI--RYCTQDAFFQVKE 144 (275)
T ss_dssp HSSSCEEEEEC--SEEETHHHHHHTT----SSE--EEEETTCEEECCG
T ss_pred hCCCCEEEEEC--CeeeHHHHHHHHh----CCE--EEEeCCCEEeCcc
Confidence 99999999998 54444 5555554 477 8888888887643
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.69 E-value=0.82 Score=55.66 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=40.8
Q ss_pred EEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|+.|+.-..=.....|++. -+..|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 9 ~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 9 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ----CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 445555544444455666665 4668999999999999 9999999999999999543
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=82.59 E-value=38 Score=39.68 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=65.4
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h------hhHHH-HHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------EGILQ-AGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~------~gilk-~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
...++++-.....++++.+.+ .++-+|+|.-. +.|+.|.+-. . ..... ....++.++..+.+|+|+.|-
T Consensus 24 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 102 (257)
T 2ej5_A 24 LNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVN- 102 (257)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEEC-
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 358889999999999998876 46777777653 4477665321 1 11111 245677889999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.+++++|.
T Consensus 103 G~a~GgG~~lalac----D~--ria~~~a~f~~ 129 (257)
T 2ej5_A 103 GAAAGAGMSLALAC----DF--RLLSEKASFAP 129 (257)
T ss_dssp SEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred ccccchhHHHHHhC----CE--EEEcCCCEEeC
Confidence 34444455555553 66 88888888876
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.93 E-value=38 Score=39.77 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=64.5
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh--hhh-----hHHHHHHHHHHHHHcCCCCEEEEEcCCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE-----GILQAGSTIVENLRTYKQPVFVYIPMMA 2049 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~--e~~-----gilk~ga~iv~al~~~~vP~i~~I~~~g 2049 (2304)
.+++.+-.....++++.+.. ..+-+|+|.-.+ .|+.|.+- +.. ........+...+..+.+|+|+.|- |.
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-G~ 105 (258)
T 4fzw_A 27 NALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVN-GY 105 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEEC-SE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEc-Cc
Confidence 58889999999999998877 567787775443 26666421 111 1111245678889999999999998 33
Q ss_pred cCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2050 ELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2050 e~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
..+||.-+++. .|+ .+|.++++++.
T Consensus 106 a~GgG~~lala----cD~--ria~~~a~f~~ 130 (258)
T 4fzw_A 106 ALGAGCELALL----CDV--VVAGENARFGL 130 (258)
T ss_dssp EETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred ceeeeeEeecc----cce--EEECCCCEEEC
Confidence 44445555554 477 88888888875
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=81.72 E-value=24 Score=41.32 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-h-------hhHHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-------EGILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~-------~gilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++++......++++.+.+ .++-+|+|.-. +.|+.|.+-. . ....+.. .++..+..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~l~~~~kPvIAav~-G 104 (258)
T 2pbp_A 27 NALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQF-ADWDRLSIVKTPMIAAVN-G 104 (258)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTT-HHHHHHHTCCSCEEEEEC-S
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHH-HHHHHHHhCCCCEEEEEc-C
Confidence 57889999999999998876 46777777653 2366665321 1 0001112 567788999999999998 3
Q ss_pred CcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2049 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2049 ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
...+||..+++. .|+ .+|.+++++|.-
T Consensus 105 ~a~GgG~~lala----cD~--~ia~~~a~f~~p 131 (258)
T 2pbp_A 105 LALGGGFELALS----CDL--IVASSAAEFGFP 131 (258)
T ss_dssp EEETHHHHHHHT----SSE--EEEETTCEEECG
T ss_pred EEEhHHHHHHHh----CCE--EEEcCCCEEECc
Confidence 344445555555 477 888899988863
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=81.67 E-value=2.1 Score=45.80 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=67.6
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEEE-ccCCCCCCCccCHH
Q 000086 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFVE-VPGGTNNNNYANVQ 121 (2304)
Q Consensus 48 ~~kILIan~----G~~Av~iIrsar~~Gy~v~~~~~~i~~v-~vat~~D~~~~a~~ir~ADe~v~-vp~~~~~~sY~dvd 121 (2304)
-++|.|+|. |-.+..+++.+++.||+++..+..-+.+ .+-++.+...- ..-+|-.+. +|. ..+.
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el---~~~vDlvii~vp~-------~~v~ 83 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVREL---PKDVDVIVFVVPP-------KVGL 83 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGS---CTTCCEEEECSCH-------HHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHh---CCCCCEEEEEeCH-------HHHH
Confidence 368999998 9999999999999999876433322111 11122221111 112454443 331 2355
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHH
Q 000086 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2304)
Q Consensus 122 ~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam 167 (2304)
.+++-|.+.++.++|.-.+. +..++.+.+++.|+.++||.---+
T Consensus 84 ~v~~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~igpnc~g~ 127 (138)
T 1y81_A 84 QVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGRCIMV 127 (138)
T ss_dssp HHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSCCHHH
T ss_pred HHHHHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEcCCcceE
Confidence 66666666889999876544 345678888889999999875433
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=81.59 E-value=1.1 Score=52.84 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=54.8
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-c----------Ch-HHHHHhhcccc----cccccccCcceeec
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-T----------GF-SALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-t----------G~-~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
..|+|+.|.|.|+| |..++..||++|+.+++.+++ . |. .-+-+.+|... .-+...+.+.+ ..
T Consensus 108 ~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~e-A~ 185 (257)
T 1szo_A 108 EVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDART-AL 185 (257)
T ss_dssp CSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHH-HH
T ss_pred CCcEEEEECCchHH-HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HH
Confidence 36999999999995 899999999999999988776 1 21 23445555322 01111222222 23
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
.-|++|.++++ .+..+.+.+|..
T Consensus 186 ~~GLv~~vv~~-~~l~~~a~~~a~ 208 (257)
T 1szo_A 186 DYGAVNEVLSE-QELLPRAWELAR 208 (257)
T ss_dssp HHTSCSEEECH-HHHHHHHHHHHH
T ss_pred HCCCceEEeCh-HHHHHHHHHHHH
Confidence 68999999964 444555555543
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.38 E-value=5.2 Score=47.08 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=54.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 105 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e-A~~ 183 (258)
T 3lao_A 105 SKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADE-ALR 183 (258)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 36999999999999999999999999999998765532 223444444321 11112222222 236
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++ +..+.+++|
T Consensus 184 ~Glv~~vv~~~-~l~~~a~~~ 203 (258)
T 3lao_A 184 MRLLTEVVEPG-EELARALEY 203 (258)
T ss_dssp TTSCSEEECTT-CHHHHHHHH
T ss_pred cCCCcEeeChh-HHHHHHHHH
Confidence 89999999764 333444443
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=81.32 E-value=0.85 Score=53.50 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=55.9
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh----------HHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF----------SALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~----------~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. .-+-+.+|... .-+...+.+.+ ...-
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~~ 172 (250)
T 2a7k_A 94 NKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPR-CVDY 172 (250)
T ss_dssp CSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHH-HHHH
T ss_pred CCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHHHHHHHhHHHHHHHHHHcCCcccHHH-HHHc
Confidence 369999999999999999999999999999987554321 02334444221 11112222222 3468
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
|++|.++++ .+..+.+.+|..-
T Consensus 173 GLv~~vv~~-~~l~~~a~~~a~~ 194 (250)
T 2a7k_A 173 RLVNQVVES-SALLDAAITQAHV 194 (250)
T ss_dssp TCCSEEECH-HHHHHHHHHHHHH
T ss_pred CCcceecCH-HHHHHHHHHHHHH
Confidence 999999964 4455555555443
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=81.28 E-value=15 Score=43.68 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-hh-----HHH---HHHHHHHHHH---cCCCCEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-EG-----ILQ---AGSTIVENLR---TYKQPVFV 2043 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~g-----ilk---~ga~iv~al~---~~~vP~i~ 2043 (2304)
...++++......++++.+.+ ..+-+|+|.-. +.|+.|.+-.. .. ... ....++..+. .+.+|+|+
T Consensus 41 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIA 120 (278)
T 4f47_A 41 RNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIA 120 (278)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC----------------------CTTCBTTTTBSCCCSSCEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 358899999999999999876 56777777554 34877753211 00 000 1122334455 78899999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
.|- |...+||..+++. .|+ .+|.++++++.
T Consensus 121 av~-G~a~GgG~~lala----cD~--ria~~~a~f~~ 150 (278)
T 4f47_A 121 AVE-GPAIAGGTEILQG----TDI--RVAAESAKFGI 150 (278)
T ss_dssp EEC-SEEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred EEC-CEEehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 998 3444445555555 477 88888888875
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=81.27 E-value=5.1 Score=47.21 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=64.3
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC--CCCCCchhhh-h--------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW--RGFSGGQRDL-F--------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~--~Gf~~G~~~e-~--------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|..-. . ....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (260)
T 1sg4_A 26 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 105 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 47888999999999998876 45778877765 3477765321 1 11223345678889999999999998
Q ss_pred CCCcCCc-hhhhhcccccCCccceeecc--cCcEEEe
Q 000086 2047 MMAELRG-GAWVVVDSRINSDHIEMYAD--RTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~G-Ga~vv~~~~i~~d~~~~~A~--p~A~~gv 2080 (2304)
|-+.| |..+++. .|+ .+|. ++++++.
T Consensus 106 --G~a~GgG~~lala----cD~--~ia~~~~~a~f~~ 134 (260)
T 1sg4_A 106 --GACPAGGCLVALT----CDY--RILADNPRYCIGL 134 (260)
T ss_dssp --EEBCHHHHHHHTT----SSE--EEEECCTTCCBSC
T ss_pred --CeeehHHHHHHHh----CCE--EEEecCCCCEEeC
Confidence 54555 5555554 366 7777 7777654
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=81.03 E-value=10 Score=44.96 Aligned_cols=95 Identities=16% Similarity=0.051 Sum_probs=67.3
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhhh-h----------hhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL-F----------EGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~e-~----------~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..++++-.....++++.++...+-+|+|.-. +.|+.|.+-. . .........++..+..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 108 (267)
T 3hp0_A 29 NTINDTLIEECLQVLNQCETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVR 108 (267)
T ss_dssp TCBCSHHHHHHHHHHHHHHHSSCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 5788999999999999887756777888654 3477775311 1 11234456788889999999999998
Q ss_pred CCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2047 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2047 ~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||.-+++.+ |+ .+|.++|+++.
T Consensus 109 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 135 (267)
T 3hp0_A 109 -GKVNAGGLGFVSAT----DI--AIADQTASFSL 135 (267)
T ss_dssp -SEEETTHHHHHHHS----SE--EEECTTCEEEC
T ss_pred -CEEeehHHHHHHhC----CE--EEEcCCCEEEC
Confidence 34444455555553 77 88888888876
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=80.94 E-value=0.92 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=33.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL 1814 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l 1814 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+++
T Consensus 94 ~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~ 129 (253)
T 1uiy_A 94 PKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGY 129 (253)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEEC
T ss_pred CCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeC
Confidence 369999999999999999999999999999987655
|
| >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.83 E-value=0.96 Score=53.45 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=37.1
Q ss_pred ccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 710 DADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 710 ~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..=...+.|++- -...|.++.+|+|..+ +++|+.|.+||+|++|+..
T Consensus 9 ~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 9 ITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 333445666663 3567999999999999 9999999999999999644
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=80.79 E-value=25 Score=41.89 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=63.2
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-CCCCchhh-hhhh------HH-HHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LFEG------IL-QAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-Gf~~G~~~-e~~g------il-k~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
...++++......++++.++. ..+-+|+|.-.+ .|+.|..- +... .. ..... +..+..+.+|+|+.|-
T Consensus 46 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~-~~~l~~~~kPvIAav~- 123 (278)
T 3h81_A 46 LNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFAT-WGKLAAVRTPTIAAVA- 123 (278)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGG-GHHHHTCCSCEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHH-HHHHHhCCCCEEEEEC-
Confidence 358899999999999998876 467788886643 27777531 1100 00 11112 5678899999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|...+||..+++.+ |+ .+|.++++++.
T Consensus 124 G~a~GgG~~Lalac----D~--ria~~~a~f~~ 150 (278)
T 3h81_A 124 GYALGGGCELAMMC----DV--LIAADTAKFGQ 150 (278)
T ss_dssp BEEETHHHHHHHHS----SE--EEEETTCEEEC
T ss_pred CeeehHHHHHHHHC----CE--EEEcCCCEEEC
Confidence 34444455555554 77 88888888875
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=80.73 E-value=13 Score=44.81 Aligned_cols=98 Identities=19% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh-h----------------hHHHHHHHHHHHHHcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF-E----------------GILQAGSTIVENLRTYK 2038 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~-~----------------gilk~ga~iv~al~~~~ 2038 (2304)
...++++......++++.++. ..+-+|+|.-. +.|+.|.+-.. . ........++..+..+.
T Consensus 51 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (298)
T 3qre_A 51 LNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLR 130 (298)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------CCTTGGGGSS
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 358899999999999998876 46777777544 44776643110 0 00111223455677889
Q ss_pred CCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2039 QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2039 vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
+|+|+.|- |...+||..+++.+ |+ ++|.++++++.-+
T Consensus 131 kPvIAaV~-G~a~GgG~~Lalac----D~--ria~~~a~f~~pe 167 (298)
T 3qre_A 131 KPVIAAIN-GPCVGIGLTQALMC----DV--RFAAAGAKFAAVF 167 (298)
T ss_dssp SCEEEEEC-SCEETHHHHHHHHS----SE--EEEETTCEEECCC
T ss_pred CCEEEEEC-CceeecchHHHhhC----CE--EEEcCCCEEECcc
Confidence 99999998 44455566666654 77 8899999988744
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=80.69 E-value=1.7 Score=49.73 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=49.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCE--EEEecCcceEecChHH--------------------------HHHhhccccccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGFSA--------------------------LNKLLGREVYSS 1831 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~--~I~~~~~~i~ltG~~a--------------------------l~~~lG~~vy~s 1831 (2304)
.|+++++.|.+..+|+|++.-||. ++|.+++.|++..|.. +.+.+|+..-.=
T Consensus 86 ~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i 165 (208)
T 2cby_A 86 CDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 165 (208)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 488889999999999999999998 8999999888776531 222233221000
Q ss_pred ccccCcceee-----cccCceEEEecCcHHHHHHHHHH
Q 000086 1832 HMQLGGPKIM-----ATNGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1832 ~~~lGG~~i~-----~~nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
...+..-.++ .+.|++|.+..+..+.+++++..
T Consensus 166 ~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~~~ 203 (208)
T 2cby_A 166 EADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQLEH 203 (208)
T ss_dssp HHHHHTTCEEEHHHHHHHTSCSEECSCC----------
T ss_pred HHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHHHh
Confidence 0112222343 25899999998888877776654
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=80.59 E-value=0.86 Score=53.72 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=53.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|... .-+...+.+.+ ...
T Consensus 94 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 172 (257)
T 2ej5_A 94 EKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEE-AAA 172 (257)
T ss_dssp CSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 36999999999999999999999999999998765531 123334444221 00111122222 235
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++++ +..+.+.++.
T Consensus 173 ~GLv~~vv~~~-~l~~~a~~~a 193 (257)
T 2ej5_A 173 LGLATKVIPLS-DWEEEVKQFA 193 (257)
T ss_dssp HTCCSEEECGG-GHHHHHHHHH
T ss_pred cCCcceecChh-HHHHHHHHHH
Confidence 88999888643 3444444443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=80.40 E-value=2.7 Score=42.15 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=52.8
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccCHHHH
Q 000086 46 KPIHSILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYANVQLI 123 (2304)
Q Consensus 46 ~~~~kILIan~G~~Av~iIrsar~~G-y~v~~~~~~i~~v~vat~~D~~~~a~~ir-~ADe~v~vp~~~~~~sY~dvd~I 123 (2304)
.++++|+|+|.|.++..+++.+.+.| ++++ .+..+.. ...... .--..+.. ++.+.+.+
T Consensus 3 ~~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-----------~~~r~~~-~~~~~~~~~~~~~~~-------d~~~~~~~ 63 (118)
T 3ic5_A 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVT-----------VADHDLA-ALAVLNRMGVATKQV-------DAKDEAGL 63 (118)
T ss_dssp TTCEEEEEECCSHHHHHHHHHHHHCSSEEEE-----------EEESCHH-HHHHHHTTTCEEEEC-------CTTCHHHH
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCceEE-----------EEeCCHH-HHHHHHhCCCcEEEe-------cCCCHHHH
Confidence 35679999999999999999999998 6653 2211111 111111 11122322 33455666
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEE
Q 000086 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL 160 (2304)
Q Consensus 124 i~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fi 160 (2304)
.++.+ ++|.|+-.-+.... ..+.+.+.+.|+.++
T Consensus 64 ~~~~~--~~d~vi~~~~~~~~-~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 64 AKALG--GFDAVISAAPFFLT-PIIAKAAKAAGAHYF 97 (118)
T ss_dssp HHHTT--TCSEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred HHHHc--CCCEEEECCCchhh-HHHHHHHHHhCCCEE
Confidence 66553 68998866443221 234455555666554
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=80.14 E-value=13 Score=44.12 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=61.5
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhh-hhhH---------------HHHHHHHHHHHHcCCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FEGI---------------LQAGSTIVENLRTYKQ 2039 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e-~~gi---------------lk~ga~iv~al~~~~v 2039 (2304)
...++++......++++.+.. ..+-+|+|.-. +.|+.|.+-. .... +.....++..+..+.+
T Consensus 32 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 111 (274)
T 3tlf_A 32 LNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAK 111 (274)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCS
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCC
Confidence 358899999999999998876 46777777654 3366664311 1000 0011224455677889
Q ss_pred CEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2040 PVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2040 P~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|+|+.|- |...+||..+++.+ |+ ++|.++++++.
T Consensus 112 PvIAav~-G~a~GgG~~lalac----D~--~ia~~~a~f~~ 145 (274)
T 3tlf_A 112 PVLTAVN-GICCGAGMDWVTTT----DI--VIASEQATFFD 145 (274)
T ss_dssp CEEEEEC-SEEEGGGHHHHHHS----SE--EEEETTCEEEC
T ss_pred CEEEEEC-CeeehHHHHHHHhC----CE--EEEcCCCEEEC
Confidence 9999998 34444455555553 77 88889998876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2304 | ||||
| d1uyra2 | 404 | c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxyla | 1e-127 | |
| d1uyra1 | 333 | c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla | 1e-111 | |
| d1a9xa5 | 275 | d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta | 2e-39 | |
| d2j9ga3 | 216 | d.142.1.2 (A:115-330) Biotin carboxylase (BC), dom | 4e-39 | |
| d1w96a3 | 267 | d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M | 1e-38 | |
| d1w96a2 | 170 | c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N s | 7e-37 | |
| d1ulza3 | 214 | d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom | 2e-34 | |
| d2r7ka2 | 238 | d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo | 1e-31 | |
| d1a9xa6 | 259 | d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta | 2e-30 | |
| d1ulza2 | 114 | c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term | 3e-26 | |
| d2j9ga2 | 114 | c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term | 1e-25 | |
| d1w96a1 | 116 | b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C | 3e-24 | |
| d2j9ga1 | 116 | b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-do | 5e-23 | |
| d1pixa3 | 299 | c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase | 2e-21 | |
| d2r85a2 | 235 | d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo | 2e-21 | |
| d1ulza1 | 123 | b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-do | 7e-19 | |
| d1kjqa3 | 206 | d.142.1.2 (A:113-318) Glycinamide ribonucleotide t | 2e-17 | |
| d1i7na2 | 206 | d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor | 3e-14 | |
| d2a7sa2 | 271 | c.14.1.4 (A:278-548) Propionyl-CoA carboxylase com | 4e-14 | |
| d1vrga2 | 264 | c.14.1.4 (A:252-515) Propionyl-CoA carboxylase com | 4e-14 | |
| d3etja3 | 198 | d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo | 2e-12 | |
| d1uc8a2 | 192 | d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly | 5e-11 | |
| d1on3a2 | 264 | c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltra | 6e-11 | |
| d1iowa2 | 210 | d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain | 2e-10 | |
| d1ehia2 | 228 | d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V | 2e-08 | |
| d1xnya2 | 263 | c.14.1.4 (A:268-530) Propionyl-CoA carboxylase com | 5e-08 | |
| d1dcza_ | 77 | b.84.1.1 (A:) Biotin carboxyl carrier domain of tr | 2e-07 | |
| d2a7sa1 | 258 | c.14.1.4 (A:20-277) Propionyl-CoA carboxylase comp | 1e-06 | |
| d1k8ma_ | 87 | b.84.1.1 (A:) Lipoyl domain of the mitochondrial b | 1e-06 | |
| d1laba_ | 80 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 1e-06 | |
| d1pmra_ | 80 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 2e-06 | |
| d1pixa2 | 287 | c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A | 2e-06 | |
| d1on3a1 | 253 | c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltrans | 2e-05 | |
| d1e4ea2 | 211 | d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V | 1e-04 | |
| d1ghja_ | 79 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 2e-04 | |
| d1gsoa3 | 224 | d.142.1.2 (A:104-327) Glycinamide ribonucleotide s | 3e-04 | |
| d1xnya1 | 258 | c.14.1.4 (A:10-267) Propionyl-CoA carboxylase comp | 4e-04 | |
| d1iyua_ | 79 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 4e-04 | |
| d1vkza3 | 220 | d.142.1.2 (A:94-313) Glycinamide ribonucleotide sy | 5e-04 | |
| d1vrga1 | 251 | c.14.1.4 (A:1-251) Propionyl-CoA carboxylase compl | 8e-04 | |
| d1bdoa_ | 80 | b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox | 0.002 |
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 405 bits (1041), Expect = e-127
Identities = 184/413 (44%), Positives = 260/413 (62%), Gaps = 17/413 (4%)
Query: 1876 LPIISPLDPPDRPVEYLPEN--SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1933
+PI+ D DRPV++ P N + D R I G +G + G+FDK SF ETL GWA+
Sbjct: 4 VPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFFETLSGWAKG 62
Query: 1934 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAL 1993
VV GRARLGGIP+G++ VET+TV +IPADP +S E ++ + GQVW P+SA KTAQA+
Sbjct: 63 VVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAI 122
Query: 1994 MDF-NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2052
DF N E+LP+ ILANWRGFSGGQRD+F +L+ GS IV+ L YKQP+ +YIP ELR
Sbjct: 123 NDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELR 182
Query: 2053 GGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMA 2112
GG+WVVVD IN+D +EMYAD A+ VLEP+GM+ IKFR ++LL+ M RLD K +L +
Sbjct: 183 GGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRS 242
Query: 2113 KLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2172
+L + + + + +Q+ RE++LLP Y Q++ +FA+LHD S RM AKGVI + ++
Sbjct: 243 QLSNK--SLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELE 300
Query: 2173 WDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWL 2232
W ++R FF RLRRR+ E L+K L+ G+ + I I+ W+ S
Sbjct: 301 WTEARRFFFWRLRRRLNEEYLIKRLSHQVGE-ASRLEKIARIRSWYPASVD-------HE 352
Query: 2233 DDETFFTW-KDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLL 2284
DD TW +++ + + K++ L ++ L SD GL+ ++
Sbjct: 353 DDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIR--SDHDNAIDGLSEVI 403
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 354 bits (910), Expect = e-111
Identities = 168/374 (44%), Positives = 214/374 (57%), Gaps = 47/374 (12%)
Query: 1502 VNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSC 1561
+ Y L KR A TTY YDFP
Sbjct: 2 IATPYPVKEWLQPKRYKAHLMGTTYVYDFPE----------------------------- 32
Query: 1562 SCEKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGL 1621
F A W + +++ D EL ++ L VER PG
Sbjct: 33 --------LFRQASSSQWKNFSADVKLTDD-FFISNELIEDENG-----ELTEVEREPGA 78
Query: 1622 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLI 1681
N IGMVA+ + + TPE+P GR ++VAND+TFK GSFGP+ED FF VT+ A + +P I
Sbjct: 79 NAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRI 138
Query: 1682 YLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGS----SVIAHEM 1737
YLAANSGARIG+AEE+ F++ W D NPD+GF Y+YLT E + + + E
Sbjct: 139 YLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTER 198
Query: 1738 KLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYL 1797
+ +GE R+V+ +I+G EDGLGVE L GSG IAGA SRAY + FT+T VT R+VGIGAYL
Sbjct: 199 TVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYL 258
Query: 1798 ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEG 1857
RLG R IQ QPIILTG A+NK+LGREVY+S++QLGG +IM NGV HLT DDL G
Sbjct: 259 VRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAG 318
Query: 1858 ISAILKWLSYVPPH 1871
+ I++W+SYVP
Sbjct: 319 VEKIVEWMSYVPAK 332
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 146 bits (370), Expect = 2e-39
Identities = 33/189 (17%), Positives = 75/189 (39%), Gaps = 3/189 (1%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
+T EEA+A VG+P +I+ S+ GG G +N +E + + P + I +
Sbjct: 22 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 81
Query: 276 VASQSRHLEVQLLCDQYGNVAALHS--RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAA 333
+ E++++ D+ N + S ++ I P + + + A+
Sbjct: 82 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 141
Query: 334 RRLAKCVNY-VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392
+ + + G + V++ + + G +E+NPR+ + + + +
Sbjct: 142 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAV 201
Query: 393 GIPLWQIPE 401
G L ++
Sbjct: 202 GYTLDELMN 210
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Score = 143 bits (362), Expect = 4e-39
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 26/229 (11%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK+ + + A VP +P S + DD+ ++ A + +GY
Sbjct: 1 DKVSAIAAMKKAGVPCVPGSDG-----------PLGDDM---------DKNRAIAKRIGY 40
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQL 287
P +IKAS GGGG+G+R V D E+ + E +++ K RH+E+Q+
Sbjct: 41 PVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQV 100
Query: 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347
L D GN L RDCS+QRRHQK++EE P E + + + + + Y GA T
Sbjct: 101 LADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT 160
Query: 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
E+L+ E GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 161 FEFLF--ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPL 207
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 144 bits (363), Expect = 1e-38
Identities = 137/292 (46%), Positives = 186/292 (63%), Gaps = 30/292 (10%)
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIP---PESCLVTIPDDVYRQACVYTTEEAIASCQ 227
GDKI S+++AQ+A VP +PWSG+ V ++ LV++ DD+Y++ C + E+ + +
Sbjct: 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287
+G+P MIKAS GGGGKGIR+V +++ AL+ Q E+PGSPIFIMK+A ++RHLEVQL
Sbjct: 61 RIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQL 120
Query: 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347
L DQYG +L RDCSVQRRHQKIIEE P+T+A ET ++E+AA RL K V YV A T
Sbjct: 121 LADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGT 180
Query: 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG 407
VEYLYS + G++YFLELNPRLQVEHP TE ++ +NLPAAQ+ + MGIP+ +I +IR YG
Sbjct: 181 VEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYG 240
Query: 408 MEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDG-FKPT 458
M + ++D +P
Sbjct: 241 MNP--------------------------HSASEIDFEFKTQDATKKQRRPI 266
|
| >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Acetyl-CoA carboxylase, BC-N subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 135 bits (341), Expect = 7e-37
Identities = 87/150 (58%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 23 AVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAIL 82
+ S + +F +S GG I ILIANNG+AAVK IRS+R WAYETFG ++ +
Sbjct: 21 GLNTVDKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQ 80
Query: 83 LVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHA 142
VAMATPED+ NAE+IR+ADQ++EVPGGTNNNNYANV LIV++AE VDAVW GWGHA
Sbjct: 81 FVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHA 140
Query: 143 SEIPELPDTL--STKGIIFLGPPATSMAAL 170
SE P LP+ L S + +IF+GPP +M +L
Sbjct: 141 SENPLLPEKLSQSKRKVIFIGPPGNAMRSL 170
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Score = 129 bits (326), Expect = 2e-34
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 26/228 (11%)
Query: 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232
K S + + A VP +P S + + EEA A + +GYP
Sbjct: 1 KARSKEVMKKAGVPVVPGS---------------------DGVLKSLEEAKALAREIGYP 39
Query: 233 AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLL 288
++KA+ GGGG+GIR N++E+ ++Q E + + K +H+E Q+L
Sbjct: 40 VLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVL 99
Query: 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATV 348
D++GNV L RDCS+QRR+QK++E P + E + + AK + Y A T+
Sbjct: 100 GDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTM 159
Query: 349 EYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
E++ + G YF+E+N R+QVEHPV+E + I++ Q+ + G PL
Sbjct: 160 EFIAD-QEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPL 206
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Score = 123 bits (309), Expect = 1e-31
Identities = 21/214 (9%), Positives = 58/214 (27%), Gaps = 31/214 (14%)
Query: 219 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE-----VPGSPIFI 273
+ S + + ++K GG+G + +E + ++ + I
Sbjct: 16 VPKKYESPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHI 75
Query: 274 MKVASQSR------------HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVA 321
+ + +E+ + +Y + R + + I IT
Sbjct: 76 EEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGN 135
Query: 322 P-----LETVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQV 370
+ ++ + +L +G ++ L + E E++ R+
Sbjct: 136 IPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNEN-LELVVFEMSARVDG 194
Query: 371 EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRR 404
+ + + EI+
Sbjct: 195 GTNSF--MNGGPYSFLYNGEPLSMGQRIAREIKM 226
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 120 bits (301), Expect = 2e-30
Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 17/218 (7%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
V E A+ + +GYP +++AS+ GG+ + V+++ ++R F+ +P+ +
Sbjct: 19 VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 78
Query: 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLE---QA 332
+ ++V +CD G + + +++ + A + + + Q
Sbjct: 79 FLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ 136
Query: 333 ARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392
++LA + G V++ + E Y +E+NPR P + L V
Sbjct: 137 VQKLAFELQVRGLMNVQFAV--KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMA 194
Query: 393 GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430
G + E + SV F+
Sbjct: 195 G---KSLAEQGVTKEVIPPYY-------SVKEVVLPFN 222
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 103 bits (257), Expect = 3e-26
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
++ +L+AN G AV+ IR+ + T +A ++ A H+++AD+
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPT-----------VAIYNEVESTARHVKLADEAYM 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G + Y N Q I+ +A DA+ PG+G +E E GI F+GP +
Sbjct: 51 I-GTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVI 109
Query: 168 AALGD 172
+GD
Sbjct: 110 ELMGD 114
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 1e-25
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ I+IAN G A++ +R+ + +T +A + +H+ +AD+ V
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKT-----------VAVHSSADRDLKHVLLADETVC 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ + +Y N+ I+ AE+T A+ PG+G SE + + G IF+GP A ++
Sbjct: 51 IGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETI 110
Query: 168 AALG 171
+G
Sbjct: 111 RLMG 114
|
| >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 116 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Acetyl-CoA carboxylase, BC-C subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.5 bits (242), Expect = 3e-24
Identities = 69/116 (59%), Positives = 86/116 (74%)
Query: 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVF 497
KGHC A R+TSEDP+DGFKP+ G + EL+F+S NVW YFSV + G IH FSDSQFGH+F
Sbjct: 1 KGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIF 60
Query: 498 AFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
AFGE+R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I TGWLD I
Sbjct: 61 AFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 116
|
| >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Escherichia coli [TaxId: 562]
Score = 93.9 bits (233), Expect = 5e-23
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVF 497
+GH V R+ +EDP+ F P+ GK+ V + +G + + DS G +
Sbjct: 1 RGHAVECRINAEDPNT-FLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLI 59
Query: 498 AFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555
+GE+R +AIA M L+E+ I I+TNVD I +++ +++ + +L+ ++ +
Sbjct: 60 CYGENRDVAIARMKNALQELIID-GIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL 116
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Score = 94.8 bits (235), Expect = 2e-21
Identities = 53/322 (16%), Positives = 99/322 (30%), Gaps = 56/322 (17%)
Query: 1867 YVPPHIGGALPIISPLDPPDRPVEYLPENS---CDPRAAICGFLDNNGKWIGGIFDKDSF 1923
Y P P +P P D +P N D I +FD
Sbjct: 1 YDPEFFRVDDPK-APAFPADDLYSMVPLNDKRAYDIYNVI-----------ARLFDNSEL 48
Query: 1924 VETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFP 1983
E +G+ +VTG A++ G+ VG+VA +M G +
Sbjct: 49 HEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAG-------SVGIGGKLYR 101
Query: 1984 DSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFV 2043
K + + R+ LP+ + + G G +L G +++ +++T P F
Sbjct: 102 QGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFE 161
Query: 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRL 2103
+V+ + N + + V+ E +
Sbjct: 162 ITLRKG-TAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYS----------- 209
Query: 2104 DQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAA 2163
+AK ++A + ++ + I+A + P A
Sbjct: 210 -----RRLAKDRKAGKDLQ-PTIDKMNNLIQAFYTKSRPKV----------------CAE 247
Query: 2164 KGVIKEVVDWDKSRSFFCRRLR 2185
G++ E+VD +K R +
Sbjct: 248 LGLVDEIVDMNKIRGYVEAFTE 269
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Score = 93.0 bits (230), Expect = 2e-21
Identities = 26/208 (12%), Positives = 54/208 (25%), Gaps = 28/208 (13%)
Query: 221 EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI--------- 271
E + P ++K GGKG + ++ ++ G +
Sbjct: 18 EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYV 77
Query: 272 ----FIMKVASQSRHLEVQLLCDQYGN---VAALHSRDCSVQRRHQKIIEE----GPITV 320
E++L+ V A+ Q I V
Sbjct: 78 LGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIV 137
Query: 321 APLETVKKLEQAARRLAKCVN-----YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVT 375
+ + +A R+ K G +E ++ E+ E++ R+ +
Sbjct: 138 LRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVF-TPDLEFVVFEISARIVAGTNIF 196
Query: 376 EWIAEINLPAAQVAVGMGIPLWQIPEIR 403
+ + + EIR
Sbjct: 197 --VNGSPYTWLRYDRPVSTGRRIAMEIR 222
|
| >d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Aquifex aeolicus [TaxId: 63363]
Score = 82.4 bits (203), Expect = 7e-19
Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 439 GHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFA 498
G+ + R+ +EDP F P++ ++ + + G + + DS +
Sbjct: 3 GYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLIT 62
Query: 499 FGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
+ + A+ M L+ +I ++T + I+++ D++ K T +L+
Sbjct: 63 WAPTWDEAVERMRAALETYEIT-GVKTTIPLLINIMKEKDFKAGKFTTKYLE 113
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Score = 80.5 bits (197), Expect = 2e-17
Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 33/230 (14%)
Query: 178 LIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKA 237
L A+ +PT + + + +GYP ++K
Sbjct: 8 LAAEELQLPTSTY-----------------------RFADSESLFREAVADIGYPCIVKP 44
Query: 238 SWGGGGKGIRKVHNDDEVRALFKQVQ--GEVPGSPIFIMKVASQSRHLEVQLLCDQYGNV 295
GKG + + +++ +K Q G + + V + + + G
Sbjct: 45 VMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVH 104
Query: 296 AALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355
+++ + ++ + G +
Sbjct: 105 FCAPVGHRQEDGDYRESWQPQQMSPLA-----LERAQEIARKVVLALGGYGLFGVELFVC 159
Query: 356 TGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRF 405
E F E++PR VT +++ A V +G+P+ IR++
Sbjct: 160 GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPV---GGIRQY 206
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.6 bits (174), Expect = 3e-14
Identities = 20/160 (12%), Positives = 44/160 (27%), Gaps = 13/160 (8%)
Query: 220 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279
+ +P ++K G G KV N + + + V
Sbjct: 40 PNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQT--YATAEPFIDA 97
Query: 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKC 339
+ VQ + + Y S + + + + ++
Sbjct: 98 KYDIRVQKIGNNYKA---YMRTSISGNWKTNTGSAMLE----QIAMSDRYKLWVDACSEM 150
Query: 340 VNYVGAATVEYLYSMETGEYYFLELN---PRLQVEHPVTE 376
+ V+ ++ + G+ Y E+ L EH V +
Sbjct: 151 FGGLDICAVKAVHG-KDGKDYIFEVMDCSMPLIGEHQVED 189
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.9 bits (178), Expect = 4e-14
Identities = 58/323 (17%), Positives = 99/323 (30%), Gaps = 78/323 (24%)
Query: 1870 PHIGGALPIISPLDPPDRPVEYL----PENS---CDPRAAICGFLDNNGKWIGGIFDKDS 1922
P A P + L P++ D I LD D
Sbjct: 1 PRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLD------------DE 48
Query: 1923 FVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWF 1982
F+E G+A+ +V G R+ G PVGIVA +
Sbjct: 49 FLEIQAGYAQNIVVGFGRIDGRPVGIVANQPT---------------------HFAGCLD 87
Query: 1983 PDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVF 2042
+++ K A+ + + +P+ +L + GF G + GI++ G+ ++ P
Sbjct: 88 INASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKI 147
Query: 2043 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGR 2102
I G V+ + D A TA+ V+ G + +R
Sbjct: 148 TVI-TRKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASGAVGFVYRQ--------- 195
Query: 2103 LDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMA 2162
+L EA N L+ Q + + + P A
Sbjct: 196 ----------QLAEAAANGEDIDKLRLRLQQEYEDTLVNP----------------YVAA 229
Query: 2163 AKGVIKEVVDWDKSRSFFCRRLR 2185
+G + V+ +R + LR
Sbjct: 230 ERGYVDAVIPPSHTRGYIGTALR 252
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Score = 72.5 bits (177), Expect = 4e-14
Identities = 57/315 (18%), Positives = 100/315 (31%), Gaps = 80/315 (25%)
Query: 1877 PIISPLDPPDRPVEYL---PENS---CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW 1930
P+ P + P + L P+N D R I + D F E +
Sbjct: 5 PVEDPDTSLETPEDILDILPDNPNKGYDVR-----------DVIKRVVDHGEFFEVQPYF 53
Query: 1931 ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTA 1990
A+ +V G AR+ G VGIVA + V DS+ K A
Sbjct: 54 AKNIVIGFARIQGKTVGIVANQPS---------------------VLAGVLDIDSSDKAA 92
Query: 1991 QALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAE 2050
+ + + +P+ + G+ G GI++ G+ ++ P I A
Sbjct: 93 RFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAY 152
Query: 2051 LRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDL 2110
G + + +D + + +A+ V+ PEG I F+ +
Sbjct: 153 -GGAYIAMGSKHLGADMVLAW--PSAEIAVMGPEGAANIIFKRE---------------- 193
Query: 2111 MAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2170
+ + R + E QQ A++G + V
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANP-----------------------YIAASRGYVDMV 230
Query: 2171 VDWDKSRSFFCRRLR 2185
+D ++R + R L
Sbjct: 231 IDPRETRKYIMRALE 245
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Score = 66.3 bits (160), Expect = 2e-12
Identities = 31/225 (13%), Positives = 60/225 (26%), Gaps = 32/225 (14%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
D++ + ++PT PW + E A +G
Sbjct: 1 DRLTQKQLFDKLHLPTAPW-----------------------QLLAERSEWPAVFDRLGE 37
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ 291
A++K GG + +E L + GE + + + S + +
Sbjct: 38 LAIVKRRTGGYDGRGQWRLRANETEQLPAECYGEC-----IVEQGINFSGEVSLVGARGF 92
Query: 292 YGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYL 351
G+ Q + P A + + +A +
Sbjct: 93 DGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVG----VMAME 148
Query: 352 YSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
+ EL PR+ T+ A I+ + +PL
Sbjct: 149 CFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPL 193
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Score = 61.9 bits (149), Expect = 5e-11
Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 38/225 (16%)
Query: 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232
K +S+ A +P P++ L T EEA+ + GYP
Sbjct: 1 KWATSVALAKAGLPQ-----------PKTALAT------------DREEALRLMEAFGYP 37
Query: 233 AMIKASWGGGGKGI--RKVHNDDEVRALFKQVQGEVPGSPIFIMK-VASQSRHLEVQLLC 289
++K G G+ + K+V G +I + V R + V ++
Sbjct: 38 VVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVG 97
Query: 290 DQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVE 349
++ S E P+ + A G V+
Sbjct: 98 ERAIAAIYRRSAHWITNTARGGQAENCPL--------TEEVARLSVKAAEAVGGGVVAVD 149
Query: 350 YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394
S E+N ++ ++ + +++P + +
Sbjct: 150 LFES--ERGLLVNEVNHTMEFKN--SVHTTGVDIPGEILKYAWSL 190
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Score = 63.2 bits (153), Expect = 6e-11
Identities = 48/300 (16%), Positives = 96/300 (32%), Gaps = 70/300 (23%)
Query: 1893 PENSCDPRAAICGFLDNNGKW-------IGGIFDKDSFVETLEGWARTVVTGRARLGGIP 1945
P N P + + +GK I I D ++E G+A +VT AR+ G
Sbjct: 9 PNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRS 68
Query: 1946 VGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFI 2005
VGIVA + + +++ K A+ + + +PL
Sbjct: 69 VGIVANQPSVMS---------------------GCLDINASDKAAEFVNFCDSFNIPLVQ 107
Query: 2006 LANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINS 2065
L + GF G + + GI++ G+ ++ P + + G + + + +
Sbjct: 108 LVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVV-LRKAYGGSYLAMCNRDLGA 166
Query: 2066 DHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAM 2125
D + + A+ V+ EG + + +
Sbjct: 167 DAVYAWPS--AEIAVMGAEGAANV------------------------IFRKEIKAADDP 200
Query: 2126 VESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2185
++I+ + +T AA+G + +V+D +R L
Sbjct: 201 DAMRAEKIEEYQNAF---------------NTPYVAAARGQVDDVIDPADTRRKIASALE 245
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 60.9 bits (146), Expect = 2e-10
Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 23/198 (11%)
Query: 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232
K+ S L+ Q A +P PW V + + + +++ +A +G P
Sbjct: 1 KLRSKLLWQGAGLPVAPW-------------VALTRAEFEKG---LSDKQLAEISALGLP 44
Query: 233 AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQY 292
++K S G G+ KV ++ ++ + +++ V +L ++
Sbjct: 45 VIVKPSREGSSVGMSKVVAENALQDALRLAF---QHDEEVLIEKWLSGPEFTVAILGEEI 101
Query: 293 GNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK---KLEQAARRLAKCVNYVGAATVE 349
+ + + +E L+ + + G ++
Sbjct: 102 LPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 161
Query: 350 YLYSMETGEYYFLELNPR 367
+ G++Y LE N
Sbjct: 162 VMLD-SDGQFYLLEANTS 178
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 55.0 bits (131), Expect = 2e-08
Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 34/208 (16%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK + + + + + + PES +G
Sbjct: 1 DKALTKELLTVNGIRNTKY----IVVDPES---------------ANNWSWDKIVAELGN 41
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ 291
+KA+ G GI +V N +E I ++ LEV ++ +
Sbjct: 42 IVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGAR--ELEVGVIGND 99
Query: 292 YGNVAALHSRDCSVQRRHQKIIEEGPITVAPL------------ETVKKLEQAARRLAKC 339
V+ + + Q + V E K+++Q A K
Sbjct: 100 QPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKV 159
Query: 340 VNYVGAATVEYLYSMETGEYYFLELNPR 367
+N G A +++L E Y E N
Sbjct: 160 LNLRGEARMDFLLD-ENNVPYLGEPNTL 186
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Score = 54.4 bits (130), Expect = 5e-08
Identities = 45/272 (16%), Positives = 85/272 (31%), Gaps = 62/272 (22%)
Query: 1914 IGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERV 1973
I + D F ET +A ++TG R+ G PVGIVA +
Sbjct: 35 IEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPM------------------- 75
Query: 1974 VPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN 2033
Q ++ K A+ + + +P+ + GF G +GI++ G+ ++
Sbjct: 76 --QFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFA 133
Query: 2034 LRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2093
P+ I G V+ + +D + TA+ V+ +G + I
Sbjct: 134 YAEATVPLITVI-TRKAFGGAYDVMGSKHLGADLNLAWP--TAQIAVMGAQGAVNILH-- 188
Query: 2094 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAE 2153
++ I T ++ ++ +
Sbjct: 189 ------------------------------------RRTIADAGDDAEATRARLIQEYED 212
Query: 2154 LHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2185
A +G + V+ +R R LR
Sbjct: 213 ALLNPYTAAERGYVDAVIMPSDTRRHIVRGLR 244
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Score = 48.3 bits (115), Expect = 2e-07
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAM 745
++ A + + LV +G + A +E MKM + +P G + + + E A+
Sbjct: 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAV 67
Query: 746 QAGELIARL 754
Q G+ + ++
Sbjct: 68 QGGQGLIKI 76
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.8 bits (118), Expect = 1e-06
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 1759 GVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-IILTGF 1817
GV +L I A ++ + G G Y L I + +TG
Sbjct: 141 GVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGP 200
Query: 1818 SALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871
+ + G EV + +LGG MA +G H S + + + + LSY+PP+
Sbjct: 201 DVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPPN 253
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (110), Expect = 1e-06
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+ + V +G + EV+ K + + S GV+ + G+ +
Sbjct: 17 REVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLV 76
Query: 753 RLDLDDPS 760
++ +
Sbjct: 77 DIETEALK 84
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 45.9 bits (109), Expect = 1e-06
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+++++ V G ++ D EV+ K + + SP G + + + EG G+ +
Sbjct: 14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLI 73
Query: 753 RLD 755
LD
Sbjct: 74 TLD 76
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Score = 45.5 bits (108), Expect = 2e-06
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+ + G + D E+E K+ + + + A G+L EG + + +++
Sbjct: 15 ADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILG 74
Query: 753 RLDLDD 758
RL +
Sbjct: 75 RLREGN 80
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Score = 49.6 bits (117), Expect = 2e-06
Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 47/233 (20%)
Query: 1638 FPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1697
+G+ ++VA+D AG++ P + L +D A +PL+Y+ SG + E+V
Sbjct: 100 RVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKV 159
Query: 1698 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDG 1757
G T +L +V
Sbjct: 160 YPNRRGGGT-------------------------PFFRNAELNQLGIPVIVG-------- 186
Query: 1758 LGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1817
+ G+ G Y T + + + G+ + L
Sbjct: 187 -----IYGTNPAGGGYHS-ISPTVIIAHEKAN-----MAVGGAGIMGGMNPKGHVDLEYA 235
Query: 1818 SALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVP 1869
+ + ++ R + G I G + + + + I K++ +P
Sbjct: 236 NEIADMVDRTGKTE--PPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGMLP 286
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Score = 46.4 bits (109), Expect = 2e-05
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 1753 GKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI 1812
G G+++L+G G + A + + + G G +Y L I +
Sbjct: 135 GARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHM 194
Query: 1813 ILTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVP 1869
+TG + + G +V + +LGG + MA +G +H DD K LS++P
Sbjct: 195 FITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP 250
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 28/204 (13%), Positives = 61/204 (29%), Gaps = 34/204 (16%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK + ++A+ A + T + ++ Y
Sbjct: 1 DKSLTYIVAKNAGIATPAF-------------------------WVINKDDRPVAATFTY 35
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ 291
P +K + G G++KV++ DE+ + + I + +
Sbjct: 36 PVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAAL 95
Query: 292 YGNVAALHSRDCSVQRRHQKIIEEGPITVA--------PLETVKKLEQAARRLAKCVNYV 343
+ R HQ++ E A E ++++ +++ K +
Sbjct: 96 VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCR 155
Query: 344 GAATVEYLYSMETGEYYFLELNPR 367
G A V+ + G E+N
Sbjct: 156 GLARVDMFLQ-DNGRIVLNEVNTL 178
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Score = 39.4 bits (92), Expect = 2e-04
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+ + G + D ++E K+ M +L+ A GV+ + EG + +GEL+
Sbjct: 14 ADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLG 73
Query: 753 RLD 755
+L
Sbjct: 74 KLT 76
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 16/175 (9%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSPIF 272
E A+A + G P +IKA GKG+ +E A +
Sbjct: 22 FTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRI 81
Query: 273 IMKVASQSRHLEVQLLCDQYGNV------AALHSRDCSVQRRHQKIIEEGPI-TVAPLET 325
+++ ++ D + D + P V
Sbjct: 82 VIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVH 141
Query: 326 VKKLEQAARRLAKCVNYVGAATVEYLYS----METGEYYFLELNPRLQVEHPVTE 376
+ +E+ K + G +LY+ + G +E N R T+
Sbjct: 142 QRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFG--DLETQ 194
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Score = 42.1 bits (98), Expect = 4e-04
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 1759 GVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGF 1817
GV +L G I + A ++ V G G Y A + + +TG
Sbjct: 140 GVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP 199
Query: 1818 SALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871
+ + G +V +LGG + +T+GV H D+ + + + + LSY+P +
Sbjct: 200 DVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSN 252
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Score = 38.7 bits (90), Expect = 4e-04
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+++ LV G I+ + +E K M + SP +GV+ + G ++ G+ I
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAII 70
Query: 753 RLDLDDPS 760
L+ +
Sbjct: 71 ELEPAAGA 78
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Score = 41.6 bits (96), Expect = 5e-04
Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 16/177 (9%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
T EE + P +IKA GKG+ + + +E ++ +
Sbjct: 22 AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPV 81
Query: 276 VASQSRHLEVQLLCDQYGNVAALHS-----------RDCSVQRRHQKIIEEGPITVAPLE 324
V + + D I ++
Sbjct: 82 VIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIK 141
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL-----QVEHPVTE 376
+++L + Y + + G+ Y LE N RL +V +
Sbjct: 142 KIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIVTLNP 198
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Score = 41.3 bits (96), Expect = 8e-04
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 2/114 (1%)
Query: 1759 GVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1818
GV+ L G G I + A +T + G G Y L + +
Sbjct: 138 GVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGP 197
Query: 1819 ALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871
+ K + E S LGG + +G H +D + +S + LSY+P +
Sbjct: 198 NVIKAVTGEEISQE-DLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLPSN 250
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (86), Expect = 0.002
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAGE 749
TP + + G ++ VE MKM + + SG V + GQ ++ E
Sbjct: 15 FYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDE 74
Query: 750 LIARLD 755
+ ++
Sbjct: 75 PLVVIE 80
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2304 | |||
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 100.0 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 100.0 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 100.0 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 100.0 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 100.0 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 100.0 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 100.0 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.97 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.97 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 99.97 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 99.97 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.97 | |
| d1w96a2 | 170 | Acetyl-CoA carboxylase, BC-N subdomain {Baker's ye | 99.96 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 99.96 | |
| d1w96a1 | 116 | Acetyl-CoA carboxylase, BC-C subdomain {Baker's ye | 99.95 | |
| d2j9ga1 | 116 | Biotin carboxylase (BC), C-domain {Escherichia col | 99.94 | |
| d1ulza1 | 123 | Biotin carboxylase (BC), C-domain {Aquifex aeolicu | 99.94 | |
| d2j9ga2 | 114 | Biotin carboxylase (BC), N-terminal domain {Escher | 99.93 | |
| d1ulza2 | 114 | Biotin carboxylase (BC), N-terminal domain {Aquife | 99.92 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.92 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 99.92 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 99.89 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.88 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.86 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.85 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.85 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 99.83 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.82 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.8 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.78 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 99.75 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.7 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 99.63 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.62 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 99.6 | |
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.58 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 99.57 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.55 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.54 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.48 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.36 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.3 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 99.3 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.29 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.21 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.16 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.14 | |
| d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.12 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.09 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.05 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 98.88 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 98.86 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 98.77 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 98.57 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 98.31 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.28 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 97.93 | |
| d2nu7b2 | 238 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 97.91 | |
| d2pbza2 | 213 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 97.58 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 97.42 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 97.13 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 95.63 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 95.36 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 95.29 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 95.29 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 95.1 | |
| d1onla_ | 127 | Protein H of glycine cleavage system {Thermus ther | 94.71 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 94.67 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 94.54 | |
| d1hpca_ | 131 | Protein H of glycine cleavage system {Pea (Pisum s | 94.49 | |
| d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomo | 94.42 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 94.04 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 94.03 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 93.75 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 93.55 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.53 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 93.45 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 93.04 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 93.02 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 92.67 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 92.49 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 92.47 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 92.12 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 92.02 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 91.55 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 91.48 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 90.92 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 90.75 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 90.72 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 90.09 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 89.85 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 89.81 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 89.4 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 88.95 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 88.18 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 88.04 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 87.95 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 87.95 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 87.88 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 87.29 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 86.8 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 85.36 | |
| d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomo | 85.2 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 84.06 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 82.57 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 81.04 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 80.92 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 80.7 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 80.3 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 80.17 |
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.7e-90 Score=827.45 Aligned_cols=398 Identities=45% Similarity=0.787 Sum_probs=346.3
Q ss_pred CCCCcCCCCCCCCCCCccccC--CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEE
Q 000086 1874 GALPIISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAV 1951 (2304)
Q Consensus 1874 ~~~p~~~~~d~~~r~~~~~P~--~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~ 1951 (2304)
.|.|+.++.||+||+++++|+ ++||||++|+++.+.++ |++||||+|||+|++++||+++|||+|||||+|||||||
T Consensus 2 ~P~Pi~~~~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~-~~~~i~D~~sF~E~~~~~a~svVtG~ARL~G~PVGVIAn 80 (404)
T d1uyra2 2 MPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGV 80 (404)
T ss_dssp SCCCCCCCSSCSSSCCCCCCCSSSCCCHHHHHHCEEETTE-EECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCCCcccccccCCCCCCCCCHHHHHhcCccccc-cccccccCCceeehhhccCCceEEEEEEECCEEEEEEEe
Confidence 467899999999999999999 79999999999888776 999999999999999999999999999999999999999
Q ss_pred ecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHH-HhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHH
Q 000086 1952 ETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALM-DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTI 2030 (2304)
Q Consensus 1952 e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~-~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~i 2030 (2304)
++++++..+||||||++|.+++++++||+|+|++|+|+||||. +|++|+||||+|+|||||++|+++|++|++++||++
T Consensus 81 e~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~i 160 (404)
T d1uyra2 81 ETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI 160 (404)
T ss_dssp CCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHH
T ss_pred CcccccCCccCCcccccchhhhhhccCCccCchHHHHHHHHHHHhhhccccceEEeecCCcccCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996 789999999999999999999999999999999999
Q ss_pred HHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHH
Q 000086 2031 VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDL 2110 (2304)
Q Consensus 2031 v~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l 2110 (2304)
++++++++||+|+||+|.|+++||||+|+++++|++.|+|||||+|++|||+|||+|+|+||++++.++|+|+|+++.+|
T Consensus 161 v~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el 240 (404)
T d1uyra2 161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYREL 240 (404)
T ss_dssp HHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-------
T ss_pred HHHHHhcCCCEEEEEeCCcccchhhhhcccCccCCccceEEECCccccccCChhhhhhheecchhhhcchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHHHHH
Q 000086 2111 MAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAE 2190 (2304)
Q Consensus 2111 ~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~l~e 2190 (2304)
++++.+. ..++++.++++++|++||++|+|+|+|+|.+|||||||++||+++|+||+||+|++||+||||||||||+|
T Consensus 241 ~~~l~~~--~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~w~~tR~~~~~~lrr~l~e 318 (404)
T d1uyra2 241 RSQLSNK--SLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNE 318 (404)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCc--ccCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHhcCccccccCHHHhHHHHHHHHHHHHhH
Confidence 9999887 56678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHhhhccccccccCCCccCchhHHHhhc-CchHHHHHHHHHhHHHHHHHHHHhccc
Q 000086 2191 SSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-DSRNYEKKVQELGVQKVLLQLTNIGNS 2269 (2304)
Q Consensus 2191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2269 (2304)
+.++++|.++++ .+++.+++++|++||.++ ..|+||++|++|+| |.+.++++|++||.+++.++|.+++++
T Consensus 319 ~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~-------~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (404)
T d1uyra2 319 EYLIKRLSHQVG-EASRLEKIARIRSWYPAS-------VDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRS 390 (404)
T ss_dssp HHHHHTTTTCCS-SCCHHHHHHHHHTTSCTT-------SCTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHHHhc-------cCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998 579999999999999753 35999999999998 889999999999999999999999999
Q ss_pred CCcccchHHHHHHHH
Q 000086 2270 TSDLQALPQGLATLL 2284 (2304)
Q Consensus 2270 ~~~~~~~~~~~~~~~ 2284 (2304)
+ ++.+++ |+.++|
T Consensus 391 ~-~~~~~~-~~~~~~ 403 (404)
T d1uyra2 391 D-HDNAID-GLSEVI 403 (404)
T ss_dssp T-HHHHHH-HHHTCC
T ss_pred C-cHHHHH-HHHHHh
Confidence 8 888884 887765
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-82 Score=754.20 Aligned_cols=328 Identities=52% Similarity=0.846 Sum_probs=315.9
Q ss_pred cccccccCchhhhhhhhhcccCCccccccCCCCCCCccccCCCcccchhhhhcccCccCCCCcchhHHHHHHHHHHHhHh
Q 000086 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLVSTLASTCCNIRSFFFSSFNLSISDCKSCSCEKCYLQAFETALEQSWA 1580 (2304)
Q Consensus 1501 ~~~~pY~~~~~~~~kr~~a~~~~t~y~yd~p~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1580 (2304)
|+++|||++|+||+||++||.+||||+||||+ ||+++++.+|+
T Consensus 1 p~~~py~~~d~L~~KR~~A~~~gttY~yD~p~-------------------------------------lf~~a~~~~w~ 43 (333)
T d1uyra1 1 PIATPYPVKEWLQPKRYKAHLMGTTYVYDFPE-------------------------------------LFRQASSSQWK 43 (333)
T ss_dssp CCSCSSCCHHHHSHHHHHHHHTTSCCGGGHHH-------------------------------------HHHHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHHHCCCeEecchHH-------------------------------------HHHHHHHHHHH
Confidence 78999999999999999999999999999999 99999999999
Q ss_pred hhCCCCCCCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcch
Q 000086 1581 SQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGP 1660 (2304)
Q Consensus 1581 ~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~ 1660 (2304)
+... ....+.++++++||+||+ ++ .|.|++|.+|.|++|||+|.++++|||||+||+|+|+|||+||++||||+
T Consensus 44 ~~~~-~~~~~~~~~~~~El~ld~-~~----~l~e~~r~~G~n~~gmV~g~~~i~t~eyp~GR~vvvianD~T~~~GS~g~ 117 (333)
T d1uyra1 44 NFSA-DVKLTDDFFISNELIEDE-NG----ELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGP 117 (333)
T ss_dssp HHCT-TCCCCGGGEEEEEEEECT-TS----CEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSGGGCBCH
T ss_pred hcCC-CccCccccceeccceecC-CC----ceeeccccCCCCCCCeEeEEEEEcCCcCCCCcEEEEEEECCceecCccCH
Confidence 8753 345667899999999998 77 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhc-----cceeee
Q 000086 1661 REDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG-----SSVIAH 1735 (2304)
Q Consensus 1661 ~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~-----~~v~~~ 1735 (2304)
.+++||.+++++|+++|+|+|||++||||||+++++++++|+|+|+|+.+|++||+|||+++++|+++. .+++++
T Consensus 118 ~e~~k~~~a~elA~~~~iP~I~l~~~sGARi~~~~~~~~~~~v~~~~~~~p~~G~~ylyl~~~~~~~~~~~~~~~~v~~~ 197 (333)
T d1uyra1 118 QEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTE 197 (333)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccccccccCCCCCcccCcceeecCHHHHHhhhhcccccceeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999983 457777
Q ss_pred ccccccCceeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEec
Q 000086 1736 EMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT 1815 (2304)
Q Consensus 1736 ~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt 1815 (2304)
.+. ++||.||+|++|+|+++|+|||||+|||.|||++|+||.+|||||+|||||+|||||+++||||+||+++++||||
T Consensus 198 ~~~-~~ge~~~~i~~i~G~~~g~GVe~L~g~g~ia~~~s~a~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt 276 (333)
T d1uyra1 198 RTV-INGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT 276 (333)
T ss_dssp EEE-ETTEEEEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS
T ss_pred eec-cCCceeeeeccccccccCCCcchhHHHHHHHHHHHHhcCCCCEEEEEeCCccccceeecccccEEEEeCCceEEee
Confidence 777 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhcccccccccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCCC
Q 000086 1816 GFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1872 (2304)
Q Consensus 1816 G~~al~~~lG~~vy~s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~ 1872 (2304)
||++||+++|++||+||+||||++||++||++|++|+||+|+++.|++||||||+++
T Consensus 277 Gp~~l~~~lG~eVy~s~~eLGG~~i~~~nGv~h~~a~dd~eai~~i~~~LSylP~~~ 333 (333)
T d1uyra1 277 GAPAINKMLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKR 333 (333)
T ss_dssp CHHHHHHHSSSCCCSCTHHHHSHHHHHHHTSSSEEESSHHHHHHHHHHHHTTSCSST
T ss_pred CHHHHHHhcCccccCChhHhCCHhHHhhCCCceEEeCCHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999853
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=100.00 E-value=4.1e-43 Score=410.33 Aligned_cols=238 Identities=22% Similarity=0.343 Sum_probs=198.1
Q ss_pred CCCcCCCCCCCC---CCCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEE
Q 000086 1875 ALPIISPLDPPD---RPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGI 1948 (2304)
Q Consensus 1875 ~~p~~~~~d~~~---r~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGV 1948 (2304)
.+|..+|.|+.+ +..+++|. ++||+|++|++ |||++||+|++++||+++|||+|||+|+||||
T Consensus 3 ~~~~~~p~~~~~~~~~l~~iip~~~~~~yd~r~~i~~-----------~~D~~~f~E~~~~~g~~~vtg~ari~G~~vgv 71 (264)
T d1on3a2 3 EASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAK-----------IVDWGDYLEVKAGYATNLVTAFARVNGRSVGI 71 (264)
T ss_dssp CCCCCSCCCCCCCCGGGGGTSCSSTTCCCCTHHHHHH-----------HSGGGCEEEESTTSSTTEEEEEEEETTEEEEE
T ss_pred CCCCCCCCCCCCChHHHHhcCCCCCCCCCCHHHHHHH-----------hccCceeeeecCCCcCCEEEEEEEEecceEEE
Confidence 345555555543 34678998 89999999997 89999999999999999999999999999999
Q ss_pred EEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHH
Q 000086 1949 VAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGS 2028 (2304)
Q Consensus 1949 iA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga 2028 (2304)
|||++.+ .||+|++++|+|++|||++|++++||||+|+||+||++|.++|+.|++++||
T Consensus 72 ian~~~~---------------------~~G~~~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~g~i~~ga 130 (264)
T d1on3a2 72 VANQPSV---------------------MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGA 130 (264)
T ss_dssp EEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHH
T ss_pred Eeccchh---------------------cccccChHHHHHHHHHHHHHHhcCCceEEEeccccccccHHHHHHHHHHHHH
Confidence 9996543 3899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEcCCCcCCchhhhhcc-cccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHH
Q 000086 2029 TIVENLRTYKQPVFVYIPMMAELRGGAWVVVD-SRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKL 2107 (2304)
Q Consensus 2029 ~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~-~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~ 2107 (2304)
+++.|+++++||+|++|+ ++++||++.+|+ +.+++|+ +||||+|++|||+|||+|.|.||++.
T Consensus 131 ~~~~a~a~~~vP~itvi~--rkayG~g~~am~g~~~~~d~--~~aWP~A~~~vMg~Egaa~v~~~~el------------ 194 (264)
T d1on3a2 131 KMLYAYSEATVPKITVVL--RKAYGGSYLAMCNRDLGADA--VYAWPSAEIAVMGAEGAANVIFRKEI------------ 194 (264)
T ss_dssp HHHHHHHHCCSCEEEEEE--EEEEHHHHHTTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHH------------
T ss_pred HHHHHHHcCCCCEEEEEe--ccccCccccccccccCChhh--eeeHHhhHhhhccHHHHHHHHHhhhh------------
Confidence 999999999999999999 455776655555 5599999 99999999999999999999999761
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHHH
Q 000086 2108 IDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2187 (2304)
Q Consensus 2108 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r~ 2187 (2304)
+.. .+++. ...+++ .+|.+...+|...++.|.||+||+|++||+++...|+--
T Consensus 195 -------~a~---~~~~~--~~~~~~---------------~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~ 247 (264)
T d1on3a2 195 -------KAA---DDPDA--MRAEKI---------------EEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMY 247 (264)
T ss_dssp -------HHS---SCHHH--HHHHHH---------------HHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHG
T ss_pred -------hhh---hhhhh--hhHHHH---------------HHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence 111 11111 111112 223334456778999999999999999999999888743
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.3e-43 Score=409.11 Aligned_cols=237 Identities=23% Similarity=0.375 Sum_probs=200.4
Q ss_pred CCCCcCCCCCCCCC---CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEE
Q 000086 1874 GALPIISPLDPPDR---PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVG 1947 (2304)
Q Consensus 1874 ~~~p~~~~~d~~~r---~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVG 1947 (2304)
+.||+.++.||.++ ..+++|. ++||+|++|++ |+|+++|+|+++.||+++|||+|||+|+|||
T Consensus 2 e~pp~~~~~~p~~~~~~l~~~iP~~~~~~yd~r~~i~~-----------i~D~~~~~E~~~~~~~~~v~g~~r~~G~~vg 70 (264)
T d1vrga2 2 EEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVIKR-----------VVDHGEFFEVQPYFAKNIVIGFARIQGKTVG 70 (264)
T ss_dssp SCCCBCSCCCCCCCCGGGGGSSCSSTTSCCCTHHHHHH-----------HSGGGCCEEESTTSSTTEEEEEEEETTEEEE
T ss_pred CCCCCCCCCCcccChHHHhccCCCCCCCCCcHHHHHHH-----------hCcCceeeeecCCCCCCeEEEEEEecCceEE
Confidence 34666655555444 3467998 99999999998 7999999999999999999999999999999
Q ss_pred EEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHH
Q 000086 1948 IVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAG 2027 (2304)
Q Consensus 1948 ViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~g 2027 (2304)
||||++. +.||+|++++++|++|||++|++++||||+|+||+||++|.++|+.|++++|
T Consensus 71 vian~~~---------------------~~~G~~~~~~a~Kaa~fi~lc~~~~iPli~l~DtpGf~~G~~~E~~g~~~~g 129 (264)
T d1vrga2 71 IVANQPS---------------------VLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHG 129 (264)
T ss_dssp EEEECTT---------------------SGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHH
T ss_pred EEecccc---------------------ccccchhhhhHHHHHHHHHHHHHhCCceEEEeecccccccHHHHHHhHHHHH
Confidence 9999654 3489999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHH
Q 000086 2028 STIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQK 2106 (2304)
Q Consensus 2028 a~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~ 2106 (2304)
|+++.++++++||+|++|+ |+++||+|.+|++. +++|+ +||||+|++|||+||++++|.|+++.
T Consensus 130 a~~~~a~a~~~vP~i~vii--r~~yG~g~~am~~~~~~~d~--~~awP~a~~~vm~pe~aa~v~~~~~l----------- 194 (264)
T d1vrga2 130 AKLLYAYSEATVPKITVIL--RKAYGGAYIAMGSKHLGADM--VLAWPSAEIAVMGPEGAANIIFKREI----------- 194 (264)
T ss_dssp HHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHH-----------
T ss_pred HHHHHHHhcCCCCEEEEEe--CCcccHHhhhccCCccCCCe--eeeccceeEEecCHHHhhhhhhhhhh-----------
Confidence 9999999999999999999 67788888777654 89999 99999999999999999999998761
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHH
Q 000086 2107 LIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2185 (2304)
Q Consensus 2107 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~ 2185 (2304)
+.. .++++ .++++ ..++.+...+|.+++++|.||+||+|++||++|..+|+
T Consensus 195 --------~~~---~~~~~---~~~~~--------------~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le 245 (264)
T d1vrga2 195 --------EAS---SNPEE---TRRKL--------------IEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALE 245 (264)
T ss_dssp --------HHS---SCHHH---HHHHH--------------HHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred --------hhh---hCcHH---HHHHH--------------HHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHH
Confidence 111 11111 11111 11233444568899999999999999999999998885
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=100.00 E-value=9.7e-43 Score=413.28 Aligned_cols=267 Identities=19% Similarity=0.241 Sum_probs=214.6
Q ss_pred cCCCCCCCCCCcCCCCCCCCCCCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECC
Q 000086 1867 YVPPHIGGALPIISPLDPPDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGG 1943 (2304)
Q Consensus 1867 ylP~~~~~~~p~~~~~d~~~r~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G 1943 (2304)
|+|.......|. +|.+++++..+++|. ++||+|++|+. |+|+|||+|+++.||+++|||+|||+|
T Consensus 1 y~p~~~~~~~p~-~p~~~~~~l~~iiP~~~~~~yd~r~iI~~-----------l~D~~~f~E~~~~~g~~~vtg~ari~G 68 (299)
T d1pixa3 1 YDPEFFRVDDPK-APAFPADDLYSMVPLNDKRAYDIYNVIAR-----------LFDNSELHEYKKGYGPEMVTGLAKVNG 68 (299)
T ss_dssp CCGGGGBSSCCC-CCSSCGGGHHHHSCSSTTSCCCHHHHHHT-----------TSGGGBCEESSTTSSTTEEEEEEEETT
T ss_pred CCCCCCCCCCCC-CCCCCHHHHHhhCCCCCCCCCCHHHHHHH-----------hccCCEeEEeccccCCceEEEEEEECC
Confidence 677766655554 555667777889999 89999999998 799999999999999999999999999
Q ss_pred eEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhH
Q 000086 1944 IPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGI 2023 (2304)
Q Consensus 1944 ~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gi 2023 (2304)
+|||||||+++++......+.+++ .+.||+|++++++|++|||++|++++||||+|+||+||++|.++|..|+
T Consensus 69 ~~vgviAn~~~~~~~~~~~~a~~~-------~~~~G~l~~~~a~K~~rfi~lc~~~~iPlv~l~D~pGf~~g~~~E~~g~ 141 (299)
T d1pixa3 69 LLVGVVANVQGLLMNYPEYKAAGS-------VGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAEL 141 (299)
T ss_dssp EEEEEEEECCSEETTCCTTSCTTC-------CEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTH
T ss_pred eEEEEEeecCccccccccccccCC-------cCCCCccCHHHHHHHHHHHHHHHHcCCeEEEEEeCCCcccchHHHhhhH
Confidence 999999999888755444444443 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhc-ccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhc
Q 000086 2024 LQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV-DSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGR 2102 (2304)
Q Consensus 2024 lk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~-~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r 2102 (2304)
+++|++++.++++++||+|++|+ |.++||++.+| ++..+++++.+++||++++|||+||++|.+.|+++..
T Consensus 142 ~r~ga~~~~a~~~~~VP~isvi~--r~~~G~a~~am~g~~~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~------ 213 (299)
T d1pixa3 142 LGLGQSLIYSIQTSHIPQFEITL--RKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYSRRLA------ 213 (299)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEC--SEEETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhhcceeEEEEe--cccccccccccccCccCcccceecCCCccccccccchhhheeehhhhhh------
Confidence 99999999999999999999999 45567665555 5558889866789999999999999999999987611
Q ss_pred chHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHH
Q 000086 2103 LDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCR 2182 (2304)
Q Consensus 2103 ~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~ 2182 (2304)
+..+.+.. .++.++..+++ ..+|.+. .+|.++++.|.||+||+|++||++|+.
T Consensus 214 ----------~~~~~~~~--~~e~~e~~~~~--------------~~~~~~~-~sp~~aAs~~~iD~IIDP~dTR~~L~~ 266 (299)
T d1pixa3 214 ----------KDRKAGKD--LQPTIDKMNNL--------------IQAFYTK-SRPKVCAELGLVDEIVDMNKIRGYVEA 266 (299)
T ss_dssp ----------HHHHTTCC--CHHHHHHHHHH--------------HHHHHHT-TSHHHHHHHTSSSEECCTTTHHHHHHH
T ss_pred ----------hhhhhhhh--hhHHHHHHHHH--------------HHHHHHh-cCHHHHHHhCCcCeeECHHHHHHHHHH
Confidence 11122111 12222211111 1222222 357889999999999999999999998
Q ss_pred HHHHH
Q 000086 2183 RLRRR 2187 (2304)
Q Consensus 2183 ~L~r~ 2187 (2304)
+|+--
T Consensus 267 ~Le~~ 271 (299)
T d1pixa3 267 FTEAA 271 (299)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88743
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.7e-42 Score=405.52 Aligned_cols=241 Identities=22% Similarity=0.354 Sum_probs=198.0
Q ss_pred CCCCcCCCCCCCCC----CCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEE
Q 000086 1874 GALPIISPLDPPDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPV 1946 (2304)
Q Consensus 1874 ~~~p~~~~~d~~~r----~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pV 1946 (2304)
++.|..+..|++.+ ...++|. ++||+|++|++ ++| +||+|++++||+++|||+|||+|+||
T Consensus 5 ~~~p~~~~~~~~~~~~~~l~~~ip~~~~~~yd~r~~i~~-----------i~D-~sf~E~~~~~g~~~itg~ari~G~~v 72 (271)
T d2a7sa2 5 AAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITR-----------LLD-DEFLEIQAGYAQNIVVGFGRIDGRPV 72 (271)
T ss_dssp CCCCCSCGGGSCCHHHHTTTTTSCSSSSCCCCTHHHHHH-----------HSS-SCCEEESTTSCTTEEEEEEESSSCEE
T ss_pred CCCCCCCCCCCCCcchhHHhhcCCCCCCCCCCHHHHHHH-----------HhC-CcchhhccccccceeEEEEEECCeEE
Confidence 34455444444332 4568997 89999999998 799 69999999999999999999999999
Q ss_pred EEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHH
Q 000086 1947 GIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA 2026 (2304)
Q Consensus 1947 GViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ 2026 (2304)
|||||++. +.||+|++++++|++|||++|++++||||+|+||+||++|.++|..|++++
T Consensus 73 gvian~~~---------------------~~~G~~~~~~~~Ka~rfi~lc~~~~iPlv~l~dtpGf~~G~~~E~~g~~~~ 131 (271)
T d2a7sa2 73 GIVANQPT---------------------HFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRR 131 (271)
T ss_dssp EEEEECTT---------------------TGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHHCHHHH
T ss_pred EEEecccc---------------------ccCCCcCHHHHHHHHHHHHHHHHhCCceEEeechhhhhhhccHHHhhHHHH
Confidence 99999654 348999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccc-cCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchH
Q 000086 2027 GSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2105 (2304)
Q Consensus 2027 ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~-i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~ 2105 (2304)
||+++.++++++||+|++|+ ++++||+|.+|++. +++|+ +||||+|++|||+|||+|.|.||++....
T Consensus 132 ga~~~~a~a~~~vP~isvi~--~~~~G~~~~am~~~~~~~d~--~~AwP~A~igvMgpegaa~v~~~~~l~~~------- 200 (271)
T d2a7sa2 132 GAKLLYAYGEATVPKITVIT--RKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASGAVGFVYRQQLAEA------- 200 (271)
T ss_dssp HHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTTTTTTGG-------
T ss_pred HHHHHHHHHhCCCCeEEEEe--CCccchhhhhhcccccccce--EEEecceeEeecCHHHHHHHHHHHhhhhh-------
Confidence 99999999999999999999 56788888877664 89999 99999999999999999999999762110
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHH
Q 000086 2106 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2185 (2304)
Q Consensus 2106 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~ 2185 (2304)
...+... ++++ .+...+|.+...+|..+.++|.||+||+|++||++|+++|+
T Consensus 201 ---------~~~~~~~-----~~~~--------------~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L~ 252 (271)
T d2a7sa2 201 ---------AANGEDI-----DKLR--------------LRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALR 252 (271)
T ss_dssp ---------GTSSCCT-----TSST--------------THHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHHH
T ss_pred ---------hhcccch-----HHHH--------------HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHH
Confidence 0000000 0111 11122344444567789999999999999999999999985
Q ss_pred H
Q 000086 2186 R 2186 (2304)
Q Consensus 2186 r 2186 (2304)
-
T Consensus 253 ~ 253 (271)
T d2a7sa2 253 L 253 (271)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=6.3e-42 Score=400.07 Aligned_cols=226 Identities=23% Similarity=0.331 Sum_probs=191.9
Q ss_pred CCCccccC---CCCChHHHhhcccCCCCCcccccccCCCceecccCCCCeEEEEEEEECCeEEEEEEEecceeeccccCC
Q 000086 1887 RPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1963 (2304)
Q Consensus 1887 r~~~~~P~---~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~a~~vVtG~arl~G~pVGViA~e~~~~~~~~pad 1963 (2304)
+..+++|+ ++||+|++|++ |+|.+||+|+++.||+++|||+|||+|+|||||||++.
T Consensus 16 ~l~~iip~~~~~~yD~r~~i~~-----------~~D~~~f~E~~~~~g~~vitg~ari~G~~vgvia~~~~--------- 75 (263)
T d1xnya2 16 ELDTIVPDSANQPYDMHSVIEH-----------VLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPM--------- 75 (263)
T ss_dssp HGGGTSCSSSSSCCCHHHHHHH-----------HSGGGCCEEESTTSCTTEEEEEEEETTEEEEEEEECTT---------
T ss_pred HHHhcCCCCCCCCCCHHHHHHH-----------hCCCCEEEeeccccCCcEEeeeeeeccceEEEEecccc---------
Confidence 45678898 89999999998 89999999999999999999999999999999999654
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1964 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1964 pa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
+.||++++++++|++|||++|++++||||+|+||+||++|.++|..|++++||++++++++++||+|+
T Consensus 76 ------------~~~G~~~~~~a~Ka~~fi~lc~~~~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkit 143 (263)
T d1xnya2 76 ------------QFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLIT 143 (263)
T ss_dssp ------------TGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred ------------eecCCcchhhHHHHHHHHHHHHHhCCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcCCchhhhhccc-ccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCC
Q 000086 2044 YIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRT 2122 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~-~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~ 2122 (2304)
+|+ ++.+||+|.+|++ .+++|+ ++|||+|++|||+||+++.|.||++. +++.....
T Consensus 144 vi~--~~~~Gga~~~m~~~~~~~d~--~~awP~a~~gvm~pe~aa~il~~~~~-------------------~~a~~~~~ 200 (263)
T d1xnya2 144 VIT--RKAFGGAYDVMGSKHLGADL--NLAWPTAQIAVMGAQGAVNILHRRTI-------------------ADAGDDAE 200 (263)
T ss_dssp EEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHH-------------------HSCCTTCS
T ss_pred EEe--cCccccceeccCCcccCCcE--EEEcchhhhhccCHHHHHHHHHHHHH-------------------hhhccchH
Confidence 999 4557777776654 589998 99999999999999999999998651 11100000
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHHHHHHHHH
Q 000086 2123 LAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRR 2186 (2304)
Q Consensus 2123 ~~~~~~~~~~~~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~~~~~L~r 2186 (2304)
. .+. +. ..+|.+.+.+|.++++.|.||+||+|++||++|...|+.
T Consensus 201 ~-~~~---~~---------------~~~~~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~ 245 (263)
T d1xnya2 201 A-TRA---RL---------------IQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQ 245 (263)
T ss_dssp S-SHH---HH---------------HHHHHHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHH
T ss_pred H-HHH---HH---------------HHHHHHHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHH
Confidence 0 011 11 112233445677899999999999999999999998875
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-38 Score=374.77 Aligned_cols=268 Identities=17% Similarity=0.242 Sum_probs=228.0
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..+|++|+++|||+|+|.. ++|.+|+.++++++||||||||+.|+||+|+++|++
T Consensus 1 Dr~~~r~~~~~~gip~~~~~~-----------------------~~~~~ea~~~~~~ig~PvviKp~~~~gg~G~~~v~~ 57 (275)
T d1a9xa5 1 DRRRFDVAMKKIGLETARSGI-----------------------AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYN 57 (275)
T ss_dssp SHHHHHHHHHHTTCCCCSEEE-----------------------ESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESS
T ss_pred CHHHHHHHHHHCCCCCCCceE-----------------------eCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeeC
Confidence 899999999999999999765 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEE--EeeccccccccccceEEEeCCCCCCCHHHHHHH
Q 000086 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVA--ALHSRDCSVQRRHQKIIEEGPITVAPLETVKKL 329 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi--~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m 329 (2304)
++||.++++++.....+.+++||+|+++++|++|++++|++|+.+ .+..++|+.|+++||.++.+|++.++++.+++|
T Consensus 58 ~~el~~~~~~a~~~~~~~~v~iEe~l~g~~e~~v~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~aP~~~L~~~~~~~i 137 (275)
T d1a9xa5 58 REEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIM 137 (275)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcEEEeeecCCchhheeeeEEecCCCEEEEEeeccccccCcccCceeEEcCCCcCCHHHHHHH
Confidence 999999999999888889999999999999999999999999854 677999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCce-eeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccc
Q 000086 330 EQAARRLAKCVNYV-GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGM 408 (2304)
Q Consensus 330 ~e~A~rlakalGy~-Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~ 408 (2304)
.+.|.++++++||. |.+++||+++++++++||+|+|||+|++|++++++||+||+++|+++++|.+++.+..
T Consensus 138 ~~~a~~i~~~lg~~~G~~~~ef~~~~~~~~~~~iE~npR~~~~~~~~~~~tgidlv~~~~~~a~G~~l~~~~~------- 210 (275)
T d1a9xa5 138 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMN------- 210 (275)
T ss_dssp HHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBC-------
T ss_pred HHHHHHHHHHcCceECceEEEEEEeCCCCEEEEEEecCCCCceehhhhHhhCCCHHHHHHHHHcCCCCccccc-------
Confidence 99999999999994 9999999999878999999999999999999999999999999999999999864210
Q ss_pred cCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccc----cccccCCCcEEEEEeeeeCCc
Q 000086 409 EHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ----ELSFKSKPNVWAYFSVKSGGG 484 (2304)
Q Consensus 409 ~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~----~l~~~s~~~V~~~~~v~~G~~ 484 (2304)
+. . .+.....+.|..+.+. .+.|... ...+..
T Consensus 211 -~~--------------~---------------------~~~~~~~~~~~~~~~~~k~~~~~~~~~--------~~~~~~ 246 (275)
T d1a9xa5 211 -DI--------------T---------------------GGRTPASFEPSIDYVVTKIPRFNFEKF--------AGANDR 246 (275)
T ss_dssp -TT--------------T---------------------TTCSBSCSCCBCSSEEEEEEECCGGGC--------TTSCCB
T ss_pred -cc--------------c---------------------cccCccccCCCCCcEecCccceecCCC--------CCCCCE
Confidence 00 0 0000011122222111 0111111 123456
Q ss_pred ccccCCCccEEEEEEeCCHHHHHHHHHHhh
Q 000086 485 IHEFSDSQFGHVFAFGESRALAIANMVLGL 514 (2304)
Q Consensus 485 i~~~~Ds~~g~via~G~~reeA~~~l~~AL 514 (2304)
+.+.++| +|+||++|+||+||+.++.+||
T Consensus 247 l~~~~~s-~g~vi~~G~t~~eA~~ka~raL 275 (275)
T d1a9xa5 247 LTTQMKS-VGEVMAIGRTQQESLQKALRGL 275 (275)
T ss_dssp CCSSCCC-CEEEEEEESSHHHHHHHHHHHS
T ss_pred eCCCccc-CEEEEEEECCHHHHHHHHHHhC
Confidence 6677888 9999999999999999999987
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-37 Score=366.24 Aligned_cols=263 Identities=52% Similarity=0.921 Sum_probs=237.3
Q ss_pred cCHHHHHHHHHHCCCCcCCCCCCCccC---CCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeE
Q 000086 171 GDKIGSSLIAQAANVPTLPWSGSHVKI---PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR 247 (2304)
Q Consensus 171 gDK~~sr~laq~aGVPtpp~s~~~~~~---~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr 247 (2304)
|||+.+|++|+++|||+.|+++++++. ........++.++|..+.+.|.+|+.++++++||||||||+.|+||+||+
T Consensus 1 gdK~~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~igfPvvVKP~~~~gs~Gv~ 80 (267)
T d1w96a3 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIR 80 (267)
T ss_dssp CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEE
T ss_pred CCHHHHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHHhcCCCEEEEeecccCCeeEE
Confidence 799999999999999999998877662 12234456777889999999999999999999999999999999999999
Q ss_pred EECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHH
Q 000086 248 KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~ 327 (2304)
+|++++||.++++.+...+.+++++||||++|.+|+++++++|+.|..+.+.++.|..++++.......|++.++....+
T Consensus 81 iv~~~~el~~a~~~a~~~s~~~~vlVEe~I~G~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (267)
T d1w96a3 81 QVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFH 160 (267)
T ss_dssp EECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCHHHHH
T ss_pred eecccchhhhhhhhhhhhcccchhhhhhhccchhhhhhhheeccCcceeeecccccccccccccccceeecccCchHHHH
Confidence 99999999999999998888889999999999999999999999999999999999999998888877888889999999
Q ss_pred HHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhccc
Q 000086 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG 407 (2304)
Q Consensus 328 ~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg 407 (2304)
++.+.+.++++++|+.|.+++||++++++|++||||+|||+|++||+++++||+|++++++++|+|+||+.+++++..+|
T Consensus 161 ~~~~~a~~~~~~lg~~g~~~vd~~~~~~~g~~yviEiNpR~~~~~~~~~~atGvdl~~~~i~~a~G~pl~~~~~~~~~~~ 240 (267)
T d1w96a3 161 EMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYG 240 (267)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccceeeeeeCCCCcEEEEEeccccccceeEEeeeeCCCHHHHHHHHHCCCChhhcchhhhhcC
Confidence 99999999999999999999999999778999999999999999999999999999999999999999999999999888
Q ss_pred ccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCC-CCCCCCCC
Q 000086 408 MEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDP-DDGFKPTS 459 (2304)
Q Consensus 408 ~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp-~~~f~P~~ 459 (2304)
..|.+ ++.|++|+++||+ .+.|.|.+
T Consensus 241 ~~~~~--------------------------~~~i~~~~~~~~~~~~~~~p~~ 267 (267)
T d1w96a3 241 MNPHS--------------------------ASEIDFEFKTQDATKKQRRPIP 267 (267)
T ss_dssp CCTTC--------------------------CCCCCTTCCSHHHHHHCCCCCC
T ss_pred CCCCC--------------------------ccCeEeeeeCCCCCCCCCCCCC
Confidence 77654 4556667888875 45577753
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-38 Score=367.50 Aligned_cols=253 Identities=19% Similarity=0.281 Sum_probs=196.6
Q ss_pred CccccCCCc-ccchhhhhcccCccCCCCc-----chhHHHHHHHHHHHhHhhhCCCCCCCCcCccccccccccCCCCCCc
Q 000086 1536 LASTCCNIR-SFFFSSFNLSISDCKSCSC-----EKCYLQAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWG 1609 (2304)
Q Consensus 1536 ~~~~c~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~ 1609 (2304)
.|.|||+|+ .+|.+++..|+++||+|+| ...+.++| .+.++|.+ ......+.+.|.+.+ ...|.
T Consensus 1 ~W~~C~~C~~~~~~~~l~~~~~vC~~C~~h~~ltaReRi~~L--~D~gsf~E-------i~~~~~~~d~l~~~d-~~~y~ 70 (263)
T d2f9yb1 1 VWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSL--LDEGSLVE-------LGSELEPKDVLKFRD-SKKYK 70 (263)
T ss_dssp CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHH--SCSSCCEE-------CSCSCCCCCSSCCSS-GGGTC
T ss_pred CcCcCCCCcceeeHHHHHHhCCCCcCCCCCCCcCHHHHHHHH--ccCCceEE-------eCCCcccCCchhccc-ccccc
Confidence 599999987 8999999999999999999 22222222 23334433 334444556666655 56688
Q ss_pred CCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 000086 1610 TPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA 1689 (2304)
Q Consensus 1610 ~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GA 1689 (2304)
+++.+..+.+|.+++ +|++..++ +||+|+|+++||||+|||+|..+++|+.++.|+|.+.++|+|++.+|||+
T Consensus 71 ~~~~~~~~~tg~~d~-vv~g~G~i------~G~~v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~lPlI~~~~sgG~ 143 (263)
T d2f9yb1 71 DRLASAQKETGEKDA-LVVMKGTL------YGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGA 143 (263)
T ss_dssp ------CCSSCCSSS-EEEEECEE------TTEECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSB
T ss_pred cchhhhccccCCCCc-eEEEEEEE------CCEEEEEEeeeehhhccccccchhhHHhHHHHHHHHcCCCeEEEecCCCc
Confidence 889999999998776 88888765 99999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccccc
Q 000086 1690 RIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAI 1769 (2304)
Q Consensus 1690 Ri~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~i 1769 (2304)
||+ |+..++++|. +. + ..... ++.
T Consensus 144 r~~--e~~~sl~~~~--------~~----~---~~~~~-----------------------------------~~~---- 167 (263)
T d2f9yb1 144 RMQ--EALMSLMQMA--------KT----S---AALAK-----------------------------------MQE---- 167 (263)
T ss_dssp CGG--GTHHHHHHHH--------HH----H---HHHHH-----------------------------------HHH----
T ss_pred ccc--cccchhhcch--------hH----H---HHHHH-----------------------------------HHh----
Confidence 999 8888887765 10 0 00000 000
Q ss_pred ccccccccccceEEEEEcCcccchhhh-hhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceeecccCceE
Q 000086 1770 AGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVH 1848 (2304)
Q Consensus 1770 ag~~s~ay~~iptis~vtg~t~G~gAy-l~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~~nGv~d 1848 (2304)
..||+|++++|+|+||+|| ++.++|++++++++.|+|+||++|++++|+++ ++++||+++|.+||++|
T Consensus 168 --------~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP~vve~~~ge~~---~e~~g~a~~~~~~G~iD 236 (263)
T d2f9yb1 168 --------RGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PPGFQRSEFLIEKGAID 236 (263)
T ss_dssp --------TTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHHGGGTCCS
T ss_pred --------CCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCHHHHhhhcCCcC---ChhhccHHHHHhCCCCC
Confidence 1269999999999999766 56667777777788999999999999999999 79999999999999999
Q ss_pred EEecCcH--HHHHHHHHHHhcCCCCC
Q 000086 1849 LTVSDDL--EGISAILKWLSYVPPHI 1872 (2304)
Q Consensus 1849 ~~v~dd~--~~~~~i~~~LsylP~~~ 1872 (2304)
.++++++ +.+.+++++|+|+|+++
T Consensus 237 ~vv~~ee~~~~l~~~l~~L~~~p~~~ 262 (263)
T d2f9yb1 237 MIVRRPEMRLKLASILAKLMNLPAPN 262 (263)
T ss_dssp EECCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEECCHHHHHHHHHHHHHHhhCCCCC
Confidence 9998765 45667777888888754
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-34 Score=339.56 Aligned_cols=255 Identities=20% Similarity=0.273 Sum_probs=202.4
Q ss_pred HHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHH
Q 000086 175 GSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE 254 (2304)
Q Consensus 175 ~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eE 254 (2304)
.++++++++|||+|+|.. ++|.+|+.++++++||||||||+.|+||+|+++|+|.+|
T Consensus 1 rF~~~l~~lgi~~p~~~~-----------------------v~s~~ea~~~a~~iGfPvivKps~~~gG~G~~iv~~~~e 57 (259)
T d1a9xa6 1 RFQHAVERLKLKQPANAT-----------------------VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEAD 57 (259)
T ss_dssp HHHHHHHHHTCCCCCEEE-----------------------CCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHH
T ss_pred ChHHHHHHCCCCCCCceE-----------------------ECCHHHHHHHHHHhCCCEEEEECCCCCCCccEeecCHHH
Confidence 478999999999999876 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEE---eCCCCCCCHHHHHHHHH
Q 000086 255 VRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE---EGPITVAPLETVKKLEQ 331 (2304)
Q Consensus 255 L~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiie---eaPa~~l~~e~~~~m~e 331 (2304)
|..+++++....+..+++||+|+++++|++|++++|+. .+.+.+..|.+++++++..+ ..|+..++++..++|.+
T Consensus 58 l~~~~~~a~~~~~~~~vlie~~i~~~~Eiev~~i~Dg~--~~~i~~i~e~i~~~gvhsgds~~~~p~~~l~~~~~~~l~~ 135 (259)
T d1a9xa6 58 LRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE--MVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQ 135 (259)
T ss_dssp HHHHHHHCC--------EEEBCCTTCEEEEEEEEECSS--CEEEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHH
T ss_pred HHHHhhhhhcccccchhhhhhhcCCCeEEEEEEEEeCC--cEEEEeeeeccccCcceeEeccccccCccCCHHHHHHHHH
Confidence 99999999888888899999999999999999999964 33456677889888776543 34777799999999999
Q ss_pred HHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCC
Q 000086 332 AARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHG 411 (2304)
Q Consensus 332 ~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ipdir~~yg~~~~ 411 (2304)
.|.++++++||.|++++||+++ ++++||||+|||+|++||+++++||+||+++++++++|.++..+ .
T Consensus 136 ~a~kia~~l~~~G~~~vef~v~--~~~~y~iEvNpR~~~~~~~~~k~tg~~lv~~~~~i~~G~~l~~~---~-------- 202 (259)
T d1a9xa6 136 QVQKLAFELQVRGLMNVQFAVK--NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQ---G-------- 202 (259)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEC--SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHHHTTCCHHHH---T--------
T ss_pred HHHHHHHHhhhccceeEEEEEE--CCEEEEEEcccccCCceeeeeHhhCCCHHHHHHHHhcCCCcccc---c--------
Confidence 9999999999999999999997 78999999999999999999999999999999999999988531 0
Q ss_pred CcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCC
Q 000086 412 GVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDS 491 (2304)
Q Consensus 412 ~~~~~~~~~~~~~i~f~~~~~~~~~~~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds 491 (2304)
....+.+.++++.+.+.+.++-.++.|..|+ .. . |
T Consensus 203 -------------------~~~~~~~~~~~vk~~v~~f~k~~~~d~~lg~----------em---------------k-s 237 (259)
T d1a9xa6 203 -------------------VTKEVIPPYYSVKEVVLPFNKFPGVDPLLGP----------EM---------------R-S 237 (259)
T ss_dssp -------------------CCSCCCCSSEEEEEEECGGGGCTTSCCCCCS----------SC---------------C-C
T ss_pred -------------------cccccCCCcEEEEEEcCCccccCCCCCCCCC----------Ce---------------e-e
Confidence 0112344678898888776544443333331 00 0 1
Q ss_pred ccEEEEEEeCCHHHHHHHHHHh
Q 000086 492 QFGHVFAFGESRALAIANMVLG 513 (2304)
Q Consensus 492 ~~g~via~G~~reeA~~~l~~A 513 (2304)
.|.+++.|.|++||..++.++
T Consensus 238 -tGevm~~g~~~~eA~~Ka~~~ 258 (259)
T d1a9xa6 238 -TGEVMGVGRTFAEAFAKAQLG 258 (259)
T ss_dssp -CEEEEEEESSHHHHHHHHHHH
T ss_pred -eeeEEEEcCCHHHHHHHHHhc
Confidence 488999999999999988765
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-33 Score=316.47 Aligned_cols=204 Identities=37% Similarity=0.628 Sum_probs=192.4
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||+.+|++|+++||||+||+... .+++.+++.++++++||||||||+.|+||+|+++|++
T Consensus 1 dK~~~~~~~~~~GvP~vp~~~~~--------------------~~~s~dea~~~a~~iG~PvivKp~~~~ggrGv~~v~~ 60 (216)
T d2j9ga3 1 DKVSAIAAMKKAGVPCVPGSDGP--------------------LGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60 (216)
T ss_dssp SHHHHHHHHHHHTCCBCCBCSSC--------------------CCSCHHHHHHHHHHHCSSEEEEEEEEETTEEEEEECS
T ss_pred CHHHHHHHHHHcCcCCCCCCCCC--------------------CCCCHHHHHHHHHHcCCCEEEecccccCCceeEeecc
Confidence 89999999999999999987411 2689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHH
Q 000086 252 DDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~ 327 (2304)
.+|+.++|+.+..++ ++.++++|+|++|.+|++++++.|+.|+++.+..++|+.+++|++.++.+|++..+++..+
T Consensus 61 ~~el~~a~~~~~~ea~~~~~~~~vlvE~~i~g~~~~~~~i~~dg~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 140 (216)
T d2j9ga3 61 DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRR 140 (216)
T ss_dssp HHHHHHHHHHHHHHTC--CCCCCEEEEECCSSCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCCCceEeeeeecCcccceeEEEEcCCCCeeeccccccCcccccCCeEEeccCccccchhhh
Confidence 999999999876543 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 328 ~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
.|.+++.++++.+|+.|++++||+++ ++++||+|+|||+++++++++++||+|++++++++|+|.||+
T Consensus 141 ~~~~~~~~~~~~~~~~G~~~~e~~~~--~~~~~viEvnpR~~~~~~~~~~~tGvdlv~~~i~~alG~~l~ 208 (216)
T d2j9ga3 141 YIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLS 208 (216)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEE--TTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC
T ss_pred hhHHHHHHHHHHcCccCcceeEeEec--CCeEEEEeecCccccchhhhhHHHCcCHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999 889999999999999999999999999999999999999986
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=2.1e-32 Score=319.06 Aligned_cols=179 Identities=25% Similarity=0.366 Sum_probs=158.8
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|+|++..++ +||+|+|+++||||++||+|+.+++|+.++.++|.++++|+|+|.+|||+||+ |++.++++
T Consensus 76 ~d~vV~G~G~I------~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~lP~I~l~dsgGar~~--eg~~~~~~ 147 (258)
T d2a7sa1 76 GDGVVTGYGTI------DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQ--EGVVSLGL 147 (258)
T ss_dssp TTTEEEEEEES------SSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GCTHHHHH
T ss_pred cccceeEEEEe------ccceEEEecccceEeCCccchhhhhHHHHHHHHHHhcCCceEEEeccCCcccc--cccccccc
Confidence 45789888765 99999999999999999999999999999999999999999999999999999 88888865
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
+. .++. .. ...||. ||+
T Consensus 148 ~~------------~~~~---~~-------------------------------------~~~~~~-----------vP~ 164 (258)
T d2a7sa1 148 YS------------RIFR---NN-------------------------------------ILASGV-----------IPQ 164 (258)
T ss_dssp HH------------HHHH---HH-------------------------------------HHHTTT-----------SCE
T ss_pred hh------------hHHH---HH-------------------------------------HHHcCC-----------CCE
Confidence 54 1111 00 011222 799
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++++|||+||+||.+.++|++||+++ +.|+|+||++|++++|+++ ++++|||+++|. +||++|++++||.++++.
T Consensus 165 I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~aGP~vV~~~~ge~~--~~eeLGga~~h~~~sG~~D~v~~de~~a~~~ 242 (258)
T d2a7sa1 165 ISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDY 242 (258)
T ss_dssp EEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEecCcccHHHHHHHhccceEeecCceEEEccChhHHHHhcCCcc--ChhhccCHhHhhhhccccceEeCCHHHHHHH
Confidence 999999999999999999999999755 8999999999999999999 899999999997 799999999999999999
Q ss_pred HHHHHhcCCCCCCC
Q 000086 1861 ILKWLSYVPPHIGG 1874 (2304)
Q Consensus 1861 i~~~LsylP~~~~~ 1874 (2304)
++++|||||+|+.+
T Consensus 243 ~r~~Ls~lP~nn~~ 256 (258)
T d2a7sa1 243 VRELLSYLPPNNST 256 (258)
T ss_dssp HHHHHHHSCSSTTS
T ss_pred HHHHHHhCCCCCcc
Confidence 99999999998865
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.97 E-value=6.5e-32 Score=315.80 Aligned_cols=181 Identities=23% Similarity=0.358 Sum_probs=160.5
Q ss_pred eEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcc
Q 000086 1624 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1703 (2304)
Q Consensus 1624 ~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~v 1703 (2304)
.|+|++..++ +||+|+|+++||||+|||+|+.+++|+.|+.++|.++++|+|+|.+|||+||+ |++.+++++
T Consensus 76 d~vv~G~G~I------~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~lPlI~l~dsgGarm~--e~~~~~~~~ 147 (258)
T d1xnya1 76 DGVVTGYGTV------DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ--EGVASLGAY 147 (258)
T ss_dssp TTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHHH
T ss_pred CeeEEEEEEE------CCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHcCCceEEEecCCCcccC--cccccccch
Confidence 5789998776 99999999999999999999999999999999999999999999999999999 777777554
Q ss_pred cccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceEE
Q 000086 1704 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1783 (2304)
Q Consensus 1704 aw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipti 1783 (2304)
. .++. .. ...||. ||+|
T Consensus 148 ~------------~~~~---~~-------------------------------------~~~s~~-----------vP~I 164 (258)
T d1xnya1 148 G------------EIFR---RN-------------------------------------THASGV-----------IPQI 164 (258)
T ss_dssp H------------HHHH---HH-------------------------------------HHTTTT-----------SCEE
T ss_pred h------------HHHH---HH-------------------------------------HHHcCC-----------CCEE
Confidence 3 1110 00 111222 6999
Q ss_pred EEEcCcccchhhhhhcccCEEEEec-CcceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHHH
Q 000086 1784 TYVTGRTVGIGAYLARLGMRCIQRL-DQPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1861 (2304)
Q Consensus 1784 s~vtg~t~G~gAyl~~lgd~~I~~~-~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i 1861 (2304)
++++|+|+||+||.+.++|++||++ ++.|+|+||++|+.++|+++ ++++|||+++|. +||++|.+++||.++++.+
T Consensus 165 ~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP~vv~~~~ge~i--~~eelgga~~h~~~sG~~d~v~~de~ea~~~~ 242 (258)
T d1xnya1 165 SLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEYV 242 (258)
T ss_dssp EEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSSCCSEEESSHHHHHHHH
T ss_pred EEEcCCcChhHHHHHHhccchhhcccceEEEecCHHHHHHHhcCcc--ChHHhccHHHHHhcCCeeEEEeCCHHHHHHHH
Confidence 9999999999999999999999986 47899999999999999999 889999999997 7999999999999999999
Q ss_pred HHHHhcCCCCCCCCCC
Q 000086 1862 LKWLSYVPPHIGGALP 1877 (2304)
Q Consensus 1862 ~~~LsylP~~~~~~~p 1877 (2304)
+++|||||+|+.+.||
T Consensus 243 r~~Ls~lP~~~~e~pP 258 (258)
T d1xnya1 243 KQLLSYLPSNNLSEPP 258 (258)
T ss_dssp HHHHHHSCSSTTSCCC
T ss_pred HHHHHhcccccccCCC
Confidence 9999999999998776
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=99.97 E-value=5.7e-32 Score=314.81 Aligned_cols=177 Identities=22% Similarity=0.332 Sum_probs=159.0
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|+|++..++ +||+|+|+++||||+|||+|..+++|+.++.++|.++++|+|++.+|||+||+ |++.++++
T Consensus 76 ~dgvV~G~G~I------~gr~v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sgG~r~~--eg~~~l~~ 147 (253)
T d1on3a1 76 ADGVVTGRGTI------LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQ--EGIDSLSG 147 (253)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------eceechhhhchhhhhcccceecccchhhhhHHHHhhcCCCeEEEEecCCCccc--ccceeccc
Confidence 56799998765 99999999999999999999999999999999999999999999999999998 88888866
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
++ .+|. .+. +.||. ||+
T Consensus 148 ~~------------~~~~---~~~-------------------------------------~ls~~-----------vP~ 164 (253)
T d1on3a1 148 YG------------KMFF---ANV-------------------------------------KLSGV-----------VPQ 164 (253)
T ss_dssp HH------------HHHH---HHH-------------------------------------HHTTT-----------SCE
T ss_pred cc------------eehH---HHH-------------------------------------HHhcc-----------ceE
Confidence 54 1111 111 12222 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1861 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i 1861 (2304)
|++++|||+||+||.+.++|++||++++.|+|+||++|++++|+++ ++++|||+++|. +||++|++++||.++++.+
T Consensus 165 i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP~vVe~~~ge~~--~~eelGga~~h~~~sG~iD~v~~~e~~a~~~~ 242 (253)
T d1on3a1 165 IAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIA 242 (253)
T ss_dssp EEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC--CHHHHHSHHHHHHTTCCCSEEESSHHHHHHHH
T ss_pred EEEEecCcccceeeccchhhheeccccceEEecCcchhhhhhCCcC--ChHhccCHHHhhhccccceEEECCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 889999999997 7999999999999999999
Q ss_pred HHHHhcCCCCC
Q 000086 1862 LKWLSYVPPHI 1872 (2304)
Q Consensus 1862 ~~~LsylP~~~ 1872 (2304)
++||||||+|+
T Consensus 243 r~lls~lP~nn 253 (253)
T d1on3a1 243 KKLLSFLPQNN 253 (253)
T ss_dssp HHHHHTSCSST
T ss_pred HHHHHhcccCC
Confidence 99999999875
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.97 E-value=4.7e-30 Score=292.49 Aligned_cols=203 Identities=36% Similarity=0.601 Sum_probs=186.2
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCH
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~ 252 (2304)
|..||++|+++|||++||+. ..++|.+|+.++++++||||||||..|+||+|+++|++.
T Consensus 1 K~~~k~~~~~aGvP~~p~~~---------------------~~v~s~~ea~~~~~~ig~P~vvKP~~~~~s~gv~~v~~~ 59 (214)
T d1ulza3 1 KARSKEVMKKAGVPVVPGSD---------------------GVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNE 59 (214)
T ss_dssp HHHHHHHHHHTTCCBCCBCS---------------------SSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSH
T ss_pred CHHHHHHHHHcCCCcCCCcC---------------------CCCCCHHHHHHHHHHcCCCEEEeeccccCCccceeeecc
Confidence 88999999999999988753 127899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----CCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHH
Q 000086 253 DEVRALFKQVQGE----VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKK 328 (2304)
Q Consensus 253 eEL~~a~~~~~~e----~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~ 328 (2304)
+|+..+++....+ .+..+++||||++|.+++.+.++.|+++++..+..++|++++++......++....+++...+
T Consensus 60 ~el~~a~~~~~~~~~~~~~~~~viiEe~i~G~e~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 139 (214)
T d1ulza3 60 EELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREY 139 (214)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeheeecCcceeeEEEEEcCCCeEEEEeccccccCccccceeEEeecccccHHHHHH
Confidence 9999988865443 346789999999998888888999999999999999999999988878888888789999999
Q ss_pred HHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000086 329 LEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2304)
Q Consensus 329 m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~ 397 (2304)
+.+.+.++++++||.|.+++||++++ +|++||||+|||+++++++++.++|+|++++++++++|.||+
T Consensus 140 ~~~~~~~~~~~lg~~G~~~vef~~~~-dg~~~~iEin~R~~~~~~~~~~a~Gidl~~~~v~~alG~~l~ 207 (214)
T d1ulza3 140 YGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLT 207 (214)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCccceEEEEEECC-CCCEEEEEecCcCCCchhhhHHHHCcCHHHHHHHHHCCCCCC
Confidence 99999999999999999999999995 788999999999999999999999999999999999999986
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=4.7e-31 Score=306.94 Aligned_cols=177 Identities=26% Similarity=0.409 Sum_probs=157.0
Q ss_pred ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhc
Q 000086 1623 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1702 (2304)
Q Consensus 1623 ~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~ 1702 (2304)
..|+|++..++ +||+|+|+++||||++||+|+.+++|+.++.++|.++++|+|+|.+|||+||+ |++.++++
T Consensus 73 ~dgvV~G~G~I------~G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~~P~I~~~dsgG~r~~--e~~~~l~~ 144 (251)
T d1vrga1 73 RDGVITGVGEI------NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQ--EGVDALAG 144 (251)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred ccceEEEEEEE------ccEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccc--cccccccc
Confidence 46799999876 99999999999999999999999999999999999999999999999999999 87877754
Q ss_pred ccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeeccccccccccccccccccccccccccccceE
Q 000086 1703 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1782 (2304)
Q Consensus 1703 vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~ipt 1782 (2304)
+. .+|.. .. ..||. ||+
T Consensus 145 ~~------------~~~~~---~~-------------------------------------~~s~~-----------iP~ 161 (251)
T d1vrga1 145 YG------------EIFLR---NT-------------------------------------LASGV-----------VPQ 161 (251)
T ss_dssp HH------------HHHHH---HH-------------------------------------HHTTT-----------SCE
T ss_pred ch------------HHHHH---HH-------------------------------------HHCCC-----------CCE
Confidence 43 22210 00 11222 699
Q ss_pred EEEEcCcccchhhhhhcccCEEEEecC-cceEecChHHHHHhhcccccccccccCcceeec-ccCceEEEecCcHHHHHH
Q 000086 1783 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1860 (2304)
Q Consensus 1783 is~vtg~t~G~gAyl~~lgd~~I~~~~-~~i~ltG~~al~~~lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~ 1860 (2304)
|++++|||+||+||.+.++|++||+++ +.|+++||++++.++|+++ ++++|||+++|. ++|++|++++||+++++.
T Consensus 162 I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~aGp~vv~~~~ge~~--~~eelGga~~h~~~sG~~D~v~~de~~a~~~ 239 (251)
T d1vrga1 162 ITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGNAHFLADNDEKAMSL 239 (251)
T ss_dssp EEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEccCccccceehhhhCceEEEEccceeEEecCchhhhhhcCCcC--ChHHccchhhhhhccccceEEECCHHHHHHH
Confidence 999999999999999999999999765 7899999999999999998 889999999997 699999999999999999
Q ss_pred HHHHHhcCCCCC
Q 000086 1861 ILKWLSYVPPHI 1872 (2304)
Q Consensus 1861 i~~~LsylP~~~ 1872 (2304)
+++||||||+|+
T Consensus 240 ir~lLs~LP~nn 251 (251)
T d1vrga1 240 VRTLLSYLPSNN 251 (251)
T ss_dssp HHHHHTTSCSST
T ss_pred HHHHHHhCCCCC
Confidence 999999999875
|
| >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Acetyl-CoA carboxylase, BC-N subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.4e-30 Score=279.73 Aligned_cols=141 Identities=62% Similarity=1.030 Sum_probs=135.9
Q ss_pred cchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEcc
Q 000086 30 AAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVP 109 (2304)
Q Consensus 30 ~~~~~~~~~~~~~~g~~~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp 109 (2304)
..++++++|++.+||.+||+||||||||++|+|++|+||+||++|++.+..+++|+|++++|.+.++.|+++||+.+.+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~ikkvLIANRGEIA~Ri~rt~relgi~t~~~~~~~~~v~Va~~~d~D~~s~~v~~aD~~v~l~ 107 (170)
T d1w96a2 28 LEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVP 107 (170)
T ss_dssp SCCCHHHHHHHHTTCCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECC
T ss_pred CCcccHHHHHHHcCCCcccceeeeecCcHHHHHHHHHHHHhcchhcccccccceeEEEecCccccccchhhhhhhhhccC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHC--CCeEECCCHHHHHHh
Q 000086 110 GGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTK--GIIFLGPPATSMAAL 170 (2304)
Q Consensus 110 ~~~~~~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~--GI~fiGPs~eam~~l 170 (2304)
++++.++|+|++.|+++|+++++|||||||||+|||+.|+++|++. ||.|+||++++|+.+
T Consensus 108 g~~~~~sYLn~~~II~~A~~~~~DAIHPGYGFLSEn~~FA~~~~~a~~giiFIGPs~~~i~~m 170 (170)
T d1w96a2 108 GGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSL 170 (170)
T ss_dssp CSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHS
T ss_pred CCCccchhhhHHHHHHHHHhcCCCEEEechhhhhhCHHHHHHHHHhcCCCEEECcCHHHHHhC
Confidence 9998899999999999999999999999999999999999999876 999999999999864
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=99.96 E-value=7.9e-30 Score=301.42 Aligned_cols=202 Identities=18% Similarity=0.222 Sum_probs=163.5
Q ss_pred cccccccccCCCCCCcCCccccccCCCCC-----ceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHH
Q 000086 1594 LKVTELKFADDSGTWGTPLVLVERSPGLN-----NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLA 1668 (2304)
Q Consensus 1594 ~~~~el~~~~~~~~~~~~l~e~~r~~g~n-----~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~r 1668 (2304)
.++.++++|+ | +|.|+....+.. ..|||+++.++ +||+|+|++||+||++||+|+.+++|+.|
T Consensus 63 ReRI~~LlD~--g----Sf~E~~~l~~~~~~~~~~~~vV~G~g~i------~G~~v~v~a~D~t~~gGs~~~~~~~K~~r 130 (287)
T d1pixa2 63 LQRIEKLVEP--G----SWRPLNTLFNPQGNKNGSVAIVKGLGRV------NGKWCVVVASDNKKLAGAWVPGQAECLLR 130 (287)
T ss_dssp HHHHHHHSCT--T----CCEEESTTCCTTCCTTSCCSEEEEEEEE------TTEEEEEEEECTTTTTTEECTTHHHHHHH
T ss_pred HHHHHHHcCC--c----chhhHHHHhhhccCCCCCCCceEEEeec------ccceEEEEEeccccccccchhhHHHHHHH
Confidence 4677788887 5 466665443321 35799999876 99999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEE
Q 000086 1669 VTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVV 1748 (2304)
Q Consensus 1669 a~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i 1748 (2304)
+.++|.+.++|+|+|.+|+||||+.+++.+..+ .+++.+|... .++
T Consensus 131 ~~~lA~~~~lP~I~l~ds~Ga~~~~~~e~~~~~-----------~~~g~~~~~~---a~l-------------------- 176 (287)
T d1pixa2 131 ASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNR-----------RGGGTPFFRN---AEL-------------------- 176 (287)
T ss_dssp HHHHHHHHTCCEEEEECCCEECGGGHHHHSSST-----------TSTTHHHHHH---HHH--------------------
T ss_pred HHHhhhhcCCCEEEEecCCcccCCcchhhccch-----------hhHHHHHHHH---HHH--------------------
Confidence 999999999999999999999999766654321 3344443211 111
Q ss_pred EeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHh-----
Q 000086 1749 DSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKL----- 1823 (2304)
Q Consensus 1749 ~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~----- 1823 (2304)
|+ ..||+|++|+|+|+|||||.+..++++++.+++.|+|+||++++.+
T Consensus 177 -----------------s~----------~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~ 229 (287)
T d1pixa2 177 -----------------NQ----------LGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGH 229 (287)
T ss_dssp -----------------HH----------TTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSS
T ss_pred -----------------hh----------cCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhh
Confidence 11 1279999999999999999876666666677799999999886654
Q ss_pred ------------hcccccccccccCcceeec-ccCceEEEecCcHHHHHHHHHHHhcCCC
Q 000086 1824 ------------LGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPP 1870 (2304)
Q Consensus 1824 ------------lG~~vy~s~~~lGG~~i~~-~nGv~d~~v~dd~~~~~~i~~~LsylP~ 1870 (2304)
+|+++ +.++|||+++|. .+|++|++++||+++++.+|+||||||+
T Consensus 230 ~~~~~~~ei~~~~ge~~--~~eeLGGa~~H~~~sG~~d~v~~~e~~ai~~~r~~ls~lPq 287 (287)
T d1pixa2 230 VDLEYANEIADMVDRTG--KTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGMLPK 287 (287)
T ss_dssp CCHHHHHHHHHHHHTTC--CCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTSCC
T ss_pred hhhhhHHHHHhhhcccc--cccccccHHHhhhhcccceeecCCHHHHHHHHHHHHhhCCC
Confidence 58888 789999999998 6999999999999999999999999995
|
| >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Acetyl-CoA carboxylase, BC-C subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=9.4e-29 Score=254.19 Aligned_cols=116 Identities=59% Similarity=1.105 Sum_probs=109.9
Q ss_pred ceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 438 ~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
+||||+||||||||.++|.|++|+|+.+.+|++++||+++++..|+.|+++||||+||||+||+||++|+++|.+||+++
T Consensus 1 rGhaIE~Ri~AEdP~~~F~Ps~G~i~~~~~p~~~~vR~d~~~~~G~~v~~~YDsmlAKlI~~g~~R~~Ai~rl~~aL~e~ 80 (116)
T d1w96a1 1 KGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKEL 80 (116)
T ss_dssp CSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSEEEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEecccCCCCcccCCceeeEEEEcCCceeeeeeccccCcccccccChHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 518 QIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 518 ~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
.|.|.|+||++||++||.+|+|++|+++|+|||+++
T Consensus 81 ~I~G~v~TN~~fL~~iL~~~~F~~g~~~T~fle~~i 116 (116)
T d1w96a1 81 SIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 116 (116)
T ss_dssp TTCC----CCHHHHHHHTSHHHHTTCCCTTHHHHHC
T ss_pred eEeccccccHHHHHHHhCChhhccCCcchHHHHhhC
Confidence 999988999999999999999999999999999864
|
| >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.1e-28 Score=248.73 Aligned_cols=114 Identities=30% Similarity=0.566 Sum_probs=111.7
Q ss_pred ceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 438 ~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
+||||+|||||||| ++|.|++|+|+.+.+|++++||++.++.+|..|+++||||+||||+||+||++|+++|.+||+++
T Consensus 1 rGhAIE~Ri~AEdp-~~f~Ps~G~i~~~~~p~g~gvRvDs~v~~G~~v~~~YDsmiAKlI~~g~~R~~Ai~~l~~aL~e~ 79 (116)
T d2j9ga1 1 RGHAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQEL 79 (116)
T ss_dssp CSEEEEEEEECBCT-TTCSBCCEECCEEECCCSTTEEEECCCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEeccCC-CcCccCCeeeeEEECCCCCCeeeeeeeeCCcEeccccchHHHHHhhcCCCHHHHHHHHHHHHHhc
Confidence 59999999999999 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 518 QIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 518 ~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
.|.| ++||++||++||++|+|++|+++|+|||+++
T Consensus 80 ~I~G-v~TN~~~l~~il~~~~f~~g~~~T~fl~~~l 114 (116)
T d2j9ga1 80 IIDG-IKTNVDLQIRIMNDENFQHGGTNIHYLEKKL 114 (116)
T ss_dssp EEES-SCCSHHHHHHHHTCHHHHHCCCCTTHHHHHH
T ss_pred cccC-cCccHHHHHHHhCChhhccCCceehHHHhhc
Confidence 9999 9999999999999999999999999999975
|
| >d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.94 E-value=1.1e-27 Score=247.82 Aligned_cols=115 Identities=18% Similarity=0.406 Sum_probs=112.8
Q ss_pred ceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCCccEEEEEEeCCHHHHHHHHHHhhcce
Q 000086 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2304)
Q Consensus 438 ~ghai~~RI~aEdp~~~f~P~~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2304)
+||||+||||||||.++|.|++|+|+.+.+|++++||++.++.+|..|+++||||+||||+||+||++|+++|.+||+++
T Consensus 2 ~GhAIE~Ri~AEdp~~~F~Ps~G~i~~~~~P~~~~vRvdt~v~~G~~v~~~YDsmiAKlIv~g~~R~~Ai~rl~~aL~e~ 81 (123)
T d1ulza1 2 NGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETY 81 (123)
T ss_dssp CSEEEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTC
T ss_pred CcEEEEEEEecccCCCCccCCCCcceeeecccccceeecccccCCCEeccchhHHHHHHHhhCccHHHHHHHHHHHHHHh
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCHHHHHHhcCccccccccccchhhhhhh
Q 000086 518 QIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2304)
Q Consensus 518 ~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2304)
.|.| ++||++||++||.+|+|++|+++|+|||++.
T Consensus 82 ~I~G-v~TNi~fl~~il~~~~F~~g~~~T~fle~~~ 116 (123)
T d1ulza1 82 EITG-VKTTIPLLINIMKEKDFKAGKFTTKYLEEHP 116 (123)
T ss_dssp EECS-SCCSHHHHHHHHHCHHHHHTCCCTTTTTTCG
T ss_pred ccCC-cCccHHHHHHHhCChhhccCCcEehhhhcCH
Confidence 9999 9999999999999999999999999999863
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.7e-26 Score=234.93 Aligned_cols=114 Identities=28% Similarity=0.520 Sum_probs=107.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
||+||||||||++|+|++|+||+||++++ ++++ +.|.+++|+++||+.+.++++++.++|+|++.|+++
T Consensus 1 m~~kvLIANRGeiA~Ri~ra~~elgi~tv---------avys--~~D~~~~h~~~ade~v~lg~~~~~~sYl~~~~Ii~~ 69 (114)
T d2j9ga2 1 MLDKIVIANRGEIALRILRACKELGIKTV---------AVHS--SADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISA 69 (114)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEE---------EEEE--GGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHH
T ss_pred CCceeeEecCCHHHHHHHHHHHHhCCceE---------EEec--cccccccceecCCceeecCCCchhhhhcCHHHHHHH
Confidence 79999999999999999999999998874 4555 677899999999999999998888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhc
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALG 171 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lg 171 (2304)
|++.++|+|||||||+|||++|++.|++.|+.|+||++++|+.+|
T Consensus 70 A~~~~~dAiHPGyGFLSEn~~Fa~~~~~agi~FIGP~~~~i~~mG 114 (114)
T d2j9ga2 70 AEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114 (114)
T ss_dssp HHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHH
T ss_pred HHHhCCceeecchhhhhhhHHHHHHHHHCCCEEECcCHHHHHHcC
Confidence 999999999999999999999999999999999999999999875
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.92 E-value=3.5e-26 Score=232.61 Aligned_cols=114 Identities=30% Similarity=0.513 Sum_probs=106.6
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 47 ~~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|||||||||||++|+|++|+||+||+++ |++++ +.|.++.|+++||+.+.+++.+ .++|+|.+.|+++
T Consensus 1 m~kkvLIANRGEiA~Ri~ra~~elgi~t---------vav~s--~~D~~s~~~~~ad~~~~ig~~~-~~sYln~~~Ii~~ 68 (114)
T d1ulza2 1 MVNKVLVANRGEIAVRIIRACKELGIPT---------VAIYN--EVESTARHVKLADEAYMIGTDP-LDTYLNKQRIINL 68 (114)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCE---------EEEEC--GGGTTCHHHHHSSEEEECCSST-THHHHCHHHHHHH
T ss_pred CCceeeEecCCHHHHHHHHHHHHhcCCe---------EEEec--chhhcCcchhhcceeeecCCCh-hhhhhcHHHHHHH
Confidence 7899999999999999999999999887 44554 6678999999999999998754 6899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcC
Q 000086 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGD 172 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgD 172 (2304)
|+++++|+|||||||+|||++|++.|++.|+.|+||++++|+.+||
T Consensus 69 A~~~~~daihPGyGFLSEna~Fa~~~~~~gi~FIGP~~~~i~~mGD 114 (114)
T d1ulza2 69 ALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGD 114 (114)
T ss_dssp HHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHS
T ss_pred HHHhCCCeEecchhhhhhHHHHHHHHHHCCCEEECcCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999998
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2e-25 Score=264.56 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=138.5
Q ss_pred cccCCCceecccC----CCCeEEEEEEEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000086 1917 IFDKDSFVETLEG----WARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1992 (2304)
Q Consensus 1917 l~D~gsF~E~~~~----~a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~ 1992 (2304)
+||. |.|+..+ ..+++++|+||++|+||+||+.+.+.. .+..+.+.+|+++|++++|++||
T Consensus 79 i~~~--f~eL~Gdr~~~dD~aii~G~a~~~g~~V~vIg~~kg~~-------------~~~~~~~n~G~~~p~~~rKa~r~ 143 (316)
T d2f9ya1 79 AFDE--FDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRE-------------TKEKIRRNFGMPAPEGYRKALRL 143 (316)
T ss_dssp HCEE--EEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSS-------------TTHHHHTGGGCCCHHHHHHHHHH
T ss_pred cccc--hhhcccccccCcCccccceeeeecCCeEEEEEeecCCC-------------cccccccccccccHHHHHHHHHH
Confidence 6764 8888654 357899999999999999999975422 22344566899999999999999
Q ss_pred HHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeec
Q 000086 1993 LMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYA 2072 (2304)
Q Consensus 1993 i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A 2072 (2304)
|++|++|+||||+|+|||||.+|..+|..|+.+++|+++.++++++||+|++|+ |+.+||++.+++. .|. ++|
T Consensus 144 ~~~a~~~~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~--g~g~~gga~a~~~---~d~--v~m 216 (316)
T d2f9ya1 144 MQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVI--GEGGSGGALAIGV---GDK--VNM 216 (316)
T ss_dssp HHHHHHTTCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEEHHHHHTTCC---CSE--EEE
T ss_pred HHHHHHcCcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEE--hhhhchhhhhhhh---hhH--HHH
Confidence 999999999999999999999999999999999999999999999999999999 7778888888876 476 999
Q ss_pred ccCcEEEeeCccchhhhhcchh
Q 000086 2073 DRTAKGNVLEPEGMIEIKFRTK 2094 (2304)
Q Consensus 2073 ~p~A~~gvl~Peg~v~i~~r~~ 2094 (2304)
|++|.++|++|||++.|.||+.
T Consensus 217 ~~~a~~svispEg~AsILwkd~ 238 (316)
T d2f9ya1 217 LQYSTYSVISPEGCASILWKSA 238 (316)
T ss_dssp CTTCEEESSCHHHHHHHHSSCS
T ss_pred HhhhHHhhccchhhhhHhhccc
Confidence 9999999999999999999976
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=9.6e-25 Score=244.74 Aligned_cols=199 Identities=16% Similarity=0.174 Sum_probs=164.2
Q ss_pred CHHHHHHHH-HHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEEC
Q 000086 172 DKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH 250 (2304)
Q Consensus 172 DK~~sr~la-q~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~ 250 (2304)
||..+|++| +++|||+|+|.. +.|.+|+.++++++||||||||+.|+||+|+++|+
T Consensus 1 ~~~~~rrla~~~~Gip~p~~~~-----------------------v~s~~dl~~~~~~ig~PvVvKP~~g~gs~gv~~v~ 57 (206)
T d1kjqa3 1 NREGIRRLAAEELQLPTSTYRF-----------------------ADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIR 57 (206)
T ss_dssp SHHHHHHHHHTTSCCCBCCEEE-----------------------ESSHHHHHHHHHHHCSSEEEEESCC---CCCEEEC
T ss_pred ChHHHHHHHHHHCCCCCCCCeE-----------------------ECCHHHHHHHHHHhCCCEEEeeccCCccCCceEEc
Confidence 788899987 689999999987 88999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHH
Q 000086 251 NDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKK 328 (2304)
Q Consensus 251 s~eEL~~a~~~~~~e~~--~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~ 328 (2304)
+.+|+.++++....... ...++++++..+..++++.+..+..|.........+.. +.......+....+.+...+
T Consensus 58 ~~~el~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 134 (206)
T d1kjqa3 58 SAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQE---DGDYRESWQPQQMSPLALER 134 (206)
T ss_dssp SGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETTEEEECCCEEEEEE---TTEEEEEEECCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccCcceeeeeeccccceeeeeeeeecCCCceeeccceeeec---cCccceeeccccCCHHHHHH
Confidence 99999999988775543 35788899998877888888888766554432211111 11222223333367888899
Q ss_pred HHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 329 LEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 329 m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
+.+.+..+.+.+++.|.+++||+.+ ++++||+|+|||+++++.+++.++|+|+++.++++++|.|++.
T Consensus 135 ~~~~~~~~~~~~~~~g~~~~e~~~~--~~~~~viEin~R~~~~~~~~~~~~~v~~~e~~ir~~~Glp~~~ 202 (206)
T d1kjqa3 135 AQEIARKVVLALGGYGLFGVELFVC--GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGG 202 (206)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEEEE--TTEEEEEEEESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHhhhhhhhceeeeccccccc--cCCceEEEeecCcccccceehhhcCCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999998 7889999999999999999999999999999999999999875
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2e-23 Score=232.54 Aligned_cols=194 Identities=16% Similarity=0.121 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..||++++++|||||+|.. +.|.+|+.++++++|||+|+||..|+||.|..++.+
T Consensus 1 DK~~~K~~l~~~GIptp~~~~-----------------------v~s~~d~~~~~~~ig~P~vvKp~~~~~~~~~~~v~~ 57 (198)
T d3etja3 1 DRLTQKQLFDKLHLPTAPWQL-----------------------LAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLR 57 (198)
T ss_dssp SHHHHHHHHHHTTCCBCCEEE-----------------------ECCGGGHHHHHHHHCSCEEEEESSSCBTTBSEEEEC
T ss_pred CHHHHHHHHHHCCcCCCCceE-----------------------ECCHHHHHHHHHHcCCCeeeeecccccccceeeecc
Confidence 899999999999999999987 889999999999999999999998887766666666
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccc-eEEEeCCCCCCCHHHHHHHH
Q 000086 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ-KIIEEGPITVAPLETVKKLE 330 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q-KiieeaPa~~l~~e~~~~m~ 330 (2304)
.+++..++... ...+++|+|+.+.+++++.++.+..+.+....... ....+. ......|+. .+++...++.
T Consensus 58 ~~~~~~~~~~~-----~~~~i~ee~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~-~~~~~~~~~~ 129 (198)
T d3etja3 58 ANETEQLPAEC-----YGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTH--NLHQDGILRTSVAFPQ-ANAQQQARAE 129 (198)
T ss_dssp GGGGGGSCGGG-----TTTEEEEECCCCSEEEEEEEEECTTSCEEECCCEE--EEEETTEEEEEEECSS-CCHHHHHHHH
T ss_pred hhhHHHHHhcc-----CceEEEeeeccccccccceeeecccceeeeeceee--ccccccceeeeeeccc-cccchhhhhh
Confidence 66654433222 35799999999888999999999888776542211 111221 222334554 7899999999
Q ss_pred HHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000086 331 QAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2304)
Q Consensus 331 e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~pL~~ 398 (2304)
+.+.++++++++.|..++||+++ ++++||+|+|||++++++++..++|+|+++.+++.++|.||+.
T Consensus 130 ~~~~~~~~~l~~~g~~~~~~~~~--~~~~~v~Evn~Rp~~~g~~~~~~~~~s~~e~~~ra~lglpl~~ 195 (198)
T d3etja3 130 EMLSAIMQELGYVGVMAMECFVT--PQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQ 195 (198)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCCC
T ss_pred hhhhHHHHhhhhcccchhheeec--CCcEEEEEEECCcccccceEeecccCCHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999 6789999999999999889999999999999999999999863
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=3.2e-22 Score=227.95 Aligned_cols=198 Identities=21% Similarity=0.212 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
+|..+|++++++|||||+|.. ++|.+++.++++++||||||||..|+||+||++|+|
T Consensus 1 sK~~~K~~l~~~gIptp~~~~-----------------------~~~~~e~~~~~~~ig~PvVvKP~~~~gs~Gv~~v~~ 57 (220)
T d1vkza3 1 SKVYAKRFMKKYGIRTARFEV-----------------------AETPEELREKIKKFSPPYVIKADGLARGKGVLILDS 57 (220)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESS
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------eCCHHHHHHHHHHcCCCEEEEeccccccccceeecc
Confidence 599999999999999999876 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCCCEEEee-ccc-cccccccceEEE-----eCCCCC
Q 000086 252 DDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH-SRD-CSVQRRHQKIIE-----EGPITV 320 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~----~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~-~Rd-cSvqrr~qKiie-----eaPa~~ 320 (2304)
.+++.++++.+.... ....+++|+|++| +|++++.+.++. ++..+. .++ ......+.+... ..|.+
T Consensus 58 ~~el~~a~~~~~~~~~~~~~~~~vliEe~i~g-~e~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 134 (220)
T d1vkza3 58 KEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVVNGR-NFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE- 134 (220)
T ss_dssp HHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEEETT-EEEECCCCEECCEEETTTEEEECSCSEEEECCC-
T ss_pred HHHHHHHhhhhccccccccccceEeeeccccc-ccceeEEEEeCC-EEEEcccccccccccccccccccccccccccCC-
Confidence 999999999886543 2457999999976 799999998753 333321 111 122222222211 11222
Q ss_pred CCHHHHHHHHHHHHHHHH-----HCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcC---CHHHHHHHHHc
Q 000086 321 APLETVKKLEQAARRLAK-----CVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEI---NLPAAQVAVGM 392 (2304)
Q Consensus 321 l~~e~~~~m~e~A~rlak-----alGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGV---DL~~~qL~iA~ 392 (2304)
.+.....+..+....+.+ .++++|..++||+++ ++++||||+|+|++. |.++.+.++ ||+++++++|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~d~~~~--~~gp~viEiN~R~G~--~~~~~~~~~~~~dl~~~~l~~a~ 210 (220)
T d1vkza3 135 IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLH--DGDPYILEYNVRLGD--PETEVIVTLNPEGFVNAVLEGYR 210 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEE--TTEEEEEEEESSCCT--THHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhhccceeEEEee--CCCEEEEEEECCCCC--CcceeeeecccccHHHHHHHHHc
Confidence 233333333333333222 345689999999999 788999999999963 444333333 99999999999
Q ss_pred CCCCCCc
Q 000086 393 GIPLWQI 399 (2304)
Q Consensus 393 G~pL~~i 399 (2304)
|.+|+.+
T Consensus 211 g~~l~~~ 217 (220)
T d1vkza3 211 GGKMEPV 217 (220)
T ss_dssp TSCCCCC
T ss_pred CCCcCcC
Confidence 9998753
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=2e-22 Score=232.85 Aligned_cols=181 Identities=9% Similarity=0.014 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..+|++++++|||+|.+.. .++++||||||||+.|+||+|+++|+|
T Consensus 1 DK~~~k~~l~~~Gip~P~~~~--------------------------------~~~~i~~PvVVKP~~g~gs~Gv~~v~~ 48 (238)
T d2r7ka2 1 ERSLEGKLLREAGLRVPKKYE--------------------------------SPEDIDGTVIVKFPGARGGRGYFIASS 48 (238)
T ss_dssp CHHHHHHHHHHTTCCCCCEES--------------------------------SGGGCCSCEEEECSCCCC---EEEESS
T ss_pred CHHHHHHHHHHCCCCCccccc--------------------------------CHhHCCCCEEEEECCCCCCCCeEEeCC
Confidence 899999999999999997332 346799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC-----CcEEEEEeccccceeeEEEEEcCCCCEE-------------Eeeccccccccccc---
Q 000086 252 DDEVRALFKQVQGEVPG-----SPIFIMKVASQSRHLEVQLLCDQYGNVA-------------ALHSRDCSVQRRHQ--- 310 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~~-----~~i~VEeyI~g~reieVqvl~D~~G~vi-------------~l~~RdcSvqrr~q--- 310 (2304)
.+++.++++.+.++... .++++|+|++| .+++++++.+..+..+ ....+.|..+.++.
T Consensus 49 ~~el~~a~~~~~~~~~~~~~~~~~v~vEe~i~G-~e~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (238)
T d2r7ka2 49 TEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNIN 127 (238)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEeecC-ceEEEEEeecccccceEEEeeccCCccEEEEEEEcCHHheeccCcc
Confidence 99999999998765432 47999999987 5777776655433222 12233333343332
Q ss_pred --eEEEeCCCCCCCHHHHHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCC
Q 000086 311 --KIIEEGPITVAPLETVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEIN 382 (2304)
Q Consensus 311 --KiieeaPa~~l~~e~~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVD 382 (2304)
......|+..++++..+++.+.+.++++++ ||.|++++||++|+ +|++||+|||||++|++++.. .|.+
T Consensus 128 ~~~~~~~~~~~~l~~~~~~~i~~~~~~i~~~l~~~~~~~~~G~~~ve~~~~~-dg~~~viEinpR~~G~~~~~~--~~~~ 204 (238)
T d2r7ka2 128 PSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSFM--NGGP 204 (238)
T ss_dssp CCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGGT--TCCT
T ss_pred ccCccccccCccccHHHHHHHHHHHHHHHHHHHHhcccCccccccHhhHhhc-CCCEEEEEEECCCCCCCccee--ccCC
Confidence 333345667788999999999999999998 89999999999995 788999999999999988764 4555
Q ss_pred HHHHHH
Q 000086 383 LPAAQV 388 (2304)
Q Consensus 383 L~~~qL 388 (2304)
++.++.
T Consensus 205 ~~~~~~ 210 (238)
T d2r7ka2 205 YSFLYN 210 (238)
T ss_dssp THHHHH
T ss_pred CCHHHH
Confidence 555544
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.85 E-value=3.2e-21 Score=217.31 Aligned_cols=199 Identities=16% Similarity=0.250 Sum_probs=154.1
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCH
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~ 252 (2304)
|+.+|++++++|||||+|.. +...-+. ....+++....+.+|||+||||..|+||+||.+|+|.
T Consensus 1 K~~tk~~~~~~Giptp~~~~-------------~~~~~~~---~~~~~~~~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~~ 64 (210)
T d1iowa2 1 KLRSKLLWQGAGLPVAPWVA-------------LTRAEFE---KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 64 (210)
T ss_dssp HHHHHHHHHHTTCCBCCEEE-------------EEHHHHH---HCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSG
T ss_pred CHHHHHHHHHcCCCCCCeEE-------------Eechhhc---ccchHHHHHHHHhcCCCEEEeeccccCceecccccch
Confidence 88999999999999999875 0000000 1123455566778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccc---eEEEeCCCCCCCHHHHHHH
Q 000086 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ---KIIEEGPITVAPLETVKKL 329 (2304)
Q Consensus 253 eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q---KiieeaPa~~l~~e~~~~m 329 (2304)
++|..+++.... .+..+++|+|++| +|+++.+++|..+..+.+...++....+.. ......+....+.....++
T Consensus 65 ~el~~~~~~~~~--~~~~vlve~~i~g-~e~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (210)
T d1iowa2 65 NALQDALRLAFQ--HDEEVLIEKWLSG-PEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANL 141 (210)
T ss_dssp GGHHHHHHHHTT--TCSEEEEEECCCC-CEEEEEEETTEECCCEEEECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHH
T ss_pred hhhhHHHHHhhc--cCccccccccccC-ceeEEEeecCcccceeEEecccceeeecccccccccccccccccccccchhH
Confidence 999999987653 3568999999976 899999998876666666666665443321 1222334455788999999
Q ss_pred HHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCc----ceehhhhcCCHHHHHHHHH
Q 000086 330 EQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 330 ~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGVDL~~~qL~iA 391 (2304)
.+.+.++++++|+.|.+++||++|. +|++||||+|+|++..+ +.....+|+|+.+++.++.
T Consensus 142 ~~~~~~~~~~~~~~g~~~vdf~~d~-~g~~~~lEiN~~pg~~~~s~~~~~~~~~Gi~~~~li~~ii 206 (210)
T d1iowa2 142 QALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 206 (210)
T ss_dssp HHHHHHHHHHHTCCSEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEEECC-CCCEEEEEEeCCCCCCCccHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999984 78999999999997542 3444568999998766553
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=7e-21 Score=218.09 Aligned_cols=197 Identities=17% Similarity=0.148 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
+|..+|++|+++|||||+|.. +++.+++.++++++|||+||||..++||+||++|++
T Consensus 1 SK~f~K~~~~~~~IPt~~~~~-----------------------~~~~~ea~~~~~~~~~P~VvK~~~~~~gkGv~i~~~ 57 (224)
T d1gsoa3 1 SKAFTKDFLARHKIPTAEYQN-----------------------FTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 57 (224)
T ss_dssp CHHHHHHHHHHTTCCBCCEEE-----------------------ESSSSHHHHHHHHHCSSEEEEC------CCEEEESS
T ss_pred CHHHHHHHHHHcCCCCCCceE-----------------------eCCHHHHHHHHHHcCCCEEEEeCCcccccceeeehh
Confidence 589999999999999999876 778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEEEEEcCCCCEEEee-cc------ccccccccceEEEeCCCCC
Q 000086 252 DDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQLLCDQYGNVAALH-SR------DCSVQRRHQKIIEEGPITV 320 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~----~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~-~R------dcSvqrr~qKiieeaPa~~ 320 (2304)
.+++.++++.+..... +..++||||+.| +|++++++.|+. +++.+. .+ |+....+.......+|++.
T Consensus 58 ~~e~~~a~~~~~~~~~~~~~~~~vliEefl~G-~E~s~~~i~dg~-~~~~~~~~~d~kr~~d~~~gp~tggmg~~~P~p~ 135 (224)
T d1gsoa3 58 LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDG-EEASFIVMVDGE-HVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPV 135 (224)
T ss_dssp HHHHHHHHTTTTCSCCTTCTTCCEEEEECCCE-EEEEEEEEEESS-CEEEEEEEEEEEEEETTTEEEEEEEEEEEESCTT
T ss_pred HHHHHHHHHHHHhcccccccCceEEeeccccc-ccceeEEEeccC-ceEeeecccccccccccccccccccccccCCCch
Confidence 9999999998876542 468999999977 799999999974 544332 11 2333444455566678887
Q ss_pred CCHHHHHHHH----HHHHHHHHHCC--ceeeeEEEEEEEccCCcEEEEEeccCCCC-CcceehhhhcCCHHHHHHHHHcC
Q 000086 321 APLETVKKLE----QAARRLAKCVN--YVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMG 393 (2304)
Q Consensus 321 l~~e~~~~m~----e~A~rlakalG--y~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGVDL~~~qL~iA~G 393 (2304)
.++.+.+++. +.+.+.+++.| |.|+.+++|+++ .+|++||||+|+|++. +...+-.....||.++++.++.|
T Consensus 136 ~~~~l~~~~~~~i~~~~~~~~~~~g~~~~G~l~~~~mit-~~G~p~vlE~N~R~Gdpe~~~il~~l~~dl~e~~~~~~~g 214 (224)
T d1gsoa3 136 VTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMID-KQGNPKVIEFNCRFGDLETQPIMLRMKSDLVELCLAACES 214 (224)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEE-TTCCEEEEEEESSCCTTTHHHHHHHBCSCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCceeeeeeccceeee-eCCCEEEEEEecCCCCCcceeehhhhcCCHHHHHHHHHhC
Confidence 7766655544 44556666666 579999999999 3667999999999962 33222223466999999999999
Q ss_pred C
Q 000086 394 I 394 (2304)
Q Consensus 394 ~ 394 (2304)
.
T Consensus 215 ~ 215 (224)
T d1gsoa3 215 K 215 (224)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.83 E-value=4.8e-20 Score=210.18 Aligned_cols=194 Identities=16% Similarity=0.123 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..+|++++++|||||+|.. + ... ....+.+.+.++.+|||+||||..|+||+||.+|+|
T Consensus 1 dK~~~k~~l~~~gi~tp~~~~----~---------~~~------~~~~~~~~~~~~~~g~P~VvKP~~g~~s~GV~~~~~ 61 (228)
T d1ehia2 1 DKALTKELLTVNGIRNTKYIV----V---------DPE------SANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN 61 (228)
T ss_dssp SHHHHHHHHHTTTCCCCCEEE----E---------CTT------GGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECS
T ss_pred CHHHHHHHHHHcCCCCCCEEE----E---------chh------hcChHHHHHHHHHhCCCEEEEEeccCCCccceeccc
Confidence 899999999999999999865 1 100 011223445677899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceE------------EEeCCCC
Q 000086 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPIT 319 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKi------------ieeaPa~ 319 (2304)
.+||..+++++... ...+++|+|+.+.+++++.++.++.+.+..+....+.......++ ....+..
T Consensus 62 ~~el~~~~~~~~~~--~~~~liee~i~g~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 139 (228)
T d1ehia2 62 AEEYTEALSDSFQY--DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPA 139 (228)
T ss_dssp HHHHHHHHHHHTTT--CSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSC
T ss_pred cchhhhhhhhhccc--ccccccceEEeccceEEEEEeeCCCcceeeeeeeeccccccccceeeeeccccccccccccchh
Confidence 99999999987644 468999999999899999888877655554444433222221111 1122344
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCC----cceehhhhcCCHHHHH
Q 000086 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQ 387 (2304)
Q Consensus 320 ~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge----hpvtE~vtGVDL~~~q 387 (2304)
.++++..+++.+.+.++++++|+.|.+++||++++ +|++||||+|+|++-. .|..-..+|+|+.++.
T Consensus 140 ~~~~~~~~~i~~~~~~~~~~lg~~~~~~iD~~~d~-~g~~~~lEvN~~Pg~~~~s~~~~~~~~~G~~~~~li 210 (228)
T d1ehia2 140 QLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLV 210 (228)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCeeeEEEEEcC-CCcEEEEEecCCCCCCcccHHHHHHHHhCCCHHHHH
Confidence 58899999999999999999999999999999984 7899999999998633 1333235899977653
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.82 E-value=5.6e-20 Score=207.22 Aligned_cols=185 Identities=18% Similarity=0.257 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..++.+++++|||||+|.. +++.++ ..+++++||+||||..||||+||.+|++
T Consensus 1 DK~~~~~~~~~~Gi~tP~~~~-----------------------~~~~~~--~~~~~~~fP~viKP~~gg~s~Gv~~v~~ 55 (211)
T d1e4ea2 1 DKSLTYIVAKNAGIATPAFWV-----------------------INKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNS 55 (211)
T ss_dssp SHHHHHHHHHHTTCBCCCEEE-----------------------ECTTCC--CCGGGSCSCEEEEESSCCTTTTCEEECS
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------ECchhH--HHHHhcCCCEEEeeccccCcchhccccc
Confidence 899999999999999999875 221111 2356899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeec------cccccccc--c----ceEEEeCCCC
Q 000086 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS------RDCSVQRR--H----QKIIEEGPIT 319 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~------RdcSvqrr--~----qKiieeaPa~ 319 (2304)
.+|+..+++.+... ...+++|+|+++ +++++.++.+..+.+..... ..|..... . .......|+.
T Consensus 56 ~~el~~~~~~~~~~--~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 132 (211)
T d1e4ea2 56 ADELDYAIESARQY--DSKILIEQAVSG-CEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD 132 (211)
T ss_dssp GGGHHHHHHHHTTT--CSSEEEEECCCS-EEEEEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS
T ss_pred cccchhhccccccc--cccccccccccc-ccceeeccCCCcceeeeeceeeccccchhhhhhhhhhcccccceeeecccc
Confidence 99999999988754 457999999976 89999999887654432111 11111110 0 0122344665
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCC--cceehh--hhcCCHHHH
Q 000086 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE--HPVTEW--IAEINLPAA 386 (2304)
Q Consensus 320 ~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge--hpvtE~--vtGVDL~~~ 386 (2304)
.++...+++.+++.++++++|+.|.+++||++++ +|++||+|+|||++.. ..+.++ ..|+|++++
T Consensus 133 -~~~~~~~~i~~~a~~~~~~lg~~g~~~id~~~~~-~g~~~viEiN~~pg~~~~s~~~~~~~~~G~~~~~l 201 (211)
T d1e4ea2 133 -LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD-NGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPEL 201 (211)
T ss_dssp -SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHH
T ss_pred -ccHhhhhhhHHHHHHHHHhhccCCeeEEEEEEcC-CCCEEEEEEeCCCCCCCccHHHHHHHHcCCCHHHH
Confidence 6788889999999999999999999999999994 7889999999888642 233333 479998765
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.4e-20 Score=204.85 Aligned_cols=189 Identities=14% Similarity=0.193 Sum_probs=127.2
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCH
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~ 252 (2304)
|+.++++++++|||+|+|.. +.+.+++.++++++|||+|+||..|+||+||.++.+.
T Consensus 1 K~~~~~~l~~~GipvP~t~~-----------------------~~~~~~~~~~~~~~g~P~ivKP~~g~~g~gv~~~~~~ 57 (192)
T d1uc8a2 1 KWATSVALAKAGLPQPKTAL-----------------------ATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXX 57 (192)
T ss_dssp HHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHH
T ss_pred CHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHhCCCEEEECCcCCcccceeecccc
Confidence 89999999999999999765 7899999999999999999999999999999877776
Q ss_pred HHHHHHHHH--HHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCCCCCHHHHHHHH
Q 000086 253 DEVRALFKQ--VQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLE 330 (2304)
Q Consensus 253 eEL~~a~~~--~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~~l~~e~~~~m~ 330 (2304)
++....... ........+++||+|+++. ++++.++..+ |.++....+.. ....+.............+ ....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~lvqefi~g~-~~~~~v~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 131 (192)
T d1uc8a2 58 XXXXXXXXXKEVLGGFQHQLFYIQEYVEKP-GRDIRVFVVG-ERAIAAIYRRS-AHWITNTARGGQAENCPLT---EEVA 131 (192)
T ss_dssp HC------------CTTTTCEEEEECCCCS-SCCEEEEEET-TEEEEEEEC---------------CEECCCC---HHHH
T ss_pred ccchhhHHHHHHHhccCCCCEEEEEecCCC-CeeEEEEEEC-CEEEeEEEeee-cccccccccccccccccch---hhhh
Confidence 666554442 2223345689999999874 4566666554 45554332221 1111110011111111112 2333
Q ss_pred HHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCCCCcceehhhhcCCHHHHHHHHHcCCC
Q 000086 331 QAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395 (2304)
Q Consensus 331 e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGVDL~~~qL~iA~G~p 395 (2304)
..+.++.++++ .|.++|||+++ ++++||||+|||++.++ ++..+|+|+++.+++.|++..
T Consensus 132 ~~~~~~~~~~~-~g~~~vD~~~~--~~~~~vlEiN~r~g~~~--~~~~~G~d~~~~ii~~a~~la 191 (192)
T d1uc8a2 132 RLSVKAAEAVG-GGVVAVDLFES--ERGLLVNEVNHTMEFKN--SVHTTGVDIPGEILKYAWSLA 191 (192)
T ss_dssp HHHHHHHHHTT-CSEEEEEEEEE--TTEEEEEEEETTCCCTT--HHHHHCCCHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhh-ccccceEEEec--CCCEEEEEEcCCCchhH--HHHHHCcCHHHHHHHHHHHhh
Confidence 44455555554 48889999999 67899999999998765 577899999999999998753
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=3.5e-19 Score=204.28 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECC
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2304)
||..+|++++++|||+|+... .++++||||||||..|+||+|+++|++
T Consensus 1 DK~~~k~~l~~~Gip~P~~~~--------------------------------~~~~i~~P~IVKP~~g~gs~Gv~~v~~ 48 (235)
T d2r85a2 1 DRNLERKWLKKAGIRVPEVYE--------------------------------DPDDIEKPVIVKPHGAKGGKGYFLAKD 48 (235)
T ss_dssp SHHHHHHHHHHTTCCCCCBCS--------------------------------CGGGCCSCEEEEECC----TTCEEESS
T ss_pred CHHHHHHHHHHcCCCCchhhh--------------------------------CHHHcCCCEEEEECCCCCCCCeEEEec
Confidence 899999999999999998321 345789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC---CCCcEEEEEeccccceeeEEEEEcCCCCEEEeecc--------------ccccccccce---
Q 000086 252 DDEVRALFKQVQGEV---PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSR--------------DCSVQRRHQK--- 311 (2304)
Q Consensus 252 ~eEL~~a~~~~~~e~---~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~R--------------dcSvqrr~qK--- 311 (2304)
.+++.+.++.+.... ....+++|+|++| .++.++.+.+.......+... .+..++.+..
T Consensus 49 ~~e~~~~~~~~~~~~~~~~~~~~iiee~i~G-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (235)
T d2r85a2 49 PEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDIT 127 (235)
T ss_dssp HHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCC
T ss_pred hHHHHHHHHHHHhhhhhCCCcchhHHhhcCC-eEEEEEEeecccccceEEEEeecCCcceeeEEEeccceeEecccCCCC
Confidence 999999999886432 3568999999987 678888777653332221110 0111122111
Q ss_pred -EEEeCCCCCCCHHHHHHHHHHHHHHHHHC-----CceeeeEEEEEEEccCCcEEEEEeccCCCCCcceeh
Q 000086 312 -IIEEGPITVAPLETVKKLEQAARRLAKCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTE 376 (2304)
Q Consensus 312 -iieeaPa~~l~~e~~~~m~e~A~rlakal-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE 376 (2304)
.....|+..++.+..+++.+.+.++++++ |++|++++||++++ +|++||+|+|||++|+.++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~G~~~ve~~~~~-dg~~~viEiNpR~~Gg~~~~~ 197 (235)
T d2r85a2 128 YTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGTNIFV 197 (235)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGGGGGT
T ss_pred cceeeccCcccchhHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEEEcC-CCCEEEEEEeCCCCCCCccee
Confidence 11233555577788888888888888776 78999999999995 788999999999999877643
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=99.75 E-value=8.8e-19 Score=206.50 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=128.3
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccCC--------CCeEEEEEEEECCeEEEEEEEecceeeccccCCCCC
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1966 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~~--------a~~vVtG~arl~G~pVGViA~e~~~~~~~~padpa~ 1966 (2304)
....+|++|+. |+|+|||+|+.+.+ ++++|||+|+|+|+||+|+|+|+++.
T Consensus 58 gkltaReRI~~-----------LlD~gSf~E~~~l~~~~~~~~~~~~vV~G~g~i~G~~v~v~a~D~t~~---------- 116 (287)
T d1pixa2 58 GELTALQRIEK-----------LVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKL---------- 116 (287)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSCCSEEEEEEEETTEEEEEEEECTTTT----------
T ss_pred CCCCHHHHHHH-----------HcCCcchhhHHHHhhhccCCCCCCCceEEEeecccceEEEEEeccccc----------
Confidence 45788999997 89999999997644 67899999999999999999987655
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHH---HHcCCCCEEE
Q 000086 1967 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQPVFV 2043 (2304)
Q Consensus 1967 p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP~i~ 2043 (2304)
||+|++.+++|+.|++++|.++++|||+|+|++|+..+..++..+....+++++.. ++..++|+|+
T Consensus 117 -----------gGs~~~~~~~K~~r~~~lA~~~~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Is 185 (287)
T d1pixa2 117 -----------AGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIV 185 (287)
T ss_dssp -----------TTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEE
T ss_pred -----------cccchhhHHHHHHHHHHhhhhcCCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEE
Confidence 99999999999999999999999999999999998887766654444555666644 4557899999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccchhhh
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEI 2089 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i 2089 (2304)
+|+ +.+..||||.++. .++ +++++++++++.+|.-+-.+
T Consensus 186 vv~-G~~~gGgAy~~~~----~~~--i~~~~~a~i~~~Gp~vv~~~ 224 (287)
T d1pixa2 186 GIY-GTNPAGGGYHSIS----PTV--IIAHEKANMAVGGAGIMGGM 224 (287)
T ss_dssp EEC-SEEETHHHHHHHS----SSE--EEEETTCEEESCCCTTCCSC
T ss_pred Eec-CCccccceecccc----cee--EEecCCeEEEEECHHHhccc
Confidence 999 3445677885543 466 88999999999999755433
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=4e-17 Score=190.50 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=123.4
Q ss_pred ccccC----CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------------------CCCeEEEEE
Q 000086 1890 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------------------WARTVVTGR 1938 (2304)
Q Consensus 1890 ~~~P~----~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------------------~a~~vVtG~ 1938 (2304)
.++|. ..+.+|++|+. |||+|||.|+... .+.++|||+
T Consensus 22 ~vC~~C~~h~~ltaReRi~~-----------L~D~gsf~Ei~~~~~~~d~l~~~d~~~y~~~~~~~~~~tg~~d~vv~g~ 90 (263)
T d2f9yb1 22 EVCPKCDHHMRMTARNRLHS-----------LLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMK 90 (263)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------HSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEE
T ss_pred CCCcCCCCCCCcCHHHHHHH-----------HccCCceEEeCCCcccCCchhcccccccccchhhhccccCCCCceEEEE
Confidence 35665 66899999997 8999999998531 257999999
Q ss_pred EEECCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhh
Q 000086 1939 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 2018 (2304)
Q Consensus 1939 arl~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~ 2018 (2304)
|+|+|+||.|+++|+++. ||++++.+++|+.++++.|.+.++|+|+|.++.|..
T Consensus 91 G~i~G~~v~v~a~Dftv~---------------------gGS~g~~~~~Ki~~a~e~A~~~~lPlI~~~~sgG~r----- 144 (263)
T d2f9yb1 91 GTLYGMPVVAAAFEFAFM---------------------GGSMGSVVGARFVRAVEQALEDNCPLICFSASGGAR----- 144 (263)
T ss_dssp CEETTEECBEEEECTTST---------------------TTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBC-----
T ss_pred EEECCEEEEEEeeeehhh---------------------ccccccchhhHHhHHHHHHHHcCCCeEEEecCCCcc-----
Confidence 999999999999998877 999999999999999999999999999999999843
Q ss_pred hhhhHHH-----HHHHHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2019 LFEGILQ-----AGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2019 e~~gilk-----~ga~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+++... .....+..+....+|+|+++. |.+.||.++.... ..|+ ++++|+|.+++.||+-+
T Consensus 145 ~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~--g~~~GG~aa~~~~--~~d~--i~~~~~s~i~~aGP~vv 211 (263)
T d2f9yb1 145 MQEALMSLMQMAKTSAALAKMQERGLPYISVLT--DPTMGGVSASFAM--LGDL--NIAEPKALIGFAGPRVI 211 (263)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGGG--CCSE--EEECTTCBEESSCHHHH
T ss_pred cccccchhhcchhHHHHHHHHHhCCCceEEEec--CCcchHHHhhhhh--cCce--EeeecceeeeccCHHHH
Confidence 3333322 233445556778899999999 6677765443332 3466 88999999999999643
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=99.63 E-value=2.3e-16 Score=150.78 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=67.1
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l 754 (2304)
...+.|+|||||+|++|+|++||+|++||+|+++|+|||+++|+||.+|+|+++ +++|+.|++||+|++|
T Consensus 6 ~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i 76 (77)
T d1dcza_ 6 AGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp CCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred CCCCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence 345689999999999999999999999999999999999999999999999999 9999999999999987
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.62 E-value=2.3e-15 Score=175.09 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=117.7
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------CCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+.. .++.++|||+|+|+|+||.|+++|+++.
T Consensus 35 GkltaReRi~~-----------L~D~gsF~E~~~~~~~~~~~~~~~~~~~~~d~vv~G~G~I~G~~v~v~a~Dftv~--- 100 (258)
T d1xnya1 35 GKLTARERIDL-----------LLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVF--- 100 (258)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------HcCCCCCccccchhcccccccccccccCCCCeeEEEEEEECCEEEEEEechhhhh---
Confidence 46789999997 899999999842 2367999999999999999999998877
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHc--C
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRT--Y 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~--~ 2037 (2304)
||+|++..++|..|+++.|.+.++|||+|.|++|... .+....+..+.+++..+.. .
T Consensus 101 ------------------gGS~g~~~~~K~~r~~e~A~~~~lPlI~l~dsgGarm---~e~~~~~~~~~~~~~~~~~~s~ 159 (258)
T d1xnya1 101 ------------------GGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARI---QEGVASLGAYGEIFRRNTHASG 159 (258)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCG---GGTHHHHHHHHHHHHHHHHTTT
T ss_pred ------------------cCccchhhHHHHHHHHHHHHHcCCceEEEecCCCccc---CcccccccchhHHHHHHHHHcC
Confidence 9999999999999999999999999999999999433 2222333444555555444 3
Q ss_pred CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2038 KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.+|+|++|. +.++.|++|....+ .++ +++.++|++++.+|.-+
T Consensus 160 ~vP~I~vv~-G~~~gG~a~~~~~~---~~v--im~~~~a~i~~aGP~vv 202 (258)
T d1xnya1 160 VIPQISLVV-GPCAGGAVYSPAIT---DFT--VMVDQTSHMFITGPDVI 202 (258)
T ss_dssp TSCEEEEEC-SEEEGGGGHHHHHS---SEE--EEETTTCEEESSCHHHH
T ss_pred CCCEEEEEc-CCcChhHHHHHHhc---cch--hhcccceEEEecCHHHH
Confidence 599999999 33444555544332 244 77899999999999543
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=99.60 E-value=4.5e-15 Score=171.87 Aligned_cols=148 Identities=21% Similarity=0.211 Sum_probs=116.5
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------CCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+.. ..+.++|+|+|+|+|+||.|+++|+++.
T Consensus 36 GkltaRERI~~-----------LlD~gSF~E~g~~~~~~~~~~~~~~~~~~~dgvV~G~G~I~gr~v~v~a~Dftv~--- 101 (253)
T d1on3a1 36 GKQTARERLNN-----------LLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVM--- 101 (253)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCTTTTTTCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HcCCCCccccccccccchhhhhhhcccccCCcEEEEEEEEeceechhhhchhhhh---
Confidence 45889999997 899999999842 2377899999999999999999998876
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhH--HHHHHHHHHHHHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVENLRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~al~~~ 2037 (2304)
||++++..+.|+.++++.|.+.++|||+|.|+.|.. |+++. +...++++.++...
T Consensus 102 ------------------GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sgG~r-----~~eg~~~l~~~~~~~~~~~~l 158 (253)
T d1on3a1 102 ------------------GGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGAR-----IQEGIDSLSGYGKMFFANVKL 158 (253)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBC-----GGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------cccceecccchhhhhHHHHhhcCCCeEEEEecCCCc-----ccccceeccccceehHHHHHH
Confidence 999999999999999999999999999999998833 33333 33345555544443
Q ss_pred --CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2038 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2038 --~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.+|+|+++. |.+.||+...... .|+ +++.++|.+++.+|+-+
T Consensus 159 s~~vP~i~vv~--Gp~~GG~a~~~~~---~d~--vi~~~~a~i~~aGP~vV 202 (253)
T d1on3a1 159 SGVVPQIAIIA--GPCAGGASYSPAL---TDF--IIMTKKAHMFITGPQVI 202 (253)
T ss_dssp TTTSCEEEEEE--EEEESGGGHHHHH---SSE--EEEETTCEEESSCHHHH
T ss_pred hccceEEEEEe--cCcccceeeccch---hhh--eeccccceEEecCcchh
Confidence 489999999 4455544333332 366 67789999999999654
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=3.9e-15 Score=167.66 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=131.4
Q ss_pred CCHHHHHHhcCHHH--HHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecC
Q 000086 162 PPATSMAALGDKIG--SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2304)
Q Consensus 162 Ps~eam~~lgDK~~--sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2304)
++++++..|.||.. .+.+....++++|.+-... ..+..+..+.....+||+|+||..
T Consensus 1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~---------------------~~~~~~~~~~~~~~~~PvVvKP~~ 59 (206)
T d1i7na2 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIE---------------------QTYYPNHREMLTLPTFPVVVKIGH 59 (206)
T ss_dssp SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCC---------------------CEEESSGGGGSSCCCSSEEEEESS
T ss_pred CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceee---------------------cccccchhHHhhhcCCceEEecCC
Confidence 47899999999954 3444444444444332200 011112234455679999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccceEEEeCCCC
Q 000086 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2304)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~qKiieeaPa~ 319 (2304)
|+||+||.+|++.+++..+++.+... +.+++||+|+++.+++.|.++++ .++....+...-..+........+..
T Consensus 60 g~~g~Gv~~v~~~~~l~~~~~~~~~~--~~~~~vqe~I~~~~dirv~vig~---~~~~~~~~~~~~~~~~n~~~~~~~~~ 134 (206)
T d1i7na2 60 AHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKTNTGSAMLEQI 134 (206)
T ss_dssp CSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCCEEEEEEEEEETT---EEEEEEEESSCTTTSCSCCCSSEEEE
T ss_pred CCCCCCeEEEeecchhhhHHHHHhhc--cCeEEEEEeecccceEEEEEEec---ceeEEEeeccccccccccccCccccc
Confidence 99999999999999999999888765 46899999998778999999864 44444444333222211111111111
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEecc---CCCCCcceehhhhcCCHHHHHHHHHc
Q 000086 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP---RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2304)
Q Consensus 320 ~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINp---RlqgehpvtE~vtGVDL~~~qL~iA~ 392 (2304)
... +++.+.+.+.++.++..|.+.|||+++ .+|++||+|+|+ .+.+++.........|++...++.+|
T Consensus 135 ~~~----~~~~~~~~~~~~~~~~~~~~gvD~~~~-~dG~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~~~l 205 (206)
T d1i7na2 135 AMS----DRYKLWVDACSEMFGGLDICAVKAVHG-KDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 205 (206)
T ss_dssp CCC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-TTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCC----hHHHHHHHHHhhhccccceeeEEEEEc-CCCCEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 122 345566677777888889999999998 488999999996 44455555544445666666665544
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=8e-16 Score=147.60 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=65.5
Q ss_pred CCeeeeCCCceeE-------EEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000086 687 PSKLVAETPCKLL-------RYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2304)
Q Consensus 687 p~~l~APmPGkvv-------~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~ 755 (2304)
++.|+|||+|++. +++|++||+|++||+|++||+|||+++|+||.+|+|+.+ +++|+.|+.||+|+.|+
T Consensus 4 g~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 4 GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 4579999999995 688999999999999999999999999999999999999 99999999999999985
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=1.6e-14 Score=167.05 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=115.6
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceeccc---------------CCCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~---------------~~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+.. .+++++|||+|+|+|+||.|+++|++++
T Consensus 33 GkltaReRi~~-----------L~D~gSF~E~~~~~~~~~~~~~~~~~~~~~dgvV~G~G~I~G~~v~v~a~D~t~~--- 98 (251)
T d1vrga1 33 GKLTAWERLEL-----------LLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVM--- 98 (251)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCGGGGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HcCCCCcccccchhccccchhhhccccccccceEEEEEEEccEEEEEeeehhhhh---
Confidence 46789999997 899999999842 2367999999999999999999988766
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHH--HHcC
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN--LRTY 2037 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a--l~~~ 2037 (2304)
||++++..++|++|++++|.++++|+|+|.|+.|.... +....+...+++..+ ....
T Consensus 99 ------------------gGs~g~~~~~K~~r~~e~A~~~~~P~I~~~dsgG~r~~---e~~~~l~~~~~~~~~~~~~s~ 157 (251)
T d1vrga1 99 ------------------GGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQ---EGVDALAGYGEIFLRNTLASG 157 (251)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG---GTHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------hcccchHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccc---ccccccccchHHHHHHHHHCC
Confidence 99999999999999999999999999999999885422 111222334444443 3356
Q ss_pred CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2038 KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2038 ~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
.+|+|++|. +.+++|+||....+ .+. +++.++|++++.+|.-+
T Consensus 158 ~iP~I~vv~-G~~~gG~a~~~~~~---d~~--im~~~~a~i~~aGp~vv 200 (251)
T d1vrga1 158 VVPQITVIA-GPCAGGAVYSPALT---DFI--VMVDQTARMFITGPNVI 200 (251)
T ss_dssp TSCEEEEEE-EEEBGGGGHHHHHS---SEE--EEETTTCBCBSSCHHHH
T ss_pred CCCEEEEEc-cCccccceehhhhC---ceE--EEEccceeEEecCchhh
Confidence 799999999 33444555554433 233 66789999998888543
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=3.4e-14 Score=164.74 Aligned_cols=149 Identities=21% Similarity=0.191 Sum_probs=116.1
Q ss_pred CCCChHHHhhcccCCCCCcccccccCCCceecccC---------------CCCeEEEEEEEECCeEEEEEEEecceeecc
Q 000086 1895 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1959 (2304)
Q Consensus 1895 ~~yD~r~~i~~~~d~~~~~~~gl~D~gsF~E~~~~---------------~a~~vVtG~arl~G~pVGViA~e~~~~~~~ 1959 (2304)
....+|++|+. |||+|||.|+.+. .+.++|||+|+|+|++|.|+++|+++.
T Consensus 36 GkltaReRi~~-----------L~D~gsF~E~~~l~~~~~~~~~~~~~~~~~d~vV~G~G~I~G~~v~v~a~Dft~~--- 101 (258)
T d2a7sa1 36 GKLTARERIYA-----------LLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVF--- 101 (258)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCSTTCTTCCCTTTTEEEEEEESSSSEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------HcCCCCcEEehhcccccchhhhccccccccccceeEEEEeccceEEEecccceEe---
Confidence 46789999997 8999999998532 367999999999999999999998876
Q ss_pred ccCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhhccCCCEEEEecCCCCCCchhhhhhhHH--HHHHHHHH--HHH
Q 000086 1960 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVE--NLR 2035 (2304)
Q Consensus 1960 ~padpa~p~s~~~~~~~~gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~--al~ 2035 (2304)
||++++..++|+.|+++.|.+.++|+|+|.|+.|.. |++++. ..++++.. ...
T Consensus 102 ------------------gGS~g~~~g~K~~ra~e~A~~~~lP~I~l~dsgGar-----~~eg~~~~~~~~~~~~~~~~~ 158 (258)
T d2a7sa1 102 ------------------GGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGAR-----IQEGVVSLGLYSRIFRNNILA 158 (258)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBC-----GGGCTHHHHHHHHHHHHHHHH
T ss_pred ------------------CCccchhhhhHHHHHHHHHHhcCCceEEEeccCCcc-----cccccccccchhhHHHHHHHH
Confidence 999999999999999999999999999999999943 233222 22333333 244
Q ss_pred cCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2036 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2036 ~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
...+|+|++|+ +.++.|++|....+ .++ +++.++|.+++.+|+-+
T Consensus 159 ~~~vP~I~~v~-G~~~gG~a~~~~~~---d~~--vm~~~~a~i~~aGP~vV 203 (258)
T d2a7sa1 159 SGVIPQISLIM-GAAAGGHVYSPALT---DFV--IMVDQTSQMFITGPDVI 203 (258)
T ss_dssp TTTSCEEEEEC-SCCBSGGGHHHHHS---SEE--EEEBTTBBCBSSCHHHH
T ss_pred cCCCCEEEEEe-cCcccHHHHHHHhc---cce--EeecCceEEEccChhHH
Confidence 56799999999 34455566654433 233 67799999999999654
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.48 E-value=2e-14 Score=137.84 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=67.0
Q ss_pred eeeC---CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCC
Q 000086 690 LVAE---TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPS 760 (2304)
Q Consensus 690 l~AP---mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~ 760 (2304)
++.| +.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+.|+.|++|+.|++++.+
T Consensus 4 i~~P~~g~~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~a 78 (79)
T d1iyua_ 4 IRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78 (79)
T ss_dssp EECCCCSSEEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCSC
T ss_pred EECCCCCCCEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCccC
Confidence 5556 789999999999999999999999999999999999999999998 9999999999999999998765
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=3e-13 Score=129.95 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=61.7
Q ss_pred CceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 695 PGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|+.|+.++.
T Consensus 14 ~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg~ 79 (80)
T d1qjoa_ 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCCC
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCcC
Confidence 35999999999999999999999999999999999999999998 999999999999999997653
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=99.30 E-value=7.7e-13 Score=126.60 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=61.2
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|++|++|+.|+..
T Consensus 14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~ 78 (79)
T d1ghja_ 14 ADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp SCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred cEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence 469999999999999999999999999999999999999999888 9999999999999999764
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.2e-12 Score=127.41 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=63.3
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPS 760 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~~ 760 (2304)
.-|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|+.|++|+.|+.++..
T Consensus 17 ~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~~ 84 (87)
T d1k8ma_ 17 REVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALK 84 (87)
T ss_dssp CCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCCT
T ss_pred eeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcCCcc
Confidence 359999999999999999999999999999999999999999988 9999999999999999987653
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.29 E-value=2.6e-13 Score=130.12 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=60.9
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
.-|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|+.|++|+.|+.+
T Consensus 14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~ 78 (80)
T d1laba_ 14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 78 (80)
T ss_dssp CSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred eeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 359999999999999999999999999999999999999999988 9999999999999998765
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=99.21 E-value=1.6e-12 Score=125.17 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=62.3
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2304)
.+|+|++|+|++||.|++||+|++||+|||++++.||.+|+|+++ +++|+.|..|++|+.|+.++.
T Consensus 14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g~ 80 (81)
T d1gjxa_ 14 ENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGT 80 (81)
T ss_dssp SSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSCC
T ss_pred cEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEecccC
Confidence 468999999999999999999999999999999999999999988 999999999999999987653
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=8.5e-13 Score=126.44 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=60.8
Q ss_pred CCceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 694 mPGkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
..|+|++|+|++||+|++||+|++||+|||.++|.||.+|+|.++ +++|+.|..|++|+.|+..
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~eg 79 (80)
T d1pmra_ 15 ADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREG 79 (80)
T ss_dssp SCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCCC
T ss_pred cEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeCC
Confidence 459999999999999999999999999999999999999999988 9999999999999999743
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=8.8e-11 Score=136.70 Aligned_cols=199 Identities=18% Similarity=0.185 Sum_probs=138.5
Q ss_pred CccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHHHHH
Q 000086 1592 ALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTD 1671 (2304)
Q Consensus 1592 ~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ra~e 1671 (2304)
|+......++|+ +|.|+...-| .+||++...+ +|++|.|+|||+.+++|++++...+|..|.++
T Consensus 36 d~r~~i~~i~D~-------sf~E~~~~~g---~~~itg~ari------~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~ 99 (271)
T d2a7sa2 36 DMHEVITRLLDD-------EFLEIQAGYA---QNIVVGFGRI------DGRPVGIVANQPTHFAGCLDINASEKAARFVR 99 (271)
T ss_dssp CTHHHHHHHSSS-------CCEEESTTSC---TTEEEEEEES------SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC-------cchhhccccc---cceeEEEEEE------CCeEEEEEeccccccCCCcCHHHHHHHHHHHH
Confidence 444445555554 4777765555 3489999876 99999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEee
Q 000086 1672 LACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSI 1751 (2304)
Q Consensus 1672 ~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i 1751 (2304)
+|.+.++|+|+|.++.|+.+|...+-...+ . .| +++ +
T Consensus 100 lc~~~~iPlv~l~dtpGf~~G~~~E~~g~~--~--------~g-----------a~~---~------------------- 136 (271)
T d2a7sa2 100 TCDCFNIPIVMLVDVPGFLPGTDQEYNGII--R--------RG-----------AKL---L------------------- 136 (271)
T ss_dssp HHHHTTCCEEEEEEECCBCCCHHHHHHCHH--H--------HH-----------HHH---H-------------------
T ss_pred HHHHhCCceEEeechhhhhhhccHHHhhHH--H--------HH-----------HHH---H-------------------
Confidence 999999999999999999999443211110 0 00 000 0
Q ss_pred ccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc-----cCEEEEecCcceEecChHHHHHhh-c
Q 000086 1752 VGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL-----GMRCIQRLDQPIILTGFSALNKLL-G 1825 (2304)
Q Consensus 1752 ~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l-----gd~~I~~~~~~i~ltG~~al~~~l-G 1825 (2304)
+.-+-..+|.||+++++++|+| |.++. +|++++-+++.+.+-||.....++ .
T Consensus 137 ---------------------~a~a~~~vP~isvi~~~~~G~~-~~am~~~~~~~d~~~AwP~A~igvMgpegaa~v~~~ 194 (271)
T d2a7sa2 137 ---------------------YAYGEATVPKITVITRKAYGGA-YCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYR 194 (271)
T ss_dssp ---------------------HHHHHCCSCEEEEEEEEEEHHH-HHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTT
T ss_pred ---------------------HHHHhCCCCeEEEEeCCccchh-hhhhcccccccceEEEecceeEeecCHHHHHHHHHH
Confidence 0000123799999999999864 45443 599999999999999998655543 3
Q ss_pred ccccccc------------------cccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCCC
Q 000086 1826 REVYSSH------------------MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1872 (2304)
Q Consensus 1826 ~~vy~s~------------------~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~ 1872 (2304)
+++.... ++...+-.....|.+|-|+ |-.+--..+.++|..+....
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VI-dP~dTR~~L~~~L~~~~~k~ 258 (271)
T d2a7sa2 195 QQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVI-PPSHTRGYIGTALRLLERKI 258 (271)
T ss_dssp TTTTGGGTSSCCTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEEC-CGGGHHHHHHHHHHHTTTCC
T ss_pred HhhhhhhhcccchHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeE-CHHHHHHHHHHHHHHHHccc
Confidence 3221110 1122333334679999988 46777777888888775443
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=4.1e-11 Score=119.78 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=59.5
Q ss_pred ceeEEEEccCCCEEccCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000086 696 CKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2304)
Q Consensus 696 Gkvv~~~V~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2304)
|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++ +++|+ .|..|++|+.|..++
T Consensus 20 g~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~~ 84 (102)
T d1y8ob1 20 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (102)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred EEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999888 99997 699999999996544
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.09 E-value=1.6e-10 Score=133.79 Aligned_cols=203 Identities=18% Similarity=0.149 Sum_probs=144.3
Q ss_pred CCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHH
Q 000086 1588 PKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFL 1667 (2304)
Q Consensus 1588 ~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ 1667 (2304)
..|-|+.+..+.++|. + .+.|+...-|. +||++..++ +|++|.|+|||+++.+|++.+...+|..
T Consensus 26 ~~~yD~r~~i~~~~D~--~----~f~E~~~~~g~---~vitg~ari------~G~~vgvia~~~~~~~G~~~~~~a~Ka~ 90 (263)
T d1xnya2 26 NQPYDMHSVIEHVLDD--A----EFFETQPLFAP---NILTGFGRV------EGRPVGIVANQPMQFAGCLDITASEKAA 90 (263)
T ss_dssp SSCCCHHHHHHHHSGG--G----CCEEESTTSCT---TEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCC--C----EEEeeccccCC---cEEeeeeee------ccceEEEEecccceecCCcchhhHHHHH
Confidence 3344566666667776 4 68898877763 488888887 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeE
Q 000086 1668 AVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWV 1747 (2304)
Q Consensus 1668 ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~ 1747 (2304)
+.+++|.+.+||+|+|.++.|+.+|...|-...++ ...++ +.
T Consensus 91 ~fi~lc~~~~iPli~l~d~pGf~~G~~~E~~g~~~---------------------~ga~~---~~-------------- 132 (263)
T d1xnya2 91 RFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIR---------------------RGAKL---IF-------------- 132 (263)
T ss_dssp HHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHH---------------------HHHHH---HH--------------
T ss_pred HHHHHHHHhCCceEEeecccccccchhHHHHhHHH---------------------HHHHH---HH--------------
Confidence 99999999999999999999999995433211100 00010 00
Q ss_pred EEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc-----cCEEEEecCcceEecChHHHHH
Q 000086 1748 VDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL-----GMRCIQRLDQPIILTGFSALNK 1822 (2304)
Q Consensus 1748 i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l-----gd~~I~~~~~~i~ltG~~al~~ 1822 (2304)
| + +-..+|.|+||++.+.|+ ||.++. +|++++-+++.+.+-||....+
T Consensus 133 ----------------------a--~--a~~~vPkitvi~~~~~Gg-a~~~m~~~~~~~d~~~awP~a~~gvm~pe~aa~ 185 (263)
T d1xnya2 133 ----------------------A--Y--AEATVPLITVITRKAFGG-AYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVN 185 (263)
T ss_dssp ----------------------H--H--HHCCSCEEEEEEEEEEHH-HHHHTTCGGGTCSEEEECTTCEEESSCHHHHHH
T ss_pred ----------------------H--H--HccCCCeEEEEecCcccc-ceeccCCcccCCcEEEEcchhhhhccCHHHHHH
Confidence 0 0 012379999999999885 555543 5899999999999999987766
Q ss_pred hhccccccc----c------------cccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCC
Q 000086 1823 LLGREVYSS----H------------MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871 (2304)
Q Consensus 1823 ~lG~~vy~s----~------------~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~ 1871 (2304)
++-+.--.+ . +++..+-.....|.+|-|. |-.+--..|.++|..+...
T Consensus 186 il~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~aA~~g~iD~VI-dP~dTR~~L~~~L~~l~~k 249 (263)
T d1xnya2 186 ILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVI-MPSDTRRHIVRGLRQLRTK 249 (263)
T ss_dssp HHTHHHHHSCCTTCSSSHHHHHHHHHHHHSSSHHHHHHTSSSEEC-CGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcCHHHHHHcccCCccc-CHHHHHHHHHHHHHHHhcc
Confidence 553221100 0 1234444445789999988 4566677777777766443
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=3.6e-10 Score=130.99 Aligned_cols=206 Identities=18% Similarity=0.196 Sum_probs=149.2
Q ss_pred CCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHH
Q 000086 1588 PKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFL 1667 (2304)
Q Consensus 1588 ~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~ 1667 (2304)
..|-|+.+..+.++|. + .+.|....-|.+ ||+|..++ +|++|.|+||+..+++|++.+...+|..
T Consensus 28 ~~~yd~r~~i~~i~D~--~----~~~E~~~~~~~~---~v~g~~r~------~G~~vgvian~~~~~~G~~~~~~a~Kaa 92 (264)
T d1vrga2 28 NKGYDVRDVIKRVVDH--G----EFFEVQPYFAKN---IVIGFARI------QGKTVGIVANQPSVLAGVLDIDSSDKAA 92 (264)
T ss_dssp TSCCCTHHHHHHHSGG--G----CCEEESTTSSTT---EEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHH
T ss_pred CCCCcHHHHHHHhCcC--c----eeeeecCCCCCC---eEEEEEEe------cCceEEEEeccccccccchhhhhHHHHH
Confidence 4445666677777776 4 588888777754 88888887 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeE
Q 000086 1668 AVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWV 1747 (2304)
Q Consensus 1668 ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~ 1747 (2304)
+.+++|-+.+||+|+|.++.|+.+|...|-...++ .-+++
T Consensus 93 ~fi~lc~~~~iPli~l~DtpGf~~G~~~E~~g~~~---------------------~ga~~------------------- 132 (264)
T d1vrga2 93 RFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIR---------------------HGAKL------------------- 132 (264)
T ss_dssp HHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHH---------------------HHHHH-------------------
T ss_pred HHHHHHHHhCCceEEEeecccccccHHHHHHhHHH---------------------HHHHH-------------------
Confidence 99999999999999999999999995433211100 00000
Q ss_pred EEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhc-----ccCEEEEecCcceEecChHHHHH
Q 000086 1748 VDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR-----LGMRCIQRLDQPIILTGFSALNK 1822 (2304)
Q Consensus 1748 i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~-----lgd~~I~~~~~~i~ltG~~al~~ 1822 (2304)
+ ++-+-..+|.|++++|++.|+|+ +++ -+|++++-+++.+.+-||.....
T Consensus 133 ---------------------~---~a~a~~~vP~i~viir~~yG~g~-~am~~~~~~~d~~~awP~a~~~vm~pe~aa~ 187 (264)
T d1vrga2 133 ---------------------L---YAYSEATVPKITVILRKAYGGAY-IAMGSKHLGADMVLAWPSAEIAVMGPEGAAN 187 (264)
T ss_dssp ---------------------H---HHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEESSCHHHHHH
T ss_pred ---------------------H---HHHhcCCCCEEEEEeCCcccHHh-hhccCCccCCCeeeeccceeEEecCHHHhhh
Confidence 0 00011237999999999998654 444 38999999999999999987666
Q ss_pred hhccccccc---------------ccccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCCCCC
Q 000086 1823 LLGREVYSS---------------HMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGG 1874 (2304)
Q Consensus 1823 ~lG~~vy~s---------------~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~~~~ 1874 (2304)
++-+.-... .++...+-.....|.+|-|. |-.+--..|.++|+.+......
T Consensus 188 v~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VI-dP~dTR~~L~~~Le~l~~k~e~ 253 (264)
T d1vrga2 188 IIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVI-DPRETRKYIMRALEVCETKVEY 253 (264)
T ss_dssp HHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEEC-CGGGHHHHHHHHHHHHTTCCCC
T ss_pred hhhhhhhhhhhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeE-CHHHHHHHHHHHHHHHhccccc
Confidence 543211000 12334444455789999999 5677788888888877654433
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.88 E-value=2.5e-09 Score=125.65 Aligned_cols=209 Identities=14% Similarity=0.137 Sum_probs=140.8
Q ss_pred CCCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEecccc-------------
Q 000086 1588 PKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK------------- 1654 (2304)
Q Consensus 1588 ~~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~------------- 1654 (2304)
..+-|+.+..+.++|. + .|.|+...-|. +||+|...+ +|++|.|+|||.++.
T Consensus 30 ~~~yd~r~iI~~l~D~--~----~f~E~~~~~g~---~~vtg~ari------~G~~vgviAn~~~~~~~~~~~~a~~~~~ 94 (299)
T d1pixa3 30 KRAYDIYNVIARLFDN--S----ELHEYKKGYGP---EMVTGLAKV------NGLLVGVVANVQGLLMNYPEYKAAGSVG 94 (299)
T ss_dssp TSCCCHHHHHHTTSGG--G----BCEESSTTSST---TEEEEEEEE------TTEEEEEEEECCSEETTCCTTSCTTCCE
T ss_pred CCCCCHHHHHHHhccC--C----EeEEeccccCC---ceEEEEEEE------CCeEEEEEeecCccccccccccccCCcC
Confidence 4445677778888887 5 68898877663 489999877 999999999999886
Q ss_pred -CCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhcccee
Q 000086 1655 -AGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVI 1733 (2304)
Q Consensus 1655 -~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~ 1733 (2304)
+|++.+...+|..|.+++|-+.++|+|+|.++.|+.++...|-...++ ...++
T Consensus 95 ~~G~l~~~~a~K~~rfi~lc~~~~iPlv~l~D~pGf~~g~~~E~~g~~r---------------------~ga~~----- 148 (299)
T d1pixa3 95 IGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLG---------------------LGQSL----- 148 (299)
T ss_dssp ETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHH---------------------HHHHH-----
T ss_pred CCCccCHHHHHHHHHHHHHHHHcCCeEEEEEeCCCcccchHHHhhhHHH---------------------HHHHH-----
Confidence 999999999999999999999999999999999999985433221110 00110
Q ss_pred eeccccccCceeeEEEeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc-----cCE--EEE
Q 000086 1734 AHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL-----GMR--CIQ 1806 (2304)
Q Consensus 1734 ~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l-----gd~--~I~ 1806 (2304)
+. ++ +-..+|.||+++|+++|+|+| ++. .++ .+.
T Consensus 149 -----------------------------~~-------a~--~~~~VP~isvi~r~~~G~a~~-am~g~~~~~~~~~~~a 189 (299)
T d1pixa3 149 -----------------------------IY-------SI--QTSHIPQFEITLRKGTAAAHY-VLGGPQGNDTNAFSIG 189 (299)
T ss_dssp -----------------------------HH-------HH--HTCCCCEEEEECSEEETTHHH-HTTCTTCTTTEEEEEE
T ss_pred -----------------------------HH-------HH--HhhcceeEEEEeccccccccc-ccccCccCcccceecC
Confidence 00 00 012379999999999997654 443 243 445
Q ss_pred ecCcceEecChHHHHH-hhcccccc--------------------cccccCcceeecccCceEEEecCcHHHHHHHHHHH
Q 000086 1807 RLDQPIILTGFSALNK-LLGREVYS--------------------SHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1807 ~~~~~i~ltG~~al~~-~lG~~vy~--------------------s~~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.+.+.+.+-|+..--. +..+++-. .-..-+++-.....|.+|-|. |-.+--..|..||
T Consensus 190 wP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~II-DP~dTR~~L~~~L 268 (299)
T d1pixa3 190 TAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIV-DMNKIRGYVEAFT 268 (299)
T ss_dssp CTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEEC-CTTTHHHHHHHHH
T ss_pred CCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeE-CHHHHHHHHHHHH
Confidence 6778888887753222 22211100 000114444455789999988 4677777777888
Q ss_pred hcCCCCCCCCCC
Q 000086 1866 SYVPPHIGGALP 1877 (2304)
Q Consensus 1866 sylP~~~~~~~p 1877 (2304)
..+..+....+|
T Consensus 269 e~~~~~~~~~~p 280 (299)
T d1pixa3 269 EAAYQNPESICP 280 (299)
T ss_dssp HHHTTSCSCCCC
T ss_pred HHHHhCccccCC
Confidence 766554433333
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=98.86 E-value=4.4e-09 Score=121.64 Aligned_cols=202 Identities=19% Similarity=0.205 Sum_probs=143.5
Q ss_pred CCcCccccccccccCCCCCCcCCccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEeccccCCCcchHHHHHHHH
Q 000086 1589 KDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLA 1668 (2304)
Q Consensus 1589 ~~~~~~~~~el~~~~~~~~~~~~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~~GS~g~~~~~k~~r 1668 (2304)
.|=|+.+....++|. + +|.|++..-| .+||++..+| +|++|-|+|||..+.+|++.+...+|..|
T Consensus 29 ~~yd~r~~i~~~~D~--~----~f~E~~~~~g---~~~vtg~ari------~G~~vgvian~~~~~~G~~~~~~a~Kaar 93 (264)
T d1on3a2 29 KGYDVRDVIAKIVDW--G----DYLEVKAGYA---TNLVTAFARV------NGRSVGIVANQPSVMSGCLDINASDKAAE 93 (264)
T ss_dssp CCCCTHHHHHHHSGG--G----CEEEESTTSS---TTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHhccC--c----eeeeecCCCc---CCEEEEEEEE------ecceEEEEeccchhcccccChHHHHHHHH
Confidence 344566777777776 4 6889887766 3489999887 99999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEE
Q 000086 1669 VTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVV 1748 (2304)
Q Consensus 1669 a~e~A~~~~lP~I~l~~s~GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i 1748 (2304)
.+++|-+.+||+|+|.++.|..+|...|-...++ ..+++
T Consensus 94 fi~lc~~~~iPlv~l~D~pGf~~G~~~E~~g~i~---------------------~ga~~-------------------- 132 (264)
T d1on3a2 94 FVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIR---------------------HGAKM-------------------- 132 (264)
T ss_dssp HHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHH---------------------HHHHH--------------------
T ss_pred HHHHHHhcCCceEEEeccccccccHHHHHHHHHH---------------------HHHHH--------------------
Confidence 9999999999999999999999984432111100 00010
Q ss_pred EeeccccccccccccccccccccccccccccceEEEEEcCcccchhhhhhcc-----cCEEEEecCcceEecChHHHHHh
Q 000086 1749 DSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARL-----GMRCIQRLDQPIILTGFSALNKL 1823 (2304)
Q Consensus 1749 ~~i~G~~~g~gve~l~~SG~iag~~s~ay~~iptis~vtg~t~G~gAyl~~l-----gd~~I~~~~~~i~ltG~~al~~~ 1823 (2304)
+ -++ +-..+|.||++++.++|+ ||+++. .|++++-+++.+.+-||..--.+
T Consensus 133 --------------------~-~a~--a~~~vP~itvi~rkayG~-g~~am~g~~~~~d~~~aWP~A~~~vMg~Egaa~v 188 (264)
T d1on3a2 133 --------------------L-YAY--SEATVPKITVVLRKAYGG-SYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANV 188 (264)
T ss_dssp --------------------H-HHH--HHCCSCEEEEEEEEEEHH-HHHTTTCGGGTCSEEEECTTCEEESSCHHHHHHH
T ss_pred --------------------H-HHH--HcCCCCEEEEEeccccCc-cccccccccCChhheeeHHhhHhhhccHHHHHHH
Confidence 0 000 012379999999999886 445554 47899999999999999766554
Q ss_pred hc-ccccccc--------------cccCcceeecccCceEEEecCcHHHHHHHHHHHhcCCCC
Q 000086 1824 LG-REVYSSH--------------MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPH 1871 (2304)
Q Consensus 1824 lG-~~vy~s~--------------~~lGG~~i~~~nGv~d~~v~dd~~~~~~i~~~LsylP~~ 1871 (2304)
+- +++-... +..+.+-.....|.+|-|. |-.+--..|..+|..+...
T Consensus 189 ~~~~el~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VI-dP~eTR~~L~~aLe~~~~k 250 (264)
T d1on3a2 189 IFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVI-DPADTRRKIASALEMYATK 250 (264)
T ss_dssp HTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEEC-CGGGHHHHHHHHHHHGGGC
T ss_pred HHhhhhhhhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeE-CHHHHHHHHHHHHHHHhcC
Confidence 32 2221000 1122332233579999988 5677777888888877543
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=1.2e-08 Score=120.15 Aligned_cols=140 Identities=12% Similarity=0.062 Sum_probs=110.2
Q ss_pred cCCCceecccCCCC---eEEEEEEEE------CCeEEEEEEEecceeeccccCCCCCCCccccccccCCCccCHHHHHHH
Q 000086 1919 DKDSFVETLEGWAR---TVVTGRARL------GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKT 1989 (2304)
Q Consensus 1919 D~gsF~E~~~~~a~---~vVtG~arl------~G~pVGViA~e~~~~~~~~padpa~p~s~~~~~~~~gg~~~p~sa~K~ 1989 (2304)
|.++|.|.....|. ++|+|.+++ +|++|.|+|||.++. +|++++....|.
T Consensus 65 ~~~~l~e~~r~~G~n~~gmV~g~~~i~t~eyp~GR~vvvianD~T~~---------------------~GS~g~~e~~k~ 123 (333)
T d1uyra1 65 ENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK---------------------IGSFGPQEDEFF 123 (333)
T ss_dssp TTSCEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG---------------------GGCBCHHHHHHH
T ss_pred CCCceeeccccCCCCCCCeEeEEEEEcCCcCCCCcEEEEEEECCcee---------------------cCccCHHHHHHH
Confidence 46789999876665 899999999 799999999987755 899999999999
Q ss_pred HHHHHHhhccCCCEEEEecCCCCCCchhhhhh------------------------------------------------
Q 000086 1990 AQALMDFNREELPLFILANWRGFSGGQRDLFE------------------------------------------------ 2021 (2304)
Q Consensus 1990 a~~i~~~~~~~lPLv~l~d~~Gf~~G~~~e~~------------------------------------------------ 2021 (2304)
.++.++|.+.+||+|.|+++.|...|..++-.
T Consensus 124 ~~a~elA~~~~iP~I~l~~~sGARi~~~~~~~~~~~v~~~~~~~p~~G~~ylyl~~~~~~~~~~~~~~~~v~~~~~~~~g 203 (333)
T d1uyra1 124 NKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVING 203 (333)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETT
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcCcccccccccccccccCCCCCcccCcceeecCHHHHHhhhhcccccceeeeeeccCC
Confidence 99999999999999999999997666433210
Q ss_pred ----------------hH--HHHHHHHHHHHHcC--CCCEEEEEcCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2022 ----------------GI--LQAGSTIVENLRTY--KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2022 ----------------gi--lk~ga~iv~al~~~--~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
|+ |+..+.|..+++.+ .+|+|++++ +.+.+||||.+.-+ |+ +++.++|.+.+.
T Consensus 204 e~~~~i~~i~G~~~g~GVe~L~g~g~ia~~~s~a~~~iptis~v~-G~~vG~gAyl~~L~----d~--vIm~~~s~i~lt 276 (333)
T d1uyra1 204 EERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVT-CRSVGIGAYLVRLG----QR--AIQVEGQPIILT 276 (333)
T ss_dssp EEEEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHHHSCEEEEES-SCEETHHHHHHHHT----CC--EEEETTCCEESS
T ss_pred ceeeeeccccccccCCCcchhHHHHHHHHHHHHhcCCCCEEEEEe-CCccccceeecccc----cE--EEEeCCceEEee
Confidence 11 23334455444443 599999999 56677788887654 66 778889999999
Q ss_pred Cccch
Q 000086 2082 EPEGM 2086 (2304)
Q Consensus 2082 ~Peg~ 2086 (2304)
+|...
T Consensus 277 Gp~~l 281 (333)
T d1uyra1 277 GAPAI 281 (333)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99543
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=2.7e-08 Score=117.14 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=123.2
Q ss_pred ccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEec--------cccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCC
Q 000086 1616 ERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANS 1687 (2304)
Q Consensus 1616 ~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~--------t~~~GS~g~~~~~k~~ra~e~A~~~~lP~I~l~~s~ 1687 (2304)
+|.-|.+. .|++++.++ +|++|+|++++- .+.+|+..|...+|-.|++++|.+.++|+|+|.|+.
T Consensus 89 dr~~~dD~-aii~G~a~~------~g~~V~vIg~~kg~~~~~~~~~n~G~~~p~~~rKa~r~~~~a~~~~~Pii~~vDtp 161 (316)
T d2f9ya1 89 DRAYADDK-AIVGGIARL------DGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTP 161 (316)
T ss_dssp CSSSCCCT-TEEEEEEEE------TTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred ccccCcCc-cccceeeee------cCCeEEEEEeecCCCcccccccccccccHHHHHHHHHHHHHHHHcCcceEEEEecC
Confidence 34444444 488888876 999999999998 778999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhhhcccccCCCCCCCCccccccChhHHHhhccceeeeccccccCceeeEEEeecccccccccccccccc
Q 000086 1688 GARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSG 1767 (2304)
Q Consensus 1688 GARi~~~e~v~~l~~vaw~d~~~~~~g~~~ly~~~~~~~~l~~~v~~~~~~~~~ge~~~~i~~i~G~~~g~gve~l~~SG 1767 (2304)
||-.+...|-...- ...++ |+.
T Consensus 162 G~~~g~~~E~~g~~---------------------~~~a~----------------------------------~~~--- 183 (316)
T d2f9ya1 162 GAYPGVGAEERGQS---------------------EAIAR----------------------------------NLR--- 183 (316)
T ss_dssp CSCCSHHHHHTTHH---------------------HHHHH----------------------------------HHH---
T ss_pred cccCCcccccccHH---------------------HHHHH----------------------------------HHH---
Confidence 99998654432210 00000 000
Q ss_pred ccccccccccccceEEEEEcCcccchhhhhhcccCEEEEecCcceEecChHHHHHhhcccccccc---cccC-cceeecc
Q 000086 1768 AIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLG-GPKIMAT 1843 (2304)
Q Consensus 1768 ~iag~~s~ay~~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~~al~~~lG~~vy~s~---~~lG-G~~i~~~ 1843 (2304)
++|. ..+|+||+|+|.+.||||+....+|++.|.+++-+-+-+|..--..+.++.-..+ +.++ +++=+.+
T Consensus 184 ----~~~~--~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~a~~svispEg~AsILwkd~~~a~eaAealklta~dL~~ 257 (316)
T d2f9ya1 184 ----EMSR--LGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKE 257 (316)
T ss_dssp ----HHHT--CSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSCSTTHHHHHHHHTCSHHHHHT
T ss_pred ----HHHh--CCCceEEEEEhhhhchhhhhhhhhhHHHHHhhhHHhhccchhhhhHhhccchhhcchHHHHhhhhHHHHH
Confidence 0111 2489999999999999999999999999999998888899888887776541111 1111 1222357
Q ss_pred cCceEEEec
Q 000086 1844 NGVVHLTVS 1852 (2304)
Q Consensus 1844 nGv~d~~v~ 1852 (2304)
.|++|-+++
T Consensus 258 lgiIDeII~ 266 (316)
T d2f9ya1 258 LKLIDSIIP 266 (316)
T ss_dssp TTSCSCCCC
T ss_pred cCchhhccc
Confidence 899998884
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=1.1e-07 Score=96.18 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=84.6
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000086 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2304)
Q Consensus 49 ~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~ 128 (2304)
.||+|+|+|..|..++.+++++||+++ +. |.+.+++..+.||+++.. +|.|.+.+.+++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~-----------v~--d~~~~~PA~~va~~~i~~-------~~~d~~~l~~~~~ 71 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVI-----------AV--DRYADAPAMHVAHRSHVI-------NMLDGDALRRVVE 71 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEE-----------EE--ESSTTCGGGGGSSEEEEC-------CTTCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEE-----------EE--cCCCCCchhhcCCeEEEC-------CCCCHHHHHHHHH
Confidence 489999999999999999999999985 34 666889999999999986 5788999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHh
Q 000086 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170 (2304)
Q Consensus 129 ~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~l 170 (2304)
++++|.|. |+|..-+.+..+.|++.|+.+. |++++++.+
T Consensus 72 ~~~~DviT--~E~EnI~~~~L~~le~~g~~v~-Ps~~al~it 110 (111)
T d1kjqa2 72 LEKPHYIV--PEIEAIATDMLIQLEEEGLNVV-PCARATKLT 110 (111)
T ss_dssp HHCCSEEE--ECSSCSCHHHHHHHHHTTCEES-SCHHHHHHH
T ss_pred hhCCceEE--EEecCcCHHHHHHHHHCCCeEC-CCHHHHHhh
Confidence 99999998 4555555556788999998876 999999876
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=2.4e-06 Score=94.01 Aligned_cols=163 Identities=12% Similarity=0.007 Sum_probs=103.3
Q ss_pred cCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEEEEcCCC
Q 000086 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQLLCDQYG 293 (2304)
Q Consensus 216 V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~i~VEeyI~g--~reieVqvl~D~~G 293 (2304)
..+.+++.++.++.| |+|+||..|++|+||.++.+.+................++++++|++. ++++.+.+++++.-
T Consensus 19 t~~~~~~~~f~~~~g-~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~d~Rv~vv~~~~~ 97 (192)
T d1gsaa2 19 TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPV 97 (192)
T ss_dssp ESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEEC
T ss_pred ECCHHHHHHHHHHcC-CeEEEEcCCCeEEEEEEeecCchhhhHHHHHHHhcCccccccccccccccCceeEEEEECCcce
Confidence 589999999999987 999999999999999999866554433333333344567899999975 35777777764321
Q ss_pred CE-EEeecc--ccccccccce-EEEeCCCCCCCHHHHHHHHHHHHHHHHHCCceeeeEEEEEEEccCCcEEEEEeccCCC
Q 000086 294 NV-AALHSR--DCSVQRRHQK-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369 (2304)
Q Consensus 294 ~v-i~l~~R--dcSvqrr~qK-iieeaPa~~l~~e~~~~m~e~A~rlakalGy~Ga~tVEfl~d~~~g~~yfLEINpRlq 369 (2304)
-. ..-... +.. ...++- -.+ |.. + .+...++...+.++++.+|.. .+.||++ . + |++|+|+=-.
T Consensus 98 ~a~~r~~~~~~~~~-~n~~~Gg~~~--~~~-~-~~~~~~~a~~~~~~l~~~gl~-~~gVDii-~---~--~~~EiNv~s~ 165 (192)
T d1gsaa2 98 PYCLARIPQGGETR-GNLAAGGRGE--PRP-L-TESDWKIARQIGPTLKEKGLI-FVGLDII-G---D--RLTEINVTSP 165 (192)
T ss_dssp SEEEEEECCSSCSC-CCGGGTCEEE--EEE-C-CHHHHHHHHHHHHHHHHTTCC-EEEEEEE-T---T--EEEEEECSSC
T ss_pred EEEEEecccCCcch-hhhhccCcce--eec-c-cHHHHHHHHHHHHHHHhhcCc-eEEEEee-C---C--eEEEEEcCCc
Confidence 11 110000 110 111110 111 111 2 234456666666677777753 4457876 2 2 7899998655
Q ss_pred CCcceehhhhcCCHHHHHHHHH
Q 000086 370 VEHPVTEWIAEINLPAAQVAVG 391 (2304)
Q Consensus 370 gehpvtE~vtGVDL~~~qL~iA 391 (2304)
++..-.+.++|+|+.+..++..
T Consensus 166 ~g~~~l~~~~g~~ia~~ivd~l 187 (192)
T d1gsaa2 166 TCIREIEAEFPVSITGMLMDAI 187 (192)
T ss_dssp CCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 5566678899999999988754
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=9.2e-07 Score=89.58 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=87.1
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000086 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2304)
Q Consensus 47 ~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~ 115 (2304)
-.+||||+|.|. .++.+++++|+.||+++..+.+..+| +.-..+||+.|.-|
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV-----------std~d~aD~lYfep------ 65 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV-----------STDYDTSDRLYFEP------ 65 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS-----------TTSTTSSSEEECCC------
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh-----------hcChhhcCceEEcc------
Confidence 468999999985 68999999999999997433333332 23335799999876
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcCH
Q 000086 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDK 173 (2304)
Q Consensus 116 sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgDK 173 (2304)
++.+.+.++.+++++|+|++.+|.... ..++..|++.|+.++|.+++++..+-|+
T Consensus 66 --lt~e~v~~Ii~~E~p~~ii~~~GGQta-lnla~~L~~~gv~iLGt~~~~Id~aEDR 120 (121)
T d1a9xa4 66 --VTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEAAGVPVIGTSPDAIDRAEDR 120 (121)
T ss_dssp --CSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHHTTCCBCSSCHHHHHHHHSH
T ss_pred --CCHHHHHHHHHHhCCCEEEeehhhhhH-HHHHHHHHHcCCcEECCCHHHHHHHHCc
Confidence 678999999999999999999986553 2378889999999999999999998875
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=7.2e-06 Score=83.90 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=80.0
Q ss_pred CCccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000086 46 KPIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2304)
Q Consensus 46 ~~~~kILIan~G~-----------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~ 114 (2304)
.-++||||+|.|. .++++++++|+.||+++..+.+..+ -+.-...||+.|.-|
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T-----------Vstd~d~aD~lYfeP----- 68 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT-----------IMTDPEMADATYIEP----- 68 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC-----------GGGCGGGSSEEECSC-----
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh-----------hhcChhhcceeeeec-----
Confidence 4578999999986 6899999999999999733333322 223345899999876
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHH------HHHCCCeEECCCHHHHHHh
Q 000086 115 NNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDT------LSTKGIIFLGPPATSMAAL 170 (2304)
Q Consensus 115 ~sY~dvd~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~------l~~~GI~fiGPs~eam~~l 170 (2304)
++.+.+.++.+++++|+|++.+|...-. .++.. |++.|+.++|.+++++..+
T Consensus 69 ---lt~e~v~~Ii~~E~pd~il~~~GGQtal-nla~~L~~~giL~~~~v~iLGt~~~sId~a 126 (127)
T d1a9xa3 69 ---IHWEVVRKIIEKERPDAVLPTMGGQTAL-NCALELERQGVLEEFGVTMIGATADAIDKA 126 (127)
T ss_dssp ---CCHHHHHHHHHHHCCSEEECSSSHHHHH-HHHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred ---CCHHHHHHHHHHhCcCCeEEEeeeehHh-HHHHHHHHcCcHHhcCCeEECCCHHHHHHh
Confidence 6789999999999999999999854321 13444 4556899999999998764
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=1.9e-05 Score=89.82 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=82.7
Q ss_pred HHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCC-cEEEeecCCCCCc----CeE
Q 000086 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASWGGGGK----GIR 247 (2304)
Q Consensus 173 K~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~GgGGk----GIr 247 (2304)
-+.+|++++++|||+|++.. ++|.+|+.++++++|| ||++|+....|+| ||+
T Consensus 5 E~eaK~lL~~yGIpvp~~~~-----------------------a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~ 61 (238)
T d2nu7b2 5 EYQAKQLFARYGLPAPVGYA-----------------------CTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVK 61 (238)
T ss_dssp HHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCCceE-----------------------ECCHHHHHHHHHHhCCCcEEEEEeecccccccceEEE
Confidence 46789999999999999765 7899999999999996 9999986554544 899
Q ss_pred EECCHHHHHHHHHHHHhhC--------C---CCcEEEEEeccccceeeEEEEEcCC-CCEEEee
Q 000086 248 KVHNDDEVRALFKQVQGEV--------P---GSPIFIMKVASQSRHLEVQLLCDQY-GNVAALH 299 (2304)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~--------~---~~~i~VEeyI~g~reieVqvl~D~~-G~vi~l~ 299 (2304)
++.+.+|............ . -..+++|+.++.++|+.+-+..|.. |.++.++
T Consensus 62 ~~~~~~e~~~~a~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~~ 125 (238)
T d2nu7b2 62 VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMA 125 (238)
T ss_dssp EECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEE
T ss_pred eccccHHHHHHHHHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccCCceEEEE
Confidence 9999999888777764211 1 1358999999999999999998874 4444433
|
| >d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Thermococcus kodakaraensis [TaxId: 311400]
Probab=97.58 E-value=1.6e-05 Score=86.04 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCCcEEEeecCCCCCcCeEEECCHHHH
Q 000086 176 SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEV 255 (2304)
Q Consensus 176 sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL 255 (2304)
.+++++++|+|.|+-.. |+| -++.-|||||-..-.||+|-+++.|.++.
T Consensus 3 ~~k~Le~AGip~Pk~~~--------------Ped-----------------i~~d~~ViVK~~gAkggrGyFia~~~e~~ 51 (213)
T d2pbza2 3 QDKALEGAGIPRVEVVE--------------PED-----------------AKPDELYFVRIEGPRGGSGHFIVEGSELE 51 (213)
T ss_dssp HHHHHHHHTCCBCCBCC--------------SCC-----------------CCSSCCEEEECCC------------EECS
T ss_pred hHHHHHhCCCCCCcccC--------------ccc-----------------cCCCceEEEEeccccCcceEEEEcCHHHH
Confidence 57889999999997321 111 02367999999888899999999886543
Q ss_pred HHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeeccccccccccc---------------eEEEeCCCCC
Q 000086 256 RALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ---------------KIIEEGPITV 320 (2304)
Q Consensus 256 ~~a~~~~~~e~~~~~i~VEeyI~g~reieVqvl~D~~G~vi~l~~RdcSvqrr~q---------------KiieeaPa~~ 320 (2304)
...... .....||||+-| -.+-++.|.+.--+-+-+.+-| ||++ -++...|++
T Consensus 52 ~~~~~~------~e~~~IeEyv~G-~~~~~~yFySpi~~~lEllg~D----rR~~~~dg~~r~pa~~~~~~v~Gn~p~v- 119 (213)
T d2pbza2 52 ERLSTL------EEPYRVERFIPG-VYLYVHFFYSPILERLELLGVD----ERVLIADGNARWPVKPLPYTIVGNRAIA- 119 (213)
T ss_dssp CCCC----------CCEEEECCCS-CEEEEEEEEETTTTEEEEEEEE----EEEETTCSSSSSCCSCCCCCEEEEEECE-
T ss_pred Hhhhhc------ccceEEEEEecc-ceeeeeeeccccccceeeEeee----eeeecccccccccccCCCeEEEcCccce-
Confidence 321111 235789999987 4677776654433333333323 2221 122234554
Q ss_pred CCHHHHHHHHHHHHHHHHHC------CceeeeEEEEEEEccCCcEEEEEeccCCCCC
Q 000086 321 APLETVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2304)
Q Consensus 321 l~~e~~~~m~e~A~rlakal------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2304)
+.+.+.+++.+++.+++++. |..|++++|..+| .++++.|+.+|+.++
T Consensus 120 iRESLL~~vf~~ge~fV~a~k~l~~pG~iGPFcLq~~~d---~~~~vfevS~RI~gG 173 (213)
T d2pbza2 120 LRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALHFAYD---GSFKAIGIASRIDGG 173 (213)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEEEECS---SSCEEEEEESSBCSG
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEEEEc---CCEEEEEEeeeecCC
Confidence 56777777777777766654 8899999999886 469999999999765
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.42 E-value=0.00021 Score=81.23 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHCCCCcCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHhhccCC-cEEEeecC--CCCC-----
Q 000086 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASW--GGGG----- 243 (2304)
Q Consensus 172 DK~~sr~laq~aGVPtpp~s~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~--GgGG----- 243 (2304)
+-+.+|++++++|||+|++.. ++|.+|+.++++++|| |||+|+.- |+.|
T Consensus 5 ~E~eaK~lL~~yGIpvp~~~~-----------------------a~s~~ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~ 61 (246)
T d1eucb2 5 QEYQSKKLMSDNGVKVQRFFV-----------------------ADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 61 (246)
T ss_dssp CHHHHHHHHHTTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTCSSEEEEECCSSSCCTTCEET
T ss_pred hHHHHHHHHHHcCCCCCCeeE-----------------------ECCHHHHHHHHHHhCCCeEEEEEeeccccccccccc
Confidence 367899999999999999665 7899999999999996 89999842 2211
Q ss_pred ----cCeEEECCHHHHHHHHHHHHhhC------C-----CCcEEEEEeccccceeeEEEEEcCC
Q 000086 244 ----KGIRKVHNDDEVRALFKQVQGEV------P-----GSPIFIMKVASQSRHLEVQLLCDQY 292 (2304)
Q Consensus 244 ----kGIr~V~s~eEL~~a~~~~~~e~------~-----~~~i~VEeyI~g~reieVqvl~D~~ 292 (2304)
-||+.+.|.+|+.++++...... + ...+++|+.++.++|+-+.+..|..
T Consensus 62 k~~~GgV~~~~~~ee~~~~a~~~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~~ 125 (246)
T d1eucb2 62 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS 125 (246)
T ss_dssp TSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEGG
T ss_pred cCCcceEEEecChhHHHHHhhhhhcchhhhhhccccccccccceehhcccccceeeeeeeeccc
Confidence 47888999999999887654321 1 2468999999999999999998754
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.13 E-value=0.001 Score=79.12 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=61.2
Q ss_pred CccccccCCCCCceEEEEEEEeecCcccCCCcEEEEEEEecccc---------------------CCCcchHHHHHHHHH
Q 000086 1611 PLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK---------------------AGSFGPREDAFFLAV 1669 (2304)
Q Consensus 1611 ~l~e~~r~~g~n~~g~v~~~~~~~tpe~~~Gr~vvv~a~D~t~~---------------------~GS~g~~~~~k~~ra 1669 (2304)
+|.|+...-|. +||+|...| +|++|-|+||+..+. ||.+-+....|..++
T Consensus 51 sF~E~~~~~a~---svVtG~ARL------~G~PVGVIAne~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~ 121 (404)
T d1uyra2 51 SFFETLSGWAK---GVVVGRARL------GGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQA 121 (404)
T ss_dssp CCEEESTTSCT---TEEEEEEEE------TTEEEEEEEECCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHH
T ss_pred ceeehhhccCC---ceEEEEEEE------CCEEEEEEEeCcccccCCccCCcccccchhhhhhccCCccCchHHHHHHHH
Confidence 68888766553 489999987 999999999998775 566677888899988
Q ss_pred H-HHHHHcCCCEEEEEcCCCCCCCch
Q 000086 1670 T-DLACAKKLPLIYLAANSGARIGVA 1694 (2304)
Q Consensus 1670 ~-e~A~~~~lP~I~l~~s~GARi~~~ 1694 (2304)
+ +++...++|+|+|.+..|.-.|..
T Consensus 122 i~d~cd~~~lPLi~l~D~pGF~~G~~ 147 (404)
T d1uyra2 122 INDFNNGEQLPMMILANWRGFSGGQR 147 (404)
T ss_dssp HHHHHTTSCCCEEECCCCCCBCC---
T ss_pred HHHhhhccccceEEeecCCcccCcHH
Confidence 7 588899999999999999988744
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=95.63 E-value=0.041 Score=59.78 Aligned_cols=158 Identities=11% Similarity=0.160 Sum_probs=98.4
Q ss_pred CCCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.+|.+.+..+.+....+...+. ..-|+-+..|++| |-...|-.+.+++...+.|+.+++. |.+.+
T Consensus 31 l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G----------G~v~~g~~i~d~i~~~~~~V~tv~~--G~aaS~ 98 (193)
T d1tg6a1 31 VMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCV--GQAASM 98 (193)
T ss_dssp EESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSCSCEEEEEE--EEEETH
T ss_pred ECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCc----------ccHHHHHHHHHHHHhhcCceEEEEc--cchHHH
Confidence 3678889988888765555443 4569999999999 4566788999999999999999999 77766
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQI 2133 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 2133 (2304)
|+.+..+.. ... .|+.|+|++-+=.|.+...= ...++...++.++.....+.+-+++. ...+.+ .+++.+
T Consensus 99 a~~il~aG~--~g~--R~~~pns~~miHq~~~~~~G--~~~di~~~~~el~~~~~~i~~i~a~~-Tg~~~~---~i~~~~ 168 (193)
T d1tg6a1 99 GSLLLAAGT--PGM--RHSLPNSRIMIHQPSGGARG--QATDIAIQAEEIMKLKKQLYNIYAKH-TKQSLQ---VIESAM 168 (193)
T ss_dssp HHHHHHTSC--TTC--EEECTTCEEEECCCCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHH---HHHHHH
T ss_pred HHHHhhcCc--cCc--cccCcccHHHhcCCccCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH---HHHHHh
Confidence 444444332 123 68899999988888765421 12233333222222222222212111 012221 111111
Q ss_pred HHHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCc
Q 000086 2134 KAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2173 (2304)
Q Consensus 2134 ~~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~ 2173 (2304)
=.|.+-+|..+++-|+||+||.-
T Consensus 169 -----------------~rD~~lta~EAl~yGliD~Ii~~ 191 (193)
T d1tg6a1 169 -----------------ERDRYMSPMEAQEFGILDKVLVH 191 (193)
T ss_dssp -----------------SSCEEECHHHHHHHTSCSEECSS
T ss_pred -----------------ccCccCCHHHHHHcCCCCEEccC
Confidence 02555689999999999999963
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.035 Score=59.64 Aligned_cols=158 Identities=9% Similarity=0.120 Sum_probs=94.0
Q ss_pred CCccCHHHHHHHHHHHHHhhcc--CCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1978 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
+|.+..+.+.+....+...+.. .-|+.+..|++| |.+-.|-.+.+++...+.|+.+++. |.+.+.|
T Consensus 22 ~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G----------G~v~~g~~i~d~i~~~~~~v~tv~~--G~aaS~a 89 (183)
T d1yg6a1 22 TGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG----------GVITAGMSIYDTMQFIKPDVSTICM--GQAASMG 89 (183)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred CCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC----------ccHHHHHHHHHHHHhCCCCEEEEEE--EEeHHHH
Confidence 5678888888876666655543 469999999999 5566788899999999999999998 6666644
Q ss_pred -hhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 000086 2056 -WVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2134 (2304)
Q Consensus 2056 -~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 2134 (2304)
.+.+...- .. .|+.|+|++-+-.|.+...=. ..++...+..++.....+.+-+.+. ...+.++ +++.+
T Consensus 90 ~~I~~ag~~--~~--R~~~~ns~~miH~~~~~~~G~--~~~i~~~~~~~~~~~~~~~~~~~~~-tg~~~e~---i~~~~- 158 (183)
T d1yg6a1 90 AFLLTAGAK--GK--RFCLPNSRVMIHQPLGGYQGQ--ATDIEIHAREILKVKGRMNELMALH-TGQSLEQ---IERDT- 158 (183)
T ss_dssp HHHHHTSCT--TC--EEECTTCEEEECCCEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHH---HHHHT-
T ss_pred HHHHHcCCC--Cc--eeeCCCceEEecccccccccC--HHHHHHHHHHHHHHHHHHHHHHHHH-HCcCHHH---HHHHh-
Confidence 33333321 12 577788888777765442111 1122222222222111222212111 0122221 11111
Q ss_pred HHHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCcc
Q 000086 2135 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD 2174 (2304)
Q Consensus 2135 ~re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~ 2174 (2304)
-.|..-+|..+++-|+||+||+-+
T Consensus 159 ----------------~~d~~lta~EAl~~GliD~Ii~~~ 182 (183)
T d1yg6a1 159 ----------------ERDRFLSAPEAVEYGLVDSILTHR 182 (183)
T ss_dssp ----------------SSCEEEEHHHHHHHTSSSEECCCC
T ss_pred ----------------ccCccccHHHHHHcCCCcEEeccC
Confidence 134556899999999999999754
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=95.29 E-value=0.036 Score=60.08 Aligned_cols=165 Identities=14% Similarity=0.111 Sum_probs=95.3
Q ss_pred CCCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCchh
Q 000086 1977 AGQVWFPDSATKTAQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2055 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GGa 2055 (2304)
.+|.+..+++.....-+...+. ..-|+-+..|++| |-+..|-.+.+++...+.|+.+++. |.+.+.|
T Consensus 23 l~g~Id~~~~~~~i~~l~~l~~~~~~~I~l~INS~G----------G~v~~g~ai~d~i~~~~~~v~tv~~--G~aaS~a 90 (190)
T d2f6ia1 23 LTDEINKKTADELISQLLYLDNINHNDIKIYINSPG----------GSINEGLAILDIFNYIKSDIQTISF--GLVASMA 90 (190)
T ss_dssp ECSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEECHHH
T ss_pred ECCeeCHHHHHHHHHHHHHHhccCCCCeEEEEeCch----------hhhhHHHHHHHHHHhhCCceEEEEe--ccccchh
Confidence 4678888887776655544433 4568999999999 5556778899999999999999999 6666644
Q ss_pred hhhcccccCCccceeecccCcEEEeeCccchhhhhcchhhHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 000086 2056 WVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKA 2135 (2304)
Q Consensus 2056 ~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~v~i~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 2135 (2304)
.+.+... .... .++.|++++-+-.|.+...=. ..++...++.++..-..+.+-+.+. ...+.++ +++.+ +
T Consensus 91 ~~i~~aG-~kg~--R~~~pns~imiH~~s~~~~G~--~~di~~~~~~l~~~~~~~~~i~a~~-tg~~~~~---i~~~~-~ 160 (190)
T d2f6ia1 91 SVILASG-KKGK--RKSLPNCRIMIHQPLGNAFGH--PQDIEIQTKEILYLKKLLYHYLSSF-TNQTVET---IEKDS-D 160 (190)
T ss_dssp HHHHHTS-CTTC--EEECTTCEEESSCTTCSCC----------CHHHHHHHHHHHHHHHHHH-HCCCHHH---HHHHH-H
T ss_pred HHHHHhC-CCCc--cccCCCcEEEEcccccccCCc--HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH---HHHhc-c
Confidence 4433221 1223 678899988877776543211 1222222222111111111111111 1122221 11111 0
Q ss_pred HHHhhcchhhHHHHHhhhhcccHHHHHHcCCcceecCccchHHH
Q 000086 2136 REKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSF 2179 (2304)
Q Consensus 2136 re~~l~p~y~~~a~~fad~hdt~~rm~~~G~Id~vi~~~~tR~~ 2179 (2304)
.|..=+|..+++.|+||+||+.+-.+.+
T Consensus 161 ----------------~d~~l~a~EAl~~GliD~Ii~~~~~~p~ 188 (190)
T d2f6ia1 161 ----------------RDYYMNALEAKQYGIIDEVIETKLPHPY 188 (190)
T ss_dssp ----------------TTCEECHHHHHHHTSCSEECCCSSCCTT
T ss_pred ----------------CCeeecHHHHHHcCCCcEEcccCCCCCC
Confidence 2445579999999999999987655443
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.10 E-value=0.071 Score=57.73 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=67.3
Q ss_pred CCCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCc-
Q 000086 1977 AGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2053 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~G- 2053 (2304)
.+|.+.+..+.....-+...+. -.-|+.+..|++| |-...|-.+.+++...+.|+.+++. |.+.+
T Consensus 29 l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~G----------G~v~~glai~d~i~~~~~~v~t~~~--G~aaS~ 96 (192)
T d1y7oa1 29 LTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG----------GSVSAGLAIVDTMNFIKADVQTIVM--GMAASM 96 (192)
T ss_dssp EESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred ECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCC----------CCHHHHHHHHHHHHhcCcceEEEec--cccCCc
Confidence 3678888888887765554443 4569999999999 4456788899999999999999999 77666
Q ss_pred hhhhhcccccCCccceeecccCcEEEeeCccch
Q 000086 2054 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2054 Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
|+.+.+..+ ++. -|+.|+|++=+-.|.+.
T Consensus 97 as~il~aG~--~g~--R~~~pns~~miHq~~~~ 125 (192)
T d1y7oa1 97 GTVIASSGA--KGK--RFMLPNAEYMIHQPMGG 125 (192)
T ss_dssp HHHHHTTSC--TTC--EEECTTCEEECCCCC--
T ss_pred cceeeeecC--CCc--cccchHHHHHhhccccc
Confidence 444433332 233 67888887777666544
|
| >d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Thermus thermophilus [TaxId: 274]
Probab=94.71 E-value=0.017 Score=58.83 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=40.1
Q ss_pred CCceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 694 TPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 694 mPGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
.-|.|+.+.. ++|++|++|++++.||+-|...+|.||.+|+|..+
T Consensus 33 ~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~v 78 (127)
T d1onla_ 33 ALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEV 78 (127)
T ss_dssp HHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEE
T ss_pred hccccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEE
Confidence 4566777654 89999999999999999999999999999999877
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.67 E-value=0.14 Score=54.69 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=64.5
Q ss_pred CCCccCHHHHHHHHHHHHHhhc--cCCCEEEEecCCCCCCchhhhhhhHHHHHHHHHHHHHcCCCCEEEEEcCCCcCCch
Q 000086 1977 AGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2054 (2304)
Q Consensus 1977 ~gg~~~p~sa~K~a~~i~~~~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~~I~~~ge~~GG 2054 (2304)
.+|.+....+.+...-+...+. -.-|+-+..|++| |-.-.|-.+.+++...+.|+.+++. |.+.+.
T Consensus 18 l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G----------G~v~~gl~i~d~i~~~~~~v~t~~~--G~aaS~ 85 (179)
T d2cbya1 18 LGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG----------GSISAGMAIYDTMVLAPCDIATYAM--GMAASM 85 (179)
T ss_dssp ECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHCSSCEEEEEE--EEEETH
T ss_pred ECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCC----------CCHHHHHHHHHHHHhhccceeeehh--hhhhhH
Confidence 3678888888777654433332 4689999999999 4455677899999999999999999 666664
Q ss_pred hhh-hcccccCCccceeecccCcEEEeeCccch
Q 000086 2055 AWV-VVDSRINSDHIEMYADRTAKGNVLEPEGM 2086 (2304)
Q Consensus 2055 a~v-v~~~~i~~d~~~~~A~p~A~~gvl~Peg~ 2086 (2304)
+-+ .+...- .. .|+.|+|++=+-.|.+.
T Consensus 86 a~~il~ag~k--~~--R~~~~~s~~miH~~~~~ 114 (179)
T d2cbya1 86 GEFLLAAGTK--GK--RYALPHARILMHQPLGG 114 (179)
T ss_dssp HHHHHHTSCT--TC--EEECTTCEEECCCC---
T ss_pred HHHHHHcCCC--Cc--eEECCchHhhcCCCchh
Confidence 433 333321 12 57888888877666544
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.0069 Score=56.95 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
...|+||..|+|.+++|++||.|+.||+|++||
T Consensus 48 ~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 48 MNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 457999999999999999999999999999997
|
| >d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Pea (Pisum sativum) [TaxId: 3888]
Probab=94.49 E-value=0.02 Score=58.58 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=38.8
Q ss_pred CceeEEEEc-cCCCEEccCCcEEEEEccccceeeecCCCcEEEEe
Q 000086 695 PCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2304)
Q Consensus 695 PGkvv~~~V-~~Gd~V~~G~~l~~iEaMKm~~~l~ap~~G~V~~i 738 (2304)
-|.|+.+.. ++|++|++|++++.||+-|...+|.||.+|+|..+
T Consensus 35 lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~v 79 (131)
T d1hpca_ 35 LGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEV 79 (131)
T ss_dssp HCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEE
T ss_pred hhhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheee
Confidence 455666544 79999999999999999999999999999999877
|
| >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.42 E-value=0.0047 Score=68.38 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=57.4
Q ss_pred CeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc---------------------------------c------------
Q 000086 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---------------------------------K------------ 722 (2304)
Q Consensus 688 ~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM---------------------------------K------------ 722 (2304)
..|.|+.+|+|.+++|++||.|++||+|++|+.. |
T Consensus 16 ~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 95 (237)
T d1vf7a_ 16 AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQ 95 (237)
T ss_dssp EEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred EEEEeecCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcch
Confidence 4699999999999999999999999999999632 0
Q ss_pred ------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000086 723 ------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2304)
Q Consensus 723 ------------m~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~~ 757 (2304)
-.+.+.||.+|+|... +.+|+.+.+|..+..+...
T Consensus 96 a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~~~~~~ 143 (237)
T d1vf7a_ 96 SKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ 143 (237)
T ss_dssp HHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred hHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCcceeeEEEe
Confidence 0234999999999888 9999999998766544433
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=94.04 E-value=0.011 Score=54.97 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=29.9
Q ss_pred CCeeeeCCCceeEEEEccCCCEEccCCcEEEE
Q 000086 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2304)
Q Consensus 687 p~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~i 718 (2304)
...|.||..|.|.+++|++||.|+.||+|++|
T Consensus 45 ~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i 76 (77)
T d1dcza_ 45 ETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp EEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred cEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence 35699999999999999999999999999986
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=94.03 E-value=0.28 Score=54.81 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=68.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEe-cCCC-CCCchh---------hhhhhHHHHHHHHHHHHHcCCCCEEEEEc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILA-NWRG-FSGGQR---------DLFEGILQAGSTIVENLRTYKQPVFVYIP 2046 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~-d~~G-f~~G~~---------~e~~gilk~ga~iv~al~~~~vP~i~~I~ 2046 (2304)
..+.++......++++.+.+ ..+-.|+|. +.++ |+.|.. .+..+.++....++..+..+..|+|+.|-
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~ 104 (249)
T d1sg4a1 25 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 104 (249)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence 47899999999999998877 578888885 4555 887742 33445667778899999999999999997
Q ss_pred CCCcCCchhh-hhcccccCCccceeecccCcEEE
Q 000086 2047 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGN 2079 (2304)
Q Consensus 2047 ~~ge~~GGa~-vv~~~~i~~d~~~~~A~p~A~~g 2079 (2304)
|.+.||+. +++. .|+ ++|.+++++.
T Consensus 105 --G~a~GgG~~lal~----~D~--~ia~~~a~f~ 130 (249)
T d1sg4a1 105 --GACPAGGCLVALT----CDY--RILADNPRYC 130 (249)
T ss_dssp --EEBCHHHHHHHTT----SSE--EEEECCTTCC
T ss_pred --ccccccccccccc----ccc--ceeecccccc
Confidence 56666544 3443 466 7777776543
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.75 E-value=0.014 Score=54.73 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=32.6
Q ss_pred CCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 685 ~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
.-...|.||..|+|.+++|++||.|+.||+|+.||.
T Consensus 39 K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~ 74 (79)
T d1iyua_ 39 KASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp SCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred CcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEec
Confidence 334569999999999999999999999999999984
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=93.55 E-value=0.58 Score=51.49 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=69.9
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEec-C-CCCCCchhh----------hhhhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILAN-W-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d-~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
...++++.......+++.+++ .++-+|+|.- - ..|+.|..- ......+....++.++..+..|+|+.
T Consensus 21 ~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa 100 (230)
T d2a7ka1 21 HNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA 100 (230)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeee
Confidence 468999999999999999877 4677777753 3 359888631 22334556778889999999999999
Q ss_pred EcCCCcCCchhh-hhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~-vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |.+.||++ +++. .|+ ++|.++++++.
T Consensus 101 v~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 129 (230)
T d2a7ka1 101 VD--GYAIGMGFQFALM----FDQ--RLMASTANFVM 129 (230)
T ss_dssp EC--SEEETHHHHHHTT----SSE--EEEETTCEEEC
T ss_pred cc--cccccccccchhc----cch--hhccccchhhh
Confidence 98 66666544 3333 577 88888888875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.037 Score=51.59 Aligned_cols=50 Identities=4% Similarity=0.123 Sum_probs=41.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccC
Q 000086 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110 (2304)
Q Consensus 48 ~~kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~ 110 (2304)
||+|.|+|+|..|..++.+++++|+++. +. |.+++++....++..+..+.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~-----------vl--dp~~~~pa~~~a~dvIT~e~ 50 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVW-----------PV--GLDAEPAAVPFQQSVITAEI 50 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEE-----------EE--CTTSCGGGSCGGGSEEEESS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEE-----------EE--cCCCCCcccccccceEEEee
Confidence 6899999999999999999999999874 33 45567777788888887643
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.021 Score=53.56 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=35.4
Q ss_pred ccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 680 LLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 680 ~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
.++...-...+.||..|+|.++++++||.|+.||+|+.||+
T Consensus 36 ~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~ 76 (80)
T d1qjoa_ 36 TVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp EEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred EEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence 34444446789999999999999999999999999999985
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=93.04 E-value=0.49 Score=53.14 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=69.8
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEe-cCCCCCCchh-----------hhhhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILA-NWRGFSGGQR-----------DLFEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~-d~~Gf~~G~~-----------~e~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
.+|+.+......++++.++. .++=+|+|. +-+.|+.|.. +........+..++.++..+.+|+|+.|
T Consensus 31 Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v 110 (263)
T d1wz8a1 31 NAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAV 110 (263)
T ss_dssp GCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeec
Confidence 48999999999999998876 566677774 4456888752 1122334456778888999999999999
Q ss_pred cCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2046 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2046 ~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
- |...+||..+++. .|+ ++|.++++++.-+
T Consensus 111 ~-G~a~GgG~~lal~----~D~--~ia~~~a~f~~pe 140 (263)
T d1wz8a1 111 E-KVAVGAGLALALA----ADI--AVVGKGTRLLDGH 140 (263)
T ss_dssp C-SEEETHHHHHHHH----SSE--EEEETTCEEECCH
T ss_pred c-ccccccccccccc----ccc--ccccccccccccc
Confidence 8 3344445555554 477 8999999987743
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=93.02 E-value=0.025 Score=52.84 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=34.0
Q ss_pred cccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 681 LQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 681 ~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
++...-...|.||..|+|.++++++||.|+.|++|+.||.
T Consensus 38 vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~ 77 (79)
T d1ghja_ 38 IETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred EEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence 3334444579999999999999999999999999999973
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=92.67 E-value=0.063 Score=60.05 Aligned_cols=87 Identities=18% Similarity=0.125 Sum_probs=54.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-------h---HHHHHhhcccccccccccCccee----ecccC
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-------F---SALNKLLGREVYSSHMQLGGPKI----MATNG 1845 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-------~---~al~~~lG~~vy~s~~~lGG~~i----~~~nG 1845 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+.- . .-+-+.+|..... ..-+-|-.+ ...-|
T Consensus 95 kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~~l~~~~g~~~a~-~l~l~g~~~~a~eA~~~G 173 (253)
T d1uiya_ 95 KPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAK-DLLLTGRLVEAREAKALG 173 (253)
T ss_dssp SCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHH-HHHHHCCEEEHHHHHHHT
T ss_pred CCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccccchhhhhcccCHHHHH-HHhhcCcCCCHHHHHHhC
Confidence 6999999999999999999999999999997654431 1 1122223322100 001122222 34689
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000086 1846 VVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1846 v~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
++|.++++++ ..+.+.+|...+
T Consensus 174 lv~~v~~~~~-~~~~a~~~a~~~ 195 (253)
T d1uiya_ 174 LVNRIAPPGK-ALEEAKALAEEV 195 (253)
T ss_dssp SCSEEECTTC-HHHHHHHHHHHH
T ss_pred CCcccccccc-cchhHHHHHHhh
Confidence 9999997544 455555554443
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=1.3 Score=49.05 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=64.7
Q ss_pred CCccCHHHHHHHHHHHHHhhccCCCEEEEe-cCCCCCCchhh-------------hhhhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNREELPLFILA-NWRGFSGGQRD-------------LFEGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~~~lPLv~l~-d~~Gf~~G~~~-------------e~~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
...++.+......++++.+++...-+|++. .-+.|+.|..- ..........+++.++..++.|+|+
T Consensus 24 ~Nals~~~~~~l~~~l~~~~~d~~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa 103 (245)
T d2f6qa1 24 KNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA 103 (245)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHSSCSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEE
Confidence 358899999999999999987533355443 33447777421 1112223345788899999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
.|- |-+.||++.+.- ..|+ ++|.++++++.-
T Consensus 104 ~v~--G~a~GgG~~la~---~~D~--~ia~~~a~f~~p 134 (245)
T d2f6qa1 104 VVN--GPAVGISVTLLG---LFDA--VYASDRATFHTP 134 (245)
T ss_dssp EEC--SCEETHHHHGGG---GCSE--EEEETTCEEECC
T ss_pred EEC--Cccccccccchh---hhhh--hhhhccCeEecc
Confidence 998 555555443322 2477 888888888763
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=92.47 E-value=1.8 Score=47.55 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=68.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEe-cCCCCCCchh-hhh-----------hhHHHHHHHHHHHHHcCCCCEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILA-NWRGFSGGQR-DLF-----------EGILQAGSTIVENLRTYKQPVFV 2043 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~-d~~Gf~~G~~-~e~-----------~gilk~ga~iv~al~~~~vP~i~ 2043 (2304)
..+++++......++++.++. ..+-+|+|. +-++|+.|.. .+. .........+..++..+.+|+|+
T Consensus 20 ~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa 99 (253)
T d1uiya_ 20 RNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVA 99 (253)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEE
Confidence 358999999999999999976 678877774 3455665542 111 12233456677889999999999
Q ss_pred EEcCCCcCCchhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2044 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2044 ~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
.|- |...+||..+++. .|+ .++.++++++.-+
T Consensus 100 av~-G~a~GgG~~lal~----~D~--ria~~~a~~~~~e 131 (253)
T d1uiya_ 100 AVN-GPAVAGGAGLALA----CDL--VVMDEEARLGYTE 131 (253)
T ss_dssp EEC-SCEETHHHHHHHT----SSE--EEEETTCEEECCH
T ss_pred EeC-eEEehhhHHHHhh----hhh--hhhhhhhHHhhhh
Confidence 998 3444445555554 477 8899999988644
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=1.1 Score=49.95 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=65.9
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecC-CCCCCchhh-h------------hhhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD-L------------FEGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~-~Gf~~G~~~-e------------~~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
.++.+.-.....++++.+.+...-+|+|.-. +.|+.|..- + .....+....++.++..+..|+|+.
T Consensus 25 Nals~~~~~el~~al~~~~~d~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 104 (258)
T d2fw2a1 25 NALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVS 104 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeeee
Confidence 5888999999999999887755555555433 458888531 1 1123345677888999999999999
Q ss_pred EcCCCcCCch-hhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |.+.|| .-+++. .|+ .++.++++++.
T Consensus 105 v~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 133 (258)
T d2fw2a1 105 VN--GPAIGLGASILPL----CDL--VWANEKAWFQT 133 (258)
T ss_dssp EC--SCEETHHHHTGGG----SSE--EEEETTCEEEC
T ss_pred cc--ccccccccccccc----ccc--cceecccceee
Confidence 97 555554 444443 477 78888888875
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.042 Score=52.24 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=35.8
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEcc
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEaM 721 (2304)
|.++.......|.||..|+|.++++++||.|+.|++|+.||.-
T Consensus 39 ~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~ 81 (87)
T d1k8ma_ 39 CEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (87)
T ss_dssp EEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred EEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 3344444446799999999999999999999999999999864
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.55 E-value=2.1 Score=47.73 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=66.7
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh--------------------hhHHHHHHHHHHHHHc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF--------------------EGILQAGSTIVENLRT 2036 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~--------------------~gilk~ga~iv~al~~ 2036 (2304)
..+.++-.....++++.++. ..+-+|+|.-. +.|+.|..-.. ...+.....++..+..
T Consensus 26 Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 105 (275)
T d1dcia_ 26 NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEK 105 (275)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHh
Confidence 58999999999999999977 56777777544 34776654211 1223345677888999
Q ss_pred CCCCEEEEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2037 YKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2037 ~~vP~i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
+..|+|+.|- |-+.| |.-+++. .|+ .+|.++++++.
T Consensus 106 ~~kPvIaav~--G~a~GgG~~lal~----~D~--ria~~~a~f~~ 142 (275)
T d1dcia_ 106 CPKPVIAAIH--GGCIGGGVDLISA----CDI--RYCTQDAFFQV 142 (275)
T ss_dssp SSSCEEEEEC--SEEETHHHHHHTT----SSE--EEEETTCEEEC
T ss_pred cCCCEEEEEe--eEeehhhHHHHhh----cCc--hhhccCccccc
Confidence 9999999998 55555 4544444 477 88888888875
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.48 E-value=0.013 Score=55.12 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=34.3
Q ss_pred cccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 681 LQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 681 ~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
++...-...|.||.+|+|.++++++||.|+.||+|+.||+
T Consensus 38 vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~ 77 (80)
T d1laba_ 38 VQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA 77 (80)
T ss_dssp EECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBC
T ss_pred EEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3344445679999999999999999999999999999985
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.92 E-value=0.1 Score=59.12 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=53.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccccccccccCccee----ecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREVYSSHMQLGGPKI----MAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~vy~s~~~lGG~~i----~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ...+....|........=+.|-.+ ...
T Consensus 107 ~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~ 186 (275)
T d1dcia_ 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALD 186 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHH
T ss_pred CCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccccccccccccccccccccccchhhhcc
Confidence 36999999999999999999999999999998655431 112222222110000001112112 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
-|++|.+++++.+.......+.
T Consensus 187 ~Glv~~v~~~~~~l~~~~~~~a 208 (275)
T d1dcia_ 187 SGLVSRVFPDKDVMLNAAFALA 208 (275)
T ss_dssp HTSSSEEESSHHHHHHHHHHHH
T ss_pred CCCceeeeehhhhhhhcccccc
Confidence 8999999987654444444443
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.12 Score=57.69 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=58.3
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecC-----------hHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG-----------~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
.|+|+.|.|.|+|||+.++..+|++|+.+++.+.+.. ..-+.+.+|... .-+.+.+.+.+ ..+.
T Consensus 99 kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e-A~~~ 177 (245)
T d2f6qa1 99 KPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGE-ACAQ 177 (245)
T ss_dssp SCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHH-HHHT
T ss_pred CceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhhhhccccccccccc-cccc
Confidence 6999999999999999999999999999997655432 223445556332 11112222222 2469
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
|++|.+++++ +..+.+++|..-+
T Consensus 178 Glv~~vv~~~-~l~~~a~~~a~~l 200 (245)
T d2f6qa1 178 GLVTEVFPDS-TFQKEVWTRLKAF 200 (245)
T ss_dssp TSCSEEECTT-THHHHHHHHHHHH
T ss_pred ccccccCCcc-hHHHHHHHHHHHH
Confidence 9999999754 4555666665433
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=90.72 E-value=0.026 Score=52.95 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=33.7
Q ss_pred ccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEEc
Q 000086 682 QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2304)
Q Consensus 682 ~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iEa 720 (2304)
+.......+.||..|+|.++++++|+.|+.||+|++||+
T Consensus 39 Et~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~ 77 (81)
T d1gjxa_ 39 ETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp ECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence 334444678999999999999999999999999999985
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=90.09 E-value=0.28 Score=47.24 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=63.5
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000086 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2304)
Q Consensus 47 ~~~kILIan~G~---------~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY 117 (2304)
|.+||+|+-+|. .|..+.+++++.||+++ .. |.+... .
T Consensus 1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~-----------~i--~~~~~~--------------------~ 47 (96)
T d1iowa1 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-----------PV--DPKEVD--------------------V 47 (96)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTTTSC--------------------G
T ss_pred CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEe-----------ee--cCcccc--------------------c
Confidence 567899998774 57788999999999975 22 221110 0
Q ss_pred cCHHHHHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHCCCeEECCCHHHHHHhcC
Q 000086 118 ANVQLIVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGD 172 (2304)
Q Consensus 118 ~dvd~Ii~iA~~~~vDaV~pG-~G~~SEn~~la~~l~~~GI~fiGPs~eam~~lgD 172 (2304)
. -.+..++|.|++. .|...|+-.++..|+..||++.|+++.+..++.|
T Consensus 48 ~-------~~~~~~~d~vF~~lHG~~GEdG~iQ~~le~l~IPytGs~~~asal~~D 96 (96)
T d1iowa1 48 T-------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD 96 (96)
T ss_dssp G-------GTTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHC
T ss_pred h-------hhhccCceeEEEeccCcchhccHHHHHHHHcCCCccCCCHHHHHHhcC
Confidence 0 0123357888875 5778899999999999999999999999988765
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.039 Score=51.65 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=35.2
Q ss_pred eccccCCCCCeeeeCCCceeEEEEccCCCEEccCCcEEEEE
Q 000086 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2304)
Q Consensus 679 ~~~~~~~dp~~l~APmPGkvv~~~V~~Gd~V~~G~~l~~iE 719 (2304)
+.++.+.-...|.||..|+|.++++++||.|+.||+|+.||
T Consensus 37 ~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~ 77 (80)
T d1pmra_ 37 VEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp CBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred EEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 33444555577999999999999999999999999999987
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=89.81 E-value=6.8 Score=44.51 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhh-hh-----------hhHHHHHHHHHHHHHcCCCCEEEE
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-LF-----------EGILQAGSTIVENLRTYKQPVFVY 2044 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~-e~-----------~gilk~ga~iv~al~~~~vP~i~~ 2044 (2304)
..+++....-..++++.++. ..+-+|+|... +.|+.|..- +. .........++..+..+.+|+|+.
T Consensus 30 Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 109 (310)
T d1wdka4 30 NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAA 109 (310)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceee
Confidence 47889999999999999977 56667777654 348877521 10 011123457888999999999999
Q ss_pred EcCCCcCCchhhhhcccccCCccceeecccCcEEEe
Q 000086 2045 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2045 I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|- |-..+||.-+++.+ |+ .+|.+++++|.
T Consensus 110 v~-G~a~GgG~elal~c----D~--ria~~~a~f~~ 138 (310)
T d1wdka4 110 IN-GIALGGGLEMCLAA----DF--RVMADSAKIGL 138 (310)
T ss_dssp EC-SCEETHHHHHHHTS----SE--EEEETTCEEEC
T ss_pred cc-ccccccccccchhh----hh--hhccccceecc
Confidence 88 34444455555543 66 77888888766
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=89.40 E-value=5.1 Score=44.47 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=67.0
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh--------------hhHHHHHHHHHHHHHcCCCCE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF--------------EGILQAGSTIVENLRTYKQPV 2041 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~--------------~gilk~ga~iv~al~~~~vP~ 2041 (2304)
..++++.......++++.+.. ..+-+|+|.-. ++|+.|..-.. .........+...+..+.+|+
T Consensus 24 ~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 103 (269)
T d1nzya_ 24 RNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV 103 (269)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchh
Confidence 358999999999999998877 45777777544 34888753210 111223456788899999999
Q ss_pred EEEEcCCCcCCc-hhhhhcccccCCccceeecccCcEEEeeC
Q 000086 2042 FVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2082 (2304)
Q Consensus 2042 i~~I~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gvl~ 2082 (2304)
|+.|- |-+.| |.-+++. .|+ .++.++++++..+
T Consensus 104 Iaav~--G~a~GgG~~lal~----~D~--ria~~~a~~~~~~ 137 (269)
T d1nzya_ 104 LAAIN--GVAAGGGLGISLA----SDM--AICADSAKFVCAW 137 (269)
T ss_dssp EEEEC--SEEETHHHHHHHH----SSE--EEEETTCEEECCH
T ss_pred ehhhh--hhcCCCceeeeec----ccH--hhhhhhhhhcccc
Confidence 99998 55555 5544554 477 7888888776633
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.95 E-value=2.8 Score=46.63 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCC-C-CCCchhhh---------hhhHHHHHHHHHHHHHcCCCCEEEEE
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-G-FSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYI 2045 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~-G-f~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~~I 2045 (2304)
..+|+........++++.++. ..+-+|+|.-.. + |++|.... .....+....++.++..+..|+|+.|
T Consensus 27 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav 106 (266)
T d1hzda_ 27 KNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAI 106 (266)
T ss_dssp TTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCccccccc
Confidence 358889999999999999986 678888886543 4 66664321 22334556778888999999999999
Q ss_pred cCCCcCCc-hhhhhcccccCCccceeecccCcEEEe
Q 000086 2046 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2046 ~~~ge~~G-Ga~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
- |-+.| |..+++. .|+ ++|.++++++.
T Consensus 107 ~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 134 (266)
T d1hzda_ 107 D--GLALGGGLELALA----CDI--RVAASSAKMGL 134 (266)
T ss_dssp S--EEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred c--cccccccceeccc----cce--eeecCCcEEee
Confidence 8 44455 5555554 477 88999998875
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=88.18 E-value=0.16 Score=56.75 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=55.4
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcce---------Eec----ChHHHHHhhcccc----cccccccCcceeec
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI---------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMA 1842 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i---------~lt----G~~al~~~lG~~v----y~s~~~lGG~~i~~ 1842 (2304)
.|+|+.|.|.|.|||+-++..+|++|+.+++.. ++. |..-+.+.+|... .-+.+.+.+.+ +.
T Consensus 97 kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~-A~ 175 (249)
T d1sg4a1 97 LVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAE-AL 175 (249)
T ss_dssp SEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHH-HH
T ss_pred cccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccHHH-HH
Confidence 699999999999999999999999999988642 221 1122334455322 11223333333 45
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000086 1843 TNGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1843 ~nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
..|++|.++++ .+..+.+++|..
T Consensus 176 ~~Glv~~v~~~-~~l~~~a~~~a~ 198 (249)
T d1sg4a1 176 QVGIVDQVVPE-EQVQSTALSAIA 198 (249)
T ss_dssp HHTSSSEEECG-GGHHHHHHHHHH
T ss_pred hhccccccCCh-HHHHHHHHHHHH
Confidence 79999999964 445555555543
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.04 E-value=3.6 Score=45.61 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchh--------------------hhhhhHHHHHHHHHHHHHc
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQR--------------------DLFEGILQAGSTIVENLRT 2036 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~--------------------~e~~gilk~ga~iv~al~~ 2036 (2304)
.++.++.......+++.+++ .++=+|+|.-. +.|+.|.. ......+.....+...+..
T Consensus 27 Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (266)
T d1pjha_ 27 NALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIK 106 (266)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999987 56778887443 33777742 1112234455668888999
Q ss_pred CCCCEEEEEcCCCcCCchhhhhcccccCCccceeeccc-CcEEEe
Q 000086 2037 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADR-TAKGNV 2080 (2304)
Q Consensus 2037 ~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p-~A~~gv 2080 (2304)
+.+|+|+.|- |..++||..+++.+ |+ ++|.+ ++.++.
T Consensus 107 ~~kP~IAav~-G~a~GgG~~lal~~----D~--~ia~~~~~~~~~ 144 (266)
T d1pjha_ 107 HSKVLICCLN-GPAIGLSAALVALC----DI--VYSINDKVYLLY 144 (266)
T ss_dssp CCSEEEEEEC-SCEEHHHHHHHHHS----SE--EEESSTTCEEEC
T ss_pred cchhhhhhhh-cccccccccchhcc----ch--hhhhhccccccc
Confidence 9999999998 44555566666654 66 67644 455554
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=87.95 E-value=3.1 Score=45.96 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=66.6
Q ss_pred CccCHHHHHHHHHHHHHhhc-cCCCEEEEe-cCCCCCCchh---------hhhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNR-EELPLFILA-NWRGFSGGQR---------DLFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~-~~lPLv~l~-d~~Gf~~G~~---------~e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
..+.+.......++++.+++ .++=+|+|. +-+.|+.|.. ......+..+..++.++..+.+|+|+.|-
T Consensus 35 Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~- 113 (249)
T d1szoa_ 35 LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVN- 113 (249)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeec-
Confidence 58899999999999999877 456556554 3344776642 23344455677889999999999999884
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEE
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGN 2079 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~g 2079 (2304)
|.+.||...++. .|+ .++.+++++.
T Consensus 114 -g~~~GG~~l~l~----~D~--ria~~~a~f~ 138 (249)
T d1szoa_ 114 -GPVTNAPEIPVM----SDI--VLAAESATFQ 138 (249)
T ss_dssp -SCBCSSTHHHHT----SSE--EEEETTCEEE
T ss_pred -cccccccccccc----ccc--ccccCCcEEE
Confidence 666676655554 366 7888887764
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=87.95 E-value=0.53 Score=52.70 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=55.2
Q ss_pred ceEEEEEcCcccchhhhhhcccCEEEEecCcceEecCh--------HHH---HHhhcccccccccccCccee----eccc
Q 000086 1780 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF--------SAL---NKLLGREVYSSHMQLGGPKI----MATN 1844 (2304)
Q Consensus 1780 iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~ltG~--------~al---~~~lG~~vy~s~~~lGG~~i----~~~n 1844 (2304)
.|+|+.|.|.|+|||..++..||++|+.+++.+.+.-. ..+ -+.+|..... ..=+.|-.+ ....
T Consensus 97 kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~-~~~l~g~~~~a~eA~~~ 175 (261)
T d1ef8a_ 97 KPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVK-ELIFTASPITAQRALAV 175 (261)
T ss_dssp SCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHH-HHHHHCCCEEHHHHHHT
T ss_pred hhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccccc-cccccCceEcHHHHHHc
Confidence 69999999999999999999999999999986543311 111 1112221100 000111111 2369
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000086 1845 GVVHLTVSDDLEGISAILKWLSYV 1868 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~Lsyl 1868 (2304)
|++|.+++ +.+..+.+.+|..-+
T Consensus 176 Glv~~vv~-~~~~~~~a~~~a~~l 198 (261)
T d1ef8a_ 176 GILNHVVE-VEELEDFTLQMAHHI 198 (261)
T ss_dssp TSCSEEEC-HHHHHHHHHHHHHHH
T ss_pred CCcceeee-chhhhhhhHHHHHHH
Confidence 99999995 556667777776655
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.15 Score=57.31 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=58.1
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEe-----------cChHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-----------TGFSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~l-----------tG~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||+-++..+|++|+.+++.+.+ .|...+.+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~e-A~~ 176 (258)
T d2fw2a1 98 KKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTARE-ACA 176 (258)
T ss_dssp CSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHH-HHH
T ss_pred ceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCccccchhhccCccccccc-ccc
Confidence 369999999999999999999999999999976432 13334555555532 11222222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLSY 1867 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Lsy 1867 (2304)
-|++|.+++++ +..+.+..|..-
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~~ 199 (258)
T d2fw2a1 177 KGLVSQVFLTG-TFTQEVMIQIKE 199 (258)
T ss_dssp TTSCSEEECST-THHHHHHHHHHH
T ss_pred ccccccccccc-ccccccchhhhh
Confidence 99999999754 455555555543
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=87.29 E-value=2.4 Score=47.15 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=67.2
Q ss_pred CccCHHHHHHHHHHHHHhhccCCCEEEEecCC-C--CCCchhh--------hhhhHHHHHHHHHHHHHcCCCCEEEEEcC
Q 000086 1979 QVWFPDSATKTAQALMDFNREELPLFILANWR-G--FSGGQRD--------LFEGILQAGSTIVENLRTYKQPVFVYIPM 2047 (2304)
Q Consensus 1979 g~~~p~sa~K~a~~i~~~~~~~lPLv~l~d~~-G--f~~G~~~--------e~~gilk~ga~iv~al~~~~vP~i~~I~~ 2047 (2304)
.+++++......++++.++...+-.|+|.-.. | |+.|..= .........-.++..+..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~- 104 (261)
T d1ef8a_ 26 NALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVE- 104 (261)
T ss_dssp TCCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhccc-
Confidence 57889999999999999877667677776543 3 8877431 1111223456788999999999999998
Q ss_pred CCcCCchhhhhcccccCCccceeecccCcEEEee
Q 000086 2048 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2081 (2304)
Q Consensus 2048 ~ge~~GGa~vv~~~~i~~d~~~~~A~p~A~~gvl 2081 (2304)
|...+||..+++.+ |+ .+|.++++++.-
T Consensus 105 G~a~GgG~~lal~c----D~--ria~~~a~~~~p 132 (261)
T d1ef8a_ 105 GSVWGGAFEMIMSS----DL--IIAASTSTFSMT 132 (261)
T ss_dssp SEEETHHHHHHHHS----SE--EEEETTCEEECC
T ss_pred ccccchhhhhhhhh----hh--hhhhHhHHHhhh
Confidence 34444566656554 77 788888887643
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=86.80 E-value=0.2 Score=57.88 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=57.4
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhcccccccccccCccee----ecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy~s~~~lGG~~i----~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-..+|..... ..-+.|-.+ ...
T Consensus 103 ~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~-~lll~g~~~~a~eA~~ 181 (310)
T d1wdka4 103 NVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAV-EWIASGKENRAEDALK 181 (310)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH-HHHHHCCCEEHHHHHH
T ss_pred CccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhh-hhhccccccCHHHHhh
Confidence 4699999999999999999999999999999876552 223445555543210 111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000086 1844 NGVVHLTVSDDLEGISAILKWLS 1866 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~Ls 1866 (2304)
-|++|.++++ .+..+...+|..
T Consensus 182 ~Glv~~vv~~-~~l~~~a~~~a~ 203 (310)
T d1wdka4 182 VSAVDAVVTA-DKLGAAALDLIK 203 (310)
T ss_dssp TTSSSEEECG-GGHHHHHHHHHH
T ss_pred ccCccEEccH-HHHHHHHHHHHH
Confidence 9999999975 444555555543
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.36 E-value=3.2 Score=45.69 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=62.8
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecCCC-CCCchhh--hhhh-----HHHHHHHHHHHHHcCCCCEEEEEcCC
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD--LFEG-----ILQAGSTIVENLRTYKQPVFVYIPMM 2048 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~~G-f~~G~~~--e~~g-----ilk~ga~iv~al~~~~vP~i~~I~~~ 2048 (2304)
..++.++-.....++++.+++ ..+-+|+|.-..+ |+.|..- .... .....-.++..+..+.+|+|+.|-
T Consensus 28 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~-- 105 (260)
T d1mj3a_ 28 LNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVN-- 105 (260)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEc--
Confidence 358999999999999999877 5677777754433 7777421 1110 011122335667889999999998
Q ss_pred CcCCch-hhhhcccccCCccceeecccCcEEEe
Q 000086 2049 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2080 (2304)
Q Consensus 2049 ge~~GG-a~vv~~~~i~~d~~~~~A~p~A~~gv 2080 (2304)
|-+.|| .-+++. .|+ ++|.++++++.
T Consensus 106 G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 132 (260)
T d1mj3a_ 106 GYALGGGCELAMM----CDI--IYAGEKAQFGQ 132 (260)
T ss_dssp SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred CeEeHHHHHHHHH----CCE--EEEcCCCEEEC
Confidence 555554 444444 477 88888888876
|
| >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.20 E-value=0.18 Score=55.01 Aligned_cols=40 Identities=15% Similarity=0.413 Sum_probs=33.5
Q ss_pred EEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000086 716 AEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2304)
Q Consensus 716 ~~iEaMKm~~~l~ap~~G~V~~i-~~~G~~v~~G~~La~l~~ 756 (2304)
..||+.+. .+|.|+.+|+|..+ |++|+.|.+||+|++|+.
T Consensus 8 G~i~a~~~-~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 48 (237)
T d1vf7a_ 8 GRTNAFRI-AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 48 (237)
T ss_dssp EECEESCE-EEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEeeEE-EEEEeecCEEEEEEECCCcCEECCCCEEEEEeh
Confidence 34566544 46999999999999 999999999999999854
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.06 E-value=3.6 Score=46.46 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=59.6
Q ss_pred CCccCHHHHHHHHHHHHHhhc-cCCCEEEEecC-CCCCCchhhhh---------------------------hhHHHHHH
Q 000086 1978 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF---------------------------EGILQAGS 2028 (2304)
Q Consensus 1978 gg~~~p~sa~K~a~~i~~~~~-~~lPLv~l~d~-~Gf~~G~~~e~---------------------------~gilk~ga 2028 (2304)
-.++.+........+++.+++ ..+-+|+|.-. ++|..|..+-. ........
T Consensus 41 ~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (297)
T d1q52a_ 41 RNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHIL 120 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHH
Confidence 358999999999999999987 57888887554 33332211100 00011123
Q ss_pred HHHHHHHcCCCCEEEEEcCCCcCCchhhhhcccccCCccceeecccC-cEEEee
Q 000086 2029 TIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVL 2081 (2304)
Q Consensus 2029 ~iv~al~~~~vP~i~~I~~~ge~~GGa~vv~~~~i~~d~~~~~A~p~-A~~gvl 2081 (2304)
.+...+..+.+|+|+.|- |...+||..+++.+ |+ +++.++ ++++.-
T Consensus 121 ~~~~~i~~~~kPvIaav~-G~a~GGG~~lal~~----D~--~ia~~~~~~f~~p 167 (297)
T d1q52a_ 121 EVQRLIRFMPKVVICLVN-GWAAGGGHSLHVVC----DL--TLASREYARFKQT 167 (297)
T ss_dssp HHHHHHHHSSSEEEEEEC-SEEETHHHHHHHHS----SE--EEEETTTCEEECC
T ss_pred HHHHHHHhcCCeEEEEEc-ceeeeccchhhhhh----hc--cccccccccceee
Confidence 577788899999999998 34445555556554 44 555443 345543
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=82.57 E-value=0.33 Score=54.71 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=55.2
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec----------C-hHHHHHhhcccc----cccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------G-FSALNKLLGREV----YSSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt----------G-~~al~~~lG~~v----y~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||+.++..+|++|+.+++.+.+. | ...+...+|... .-+.+.+.+.+ ...
T Consensus 100 ~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~e-A~~ 178 (269)
T d1nzya_ 100 KRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEE-AKD 178 (269)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHH-HHH
T ss_pred cchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhhhhccccccccchhH-HHH
Confidence 3599999999999999999999999999998763322 1 122333344322 11223332222 356
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~L 1865 (2304)
.|++|.+++ +.+..+.+.+|.
T Consensus 179 ~Glv~~vv~-~~~l~~~a~~~a 199 (269)
T d1nzya_ 179 WGLVSRVYP-KDEFREVAWKVA 199 (269)
T ss_dssp HTSCSCEEC-HHHHHHHHHHHH
T ss_pred cCCcccccc-ccccccchhhhh
Confidence 999999996 444455555554
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.04 E-value=0.38 Score=53.60 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=54.5
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec-----------ChHHHHHhhccccc----ccccccCcceeecc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1843 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt-----------G~~al~~~lG~~vy----~s~~~lGG~~i~~~ 1843 (2304)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+.+.+|.... -+...+.+.+ ...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~e-A~~ 175 (260)
T d1mj3a_ 97 KKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQD-AKQ 175 (260)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchh-hcc
Confidence 3699999999999999999999999999999876553 12235555554321 1112222222 246
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000086 1844 NGVVHLTVSDDLEGISAILKW 1864 (2304)
Q Consensus 1844 nGv~d~~v~dd~~~~~~i~~~ 1864 (2304)
-|++|.+++++. ..+.+..+
T Consensus 176 ~Glv~~v~~~~~-~~~~a~~~ 195 (260)
T d1mj3a_ 176 AGLVSKIFPVET-LVEEAIQC 195 (260)
T ss_dssp HTSCSEEECTTT-HHHHHHHH
T ss_pred CCCceeeecccc-cccccccc
Confidence 899999886553 33334443
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=80.92 E-value=0.43 Score=52.59 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=56.6
Q ss_pred cceEEEEEcCcccchhhhhhcccCEEEEecCcceEec----------ChHHHHHhhcccc----cccccccCcceeeccc
Q 000086 1779 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1844 (2304)
Q Consensus 1779 ~iptis~vtg~t~G~gAyl~~lgd~~I~~~~~~i~lt----------G~~al~~~lG~~v----y~s~~~lGG~~i~~~n 1844 (2304)
..|+|+.|.|.|+|||..++..+|++|+.+++.+.+. |...+.+.+|... .-+.+.+.+.+ ...-
T Consensus 94 ~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~~ 172 (230)
T d2a7ka1 94 NKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPR-CVDY 172 (230)
T ss_dssp CSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHH-HHHH
T ss_pred hcceeeecccccccccccchhccchhhccccchhhhccccccccccccccccccccccccccccccccccchHHH-HHHh
Confidence 4699999999999999999999999999999764432 1122444455322 11223332222 4579
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000086 1845 GVVHLTVSDDLEGISAILKWL 1865 (2304)
Q Consensus 1845 Gv~d~~v~dd~~~~~~i~~~L 1865 (2304)
|++|.++++ .+..+.+.+|.
T Consensus 173 Glv~~vv~~-~~l~~~a~~~a 192 (230)
T d2a7ka1 173 RLVNQVVES-SALLDAAITQA 192 (230)
T ss_dssp TCCSEEECH-HHHHHHHHHHH
T ss_pred hhcccCCCh-HHHHHHHHHHH
Confidence 999999974 55555555553
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.70 E-value=2.4 Score=44.95 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=66.5
Q ss_pred ccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000086 48 IHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2304)
Q Consensus 48 ~~kILIan-~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~i 126 (2304)
|+||||+| .|.++..+++.+.+.||++. ++.- +..........--+.+.. ++.|.+.+.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~---------~~~R--~~~~~~~~~~~~~~~~~g-------D~~d~~~l~~a 64 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVT---------VLVR--DSSRLPSEGPRPAHVVVG-------DVLQAADVDKT 64 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEE---------EEES--CGGGSCSSSCCCSEEEES-------CTTSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEE---------EEEc--Chhhcccccccccccccc-------cccchhhHHHH
Confidence 68999999 59999999999999999874 2221 211111111111122222 45666777666
Q ss_pred HHHcCCCEEEeCCCcCCCC-C---------chHHHHHHCCCe---EEC----------CCHHHHHHhcCHHHHHHHHHHC
Q 000086 127 AEMTRVDAVWPGWGHASEI-P---------ELPDTLSTKGII---FLG----------PPATSMAALGDKIGSSLIAQAA 183 (2304)
Q Consensus 127 A~~~~vDaV~pG~G~~SEn-~---------~la~~l~~~GI~---fiG----------Ps~eam~~lgDK~~sr~laq~a 183 (2304)
.+ ++|+|+...|..... + .+.+++.+.|+. +++ .++.......+|..+.+++++.
T Consensus 65 l~--~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~ 142 (205)
T d1hdoa_ 65 VA--GQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRES 142 (205)
T ss_dssp HT--TCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHHT
T ss_pred hc--CCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccccccccccchHHHHHHHHHHhc
Confidence 65 468877665543211 1 122344444432 222 1111124456788888888888
Q ss_pred CCC
Q 000086 184 NVP 186 (2304)
Q Consensus 184 GVP 186 (2304)
|++
T Consensus 143 ~~~ 145 (205)
T d1hdoa_ 143 GLK 145 (205)
T ss_dssp CSE
T ss_pred CCc
Confidence 875
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.30 E-value=1.1 Score=44.30 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=64.1
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeE-EEEEeccCCCCCChhhhhccEEE-EccCCCCCCCccCHH
Q 000086 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILL-VAMATPEDMRINAEHIRIADQFV-EVPGGTNNNNYANVQ 121 (2304)
Q Consensus 48 ~~kILIan~----G~~Av~iIrsar~~Gy~v~~~~~~i~~-v~vat~~D~~~~a~~ir~ADe~v-~vp~~~~~~sY~dvd 121 (2304)
+|+|.|+|. +-.+-++++.+++.||+++..+..-.. -.+-++.+...-.. --|-.+ .+|. . .+.
T Consensus 1 ~KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~---~~D~vvi~vp~-----~--~~~ 70 (116)
T d1y81a1 1 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPK---DVDVIVFVVPP-----K--VGL 70 (116)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCT---TCCEEEECSCH-----H--HHH
T ss_pred CcEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccc---cceEEEEEeCH-----H--HHH
Confidence 478999994 557899999999999987632211111 11122222211111 123332 3332 2 256
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCC
Q 000086 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPP 163 (2304)
Q Consensus 122 ~Ii~iA~~~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs 163 (2304)
.+++-|.+.++.++|.--|. ++.++.+.++++|+.++||.
T Consensus 71 ~~l~~~~~~g~k~v~~~~g~--~~~~~~~~a~~~gi~vigpn 110 (116)
T d1y81a1 71 QVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGR 110 (116)
T ss_dssp HHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSC
T ss_pred HHHHHHHhcCCceEEeccch--hhHHHHHHHHHcCCEEEcCC
Confidence 66777778899999976553 55568899999999999985
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.17 E-value=0.47 Score=45.04 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=53.7
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000086 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2304)
Q Consensus 50 kILIan~G~~Av~iIrsar~~Gy~v~~~~~~i~~v~vat~~D~~~~a~~ir~ADe~v~vp~~~~~~sY~dvd~Ii~iA~~ 129 (2304)
||||+|+|.---.++.++.+-..+++ +.|. |+--..++. . .+.+.+..++.+
T Consensus 2 kVLviGsGgREHAia~~l~~s~~~v~-----------~~pG----N~G~~~~~~---~----------~~~~~~~~~~~~ 53 (90)
T d1vkza2 2 RVHILGSGGREHAIGWAFAKQGYEVH-----------FYPG----NAGTKRDGT---N----------HPYEGEKTLKAI 53 (90)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEE-----------EEEC----CTTGGGTSE---E----------CCCCTHHHHHTS
T ss_pred EEEEECCCHHHHHHHHHHhcCCCeEE-----------EecC----Cccccccce---e----------ccchhhHHHHHh
Confidence 89999999877777778877655443 3332 332222221 1 123567888999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHCCCeEECCCHHHHHHh
Q 000086 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170 (2304)
Q Consensus 130 ~~vDaV~pG~G~~SEn~~la~~l~~~GI~fiGPs~eam~~l 170 (2304)
.++|.|+.| .|.|.. .-+....+.++||+.+++++-
T Consensus 54 ~~idlviIG----PE~pL~-~Gi~D~~~~vfGP~k~aA~lE 89 (90)
T d1vkza2 54 PEEDIVIPG----SEEFLV-EGVSNWRSNVFGPVKEVARLE 89 (90)
T ss_dssp CSSCEECCS----SGGGTC-C-----CTTBSSCCHHHHHHH
T ss_pred ccceeEEEC----hHHHHH-HHHHHhCCcccCcCHHHHhcc
Confidence 999999988 333322 223333455789999988764
|