Citrus Sinensis ID: 000098
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2256 | 2.2.26 [Sep-21-2011] | |||||||
| Q92616 | 2671 | Translational activator G | yes | no | 0.961 | 0.812 | 0.334 | 0.0 | |
| Q54WR2 | 2667 | Translational activator g | yes | no | 0.852 | 0.721 | 0.326 | 0.0 | |
| Q10105 | 2670 | Translational activator g | yes | no | 0.647 | 0.547 | 0.333 | 0.0 | |
| P33892 | 2672 | Translational activator G | yes | no | 0.529 | 0.446 | 0.368 | 0.0 | |
| O94489 | 1047 | Elongation factor 3 OS=Sc | no | no | 0.117 | 0.254 | 0.340 | 6e-36 | |
| O14134 | 1057 | mRNA export factor elf1 O | no | no | 0.121 | 0.258 | 0.316 | 3e-32 | |
| P29551 | 1042 | Elongation factor 3 OS=Pn | N/A | no | 0.121 | 0.263 | 0.304 | 4e-32 | |
| P25997 | 1050 | Elongation factor 3 OS=Ca | N/A | no | 0.136 | 0.294 | 0.282 | 2e-27 | |
| P53978 | 1044 | Elongation factor 3B OS=S | no | no | 0.105 | 0.227 | 0.313 | 2e-26 | |
| P16521 | 1044 | Elongation factor 3A OS=S | no | no | 0.105 | 0.227 | 0.296 | 3e-26 |
| >sp|Q92616|GCN1L_HUMAN Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6 | Back alignment and function desciption |
|---|
Score = 1131 bits (2925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/2319 (33%), Positives = 1227/2319 (52%), Gaps = 149/2319 (6%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S+TL A V+T+S K R+ I ++ + ++ L + T Y D S
Sbjct: 8 SETLKRFAGKVTTASVKERREIL-SELGKCVAGKDLPEGAVKGLCKLFCLTLHRYRDAAS 66
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVG---------CYRLLKWSCLL 117
R+A+ I++ L E T A L+ +++ S S G L W+CLL
Sbjct: 67 RRALQAAIQQ-LAEAQPEAT-AKNLLHSLQS-SGIGSKAGVPSKSSGSAALLALTWTCLL 123
Query: 118 LSKSQFATVSK---NALCRVAAAQASLLHIVMQRSFRER-RACKQTFFHLFSQSPDIYKT 173
+ + F + +K + ++ Q LL V+ S + + L+ ++P + +
Sbjct: 124 V-RIVFPSRAKRQGDIWNKLVEVQCLLLLEVLGGSHKHAVDGAVKKLTKLWKENPGLVEQ 182
Query: 174 YTDELKDARIPYKHSPELICLLLEFLS--KSPSLFEKCRPIFLDIYVKAVLNAKEKPMKG 231
Y + P ++ ++ LL++F + K + + + LD Y+K +L +K KP K
Sbjct: 183 YLSAILSLE-PNQNYAGMLGLLVQFCTSHKEMDVVSQHKSALLDFYMKNILMSKVKPPKY 241
Query: 232 LSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILS 291
L +S PL ++S +F+ ++LP K L R+PE ++E+I LL SV LDLS+YA +I+
Sbjct: 242 LLDSCAPLLRYLSHSEFKDLILPTIQKSLLRSPENVIETISSLLASVTLDLSQYAMDIVK 301
Query: 292 VVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIG 351
+ ++ A+ + L+ + S+ A+E++ + A++GGSEG+L Q++
Sbjct: 302 GLAGHLKSNSPRLMDEAVLALRNLARQCSDSSAMESLTKHLFAILGGSEGKLTVVAQKMS 361
Query: 352 MVNALQELS-NATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADII 410
+++ + +S + G L+ + + + + E +E + +S +A W R +
Sbjct: 362 VLSGIGSVSHHVVSGPSSQVLNGIVAELFIPFLQQEVHEGTLVHAVSVLALWCNRFTMEV 421
Query: 411 QSDLLSFFASGLKEK---EALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKA 467
L +F K A+R +L+C+ + D +LQ LL LIQ V+ +++
Sbjct: 422 PKKLTEWFKKAFSLKTSTSAVRHAYLQCM-LASYRGDTLLQALDLLPLLIQTVEKAASQS 480
Query: 468 VQR---LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDC 524
Q +G+ A L++ K++ AD +AE ++ W L+ + + + ++ +D
Sbjct: 481 TQVPTITEGVAAALLLLKLSVADSQAEAKLS--SFWQLIVDEKKQVFTSEKFLVMASEDA 538
Query: 525 MACV-ELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVP- 582
+ V L L ++H HR L V+ + ++ +W +R+ A RK+++S+
Sbjct: 539 LCTVLHLTERLFLDHPHR-LTGNKVQQYHRALVAVLLSRTWHVRRQAQQTVRKLLSSLGG 597
Query: 583 -HLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA 641
L+ LL E LS + + +D + ++ ++P +Q + L VI+ V
Sbjct: 598 FKLAHGLLEELKTVLSSHKVLPLEALVTDAGEVTEAGKAYVPPRVLQ-EALCVISGVPGL 656
Query: 642 RG-----PSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCK 696
+G + ++ SHHPS+V + +W L L + + ++ + +
Sbjct: 657 KGDVTDTEQLAQEMLIISHHPSLVAV--QSGLWPAL---LARMKIDPEAFITRHLDQI-- 709
Query: 697 VLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQ 756
+ M+ Q+++N++ +L ++P + ++ +
Sbjct: 710 -----IPRMTTQSPLNQSSMNAMGSLSVLSPDRVLPQLISTITASVQNPALRLVTREEFA 764
Query: 757 VFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREV 816
+ TP G L Y I+ + +QD + K S ++
Sbjct: 765 IMQTPAGEL------YDKSIIQSA-------------QQDSIKKANMKRENKAYSFKEQI 805
Query: 817 SGAGKKDIGKSTKKADKGKTAKEEARELL---LNEEASIREKVQGVQRNLSLMLSALGEM 873
K+ K K + + +E+L L+ EA +R ++Q + L L L +
Sbjct: 806 IELELKEEIKKKKGIKEEVQLTSKQKEMLQAQLDREAQVRRRLQELDGELEAALGLLDII 865
Query: 874 AIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATA--- 930
NP +P LV PLL+SP+ + L+ C MP AL +
Sbjct: 866 LAKNPSGLTQYIPVLVDSFLPLLKSPLAAPRIKNPFLSLAACV-MPSRLKALGTLVSHVT 924
Query: 931 LRLI----VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFV 986
LRL+ V ++ +L +V A + + R+ G + PL +F+ V
Sbjct: 925 LRLLKPECVLDKSWCQEELSVAVKRAVMLLHTHTITSRVGKG---EPGAAPLSAPAFSLV 981
Query: 987 FPIIERILL-----SPKRTGLHDDVLQMLYKHMD----PLLP-----------LPRLRMI 1026
FP ++ +L S + +LQ+L P P LPR+ M+
Sbjct: 982 FPFLKMVLTEMPHHSEEEEEWMAQILQILTVQAQLRASPNTPPGRVDENGPELLPRVAML 1041
Query: 1027 SVLYHVLGV-VPSYQAAIGSALNELCLG---------LQPNEVASALHGVYTKDVHVRMA 1076
+L V+G P Q L LC + EV L + + VR
Sbjct: 1042 RLLTWVIGTGSPRLQVLASDTLTTLCASSSGDDGCAFAEQEEVDVLLCALQSPCASVRET 1101
Query: 1077 CLNAV----KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY 1132
L + +PA T + + LW+ D E+ + + AE +W G D D
Sbjct: 1102 VLRGLMELHMVLPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDL 1160
Query: 1133 -SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA-- 1189
S L + + VR A AEAL+ A+ Y + L +Y + +DA
Sbjct: 1161 CSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLDALG 1220
Query: 1190 ---------GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAG 1240
W R G+ALAL+ + L + + + F + AL D + DVR ML+A
Sbjct: 1221 RVISESPPDQWEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAA 1280
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ ++ HG++NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV
Sbjct: 1281 LATLNTHGKENVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKP 1339
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
+V KL+ L+TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+
Sbjct: 1340 IVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAY 1399
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+
Sbjct: 1400 GLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVH 1459
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LP LL+ F D VREAA+ A+A+MS LSA GVKLVLPSLL LE+++WRTK SV+
Sbjct: 1460 VLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVE 1519
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P
Sbjct: 1520 LLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAP 1579
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+
Sbjct: 1580 VLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQII 1639
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+
Sbjct: 1640 GNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLP 1698
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLT 1718
WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+
Sbjct: 1699 WLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIM 1758
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP
Sbjct: 1759 MFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLP 1818
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
+E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG
Sbjct: 1819 QLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALG 1878
Query: 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS 1898
++RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ LAS+
Sbjct: 1879 VERRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTC 1938
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S +
Sbjct: 1939 ADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDA 1998
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
+L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S
Sbjct: 1999 VLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVS 2058
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA
Sbjct: 2059 EFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPA 2115
Query: 2079 LLSAMGDD--DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
++ A+ + D Q + V D+ G ++ LL+ + +R+++A ++
Sbjct: 2116 VMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIIL 2175
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
+ SK +++S LI L +DS + +W+AL+ + + Q + I+ +
Sbjct: 2176 NIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEEL 2235
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIF 2234
I ++ + + +PGFCLP K + +LP+
Sbjct: 2236 HKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVL 2268
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Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating GCN2 protein kinase (EIF2AK1-4) activity. Homo sapiens (taxid: 9606) |
| >sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/2114 (32%), Positives = 1108/2114 (52%), Gaps = 190/2114 (8%)
Query: 213 FLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIG 272
L+IY K V+ + ++ ++ + F LF ++ ED QSI+LP + +KR+ + + + +
Sbjct: 260 LLNIYNKTVIGSSQQKIEE-HKFFKRLFNQLTNEDLQSIILPPLSRHIKRDQDQVFKILI 318
Query: 273 ILLKSVNLDLS---------KYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPD 323
+L++++ D + +L V+ +E RK T + E+S +
Sbjct: 319 FILENLSSDFNVIDLSSLLKSMLLPMLLPVIQSTISIEENRKLLKKT-FTLIIERSKDTK 377
Query: 324 ALEAM----FYAIKAVIGGSEGRLAFPYQRIGMV---NALQELSNATE-----GKYLNSL 371
+ +M +V G +L ++ N ++ LS TE + L S+
Sbjct: 378 LISSMITDDLLKTLSVAGNPSQKLIIISIISSIISTKNFIERLSLTTEKLQLSKQILQSI 437
Query: 372 SLTICKFLLSCYKDEGNEEVKL--AILSAVASWAKRSADIIQSDLLSFFASGLKEKEALR 429
S+ + K L KD N+ KL ++ V +++ II + LK + +
Sbjct: 438 SIYLEKEL---NKDNRNKGFKLLGKVMKMVEELPEQTIKII--------TNSLKNDDDII 486
Query: 430 RGHLRCLRVICTNTDAVLQVSSLLGP--------LIQLVKTGFTKAVQ------------ 469
+G + +L +S LGP +IQ++ GFT+ +
Sbjct: 487 KGQV------------ILSLSKSLGPEANGTNKKVIQII-NGFTETINTILKNVKNAKTC 533
Query: 470 -------RLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVD 522
L + + + + DI + + K + +L + L I + S
Sbjct: 534 DPSTTTASLHYMLSLITTTGVPKNDIFTKYSTDKTTISNLYASTS-FLHTDGFIQRTSKK 592
Query: 523 DCMACVELLVVLLVEHSHRVLETFSVKL-----LLQLVLLFTCHPSWDIRKMAHDATRKI 577
D ++LL+ L + RV S+KL L VL H W + K + R I
Sbjct: 593 D--HAIDLLLTLFL----RVKSFPSIKLNDKSPLYSSVLNCLLHSQWSVSKHSAIKIRSI 646
Query: 578 IT-------SVPHLSEALLLEFSNFL---SLVGEKIIISKTSDTDDFVDSQVPFLPSVEV 627
++ P LS LL+EFS L SL+ II+ ++ + + + +
Sbjct: 647 LSRNDSVDIDYPLLSNQLLIEFSTILFDDSLIITPQIINSNVESTTTTTTTISNKKNYLI 706
Query: 628 QVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIV 687
+++L ++ P S + C +HP I + W+R+ ++ +V +
Sbjct: 707 AFRSILS-KNIKSELYPMLS---LIC-YHPFI------NYNWKRVSSLIQN---DVNTTL 752
Query: 688 SADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVH 747
S++ + K + N QQA +++ LM+ + + E+ +K + +
Sbjct: 753 SSNAIEISKYIFEKGLNQKKNKSYQQAFQQAINGLMNY---NVPLLNEELVKLMVKALSY 809
Query: 748 D---SLSENDIQVFYT-PEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
+ ++++ +++T P + +Q ++V ++N ++ K + EEQ
Sbjct: 810 EPVLAITQQQWSIYHTLPTELFVEKQ----EQLVESRNDRKVKP--KTAEEQ-------- 855
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA-RELLLNEEASIREKVQGVQRN 862
+ E + + + + KK G+ K+E R+ L +A IR+ VQ V
Sbjct: 856 ----RDEESRKRI---------EEKKKIQSGELEKQEKERQKQLAAQAVIRKDVQDVIDR 902
Query: 863 LSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPL 920
L L + MA +NP F + ++ + L++ I + KL C
Sbjct: 903 LHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVFEKLICCVP--- 959
Query: 921 CNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPV 980
+ LD + A I P++ E + L ++I+ + S L
Sbjct: 960 SRFKLDRSFARHYIYIINNIYYR---PTLSEI----QILGFIQKILTHIRESIAKEALSG 1012
Query: 981 DSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQ 1040
+F + +PII+ L + + + ++++ KH PR MIS L V+ +
Sbjct: 1013 FAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISSLIIVVSTNSRLE 1072
Query: 1041 AAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVST 1100
A + + +L G++ +++ + G+ +K V VR CL A++ IP++ + S +
Sbjct: 1073 AQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIYSPSFVWEDKYIG 1132
Query: 1101 SLWIAVHDPEKSVAEA-AEDIW--DRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATA 1157
SLW A D + A AE IW D+ K LS S +NV + A A
Sbjct: 1133 SLWFARFDNHDANTSALAEKIWLATNQPTQLPEDF---MKLLSDSTFNVNSETRKINALA 1189
Query: 1158 LDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD-VLRTKD 1212
+ E + I + LF +Y ++ R +A AL + ++ +
Sbjct: 1190 IKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALSGLGNAIVEPEV 1249
Query: 1213 LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
L + T +I R L D +V ++ G+ II++ G L FE +L + + +
Sbjct: 1250 LKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEAFLARPDNGTGE 1309
Query: 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332
D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S C++ L+ S +
Sbjct: 1310 EDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGISKCIAQLIPSFK 1369
Query: 1333 DEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
+ L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I TL+ + D+
Sbjct: 1370 KQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSILDTLQSYIEDKK 1429
Query: 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451
R+GAL AFECLC +GR+FEPY+I +LP LLV F D V VR+A A+A+MSQL
Sbjct: 1430 HPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDATADTAKAIMSQL 1489
Query: 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
S GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP IVPKLT VL DT
Sbjct: 1490 SGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTIVPKLTYVLNDT 1549
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
H KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ LL T +V+T+D
Sbjct: 1550 HTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENLLSTNYVHTIDP 1609
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L+P +K VL+DP
Sbjct: 1610 ASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNILMPVMKTVLLDP 1668
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
IPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQGLSEVLA+L
Sbjct: 1669 IPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQGLSEVLASLDI 1728
Query: 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
F ++ +++ + R VR+G L++F + P SLG F YL +VLP +L GLAD+++
Sbjct: 1729 SRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLPQVLKGLADDSD 1788
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L GDLLFK+AGT+
Sbjct: 1789 PVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFGDLLFKLAGTTA 1848
Query: 1812 KALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ + S DD+ + G I ++LG+++ +L++LYM+R D + SVRQ L
Sbjct: 1849 QEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFDNNSSVRQKVLL 1908
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926
+WK IV+NTPKTL+EI+P L+ +ISS+ S++ E+RQ++ + LG++V KL +R+LP I+P
Sbjct: 1909 IWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSKLSDRILPEILP 1968
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
IL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALCD +++VRE+A
Sbjct: 1969 ILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALCDPLIDVREAAA 2027
Query: 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHILPK 2043
AF L+ + G +A +EI+P L+ L++ D ALDGL+Q++ VR++ VLP ++PK
Sbjct: 2028 KAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVRSSIVLPVLIPK 2087
Query: 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVT 2102
L+ P+S N AL +LA AG GL HL TI+P+L+ + + + + KEAA ++
Sbjct: 2088 LLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNAKEIKEAAVSIC 2147
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP-NMISTLIVL 2161
IDE+G ++L+ L++ +IR + LIG FY + +V E P ++ +L+ L
Sbjct: 2148 KSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNT--MVTEYPEELLLSLLSL 2205
Query: 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221
+D D+ AA AL + S+ K+ +Y+ V + I ++ + IPGF
Sbjct: 2206 FNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEEVST----IPGF 2260
Query: 2222 CLPKALQPLLPIFL 2235
CLPK L +LP+ +
Sbjct: 2261 CLPKGLASVLPVLI 2274
|
Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating gcn2 kinase activity. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1571 (33%), Positives = 868/1571 (55%), Gaps = 110/1571 (7%)
Query: 711 EQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQG 770
++ AAI S+S ++ + P+++ F ++ S+S D++++ TPEG+L
Sbjct: 743 KETAAIASISMIVFVAPEESIPLFVNVFRNQLLHLNISSVSSTDLEIWKTPEGVLWDN-- 800
Query: 771 VYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKK 830
++ K++K+ + YE + V + SAK+ + K
Sbjct: 801 -----VLEKKSSKKLDKNTKDYETKRWEAEVRAKQSAKKPA------------------K 837
Query: 831 ADKGKTAKEEARELLLNEEASIREKVQ----GVQRNLSLMLSALGEMAIANPVFAHSQLP 886
K + A +A+ L+ EA IR +V ++R L ++ S LGE P
Sbjct: 838 LSKDQQALVDAQ---LDAEAKIRSRVNLIALSLERGLGIIRS-LGEAVQLAPALWVEDAI 893
Query: 887 SLVKFVDPLLQS-PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDL 945
++ F + L S P + ++AY+ + + + +++L I+ V+S
Sbjct: 894 DVLLFHNVLKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNSS- 952
Query: 946 IPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD 1005
++ E K+ I+ L + + F +FP++ + + + D+
Sbjct: 953 -ENIKELTKS---------ILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNSDEEDE 1002
Query: 1006 V-LQMLYKHMDPLLPLP-------RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN 1057
LQ+L + L R ++I L H+L + P+ ++L LC GL
Sbjct: 1003 AELQLLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHST 1062
Query: 1058 EVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ + + H +R A L A++ E +++ ++D ++
Sbjct: 1063 YTDEELNLLLSNLFHPESSIRSAVLQALQAFDL-------SRFEFIKEIFLELYDDNETN 1115
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTL 1172
A A I + G D T + L + + ++ ++L LDE+ + Q L
Sbjct: 1116 ASIAHQISTQNGLDATETSFFELQIFFTQDSDYLQQIIGKSLIDLLDEFEELGQFIPKEL 1175
Query: 1173 FSLY----------------IRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVI 1216
Y I+ +G D G + R+ +A++ + L + L
Sbjct: 1176 MRTYRENALPSAPEYDEYGIIKKETIGRD---LGRIARESVAVSFFHISKYLSSNLLLPF 1232
Query: 1217 MTFLISRALA-------DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ FL++ + A D + V +ML AG + I + G V L +FE LN +
Sbjct: 1233 LEFLLTASEAEAQIPVTDASQKVSSKMLEAGKLAIFQSGAHQVEALMELFEQKLNVDSLP 1292
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ D +RE V+ G +A+HL +DP++ V+D LL VL+TPSE+VQ AV+ CL PL++
Sbjct: 1293 TDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLSTPSESVQLAVAVCLPPLVK 1352
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
++ L ++LM S +++GAA+GLAG+VKG+GI + + + I +L E +++
Sbjct: 1353 KSLGKSKEYYELLSNKLMNSTSLADQKGAAYGLAGLVKGYGIKAFQDFNILDSLSELISN 1412
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
R +A R+ AL A E LG FEPY+ +LPLLL +F D VREA A + +MS
Sbjct: 1413 RQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVREATMDAVKQIMS 1472
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509
QLSA GVKL+LP+LL GL + WR+K++SV++LG M+Y AP+QLS LP I+PKL+EVLT
Sbjct: 1473 QLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLT 1532
Query: 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569
D+H +V++ +L + G VI NPEI +LVPTLL L+D +T +L+ LL+T+FV+ +
Sbjct: 1533 DSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYL 1592
Query: 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
D PSLAL++PI+ GLRER+A TK+++A+I G M SL TEP+++ Y+ L+P +++VL+
Sbjct: 1593 DPPSLALVIPILKYGLRERNAGTKRQSAKIFGLMASL-TEPENLAVYLESLMPRLREVLI 1651
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
DP+P+ R+ AA+A+GSLI +GE+ FP L+ L + L+S+ S V+R GAAQGLSE+LA L
Sbjct: 1652 DPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILAGL 1711
Query: 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749
G E +LP+I++N S +R+ +++L YLP + G +FQ YL + +P IL GLAD+
Sbjct: 1712 GLARLEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADD 1771
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
+E V+ A+L A ++V +YAT S+ LLLP +E G+F++ WRIR SSV+L+GDL+FK+AG
Sbjct: 1772 SELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFDNAWRIRLSSVQLVGDLVFKLAGI 1831
Query: 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869
+ KAL E ++EG ++ +A+++++G+++ + +L+ LY+VR D++ VR A+ +WK
Sbjct: 1832 NRKALQE-DEEEEGTHSDVSRKALLDIIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWK 1890
Query: 1870 TIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929
IV NTP+T++EI+P L + ++S+L SSS++RR + ++LG+L++K G VLP ++P+L
Sbjct: 1891 AIVVNTPRTVREILPTLTSIIVSNLNSSSNDRRTMCVKSLGDLLKKAGFDVLPQLLPVLK 1950
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
+GL+ ++ R GVCI L E++ SA QL + D+ + +R AL D LEVRE+A AF
Sbjct: 1951 QGLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAEAF 2010
Query: 1990 STLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049
+L G +A+D+++P LL LE + S+ AL L++I+S R++ + P ++P L+ P+
Sbjct: 2011 DSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPV 2070
Query: 2050 SAFNAHALGALAEVAGPGLNFHLGTILPAL----LSAMGDDDMDVQSLAKEAAETVTL-V 2104
SAFNA AL +LA+VAG LN L +IL AL L++ GDD + + A + V L V
Sbjct: 2071 SAFNARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNG----AIDKVNLSV 2126
Query: 2105 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164
D+EG++ L++ R +A + F++N KL + + I L D
Sbjct: 2127 KDQEGLQILMAHFYSFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLFED 2186
Query: 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224
V AA A + +V+++ K+ S + + ++ R + +P F +
Sbjct: 2187 KSQDVVVAAVAAQNTLVSALRKDQLDSLVSIAYHSL--------RDVGSQGVNLPAFEVA 2238
Query: 2225 KALQPLLPIFL 2235
+ + +LPIFL
Sbjct: 2239 QGVNSILPIFL 2249
|
Acts as a translation activator that mediates translational control by regulating gcn2 kinase activity. Translational activator of gcn4. May be involved in sensing charged tRNA and stimulating the kinase activity of gcn2 in amino acid-starved cells. Required for the phosphorylation of eIF-2-alpha by the protein kinase gcn2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/1255 (36%), Positives = 711/1255 (56%), Gaps = 61/1255 (4%)
Query: 1015 DPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELC--LGLQPNE--VASALHGVYTKD 1070
DP +PR+ ++ VL +L +PS N LC + + PN+ + L + + +
Sbjct: 991 DP--SIPRISIVEVLLSLL-SLPSKAKIAKDCFNALCQSISVAPNQEDLDMILSNLLSPN 1047
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
VR L + + L ++ S ++I D + S E A+ IW+ +
Sbjct: 1048 QFVRSTILETLD-----NEFELEPFMKYSPEVFICRFDSDPSNREIADFIWEFNKFVVND 1102
Query: 1131 DY-SGLFKALSHSNYNVRLAAAEALA----TALDEYPDSIQGSLSTLFSLY--------- 1176
+ LF + + +RL AA A A + +S + L+ L + Y
Sbjct: 1103 ELLKSLFPLFNQDDSGLRLFAANAYAFGAVSLFTSEENSSKDYLNDLLNFYKEKAKPLEP 1162
Query: 1177 -IRDIGL---GGDNVDAGWLGRQGIALALHSAADVLRTKDLPV--IMTFLISRA-LADTN 1229
+ GL W GR +A+ L A +D V I+ FL+ L D
Sbjct: 1163 ILDQFGLVLVSASEQKDPWQGRSTVAITLKIMAKAFSAEDDTVVNIIKFLVDDGGLVDRE 1222
Query: 1230 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289
VR M AG+ +I HG N L PIFE L+ ++E V+I G LA+
Sbjct: 1223 PIVRQEMKEAGVELITLHGSQNSKDLIPIFEEALSSSTDSA-----LKENVIILYGTLAR 1277
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQ 1345
HL + D ++H ++++LL L+TPS +Q+AVS+C++PL+ Q + D L+ +LL+
Sbjct: 1278 HLQQSDARIHTIIERLLSTLDTPSADIQQAVSACIAPLVFQFKQKVGDYLGILMEKLLNP 1337
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405
+ S R+GAA+G+AG+VKG+GIS+L ++ I L E D+ KRRE F+
Sbjct: 1338 TVASSM---RKGAAWGIAGLVKGYGISALSEFDIIRNLIEAAEDKKEPKRRESVGFCFQY 1394
Query: 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465
L E LG+ FEPYVI++LP +L D V VR+A A +A+M+ + GVK ++P +
Sbjct: 1395 LSESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAIMAHTTGYGVKKLIPVAVS 1454
Query: 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525
L++ AWRTK+ SVQLLG MAY P QLS L IVP++ VL D+H +V+ A +L++
Sbjct: 1455 NLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGVLNDSHKEVRKAADESLKR 1514
Query: 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585
G VI+NPEI LVP LL + DP +T+ +LD L+QT FV+ +D PSLAL++ I+HRG+
Sbjct: 1515 FGEVIRNPEIQKLVPVLLQAIGDPTKYTEEALDSLIQTQFVHYIDGPSLALIIHIIHRGM 1574
Query: 1586 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+RSA K+KA +IVGNM LV + KD+IPY+ L+ EV+ +VDP+P R+ AARA+G+
Sbjct: 1575 HDRSANIKRKACKIVGNMAILV-DTKDLIPYLQQLIDEVEIAMVDPVPNTRATAARALGA 1633
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
L+ +GEE FPDL+ LLD L ++ + +R G+AQ L+EV++ LG + +LP I+
Sbjct: 1634 LVERLGEEQFPDLIPRLLDTLSDESKSGDRLGSAQALAEVISGLGLTKLDEMLPTILAGV 1693
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
++ RA +R+G++ L +LP G QF Y+ Q++ IL GLAD +E++RD AL AG ++V
Sbjct: 1694 TNFRAYIREGFMPLLLFLPVCFGSQFAPYINQIIQPILSGLADNDENIRDTALKAGKLIV 1753
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
++YAT ++ LLLP +E G+F++N RIR SSV+L G+LLF+V G S + E +D +
Sbjct: 1754 KNYATKAVDLLLPELERGMFDENDRIRLSSVQLTGELLFQVTGISSRN--EFSEEDGDHN 1811
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
E G+ +++VLG+D+R+ +LAAL++ R+D S VR + +WK +V NTP+ +KEI+P
Sbjct: 1812 GEFSGK-LVDVLGQDRRDRILAALFVCRNDTSGIVRATTVDIWKALVPNTPRAVKEILPT 1870
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS-RRQGVC 1944
L +++ LASSS+ R +A + LG+LVR++G L ++P L L + S S RQGVC
Sbjct: 1871 LTGMIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPSLEESLIETSNSDSRQGVC 1930
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
I L E++ SA + F ++ IRTAL D VRE+A L+F G A+DE+
Sbjct: 1931 IALYELIESASTETISQFQSTIVNIIRTALIDESATVREAAALSFDVFQDVVGKTAVDEV 1990
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
+P LLH LE SD AL GL++I+S ++ + P ++P L+ P+ AF A ALG+LAEVA
Sbjct: 1991 LPYLLHMLESSDNSDFALLGLQEIMSKKSDVIFPILIPTLLAPPIDAFRASALGSLAEVA 2050
Query: 2065 GPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTL-VIDEEGVESLVSELLKGV 2121
G L L I+ AL+ A+ +D + + A + V L V D+EG+ L+ +++ +
Sbjct: 2051 GSALYKRLSIIINALVDAIIGTSEDESTKGALELALDRVFLSVNDDEGLHPLLQQIMSLL 2110
Query: 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
+ R + + F+ + L PN +S I+ L D D V + ALS ++
Sbjct: 2111 KSDNIEKRIAVLERLPNFFDKTVLDFDVYIPNFVSHAILSLDDEDQRVVNGNFNALSTLL 2170
Query: 2182 ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQ 2236
V K P+ K+++ A + R+ + + F LP+ +LPIFL
Sbjct: 2171 KKVDK---PTLEKLVKPAKQSLALTGRQGQD-----VAAFKLPRGPNCVLPIFLH 2217
|
Acts as a translation activator that mediates translational control by regulating GCN2 kinase activity. Translational activator of GCN4. May be involved in sensing charged tRNA and stimulating the kinase activity of GCN2 in amino acid-starved cells. Required in vivo for the phosphorylation of eIF-2-alpha on 'Ser-52' by the protein kinase GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 158/276 (57%), Gaps = 10/276 (3%)
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAV 1436
+ + + + L D+N A RE L E + + EPY++++LP ++ +D+ AV
Sbjct: 53 VFSAISKQLNDKN-ATARERVLKGLEAVANHGSVAADVEPYLVELLPAVIAKVADKQNAV 111
Query: 1437 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ 1495
R+AA A++A++ + VK ++PS+L+ + W K +S+QLL + AP QLS
Sbjct: 112 RDAAIAASKAIVRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSY 171
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
LP+I+P ++E + DT +V+ + + +V ++I N +I +P L+ + P +
Sbjct: 172 SLPQIIPVVSESMWDTKAEVKKQSKETMTKVCTLIANADIDRFIPELINCIAHP-EEVPE 230
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
++ L TTFV V AP+L+++VP++ RGL ERS K+K A I+ NM LV +P+ + P
Sbjct: 231 TIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSKLVEDPQVVAP 290
Query: 1616 YIGLLLP---EVKKVLVDPIPEVRSVAARAIGSLIR 1648
++ LLP +K + D PE RSV RAI +L R
Sbjct: 291 FLPKLLPGLYHIKDTIGD--PECRSVVQRAITTLER 324
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14134|ELF1_SCHPO mRNA export factor elf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 161/278 (57%), Gaps = 5/278 (1%)
Query: 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ 1432
+LK G L ++ S RE A++ F + + LG E + LP +L +FSD+
Sbjct: 50 TLKTTGFLDGLERAARNKKSGFHREAAMIGFATVIKNLGTPSEVVFLPYLPTILDSFSDR 109
Query: 1433 VVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKA--WRTKQSSVQLLGAMAYCA 1489
VR+AA+ AA+A++ L A V+ ++PSL+ L+D + W +K +++QLLG++A +
Sbjct: 110 GEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDDSSIKWPSKVAALQLLGSLASSS 169
Query: 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549
P+ ++ + ++P + E + DT P++ A T + + SV++N +I +P L+ + P
Sbjct: 170 PKAVADYMAALIPCIKERMHDTKPEISRAAITCMLNLCSVVENNDIIPHIPKLVDCMAHP 229
Query: 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ + + L TTFV TV++ +LA+LVPI+ R L +RS + I N+C LV +
Sbjct: 230 -ETLEACIKDLSATTFVATVESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288
Query: 1610 PKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSL 1646
P + ++ L+P+V+++ +PEVR++A+ A+ +L
Sbjct: 289 PAEASDFLPELIPDVERIAQTAAMPEVRALASHALTTL 326
|
Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P29551|EF3_PNECA Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAA 1440
TL E + +++ R E AL A + + EPY++++LP +L ++V AVR A
Sbjct: 53 TLEEQIESKDTLAR-EQALKALLLTLDATNKRVEPYLVRLLPRVLKQVGLEKVAAVRTQA 111
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499
A ++ ++ VK +L + ++ W K + +LL + AP Q+S LP+
Sbjct: 112 STVAEDIIKTMNPYAVKTILSHVTNSIKTSGKWMEKMCAFRLLDMLVEKAPCQMSYRLPE 171
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
++P L+E + DT +++ + + V ++I NP+I +P L+ + P + ++
Sbjct: 172 LIPILSESMWDTRTDIKNQARKTMTSVCTLISNPDIDKFIPVLIDCIAQP-EKVPETIHT 230
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L TTFV V A +L+++VP+++RGL ER K+K+A I+ NMC LV +P + P++
Sbjct: 231 LGATTFVQEVHASTLSIMVPLLYRGLNERETTIKRKSAVIIDNMCKLVEDPYIIAPFLPK 290
Query: 1620 LLP---EVKKVLVDPIPEVRSVAARAIGSLIR--GMGEENFPDLVS 1660
L+P +K+ + D PE RSV R++ +LIR + E P++++
Sbjct: 291 LIPTLEHIKETIGD--PECRSVVNRSLATLIRVGNVKEGKIPEVLN 334
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Pneumocystis carinii (taxid: 4754) |
| >sp|P25997|EF3_CANAL Elongation factor 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 17/326 (5%)
Query: 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRRE 1397
++S LL +L +D E A + F SS+ ++ + E L + +K +
Sbjct: 13 VLSELLSKLQVADNKDE-------AASNISTFLNSSIVEHDVPVEFFEDLKKQIQSKDAK 65
Query: 1398 GALLAFECL-----CEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452
+L A + L EPYV+ ++ + V D+ V+ AA A A+ S ++
Sbjct: 66 VSLAALDAYKHIASTNGLSPSVEPYVVDLVSEVAVKAGDKNKDVQTAASDALLAIASAIT 125
Query: 1453 AQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
VK +LP L+ L + W K + ++ + + A Q++ +P+++P L+E + DT
Sbjct: 126 PTAVKAILPKLIDNLTNTNKWTEKVAILRAVSQLVDTAKAQIALRMPELIPVLSESMWDT 185
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
+V+ A + + I N +I +P L+ + P + ++ +L TTFV+ V
Sbjct: 186 KKEVKEAATATMTKSTETIDNKDIEKFIPQLISCIAKPTE-VPETVHLLGATTFVSEVTM 244
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD- 1630
+L+++ P++ RGL ER K+KAA IV NMC LV +P+ + P++ LLP +K +
Sbjct: 245 ATLSIMAPLLSRGLAERDTAIKRKAAVIVDNMCKLVEDPQIVAPFMDKLLPGLKNNFANM 304
Query: 1631 PIPEVRSVAARAIGSLIR--GMGEEN 1654
PE R V RA+ +L R +GE +
Sbjct: 305 ADPEAREVTQRALNTLRRVGAVGEND 330
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|P53978|EF3B_YEAST Elongation factor 3B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 1473
EPY++ +P + + V+ AA A +A+ S ++ VK +LP L+ LE W+
Sbjct: 85 EPYIVATVPSVCSKAGSKDNDVQLAATKALKAIASAVNPVAVKALLPHLIHSLETSNKWK 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + ++++ + A +Q++ +P+++P L+E + DT V+ A T + + + N
Sbjct: 145 EKVAVLEVISVLVDAAKEQIALRMPELIPVLSESMWDTKKGVKEAATTTITKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P L+ + +PN+ ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPKLIECIANPNE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLAERETSIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+KAA I+ NMC LV +P+ + P++G LLP +K + D PE R V +A+ +L R
Sbjct: 264 RKAAVIIDNMCKLVEDPQVVAPFLGKLLPGLKNNFATIAD--PEAREVTLKALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Weakly expressed functional homolog of translation elongation factor 3A (YEF3), not required for survival. Can complement loss of YEF3 when expressed from the YEF3 or ADH1 promoters. Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWR 1473
EPY++Q++P + ++ ++ A ++++ ++ +K +LP L + E W+
Sbjct: 85 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 145 EKIAILAAISAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 264 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2256 | ||||||
| 296085156 | 2636 | unnamed protein product [Vitis vinifera] | 0.989 | 0.847 | 0.835 | 0.0 | |
| 359476554 | 2613 | PREDICTED: translational activator GCN1 | 0.983 | 0.848 | 0.833 | 0.0 | |
| 359476556 | 2461 | PREDICTED: translational activator GCN1 | 0.917 | 0.841 | 0.821 | 0.0 | |
| 356506010 | 2616 | PREDICTED: translational activator GCN1 | 0.983 | 0.848 | 0.787 | 0.0 | |
| 255562017 | 2459 | Translational activator GCN1, putative [ | 0.916 | 0.840 | 0.806 | 0.0 | |
| 449477742 | 2611 | PREDICTED: LOW QUALITY PROTEIN: translat | 0.985 | 0.851 | 0.776 | 0.0 | |
| 449470206 | 2611 | PREDICTED: translational activator GCN1- | 0.985 | 0.851 | 0.776 | 0.0 | |
| 357512395 | 2751 | Translational activator GCN1 [Medicago t | 0.989 | 0.811 | 0.740 | 0.0 | |
| 240254318 | 2610 | protein ILITYHIA [Arabidopsis thaliana] | 0.974 | 0.842 | 0.753 | 0.0 | |
| 334183637 | 2696 | protein ILITYHIA [Arabidopsis thaliana] | 0.957 | 0.800 | 0.737 | 0.0 |
| >gi|296085156|emb|CBI28651.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3829 bits (9929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1873/2242 (83%), Positives = 2047/2242 (91%), Gaps = 9/2242 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSN--------HSAKRESANREVSGAGKKDIGKSTKKADKGKTAK 838
GRFRMY++QD D V SN HS ++E+A+REV+G GKKDIGKSTKKADKGKTAK
Sbjct: 785 GRFRMYDDQDDGDDVNSNLSVKRETNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAK 844
Query: 839 EEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQS 898
EEARELLL EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+S
Sbjct: 845 EEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRS 904
Query: 899 PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KE 957
P+V +VAYE +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N +
Sbjct: 905 PVVSEVAYETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERP 964
Query: 958 SLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPL 1017
SL LFERI++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+
Sbjct: 965 SLGLFERIISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPI 1024
Query: 1018 LPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMAC 1077
LPLPRLRM+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMAC
Sbjct: 1025 LPLPRLRMLSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMAC 1084
Query: 1078 LNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFK 1137
LNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFK
Sbjct: 1085 LNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFK 1144
Query: 1138 ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197
ALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGI
Sbjct: 1145 ALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGI 1204
Query: 1198 ALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFP 1257
ALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFP
Sbjct: 1205 ALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFP 1264
Query: 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQ 1317
IFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQ
Sbjct: 1265 IFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQ 1324
Query: 1318 RAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 1377
RAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+
Sbjct: 1325 RAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKF 1384
Query: 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437
GIA LREGLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR
Sbjct: 1385 GIATVLREGLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVR 1444
Query: 1438 EAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497
+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL
Sbjct: 1445 DGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1504
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
PKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSL
Sbjct: 1505 PKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSL 1564
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
DILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI
Sbjct: 1565 DILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1624
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677
GLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSG
Sbjct: 1625 GLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSG 1684
Query: 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737
AAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQ
Sbjct: 1685 AAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQ 1744
Query: 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1797
VLPAILDGLADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE
Sbjct: 1745 VLPAILDGLADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1804
Query: 1798 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857
LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS
Sbjct: 1805 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVS 1864
Query: 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917
+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLG
Sbjct: 1865 ISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLG 1924
Query: 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
ERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS
Sbjct: 1925 ERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1984
Query: 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037
EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVL
Sbjct: 1985 TPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVL 2044
Query: 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
PHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+A
Sbjct: 2045 PHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKA 2104
Query: 2098 AETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST 2157
AETV LVIDEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+T
Sbjct: 2105 AETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITT 2164
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
LIVLLSDSDS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+L
Sbjct: 2165 LIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVL 2224
Query: 2218 IPGFCLPKALQPLLPIFLQVFV 2239
IPGFCLPKALQPLLP+FLQ +
Sbjct: 2225 IPGFCLPKALQPLLPVFLQGLI 2246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476554|ref|XP_002267871.2| PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3811 bits (9883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1862/2234 (83%), Positives = 2035/2234 (91%), Gaps = 16/2234 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
+NHS ++E+A+REV+G GKKDIGKSTKKADKGKTAKEEARELLL
Sbjct: 785 E---------------TNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAKEEARELLL 829
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+SP+V +VAY
Sbjct: 830 REEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRSPVVSEVAY 889
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLFERI 965
E +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N + SL LFERI
Sbjct: 890 ETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERPSLGLFERI 949
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+LPLPRLRM
Sbjct: 950 ISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPILPLPRLRM 1009
Query: 1026 ISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIP 1085
+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMACLNAVKCIP
Sbjct: 1010 LSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMACLNAVKCIP 1069
Query: 1086 AVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYN 1145
AVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFKALSH NYN
Sbjct: 1070 AVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFKALSHINYN 1129
Query: 1146 VRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205
VRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGIALALHSAA
Sbjct: 1130 VRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGIALALHSAA 1189
Query: 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK 1265
DVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFPIFENYLNK
Sbjct: 1190 DVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFPIFENYLNK 1249
Query: 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 1325
K SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLS
Sbjct: 1250 KTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLS 1309
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
PLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+GIA LRE
Sbjct: 1310 PLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKFGIATVLRE 1369
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
GLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR+ AECAAR
Sbjct: 1370 GLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVRDGAECAAR 1429
Query: 1446 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT
Sbjct: 1430 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1489
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
EVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQTTF
Sbjct: 1490 EVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQTTF 1549
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
VN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK
Sbjct: 1550 VNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1609
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
KVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSGAAQGLSEV
Sbjct: 1610 KVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSGAAQGLSEV 1669
Query: 1686 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQVLPAILDG
Sbjct: 1670 LAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQVLPAILDG 1729
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK
Sbjct: 1730 LADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1789
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
VAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS+SVRQAAL
Sbjct: 1790 VAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVSISVRQAAL 1849
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSII 1925
HVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLGERVLP II
Sbjct: 1850 HVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLGERVLPLII 1909
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS EVRESA
Sbjct: 1910 PILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSTPEVRESA 1969
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
GLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV
Sbjct: 1970 GLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2029
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105
HLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+AAETV LVI
Sbjct: 2030 HLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKAAETVVLVI 2089
Query: 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165
DEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDS
Sbjct: 2090 DEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITTLIVLLSDS 2149
Query: 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 2225
DS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+LIPGFCLPK
Sbjct: 2150 DSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVLIPGFCLPK 2209
Query: 2226 ALQPLLPIFLQVFV 2239
ALQPLLP+FLQ +
Sbjct: 2210 ALQPLLPVFLQGLI 2223
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476556|ref|XP_003631859.1| PREDICTED: translational activator GCN1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3582 bits (9288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1762/2146 (82%), Positives = 1916/2146 (89%), Gaps = 76/2146 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+VSKNA CRVA QAS+LHIVMQ SFR RR
Sbjct: 1 MEKQSKFQSNIGCYRLLKWSCLLLSKSRFASVSKNAFCRVATVQASVLHIVMQGSFRVRR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+TFF LFSQS DIYK Y +ELKDARI YK SPELI LLLEF S+ P LFE+C+PIFL
Sbjct: 61 ACKRTFFCLFSQSLDIYKIYIEELKDARISYKDSPELIWLLLEFSSRKPLLFEQCKPIFL 120
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
DIYVKAVLNA+E+P KGLSE+F PLFTHM EDF+SIV+P++IKMLKRNPEI+LES+G+L
Sbjct: 121 DIYVKAVLNAREEPAKGLSEAFHPLFTHMVHEDFKSIVVPSAIKMLKRNPEIVLESVGVL 180
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LKSVNLDLSKYA EILSVVL+Q RHADEGR+ GAL+I+ CLS+KSSNPDA+EAMF +IKA
Sbjct: 181 LKSVNLDLSKYAIEILSVVLAQARHADEGRRHGALSIVCCLSQKSSNPDAIEAMFNSIKA 240
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRLAFPYQR+GM+NALQELSNA EGKYLNSLS TIC FLLSCYKD+GNEEVKLA
Sbjct: 241 VIGGSEGRLAFPYQRVGMINALQELSNAPEGKYLNSLSPTICGFLLSCYKDDGNEEVKLA 300
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
IL A+ASW RSAD +Q D++SF SGLKEKE LRRGHLRCLR I NTDA++ VSSLLG
Sbjct: 301 ILPALASWVARSADALQRDVVSFLVSGLKEKEGLRRGHLRCLRFIFKNTDAIILVSSLLG 360
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PL+QLVKTGFTKA QRLDGIYA L+V KIAA DIKAEETV KEKLWSL+SQNEPSLVP +
Sbjct: 361 PLVQLVKTGFTKAAQRLDGIYALLLVAKIAAVDIKAEETVAKEKLWSLISQNEPSLVPIS 420
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +DCMACV+LL VL+VEH HRVLETFS +L+QL+L CHPSWDIR+ A+D T
Sbjct: 421 MASKLSTEDCMACVDLLEVLIVEHLHRVLETFSKNVLVQLILFLVCHPSWDIRRAAYDNT 480
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
+KII++ P L+EALL EF+NFLS+VGEKI + KTSDT++ +D+QVPFLPSVEV VK L+V
Sbjct: 481 KKIISAAPKLAEALLSEFTNFLSVVGEKIQLLKTSDTENSLDAQVPFLPSVEVLVKALIV 540
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S ALA PSA ++IFCSHHP IVGTGKR+AVW
Sbjct: 541 ISSEALAAVPSAIMQIIFCSHHPCIVGTGKRNAVW------------------------- 575
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
+ LLG LMS N LEQ+AAINSLSTLMS+ PKDTY+ FEKH + PD HD++SEND
Sbjct: 576 -RGLLGPTALMSPNHLEQEAAINSLSTLMSVIPKDTYIEFEKHFSNFPDRQSHDTVSEND 634
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
IQ+F+TPEGMLSSEQGVY+AE VA KN +Q+KGRFR + +NHS ++E+A+R
Sbjct: 635 IQIFHTPEGMLSSEQGVYVAESVATKNMRQAKGRFR----------IETNHSGRKETASR 684
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
EV+G GKKDIGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMA
Sbjct: 685 EVTGVGKKDIGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMA 744
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
IANPVFAHS+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLI
Sbjct: 745 IANPVFAHSELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLI 804
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VTEEVHV +LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFP
Sbjct: 805 VTEEVHVLLELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFP----- 859
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
VLYH LGVVP+YQA+IG ALNELCLG
Sbjct: 860 ----------------------------------VLYHALGVVPTYQASIGPALNELCLG 885
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
LQ +EVA AL+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSV
Sbjct: 886 LQSDEVAPALYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSV 945
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AE AEDIWDR GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLF
Sbjct: 946 AELAEDIWDRCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLF 1005
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD+G G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1006 SLYIRDVGFGEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1065
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGI+IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1066 GRMINAGILIIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAK 1125
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYG
Sbjct: 1126 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYG 1185
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRL
Sbjct: 1186 ERRGAAFGLAGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRL 1245
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1246 FEPYVIQMLPLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1305
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNP
Sbjct: 1306 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNP 1365
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI++LVPTLLMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1366 EISALVPTLLMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETK 1425
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEE
Sbjct: 1426 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEE 1485
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLVSWLLD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVR
Sbjct: 1486 NFPDLVSWLLDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVR 1545
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFKYLPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSL
Sbjct: 1546 DGYLTLFKYLPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSL 1605
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI
Sbjct: 1606 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1665
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IE LGRDKRNEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+S
Sbjct: 1666 IEGLGRDKRNEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITS 1725
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMAS
Sbjct: 1726 LASSSSERRQVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMAS 1785
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLLSFMDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LE
Sbjct: 1786 AGKSQLLSFMDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLE 1845
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG
Sbjct: 1846 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLG 1905
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
+LPALLSAM DDD DVQ LAK+AAETV LVIDEEGVE L+SELLKGVGDNQASIRRSS+
Sbjct: 1906 IVLPALLSAMSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSS 1965
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
+LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDSDS TVA AWEALSRV SVPKEV PSYI
Sbjct: 1966 FLIGYFFKNSKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYI 2025
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFV 2239
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPLLP+FLQ +
Sbjct: 2026 KIVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLI 2071
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506010|ref|XP_003521781.1| PREDICTED: translational activator GCN1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3512 bits (9107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1761/2235 (78%), Positives = 1986/2235 (88%), Gaps = 16/2235 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT--EMSPEIASFLVDIIFKTFSVY 61
A+S +L+S++ VSTSST R RIFR ++ + + ++ EMS E+AS L DIIF+T ++Y
Sbjct: 3 AESLQSLVSLSELVSTSSTNHRVRIFRREIPAFLNSSTSEMSTELASLLTDIIFRTVAIY 62
Query: 62 DDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKS 121
DD SRKAVDDVI K LG FMKTFA ALVQ MEKQSKFQSHVG YRLL WSCLLLSKS
Sbjct: 63 DDLRSRKAVDDVIVKALGGTVFMKTFAGALVQNMEKQSKFQSHVGGYRLLSWSCLLLSKS 122
Query: 122 QFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDA 181
+FA VSKNALCRVAAAQASLL +V++RSFRERRAC++ FFHLFSQ PDIYK Y +EL++
Sbjct: 123 KFAAVSKNALCRVAAAQASLLSLVLKRSFRERRACRKKFFHLFSQLPDIYKVYMEELRNG 182
Query: 182 RIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFT 241
RIP+K SPEL+ LLLEF S+SPSLF + + FLDIYV A+L+AKEKP K L+E+F PL+
Sbjct: 183 RIPFKDSPELLMLLLEFSSRSPSLFGEFKVTFLDIYVNAILSAKEKPGKSLTEAFHPLYL 242
Query: 242 HMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHAD 301
MS EDFQSIV+P+S+KMLKRNPEI+LES+GILLKSVNLDLSKYA EILSVVL+Q RHAD
Sbjct: 243 QMSHEDFQSIVIPSSVKMLKRNPEIVLESVGILLKSVNLDLSKYAAEILSVVLAQARHAD 302
Query: 302 EGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSN 361
EGR+ GAL I+ LS+KSSNPDAL+ MF AIKAVI GSEGRLAFPYQR+GMVNA+QELS
Sbjct: 303 EGRRDGALAIVQSLSQKSSNPDALDTMFNAIKAVIKGSEGRLAFPYQRVGMVNAIQELSY 362
Query: 362 ATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASG 421
A +GKYL SLS TIC FLLS YKD+GNEEVK+ ILSA+ASWA RS DIIQ L+SF ASG
Sbjct: 363 APDGKYLISLSRTICDFLLSYYKDDGNEEVKIVILSAIASWAVRSTDIIQESLVSFLASG 422
Query: 422 LKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVG 481
LKEKE LR+G LR L IC N DAVL++ L+G L+QLVKTGFTKAVQRLDGIYA L+V
Sbjct: 423 LKEKETLRKGFLRSLHAICKNEDAVLKMLPLIGTLMQLVKTGFTKAVQRLDGIYALLLVA 482
Query: 482 KIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHR 541
KIAA DIKAEET+ KEK+W+L+SQNEPS+VP +M SKLS++D M CV+LL VLLVEH
Sbjct: 483 KIAAVDIKAEETLVKEKIWALISQNEPSVVPISMASKLSIEDNMTCVDLLEVLLVEHLQC 542
Query: 542 VLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGE 601
L FSV+L+LQL++ F CHP WDIR+MA+D RKII S P LS+ LLLEFS +L+L+GE
Sbjct: 543 TLSNFSVRLMLQLMIFFMCHPRWDIRRMAYDVARKIIPSAPQLSKDLLLEFSKYLTLIGE 602
Query: 602 KIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVG 661
K + KTSD+D +D QVPF+PSVEV VK LL+++ AL P + R+I CSHHP +VG
Sbjct: 603 KHLALKTSDSDISLDPQVPFIPSVEVLVKALLIMSPAALKHAPESFFRIILCSHHPCVVG 662
Query: 662 TGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLST 721
K DAVW+RL KCL+ GF VI+++SA+VGN +VLLG +GL SAN LEQQAAI SL
Sbjct: 663 GAKIDAVWKRLSKCLQTQGFVVIDVISANVGNFLQVLLGPMGLKSANPLEQQAAILSLCN 722
Query: 722 LMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
LMSI P DTY+ FEK+L +LP+ + HD+L ENDIQ+F TPEGMLS+EQGVY+AE V AKN
Sbjct: 723 LMSIIPGDTYIEFEKNLLNLPERFAHDTLLENDIQIFLTPEGMLSTEQGVYVAESVTAKN 782
Query: 782 TKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA 841
TKQ DH SNHS +R+ +RE +GAGKKD GK+ KKADKGKTAKEEA
Sbjct: 783 TKQ--------------DHTRSNHSVRRDQPSREAAGAGKKDTGKAAKKADKGKTAKEEA 828
Query: 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIV 901
RELLL EEAS+R++V+ +Q+NLSLML LG+MAIAN VFAHS+LPS+VKFV+PL++SPIV
Sbjct: 829 RELLLKEEASVRDRVREIQKNLSLMLRTLGDMAIANSVFAHSRLPSMVKFVEPLMRSPIV 888
Query: 902 GDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCL 961
D A+E +VKL+RCTA PLC+WALDI+TALRLIVT+EVH+ DL+PSV E N+ L
Sbjct: 889 SDEAFETMVKLARCTAPPLCDWALDISTALRLIVTDEVHLLLDLVPSVTEEEFNERPHGL 948
Query: 962 FERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLP 1021
FERI++GL++SCKSG LPVDSF+F+FPIIERILL K+T HDDVL++ Y H+DP LPLP
Sbjct: 949 FERILDGLSISCKSGALPVDSFSFIFPIIERILLCSKKTKFHDDVLRIFYLHLDPHLPLP 1008
Query: 1022 RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAV 1081
R+RM+SVLYHVLGVVP+YQA+IG ALNEL LGLQP EVASAL+GVY KDVHVRMACLNAV
Sbjct: 1009 RIRMLSVLYHVLGVVPAYQASIGPALNELSLGLQPAEVASALYGVYAKDVHVRMACLNAV 1068
Query: 1082 KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSH 1141
KCIPAV+ RSLPEN+EV+TS+WIA+HDPEKSVA+ AEDIWD YG+DFGTD+SGL+KALSH
Sbjct: 1069 KCIPAVANRSLPENVEVATSIWIALHDPEKSVAQVAEDIWDHYGFDFGTDFSGLYKALSH 1128
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
NYNVR+AAAEALA ALDE+PDSIQ SLSTLFSLYI D+G+G DNVDAGWLGRQGIALAL
Sbjct: 1129 INYNVRVAAAEALAAALDEHPDSIQESLSTLFSLYILDMGVGDDNVDAGWLGRQGIALAL 1188
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
H+AAD+LRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDK+G+DNVSLLFPIFEN
Sbjct: 1189 HAAADILRTKDLPVVMTFLISRALADLNADVRGRMINAGILIIDKNGKDNVSLLFPIFEN 1248
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
YLNK A DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS
Sbjct: 1249 YLNKTAPDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1308
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+CLSPLMQS QD+A L +RL+DQ+MKS+KYGERRGAAFGLAG+VKGFGIS LKKY I
Sbjct: 1309 ACLSPLMQSKQDDAAALFNRLMDQMMKSEKYGERRGAAFGLAGLVKGFGISCLKKYRIVI 1368
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAE 1441
TL+E LA+RNSAK REGALL FECLCE LGR+FEPYVIQMLPLLLV+FSDQV AVREAAE
Sbjct: 1369 TLQESLAERNSAKSREGALLGFECLCETLGRIFEPYVIQMLPLLLVSFSDQVNAVREAAE 1428
Query: 1442 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV
Sbjct: 1429 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1488
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
PKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLL GL+DPN+HTKYSLDILL
Sbjct: 1489 PKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLKGLSDPNEHTKYSLDILL 1548
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
QTTFVN++DAPSLALLVPIVHRGLRERSA+TKK+AAQIVGNMCSLVTEPKDMIPYIGLLL
Sbjct: 1549 QTTFVNSIDAPSLALLVPIVHRGLRERSADTKKRAAQIVGNMCSLVTEPKDMIPYIGLLL 1608
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
PEVKKVLVDPIPEVRSVAARAIGSLI GMGEENFPDLV WL D LKSDNSNVERSGAAQG
Sbjct: 1609 PEVKKVLVDPIPEVRSVAARAIGSLIGGMGEENFPDLVPWLFDTLKSDNSNVERSGAAQG 1668
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
LSEVLAALG +FEH+LPDIIR+CSHQ+ASVRDGYLTLFKYLPRSLGVQFQNYL QVLPA
Sbjct: 1669 LSEVLAALGIDFFEHVLPDIIRHCSHQKASVRDGYLTLFKYLPRSLGVQFQNYLPQVLPA 1728
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND+WRIRQSSVELLGD
Sbjct: 1729 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDSWRIRQSSVELLGD 1788
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
LLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIE+LGRDKRNEVLAALYMVR+DVSLSVR
Sbjct: 1789 LLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEILGRDKRNEVLAALYMVRADVSLSVR 1848
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
QAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLASSSSERRQVAGR+LGELVRKLGERVL
Sbjct: 1849 QAALHVWKTIVANTPKTLREIMPVLMDTLITSLASSSSERRQVAGRSLGELVRKLGERVL 1908
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
P IIPILS+GL DP++SRRQGVC+GLSEVMASAGKSQLL+FM+ELIPTIRTALCDS+ EV
Sbjct: 1909 PLIIPILSQGLNDPNSSRRQGVCVGLSEVMASAGKSQLLTFMNELIPTIRTALCDSVSEV 1968
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
RESAGLAFSTL+KSAGM AIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPHIL
Sbjct: 1969 RESAGLAFSTLYKSAGMLAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTSAVLPHIL 2028
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 2101
PKLVH PLSAFNAHALGALAEVAGPGL+FHL T+LP LLSAMGDDD +VQ+LAKEA+ETV
Sbjct: 2029 PKLVHPPLSAFNAHALGALAEVAGPGLDFHLCTVLPPLLSAMGDDDKEVQTLAKEASETV 2088
Query: 2102 TLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161
LVIDEEG+E L+SEL+KGV D+QA++RRSS+YLIGYF+KNSKLYLVDEAPNMISTLI+L
Sbjct: 2089 VLVIDEEGIEPLMSELVKGVNDSQAAVRRSSSYLIGYFFKNSKLYLVDEAPNMISTLIIL 2148
Query: 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221
LSDSDS+TV AWEALSRV+ SVPKEV PSYIK++RDA+STSRDKERRKKKGGPILIPGF
Sbjct: 2149 LSDSDSSTVTVAWEALSRVIISVPKEVLPSYIKLVRDAVSTSRDKERRKKKGGPILIPGF 2208
Query: 2222 CLPKALQPLLPIFLQ 2236
CLPKALQP+LPIFLQ
Sbjct: 2209 CLPKALQPILPIFLQ 2223
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562017|ref|XP_002522017.1| Translational activator GCN1, putative [Ricinus communis] gi|223538821|gb|EEF40421.1| Translational activator GCN1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3475 bits (9010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1730/2146 (80%), Positives = 1892/2146 (88%), Gaps = 78/2146 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKF SHVGCYRLL WSCLLL +SQFA VSKNA+CRVAAAQAS L V+ RSFRERR
Sbjct: 1 MEKQSKFHSHVGCYRLLNWSCLLLCQSQFAAVSKNAVCRVAAAQASTLSTVIHRSFRERR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+ FFHLFSQSP IYK YT+E KDARIPYK SPEL+ LLLEF S + S FE+ +P+FL
Sbjct: 61 ACKRLFFHLFSQSPHIYKIYTEEFKDARIPYKDSPELMWLLLEF-SIASSSFEQVKPVFL 119
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
D YVKA+LNAKEKP LSESF PLF H+S EDFQ++V+P++ KMLKRNPEI+LES+GIL
Sbjct: 120 DTYVKAILNAKEKPATRLSESFQPLFMHLSHEDFQNVVVPSAAKMLKRNPEIVLESVGIL 179
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LK V LDLSKYA+EILSVVL Q RH DE R+ AL I+ CLS+KSSNPDALEAMF A+KA
Sbjct: 180 LKFVKLDLSKYASEILSVVLPQARHTDESRRLTALAIVRCLSQKSSNPDALEAMFTAVKA 239
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRL FPYQR+GM NALQELS A EGKYL+ LS TIC FLLSCYK+EGNEEVKLA
Sbjct: 240 VIGGSEGRLQFPYQRVGMFNALQELSYAPEGKYLSGLSCTICSFLLSCYKNEGNEEVKLA 299
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
+LSA+ASWA RSAD +Q D++SF ASGLKEKE LRRGHLRCLRVIC N DA+LQ+SSLLG
Sbjct: 300 VLSAIASWAARSADAVQPDIVSFIASGLKEKEVLRRGHLRCLRVICKNNDAILQISSLLG 359
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PLIQLVKTGFTKAVQRLDG+YA LI GKIA+ADIKAEET+ KEK+WSL++QNEPSLV +
Sbjct: 360 PLIQLVKTGFTKAVQRLDGVYALLIAGKIASADIKAEETLAKEKIWSLIAQNEPSLVQIS 419
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +D MACV+LL VLL+EHS R+LE FSV+LLLQL++ CHP+W++RKM+HD+T
Sbjct: 420 MASKLSPEDSMACVDLLEVLLIEHSRRMLEAFSVRLLLQLIVFLLCHPNWEVRKMSHDST 479
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
R+IITSVP LSE L+ EF+NFLS V EK+ TSDTD +D QVPFLPSVEV VK L+V
Sbjct: 480 RRIITSVPQLSEVLITEFTNFLSSVAEKVFSLNTSDTDTSLDPQVPFLPSVEVLVKALIV 539
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S LA PS S +++FCSHHP I+GT +DAVW
Sbjct: 540 ISSATLATSPSISTKILFCSHHPCIIGTANKDAVW------------------------- 574
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
K LLG +GLMS N+ EQQAAINSLSTLMSITP DTY+ FEKHL +L D Y HD LSEND
Sbjct: 575 -KGLLGPMGLMSLNVFEQQAAINSLSTLMSITPSDTYMEFEKHLNNLEDRYSHDMLSEND 633
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
I++F+TPEGMLSSEQGVY+AE +A+KNT+Q+KGRFR+ SNHSAKRE R
Sbjct: 634 IRIFHTPEGMLSSEQGVYVAESIASKNTRQAKGRFRI-----------SNHSAKREPTGR 682
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
E +G G+KD GK KK DKGKTAKEEARELLL EE SIREKVQ VQ NLSL+L ALGEMA
Sbjct: 683 EATGVGRKDAGKLAKKTDKGKTAKEEARELLLKEEESIREKVQDVQNNLSLILRALGEMA 742
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++NPVFAHSQLPSLV+FVD LL+SPIV DVA+E LVKL+RCTA PLCNWALDIATAL LI
Sbjct: 743 VSNPVFAHSQLPSLVRFVDSLLRSPIVSDVAFETLVKLARCTAPPLCNWALDIATALCLI 802
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
T EV V +LIP+VG+ N + SL LFERI+ GL+VSCKSGPLPVDSFTFVFP
Sbjct: 803 ATAEVSVLPNLIPTVGKGETNERPSLGLFERIIAGLSVSCKSGPLPVDSFTFVFP----- 857
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
LYHVLGVVP+YQA++G+ALNELCLG
Sbjct: 858 ----------------------------------ALYHVLGVVPAYQASVGAALNELCLG 883
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ +EVASAL+GVY KDVHVRMACLNA+KCIPAVS+RSLP+N+E++TS+WIA+HDPEK +
Sbjct: 884 LKADEVASALYGVYAKDVHVRMACLNAIKCIPAVSSRSLPQNVEIATSIWIALHDPEKLI 943
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AEAAEDIWDRYG DFGTDYSGLFKALSH NYNVR+A AEALA ALDE PDSIQ SLSTLF
Sbjct: 944 AEAAEDIWDRYGCDFGTDYSGLFKALSHINYNVRIATAEALAAALDENPDSIQESLSTLF 1003
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD G DNVDAGW+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1004 SLYIRDATFGEDNVDAGWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1063
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGIMIIDKHG++NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1064 GRMINAGIMIIDKHGKENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1123
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A +LVSR+LDQLMKSDKYG
Sbjct: 1124 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDAASLVSRVLDQLMKSDKYG 1183
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAG+VKGFGISSLK YGI A LREGL DRNSAK REGALLAFECLCEKLG+L
Sbjct: 1184 ERRGAAFGLAGIVKGFGISSLKNYGIIAALREGLVDRNSAKSREGALLAFECLCEKLGKL 1243
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1244 FEPYVIQMLPLLLVSFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1303
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAP+QLSQCLP IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP
Sbjct: 1304 TKQSSVQLLGAMAYCAPRQLSQCLPTIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1363
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI+SLVPTLLM LTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1364 EISSLVPTLLMALTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETK 1423
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE
Sbjct: 1424 KKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1483
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLV WL D LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPD+IRNCSHQRASVR
Sbjct: 1484 NFPDLVPWLFDTLKSDTSNVERSGAAQGLSEVLAALGTKYFEHVLPDLIRNCSHQRASVR 1543
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFK+LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL
Sbjct: 1544 DGYLTLFKFLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1603
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK+LLEGGSDDEGASTEAHGRAI
Sbjct: 1604 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKSLLEGGSDDEGASTEAHGRAI 1663
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IEVLGR+KRNEVLAALYMVR+D+SLSVRQAALHVWKTIVANTPKTLKEIMP+LMNTLISS
Sbjct: 1664 IEVLGREKRNEVLAALYMVRTDMSLSVRQAALHVWKTIVANTPKTLKEIMPILMNTLISS 1723
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGRALGELVRKLGERVLP IIPILS+GL++P ASRRQGVCIGLSEVMAS
Sbjct: 1724 LASSSSERRQVAGRALGELVRKLGERVLPLIIPILSQGLRNPDASRRQGVCIGLSEVMAS 1783
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLL+FMDELIPTIRTALCDS+LEVRESAGLAFSTL+KSAGMQAIDEIVPTLLHALE
Sbjct: 1784 AGKSQLLNFMDELIPTIRTALCDSMLEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALE 1843
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DD+TSDTALDGLKQILSVRT AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN HL
Sbjct: 1844 DDETSDTALDGLKQILSVRTAAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNVHLS 1903
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
T+LPALLSAMG +D DVQ+LAKEAAETV LVIDEEGVE L++ELLKGVGD+ AS+RRSS+
Sbjct: 1904 TVLPALLSAMGGEDKDVQTLAKEAAETVVLVIDEEGVEYLIAELLKGVGDSMASVRRSSS 1963
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
YLIGYF+KNSKLYL DEAPNMISTLIVLLSD DS TVA AWEALSRVV+SVPKEV PSY+
Sbjct: 1964 YLIGYFFKNSKLYLADEAPNMISTLIVLLSDMDSATVAIAWEALSRVVSSVPKEVLPSYL 2023
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFV 2239
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPL+PIFLQ +
Sbjct: 2024 KLVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLVPIFLQGLI 2069
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477742|ref|XP_004155110.1| PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3474 bits (9007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1736/2237 (77%), Positives = 1954/2237 (87%), Gaps = 14/2237 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIFR+ + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFRNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS KYGERRG AFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSXKYGERRGVAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKK AQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKXAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQATIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQVFV 2239
LPKALQPLLPIFLQ +
Sbjct: 2209 LPKALQPLLPIFLQGLI 2225
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470206|ref|XP_004152809.1| PREDICTED: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3472 bits (9002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1736/2237 (77%), Positives = 1955/2237 (87%), Gaps = 14/2237 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIF + + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFLNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS+KYGER GAAFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSEKYGERCGAAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKKAAQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKAAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQAAIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQVFV 2239
LPKALQPLLPIFLQ +
Sbjct: 2209 LPKALQPLLPIFLQGLI 2225
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512395|ref|XP_003626486.1| Translational activator GCN1 [Medicago truncatula] gi|355501501|gb|AES82704.1| Translational activator GCN1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3397 bits (8807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1746/2357 (74%), Positives = 1979/2357 (83%), Gaps = 124/2357 (5%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT----EMSPEIASFLVDIIFKTFS 59
A+S +L+S++ VSTSST +R RIF+ +V + + ++ EMS E+AS L DIIF+T +
Sbjct: 2 AESLQSLVSLSELVSTSSTNQRLRIFQREVPAFLNSSSTSDEMSTELASLLTDIIFRTVA 61
Query: 60 VYDDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLS 119
+YDDR SRKAVDDVI K L FMKTFAAALVQ+MEKQ K QSHVGCYRLL WSCLLLS
Sbjct: 62 IYDDRRSRKAVDDVIVKSLSGTVFMKTFAAALVQSMEKQLKSQSHVGCYRLLSWSCLLLS 121
Query: 120 KSQFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELK 179
KS+F+TVSKNALCRVA+ QASLL++V +RSFRERRACK+ FHLF + PDIYK Y E+K
Sbjct: 122 KSKFSTVSKNALCRVASGQASLLNLVWRRSFRERRACKKKIFHLFKELPDIYKVYVQEVK 181
Query: 180 DARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPL 239
+ IPYK SPEL+ LLLEF ++S SLF + + FLDIYV A+L+AK KP K L E+F PL
Sbjct: 182 NGSIPYKDSPELLLLLLEFSTRSSSLFGEFKSAFLDIYVNAILSAKAKPGKSLIEAFHPL 241
Query: 240 FTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRH 299
+ MS EDF +IVLPA++KMLKRNPEI+LES+GILLKSV LDLSKYA EILSVVL Q RH
Sbjct: 242 YLQMSHEDFGTIVLPAAVKMLKRNPEIVLESVGILLKSVKLDLSKYAAEILSVVLVQARH 301
Query: 300 ADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQEL 359
ADEGR+ AL I+ LS+KSSNPDAL+ MF AIK+VI GSEGRLAFPYQR+GMVNA+QEL
Sbjct: 302 ADEGRRDVALDIVKNLSQKSSNPDALDIMFNAIKSVIKGSEGRLAFPYQRVGMVNAIQEL 361
Query: 360 SNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFA 419
SNA +GKYL +LS TIC FLLSCYKD+GNEEVK+A LSA+ASWA +S +IIQ L+SFFA
Sbjct: 362 SNAPDGKYLINLSQTICDFLLSCYKDDGNEEVKIATLSAIASWADKSTNIIQESLVSFFA 421
Query: 420 SGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLI 479
SGLKEKE LRRG LR LR IC N DAVL++S LL PL+QLVKTGFTKAVQRLDGIYA L+
Sbjct: 422 SGLKEKEILRRGFLRSLRAICKNADAVLKMSPLLVPLVQLVKTGFTKAVQRLDGIYALLL 481
Query: 480 VGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHS 539
VGKIAA DIKAEE + KEK+W+ +SQNEPSL+P +M SKL+V+D +AC++LL VLL+EH
Sbjct: 482 VGKIAAVDIKAEEILVKEKIWATISQNEPSLIPISMASKLAVEDSIACIDLLEVLLLEHL 541
Query: 540 HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLV 599
R L FSV LLQLV+ F CHP WDIR++A + ++IITSVP LSE +L EFS +L+LV
Sbjct: 542 QRTLSNFSVTSLLQLVIFFICHPRWDIRRIACNVAKRIITSVPQLSEDILSEFSKYLNLV 601
Query: 600 GEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSI 659
EK+ + SDTD +D QVPF+PSVEV VK LL+++ A+ P + R+I CSHHP +
Sbjct: 602 EEKVSALRISDTDISLDPQVPFIPSVEVLVKALLIMSPAAMKVAPDSFVRIILCSHHPCV 661
Query: 660 VGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSL 719
VG+ KRDAVW+RL KCL+ GF+VI+IV+A+V N +VLLG +GL SAN LEQ+AAI+SL
Sbjct: 662 VGSAKRDAVWKRLCKCLQTHGFDVIDIVAANVINFVQVLLGPMGLRSANPLEQEAAISSL 721
Query: 720 STLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAA 779
S LMSI P DTY FEKHL +LP+ + H++LSENDIQ+F+TPEGMLS+EQG+Y+AE VA
Sbjct: 722 SNLMSIIPGDTYTEFEKHLLNLPERFSHNALSENDIQIFHTPEGMLSTEQGIYVAESVAF 781
Query: 780 KNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKA-------D 832
KNTKQ+KGRFRMY E+DG+DH SNHS KR+ +RE +GAGKKD GK+TKKA D
Sbjct: 782 KNTKQAKGRFRMYGEEDGLDHTQSNHSMKRDQPSREAAGAGKKDSGKTTKKAGKFSTSID 841
Query: 833 KGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSL---- 888
KGKTAKEEARE LL EEASIR++V+ +Q+NLSLML LG MAIAN +FAHS+LPS+
Sbjct: 842 KGKTAKEEARESLLKEEASIRDRVREIQKNLSLMLRTLGNMAIANSIFAHSRLPSMVLEC 901
Query: 889 --------------VKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
VKFV+PLL+SPIV D A+E LV LSRCTA PLC+WALDI+TALRL+
Sbjct: 902 FLLIFVDLLPYICDVKFVEPLLRSPIVSDEAFETLVMLSRCTASPLCDWALDISTALRLV 961
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VT+EVH+ DL+PSV E N K S LFERI++GL+ SCKSG LPVDSFTFVFPI+ERI
Sbjct: 962 VTDEVHLLLDLVPSVAEEQVNQKPSHGLFERIIDGLSTSCKSGALPVDSFTFVFPIMERI 1021
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMIS-------VLYHVLGVVPSYQAAIGSA 1046
LL K+T HDDVL+++Y HMD LPLPR+RM+S VLYH L VVP+Y+A+IG A
Sbjct: 1022 LLCSKKTKFHDDVLRLIYLHMDAHLPLPRVRMLSVIFPTLHVLYHALSVVPAYKASIGPA 1081
Query: 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV 1106
LNEL LG QP+EVASAL+GVY KDVHVRMACLNAVKCIPAVS+RSLP+N EV+TS+WIA+
Sbjct: 1082 LNELSLGFQPDEVASALYGVYAKDVHVRMACLNAVKCIPAVSSRSLPQNTEVATSIWIAL 1141
Query: 1107 HDPEK---------------SVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAA 1151
HDPEK SVAE AEDIWD YG+DFGTD+SG+FKALSH NYNVRLAAA
Sbjct: 1142 HDPEKKLLFLALGEFGWMSTSVAEVAEDIWDHYGFDFGTDFSGIFKALSHVNYNVRLAAA 1201
Query: 1152 EALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK 1211
EALA ALDE+PD IQ SLSTLFSLYIRD+G+G DNVDAGWLGRQG+ALALHSAADVLRTK
Sbjct: 1202 EALAAALDEHPDLIQESLSTLFSLYIRDMGIGNDNVDAGWLGRQGVALALHSAADVLRTK 1261
Query: 1212 DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEE 1271
DLPV+MTFLISRALAD NADVRGRM+N+GI+IIDK+G+DNVSLLFPIFENYLNK A DEE
Sbjct: 1262 DLPVVMTFLISRALADLNADVRGRMINSGILIIDKNGKDNVSLLFPIFENYLNKTAPDEE 1321
Query: 1272 KYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331
+YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE+VQRAVS+CLSPLMQS
Sbjct: 1322 QYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSESVQRAVSACLSPLMQSK 1381
Query: 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
QDEA TLV+RLLDQ+MKS+KYGERRGAAFGLAGVVKGFG+S LKKY I L+E LA+RN
Sbjct: 1382 QDEADTLVTRLLDQMMKSEKYGERRGAAFGLAGVVKGFGLSCLKKYKIVIILQECLAERN 1441
Query: 1392 SAKRREGALLAFECLCEKLGRLFEP---------YVIQMLPLLLVAFSDQVVAVREAAEC 1442
SAK REGALL FECLCE LG+LFEP YVIQMLPLLLV+FSDQV AVREAAEC
Sbjct: 1442 SAKSREGALLGFECLCETLGKLFEPYVDKFLTHKYVIQMLPLLLVSFSDQVAAVREAAEC 1501
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1502 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1561
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTD+HPKVQSAGQTALQQVGSVIKNPEIA+LVPTLL GL+DPN+HTKYSLDILLQ
Sbjct: 1562 KLTEVLTDSHPKVQSAGQTALQQVGSVIKNPEIAALVPTLLKGLSDPNEHTKYSLDILLQ 1621
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTFVN++DAPSLALLVPIVHRGLR RSA+TKK+A+QIVGNMCSLVTEPKDMIPYIGLLLP
Sbjct: 1622 TTFVNSIDAPSLALLVPIVHRGLRVRSADTKKRASQIVGNMCSLVTEPKDMIPYIGLLLP 1681
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLI GMGE+NFPDLV WL + LKSDNSNVERSGAAQGL
Sbjct: 1682 EVKKVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGL 1741
Query: 1683 SEVL-------------------AALGTVYFEHILP------------------------ 1699
SEVL +G F ++P
Sbjct: 1742 SEVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGLSE 1801
Query: 1700 ---------------DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744
DIIRNCSHQ+ASVRDGYLTLFKYLPRSLGVQFQ YL QVLPAILD
Sbjct: 1802 VLAALGVEFFEHVFPDIIRNCSHQKASVRDGYLTLFKYLPRSLGVQFQKYLPQVLPAILD 1861
Query: 1745 GLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELL 1799
GLADENESVRDAALGAGHVLVEHYATT SLPLLLPAVEDGI ND+WRIRQSSVELL
Sbjct: 1862 GLADENESVRDAALGAGHVLVEHYATTYALSLSLPLLLPAVEDGIINDSWRIRQSSVELL 1921
Query: 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
GDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR+KRNE+LAALYMVR+DVSLS
Sbjct: 1922 GDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGREKRNEILAALYMVRADVSLS 1981
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
VRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLAS+SSERRQVAGR+LGELV KLGER
Sbjct: 1982 VRQAALHVWKTIVANTPKTLREIMPVLMDTLIASLASASSERRQVAGRSLGELVGKLGER 2041
Query: 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979
VLP IIPILS+GL DP +SRRQGVC GLSEVMASAGKSQL++FM +LIPTIRTALCDS
Sbjct: 2042 VLPLIIPILSQGLSDPDSSRRQGVCSGLSEVMASAGKSQLMTFMTDLIPTIRTALCDSEP 2101
Query: 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039
VRESAGLAFSTL+KSAGMQAIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPH
Sbjct: 2102 AVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDKTSDTALDGLKQILSVRTSAVLPH 2161
Query: 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAE 2099
ILPKLVH PLSAFNAHALGALAEVAGPGL+FHLGT+LP LLSAM D D +VQ+ AK+AAE
Sbjct: 2162 ILPKLVHPPLSAFNAHALGALAEVAGPGLDFHLGTVLPPLLSAMSDVDQEVQTSAKKAAE 2221
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
TV LVIDEEGVE L+SELLKGV D+QA+IRRSS+YLIGYF+KNSKLYLVDEAPNMISTLI
Sbjct: 2222 TVVLVIDEEGVEPLISELLKGVSDSQAAIRRSSSYLIGYFFKNSKLYLVDEAPNMISTLI 2281
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
VLLSD DS+TV AWEALSRV+ SVPKEV PSYIK++RDA+S+SRDKERRKKKGGP+LIP
Sbjct: 2282 VLLSDPDSSTVTVAWEALSRVIMSVPKEVLPSYIKLVRDAVSSSRDKERRKKKGGPVLIP 2341
Query: 2220 GFCLPKALQPLLPIFLQ 2236
GFCLPK+LQP+LPIFLQ
Sbjct: 2342 GFCLPKSLQPILPIFLQ 2358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254318|ref|NP_176659.6| protein ILITYHIA [Arabidopsis thaliana] gi|332196168|gb|AEE34289.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3393 bits (8799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1670/2216 (75%), Positives = 1921/2216 (86%), Gaps = 18/2216 (0%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 23 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 82
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 83 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 142
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 143 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 202
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 203 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 262
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 263 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 322
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 323 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 382
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 383 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 442
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 443 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 502
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 503 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 562
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 563 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 622
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 623 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 682
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 683 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 742
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 743 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 787
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 788 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 847
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 848 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 907
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 908 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 965
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FPI+ERILLS KRT LHDDVLQ+LY H+DP+LPLPRLRMISVLYHVLGVVP+YQA++
Sbjct: 966 TFIFPILERILLSSKRTKLHDDVLQILYMHLDPMLPLPRLRMISVLYHVLGVVPAYQASV 1025
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1026 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1085
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1086 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1145
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1146 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1205
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1206 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1265
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1266 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1325
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1326 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1385
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1386 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1445
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEVLTDTHPKVQSAGQ AL
Sbjct: 1446 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVLTDTHPKVQSAGQLAL 1505
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
QQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALLVPIVHR
Sbjct: 1506 QQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALLVPIVHR 1565
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
GLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+
Sbjct: 1566 GLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAV 1625
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+ILPD+IR
Sbjct: 1626 GSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENILPDLIR 1685
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAALGAGHV
Sbjct: 1686 HCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAALGAGHV 1745
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823
LVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG
Sbjct: 1746 LVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1805
Query: 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883
ASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTLKEIM
Sbjct: 1806 ASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPKTLKEIM 1865
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGV 1943
P+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP +RQGV
Sbjct: 1866 PILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDVDKRQGV 1925
Query: 1944 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003
CIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG+QA+DE
Sbjct: 1926 CIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAGLQAMDE 1985
Query: 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV 2063
I+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHALGALAEV
Sbjct: 1986 IIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHALGALAEV 2045
Query: 2064 AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
AG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SELLKGV D
Sbjct: 2046 AGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSELLKGVSD 2105
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL+RV+ S
Sbjct: 2106 SQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEALARVIGS 2165
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFV 2239
VPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQ +
Sbjct: 2166 VPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQGLI 2221
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183637|ref|NP_001185313.1| protein ILITYHIA [Arabidopsis thaliana] gi|332196169|gb|AEE34290.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3300 bits (8557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1638/2222 (73%), Positives = 1885/2222 (84%), Gaps = 63/2222 (2%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 142 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 201
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 202 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 261
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 262 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 321
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 322 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 381
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 382 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 441
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 442 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 501
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 502 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 561
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 562 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 621
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 622 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 681
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 682 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 741
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 742 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 801
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 802 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 861
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 862 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 906
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 907 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 966
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 967 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 1026
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 1027 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 1084
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FP VLYHVLGVVP+YQA++
Sbjct: 1085 TFIFP---------------------------------------VLYHVLGVVPAYQASV 1105
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1106 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1165
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1166 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1225
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1226 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1285
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1286 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1345
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1346 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1405
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1406 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1465
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1466 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1525
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV------LTDTHPKVQS 1517
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEV LTDTHPKVQS
Sbjct: 1526 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVFKTIQVLTDTHPKVQS 1585
Query: 1518 AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
AGQ ALQQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALL
Sbjct: 1586 AGQLALQQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALL 1645
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
VPIVHRGLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS
Sbjct: 1646 VPIVHRGLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1705
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
VAARA+GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+I
Sbjct: 1706 VAARAVGSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENI 1765
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757
LPD+IR+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAA
Sbjct: 1766 LPDLIRHCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAA 1825
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
LGAGHVLVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG
Sbjct: 1826 LGAGHVLVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1885
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
GSDDEGASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPK
Sbjct: 1886 GSDDEGASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPK 1945
Query: 1878 TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937
TLKEIMP+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP
Sbjct: 1946 TLKEIMPILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDV 2005
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+RQGVCIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG
Sbjct: 2006 DKRQGVCIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAG 2065
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
+QA+DEI+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHAL
Sbjct: 2066 LQAMDEIIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHAL 2125
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
GALAEVAG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SEL
Sbjct: 2126 GALAEVAGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSEL 2185
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
LKGV D+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL
Sbjct: 2186 LKGVSDSQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEAL 2245
Query: 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQV 2237
+RV+ SVPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQ
Sbjct: 2246 ARVIGSVPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQG 2305
Query: 2238 FV 2239
+
Sbjct: 2306 LI 2307
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2256 | ||||||
| UNIPROTKB|F1NAK4 | 2672 | GCN1L1 "Uncharacterized protei | 0.493 | 0.416 | 0.438 | 2.6e-303 | |
| RGD|1593434 | 2672 | Gcn1l1 "GCN1 general control o | 0.523 | 0.441 | 0.431 | 6.8e-303 | |
| UNIPROTKB|Q92616 | 2671 | GCN1L1 "Translational activato | 0.508 | 0.429 | 0.435 | 1.3e-301 | |
| UNIPROTKB|F1MZT7 | 2676 | GCN1L1 "Uncharacterized protei | 0.508 | 0.428 | 0.437 | 3.9e-298 | |
| FB|FBgn0039959 | 2630 | CG17514 [Drosophila melanogast | 0.511 | 0.438 | 0.433 | 2.5e-284 | |
| DICTYBASE|DDB_G0279487 | 2667 | DDB_G0279487 "GCN1-like protei | 0.629 | 0.532 | 0.373 | 1.2e-253 | |
| ASPGD|ASPL0000003073 | 2672 | AN10734 [Emericella nidulans ( | 0.513 | 0.433 | 0.381 | 2.2e-225 | |
| UNIPROTKB|G4MR95 | 2678 | MGG_04710 "Translational activ | 0.601 | 0.507 | 0.344 | 4.3e-217 | |
| POMBASE|SPAC18G6.05c | 2670 | SPAC18G6.05c "translation elon | 0.459 | 0.388 | 0.391 | 9.9e-214 | |
| UNIPROTKB|F1RJK5 | 1280 | GCN1L1 "Uncharacterized protei | 0.390 | 0.687 | 0.468 | 3e-211 |
| UNIPROTKB|F1NAK4 GCN1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2414 (854.8 bits), Expect = 2.6e-303, Sum P(4) = 2.6e-303
Identities = 501/1142 (43%), Positives = 721/1142 (63%)
Query: 1102 LWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDE 1160
LW+ D E + + AE +W+ G + D S L K + + VR +
Sbjct: 1130 LWVVKFDVEDEIQKLAERLWESMGLELQPDLCSLLIKDVIYHEEAVRQAGAEALSKAVAQ 1189
Query: 1161 YPDSIQGSLSTLFSLYIRDI--------GLG---GDNVDAGWLGRQGIALALHSAADVLR 1209
Y ++ L +Y + LG ++ W R GIALAL+ ++ L
Sbjct: 1190 YQHQAAEVMNKLTEIYQEKLYRPPPVLDALGRVISESPPDQWEARCGIALALNKLSEHLD 1249
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ + + F + AL D N +VR ML+A + ++ HG+DNV+ L P+FE +L K A +
Sbjct: 1250 SSQVKPLFQFFVPDALNDRNPEVRKCMLDAALSTLNTHGKDNVNSLLPVFEEFL-KNAPN 1308
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ YD VR+ VVI G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+
Sbjct: 1309 DASYDAVRQSVVILMGSLAKHLDKSDPKVKPIVGKLIAALSTPSQQVQESVASCLPPLVP 1368
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
+++++A ++ +L+ L++SDKY ER+GAA+GLAG+VKG GI SLK+ + TL + + D
Sbjct: 1369 AIKEDAGGMIQKLMQLLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMTTLTDAIQD 1428
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMS 1449
+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS
Sbjct: 1429 KKNFRRREGALFAFEMLCSMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMS 1488
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQS--SVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507
LS GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEV
Sbjct: 1489 NLSTHGVKLVLPSLLAALEEESWRTKAGTGSVELLGAMAYCAPKQLSSCLPNIVPKLTEV 1548
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567
LTD+H KVQ+AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+
Sbjct: 1549 LTDSHVKVQNAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVH 1608
Query: 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627
+DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K
Sbjct: 1609 FIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKAS 1667
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687
L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A
Sbjct: 1668 LLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMA 1727
Query: 1688 ALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LG E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL
Sbjct: 1728 GLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFIPYVGPIIPCILKA 1787
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENE VRD AL AG ++ YA T++ LLLP +EDG+F+D WRIR SSV+LLGDLLF
Sbjct: 1788 LADENEFVRDTALRAGQRIISMYAETAIALLLPQLEDGLFDDLWRIRFSSVQLLGDLLFH 1847
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
++G +GK E S+D+ T +AII LG ++RN VLA LYM RSD L VRQA+L
Sbjct: 1848 ISGVTGKMTTETASEDDNFGTAQSNKAIINALGVERRNRVLAGLYMGRSDTQLVVRQASL 1907
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSII 1925
HVWK +V+NTP+TL+EI+P L L+ ++R VA R LG+LVRKLGE++LP II
Sbjct: 1908 HVWKIVVSNTPRTLREILPTLFGLLLKFLASTCADKRTVAARTLGDLVRKLGEKILPEII 1967
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL GL+ RQGVCIGLSE+M S + +L F + L+PT+R ALCD + EVRE+A
Sbjct: 1968 PILEDGLRSDKNDERQGVCIGLSEIMKSTSRDAVLVFSESLVPTVRKALCDPLEEVREAA 2027
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
F L + G QA+++I+P LL L++++TSD A+DGLKQ+++V++ VLP+++PKL
Sbjct: 2028 AKTFEQLHSTIGHQALEDILPFLLKQLDNEETSDFAVDGLKQVMAVKSRVVLPYLVPKLT 2087
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLV 2104
P+ N L L+ VAG L HL ILPA++SA+ + + L ++V L
Sbjct: 2088 TPPV---NTRVLAFLSSVAGDALTRHLSVILPAMMSALKEKLGTSEEQLEMANCQSVILS 2144
Query: 2105 I-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 2163
+ D + +R+++A ++ + +K N++S LI L +
Sbjct: 2145 VEDDVGQRIITEDLLEATRSPDVGMRQAAAIILNIYCSKTKADYTGHLKNLVSGLIRLFN 2204
Query: 2164 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223
D++ + +W+AL+ + + Q + I+ + I ++ + + +PGFC+
Sbjct: 2205 DTNPVVLNESWDALNSITKKLDAGNQLALIEDLHKDIRVVGNEAKGEH------VPGFCI 2258
Query: 2224 PK 2225
PK
Sbjct: 2259 PK 2260
|
|
| RGD|1593434 Gcn1l1 "GCN1 general control of amino-acid synthesis 1-like 1 (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2442 (864.7 bits), Expect = 6.8e-303, Sum P(3) = 6.8e-303
Identities = 525/1217 (43%), Positives = 748/1217 (61%)
Query: 1051 CLGLQPNEVASALHGVYTKDVHVRMACLNAVK----CIPAVSTRSLPENIEVSTSLWIAV 1106
C + EV L + + VR L + +PA T + + LW+
Sbjct: 1077 CAFAEQEEVDVLLAALQSPCASVRETALRGLMELHLVLPAPDTDE-KNGLNLLRRLWVVK 1135
Query: 1107 HDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDEYPDS- 1164
D E+ + + AE +W G D +D S L + + VR Y
Sbjct: 1136 FDKEEEIRKLAERLWTTMGLDLQSDLCSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQA 1195
Query: 1165 --IQGSLSTLFS--LY----IRDIGLG---GDNVDAGWLGRQGIALALHSAADVLRTKDL 1213
+ G L ++ LY + D LG ++ W R G+ALAL+ + L + +
Sbjct: 1196 AEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQWEARCGLALALNKLSQYLDSSQV 1254
Query: 1214 PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 1273
+ F + AL D N DVR ML+A + ++ HG++NV+ L P+FE +L K A ++ Y
Sbjct: 1255 KPLFQFFVPDALNDRNPDVRKCMLDAALATLNAHGKENVNSLLPVFEEFL-KDAPNDASY 1313
Query: 1274 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333
D VR+ VV+ G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+ ++++
Sbjct: 1314 DAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAVKE 1373
Query: 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393
+A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ +
Sbjct: 1374 DAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNF 1433
Query: 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSA 1453
+RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS LSA
Sbjct: 1434 RRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSA 1493
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H
Sbjct: 1494 HGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHV 1553
Query: 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573
KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+ +DAPS
Sbjct: 1554 KVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPS 1613
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633
LAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+P
Sbjct: 1614 LALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVP 1672
Query: 1634 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
EVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG
Sbjct: 1673 EVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEK 1732
Query: 1694 FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL LADENE
Sbjct: 1733 LEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENE 1792
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VRD AL AG ++ YA T++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +G
Sbjct: 1793 FVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTG 1852
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
K E S+D+ T +AII LG D+RN VLA LYM RSD L VRQA+LHVWK +
Sbjct: 1853 KMTTETASEDDNFGTAQSNKAIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIV 1912
Query: 1872 VANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931
V+NTP+TL+EI+P L L+ ++R +A R LG+LVRKLGE++LP IIPIL G
Sbjct: 1913 VSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEG 1972
Query: 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991
L+ + RQGVCIGLSE+M S + +L F + L+PT R ALCD + EVRE+A F
Sbjct: 1973 LRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQ 2032
Query: 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 2051
L + G QA+++I+P LL L+D++ S+ ALDGLKQ+++V++ VLP+++PKL P+
Sbjct: 2033 LHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAVKSRVVLPYLVPKLTTPPV-- 2090
Query: 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXX 2109
N L L+ VAG L HLG ILPA++ A+ + + L + V L + D
Sbjct: 2091 -NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTG 2149
Query: 2110 XXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169
+ + +R+++A ++ + SK +++S LI L +DS
Sbjct: 2150 HRIIIEDLLEATRSPEVGMRQAAAIILNMYCSRSKADYTSHLRSLVSGLIRLFNDSSPVV 2209
Query: 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQ 2228
+ +W+AL+ + + Q + I+ I ++ R + +PGFCLPK +
Sbjct: 2210 LGESWDALNAITKKLDAGNQLALIEEFHKEIRYIGNECRGEH------VPGFCLPKKGVT 2263
Query: 2229 PLLPIFLQVFVLYTFSP 2245
+LP+ L+ VL T SP
Sbjct: 2264 SILPV-LREGVL-TGSP 2278
|
|
| UNIPROTKB|Q92616 GCN1L1 "Translational activator GCN1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2433 (861.5 bits), Expect = 1.3e-301, Sum P(3) = 1.3e-301
Identities = 514/1180 (43%), Positives = 737/1180 (62%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1113 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDLCSLLIDDVIYH 1171
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1172 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1230
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D + DVR ML+A + ++ HG++
Sbjct: 1231 WEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAALATLNTHGKE 1290
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L+
Sbjct: 1291 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALS 1349
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1350 TPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1409
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1410 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1469
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1470 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1529
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+
Sbjct: 1530 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPS 1589
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+
Sbjct: 1590 RKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQ 1648
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L +
Sbjct: 1649 KDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQ 1708
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG 1728
S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP + G
Sbjct: 1709 SSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFG 1768
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN 1788
+F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F+D
Sbjct: 1769 DKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDL 1828
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG ++RN VLA
Sbjct: 1829 WRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAG 1888
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRA 1908
LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A R
Sbjct: 1889 LYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAART 1948
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S + +L F + L+P
Sbjct: 1949 LGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVP 2008
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
T R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGLKQ+
Sbjct: 2009 TARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQV 2068
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-D 2087
+++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2069 MAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLG 2125
Query: 2088 MDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146
+ L + V L + D + + +R+++A ++ + SK
Sbjct: 2126 TPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIILNIYCSRSKAD 2185
Query: 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
+++S LI L +DS + +W+AL+ + + Q + I+ + I ++
Sbjct: 2186 YTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRLIGNE 2245
Query: 2207 ERRKKKGGPILIPGFCLPK-ALQPLLPIFLQVFVLYTFSP 2245
+ + +PGFCLPK + +LP+ L+ VL T SP
Sbjct: 2246 SKGEH------VPGFCLPKKGVTSILPV-LREGVL-TGSP 2277
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| UNIPROTKB|F1MZT7 GCN1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2438 (863.3 bits), Expect = 3.9e-298, Sum P(2) = 3.9e-298
Identities = 518/1183 (43%), Positives = 738/1183 (62%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1115 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSTMGLDLQPDLCSLLIDDVIYH 1173
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1174 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1232
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D N DVR ML+A + ++ HG++
Sbjct: 1233 WEARCGLALALNKLSQCLDSSQVKPLFQFFVPDALNDRNPDVRKCMLDAALATLNTHGKE 1292
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L
Sbjct: 1293 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALA 1351
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V++CL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1352 TPSQQVQESVANCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1411
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1412 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1471
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1472 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1531
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLT 1547
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI A++ P LL LT
Sbjct: 1532 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILGHAAIAPVLLDALT 1591
Query: 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607
DP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL
Sbjct: 1592 DPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL- 1650
Query: 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 1667
T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L
Sbjct: 1651 TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLT 1710
Query: 1668 SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPR 1725
+ S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP
Sbjct: 1711 YEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPI 1770
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785
+ G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F
Sbjct: 1771 TFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLF 1830
Query: 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845
+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG D+RN V
Sbjct: 1831 DDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVDRRNRV 1890
Query: 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVA 1905
LA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A
Sbjct: 1891 LAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIA 1950
Query: 1906 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965
R LG+LVRKLGE++LP IIPIL GL+ P + RQGVCIGLSE+M S + +L F +
Sbjct: 1951 ARTLGDLVRKLGEKILPEIIPILEEGLRSPKSDERQGVCIGLSEIMKSTSRDAVLYFSES 2010
Query: 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 2025
L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGL
Sbjct: 2011 LVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGL 2070
Query: 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085
KQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2071 KQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKE 2127
Query: 2086 D-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNS 2143
+ L + V L + D + + +R+++A ++ + S
Sbjct: 2128 KLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMRQAAAIILNIYCSRS 2187
Query: 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203
K +++S LI L +DS + +W+AL+ + + Q + I+ + I
Sbjct: 2188 KADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRFI 2247
Query: 2204 RDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQVFVLYTFSP 2245
++ R + +PGFCLPK + +LP+ L+ VL T SP
Sbjct: 2248 GNESRGEH------VPGFCLPKKGVTSILPV-LREGVL-TGSP 2282
|
|
| FB|FBgn0039959 CG17514 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2427 (859.4 bits), Expect = 2.5e-284, Sum P(4) = 2.5e-284
Identities = 515/1189 (43%), Positives = 736/1189 (61%)
Query: 1073 VRMACLNAVKCIP--AVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAEDIWDRYGYDF 1128
VR L ++K + V+ + ++E + W+A HDPE+ E A +W+ +
Sbjct: 1058 VRKVALQSLKIMVNGIVNHIKVDNSLEKVIINRFWVAKHDPEEENRELALFLWNTAKFPL 1117
Query: 1129 GTDYSGLFKALSHSNYNVRXXXXXXXX--XXXDEYPDSIQGSLSTLFSLYIRDIGLGG-- 1184
Y + ++HS ++ DE + LFS+Y + L
Sbjct: 1118 -PGYVDIINDITHSETCIQKSASESLIPLLAGDEVLKKCV--IKKLFSIYKAKLSLLPPV 1174
Query: 1185 -DNVDAG-------WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRM 1236
D D W R+GIA+A + A +L +D+ IM F++S+ L D V M
Sbjct: 1175 LDQFDREIEPAIDQWKPRRGIAIAFSTIAFLLSIEDINDIMNFMVSQGLGDREDVVHKEM 1234
Query: 1237 LNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP 1296
L + I+D HG + L P+FE++L+K A + YD +R+ VVI G+LA+HL KDD
Sbjct: 1235 LATALKIVDLHGNKAIENLLPVFEDFLDK-APKSQSYDNIRQAVVILMGSLARHLEKDDK 1293
Query: 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERR 1356
++ +V +L+ L+TPS+ VQ AVS+CL LM S++DEAP+++ +LL L KS+KYGERR
Sbjct: 1294 RIDPIVKRLITSLSTPSQQVQEAVSNCLPHLMPSVKDEAPSMIKKLLHSLAKSEKYGERR 1353
Query: 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416
GAA+G+AG+VKG GI SLK+ I + L + D+ + + REGAL AFE LC LGRLFEP
Sbjct: 1354 GAAYGIAGIVKGLGILSLKQLDIMSKLTAFIQDKKNYRSREGALFAFEVLCSTLGRLFEP 1413
Query: 1417 YVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
Y++ +LP LL F D +M +LSA GVKLVLPSLL+ L++ +WRTK
Sbjct: 1414 YIVHVLPHLLQCFGDPSQYVRQAADDTAKVVMRKLSAHGVKLVLPSLLEALDEDSWRTKT 1473
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536
+SV+LLGAMA+CAP+QLS CLP IVPKL +VL D+H KVQ +G AL+ +GSVIKNPEI
Sbjct: 1474 ASVELLGAMAFCAPKQLSSCLPSIVPKLIQVLGDSHTKVQESGGEALKVIGSVIKNPEIQ 1533
Query: 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
++VP LL L DP+++T L LL+T F++ +DAPSLAL++P+V R +RS ET+K A
Sbjct: 1534 AIVPVLLDALEDPSNNTSTCLQSLLKTKFIHFIDAPSLALIMPVVQRAFMDRSTETRKMA 1593
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
AQI+GNM SL T+ KD+ PY+ ++P +K L+DP+PEVR+V+ARA+G++++GMGE +F
Sbjct: 1594 AQIIGNMYSL-TDQKDLAPYLPSIIPGLKSSLLDPVPEVRAVSARALGAMVKGMGESSFE 1652
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRD 1714
+L+ WL++ L S++S+V+RSGAAQGLSEV+ LG ++P+II A V+D
Sbjct: 1653 NLLPWLMETLTSESSSVDRSGAAQGLSEVVGGLGVEKMHKLMPEIISTAERVDIAAHVKD 1712
Query: 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774
GY+ +F Y+P + +F Y+ Q++ IL LADE+E VRD AL AG +V YA T++
Sbjct: 1713 GYIMMFIYMPGAFQEEFTPYIGQIINPILKALADESEFVRDTALKAGQRIVNLYAETAVA 1772
Query: 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834
LLLP +E G+F+DNWRIR SSV+LLGDLL++++G SGK E S+D+ TE AII
Sbjct: 1773 LLLPELEKGLFDDNWRIRYSSVQLLGDLLYRISGVSGKMTTETASEDDNFGTEHSHTAII 1832
Query: 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXX 1894
LG ++RN VL+ LYM RSDVSL VRQAALHVWK +V NTP+TL+EI+P L L+
Sbjct: 1833 HFLGDERRNRVLSGLYMGRSDVSLMVRQAALHVWKVVVTNTPRTLREILPTLFGLLLGCL 1892
Query: 1895 XXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954
++RQVA R LG+LVRKLGERVLP IIPIL GL +RQGVCIGLSE+M S
Sbjct: 1893 ASTSYDKRQVAARTLGDLVRKLGERVLPEIIPILENGLNSDHPDQRQGVCIGLSEIMGST 1952
Query: 1955 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014
K +L+F+D L+PT+R ALCD + EVRE+A F +L + G +A+DEI+P +L L D
Sbjct: 1953 SKEMVLTFIDSLVPTVRKALCDPLPEVREAAAKTFESLHSTVGSRALDEILPFMLQGLSD 2012
Query: 2015 DQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL 2072
++ LDGL+Q++S+++ VLP+++P+L P+ N AL L VAG L +L
Sbjct: 2013 ADPFVAENTLDGLRQVMSIKSKVVLPYLVPQLTSPPV---NTKALSILVSVAGEALIKYL 2069
Query: 2073 GTILPALLSAMGDD-DMDVQSLAKEAAETVTL-VIDXXXXXXXXXXXXKGVGDNQASIRR 2130
IL +LL A+ D + E +TV L V D + R+
Sbjct: 2070 PKILSSLLEALSDAYGYPNEPQENEYCQTVILSVTDETGIRTIMDTLLISANSSDLCTRK 2129
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190
S+A L+ F +S + P ++ L+ LL +SD + +WEAL+ V+ + Q
Sbjct: 2130 SAASLLSAFCIHSPGNYYEYIPQLLRCLLKLLVESDKDILQKSWEALNAVIKGMNAAQQI 2189
Query: 2191 SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFV 2239
++ +R A+ + + + +PGFCLPK + PLLP+F + +
Sbjct: 2190 CHVSDVRQAVRFAASELEGTE------LPGFCLPKGITPLLPVFREAIL 2232
|
|
| DICTYBASE|DDB_G0279487 DDB_G0279487 "GCN1-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 2332 (826.0 bits), Expect = 1.2e-253, Sum P(3) = 1.2e-253
Identities = 547/1465 (37%), Positives = 826/1465 (56%)
Query: 793 EEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTXXXXXXXXXXXXXXS- 851
E+Q+ + ++ K ++A + +K I + KK G+ +
Sbjct: 833 EKQEQLVESRNDRKVKPKTAEEQRDEESRKRI-EEKKKIQSGELEKQEKERQKQLAAQAV 891
Query: 852 IREKVQGVQRNLSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEAL 909
IR+ VQ V L L + MA +NP F + ++ + L++ I +
Sbjct: 892 IRKDVQDVIDRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVF 951
Query: 910 VKLSRCTAMPLCNWALDIATALRLI-VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNG 968
KL C +P + LD + A I + ++ P++ E + L ++I+
Sbjct: 952 EKLICC--VP-SRFKLDRSFARHYIYIINNIYYR----PTLSEI----QILGFIQKILTH 1000
Query: 969 LTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDXXXXXXXXXMISV 1028
+ S L +F + +PII+ L + + + ++++ KH MIS
Sbjct: 1001 IRESIAKEALSGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISS 1060
Query: 1029 LYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVS 1088
L V+ +A + + +L G++ +++ + G+ +K V VR CL A++ IP++
Sbjct: 1061 LIIVVSTNSRLEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIY 1120
Query: 1089 TRSLPENIEVSTSLWIAVHDPEKSVAEA-AEDIWDRYGYDFGTDYSGLF-KALSHSNYNV 1146
+ S + SLW A D + A AE IW + T F K LS S +NV
Sbjct: 1121 SPSFVWEDKYIGSLWFARFDNHDANTSALAEKIW--LATNQPTQLPEDFMKLLSDSTFNV 1178
Query: 1147 RXXXXXXXXXXXDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
E + I + LF +Y ++ R +A AL
Sbjct: 1179 NSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALS 1238
Query: 1203 SAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
+ ++ + L + T +I R L D +V ++ G+ II++ G L FE
Sbjct: 1239 GLGNAIVEPEVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEA 1298
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
+L + + + D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S
Sbjct: 1299 FLARPDNGTGEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGIS 1358
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380
C++ L+ S + + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I
Sbjct: 1359 KCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSIL 1418
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXX 1440
TL+ + D+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D
Sbjct: 1419 DTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDAT 1478
Query: 1441 XXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+MSQLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP I
Sbjct: 1479 ADTAKAIMSQLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTI 1538
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 1560
VPKLT VL DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ L
Sbjct: 1539 VPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENL 1598
Query: 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
L T +V+T+D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L
Sbjct: 1599 LSTNYVHTIDPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNIL 1657
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+P +K VL+DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQ
Sbjct: 1658 MPVMKTVLLDPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQ 1717
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
GLSEVLA+L F ++ +++ + R VR+G L++F + P SLG F YL +VLP
Sbjct: 1718 GLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLP 1777
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+L GLAD+++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L G
Sbjct: 1778 QVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFG 1837
Query: 1801 DLLFKVAGTSGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
DLLFK+AGT+ + + S DD+ + G I ++LG+++ +L++LYM+R D
Sbjct: 1838 DLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFD 1897
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRK 1915
+ SVRQ L +WK IV+NTPKTL+EI+P L+ +I E+RQ++ + LG++V K
Sbjct: 1898 NNSSVRQKVLLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSK 1957
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
L +R+LP I+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALC
Sbjct: 1958 LSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALC 2016
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA---LDGLKQILSVR 2032
D +++VRE+A AF L+ + G +A +EI+P L+ L++ D A LDGL+Q++ VR
Sbjct: 2017 DPLIDVREAAAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVR 2076
Query: 2033 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD-MDVQ 2091
++ VLP ++PKL+ P+S N AL +LA AG GL HL TI+P+L+ + + + +
Sbjct: 2077 SSIVLPVLIPKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNA 2136
Query: 2092 SLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151
KEAA ++ ID + +IR + LIG FY + + V E
Sbjct: 2137 KEIKEAAVSICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNTM--VTEY 2194
Query: 2152 PN-MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210
P ++ +L+ L +D D+ AA AL + S+ K+ +Y+ V + I ++ +
Sbjct: 2195 PEELLLSLLSLFNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEE 2253
Query: 2211 KKGGPILIPGFCLPKALQPLLPIFL 2235
IPGFCLPK L +LP+ +
Sbjct: 2254 VS----TIPGFCLPKGLASVLPVLI 2274
|
|
| ASPGD|ASPL0000003073 AN10734 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1963 (696.1 bits), Expect = 2.2e-225, Sum P(4) = 2.2e-225
Identities = 460/1205 (38%), Positives = 707/1205 (58%)
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
+ NEV L G D VR A L A+ ++ E+I W+ HD +
Sbjct: 1066 INENEVNVLLKGTIVSDPSVRSAVLQAIDAEIDLTDMDFSEHI------WLECHDHVEEN 1119
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSL-ST 1171
AE AE IW+ G + T Y L L + N+R E S+ G + S
Sbjct: 1120 AEIAESIWEENGLEIDETAYGKLIPYLDSRDSNLRGAAARAIAHAI-ESNHSVFGDIISQ 1178
Query: 1172 LFSLYIRDI----------GLGG--DNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTF 1219
L S Y +I G+ D D W R GIALA + ++ + + F
Sbjct: 1179 LQSKYEFEIRPKEPEKDKYGMPKKVDTTDH-WESRSGIALAFGAMQNLFEGDQIVSFLRF 1237
Query: 1220 LISRA-LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LI R L D ++ VR +M ++G +I G++ V L + E L E DL+ E
Sbjct: 1238 LIERGPLIDRSSVVRDQMADSGKGVIAARGQEKVEELMKLLETTLETSDKGSETSDLLNE 1297
Query: 1279 GVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
VV+ G+LA+HL DDP++ V+ +LL L TPSE+VQ AVS CL PL++ ++
Sbjct: 1298 AVVVLYGSLAQHLKSDDPRLQTVIKRLLATLPTPSESVQSAVSDCLPPLIRLAGRQSGKY 1357
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+LDQ+++S Y +RGAA+GLAG+VKG GI +L+++ + L++ ++ +R G
Sbjct: 1358 AQEMLDQILQSKDYATQRGAAYGLAGIVKGRGIVTLREFRVMPHLQDAAENKKEPHKRLG 1417
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKL 1458
AL+A+E LGR +EPYVIQ++P LL +F D S LS+ GVK
Sbjct: 1418 ALMAYELFATILGRTYEPYVIQVVPQLLTSFGDPNADVREACLYTAKACFSNLSSYGVKK 1477
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP+LL+GL+D WR+++ + LLGAMAY PQQL+ LP+I+P LT VL DTH +V++A
Sbjct: 1478 ILPTLLEGLDDTQWRSQKGACDLLGAMAYLDPQQLAVSLPEIIPPLTVVLNDTHKEVRNA 1537
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+LQ+ G VI NPEI SLV LL L+DP T +LD L++ +FV+ +DAPSLAL+V
Sbjct: 1538 ANRSLQRFGEVISNPEIKSLVNVLLKALSDPTKFTDEALDALIKVSFVHYLDAPSLALVV 1597
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
I+ RGL +RSA TK+K+AQI+G++ L TE KD+I ++ +++ + +VDP+P R+
Sbjct: 1598 RILERGLGDRSA-TKRKSAQIIGSLAHL-TERKDLITHLPIIVSGLNLAIVDPVPTTRAT 1655
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698
A++A+GSLI +GE+ PDL+ L+ LKSD +R G+AQ LSEVLA LGT E L
Sbjct: 1656 ASKALGSLIEKLGEDALPDLIPNLMSTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETL 1715
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
P I++N S +A++R+G++TLF YLP G F YL +++P IL GLAD+ +++R+ +L
Sbjct: 1716 PTILQNVSSSKATIREGFMTLFIYLPACFGNSFAPYLGRIIPPILAGLADDVDTIRETSL 1775
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818
AG +LV+++++ ++ LLLP +E G+ +D++RIR SSVEL+GDLLF + G + K E
Sbjct: 1776 RAGRLLVKNFSSKAIDLLLPELERGLADDSYRIRLSSVELVGDLLFSITGITAKT--EAE 1833
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878
+DE A+ +A G++++EVLG ++R++VL+AL++ R D S V+ AA+ VWK++VA+ P+T
Sbjct: 1834 EEDEEAA-QA-GQSLLEVLGEERRDKVLSALFICRCDTSGLVKTAAMGVWKSLVAS-PRT 1890
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSA 1937
LKE++P L +I E++ +A ALG+L++K GE VL +++P L GL+ P
Sbjct: 1891 LKEMVPTLSQLIIRRLGSSNMEQKVIASNALGDLIKKAGESVLATLLPTLEDGLQTSPDV 1950
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+QG+CI L E++AS+ L + LI +R AL D+ +VRE+A AF L + G
Sbjct: 1951 DVKQGICIALKEIIASSSPDALEDYEKILISIVRVALVDNDDDVREAAAEAFDALQQILG 2010
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA--VLPHILPKLVHLPLSAFNAH 2055
+A+D+++P LL L +D+ ++ AL L +L+ +T A +LP+++P L+ P+S FNA
Sbjct: 2011 KKAVDQVLPHLLLLLRNDEDAEQALSALLTLLTEQTRANIILPNLIPTLLTSPISTFNAK 2070
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDXXXXXXX 2113
AL +LAEVAG + L TIL L+ + DD + L +A T+ + +D
Sbjct: 2071 ALASLAEVAGSAMARRLPTILNTLMDNIITCKDDEQRKEL-DDAFSTILVSVDEFDGLNV 2129
Query: 2114 XXXXXKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAA 2172
+ + RR+ +A + F+ ++++ ++I L++ D D V A
Sbjct: 2130 MMSVMLALIKHDDERRRTRAADHLRRFFSDAEIDFSRYHQDLIRVLLISFDDPDKDVVKA 2189
Query: 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLL 2231
AW ALS + + + KE ++V+ ++ T ++ K G P +PGF LPK + +L
Sbjct: 2190 AWGALSGLTSRLRKEE----MEVL--SVPT---RQILKGVGVPGADLPGFSLPKGITAIL 2240
Query: 2232 PIFLQ 2236
PIFLQ
Sbjct: 2241 PIFLQ 2245
|
|
| UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1987 (704.5 bits), Expect = 4.3e-217, Sum P(2) = 4.3e-217
Identities = 489/1420 (34%), Positives = 762/1420 (53%)
Query: 851 SIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQL-PSLVKFVDPLLQSP--IVGDVAYE 907
+IRE+V+GV + + + +A P A + P++ +D + I GD A
Sbjct: 858 AIRERVRGVAAKVMRGVGVIKSLATGPPTDATLWMGPAVNALLDAVDAGACLITGDAAPT 917
Query: 908 ALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVN 967
A + + + L ++ I A T H +L+P E K + L R++
Sbjct: 918 AYLACADRVSSRLGSFRQFIGVA-----TLRAH-GVELLP---ENLKAEPFEDLVTRVMY 968
Query: 968 GLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD-----VL--QMLYKHMDXXXXX 1020
L + + P V S ++ P+ IL +D VL ++L H D
Sbjct: 969 RLRFAGEQRPFDVVSVNYMLPLALLILNKGGFGATAEDRDTHLVLATELLSFHTDTASSE 1028
Query: 1021 XX--XXMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN----EVASALHGVYTKDVHVR 1074
M+ L + V + I +++ + PN E+ G VR
Sbjct: 1029 ALPRAQMLETLISSMQVYNQHYKIIRDCFSDMVRCVAPNISEKEIGVVARGAIVPQTSVR 1088
Query: 1075 MACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS- 1133
L ++ +S +E S +WIA H+ + E A++IW+ G+ D
Sbjct: 1089 TTVLQSISADVDMS------ELEFSEEIWIAYHEDSEENVELAKEIWEESGFQTSKDVPV 1142
Query: 1134 GLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSLSTLFSLYIR----------DIGLG 1183
+ L + +R +P+++ L L Y+ + G+
Sbjct: 1143 KMLPYLESKDGQLRKAASRALAEACSNHPETVNLILEKLRLAYVEFAKPRVPELDEFGMP 1202
Query: 1184 GD-NVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRA-LADTNADVRGRMLNAGI 1241
++ W R GIA + A L+ + L FLI + L D N VR ML A
Sbjct: 1203 KKMDLSDPWEARHGIASSFKELAPYLKREHLDSFFAFLIEQGPLGDQNGSVRAEMLEAAN 1262
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
I+ HG+ V L FE L D V E V+I GALA+HL D K+ V
Sbjct: 1263 KAIEIHGKGMVDKLMKTFETTLEAPDKGSAAADRVNEAVIIMYGALARHLKAGDAKIPVV 1322
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFG 1361
+++L+ L+TPSEAVQ A++ CL PL+++ +++ +++ L+ S Y +RGAA+G
Sbjct: 1323 IERLIATLSTPSEAVQYAIAECLPPLVKACGNKSSKYFDEIMETLLTSKNYAVQRGAAYG 1382
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421
LAG+V G GI+SL+++ I + L L ++ A +RE ALLA+E L LGRLFEPYVI +
Sbjct: 1383 LAGLVLGRGIASLREFRIMSNLHSALENKKEANQRESALLAYELLATILGRLFEPYVILI 1442
Query: 1422 LPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
+P LL F D ++LS+ GVK +LP+LL+GL+D WR+K+ + L
Sbjct: 1443 VPQLLAGFGDSNANVRDAALASAKACFARLSSYGVKQILPTLLRGLDDDQWRSKKGACDL 1502
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
LGAMAY PQQL+ LP+I+P LT VL D+H +V+S +L++ G VI NPE+ LV
Sbjct: 1503 LGAMAYLDPQQLALSLPEIIPPLTAVLNDSHKEVRSGANKSLKRFGEVISNPEVKGLVDI 1562
Query: 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601
LL L+DP +T +LD L++ FV+ +DAPSLAL+ I+ RGL +RS TK+KA+Q++G
Sbjct: 1563 LLKALSDPTKYTDEALDSLIKVQFVHYLDAPSLALVSRILQRGLADRS-NTKRKASQVIG 1621
Query: 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661
++ L TE KD++ ++ +L+ +K +VDP+P R+ A+RA+GSL+ +GEE PDL+
Sbjct: 1622 SLAHL-TERKDLVSHLPVLVAGLKIAVVDPVPTTRATASRALGSLMEKLGEEALPDLIPG 1680
Query: 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721
L+ LKSD +R G+AQ LSEVLA LGT E LP I++N + +VR+G+++LF
Sbjct: 1681 LMQTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETLPTILQNVESSKPAVREGFMSLFI 1740
Query: 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781
+LP G F NYL +++P IL GLAD+ E++R+ AL AG +LV+++A ++ LLLP +E
Sbjct: 1741 FLPVCFGNSFANYLGRIIPPILSGLADDIEAIRETALKAGRLLVKNFAVRAVDLLLPELE 1800
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
G+ +D++RIR SSVEL+GDLLF + G SGK E G +DE + G ++ E LG +K
Sbjct: 1801 RGLADDSYRIRLSSVELVGDLLFNLTGISGKT--EDGDEDEEEKVKEAGNSLREALGDEK 1858
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXER 1901
RN++L+ALY+ R D + SVR AA+ VWK +V++ PKTLKE++P L +I E
Sbjct: 1859 RNKILSALYICRCDTATSVRAAAVAVWKALVSS-PKTLKELVPTLTQLIIRRLGSTNMEH 1917
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGKSQLL 1960
+ +A ALGEL+RK G+ VL S++P L GL+ + RQG+C+ L E+++SA + L
Sbjct: 1918 KVIASNALGELIRKAGDNVLSSLLPTLEEGLQTSTDVDARQGICLALKELISSASEEALE 1977
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
LI +RTAL DS EVRE+A AF +L + G +A+D+++P LL+ L + ++
Sbjct: 1978 EHEKILISVVRTALTDSDTEVREAAAEAFDSLQQILGKRAVDQVLPFLLNLLRSEDEAEN 2037
Query: 2021 ALDGLKQILS--VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
AL L +L+ R+ +LP+++P L+ P+SAFNA AL +L+ VAG +N L I+ +
Sbjct: 2038 ALSALLTLLTETTRSNIILPNLIPTLIAPPISAFNAKALASLSRVAGAAMNRRLPNIVNS 2097
Query: 2079 LLSAMGD-DDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSA-YLI 2136
L+ + + D ++ + TV ID + ++ +R++ +
Sbjct: 2098 LMDNLVNCKDDSLREDLDASFHTVISSIDEYDGLNTVMNVLLQLTKHEDHRKRAATGKQL 2157
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
F+ + + ++I +L++ DSD V +AW ALS + KE + +
Sbjct: 2158 ARFFAATDVDYSRYNQDIIRSLLISFDDSDMEVVKSAWSALSEFTKKLRKEEMEALV--- 2214
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQ 2236
+ST + + G + GF LPK + +LPIFLQ
Sbjct: 2215 ---VSTRQTLLQVGVAGNNL--KGFELPKGVSAILPIFLQ 2249
|
|
| POMBASE|SPAC18G6.05c SPAC18G6.05c "translation elongation regulator Gcn1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1928 (683.7 bits), Expect = 9.9e-214, Sum P(4) = 9.9e-214
Identities = 414/1058 (39%), Positives = 662/1058 (62%)
Query: 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALAD-----TNAD--VRGRMLNAG 1240
D G + R+ +A++ + L + L + FL++ + A+ T+A V +ML AG
Sbjct: 1204 DLGRIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSKMLEAG 1263
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ I + G V L +FE LN + + D +RE V+ G +A+HL +DP++
Sbjct: 1264 KLAIFQSGAHQVEALMELFEQKLNVDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAV 1323
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
V+D LL VL+TPSE+VQ AV+ CL PL++ ++ L ++LM S +++GAA+
Sbjct: 1324 VMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSLADQKGAAY 1383
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG+GI + + + I +L E +++R +A R+ AL A E LG FEPY+
Sbjct: 1384 GLAGLVKGYGIKAFQDFNILDSLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPD 1443
Query: 1421 MLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LPLLL +F D +MSQLSA GVKL+LP+LL GL + WR+K++SV+
Sbjct: 1444 LLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVE 1503
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
+LG M+Y AP+QLS LP I+PKL+EVLTD+H +V++ +L + G VI NPEI +LVP
Sbjct: 1504 ILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQTLVP 1563
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
TLL L+D +T +L+ LL+T+FV+ +D PSLAL++PI+ GLRER+A TK+++A+I
Sbjct: 1564 TLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKRQSAKIF 1623
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
G M SL TEP+++ Y+ L+P +++VL+DP+P+ R+ AA+A+GSLI +GE+ FP L+
Sbjct: 1624 GLMASL-TEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEKLGEKKFPTLIP 1682
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720
L + L+S+ S V+R GAAQGLSE+LA LG E +LP+I++N S +R+ +++L
Sbjct: 1683 ELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNTSSPVPHIRESFISLL 1742
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAV 1780
YLP + G +FQ YL + +P IL GLAD++E V+ A+L A ++V +YAT S+ LLLP +
Sbjct: 1743 IYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPEL 1802
Query: 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840
E G+F++ WRIR SSV+L+GDL+FK+AG + KAL E ++EG ++ +A+++++G++
Sbjct: 1803 EKGLFDNAWRIRLSSVQLVGDLVFKLAGINRKALQED-EEEEGTHSDVSRKALLDIIGQE 1861
Query: 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXE 1900
+ + +L+ LY+VR D++ VR A+ +WK IV NTP+T++EI+P L + ++ +
Sbjct: 1862 RHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVSNLNSSSND 1921
Query: 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
RR + ++LG+L++K G VLP ++P+L +GL+ ++ R GVCI L E++ SA QL
Sbjct: 1922 RRTMCVKSLGDLLKKAGFDVLPQLLPVLKQGLESANSGDRIGVCIALEELINSATPEQLE 1981
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
+ D+ + +R AL D LEVRE+A AF +L G +A+D+++P LL LE + S+
Sbjct: 1982 IYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQ 2041
Query: 2021 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 2080
AL L++I+S R++ + P ++P L+ P+SAFNA AL +LA+VAG LN L +IL AL+
Sbjct: 2042 ALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALSSLAQVAGVTLNKRLPSILNALM 2101
Query: 2081 -SAMGDDDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRR--SSAYLIG 2137
S++ D+ +L A + V L + +++ +R ++ +++
Sbjct: 2102 ESSLASTGDDLVAL-NGAIDKVNLSVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHML- 2159
Query: 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197
F++N KL + + I L D V AA A + +V+++ K+ S + +
Sbjct: 2160 VFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSI-- 2217
Query: 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235
A + RD +G + +P F + + + +LPIFL
Sbjct: 2218 -AYHSLRDVG---SQG--VNLPAFEVAQGVNSILPIFL 2249
|
|
| UNIPROTKB|F1RJK5 GCN1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2042 (723.9 bits), Expect = 3.0e-211, P = 3.0e-211
Identities = 420/897 (46%), Positives = 587/897 (65%)
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+L
Sbjct: 2 ERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKL 61
Query: 1414 FEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYV+ +LP LL+ F D +MS LSA GVKLVLPSLL LE+++WR
Sbjct: 62 FEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWR 121
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NP
Sbjct: 122 TKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNP 181
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI ++ P LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+
Sbjct: 182 EILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTR 241
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE
Sbjct: 242 KMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGES 300
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS-- 1711
F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S +
Sbjct: 301 CFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPH 360
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VRDGY+ +F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T
Sbjct: 361 VRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAET 420
Query: 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831
++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +
Sbjct: 421 AIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNK 480
Query: 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891
AII LG D+RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+
Sbjct: 481 AIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLL 540
Query: 1892 XXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951
++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M
Sbjct: 541 GFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIM 600
Query: 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
S + +L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL
Sbjct: 601 KSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQ 660
Query: 2012 LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFH 2071
L+D++ S+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L H
Sbjct: 661 LDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRH 717
Query: 2072 LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIR 2129
LG ILPA++ A+ + + L + V L + D + + +R
Sbjct: 718 LGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMR 777
Query: 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189
+++A ++ + SK +++S LI L +DS + +W+AL+ + + Q
Sbjct: 778 QAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQ 837
Query: 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQVFVLYTFSP 2245
+ I+ + I ++ + + +PGFCLPK + +LP+ L+ VL T SP
Sbjct: 838 LALIEELHKEIRLIGNESKGEH------VPGFCLPKKGVTSILPV-LREGVL-TGSP 886
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q92616 | GCN1L_HUMAN | No assigned EC number | 0.3346 | 0.9618 | 0.8124 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2256 | |||
| pfam12074 | 329 | pfam12074, DUF3554, Domain of unknown function (DU | 6e-30 | |
| pfam01602 | 522 | pfam01602, Adaptin_N, Adaptin N terminal region | 1e-04 | |
| COG5181 | 975 | COG5181, HSH155, U2 snRNP spliceosome subunit [RNA | 3e-04 |
| >gnl|CDD|221409 pfam12074, DUF3554, Domain of unknown function (DUF3554) | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-30
Identities = 82/354 (23%), Positives = 132/354 (37%), Gaps = 40/354 (11%)
Query: 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKR 405
P Q+ + NAL L S+S +I LL E NE A+LSA
Sbjct: 1 PDQKALIANALSALPVF-------SVSPSIVDGLLPLLSKESNEAALNALLSAFGKHLFF 53
Query: 406 SADIIQSDLLSFFASGLKEKEA-LRRGHLRCLRVICTNTDAVLQ-VSSLLGPLIQLVKTG 463
+ + D++ GL EK+ LR+ L L N A L + L L++++K
Sbjct: 54 LTEEVPDDVVDAIKKGLAEKKPPLRKIWLLSLGEALWNNSASLPLIEDFLPKLLKILKEA 113
Query: 464 FTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPS-LVPTAMIS 517
+ + L G Y L + + K WSLV +PS L+ S
Sbjct: 114 ASNPLPAAQNGTLSGAYVLLSLTPSLSK--------KLIKFWSLVLDPKPSFLLSPKFYS 165
Query: 518 KLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHDATR 575
KLS +D + L L H + E Q + P W++RK A +
Sbjct: 166 KLSDEDLCWVLRALEALFSGHPSELAEDKIA--WGQAWIYVLLSPSLPWEVRKRALQLLK 223
Query: 576 KIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
K+++S P L+ +++ N+L K S + + + S +
Sbjct: 224 KLLSSNPGVLANSIISALWNWLEAHELG---PKESSIESTSLKFLTPVFSALSLALSEKD 280
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVS 688
A +++ ++ +HHP I W L CLR+ G + E+V
Sbjct: 281 SADISIGLEKLLV-SLLVLAHHPLIPIVS-----WIGL--CLRS-GLDPGELVR 325
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with pfam02985. Length = 329 |
| >gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-04
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-ASI 2128
HL I+ L + DDD+ + A + + ++DE V+ +V ELLK V +
Sbjct: 301 QHLDLIIFCLKT---DDDISI---RLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEF 354
Query: 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
+ IG + +A I L+ LLS + S V E + ++ P
Sbjct: 355 KIKLVKAIGRLAEKF----PTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYP 407
|
This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522 |
| >gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-04
Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 40/233 (17%)
Query: 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDP 1935
+++P+LM S ER V + L+ L + +P I+ ++ L D
Sbjct: 205 FNKVLPMLM-----SRELEDQERHLVVK-LIDRLLYGLDDLKVPYVHKILVVVGPLLIDE 258
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
RR C+G E++ + L F + ++R + VR G A + +
Sbjct: 259 DLKRR---CMG-REIILNLVYRCGLGFS---VSSMRPDITSKDEYVRNVTGRAVGVVADA 311
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH------ILPKLV---H 2046
G++ + + L + + + T + +QI + + L H + KL+
Sbjct: 312 LGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS 371
Query: 2047 LPLSAFNAHALGALAEVAGP---------------GLNFHLGTILPALLSAMG 2084
+ A+AL LAE+ GP G + H G L + L AMG
Sbjct: 372 RFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMG 424
|
Length = 975 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2256 | |||
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.97 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.97 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.95 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.93 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.92 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.89 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.89 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.89 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.88 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.88 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.88 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.87 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.86 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.85 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.81 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.73 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.61 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.45 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.43 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.39 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.35 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.34 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.33 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.32 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.28 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.27 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.2 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.19 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.19 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.13 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 99.12 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.98 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.96 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.95 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.91 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.8 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.77 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.74 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.73 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.73 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.7 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.68 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.65 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 98.64 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.63 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.62 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.61 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.6 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 98.58 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.54 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.51 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.48 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.47 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 98.46 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.4 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.39 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.38 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.37 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.32 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.32 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.31 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.3 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.29 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.28 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.26 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.26 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.25 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.19 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.17 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.01 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.98 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.94 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.9 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.87 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.85 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.84 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.84 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.83 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.82 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.81 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.81 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 97.76 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.75 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.72 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.71 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 97.55 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 97.5 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.49 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.43 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.38 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.37 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.29 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.26 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.2 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.19 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.17 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.15 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 97.08 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.0 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.97 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.97 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.97 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.97 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 96.95 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.93 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.91 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.89 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.87 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.8 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.79 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.76 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.62 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.6 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.59 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 96.56 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 96.56 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 96.55 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.49 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.41 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.31 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 96.29 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 96.28 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.21 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.13 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.04 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.9 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 95.89 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.81 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 95.81 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 95.73 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.69 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 95.56 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 95.54 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.45 | |
| COG5234 | 993 | CIN1 Beta-tubulin folding cofactor D [Posttranslat | 95.37 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 95.25 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.22 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.21 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.17 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 95.15 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.04 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.98 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 94.95 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 94.84 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 94.8 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 94.65 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.62 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 94.52 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 94.42 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 94.38 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.34 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 94.28 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.22 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 94.01 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 93.97 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 93.81 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 93.75 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 93.75 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 93.72 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 93.3 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 93.26 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 93.13 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 93.11 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 92.95 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 92.82 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 92.79 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 92.78 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 92.72 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 92.59 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 92.51 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 92.33 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 92.3 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 92.09 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 92.03 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 92.01 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 91.75 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 91.68 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.58 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 91.43 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 91.4 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 91.18 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 91.17 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 91.16 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 90.5 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 90.42 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 90.36 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 90.14 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 90.08 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 89.81 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 89.78 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 89.7 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 89.42 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 89.38 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 89.36 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 88.53 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 88.47 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 87.87 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 87.14 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 86.62 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 86.31 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 86.15 | |
| KOG2213 | 460 | consensus Apoptosis inhibitor 5/fibroblast growth | 85.58 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 84.79 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 84.12 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 83.38 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 83.19 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 82.66 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 82.6 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 82.19 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 81.34 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 80.25 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 80.22 |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=521.09 Aligned_cols=562 Identities=50% Similarity=0.759 Sum_probs=525.5
Q ss_pred HHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHH
Q 000098 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2256)
Q Consensus 1201 L~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~a 1280 (2256)
++....++...+....+.|++..| .|+.++||..|++++..+++.+|.+.+..++|.+++.|++. . ++.+|+++
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-~----~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-H----NDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-h----hHHHhhhh
Confidence 344444554444455577877777 99999999999999999999999999999999999999873 2 56899999
Q ss_pred HHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000098 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2256)
Q Consensus 1281 v~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~ 1360 (2256)
+.+.|.++.|+...||+...+++.++..+.+|++.+|++++.|+++++..........+..++..+.+..+...|+++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887765555566666666666778999999999
Q ss_pred HHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHH
Q 000098 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2256)
Q Consensus 1361 ~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa 1440 (2256)
++++++++.|...+.++.++..+...+.++++...|+++..++...+..+|..++||+..++|.++.+++|....||+++
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2256)
Q Consensus 1441 ~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~ 1520 (2256)
..+.+.++..++.++++.++|.++..+.+..|+++.++++.+|.|++++|++++.++|+++|.+.+.|.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2256)
Q Consensus 1521 ~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l 1600 (2256)
.++..++.++.|++|+.++|.|++++.||+.++.+|++.|+.++|++++++|+++.++|++.+++.+++..++++++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000098 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2256)
Q Consensus 1601 ~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~ 1680 (2256)
+|||.++.+++++.||++.|+|.+...+.|+.|++|..+.++++.+.+.+|..++++.+|++++.+.++.....|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999988999999999999999999999999999999999999999999999899999999999999888889999999
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000098 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2256)
Q Consensus 1681 ~L~~i~~~~g~~~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al 1758 (2256)
.+++++...|.++...+++.++...... ++.+|.+.+++|..++..+|.+|.+|+.++++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887664 67799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 000098 1759 GAGHVLVEHY 1768 (2256)
Q Consensus 1759 ~al~~iv~~~ 1768 (2256)
++...++.++
T Consensus 557 ~~~~~~~~~~ 566 (569)
T KOG1242|consen 557 EAGEVEVLNY 566 (569)
T ss_pred hhhhhhhccc
Confidence 8877765443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-47 Score=482.69 Aligned_cols=956 Identities=17% Similarity=0.204 Sum_probs=645.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHH--------HHHHhhcCCCC
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYDF 1128 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~--------~~~w~~~~~~~ 1128 (2256)
..+.+|+++++|||+.+|+.|+++|++.+... . .......+..+.+++++|++| ...|..++.+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-----~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-----P--LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-----c--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46889999999999999999999999887441 1 334445567777888877764 44888888888
Q ss_pred CCCh-HhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhh
Q 000098 1129 GTDY-SGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2256)
Q Consensus 1129 ~~~~-~~ll~~l-~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~ 1205 (2256)
++++ +.+|..+ .++...||++.|+++|++++. .|+.|+++++.|+++.. +++...|+.+.+.|..+.
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 8888 8888855 567899999999999999975 66789999999999831 345579999999999999
Q ss_pred hhhccCChh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhc--cc---cccchHHHHHHHhhccCCChhhhhhhh
Q 000098 1206 DVLRTKDLP---VIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNKKASDEEKYDLVR 1277 (2256)
Q Consensus 1206 ~~~~~~~~~---~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g--~~---~~~~Ll~~l~~~L~~~~~~~~~~~~vr 1277 (2256)
..+++...+ .+...+ .++++|++..||..++.+..+++.... +. .+..++|.+...+.....+.+. ..-
T Consensus 147 ~~~~~~~~~~~~~l~~lf-~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~--~~a 223 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLF-SQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD--DAA 223 (1075)
T ss_pred hhhccccchhHHHHHHHH-HHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch--HHH
Confidence 999886554 344443 689999887799999999888876553 11 2334444444433321111111 112
Q ss_pred hHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcC-CCHHHHH
Q 000098 1278 EGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS-DKYGERR 1356 (2256)
Q Consensus 1278 ~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~-~~~~vR~ 1356 (2256)
..++++|.++++..+ +.+. +.+..++...+....+. -+..+|.
T Consensus 224 ~~~l~~l~El~e~~p---k~l~---------------------------------~~l~~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 224 KSALEALIELLESEP---KLLR---------------------------------PHLSQIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HHHHHHHHHHHhhch---HHHH---------------------------------HHHHHHHHHHHHHhhcccccHHHHH
Confidence 233333333332210 0011 11222233333322222 2567777
Q ss_pred HHHHHHHHHHhhhCcccchh-----hcHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHH
Q 000098 1357 GAAFGLAGVVKGFGISSLKK-----YGIAATLREGLADR---NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2256)
Q Consensus 1357 ~Aa~~L~~lv~~~g~~~~~~-----~~il~~L~~~l~~~---~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~ 1428 (2256)
.|...|..+++.. +...+. ..+++.+...+.+. ++|..- .-
T Consensus 268 ~ALe~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~------------------------------d~ 316 (1075)
T KOG2171|consen 268 LALEFLVSLSEYA-PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE------------------------------DD 316 (1075)
T ss_pred HHHHHHHHHHHhh-HHHhhhchhhhccHHHHHHHhcCCcccchhhccc------------------------------cc
Confidence 7777777666652 111110 02333333332211 011000 00
Q ss_pred cCCC-cHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000098 1429 FSDQ-VVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2256)
Q Consensus 1429 l~D~-~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~ 1506 (2256)
..|+ ...-...|.+++++++.++++..+ ..+++.+-.++.+.+|+.|++++.+|+.+++++++.+...+++|++.+++
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~ 396 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLN 396 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 1111 123455788999999999998775 78888888999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2256)
+++|+||+||.+||.++++++..+.. +++. .+...+.|.+...+.
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p-~iqk----------------------------------~~~e~l~~aL~~~ld 441 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQP-EIQK----------------------------------KHHERLPPALIALLD 441 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcH-HHHH----------------------------------HHHHhccHHHHHHhc
Confidence 99999999999999999999987753 2210 011223333344333
Q ss_pred C-CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhH-HHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHH
Q 000098 1587 E-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSW 1661 (2256)
Q Consensus 1587 d-~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~-~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~ 1661 (2256)
+ .++++..+|+.++.++.+- ...+.+.||++.+|. .+..+.+.+.+.+|+.+..+|+.++.+.++. |++.+||.
T Consensus 442 ~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~ 520 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPL 520 (1075)
T ss_pred ccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3 3567888888888888874 355778999999999 6666677889999999999999999999876 78899999
Q ss_pred HHHHhhcCCC---HHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHhHhhhChhH
Q 000098 1662 LLDALKSDNS---NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-------SHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2256)
Q Consensus 1662 Ll~~L~~~~~---~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l-------~~~~~~vR~~al~~l~~La~~~g~~f 1731 (2256)
|.+.|++..+ ...|.....+++.+..+.|++.|.+.-..+++.+ .+.+...|...+..|+.+|+.+|++|
T Consensus 521 L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F 600 (1075)
T KOG2171|consen 521 LKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDF 600 (1075)
T ss_pred HHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhh
Confidence 9999987442 2345556678999999999987755544444432 33477899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCc
Q 000098 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2256)
Q Consensus 1732 ~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~ 1811 (2256)
.||++.++|+++....-.. ++- .++++ ...+.-.++.|....
T Consensus 601 ~p~L~~Vmppl~~ta~~~p-~~~------------~~d~~-------d~e~~~~~~~~e~~~------------------ 642 (1075)
T KOG2171|consen 601 APFLPVVMPPLLKTARLDP-DVA------------LSDEE-------DEEEEQDLDGWEVVE------------------ 642 (1075)
T ss_pred HhHHHHHhHHHHHhhccCC-ccc------------CcCch-------hhhhccccccchhhc------------------
Confidence 9999999999998765221 100 00000 000000112222100
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHH-H
Q 000098 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT-L 1890 (2256)
Q Consensus 1812 ~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~-L 1890 (2256)
..+++.. | .......-+..|...++.++..+...+.+|+...+.. +
T Consensus 643 ------~~~~e~~-------------~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v 689 (1075)
T KOG2171|consen 643 ------LGDKENI-------------G--------------IRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMV 689 (1075)
T ss_pred ------cCCceee-------------e--------------eeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0000000 0 0111223467788888888888888888888887772 3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhh------Ccc----chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhh
Q 000098 1891 ISSLASSSSERRQVAGRALGELVRKL------GER----VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQL 1959 (2256)
Q Consensus 1891 ~~~L~~~~~~~R~~A~~aL~~lv~~~------~~~----~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l 1959 (2256)
....-..+..+|..|+.++..+++.. ++. ....+.|.+...+.++ ++.+-..+..++++.+..+|...+
T Consensus 690 ~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L 769 (1075)
T KOG2171|consen 690 PLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCL 769 (1075)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccC
Confidence 23334567899999999999998743 222 2456677777777644 678888899999999999996544
Q ss_pred -HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCch-HHHHHHHHHHHhhhcccch
Q 000098 1960 -LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVL 2037 (2256)
Q Consensus 1960 -~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-~~al~~L~~il~~~~~~~l 2037 (2256)
.++...+...+...+.+...+.+..- +.+ .+ ++++.. +..+. .....++
T Consensus 770 ~~~~~~~~~~~~~~~~l~~~~~~~~r~-----------~~~-~e----------ed~d~~eee~~~-------e~d~~ll 820 (1075)
T KOG2171|consen 770 NEDGLEALLGGLLAQLLQHFKRMQDRQ-----------EED-DE----------EDDDIEEEEDLD-------EQDAYLL 820 (1075)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhh-hh----------hhhhhHHHHHHh-------hhhHHHH
Confidence 23444444444433322211111100 000 00 000000 00000 0000111
Q ss_pred hhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch---hcHHHHH
Q 000098 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLV 2114 (2256)
Q Consensus 2038 p~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~---~~~~~ll 2114 (2256)
......++++++..|..|.|++..++|.++..+.++....|..+.++++++++.+++ .+.+.++
T Consensus 821 -------------~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~ 887 (1075)
T KOG2171|consen 821 -------------DAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFL 887 (1075)
T ss_pred -------------HHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 123456788889999999999999999999999887666699999999999998865 5678899
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhccCCCCc
Q 000098 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD------STTVAAAWEALSRVVASVPKEV 2188 (2256)
Q Consensus 2115 ~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d------~~Vr~~A~~aL~~l~~~l~~e~ 2188 (2256)
|.++..+.|.+|++|++|.|.+|.++++.+.+|.+.+...++.|...+..++ ...++||.+|++++++..+...
T Consensus 888 p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i 967 (1075)
T KOG2171|consen 888 PLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRI 967 (1075)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccC
Confidence 9999999999999999999999999999999999999999999998887654 3588999999999998776532
Q ss_pred -hhchHHHHHHHHhhhhhhhhhhccCCc-c-----ccCCcCCC--CcchhhHHHHHHHhhccCCCCCCC
Q 000098 2189 -QPSYIKVIRDAISTSRDKERRKKKGGP-I-----LIPGFCLP--KALQPLLPIFLQVFVLYTFSPSSL 2248 (2256)
Q Consensus 2189 -l~~lv~~l~~~l~~~~d~~r~~~~g~~-~-----~l~g~~lp--~~i~~~Lp~~~~~l~~~~~~~~~~ 2248 (2256)
.+..++.+...|....|.+.+.....- . .=|..+-| ..+..++.++.++++++.-..++-
T Consensus 968 ~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~~~~ 1036 (1075)
T KOG2171|consen 968 PVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEPRST 1036 (1075)
T ss_pred cHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCccch
Confidence 667777777777666665443211110 0 01222223 367788888999998886666554
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=363.17 Aligned_cols=645 Identities=17% Similarity=0.227 Sum_probs=458.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHH-------------------HHHHH
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKS-------------------VAEAA 1117 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~-------------------~~~~~ 1117 (2256)
+++.++|.+++|||.++|+.|+..|.+.. +.||+.++..+.+++ +....... ...-.
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl-~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~ 76 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVL-ANDNSSDVARMAAGLQLKNSLTAKDPERKQQY 76 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHH-hccCCcHHHHHHHhHHHhhhhccCCHHHHHHH
Confidence 35678888899999999999999999875 457777777777765 33333333 33346
Q ss_pred HHHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHH-----------------
Q 000098 1118 EDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYI----------------- 1177 (2256)
Q Consensus 1118 ~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~-~~~~~~l~~L~~~~~----------------- 1177 (2256)
..+|..+..+.++++ ..++..|+++.+..+..|+|++|.++. +-| ..|++++..|.....
T Consensus 77 ~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGy 156 (859)
T KOG1241|consen 77 QQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGY 156 (859)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 779998888888888 888899999999999999999999974 233 455555555544311
Q ss_pred --hhcCCC----------------CCCCCCCcchhHHHHHHHHHhhhhhc----cC-ChhHhHHHHHHhhcCCCCHHHHH
Q 000098 1178 --RDIGLG----------------GDNVDAGWLGRQGIALALHSAADVLR----TK-DLPVIMTFLISRALADTNADVRG 1234 (2256)
Q Consensus 1178 --~~~~~~----------------~~~~~~~~~~R~~~~~aL~~l~~~~~----~~-~~~~l~~~lv~~~l~D~~~~VR~ 1234 (2256)
+.+.|+ ....+++-.+|.++..||.+..++.. ++ ..+.+|+.+ +++.+.++.+||.
T Consensus 157 ice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvv-cEatq~~d~~i~~ 235 (859)
T KOG1241|consen 157 ICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVV-CEATQSPDEEIQV 235 (859)
T ss_pred HHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeee-eecccCCcHHHHH
Confidence 111111 11234566899999999999888644 33 245577765 7899999999999
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHhhc-c-CCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCC
Q 000098 1235 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-K-ASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312 (2256)
Q Consensus 1235 ~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~-~-~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~ 1312 (2256)
+++.|...++..+ ++.+-+++++.|.. + .....++|.|.-.++++|.++|+.- +. +....-+.
T Consensus 236 aa~~ClvkIm~Ly----Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE------iD-~~~e~~e~---- 300 (859)
T KOG1241|consen 236 AAFQCLVKIMSLY----YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE------ID-LAIEYGEA---- 300 (859)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH------HH-HHHHHHHH----
Confidence 9999999999876 55555665553321 0 1122345689999999999999641 11 11111111
Q ss_pred CHHHHHHHHHhhHHhHHhh-cCchHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHH
Q 000098 1313 SEAVQRAVSSCLSPLMQSM-QDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385 (2256)
Q Consensus 1313 ~~~Vq~~~~~~L~~lv~~~-~~~~~~~l~~Ll~~L~~~------~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~ 1385 (2256)
+..-++|-...+ ....+.++|.|++.|.++ ++|..-++|..||..+++..|++.+. .++|++.+
T Consensus 301 -------~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee 371 (859)
T KOG1241|consen 301 -------VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEE 371 (859)
T ss_pred -------hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHH
Confidence 111111111111 234567888888888862 36999999999999999999999987 89999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHH
Q 000098 1386 GLADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLL 1464 (2256)
Q Consensus 1386 ~l~~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll 1464 (2256)
.++++ ||+.|+++.++||++.++.. ..+.|++.+.+|.++..+.|+...||+++++++++++..++....
T Consensus 372 ~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-------- 442 (859)
T KOG1241|consen 372 NIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-------- 442 (859)
T ss_pred hcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc--------
Confidence 99988 89999999999999999976 568999999999999999999999999999999999876653211
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC------------c
Q 000098 1465 KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK------------N 1532 (2256)
Q Consensus 1465 ~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~------------~ 1532 (2256)
+ ..+++.+++.+.+.|+| +|+|..++||++..+++.+. +
T Consensus 443 -------------------------n---~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t 493 (859)
T KOG1241|consen 443 -------------------------N---QELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT 493 (859)
T ss_pred -------------------------c---HhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 0 12334555666666666 36666666666666664431 1
Q ss_pred hhHHhHHHHHHhhhCCCC---hhHH-HHHHHHHh-cccccCCChhhHhhHHHHHHH----hhcC--CCH-------HHHH
Q 000098 1533 PEIASLVPTLLMGLTDPN---DHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVHR----GLRE--RSA-------ETKK 1594 (2256)
Q Consensus 1533 ~~i~~lv~~Ll~~l~d~~---~~vr-~al~~L~~-~~~~~~~~~~~l~~i~p~L~~----~L~d--~~~-------~vR~ 1594 (2256)
|.++.++..|++....++ ...| .++++|.. +.+....-.+....+.+.+.. .+.+ .+. +++.
T Consensus 494 ~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 494 PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQS 573 (859)
T ss_pred hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence 234555555555544332 2334 24444443 222222222223333333222 1110 111 3333
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCC
Q 000098 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2256)
Q Consensus 1595 ~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~ 1670 (2256)
.-|..++.+...++ .++.++.+.+|..++..++. .+..+.+.|+-++++++..+|+. |++.+.|+|...|++..
T Consensus 574 ~Lc~~Lq~i~rk~~--~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~ 651 (859)
T KOG1241|consen 574 LLCNTLQSIIRKVG--SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ 651 (859)
T ss_pred HHHHHHHHHHHHcc--ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch
Confidence 44455555554333 37788999999999999987 56678999999999999999976 78899999999998877
Q ss_pred CHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHh
Q 000098 1671 SNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~ 1745 (2256)
++.+...+..-+++++++++.+ +.+.+|..+++.++++ +..||...+++||.++.+.|.+|.+|++.++|.+.+.
T Consensus 652 e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 652 EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7766666666689999999987 6689999999999987 7889999999999999999999999999999998776
Q ss_pred cC---CC--------CHHHHHHHHHHHHHHHHHhhc
Q 000098 1746 LA---DE--------NESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1746 L~---d~--------~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
-+ |+ ...+|++++++...|++.++.
T Consensus 732 s~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~ 767 (859)
T KOG1241|consen 732 SSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKT 767 (859)
T ss_pred HhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 52 22 135899999999999888774
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=396.29 Aligned_cols=318 Identities=25% Similarity=0.348 Sum_probs=254.3
Q ss_pred hHHHhHHHHHHHhhhcCCcchhhhhhHHHHHHHHHhhHhhcCcHHHHHHHHHHHHHHHHhccCccchHHHHHHHhhhchh
Q 000098 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2256)
Q Consensus 346 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~al~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2256)
||||+.+++||..++. . .+|.+|+++++|+++||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred hH-HHHHHHHHHHHHHh---hhhhhhhhhhhHHHHHHHHHHHhhccccc-----hhHHHHHHHHHHHhhhhhhHHHhhhH
Q 000098 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2256)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~a~~~l~~~~~~~~~~~~~~~~ 496 (2256)
++ +||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++... ...+.+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~--~~~~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSW--KLDKIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccc--cchhhhh--hh
Confidence 87 99999999999999 55677889999999999999999999665 4455554441111 1112222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000098 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2256)
Q Consensus 497 ~~~~~~~~~~k~~f-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vr~~a~~ 572 (2256)
...|.++.++||+| +++|+|+| .++||.+|+++++++++..+..+..++. ..+|+++|+|++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47888888999997 67999999 6688889999999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-cHHHHHHHHHHHHhhhhhhhhccCCCCCCcccCCCCCCCCchHHHHHHHHhhhhccccC-------Cc
Q 000098 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALAR-------GP 644 (2256)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~ 644 (2256)
.+++++.++|+ ++..++.+||+|+.... ..++++. ...........+.+++ |..+..... .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~-------~~~~~s~--~~~~~~~~~~~v~~ai-~~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSE-------TGDKESS--AENSSDKNLSPVLSAI-CLAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcc-------ccccccc--cccccccccccchHHH-HhhhHhhhccccchhHHH
Confidence 99999999999 69999999999998663 2222220 1111112233355555 333322111 36
Q ss_pred chhhhHhhhcCCCccccccccccchhHHHHhHHhhCCChHHHHhhcHH
Q 000098 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2256)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2256)
++++++|++||||+|+. +++|++|| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 78999999999999984 47999995 33 99999999999963
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=337.58 Aligned_cols=890 Identities=17% Similarity=0.211 Sum_probs=610.6
Q ss_pred ccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHH
Q 000098 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La 1288 (2256)
+++....+++.++ +.+.|.|++|+..|+.|..-++..-+.++++.+...+..-+- .+.+ ..|..+-..|....
T Consensus 41 d~dSe~kvv~~lL-klL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~---s~ke---q~rdissi~Lktvi 113 (1233)
T KOG1824|consen 41 DDDSERKVVKMLL-KLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNML---SGKE---QLRDISSIGLKTVI 113 (1233)
T ss_pred cccchhHHHHHHH-HHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhc---cchh---hhccHHHHHHHHHH
Confidence 3444566777774 799999999999999998888877666666655544433221 1112 35665666665555
Q ss_pred hhhccCC------cchHHHHHHHHHHcCC--CCHHHHHHHHHhhHHhHHhhcCch----HHHHHHHHHHHhcCCCHHHHH
Q 000098 1289 KHLAKDD------PKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERR 1356 (2256)
Q Consensus 1289 ~~l~~~~------~~i~~il~~Ll~~L~~--~~~~Vq~~~~~~L~~lv~~~~~~~----~~~l~~Ll~~L~~~~~~~vR~ 1356 (2256)
.++++.. .-++.+.+++..++.. +...++-.+.+.+......++.-. ..++..++.++.. ....+|+
T Consensus 114 ~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s-~R~aVrK 192 (1233)
T KOG1824|consen 114 ANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQS-PRLAVRK 192 (1233)
T ss_pred hcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccC-hHHHHHH
Confidence 5555421 1134555555555432 233355445555555555554322 3444455555543 3578999
Q ss_pred HHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc---CCCc
Q 000098 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---SDQV 1433 (2256)
Q Consensus 1357 ~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l---~D~~ 1433 (2256)
.|.++|+.++...+..... .++..+.+.+.+......-...+.+++.++...|..|..|+..++|.+.+.. +..+
T Consensus 193 kai~~l~~la~~~~~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~d 270 (1233)
T KOG1824|consen 193 KAITALGHLASSCNRDLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDD 270 (1233)
T ss_pred HHHHHHHHHHHhcCHHHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCc
Confidence 9999999999887765554 6777777777766666666678999999999999999999999999999988 6778
Q ss_pred HHHHHHHHHHHHHHHhhhhHhh---HHhHHHHHHHhc----------------------------------cCCChhHHH
Q 000098 1434 VAVREAAECAARAMMSQLSAQG---VKLVLPSLLKGL----------------------------------EDKAWRTKQ 1476 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~---v~~ilp~Ll~~L----------------------------------~~~~w~~R~ 1476 (2256)
++.|+.+.++++.+....+.+- ++.++..+++++ +|-+|.+|+
T Consensus 271 DELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRR 350 (1233)
T KOG1824|consen 271 DELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHH
Confidence 9999999999999998887643 245555555543 012599999
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH
Q 000098 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a 1556 (2256)
+|+.++..+.....+.+...+..+-|.++..+++.+..|+.....++..+....+.. . ..+.|++. .+
T Consensus 351 aAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~-~--------~~~~d~d~-~e-- 418 (1233)
T KOG1824|consen 351 AAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPV-I--------EVLADNDA-ME-- 418 (1233)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC-c--------ccccCchh-hh--
Confidence 999999999999999888888999999999999999999999999998888765531 1 11112211 11
Q ss_pred HHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCH--H
Q 000098 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP--E 1634 (2256)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~--~ 1634 (2256)
. ..+.+....-......++..+.+.+++++..+|..+...+..+... -|..+.+|++.++|++...++|.+. .
T Consensus 419 --~-~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~--lp~~l~~~~~slvpgI~~~l~DkSsss~ 493 (1233)
T KOG1824|consen 419 --Q-GGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINV--LPGALAQHIPSLVPGIIYSLNDKSSSSN 493 (1233)
T ss_pred --c-cCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHh--CcchhhhcccccchhhhhhcCCccchHH
Confidence 0 1111111111224556778888888888888888888888777763 4567889999999999999998654 3
Q ss_pred HHHHHHHHHHHHHHhhCcCc----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc----------HhHHHHHHHH
Q 000098 1635 VRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----------TVYFEHILPD 1700 (2256)
Q Consensus 1635 VR~~a~~aL~~L~~~~g~~~----~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g----------~~~l~~ll~~ 1700 (2256)
.+..+...+..+....+++. .+.+.|.+.....+ +-+.+-..|......+++.+. ..++..+...
T Consensus 494 ~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d-~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~ 572 (1233)
T KOG1824|consen 494 LKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGD-PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDC 572 (1233)
T ss_pred HHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcC-chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHH
Confidence 44444444433333334443 33455555544443 555555555554555554432 1256666666
Q ss_pred HHHhcc--CCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc----cchh
Q 000098 1701 IIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT----TSLP 1774 (2256)
Q Consensus 1701 ll~~l~--~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~----~~~~ 1774 (2256)
.++.+. +.+.+||+.++.|+|.+...+|+.....++.++|.+++.+..+ ..|..|.+|+..|+..--. ....
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l~ 650 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPVLT 650 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhhHH
Confidence 666654 5689999999999999999999988899999999999999864 5799999999888643211 1234
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1775 ~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
.++|.+...+...+...|..+..++..++...++.. +.+..+-++..+-...+
T Consensus 651 ~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~---------------------------~~~~~e~vL~el~~Lis 703 (1233)
T KOG1824|consen 651 EILPELASFLRKNQRALRLATLTALDKLVKNYSDSI---------------------------PAELLEAVLVELPPLIS 703 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------------cHHHHHHHHHHhhhhhh
Confidence 477777777766666778888888877764432211 11112223333434456
Q ss_pred CCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCC------------------------------------
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS------------------------------------ 1898 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~------------------------------------ 1898 (2256)
+++..+-+.|+.+++.+..+.|..+..+...+++.++..+.++-
T Consensus 704 esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~P 783 (1233)
T KOG1824|consen 704 ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAP 783 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCC
Confidence 66677777788888877777665555444444444444444321
Q ss_pred -HH---------HHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1899 -SE---------RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1899 -~~---------~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
++ .-...+.|.+.++..+++.. ..+...+.+-+..+ +...|.-+...+|++....+.. +...+
T Consensus 784 V~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s-~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~ 858 (1233)
T KOG1824|consen 784 VYEQVTDGLHKQAYYSIAKCVAALTCACPQKS-KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNEL 858 (1233)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhccccc-hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhh
Confidence 00 01123445555555555322 11222222223323 3445566667777776544322 23445
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHH-HHHHHHHHHhhhcccchhhhhhhhh
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT-ALDGLKQILSVRTTAVLPHILPKLV 2045 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~-al~~L~~il~~~~~~~lp~li~~L~ 2045 (2256)
-..+.+++..++++|+.+|+.|+|.+.- ...+.++|.+++.++.+...++ -+..+++++..
T Consensus 859 ~~~iieaf~sp~edvksAAs~ALGsl~v----gnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~-------------- 920 (1233)
T KOG1824|consen 859 KDTIIEAFNSPSEDVKSAASYALGSLAV----GNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVS-------------- 920 (1233)
T ss_pred HHHHHHHcCCChHHHHHHHHHHhhhhhc----CchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHH--------------
Confidence 5677889999999999999999998763 3467789999998887654443 33455554421
Q ss_pred cCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCC
Q 000098 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125 (2256)
Q Consensus 2046 ~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~ 2125 (2256)
.--..+.++.+.||..|++.+++..+..|...++|+|.++.. ....++|.|-..+.++.
T Consensus 921 -----------------~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~----epesLlpkL~~~~~S~a 979 (1233)
T KOG1824|consen 921 -----------------ASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLI----EPESLLPKLKLLLRSEA 979 (1233)
T ss_pred -----------------hccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC----ChHHHHHHHHHHhcCCC
Confidence 111256789999999999999999999999999999999984 35789999999999999
Q ss_pred hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCC---CCchhchHHHHHHH
Q 000098 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP---KEVQPSYIKVIRDA 2199 (2256)
Q Consensus 2126 ~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~---~e~l~~lv~~l~~~ 2199 (2256)
+..|..++.++......-+..+.++..+.+..++..+.|+|..||+.|..+++..++.-| +|.++.++|.++..
T Consensus 980 ~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 980 SNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred cchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 999999999998888777788999999999999999999999999999999999998766 47788888887643
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=335.42 Aligned_cols=796 Identities=19% Similarity=0.229 Sum_probs=552.2
Q ss_pred hhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcC-CCCHHHHHHHHHhhHHhHHhh----cCch-HHHHHHHHHHHhc
Q 000098 1275 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQSM----QDEA-PTLVSRLLDQLMK 1348 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~-~~~~~Vq~~~~~~L~~lv~~~----~~~~-~~~l~~Ll~~L~~ 1348 (2256)
.+|..|-+.|.++... ++ +++.|...+. .+++.+|..++--+..++..+ ..+. ..+-..++..+.+
T Consensus 19 ~vr~~Ae~~l~~~~~~-----~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~ 90 (1075)
T KOG2171|consen 19 EVRRQAEEALETLAKT-----EP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS 90 (1075)
T ss_pred hHHHHHHHHHHHhhcc-----cc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 5688888888776643 11 4455554443 456788876665555444433 2233 3455567888888
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHH
Q 000098 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2256)
Q Consensus 1349 ~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~ 1428 (2256)
+....+|+.-+..++.+++...++ +++++++++.+...+. ++..||.|+..|..+.+.+|..+.||+..+++.+.++
T Consensus 91 E~~~~vr~k~~dviAeia~~~l~e--~WPell~~L~q~~~S~-~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~ 167 (1075)
T KOG2171|consen 91 ETEPSVRHKLADVIAEIARNDLPE--KWPELLQFLFQSTKSP-NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQT 167 (1075)
T ss_pred ccchHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHhcCC-CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHh
Confidence 888999999999999999999888 4569999999999887 7899999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhh--Hhh---HHhHHHHHHHhcc----CCChhHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000098 1429 FSDQVVAVREAAECAARAMMSQLS--AQG---VKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2256)
Q Consensus 1429 l~D~~~~VR~aa~~al~~l~~~l~--~~~---v~~ilp~Ll~~L~----~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2256)
++|++..||-++.+|+..++..++ +.. +..++|.++.-+. +++-..-..++++|..+++..|+.+.+++..
T Consensus 168 ~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ 247 (1075)
T KOG2171|consen 168 MTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ 247 (1075)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 999998899999999999998875 222 3567777765553 4555566788999999999999999999999
Q ss_pred HHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcC------chhHHhHHHHHHhhhCCCC--------------h---hH-
Q 000098 1500 IVPKLTEVLTD--THPKVQSAGQTALQQVGSVIK------NPEIASLVPTLLMGLTDPN--------------D---HT- 1553 (2256)
Q Consensus 1500 Ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~~i~------~~~i~~lv~~Ll~~l~d~~--------------~---~v- 1553 (2256)
|+....+..++ -+..+|..|.+.|..+++... .++.+.+++.++..+.+-. + ..
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 99998888765 468899999999999888722 1355788888888775321 0 01
Q ss_pred --HHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCC
Q 000098 1554 --KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631 (2256)
Q Consensus 1554 --r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~ 1631 (2256)
..+++.+.. +-.....++.+++.+...+.+.+|.-|.++..+++.+++ +.++.+.+.++.+++.+.+.++||
T Consensus 328 ~A~~~lDrlA~----~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 328 AAEQALDRLAL----HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred HHHHHHHHHHh----cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCC
Confidence 135555542 111123456678888999999999999999999999998 566778889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHH----
Q 000098 1632 IPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR---- 1703 (2256)
Q Consensus 1632 ~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~---- 1703 (2256)
+|+||.+|+.|+|.++..++++ +.+.+.|.|...+.+..+.++...++.++-.+...+.++.+.+++|.+++
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988865 33456678888888777778888889999888888887755555554444
Q ss_pred -hccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCC-H---HHHHHHHHHHHHHHHHhhccchhchHH
Q 000098 1704 -NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-E---SVRDAALGAGHVLVEHYATTSLPLLLP 1778 (2256)
Q Consensus 1704 -~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~-~---~VR~~Al~al~~iv~~~~~~~~~~llp 1778 (2256)
..++..+.+|+.++.+++.+|.+.+..|.||.+.+||.+...+...+ . .+|...++++..|....|.+.+...-
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a- 560 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA- 560 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH-
Confidence 45677999999999999999999999999999999999999887554 3 34445555555554444433221111
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcH
Q 000098 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSL 1858 (2256)
Q Consensus 1779 ~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~ 1858 (2256)
...+++++.+- + ...|.+.
T Consensus 561 --------------~eliqll~~~~----------------------------------~-------------~~~~~dd 579 (1075)
T KOG2171|consen 561 --------------EELIQLLLELQ----------------------------------G-------------SDQDDDD 579 (1075)
T ss_pred --------------HHHHHHHHhhc----------------------------------c-------------cchhhcc
Confidence 11122222210 0 0011122
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHH---hhhcCCC
Q 000098 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPIL---SRGLKDP 1935 (2256)
Q Consensus 1859 ~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L---~~~l~d~ 1935 (2256)
..|...+..|..++...++.+.+++|.+++.+.+......+. -...-....... +....+. .+.= .-+++..
T Consensus 580 ~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~-~~~d~~d~e~~~---~~~~~e~-~~~~~~e~~~I~Ts 654 (1075)
T KOG2171|consen 580 PLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDV-ALSDEEDEEEEQ---DLDGWEV-VELGDKENIGIRTS 654 (1075)
T ss_pred ccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcc-cCcCchhhhhcc---ccccchh-hccCCceeeeeeeh
Confidence 356667788999999999999999999999987665422110 000000000000 0000000 0000 0011122
Q ss_pred ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHh------chh----hHHhH
Q 000098 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIP-TIRTALCDSILEVRESAGLAFSTLFKSA------GMQ----AIDEI 2004 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~-~l~~~L~D~~~~VR~~A~~al~~l~~~~------g~~----~~~~i 2004 (2256)
....+..+|..|+++..... ..+.||..+++. .+....-..+..||.+|+.++..+.... |+. .+..+
T Consensus 655 vl~eK~~A~~~Lv~~a~~lk-~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~ 733 (1075)
T KOG2171|consen 655 VLDEKETACEALGEYAKELK-EAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAI 733 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 23456678888887766554 346789888888 3333445677899999999988887543 222 23445
Q ss_pred HHHHHHhhccCCchH---HHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCC-cc-ccHhhHHHHH
Q 000098 2005 VPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LN-FHLGTILPAL 2079 (2256)
Q Consensus 2005 lp~Ll~~L~~~~~~~---~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~-l~-~~l~~Ilp~L 2079 (2256)
.|.++..++.+.+.+ ..++++.+.+ +++|.. +. ++...+.-.+
T Consensus 734 ~~~l~~~l~~E~e~~vl~~vl~~f~~~i--------------------------------~~~G~~~L~~~~~~~~~~~~ 781 (1075)
T KOG2171|consen 734 RPALIKALEEEPETEVLSEILESFAECI--------------------------------EVMGDNCLNEDGLEALLGGL 781 (1075)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHH--------------------------------HhcCcccCCcHHHHHHHHHH
Confidence 566666666554432 2222333322 223311 11 1111111111
Q ss_pred HHh----h------------CCCCHH-----------HHHHHHHHHHHHHhhcch---hcHHHHHHHHHhhcCCCChhhH
Q 000098 2080 LSA----M------------GDDDMD-----------VQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIR 2129 (2256)
Q Consensus 2080 l~~----l------------~~~~~~-----------vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~~~~~~vR 2129 (2256)
... . .+.+.+ +-..+.+.+..+++..+. +.+..+.|.+...+.+..+--|
T Consensus 782 ~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r 861 (1075)
T KOG2171|consen 782 LAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVAR 861 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHH
Confidence 110 0 011111 222233333334443322 5578889999999988775559
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCC
Q 000098 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2256)
Q Consensus 2130 ~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e 2187 (2256)
+-|...++.+++.++....+|...+++.++..+.|.+++||++|...+|.++...+..
T Consensus 862 ~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~ 919 (1075)
T KOG2171|consen 862 QWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGED 919 (1075)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999999999999999999999999999999887765
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=344.63 Aligned_cols=705 Identities=17% Similarity=0.198 Sum_probs=495.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc-cc--cCCChhhHhhHHHHHHHh
Q 000098 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT-FV--NTVDAPSLALLVPIVHRG 1584 (2256)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~-~~--~~~~~~~l~~i~p~L~~~ 1584 (2256)
...+++.+|.++.+.+.++-.. |.+...+-.++..+...+..+|.+...+.+.. -. ..........+...+.++
T Consensus 22 s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~ 98 (885)
T KOG2023|consen 22 SQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHG 98 (885)
T ss_pred ccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhh
Confidence 3456889999999999888541 33322211222223333445565555555421 11 123335666777788899
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC--------cCchH
Q 000098 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--------EENFP 1656 (2256)
Q Consensus 1585 L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g--------~~~~~ 1656 (2256)
+.+.++-+|.....++..+++. . -..+.+.++|.|.+++..++....+.|+.|+..+++... ...++
T Consensus 99 lgd~~~lIr~tvGivITTI~s~----~-~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 99 LGDASPLIRATVGIVITTIAST----G-GLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred ccCchHHHHhhhhheeeeeecc----c-ccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 9999998887766666665542 1 234568999999999999999999999999999988542 12466
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHH
Q 000098 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~ 1733 (2256)
.++|.+++..++ .+++.|..|..++..++-..... .++.++..+....+|.++.||...|.+|..+-.+..+.+.|
T Consensus 174 ~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 174 IMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 799999998887 58889999999988877554443 56889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-----hccchhchHHHHHhhcCCCCHHHHHHHHHHHH--------
Q 000098 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1800 (2256)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~-----~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg-------- 1800 (2256)
+++.++..++...+|.+++|-..|++-+-.+.+.- -...++.++|.|.++|.-....+ -+++
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~-----~LL~~~eeD~~v 327 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI-----ILLKNNEEDESV 327 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH-----HHhcCccccccC
Confidence 99999999999999999998777766655554321 11245668888888874221111 0111
Q ss_pred ---------HHHHh-hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000098 1801 ---------DLLFK-VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1870 (2256)
Q Consensus 1801 ---------~ll~~-~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~ 1870 (2256)
.+-.. ..|....+. +++++||+.+. --.+.+|++|.+++.++..
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~-~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDV 381 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDAD-DEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDV 381 (885)
T ss_pred CchhhhccchhhhchhccCccccc-ccccccccccc-------------------------ccccccccHhhccHHHHHH
Confidence 00000 000000000 00000000000 0123457889888888877
Q ss_pred HHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChhhHHhHHHHH
Q 000098 1871 IVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGL 1947 (2256)
Q Consensus 1871 l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL 1947 (2256)
++...+. +++|.++|.+.+.|.+.+|.+|+.+.-+||.+++.+... ++++++|.+.+.+.|..|-+|...|++|
T Consensus 382 Lanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 382 LANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred HHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence 7665554 688999999999999999999999999999999987654 6889999999999999999999999999
Q ss_pred HHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHH---hHHHHHHHhhccCCc-----hH
Q 000098 1948 SEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID---EIVPTLLHALEDDQT-----SD 2019 (2256)
Q Consensus 1948 ~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~---~ilp~Ll~~L~~~~~-----~~ 2019 (2256)
+......-.+.-..|+..++..+...+.|.+..|+++|+.||+++.+..|.+.++ .++..|..++..-.. --
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY 538 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY 538 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH
Confidence 9877665444445788889999999999999999999999999999987765443 233333333322111 11
Q ss_pred HHHHHHHHHHhhh------cccchhhhhhhhhcCchhh----hHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCC----
Q 000098 2020 TALDGLKQILSVR------TTAVLPHILPKLVHLPLSA----FNAHALGALAEVAGPGLNFHLGTILPALLSAMGD---- 2085 (2256)
Q Consensus 2020 ~al~~L~~il~~~------~~~~lp~li~~L~~~p~~~----~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~---- 2085 (2256)
.|+..|.+-+|+. -+.++|.|+.++...+-+. --.+++.+++..+|..|.||...++...++.+..
T Consensus 539 DAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~ 618 (885)
T KOG2023|consen 539 DAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQL 618 (885)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHH
Confidence 3445555555432 2457788888776555332 2467899999999999999998888777765541
Q ss_pred -----CC----HHHHH---HHHHHHHHHHhhcch-----hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhh
Q 000098 2086 -----DD----MDVQS---LAKEAAETVTLVIDE-----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2256)
Q Consensus 2086 -----~~----~~vr~---~a~~al~~l~~~~~~-----~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~ 2148 (2256)
.+ ...|+ .+++-+..+.+..+. -.-..++..++.++.|+-|++|++|+.++|.+...+...+.
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~ 698 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI 698 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 11123 233444444444432 11234778899999999999999999999999999988999
Q ss_pred hhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHhhh-hhhhhhhccCCc--ccc--CCcCC
Q 000098 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS-RDKERRKKKGGP--ILI--PGFCL 2223 (2256)
Q Consensus 2149 ~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~~~-~d~~r~~~~g~~--~~l--~g~~l 2223 (2256)
|+..++++.+-..++...-.|.+||+||+|.+..+++.+.. .++.++...|-.. ....-...+-.+ +++ .|++.
T Consensus 699 p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~-~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~ 777 (885)
T KOG2023|consen 699 PNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK-QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC 777 (885)
T ss_pred chHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC
Confidence 99999999888777777889999999999999999998754 3444433222222 110000011111 233 68999
Q ss_pred CCcchhhHHHHHHHhhc-----cCCCCCCCCccccccC
Q 000098 2224 PKALQPLLPIFLQVFVL-----YTFSPSSLPKHCVCLI 2256 (2256)
Q Consensus 2224 p~~i~~~Lp~~~~~l~~-----~~~~~~~~~~~~~~~~ 2256 (2256)
|.-++|.+..|.+-+++ +.+++|+++++|+|.+
T Consensus 778 Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~m 815 (885)
T KOG2023|consen 778 PEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNM 815 (885)
T ss_pred HHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHh
Confidence 99999999999999999 5899999999999964
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=318.10 Aligned_cols=745 Identities=17% Similarity=0.204 Sum_probs=511.2
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccCC
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD 1212 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~~ 1212 (2256)
..+++.-.+++..+|+.+-..+-.. ..+|+.-.-+.-.|.+. ..+....|..+.+.|++-...-....
T Consensus 16 ~~lLk~s~Spn~~~~~~~~~~leq~-~~~pdfnnYL~~IL~~~-----------~~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 16 AQLLKNSQSPNSETRNNVQEKLEQF-NLFPDFNNYLIYILIRA-----------KSEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHH-hcccchhceeeEEEecc-----------cccchhHHHHhhhhHhccccccccCC
Confidence 3455555688999999988777433 33666322222222211 12345679999999998766433332
Q ss_pred hhHhHHHHH---HhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHh
Q 000098 1213 LPVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289 (2256)
Q Consensus 1213 ~~~l~~~lv---~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~ 1289 (2256)
-+.+..|+- .++++|.++.+|......+..++..+|-.+|++++|.+.++|..++. ...++|+.+|.++|+
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKICE 157 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHHh
Confidence 233333332 37999999999999888888888999999999999999999986321 456889999999997
Q ss_pred hh----ccC--CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHH---HhcCCCHHHHHHHHH
Q 000098 1290 HL----AKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ---LMKSDKYGERRGAAF 1360 (2256)
Q Consensus 1290 ~l----~~~--~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~---L~~~~~~~vR~~Aa~ 1360 (2256)
.- +.+ ...+..+++++++..+++++.+|..+..|+..++....+.+-..++..++. |.+++++.||+..+.
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 42 221 234788999999999999999999999999888765555444444444443 336778999999999
Q ss_pred HHHHHHhhhCcccchh-hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--ccCchHhHHHHHHHHHHHcC--C----
Q 000098 1361 GLAGVVKGFGISSLKK-YGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFS--D---- 1431 (2256)
Q Consensus 1361 ~L~~lv~~~g~~~~~~-~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l--~~~~~pyv~~llp~ll~~l~--D---- 1431 (2256)
++.-++....+..... ..|++++.+..++. |..+--+|+..+-.+++.. ...+.||+.+++|.++..+. |
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 9999988765443321 26888888888887 5557777888888888864 35689999999999987762 0
Q ss_pred -----C---------------------------------------------cHHHHHHHHHHHHHHHhhhhHhhHHhHHH
Q 000098 1432 -----Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2256)
Q Consensus 1432 -----~---------------------------------------------~~~VR~aa~~al~~l~~~l~~~~v~~ilp 1461 (2256)
+ +.+.|+.++.+++.++..++.+-++.++|
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~P 396 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLP 396 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHH
Confidence 0 13689999999999998888888899999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc----hhHHh
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIAS 1537 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~----~~i~~ 1537 (2256)
.+.+.|.++.|.+|.+++.++|++|+++.+.+.++||.++|.++.+|.|..|-||.-.||+|+++++++.+ .++..
T Consensus 397 lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p 476 (885)
T KOG2023|consen 397 LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP 476 (885)
T ss_pred HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753 35677
Q ss_pred HHHHHHhhhCCCChhHHHHHH-HHHhc-ccccCCChhhHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLD-ILLQT-TFVNTVDAPSLALLVPIVHRGLRE---RSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~-~L~~~-~~~~~~~~~~l~~i~p~L~~~L~d---~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
++..+++.+-|.++.|++|.. ++... .-......|.+..++..+...++- ++-. -...+++.++..++..-+
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl---ILYDAIgtlAdsvg~~Ln 553 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL---ILYDAIGTLADSVGHALN 553 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee---hHHHHHHHHHHHHHHhcC
Confidence 888888889999999986422 22210 000111123444444444444431 2222 234577888876655444
Q ss_pred chhhhhhhhHHHHHh---hcCCCHHHHHHHHHHHHHHHHhhCcCchH-------HHHHHHHHHhhc------CCC-----
Q 000098 1613 MIPYIGLLLPEVKKV---LVDPIPEVRSVAARAIGSLIRGMGEENFP-------DLVSWLLDALKS------DNS----- 1671 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~~~---L~d~~~~VR~~a~~aL~~L~~~~g~~~~~-------~lip~Ll~~L~~------~~~----- 1671 (2256)
-..|++.+||.|.+- +.|.+.++ -.-.+|+++++.++|..+.+ .++..+.++++. +..
T Consensus 554 ~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pd 632 (885)
T KOG2023|consen 554 KPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPD 632 (885)
T ss_pred cHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCC
Confidence 456899999988775 45666655 36789999999999877433 233333322221 110
Q ss_pred HHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1672 NVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
..--..+..-++.+++++|.. .-..++..+.+.++|+-+.||+.++..+|.+.+.+.+...|++..++|.+...+
T Consensus 633 kdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 633 KDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL 712 (885)
T ss_pred cceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC
Confidence 000122345567777777765 124577888889999999999999999999999999999999999999999877
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcch
Q 000098 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2256)
Q Consensus 1747 ~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~ 1826 (2256)
.-++-.+...|..|++.|.-.++.+.-+.+-|.+
T Consensus 713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl---------------------------------------------- 746 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVL---------------------------------------------- 746 (885)
T ss_pred ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHH----------------------------------------------
Confidence 7777778888999988887666544211111111
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-CCHHHHH
Q 000098 1827 EAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQ 1903 (2256)
Q Consensus 1827 e~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~ 1903 (2256)
..|+.. +......+-+...-+++.++-.+|..+.++++.++......++. .+.+.+.
T Consensus 747 --------------------~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~ 806 (885)
T KOG2023|consen 747 --------------------EDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKE 806 (885)
T ss_pred --------------------HHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHH
Confidence 111111 11112223333444667777778888889999998887766653 2445677
Q ss_pred HHHHHHHHHHHhhCccchhchHHH--HhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1904 VAGRALGELVRKLGERVLPSIIPI--LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1904 ~A~~aL~~lv~~~~~~~l~~llp~--L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
.|.+.+..++..-...+...++-. ....+.++....|+....-|...-...|......+..++
T Consensus 807 sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 807 SAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 888888777765544443322211 122344444445555544443333334443333333333
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=285.02 Aligned_cols=631 Identities=15% Similarity=0.170 Sum_probs=433.2
Q ss_pred hHHHHHHHhh-hcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhh-----------------hhc-cCCcHHHHHH
Q 000098 1056 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-----------------IAV-HDPEKSVAEA 1116 (2256)
Q Consensus 1056 ~~~~~~ll~~-~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~a~-~d~~~~~~~~ 1116 (2256)
..++..|.++ .+|||+++|..|+.+|.+... .||.+++.++...+ +.. +..|++-.+-
T Consensus 3 ~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~---~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 3 KSEFRCLGKNHVLSPDPNARLRAEAQLLELQS---GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred hHHHHHHHhcccCCCCCCccccHHHHHHHhcc---ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 4577788876 699999999999999998862 35555555555444 211 2334444444
Q ss_pred HHHHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CC-CcHHHHHHHHHHHH-----------------
Q 000098 1117 AEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLY----------------- 1176 (2256)
Q Consensus 1117 ~~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~-~~~~~~l~~L~~~~----------------- 1176 (2256)
+..+|..+..+.++++ ...+..|.++.+..-..+|+.+|+++.. .| ..|++++..+....
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 7889998888888888 7788999999999999999999999853 33 46666666665431
Q ss_pred -H-hhcCCC----------------CCCCCCCcchhHHHHHHHHHhhhhh----ccC-ChhHhHHHHHHhhcCCCCHHHH
Q 000098 1177 -I-RDIGLG----------------GDNVDAGWLGRQGIALALHSAADVL----RTK-DLPVIMTFLISRALADTNADVR 1233 (2256)
Q Consensus 1177 -~-~~~~~~----------------~~~~~~~~~~R~~~~~aL~~l~~~~----~~~-~~~~l~~~lv~~~l~D~~~~VR 1233 (2256)
. ++..|+ ....++.-.+|.++..||.....+. ..+ ..+++++.. +++.+..+.+++
T Consensus 160 y~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv-ceatq~~d~e~q 238 (858)
T COG5215 160 YHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV-CEATQGNDEELQ 238 (858)
T ss_pred HHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee-ehhccCCcHHHH
Confidence 1 111121 0122345678999999988854443 322 356677775 789999999999
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHhhcc--CCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHc-C
Q 000098 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK--ASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL-N 1310 (2256)
Q Consensus 1234 ~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~--~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L-~ 1310 (2256)
.+++-|...++..+ +..+-+++|+.|... .....++|.|.-.++++|+++|+.-- | +. .-.+.+ .
T Consensus 239 ~aafgCl~kim~Ly----Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEei--d--~~----~e~~~~pe 306 (858)
T COG5215 239 HAAFGCLNKIMMLY----YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEI--D--GE----MEDKYLPE 306 (858)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh--h--hH----HHHhhccc
Confidence 99999999888765 444446677766431 33344567899999999999997511 1 00 001111 1
Q ss_pred CCCHHHHHHHHHhhHHhHHhh-cCchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH
Q 000098 1311 TPSEAVQRAVSSCLSPLMQSM-QDEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2256)
Q Consensus 1311 ~~~~~Vq~~~~~~L~~lv~~~-~~~~~~~l~~Ll~~L~~------~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L 1383 (2256)
.|- |. ..+ .....+.+|.++..|.+ +++|.+.++|+.||..+++..|+..+. +++.++
T Consensus 307 ~p~---qn----------~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~Fv 371 (858)
T COG5215 307 VPA---QN----------HGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFV 371 (858)
T ss_pred Cch---hh----------cchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHH
Confidence 111 11 000 11234566677766665 347999999999999999999988876 699999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh----h-HH
Q 000098 1384 REGLADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G-VK 1457 (2256)
Q Consensus 1384 ~~~l~~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~----~-v~ 1457 (2256)
.+++.++ +|+.|+++.++||.+.++.. ..+.+|+.+.+|.++..+.|+.-.|.+++++|+++++.+...- + +.
T Consensus 372 Eqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~ 450 (858)
T COG5215 372 EQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLV 450 (858)
T ss_pred HHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 9999988 89999999999999999876 4578999999999999999999999999999999998776531 1 12
Q ss_pred hHHHHHHHhccCC-------ChhHHHHHHHHHHHHHhhC---hhhHhhhhhhHHHHHHHhh--cCCCHHHHHHHHHHHHH
Q 000098 1458 LVLPSLLKGLEDK-------AWRTKQSSVQLLGAMAYCA---PQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~-------~w~~R~~a~~~Lg~la~~~---p~~l~~~L~~Ivp~L~~~L--~D~~~~VR~aA~~aL~~ 1525 (2256)
......+.++.|. .|+.- .+...+++.. +..+.++++.|+..|++.- .+.+...|.++..+|+.
T Consensus 451 ~~vsa~liGl~D~p~~~~ncsw~~~----nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgt 526 (858)
T COG5215 451 LEVSASLIGLMDCPFRSINCSWRKE----NLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGT 526 (858)
T ss_pred HHHHHHHhhhhccchHHhhhHHHHH----hHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3334444555442 33321 2222333332 4456778888888888763 46677899999999999
Q ss_pred HHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1526 l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
+.....+... +++-.+..... ++..+++..+.+ ++..=.+.+ -.++...-+..+..+..
T Consensus 527 li~~~~d~V~-~~~a~~~~~~~---~kl~~~isv~~q--------------~l~~eD~~~---~~elqSN~~~vl~aiir 585 (858)
T COG5215 527 LILICPDAVS-DILAGFYDYTS---KKLDECISVLGQ--------------ILATEDQLL---VEELQSNYIGVLEAIIR 585 (858)
T ss_pred HHhhcchhHH-HHHHHHHHHHH---HHHHHHHHHhhh--------------hhhhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 9876654221 11111111111 111123322221 000000000 01333344444444444
Q ss_pred hcCCCCcchhhhhhhhHHHHHhhcCC-CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 000098 1606 LVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2256)
Q Consensus 1606 ~l~~~~~l~~~l~~Ll~~L~~~L~d~-~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~ 1681 (2256)
..+.++.+.-+++|..++..+... ...+-.....+++++...+++. |.+.++|++...|. ..+..+...+..-
T Consensus 586 --~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~~~avgl 662 (858)
T COG5215 586 --TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVLNSAVGL 662 (858)
T ss_pred --hcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHHHHHHHH
Confidence 345677888889999999999876 3456677888999999888765 67889999999984 4555555555566
Q ss_pred HHHHHHHhcHh---HHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1682 LSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1682 L~~i~~~~g~~---~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
++++...+|.+ +.+.++..+.+.++++ +..+|...+++||.++...|..|.+|++.++-.+.+.-
T Consensus 663 vgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 663 VGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 89999999988 5578899999999886 77899999999999999999999999999887776543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-23 Score=253.61 Aligned_cols=1014 Identities=18% Similarity=0.208 Sum_probs=655.5
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhh
Q 000098 1134 GLFKALSHSNYNVRLAAAEALATALDE-----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVL 1208 (2256)
Q Consensus 1134 ~ll~~l~~~~~~vR~~aa~ala~~~~~-----~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~ 1208 (2256)
.+++..+++|.+.|--|.--|..=+.. ..|+...++..+..... +.+-++..-|..++.-++.-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~----------D~ngEVQnlAVKClg~lvsKv 78 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE----------DKNGEVQNLAVKCLGPLVSKV 78 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh----------ccCcHHHHHHHHHHHHHHhhc
Confidence 578888899999998887666544422 33555556666555421 344577877888888887777
Q ss_pred ccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc--------ccccchHHHHHHHhhccCCChhhhhhhhhHH
Q 000098 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~--------~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~a 1280 (2256)
+.+++..+++-| +.++-...+.-|....-.....+.+..+ ..+..+.|.|-..+.. .+..+.++--+
T Consensus 79 ke~~le~~ve~L-~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~----qe~~sai~~e~ 153 (1233)
T KOG1824|consen 79 KEDQLETIVENL-CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISK----QEDVSAIKCEV 153 (1233)
T ss_pred hHHHHHHHHHHH-hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhh----cccchhhHHHH
Confidence 777788888887 4454444444555444444444444332 2233444554444332 11223466666
Q ss_pred HHHHHHHHhhhccCCcchH-HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhc-CchHHHHHHHHHHHhcCCCHHHHHHH
Q 000098 1281 VIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGA 1358 (2256)
Q Consensus 1281 v~~L~~La~~l~~~~~~i~-~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~-~~~~~~l~~Ll~~L~~~~~~~vR~~A 1358 (2256)
++.++.+-..++.--|.++ .++.-++..+..+...||+.+..||+.+..... +...+++..++..|........-+.-
T Consensus 154 lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~ 233 (1233)
T KOG1824|consen 154 LDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTY 233 (1233)
T ss_pred HHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 6666655444443333343 455566667888888999999999998887664 34577888888888877767777788
Q ss_pred HHHHHHHHhhhCcccchh-hcHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcC-CC--
Q 000098 1359 AFGLAGVVKGFGISSLKK-YGIAATLREGLA--DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ-- 1432 (2256)
Q Consensus 1359 a~~L~~lv~~~g~~~~~~-~~il~~L~~~l~--~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~-D~-- 1432 (2256)
.++|+.+.+..|...... ..++|.+.+... +.++.+-||..+.+++.+...+++.+.||+..++..+++.+. |+
T Consensus 234 Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy 313 (1233)
T KOG1824|consen 234 IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNY 313 (1233)
T ss_pred HHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCC
Confidence 899999999887432221 268888888762 234678999999999999999999999999999999888762 11
Q ss_pred -------------------------------cHHHHHHHHHHHHHHHhhhhH---hhHHhHHHHHHHhccCCChhHHHHH
Q 000098 1433 -------------------------------VVAVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRTKQSS 1478 (2256)
Q Consensus 1433 -------------------------------~~~VR~aa~~al~~l~~~l~~---~~v~~ilp~Ll~~L~~~~w~~R~~a 1478 (2256)
+..||.+|+.++..+...-.. .-...+=|.++..+.+..-.+|.-.
T Consensus 314 ~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 314 NYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHH
Confidence 237999999999887643221 1113444566666665555555555
Q ss_pred HHHHHHHHhhC------------------h---hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc---hh
Q 000098 1479 VQLLGAMAYCA------------------P---QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE 1534 (2256)
Q Consensus 1479 ~~~Lg~la~~~------------------p---~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~ 1534 (2256)
+.++-++.... | ..++...+.|+..+-..+++....-|..+..-|..+..+.+. +.
T Consensus 394 f~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~ 473 (1233)
T KOG1824|consen 394 FHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQH 473 (1233)
T ss_pred HHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhc
Confidence 54444443321 1 124455667777777777765555677777777777776654 45
Q ss_pred HHhHHHHHHhhhCCCChhH--H-HHHHHHHh--cccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000098 1535 IASLVPTLLMGLTDPNDHT--K-YSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~v--r-~al~~L~~--~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~ 1609 (2256)
+..++|.+...+.|.+... + .++.-+.. .......-.|.++.+.|.+.....++-+.+-..|......+++.+..
T Consensus 474 ~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 474 IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc
Confidence 6788999999998876422 1 33333322 22333344567778889999999998888888887777888876532
Q ss_pred --C---CcchhhhhhhhHHHHHhhc--CCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHH
Q 000098 1610 --P---KDMIPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2256)
Q Consensus 1610 --~---~~l~~~l~~Ll~~L~~~L~--d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa 1679 (2256)
+ .+..||...+.....+.+. |.+.+||+.|+.|+|.+...+|+. ..+.++|.+++.|+++. .|..++
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi---TRl~Av 630 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI---TRLTAV 630 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh---HHHHHH
Confidence 2 3566788777776666654 788999999999999999999843 56788999999998743 688888
Q ss_pred HHHHHHHHHh---c-HhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCCCHHHH
Q 000098 1680 QGLSEVLAAL---G-TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVR 1754 (2256)
Q Consensus 1680 ~~L~~i~~~~---g-~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~~~~VR 1754 (2256)
.++..+...- . ...+..+++.+...++......|.+.+.++..+....+..+..++ +.++..+..++.+.+-.+-
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 8888776432 1 224567788888888777888899999999999988888776554 4566666666666655566
Q ss_pred HHHHHHHHHHHHHhhcc---chhchHHHHHhhcCCCCHHH-HHHHH-HHHHHHHHhhcCCCccc-------cccCCCCCC
Q 000098 1755 DAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRI-RQSSV-ELLGDLLFKVAGTSGKA-------LLEGGSDDE 1822 (2256)
Q Consensus 1755 ~~Al~al~~iv~~~~~~---~~~~llp~L~~~l~d~~~~i-R~~sv-~llg~ll~~~~g~~~~~-------~~~~~~ed~ 1822 (2256)
..|...+..+...+... .-..+++.+...+.++--.- -.+++ ..+..+... +..... ......+..
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t--~~~~l~y~~l~s~lt~PV~~~~ 788 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT--KEPDLDYISLLSLLTAPVYEQV 788 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc--CCCCccHHHHHHHHcCCccccc
Confidence 66666666554433321 12346666666555432111 11111 111111110 000000 000000000
Q ss_pred Ccc-hHH-------HHHHHHHHhcchhhHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 000098 1823 GAS-TEA-------HGRAIIEVLGRDKRNEVLAALYMV-R-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2256)
Q Consensus 1823 ~~~-~e~-------~~~~l~~~Lg~e~~~~vl~~L~~~-~-~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~ 1892 (2256)
..+ ..+ +...+...-+++.. -+...+..- . ...+..+|--|+-.++.+..+.+.... +.+...+++
T Consensus 789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s~-s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~---~e~~~~iie 864 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVAALTCACPQKSK-SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ---NELKDTIIE 864 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccch-hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc---hhhHHHHHH
Confidence 000 111 11112222221111 112222221 1 233445677777778887766543322 334446788
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHH
Q 000098 1893 SLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2256)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~ 1972 (2256)
++++++++++.+|+.+||.+.-. -++..+|.+.+.+.. +|..+.-....+.+++.....+.+.++.+.+...+.+
T Consensus 865 af~sp~edvksAAs~ALGsl~vg----nl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k 939 (1233)
T KOG1824|consen 865 AFNSPSEDVKSAASYALGSLAVG----NLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFK 939 (1233)
T ss_pred HcCCChHHHHHHHHHHhhhhhcC----chHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 89999999999999999988642 345666666655532 4666667788999999888877788999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc--hHHHHHHHHHHHhhhcccchhhhhh------hh
Q 000098 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILP------KL 2044 (2256)
Q Consensus 1973 ~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~~lp~li~------~L 2044 (2256)
......+..|.-.++++|.++-. .-+.++|.|-..+.++.. ....+.+++-.+....+.+-|.+-+ ++
T Consensus 940 ~cE~~eegtR~vvAECLGkL~l~----epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~ 1015 (1233)
T KOG1824|consen 940 HCECAEEGTRNVVAECLGKLVLI----EPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKL 1015 (1233)
T ss_pred hcccchhhhHHHHHHHhhhHHhC----ChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHH
Confidence 88888888899999999999752 234578888887777543 2233333333333332333332221 22
Q ss_pred hcCchhhhHHHHHHHHHHHhCC---CccccHhhHHHHHHHhh------------------CCCCHHHHHHHHHHHHHHHh
Q 000098 2045 VHLPLSAFNAHALGALAEVAGP---GLNFHLGTILPALLSAM------------------GDDDMDVQSLAKEAAETVTL 2103 (2256)
Q Consensus 2045 ~~~p~~~~~~~aL~~La~~~g~---~l~~~l~~Ilp~Ll~~l------------------~~~~~~vr~~a~~al~~l~~ 2103 (2256)
+..|--.++-.|+..+..+++. -+...++.++|.+.+.- -|+.-++|..|.+|+-+++.
T Consensus 1016 ~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1016 LRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred HhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHH
Confidence 2333333444566666555542 23345677777776531 12335789999999999999
Q ss_pred hc-chhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcC------------CCChHHH
Q 000098 2104 VI-DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS------------DSDSTTV 2170 (2256)
Q Consensus 2104 ~~-~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~------------D~d~~Vr 2170 (2256)
++ +.-.+..|+..+..+++|. ..++....-.+..++..++..+...+..++.+|-..+. |...+..
T Consensus 1096 scld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLk 1174 (1233)
T KOG1824|consen 1096 SCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELK 1174 (1233)
T ss_pred hhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHH
Confidence 87 5577889999999999987 88999999999999999999999999999999987764 3345788
Q ss_pred HHHHHHHHHhh
Q 000098 2171 AAAWEALSRVV 2181 (2256)
Q Consensus 2171 ~~A~~aL~~l~ 2181 (2256)
+.|..++..+.
T Consensus 1175 RSAlRav~~L~ 1185 (1233)
T KOG1824|consen 1175 RSALRAVAALL 1185 (1233)
T ss_pred HHHHHHHHHHh
Confidence 99999999984
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-22 Score=248.84 Aligned_cols=750 Identities=17% Similarity=0.208 Sum_probs=519.0
Q ss_pred CCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhC
Q 000098 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389 (2256)
Q Consensus 1311 ~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~ 1389 (2256)
+|++.++..+-+-|..+ ..++++.++..|-+.|.++. ....|..|+..|..-+..
T Consensus 12 SpD~n~~~~Ae~~l~~~---~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~a--------------------- 67 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQA---QSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTA--------------------- 67 (859)
T ss_pred CCCcchHHHHHHHHHHH---HhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhcc---------------------
Confidence 56767776554433332 24567777777777777665 355677666555432221
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh-hhHhhHHhHHHHHHHhc
Q 000098 1390 RNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGL 1467 (2256)
Q Consensus 1390 ~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~-l~~~~v~~ilp~Ll~~L 1467 (2256)
++++.......-|-. +.+-. .++-..++..++.+++..+..|.+++..++.. ++...++.+++.+...+
T Consensus 68 -kd~~~k~~~~qRWl~--------l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv 138 (859)
T KOG1241|consen 68 -KDPERKQQYQQRWLQ--------LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV 138 (859)
T ss_pred -CCHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc
Confidence 233333222221111 11111 23445567788989999999999999998764 66666789999999999
Q ss_pred cCCCh-hHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhcCc----h-hHHhH
Q 000098 1468 EDKAW-RTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQTALQQVGSVIKN----P-EIASL 1538 (2256)
Q Consensus 1468 ~~~~w-~~R~~a~~~Lg~la~~~-p~~l~~~L~~Ivp~L~~~L~--D~~~~VR~aA~~aL~~l~~~i~~----~-~i~~l 1538 (2256)
.+... ..|.++++++|.+++.. |+.+......++-.++.+.. .++..||.+|..||..-.+..++ . +...+
T Consensus 139 ~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i 218 (859)
T KOG1241|consen 139 GEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYI 218 (859)
T ss_pred ccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhcee
Confidence 86554 49999999999999885 67777788889888888875 56788999999999877665542 1 33556
Q ss_pred HHHHHhhhCCCChhHH-HHHHHHHhc--ccccCCChhhH-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC-----
Q 000098 1539 VPTLLMGLTDPNDHTK-YSLDILLQT--TFVNTVDAPSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE----- 1609 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr-~al~~L~~~--~~~~~~~~~~l-~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~----- 1609 (2256)
+...+++.+.|+..++ .++..|.++ .+..+. .+++ .-+.++-...+++.+.++...+.+++.++|+---+
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m-~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM-EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888887 355555541 111111 2232 23666777788889999999999999988862111
Q ss_pred CCcchhh------------hhhhhHHHHHhhc-------CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCC
Q 000098 1610 PKDMIPY------------IGLLLPEVKKVLV-------DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670 (2256)
Q Consensus 1610 ~~~l~~~------------l~~Ll~~L~~~L~-------d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~ 1670 (2256)
.+....+ ++.++|.|.+.|. |.+|..-.+|..||..++...|++..+.++|++-+.+++ +
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~-p 376 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN-P 376 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC-c
Confidence 0111111 3468888888875 357999999999999999999999999999999989987 7
Q ss_pred CHHHHHHHHHHHHHHHHHhcHhH----HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH--HHHHHHHHHHHHH
Q 000098 1671 SNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF--QNYLQQVLPAILD 1744 (2256)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~~g~~~----l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f--~~yl~~ilp~Ll~ 1744 (2256)
++..|..++.++|.+..+-.... ..+.+|.++..+.|+.-.||.++.++||.++....... ..|+..+++.++.
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 88899999999999988776653 36678889999999999999999999999988765422 3578889999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCc
Q 000098 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGA 1824 (2256)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~ 1824 (2256)
++.|+ |.|-.+++.++..+++........ ....+ .
T Consensus 457 gL~De-Prva~N~CWAf~~Laea~~eA~~s------------------------------------------~~qt~-~- 491 (859)
T KOG1241|consen 457 GLNDE-PRVASNVCWAFISLAEAAYEAAVS------------------------------------------NGQTD-P- 491 (859)
T ss_pred HhhhC-chHHHHHHHHHHHHHHHHHHhccC------------------------------------------CCCCC-c-
Confidence 99986 667777888877776544321000 00000 0
Q ss_pred chHHHHHHHHHHhcchhhHHHHHHHHHH--hcC-CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-----
Q 000098 1825 STEAHGRAIIEVLGRDKRNEVLAALYMV--RSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS----- 1896 (2256)
Q Consensus 1825 ~~e~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D-~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~----- 1896 (2256)
. ..++..++..|... +.| ...+.|.+|.+++..++.+.+....+.+..+...+...+..
T Consensus 492 -~------------t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~ 558 (859)
T KOG1241|consen 492 -A------------TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQ 558 (859)
T ss_pred -c------------chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01334445555444 334 34568999999999999999988777776666655543321
Q ss_pred ----C----CHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHh
Q 000098 1897 ----S----SSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2256)
Q Consensus 1897 ----~----~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~ 1964 (2256)
. -.+++..-+.+|+.+.++++.+ +.+.++..+.+.++.+ +..+...+..+++.++...|+. +..|++
T Consensus 559 ~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~-F~kym~ 637 (859)
T KOG1241|consen 559 ILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKG-FAKYMP 637 (859)
T ss_pred hccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHh-HHHHHH
Confidence 1 1245566678899999999876 4566777777777663 3445667788888888888865 678999
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhch---hhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhh
Q 000098 1965 ELIPTIRTALC-DSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHI 2040 (2256)
Q Consensus 1965 ~li~~l~~~L~-D~~~~VR~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~l 2040 (2256)
.+.|.+...|. -.+..|..+|....|.+.+.++. .+.++++..|++.|.++... +.+-|
T Consensus 638 ~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~h---------------R~vKP-- 700 (859)
T KOG1241|consen 638 AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLH---------------RNVKP-- 700 (859)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccc---------------ccccc--
Confidence 99999999884 45567888888888888887765 34566777777777765421 12222
Q ss_pred hhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhh--C-CC--C------HHHHHHHHHHHHHHHhhcch--
Q 000098 2041 LPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM--G-DD--D------MDVQSLAKEAAETVTLVIDE-- 2107 (2256)
Q Consensus 2041 i~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l--~-~~--~------~~vr~~a~~al~~l~~~~~~-- 2107 (2256)
....+++-++-..|..|.+|+..++|.+...- . ++ + .++|+.+.++..-++..++.
T Consensus 701 -----------~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~ 769 (859)
T KOG1241|consen 701 -----------AILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHA 769 (859)
T ss_pred -----------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 24678888899999999999999999988765 2 11 1 46799999998888887642
Q ss_pred --hcHHHHHHHHHhhc----CCCC--hhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHH-HcCCCChHHHHHHHHH
Q 000098 2108 --EGVESLVSELLKGV----GDNQ--ASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIV-LLSDSDSTTVAAAWEA 2176 (2256)
Q Consensus 2108 --~~~~~ll~~Ll~~l----~~~~--~~vR~~A~~~l~~l~~~~~~~~~~y~--~~il~~L~~-~l~D~d~~Vr~~A~~a 2176 (2256)
..+.++++.+++.+ .+++ ...-.+|+..||.++...+.+..... ..++..++. .........++.|.||
T Consensus 770 ~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa 849 (859)
T KOG1241|consen 770 DVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWA 849 (859)
T ss_pred chhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 23444455444443 3443 45677888999999997775544422 245555554 4455666788888888
Q ss_pred HHHhhc
Q 000098 2177 LSRVVA 2182 (2256)
Q Consensus 2177 L~~l~~ 2182 (2256)
.-.+.+
T Consensus 850 ~e~ikr 855 (859)
T KOG1241|consen 850 TEEIKR 855 (859)
T ss_pred HHHHHH
Confidence 777654
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-20 Score=226.41 Aligned_cols=678 Identities=17% Similarity=0.229 Sum_probs=460.1
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccC
Q 000098 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294 (2256)
Q Consensus 1216 l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~-~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~ 1294 (2256)
++..|+ -..+..+..|..++..+..-...+|.. .+++++|.+.+. . .+|.-|+..+..+..+-..++..
T Consensus 365 i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~-----t---LeDqerhllVkvidriLyklDdl 434 (1172)
T KOG0213|consen 365 IMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSP-----T---LEDQERHLLVKVIDRILYKLDDL 434 (1172)
T ss_pred HHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCc-----c---ccchhhhhHHHHHHHHHHhhccc
Confidence 555543 356778888888887666555556554 355666654321 1 12234666676666665555432
Q ss_pred -CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccc
Q 000098 1295 -DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2256)
Q Consensus 1295 -~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~ 1373 (2256)
.|+++.++--+-..|-+++...+...-+.+..+++..+ +...+..+=..+ ++.+.-||...+.+.+.++..+|..
T Consensus 435 vrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDi-dn~deYVRnttarafavvasalgip- 510 (1172)
T KOG0213|consen 435 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDI-DNKDEYVRNTTARAFAVVASALGIP- 510 (1172)
T ss_pred chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHHhCcH-
Confidence 35555544333334556665554433344444544332 222222222222 2335789999999999999999853
Q ss_pred chhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1374 ~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.++|+|.....++++|..|+.++.+...|+..+|...-||+..++..+-.++.|.+..||..++.++..++....+
T Consensus 511 ----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 511 ----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred ----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999989999999999999999999999999999999999998888
Q ss_pred hhH---HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1454 QGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1454 ~~v---~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
+++ +.++.+|++++...--..-.+-+.++|.++.........++ .+++-.+..-+..++.+.++.....+.++|..
T Consensus 587 ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t 666 (1172)
T KOG0213|consen 587 YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCAT 666 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc
Confidence 765 67888998888644333333345666666554333333333 35555666677888888888888888888876
Q ss_pred cCc-h-hH-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000098 1530 IKN-P-EI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2256)
Q Consensus 1530 i~~-~-~i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~ 1606 (2256)
-+- + ++ .+++|.++...-.. |.|++. + .. +.....-..+|.-
T Consensus 667 ~Gv~~~y~r~dilp~ff~~fw~r----rmA~dr----------------------------r--~y-kqlv~ttv~ia~K 711 (1172)
T KOG0213|consen 667 DGVEPAYIRFDILPEFFFSFWGR----RMALDR----------------------------R--NY-KQLVDTTVEIAAK 711 (1172)
T ss_pred cCCCHHHHhhhhhHHHHhhhhhh----hhhccc----------------------------c--ch-hhHHHHHHHHHHH
Confidence 542 2 33 45566555432110 001100 0 00 0111112223332
Q ss_pred cCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-----chHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 000098 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2256)
Q Consensus 1607 l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-----~~~~lip~Ll~~L~~~~~~~~R~~aa~~ 1681 (2256)
++. ..++..+..-+.|..+.-|...+.++..+...+|.. .-+.++..++..++.+.... .-...+
T Consensus 712 vG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d--~vml~g 781 (1172)
T KOG0213|consen 712 VGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED--SVMLLG 781 (1172)
T ss_pred hCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch--hhhhhh
Confidence 232 124555556677888888999999998888877743 22346677777776543321 234578
Q ss_pred HHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000098 1682 LSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAA 1757 (2256)
Q Consensus 1682 L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~-f~~yl~~ilp~Ll~~L~d~~~~VR~~A 1757 (2256)
++.++..+|.. ++.++...++..++++.+.+|+.++.+++.++..+... =...+..+=-.+...+..+.++|--..
T Consensus 782 fg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsI 861 (1172)
T KOG0213|consen 782 FGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSI 861 (1172)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHH
Confidence 89999988863 78889999999999999999999999999988776432 012334444557888998999999889
Q ss_pred HHHHHHHHHHhhcc----chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHH
Q 000098 1758 LGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2256)
Q Consensus 1758 l~al~~iv~~~~~~----~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l 1833 (2256)
+.|+..|+...+-. .+..++|.|...+.+.+.++...++.++|.+..+-+ + .
T Consensus 862 LgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp------------E---~--------- 917 (1172)
T KOG0213|consen 862 LGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP------------E---Y--------- 917 (1172)
T ss_pred HHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc------------c---c---------
Confidence 99999998877643 355689999999999999999999999999863210 0 0
Q ss_pred HHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELV 1913 (2256)
Q Consensus 1834 ~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv 1913 (2256)
.+...+-++--.|...+......+|.+|...|+.++...++ .+++..|++.+ ...+-..|....-+++-+.
T Consensus 918 ---v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP--qdVLatLlnnL----kvqeRq~RvcTtvaIaIVa 988 (1172)
T KOG0213|consen 918 ---VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP--QDVLATLLNNL----KVQERQNRVCTTVAIAIVA 988 (1172)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH--HHHHHHHHhcc----hHHHHHhchhhhhhhhhhh
Confidence 01111122333344445556678999999999999887665 25566665554 4445555666666777777
Q ss_pred HhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1914 RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1914 ~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
+.+|.- .++|.|..-...++.++++|+..+++.+.+..|. +-.+|+-.+.|.+..++.|.|..-|+.|..++..+.
T Consensus 989 E~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 989 ETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred hhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 766653 4677788777888899999999999988887764 356799999999999999999999988876665554
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-21 Score=234.18 Aligned_cols=717 Identities=15% Similarity=0.214 Sum_probs=496.1
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~ 1506 (2256)
..++..+..|..+..-+..=...++... +.+++|.+++.--+ -+.|+--+..+..+.+...+...++...|+=.+-.
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLe--DqerhllVkvidriLyklDdlvrpYVhkILvViep 448 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLE--DQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEP 448 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCcccc--chhhhhHHHHHHHHHHhhcccchhceeeeEEEeec
Confidence 4567788888887766665555554433 36777776654322 24577778888888888877777777777666667
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH----HHHHHhcccccCCChhhHhhHHHHHH
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS----LDILLQTTFVNTVDAPSLALLVPIVH 1582 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a----l~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2256)
++-|++...|....+.+.++++..+ +..++..+-.-+.+.++++|+. ....+. .-.++.++|.+.
T Consensus 449 llided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafavvas--------algip~llpfLk 517 (1172)
T KOG0213|consen 449 LLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAVVAS--------ALGIPALLPFLK 517 (1172)
T ss_pred ceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHHHHH--------HhCcHHHHHHHH
Confidence 8889999999999888888887654 3344444444455566778742 222221 112445778888
Q ss_pred HhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc---CchHHH
Q 000098 1583 RGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDL 1658 (2256)
Q Consensus 1583 ~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~---~~~~~l 1658 (2256)
...+++ +|.-|..+..++..+|.+.+. .+.||+..++..+...+.|.+..||..++.+++.++++.++ +.|+.+
T Consensus 518 avc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 518 AVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred HHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 877776 999999999999999987653 57799999999999999999999999999999999998765 468888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1659 ip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
+..|.+.+.++... .-..-..+++-++.-...+ +-.++|-.++.-..+++.+.|...+..+..+|..-|-+-.--
T Consensus 596 lkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~ 674 (1172)
T KOG0213|consen 596 LKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYI 674 (1172)
T ss_pred HHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHH
Confidence 88898888774432 2333334555555444444 336778888888999999999999999999998888653222
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH---------HHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1735 LQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~~VR~~Al---------~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
-.+++|.++...- .|..|. ..-..|....| ...++..+...+.|++..-|...++++..+...
T Consensus 675 r~dilp~ff~~fw-----~rrmA~drr~ykqlv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~ 746 (1172)
T KOG0213|consen 675 RFDILPEFFFSFW-----GRRMALDRRNYKQLVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGR 746 (1172)
T ss_pred hhhhhHHHHhhhh-----hhhhhccccchhhHHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHHhc
Confidence 2467888876543 233332 11122333333 234555566666788887787777777665422
Q ss_pred hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 000098 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2256)
Q Consensus 1806 ~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~ 1885 (2256)
.+.. +-+ ..+ ..+.+..++..+........ ..+..|+.++...+...++|+|.
T Consensus 747 ----lg~~------did--------erl--------eE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpq 799 (1172)
T KOG0213|consen 747 ----LGAA------DID--------ERL--------EERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQ 799 (1172)
T ss_pred ----cccc------ccc--------HHH--------HHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHH
Confidence 1110 000 000 11233444443322222111 34456777777778888999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh---Ccc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHh
Q 000098 1886 LMNTLISSLASSSSERRQVAGRALGELVRKL---GER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2256)
Q Consensus 1886 Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~---~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~ 1961 (2256)
+...++..|++.++.+|+.|+..++.++..+ ++. .+..+=-.|.+.+.+..|.+--.+..++..|....|-..+.|
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999887654 433 455555567788888889998888888988888888777777
Q ss_pred hHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhH-----HhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccc
Q 000098 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAV 2036 (2256)
Q Consensus 1962 ~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~-----~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~ 2036 (2256)
-...++|.+...|.+.++.|.++....++.++.. |++++ -.+.-.|++.|.... +
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE~v~aREWMRIcfeLlelLkahk----------K--------- 939 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPEYVSAREWMRICFELLELLKAHK----------K--------- 939 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHHHHHHH----------H---------
Confidence 7888999999999999999999999989988874 33322 122222333222211 0
Q ss_pred hhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHH
Q 000098 2037 LPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSE 2116 (2256)
Q Consensus 2037 lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~ 2116 (2256)
.+.......++++++..|+ +.++..|++.|...+-..|-...-+++-+.+.+ +.=.++|.
T Consensus 940 -----------~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c---~pFtVLPa 999 (1172)
T KOG0213|consen 940 -----------EIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETC---GPFTVLPA 999 (1172)
T ss_pred -----------HHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc---CchhhhHH
Confidence 1112345688999999998 678888888886555444443333444444333 45578899
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC----Cchhch
Q 000098 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK----EVQPSY 2192 (2256)
Q Consensus 2117 Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~----e~l~~l 2192 (2256)
|+.-.+-++..+.++.+.++..||+..+..-.+|+..+.+-|...|-|+|..-|+.|..++..+....+. |.+..+
T Consensus 1000 lmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHL 1079 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHL 1079 (1172)
T ss_pred HHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHH
Confidence 9999999999999999999999999999888999999999999999999999999999999988765442 222222
Q ss_pred HHHHH--------HHHhhhhhhhhhhccCCccccCCcCCCCcchhhHHHHHHHhhccCCCCC
Q 000098 2193 IKVIR--------DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFVLYTFSPS 2246 (2256)
Q Consensus 2193 v~~l~--------~~l~~~~d~~r~~~~g~~~~l~g~~lp~~i~~~Lp~~~~~l~~~~~~~~ 2246 (2256)
+..+- ..++... + .+.||..--|..+++-..+|||++.+...|
T Consensus 1080 LN~iWpNIle~sPhviqa~~--------e---~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR 1130 (1172)
T KOG0213|consen 1080 LNLIWPNILETSPHVIQAFD--------E---AMEGLRVALGPQAMLKYCLQGLFHPARKVR 1130 (1172)
T ss_pred HHHhhhhhcCCChHHHHHHH--------H---HHHHHHHHhchHHHHHHHHHhccCcHHHHH
Confidence 22111 1111111 1 245565556888999999999998876655
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-17 Score=217.84 Aligned_cols=602 Identities=17% Similarity=0.278 Sum_probs=414.6
Q ss_pred hhhhHHHHHHHHHHhhhccCC---cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--chHHHHHHHHHHHhcC
Q 000098 1275 LVREGVVIFTGALAKHLAKDD---PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--EAPTLVSRLLDQLMKS 1349 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~---~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~~~~~l~~Ll~~L~~~ 1349 (2256)
+.|++.+.+|-.+.+++.... -..+++...+...|.+.++.+|..+++.++ +++.+++ .-..++..|+.+|..+
T Consensus 833 h~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlg-lVYelgd~~~k~~LV~sL~~tl~~G 911 (1702)
T KOG0915|consen 833 HERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLG-LVYELGDSSLKKSLVDSLVNTLTGG 911 (1702)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCce-EEEecCCchhHHHHHHHHHHHHhcc
Confidence 789999999999988876431 234667788888999999999998888765 4555543 3467888888888754
Q ss_pred CCHH---------------------HHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000098 1350 DKYG---------------------ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2256)
Q Consensus 1350 ~~~~---------------------vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~ 1408 (2256)
+... -.....+-|..++..+| +++++-..++...++..|..|.||.++|+.|++
T Consensus 912 kr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-----qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~ 986 (1702)
T KOG0915|consen 912 KRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-----QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK 986 (1702)
T ss_pred ccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-----ChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence 3110 01233445555665555 234444555566666689999999999999999
Q ss_pred HhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh---hhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000098 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 1485 (2256)
Q Consensus 1409 ~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~---l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~l 1485 (2256)
..+..++||+.+++|.+...--|++..|+.+.....+.+... ..+....+|+..++..+.+..||+|.++|.+|..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988777777543 22344578899999999999999999999999999
Q ss_pred HhhChh-hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc
Q 000098 1486 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2256)
Q Consensus 1486 a~~~p~-~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2256)
..+.|. ++...+|+++..++..+.|-+..||.+|-.+...+++.+ -.+.|+...+.
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~-------------vr~~d~~~~~~---------- 1123 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC-------------VRICDVTNGAK---------- 1123 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhcccCCccc----------
Confidence 998764 578899999999999999999999999998888777643 12333322110
Q ss_pred cccCCChhhHhhHHHHHH-HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHH-HHHH
Q 000098 1565 FVNTVDAPSLALLVPIVH-RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV-AARA 1642 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~-~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~-a~~a 1642 (2256)
....++.++|.+. ++..+.-+++|+.+...+..+.+ ..++.+.||.+.++|.|......-.+.|-.. +.++
T Consensus 1124 -----~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~K--ssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1124 -----GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAK--SSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred -----HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH--hchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 1123445666654 35556778999999999988888 3557899999999999999988766665332 2222
Q ss_pred HHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC-CHHHHHHHHHHHH
Q 000098 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFK 1721 (2256)
Q Consensus 1643 L~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~-~~~vR~~al~~l~ 1721 (2256)
.+. + .+.+..+...... . .-..+++...+...+...+.++.|.+.+.++.. .-..|.++...+.
T Consensus 1197 ~~~-------e--~ealDt~R~s~ak-s-----spmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1197 INI-------E--TEALDTLRASAAK-S-----SPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred hhh-------H--HHHHHHHHHhhhc-C-----CcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence 111 0 1122222111111 0 112355777777778888999999999988765 6677889999999
Q ss_pred HhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000098 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2256)
Q Consensus 1722 ~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ 1801 (2256)
.+...+|.+..||...++..++.++.|.++.+|.+-..|++.++..-.++....++..+......+....+..++..+-+
T Consensus 1262 ~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~ 1341 (1702)
T KOG0915|consen 1262 LLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN 1341 (1702)
T ss_pred HHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH
Confidence 99999999999999999999999999999999999888988887655544333344333322211111111122222222
Q ss_pred HHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHH
Q 000098 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2256)
Q Consensus 1802 ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~ 1881 (2256)
+... ..+.| ...-..+++.++..+.+.......-=-.+|..+++....+++-
T Consensus 1342 Ian~---------------------------s~e~L-kn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl 1393 (1702)
T KOG0915|consen 1342 IANY---------------------------SQEML-KNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRL 1393 (1702)
T ss_pred HHHh---------------------------hHHHH-HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhh
Confidence 2110 01111 1122346666666655543333333346788888777677766
Q ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhCc----cchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC
Q 000098 1882 IMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955 (2256)
Q Consensus 1882 ~l~~Ll~~L~~~L-~~~~~~~R~~A~~aL~~lv~~~~~----~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~ 1955 (2256)
+.+.++..+.... ++..+..|..++.++..++..... ++.-.+.+.+.+.+.....+.++....++......++
T Consensus 1394 ~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~ 1472 (1702)
T KOG0915|consen 1394 YLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGL 1472 (1702)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhH
Confidence 7777666665444 455589999999999888875433 3455666777777766666666666666665555544
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=230.97 Aligned_cols=513 Identities=22% Similarity=0.321 Sum_probs=372.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~ 1588 (2256)
.|+++.||.....+.......-+......+.|..-+.++...
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-------------------------------------- 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-------------------------------------- 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--------------------------------------
Confidence 788888888877777666554444444444444444433211
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc
Q 000098 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1589 ~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~ 1668 (2256)
+..+|.......+.++... ...+ +-...++..+...+..|.+.+|.+...|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d--~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVD--PRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccC--cchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 2234444444445555432 2122 33345788888889999999999999999999877655445567777777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcHhHH--HHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHh
Q 000098 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1669 ~~~~~~R~~aa~~L~~i~~~~g~~~l--~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~ 1745 (2256)
......|.+++.+++.+..+.|...+ ..++..+.....+.+ ...|+.+..++......+|..|+||+-.++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 46677899999999999999887755 457777877777764 455667888999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcc
Q 000098 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2256)
Q Consensus 1746 L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~ 1825 (2256)
+.|..+.||.+|..+.+.++..+...++..++|.+...+.+..|+....+++++|.+.++.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999988999999999999988899999999999998865421
Q ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 000098 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQV 1904 (2256)
Q Consensus 1826 ~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~ 1904 (2256)
..+.. ...++++.+...+.|+...||.++..++..+..... ..+.+++|.+++.+ ++++..+. .
T Consensus 287 -----~qLs~-----~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l----~dp~~~~~-e 351 (569)
T KOG1242|consen 287 -----KQLSL-----CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL----ADPSCYTP-E 351 (569)
T ss_pred -----HHHHH-----HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----cCcccchH-H
Confidence 11111 234677777788999999999999999887765432 34666666666554 66652221 1
Q ss_pred HHHHHH--HHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhh-ChhhhHhhHhhHHHHHHHHhcCCCHHH
Q 000098 1905 AGRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEV 1981 (2256)
Q Consensus 1905 A~~aL~--~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~-~~~~l~~~l~~li~~l~~~L~D~~~~V 1981 (2256)
+...|+ .++..+.+..+.-++|.+.+++.+.+...+..++..++.+..-. .+..+.+|++.++|.+...+.|..|+|
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 222222 22334445568889999999999888888888887777777666 567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc---hHHHHHHHHHHHhhhcccchhhhhhhhhcC----c----hh
Q 000098 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHL----P----LS 2050 (2256)
Q Consensus 1982 R~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~---~~~al~~L~~il~~~~~~~lp~li~~L~~~----p----~~ 2050 (2256)
|..|+.+++.+.+..|...+++.+|.+.+.+.++.. ...+.+++.++++.-....+-.++|.+... - +.
T Consensus 432 R~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~ 511 (569)
T KOG1242|consen 432 RAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIR 511 (569)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhc
Confidence 999999999999999999999999999999876543 235566677776543222222223322211 1 11
Q ss_pred hhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHH
Q 000098 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKE 2096 (2256)
Q Consensus 2051 ~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~ 2096 (2256)
......+..+....|..+.+|+..+++.+.+.+.+.++..|..+.+
T Consensus 512 dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 512 DGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred cCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhh
Confidence 1112234445556678888899999999988888777666655443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-17 Score=216.08 Aligned_cols=530 Identities=17% Similarity=0.236 Sum_probs=360.0
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
...+...+.+++.+.++..|+++|.++-.+...++..+...-..+.+...+..++.|.+.-++..|.+.+|-+.+--+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 44566778888999999999999999888887777666777788889999999999999999999999999877644444
Q ss_pred chHHHHHHHHHHhhcCCCH--------HH-------------HHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC-CHH
Q 000098 1654 NFPDLVSWLLDALKSDNSN--------VE-------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS 1711 (2256)
Q Consensus 1654 ~~~~lip~Ll~~L~~~~~~--------~~-------------R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~-~~~ 1711 (2256)
.-..++..|+++|...+.. ++ ....-+-+..++..+|. +.++-.+++..++. .|.
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q---PdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ---PDLVYKFMQLANHNATWN 972 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC---hHHHHHHHHHhhhhchhh
Confidence 4567888888888752111 00 00111223334444443 35666777877765 899
Q ss_pred HHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---hhccchhchHHHHHhhcCCCC
Q 000098 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDN 1788 (2256)
Q Consensus 1712 vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~---~~~~~~~~llp~L~~~l~d~~ 1788 (2256)
.|.++...|+.++...|+..+||+.+++|.+...--||+..|+.+....+..++.. .-++++..++.+|..++.+..
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999877777766532 223345668889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000098 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868 (2256)
Q Consensus 1789 ~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l 1868 (2256)
||+|.+++-++.+++.. . + .+ .+.+ ...+++..+++.+.|....||++|-.+.
T Consensus 1053 wRVReasclAL~dLl~g---~-----------~----~~----~~~e-----~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQG---R-----------P----FD----QVKE-----KLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred HHHHHHHHHHHHHHHcC---C-----------C----hH----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999732 0 0 11 1122 2247888899999999999999988776
Q ss_pred HHHHhcC--------hhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCC
Q 000098 1869 KTIVANT--------PKTLKEIMPVLMNTLIS-SLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1869 ~~l~~~~--------~~~l~~~l~~Ll~~L~~-~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~ 1936 (2256)
..+..-+ +..-++++..++|.+.. ...+.-.++|..+..++-++++..|.. +.++++|.+.+.+..-.
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc
Confidence 6654422 12233444444444431 122444566666666666666655543 45566665555443322
Q ss_pred hhhHH-hHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1937 ASRRQ-GVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1937 ~~vR~-~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
+.+-. -+|.... .....+...+....-..|. .++++.+..+.....+++++|.+.+.++..
T Consensus 1186 ~~vLnYls~r~~~-------------~e~ealDt~R~s~aksspm-----meTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1186 PQVLNYLSLRLIN-------------IETEALDTLRASAAKSSPM-----METINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred hHHHHHHHHhhhh-------------hHHHHHHHHHHhhhcCCcH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 22211 1111100 0011122221111111111 123444444444555556666665555443
Q ss_pred CchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHH
Q 000098 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK 2095 (2256)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~ 2095 (2256)
-. .+.+...+..+..|+.-.|..+.||...++.+++..+.+.++.+|....
T Consensus 1248 Vg-----------------------------l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1248 VG-----------------------------LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred CC-----------------------------CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHH
Confidence 11 1112245666777788899999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCC---ChHHHHH
Q 000098 2096 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS---DSTTVAA 2172 (2256)
Q Consensus 2096 ~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~---d~~Vr~~ 2172 (2256)
.|++.++....++.+..++..++..+-.+....+..++..+-.+..+...-+..|...++|..+-.+.+. +.+.++-
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~d 1378 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWND 1378 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999987777788888877777644444444677777777777777788899999999888766544 4567888
Q ss_pred HHHHHHHh
Q 000098 2173 AWEALSRV 2180 (2256)
Q Consensus 2173 A~~aL~~l 2180 (2256)
.|..+...
T Consensus 1379 vW~e~vsg 1386 (1702)
T KOG0915|consen 1379 VWAELVSG 1386 (1702)
T ss_pred HHHHhCCC
Confidence 88776543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-19 Score=207.65 Aligned_cols=667 Identities=15% Similarity=0.155 Sum_probs=426.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccC-CcchHHHH
Q 000098 1225 LADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 1302 (2256)
Q Consensus 1225 l~D~~~~VR~~a~~a~~~~i~~~g~~-~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~-~~~i~~il 1302 (2256)
..+.+...|..++.....-...+|+. .++.++|++.+.- .+|.-|+..+..+..+-..++.. .|+++.++
T Consensus 177 vKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~--------LeDqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 177 VKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRE--------LEDQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred cccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--------hhhhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 45566667777665544433344443 3567777764430 12234666777776666555432 35555443
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHH
Q 000098 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~ 1382 (2256)
--.-..+-+++..++...-+.+..+++..+-. ..+..+=..+ .+.+.-+|...+.+.+.+++.+|.. .++|+
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llpf 320 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLPF 320 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHHH
Confidence 33333445666665543333444444443211 1111111112 3345789999999999999999853 67889
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH---HhH
Q 000098 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 1459 (2256)
Q Consensus 1383 L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v---~~i 1459 (2256)
+.....+.++|+.|+.++.+...||..+|...-+|+..++..+-.++.|....||..++.++..++....++++ +.+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 99888888899999999999999999999988999999999999999999999999999999999998888765 677
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhh-ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hh--
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE-- 1534 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~-~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~-- 1534 (2256)
+.+++++....--.+-.+-+.+.|.+... .|+.....-.+....+...++.++.+........... |...+. |+
T Consensus 401 l~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~-C~~v~~~tp~~l 479 (975)
T COG5181 401 LCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERI-CDKVGTDTPWKL 479 (975)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHH-HhccCCCCHHHH
Confidence 88888877643222222233444443332 2333333334555555566665555544433322222 222211 21
Q ss_pred HHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
..++.|.+....-. -|.| .|+ +... ....-..+++..++
T Consensus 480 r~~v~pefF~~fw~----rr~A-----------------------------~dr~~~k~---v~~ttvilAk~~g~---- 519 (975)
T COG5181 480 RDQVSPEFFSPFWR----RRSA-----------------------------GDRRSYKQ---VVLTTVILAKMGGD---- 519 (975)
T ss_pred HHhhcHHhhchHHH----hhhc-----------------------------ccccccce---eehhHHHHHHHcCC----
Confidence 13333333221100 0000 000 0000 00111122332233
Q ss_pred hhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH--
Q 000098 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL-- 1686 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~-- 1686 (2256)
+.+...+.+.+.|+...-|..++.+...+...+|.. .-..++..++..++.+.... .-...+++.+.
T Consensus 520 ----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~--~~il~~f~tv~vs 593 (975)
T COG5181 520 ----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV--GLILPCFSTVLVS 593 (975)
T ss_pred ----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc--cEEEecccceeee
Confidence 235667777788888888888888888887777633 12345566666666533221 11122334333
Q ss_pred -HHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1687 -AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1687 -~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
...|+.++..++..++..++++.+.+|..++...+.++..+.. ++ ..+..+=..+...+..+.++|--..+.|+..
T Consensus 594 l~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 594 LEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICS 672 (975)
T ss_pred hhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 2345668899999999999999999999999999988876542 11 3445555667888888889998888899888
Q ss_pred HHHHhhcc----chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcc
Q 000098 1764 LVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839 (2256)
Q Consensus 1764 iv~~~~~~----~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~ 1839 (2256)
|....+-+ .+..++|.+...+.+.+.++....+.++|.+....+. -.|.
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe---------------------------yi~~ 725 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE---------------------------YIGV 725 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc---------------------------cCCH
Confidence 87766544 3556899999899999999999999999988632110 0111
Q ss_pred hhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc
Q 000098 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2256)
Q Consensus 1840 e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2256)
..+-++--.|...+...+.++|..|...|+.+....++ ++++..|++. |...+-..|....-+++-+.+.+|.-
T Consensus 726 rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--qdvL~~Llnn----LkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 726 REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--QDVLDILLNN----LKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--HHHHHHHHhc----chHHHHHhhhhhhhhhhhhHhhcCch
Confidence 11223333344445566788999999999988876654 2445555444 45556667777777888888877763
Q ss_pred chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000098 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2256)
Q Consensus 1920 ~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l 1992 (2256)
.++|.|..-...++.++++|+..+++.+.+..|.. -.+|.-.+.|.+..++.|.|+.-|+.|...+..+
T Consensus 800 ---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 800 ---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred ---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 46777877777888999999999999888887754 4578999999999999999999998876544444
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-15 Score=213.65 Aligned_cols=644 Identities=15% Similarity=0.116 Sum_probs=407.5
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCC-Cc-H------HHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHh
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYP-DS-I------QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSA 1204 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~-~~-~------~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l 1204 (2256)
+.|++.|.+.+...|+.++.+|..+..... |. . ...++.|....... ....--.+..+..+|.++
T Consensus 102 ppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g-------sk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 102 PPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG-------NKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC-------chhhHHHHHHHHHHHHHH
Confidence 567788888889999999999998875421 11 0 12334444432110 001112344556788888
Q ss_pred hhhhccCC---h-hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhc--ccc--ccchHHHHHHHhhccCCChhhhhhh
Q 000098 1205 ADVLRTKD---L-PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RDN--VSLLFPIFENYLNKKASDEEKYDLV 1276 (2256)
Q Consensus 1205 ~~~~~~~~---~-~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g--~~~--~~~Ll~~l~~~L~~~~~~~~~~~~v 1276 (2256)
+..-++.. . ...+..++ ..+.+.++.++..++.+...+....+ .+. -...+|.|-++|... . +..+
T Consensus 175 s~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg-~----~~~V 248 (2102)
T PLN03200 175 CGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG-N----EVSV 248 (2102)
T ss_pred hcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-C----ChHH
Confidence 76543311 0 12344443 46678889999888776554443221 111 134578888887541 1 1258
Q ss_pred hhHHHHHHHHHHhhhccCCcch--HHHHHHHHHHcCCCCHH---------HHHHHHHhhHHhHHhhcCchHHHHHHHHHH
Q 000098 1277 REGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ 1345 (2256)
Q Consensus 1277 r~~av~~L~~La~~l~~~~~~i--~~il~~Ll~~L~~~~~~---------Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~ 1345 (2256)
|+.++-.|+.|+.+-+.....+ ...++.|+..+..|+.+ .++.+.-+|..+.... ..+++.|-+.
T Consensus 249 RE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L~~l 324 (2102)
T PLN03200 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYLGEL 324 (2102)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHHHHh
Confidence 8999999999997521100000 12356777777766643 3666667777665332 3445544444
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCccc-----chhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC-chHh--
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISS-----LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPY-- 1417 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~-----~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~-~~py-- 1417 (2256)
+.+..+...--.+..+++.++....... +....+.+.|.+.+.+++..-..+.+..++..+ ++.. +...
T Consensus 325 l~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl---~gN~~l~~~L~ 401 (2102)
T PLN03200 325 SESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL---YGNAYLSRKLN 401 (2102)
T ss_pred hcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh---cCChHHHHHHH
Confidence 4333344433344455555544332111 111235567777777664333344444444222 2210 0011
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
-.+..+.++..+.-.+.+++..+.+++..+...-... .+ ...+|.+++.|.+.+...+..++..++.++...+++.
T Consensus 402 ~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 402 HAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 1235566777777778899999999998887542221 12 3468999999999888999999999999987665432
Q ss_pred hh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-h-hH--HhHHHHHHhhhCCCChhHH-HHHHHHHhccccc
Q 000098 1494 SQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN 1567 (2256)
Q Consensus 1494 ~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~-~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~ 1567 (2256)
.. .-...+|.|+++|..+++++|+.|+++|.+++..-.+ . .+ ...+|.|++.+.+.+...+ .++.+|.+.....
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 21 1237899999999999999999999999999874211 1 23 2578889999988876665 4666665422211
Q ss_pred CCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hh--hhhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~--l~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
+. ..++.+...+...++.++..+...++++.... +..+.. .. ...-++.|..++.+++..+++.|+.+|.
T Consensus 562 --d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~-~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 562 --DA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVA-SLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLA 634 (2102)
T ss_pred --ch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc-chhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 13355667788888899998999999887743 222211 10 2357899999999999999999999999
Q ss_pred HHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-H-HHHHHHHHHhccCCCHHHHHH
Q 000098 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-F-EHILPDIIRNCSHQRASVRDG 1715 (2256)
Q Consensus 1645 ~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l-~~ll~~ll~~l~~~~~~vR~~ 1715 (2256)
.++..-.+. .....+|.++..|.+ .+..++..++++|+.+......+ + . .+.+|.+++.+.+.+..+++.
T Consensus 635 nL~a~~~d~~~avv~agaIpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~ 713 (2102)
T PLN03200 635 DIFSSRQDLCESLATDEIINPCIKLLTN-NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQ 713 (2102)
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence 998632221 234578888898887 45558899999999988643322 1 1 457899999999999999999
Q ss_pred HHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc-h------hchHHHHHhhcCCCC
Q 000098 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFNDN 1788 (2256)
Q Consensus 1716 al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~-~------~~llp~L~~~l~d~~ 1788 (2256)
++.++..++......-.-.-...++++...+.+.++.+|+.|..++..+...+..+. + .-.+..|.+.+...+
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~ 793 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999988765332111224678999999999999999999999998887655332 1 124556666665555
Q ss_pred HHHHH--HHHHHHHHHHH
Q 000098 1789 WRIRQ--SSVELLGDLLF 1804 (2256)
Q Consensus 1789 ~~iR~--~sv~llg~ll~ 1804 (2256)
.+.-. .+++.+..+..
T Consensus 794 ~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 794 LDSSATSEALEALALLAR 811 (2102)
T ss_pred cchhhHHHHHHHHHHHHh
Confidence 44433 36666666653
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-17 Score=231.29 Aligned_cols=793 Identities=15% Similarity=0.152 Sum_probs=504.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--c--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-c----
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E--APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-I---- 1371 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~--~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g-~---- 1371 (2256)
.++.|+..|..++..+|..++.++..+...-.. . ....++.++..|... +...|..|+.+|..+..... +
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 468888889888888998777666655432110 0 134566777766544 68999999999999886531 1
Q ss_pred ccchhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 000098 1372 SSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMM 1448 (2256)
Q Consensus 1372 ~~~~~~~il~~L~~~l~~~--~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~ 1448 (2256)
..+.....+|.|.+.+++. ++...++.+..++..++..-+......+ ...+|.+...+.++++.++..|..++..++
T Consensus 138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La 217 (2102)
T PLN03200 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM 217 (2102)
T ss_pred hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1121246788888888764 2333455556777777754432212212 247899999999999999999998888777
Q ss_pred hhhhH--hhH--HhHHHHHHHhccC-CChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCH---------
Q 000098 1449 SQLSA--QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHP--------- 1513 (2256)
Q Consensus 1449 ~~l~~--~~v--~~ilp~Ll~~L~~-~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~--------- 1513 (2256)
...+. ..+ ...+|.+++.+.+ .+...|..|+.+|+.++.+.++.-.... ...+|.|++++..++.
T Consensus 218 ss~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~ 297 (2102)
T PLN03200 218 MAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQ 297 (2102)
T ss_pred cCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccch
Confidence 65432 222 3568999999975 5668999999999999987655422111 2567888888765443
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhH--HHHHHHHHhc-ccccCCChh--hH--hhHHHHHHHhhc
Q 000098 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT--KYSLDILLQT-TFVNTVDAP--SL--ALLVPIVHRGLR 1586 (2256)
Q Consensus 1514 ~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~v--r~al~~L~~~-~~~~~~~~~--~l--~~i~p~L~~~L~ 1586 (2256)
..++.|.|+|++++... ..++|.|.+.+..+.+.. ..++.++... ......+.. .+ ..+.+.+.+.++
T Consensus 298 ~Lqe~AvwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr 372 (2102)
T PLN03200 298 ALQENAMGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLK 372 (2102)
T ss_pred HHHHHHHHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhC
Confidence 45899999999999654 456666666665443222 1122222110 000000000 00 234577888888
Q ss_pred CCCHHH-HHHHHHHHHHHhhhcCCCCcchh--hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHH
Q 000098 1587 ERSAET-KKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLV 1659 (2256)
Q Consensus 1587 d~~~~v-R~~a~~~l~~L~~~l~~~~~l~~--~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~li 1659 (2256)
++++.. +..+..++..+. +++. +.. +-...++.|..++...+.++|..++.+|..++..-.+. .-...+
T Consensus 373 ~k~p~~vqe~V~eALasl~---gN~~-l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggI 448 (2102)
T PLN03200 373 PRDTKLVQERIIEALASLY---GNAY-LSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGV 448 (2102)
T ss_pred CCCCchhHHHHHHHHHHhc---CChH-HHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcH
Confidence 776553 555555554332 2210 000 11235667788888888999999999999988542111 012368
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl 1735 (2256)
|.|.+.|.++ +...+..++..++.+..+...... .+.+|.+++.+.+++..+|+.++++++.++.. .++....+
T Consensus 449 p~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV 526 (2102)
T PLN03200 449 QLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACV 526 (2102)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 8999999874 456788888888887654333211 46889999999999999999999999999873 33444444
Q ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccc
Q 000098 1736 --QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2256)
Q Consensus 1736 --~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~ 1813 (2256)
...+|+++..+.+.+..+++.|+.++..+......+ .++.+...+..++.++...+++.+|.++....
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~------ 596 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA----TISQLTALLLGDLPESKVHVLDVLGHVLSVAS------ 596 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc------
Confidence 258999999999999999999999998887643333 44666666766777777778888888753110
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHH-HHHHHHHHHHH
Q 000098 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE-IMPVLMNTLIS 1892 (2256)
Q Consensus 1814 ~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~-~l~~Ll~~L~~ 1892 (2256)
.+ +. . ..... .+..++.|...+...+..+++.|..++..++.+.+..... +....++.++.
T Consensus 597 ------~~-d~----~-~~g~~------~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 597 ------LE-DL----V-REGSA------ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658 (2102)
T ss_pred ------hh-HH----H-HHhhh------ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH
Confidence 00 00 0 00000 0123455555666677889999999999998866553322 22334555566
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhCcc-----chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhh-HhhH
Q 000098 1893 SLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDEL 1966 (2256)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~-l~~l 1966 (2256)
.+.+.+.+++..++++|+.+....... .-...+|.|.+.+.+.+..++..++.+|+.+....... ... -...
T Consensus 659 LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~--~ei~~~~~ 736 (2102)
T PLN03200 659 LLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA--AEALAEDI 736 (2102)
T ss_pred HHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH--HHHHhcCc
Confidence 668889999999999999999733222 22457888999999988999999999998887654221 111 2456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh-H------HhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhh
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-I------DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~-~------~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~ 2039 (2256)
++.+.+.+.+.++++|+.|+.++..+++...... + ...+..|...|+..+....
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~------------------- 797 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS------------------- 797 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh-------------------
Confidence 8899999999999999999999999987543221 1 1234455555554332100
Q ss_pred hhhhhhcCchhhhHHHHHHHHHHHh-CCCcc--cc-----HhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc----ch
Q 000098 2040 ILPKLVHLPLSAFNAHALGALAEVA-GPGLN--FH-----LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI----DE 2107 (2256)
Q Consensus 2040 li~~L~~~p~~~~~~~aL~~La~~~-g~~l~--~~-----l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~----~~ 2107 (2256)
.....+.++..++..- |..+. |+ .+.=+.+|+.++.+.++.+++.+++.+..+|.-- ++
T Consensus 798 ---------~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~ 868 (2102)
T PLN03200 798 ---------ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGD 868 (2102)
T ss_pred ---------hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHH
Confidence 0001233444444321 11111 11 1223566777788888999999999999999732 11
Q ss_pred --hcHHHHHHHHHhh-cCCCChhhHHHHHHHHHHHHHhch------hhhhhhHHHHHHHHHHHcC
Q 000098 2108 --EGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSK------LYLVDEAPNMISTLIVLLS 2163 (2256)
Q Consensus 2108 --~~~~~ll~~Ll~~-l~~~~~~vR~~A~~~l~~l~~~~~------~~~~~y~~~il~~L~~~l~ 2163 (2256)
...+.-+..|-.. +++.++++|.+....+-.-++... .+-+.|...++..++.++.
T Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (2102)
T PLN03200 869 LIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLK 933 (2102)
T ss_pred HHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 0011112222222 356778888887766544443321 2345578888888888774
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-18 Score=200.56 Aligned_cols=714 Identities=15% Similarity=0.149 Sum_probs=454.6
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~ 1506 (2256)
..++.....|..+...+..=..+.++..+ ..++|.+++.--++ +.|+-.+..+..+.+...+...++...|+=.+-.
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeD--qerhl~vk~idr~Ly~lddl~~pyvhkILvVv~p 253 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELED--QERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGP 253 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhh--hhhHhHHHHHHHHHHhcccccccceeeEEEEeec
Confidence 45677778888877766665555555544 77888777653332 3567778888888888776666666666655667
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH----HHHHHhcccccCCChhhHhhHHHHHH
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS----LDILLQTTFVNTVDAPSLALLVPIVH 1582 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a----l~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2256)
++-|+++.+|....+.+.+++...+= ...+..+-.-+...++++|+. ....+. .-.+..++|.+.
T Consensus 254 llided~~~r~~g~eii~nL~~~~Gl---~~~vs~mrpDi~~~deYVRnvt~ra~~vva~--------algv~~llpfl~ 322 (975)
T COG5181 254 LLIDEDLKRRCMGREIILNLVYRCGL---GFSVSSMRPDITSKDEYVRNVTGRAVGVVAD--------ALGVEELLPFLE 322 (975)
T ss_pred cccCccHHHhcccHHHHHHHHHHhcc---ceeeeeccCCcccccHHHHHHHHHHHHHHHH--------hhCcHHHHHHHH
Confidence 78899999998888888888776542 112222222234445677642 222221 123456788888
Q ss_pred HhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc---CchHHH
Q 000098 1583 RGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDL 1658 (2256)
Q Consensus 1583 ~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~---~~~~~l 1658 (2256)
....++ +|+-|..+..++..+|.+++. ...+|+..++.++..++.|.+..||-.++.+++.+++..|+ +.|+.+
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 888876 999999999999999987653 46789999999999999999999999999999999998875 367888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1659 ip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
+..|.+..++.... .-..-..+.+-++.-+.++|. .+.+..+...+.+++...+..........+.+-+..-..+
T Consensus 401 l~pLw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~l 479 (975)
T COG5181 401 LCPLWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKL 479 (975)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHH
Confidence 88888877764332 223333445555544455533 6677778888888877777665544433333333333334
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH---------HHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1735 LQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~~VR~~Al---------~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
.+++.|.+++..-. |..|. .+-..+.+..+ -+.+...+.+...|+...-|...+.+...+...
T Consensus 480 r~~v~pefF~~fw~-----rr~A~dr~~~k~v~~ttvilAk~~g---~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~ 551 (975)
T COG5181 480 RDQVSPEFFSPFWR-----RRSAGDRRSYKQVVLTTVILAKMGG---DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSR 551 (975)
T ss_pred HHhhcHHhhchHHH-----hhhcccccccceeehhHHHHHHHcC---ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHh
Confidence 55666666543311 11111 00001111111 112222333333343333333333333222211
Q ss_pred hcCCCcccc-cc---------CCCCCC-Ccch-HHHHHH---HHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000098 1806 VAGTSGKAL-LE---------GGSDDE-GAST-EAHGRA---IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1870 (2256)
Q Consensus 1806 ~~g~~~~~~-~~---------~~~ed~-~~~~-e~~~~~---l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~ 1870 (2256)
+ |..+-.+ .+ ...+++ ..+. -..... -.+..|..+...+++.+...+......||+.|+...+.
T Consensus 552 l-g~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~s 630 (975)
T COG5181 552 L-GRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGS 630 (975)
T ss_pred c-ccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 1 1100000 00 000000 0000 000000 01223444556678887778888888999999988777
Q ss_pred HHh---cChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHhhhcCCCChhhHHhH
Q 000098 1871 IVA---NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGV 1943 (2256)
Q Consensus 1871 l~~---~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~l~d~~~~vR~~a 1943 (2256)
++. +++++ +.+..+=..+.+.++...+++--....++..+...++-+ ....++|.|...+++....+..+.
T Consensus 631 l~~vlk~c~e~--~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nt 708 (975)
T COG5181 631 LAKVLKACGET--KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANT 708 (975)
T ss_pred HHHHHHhcchH--HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhH
Confidence 654 44432 345555566777888888998888888888888776543 345666666666665555555555
Q ss_pred HHHHHHHHHhhChhhh--HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHH
Q 000098 1944 CIGLSEVMASAGKSQL--LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA 2021 (2256)
Q Consensus 1944 ~~aL~eii~~~~~~~l--~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~a 2021 (2256)
..-++.|.. .+++.. .++ -.+.-.+...+..-+.++|.+|..+||.+.+.+|+. +++..|++.|+..+.....
T Consensus 709 i~lvg~I~~-~~peyi~~rEW-MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqeRq~Rv 783 (975)
T COG5181 709 IALVGTICM-NSPEYIGVREW-MRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQERQQRV 783 (975)
T ss_pred HHHHHHHHh-cCcccCCHHHH-HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHHHHhhh
Confidence 544554443 333321 122 224444556667778899999999999999999985 5778889888876543322
Q ss_pred H-----HHHHHHHhhhcccchhhhhhhhhcCchh--hhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHH
Q 000098 2022 L-----DGLKQILSVRTTAVLPHILPKLVHLPLS--AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLA 2094 (2256)
Q Consensus 2022 l-----~~L~~il~~~~~~~lp~li~~L~~~p~~--~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a 2094 (2256)
. .-..+.++. -.++|.++..+.+|... .-.++++..+++..|.+-..|+..|.|.|-.++.|.|..-|+.+
T Consensus 784 ctsvaI~iVae~cgp--fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta 861 (975)
T COG5181 784 CTSVAISIVAEYCGP--FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTA 861 (975)
T ss_pred hhhhhhhhhHhhcCc--hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHH
Confidence 2 223333322 34677777666555432 23467888888999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc----hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHH
Q 000098 2095 KEAAETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2256)
Q Consensus 2095 ~~al~~l~~~~~----~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr 2170 (2256)
...+..+...+. ++.+-.+++.|...+-+++|.+-++..+++-.|.+..+.. .++..+.+.|-.|...||
T Consensus 862 ~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VR 935 (975)
T COG5181 862 MNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVR 935 (975)
T ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHH
Confidence 999999998763 3556778888888888999999999888888887755432 345566777888999999
Q ss_pred HHHHHHHHHhh
Q 000098 2171 AAAWEALSRVV 2181 (2256)
Q Consensus 2171 ~~A~~aL~~l~ 2181 (2256)
+.-|..++.+.
T Consensus 936 k~ywtvyn~my 946 (975)
T COG5181 936 KRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHhhhh
Confidence 99999888764
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-16 Score=183.74 Aligned_cols=704 Identities=16% Similarity=0.151 Sum_probs=439.6
Q ss_pred cCchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000098 1332 QDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l 1410 (2256)
..++..++..+.+.|.+.+ ....|..|+..|..-+..- ++....+.-.-| .
T Consensus 34 ~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~----------------------d~~~~~~~~qrW------~ 85 (858)
T COG5215 34 SGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHAN----------------------DPELQKGCSQRW------L 85 (858)
T ss_pred cccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcC----------------------CHHHHHHHHHhh------c
Confidence 4567777777777777654 4677877766654322211 222222111111 1
Q ss_pred ccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh-hhHhhHHhHHHHHHHhccCCCh-hHHHHHHHHHHHHHh
Q 000098 1411 GRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAY 1487 (2256)
Q Consensus 1411 ~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~-l~~~~v~~ilp~Ll~~L~~~~w-~~R~~a~~~Lg~la~ 1487 (2256)
+ +.+-. .++-...+..++.+++..-..|.+.+..|+.. ++...++.++..+.....+.++ ..+..++..+|.+++
T Consensus 86 ~--~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 86 G--MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred c--CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 1 11111 23444566788889999999999999999875 4444467888888888887655 578889999999998
Q ss_pred hC-hhhHhhhhhhHHHHHHHh-h-cCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhhhCCCChhHHH-HHH
Q 000098 1488 CA-PQQLSQCLPKIVPKLTEV-L-TDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGLTDPNDHTKY-SLD 1558 (2256)
Q Consensus 1488 ~~-p~~l~~~L~~Ivp~L~~~-L-~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~Ll~~l~d~~~~vr~-al~ 1558 (2256)
.. |+.+......++-.++.+ + +.+...||.+|..||..-+..+++ .+...++....++.+.++..+.. +..
T Consensus 164 s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafg 243 (858)
T COG5215 164 SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFG 243 (858)
T ss_pred ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHH
Confidence 74 666666656666555443 3 467789999999999873333322 23355666667777777777763 333
Q ss_pred HHHh-----cccccCCChhhHhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh---------------
Q 000098 1559 ILLQ-----TTFVNTVDAPSLAL-LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--------------- 1617 (2256)
Q Consensus 1559 ~L~~-----~~~~~~~~~~~l~~-i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l--------------- 1617 (2256)
.+.+ .+|+. +.+.. +.....+++++.+.++...+.+.+..+|+--.+..-...|+
T Consensus 244 Cl~kim~LyY~fm~----~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav 319 (858)
T COG5215 244 CLNKIMMLYYKFMQ----SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAV 319 (858)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHH
Confidence 3332 12222 22222 23445567888999999999999988886311211111222
Q ss_pred hhhhHHHHHhhc-------CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1618 GLLLPEVKKVLV-------DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~-------d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g 1690 (2256)
..++|.+++++. +.+|.+..+|..||..++...|+..+..++.++-+.+++ +++..|..++.++|.+..+-.
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~-~~w~nreaavmAfGSvm~gp~ 398 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS-ESWANREAAVMAFGSVMHGPC 398 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC-chhhhHHHHHHHhhhhhcCcc
Confidence 347888888775 357999999999999999999988888888888888887 677789999999999987655
Q ss_pred Hh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1691 TV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1691 ~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~--yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
+. +..+.+|.+.....|+.-.+++.+.+|||.++......+.| |+.......+.++.|. +.+-.+..++...+
T Consensus 399 ~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nl 477 (858)
T COG5215 399 EDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENL 477 (858)
T ss_pred HHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhH
Confidence 54 44677788888888888899999999999998776654433 4555556666666653 33334444445555
Q ss_pred HHHhhccc---hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchh
Q 000098 1765 VEHYATTS---LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2256)
Q Consensus 1765 v~~~~~~~---~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~ 1841 (2256)
+.++.+.. .+.+-| +
T Consensus 478 v~h~a~a~~~~~S~l~~--------------------------------------------------------------f 495 (858)
T COG5215 478 VDHIAKAVREVESFLAK--------------------------------------------------------------F 495 (858)
T ss_pred HHhhhhhhccccchhHH--------------------------------------------------------------H
Confidence 55443221 000000 0
Q ss_pred hHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC---------------CHHHHHH
Q 000098 1842 RNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS---------------SSERRQV 1904 (2256)
Q Consensus 1842 ~~~vl~~L~~~--~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~---------------~~~~R~~ 1904 (2256)
+..++..|... +.+...+.|.++.++++.++..+|..+.+++..+.+.+.+.+... ..+++..
T Consensus 496 Y~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN 575 (858)
T COG5215 496 YLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSN 575 (858)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 11111222111 122234456666666666666666555555555444443332211 2345555
Q ss_pred HHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChhhH-HhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHH
Q 000098 1905 AGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2256)
Q Consensus 1905 A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~vR-~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~ 1980 (2256)
....|..+++..+.+ +-+.++..+.+.+...++.+- ..+..+++.+..+.+. .++.|.+.++|.+.+.+...+.-
T Consensus 576 ~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e-~Fe~y~~~fiPyl~~aln~~d~~ 654 (858)
T COG5215 576 YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEE-RFEQYASKFIPYLTRALNCTDRF 654 (858)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHhcchhHH
Confidence 666777788877764 345577777777766555443 3466777777776654 57889999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhchh---hHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHH
Q 000098 1981 VRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057 (2256)
Q Consensus 1981 VR~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL 2057 (2256)
|...|....|.+...+|.+ +.+.++..|.++|.++... +.+-| ..+.++
T Consensus 655 v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~---------------R~lKP-------------aiLSvF 706 (858)
T COG5215 655 VLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATH---------------RDLKP-------------AILSVF 706 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhc---------------cccch-------------HHHHHH
Confidence 8888888888888887753 4566777777777665321 11222 245778
Q ss_pred HHHHHHhCCCccccHhhHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHH
Q 000098 2058 GALAEVAGPGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135 (2256)
Q Consensus 2058 ~~La~~~g~~l~~~l~~Ilp~Ll~~l~~--~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~ 2135 (2256)
+-++...|..|.+|+..|+-.+...-+- .+.++ ++..+...++++. ..|+-.
T Consensus 707 gDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~------------------~~~dy~~~~~~~v--------~~ayVg 760 (858)
T COG5215 707 GDIALAIGANFESYLDMIMMLFQQASELDPHSDEV------------------YVDDYRKNAVQLV--------NCAYVG 760 (858)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCce------------------eHHHHHHHHHHHH--------HHHHHH
Confidence 8888899999999999988777665321 11110 0011111011000 012222
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHhhccCCCCc
Q 000098 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS--TTVAAAWEALSRVVASVPKEV 2188 (2256)
Q Consensus 2136 l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~--~Vr~~A~~aL~~l~~~l~~e~ 2188 (2256)
|+.-.++-...+.||+..+...+-..-.|++- ...++|.+-++.++...|+..
T Consensus 761 I~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkge 815 (858)
T COG5215 761 IGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGE 815 (858)
T ss_pred hhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcc
Confidence 33333333344667777776655445567753 455788888999988888763
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-18 Score=220.50 Aligned_cols=556 Identities=21% Similarity=0.259 Sum_probs=405.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc
Q 000098 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2256)
Q Consensus 1350 ~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l 1429 (2256)
++..-|..+..-+..+....|.... ...++|++.+.. +. +.++.+.+..-|+.+....|. ..|..-++|.+....
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~ 168 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLA 168 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhh
Confidence 3456677777777777777776655 457999999888 33 455555555545444443331 233445677777788
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHH-HHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh
Q 000098 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK-QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2256)
Q Consensus 1430 ~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R-~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L 1508 (2256)
.+....||+++.+.+..+...++.......+-+++..+...+|+.. ..++..++..+...++...+ .++.|...++.
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk--~elr~~~~~lc 246 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK--RELRPIVQSLC 246 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH--HHHHHHHHhhc
Confidence 8889999999999999998888877765555566666665588864 45778888877777643222 35666777889
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcC
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d 1587 (2256)
+|..+.||.+++.-++.++.++.+... ..++|.+.. ...|
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~---------------------------------------L~~D 287 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQ---------------------------------------LLRD 287 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhh---------------------------------------hhhc
Confidence 999999999999999999987765322 334444444 4444
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-chHHHHHHHHHHh
Q 000098 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDAL 1666 (2256)
Q Consensus 1588 ~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-~~~~lip~Ll~~L 1666 (2256)
....+|..|.....++..++.+.. +....+.+.+++...|++|.+|.........+...+|++ ......+.....+
T Consensus 288 dqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~ 364 (759)
T KOG0211|consen 288 DQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLL 364 (759)
T ss_pred chhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHh
Confidence 444666666666666666543321 445568889999999999999999999999999999875 3345667777777
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHH
Q 000098 1667 KSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2256)
Q Consensus 1667 ~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~ 1741 (2256)
++ ..+..|...+.-...+...+..+ ....++|.+...+.+.+.+||.+.......+...+|. ..-+..+.|.
T Consensus 365 ~~-~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~ 441 (759)
T KOG0211|consen 365 KD-EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPL 441 (759)
T ss_pred cc-hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChh
Confidence 65 45556777776677666655522 3466789999999999999999988877777777763 2455667888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhc---cc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1742 ILDGLADENESVRDAALGAGHVLVEHYAT---TS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1742 Ll~~L~d~~~~VR~~Al~al~~iv~~~~~---~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
.+..++|+.+.||.....-+..+...... .. -+.++|.+.+...|.+||+|.+.++.+..++.
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~------------- 508 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL------------- 508 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH-------------
Confidence 99999999999998877544333322222 22 24488888888888899999999998887742
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHHHHHHHHh
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSL 1894 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~-~~D~~~~Vr~aA~~~l~~l~~~~~--~~l~~~l~~Ll~~L~~~L 1894 (2256)
.+|.+++++.+..+++. +.|....+|++|...+..++...+ +.....+|.++...
T Consensus 509 ------------------q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~---- 566 (759)
T KOG0211|consen 509 ------------------QLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMD---- 566 (759)
T ss_pred ------------------hhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHh----
Confidence 22333444445555554 678888999999999999988766 55666666665543
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~ 1973 (2256)
.++++.+|.+...++..++..+|.+ +-..++|.+.++..|+.+++|.+++..+..++......... ..+.|.+...
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L 643 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETL 643 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHh
Confidence 5668999999999999999999988 56889999999999999999999999999888777654333 4466666666
Q ss_pred hcCCCHHHHHHHHHHHHHHHHH
Q 000098 1974 LCDSILEVRESAGLAFSTLFKS 1995 (2256)
Q Consensus 1974 L~D~~~~VR~~A~~al~~l~~~ 1995 (2256)
..|.+.+||..|..+++.+...
T Consensus 644 ~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 644 SSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred ccCcccchhHHHHHHHHHHHHH
Confidence 7799999999999999988654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-17 Score=210.34 Aligned_cols=552 Identities=20% Similarity=0.227 Sum_probs=395.2
Q ss_pred chhHHHHHHHHHhhhhhccC-ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hhccccccchHHHHHHHhhccCCC
Q 000098 1192 LGRQGIALALHSAADVLRTK-DLPVIMTFLISRALADTNADVRGRMLNAGIMIID-KHGRDNVSLLFPIFENYLNKKASD 1269 (2256)
Q Consensus 1192 ~~R~~~~~aL~~l~~~~~~~-~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~-~~g~~~~~~Ll~~l~~~L~~~~~~ 1269 (2256)
.-|..+..-+..++...+.+ ....+++|+ .++. +.+.+|+..+.+-...+.. .+|+++...+++.++.... +
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~tr~~lipf~-~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~----~ 170 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERTRLELIPFL-TEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLAT----V 170 (759)
T ss_pred hhhhhhhccccchhhhcccchhhhhhhhHH-HHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhH----H
Confidence 34444444444444444333 245577887 5677 8899999888765444443 4556667778888887743 3
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHh-hHHhHHhhc-CchHHHHHHHHHHHh
Q 000098 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSC-LSPLMQSMQ-DEAPTLVSRLLDQLM 1347 (2256)
Q Consensus 1270 ~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~-L~~lv~~~~-~~~~~~l~~Ll~~L~ 1347 (2256)
++. .+|+.+++.+..++..+++.. ....+-.++..+...++.-.+..+.. ......... +....-+...+..+.
T Consensus 171 eet--~vr~k~ve~l~~v~~~~~~~~--~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc 246 (759)
T KOG0211|consen 171 EET--GVREKAVESLLKVAVGLPKEK--LREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLC 246 (759)
T ss_pred HHH--HHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhc
Confidence 444 789999999988887665543 24445555555554444332322211 222222222 345667778888999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~ 1427 (2256)
++..+++|+.++.-++.+++.++.... ...++|.+..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~~-------------------------------------------~s~v~~~~~~ 283 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEIV-------------------------------------------KSEVLPTLIQ 283 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHH-------------------------------------------HhhccHHHhh
Confidence 998999999999988888776642111 1234555666
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhHh-hH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSAQ-GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~~-~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~ 1505 (2256)
...|+...||.+|..++..+...+... .+ +.+.+.+++..+|.+|++|....+....+......+. .-+..++...
T Consensus 284 L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~--~~~~~~~~~~ 361 (759)
T KOG0211|consen 284 LLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA--TRTQLVPPVS 361 (759)
T ss_pred hhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc--CcccchhhHH
Confidence 777888999999999998888877665 43 7788999999999999999987777777666654432 2346678888
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCc---hhH--HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHH
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN---PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i--~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2256)
..++|...++|.++..-...++...+. +.+ +.++|.+.....|.+.++|.+..........-.........+.|.
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~ 441 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPL 441 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChh
Confidence 899999999999999999988887763 222 677899999999999999865543322000000123355667889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHH-HH
Q 000098 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-LV 1659 (2256)
Q Consensus 1581 L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~-li 1659 (2256)
+...+++..+.+|......+..+-. +.+...+..+.+.++|.+..+..|..|++|.+....+..++...|..++.+ +-
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~ 520 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLA 520 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence 9999999999999887665544443 345566677888999999999999999999999999999999888665544 33
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~i 1738 (2256)
+.++..+.+ ..+..|.+++..+..++..+|.+ ....++|.++....++++.+|.+.+.++..++..+|.++ +...+
T Consensus 521 ~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~L 597 (759)
T KOG0211|consen 521 ELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDL 597 (759)
T ss_pred HHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHH
Confidence 333444443 55669999999999999999965 557888999888888899999999999999999999987 77899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchh-chHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1739 lp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~-~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
+|.+..+..|++++||.++++.+..++........+ .+.|.+.....|.+-.+|..+....+.+
T Consensus 598 lp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 598 LPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred hHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 999999999999999999999999998877655443 3667666665565444444455555444
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-13 Score=176.35 Aligned_cols=814 Identities=20% Similarity=0.195 Sum_probs=421.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~ 1414 (2256)
+...+..|.+.+++. .|.+|++++.++.++++..|..... ..++ +--.|....+++ ..+|+
T Consensus 75 f~s~~e~L~~~~~~~-~we~rhg~~i~lrei~~~h~~~~~~--~~le----------d~~~rll~v~~L----drf~d-- 135 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEP-QWEIRHGAAIALREILKTHGDSLSY--ELLE----------DLLIRLLCVLAL----DRFGD-- 135 (1549)
T ss_pred HHHHHHHHHHHhcCc-hhhhhcCcchhhhhHHHHhcchhhH--HHHH----------HHHHHHHHHHHH----HHhcc--
Confidence 456677777777654 5999999999999999988754321 1111 111111111111 11121
Q ss_pred hHhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1415 EPYVIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
| +.| -...||++++++++.+..++....+.+.+..+.+.+....|+.|++.+..+.+......+.+
T Consensus 136 --f-----------isd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l 202 (1549)
T KOG0392|consen 136 --F-----------ISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL 202 (1549)
T ss_pred --c-----------ccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH
Confidence 1 122 24689999999999999999988889999999999998899999998888776665444555
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhhhCCCCh------hHHHHHHHHHhcc
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPND------HTKYSLDILLQTT 1564 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i~~lv~~Ll~~l~d~~~------~vr~al~~L~~~~ 1564 (2256)
...++.+++.++++++|++..||..|...+..+.....+ ..+..++..++..+.+-++ ..+.-++.+....
T Consensus 203 ~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~ 282 (1549)
T KOG0392|consen 203 FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN 282 (1549)
T ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH
Confidence 567788999999999999999999999999888776522 2445666666665543222 1121122111100
Q ss_pred cccCC--ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc--chhhhhhhhHHHHHhh-cCCCHHH----
Q 000098 1565 FVNTV--DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD--MIPYIGLLLPEVKKVL-VDPIPEV---- 1635 (2256)
Q Consensus 1565 ~~~~~--~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~--l~~~l~~Ll~~L~~~L-~d~~~~V---- 1635 (2256)
-+-+. .......++|-+...+++.-..+|..++..+..+.+. .+... -.+.+..++..+.+.+ -++..+.
T Consensus 283 evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~-~~qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~ 361 (1549)
T KOG0392|consen 283 EVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEA-DDQSDSWQIRILGKLFRKIFQILLLESFNEILDLS 361 (1549)
T ss_pred HHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhhhHHHHHHHHHHHHhCCcHHHHHhh
Confidence 00000 0000123455555555555557788888888888774 32222 1222333333333332 2222221
Q ss_pred -----------HHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHh
Q 000098 1636 -----------RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN 1704 (2256)
Q Consensus 1636 -----------R~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~ 1704 (2256)
+..+......+.-.+++.- +.-.+...+.....+.....++..-+ ........ ...........
T Consensus 362 ~~~~v~v~~~~k~a~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~q~~~~~~~~~g-~~~~~~s~-~~~~~~~~~i~ 436 (1549)
T KOG0392|consen 362 EKVWVTVSKIEKTAAAYLLSWIYLLIQPNG---IPLGLVGLLDSGPDWQHQFSALIAKG-YSKEFSSD-KEGLCRKEVIL 436 (1549)
T ss_pred hheeeehHHHHHHHHHHHHHHHHhhhCcCC---ChHhhhhccccCcHHHHHHHHHHhhc-cccccccc-cchhhhhhhhc
Confidence 1111111222222222110 00000001111111111111111111 00000000 00000111111
Q ss_pred ccCC--CHHHHHHHHHH----HHHhHh----hhChhHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhhc
Q 000098 1705 CSHQ--RASVRDGYLTL----FKYLPR----SLGVQFQNYLQQVLPAILDGLAD----ENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1705 l~~~--~~~vR~~al~~----l~~La~----~~g~~f~~yl~~ilp~Ll~~L~d----~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
+..+ +......-+.+ .+.++. +-+..-...++.+...+..-+.. .+..+-....+ +..+......
T Consensus 437 l~~~~~D~~~ls~~il~~~~~~~~~~~~l~~~~~t~~~~~~~~~v~~l~~~l~sks~~~~~~vsi~~~~-w~~~~~~~~~ 515 (1549)
T KOG0392|consen 437 LDSPDEDIVLLSAKILCHAKILGSLDLALEKCDSTIESEELISVVQLLNLPLLSKSYLQNIEVSIVPEE-WAALFPCGTS 515 (1549)
T ss_pred CCCCccchhhhhhhhhcCCcchhHHHHHHHHhhhhhhhccchhHHHhhhhhhhhhhhhhccchhhhHHH-HHHhccccCC
Confidence 1111 11111110000 011110 00000000001111111110100 00000000000 0001000000
Q ss_pred ---cchhchHHHHHhhc--CCCC----------HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHH
Q 000098 1771 ---TSLPLLLPAVEDGI--FNDN----------WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2256)
Q Consensus 1771 ---~~~~~llp~L~~~l--~d~~----------~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~ 1835 (2256)
..-+.+++.+.... .++. -+.|..+=+++..++.. .+....+.. ...++. .......+
T Consensus 516 ~~~~v~~~~L~i~~~~~~vr~~~~~y~e~~~v~~~~~~ec~ell~~l~~~-~~~~~n~~~--l~~~~~----~v~~s~y~ 588 (1549)
T KOG0392|consen 516 PPSEVKPSLLDILKNADIVRDEFLDYDELEVVLTELRNECRELIITLVDV-RRDLPNNEI--LTFDET----DVGGSLYE 588 (1549)
T ss_pred CCccccccHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHh-hccCccchh--eeechh----hhhhhhch
Confidence 00011222222110 0111 23344555555555432 111111100 000000 00000000
Q ss_pred Hh------------cchhhHHHHHHHHHHhcC-CcHHHHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHH
Q 000098 1836 VL------------GRDKRNEVLAALYMVRSD-VSLSVRQAALHV-WKTIVANTPKTLKEIMPVLMNTLISSLASSSSER 1901 (2256)
Q Consensus 1836 ~L------------g~e~~~~vl~~L~~~~~D-~~~~Vr~aA~~~-l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~ 1901 (2256)
.+ +...++.++......... .....|..+.-. ......+.|..+.+++..+++.+. .+.+...
T Consensus 589 ~~~~~~~~~~q~l~~~ss~~~v~~~~~~~k~~~~~~~~~i~s~~a~~~~~~~~~pekl~p~I~plm~tik---~e~n~~~ 665 (1549)
T KOG0392|consen 589 EYSENDFLEKQVLYLDSSRQQVLMTIEILKNRCKLLEIRIKSLLASAVVTFETLPEKLNPIIRPLMETIK---KEENAML 665 (1549)
T ss_pred hhcccccCCchheeecchhhHHHhhHHHHHHHHhhcchhhhhchhhHHHHHhcCchhhhhHHHHHHHHHH---hhhHhHh
Confidence 00 122233344333332111 011122211111 111234578888888888888876 4455667
Q ss_pred HHHHHHHHHHHHHhhCcc---chhchHHHHhhh-cCCCC--hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHH---
Q 000098 1902 RQVAGRALGELVRKLGER---VLPSIIPILSRG-LKDPS--ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT--- 1972 (2256)
Q Consensus 1902 R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~-l~d~~--~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~--- 1972 (2256)
+.++.+++..++..+.+. ...+++...... ..++. |. ++ ...++. .+.+.........
T Consensus 666 q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~--------~~---a~~~~~--~~~~~~~~~s~~~~~~ 732 (1549)
T KOG0392|consen 666 QPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPG--------LG---ASIRSI--HPMVDPLINDYTRMVA 732 (1549)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCc--------cc---cccccc--cccccccccchhhhhc
Confidence 888889988888766432 222333222211 11111 11 00 000000 0001111111100
Q ss_pred -Hh---cCCCH----HHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhh
Q 000098 1973 -AL---CDSIL----EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2256)
Q Consensus 1973 -~L---~D~~~----~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L 2044 (2256)
.+ .++.. --|+.|..++..+.+.+|...+. -+|.|+++|-..- .+..... +..+
T Consensus 733 ~~~~~g~eea~~~~~~errgael~L~~l~~~fg~sl~~-klp~l~~~L~~~L---------~~~~~~~-d~~~------- 794 (1549)
T KOG0392|consen 733 SNLAPGLEEAQALISFERRGAELFLKILSKMFGGSLAA-KLPHLWDFLLKAL---------SGLIDGN-DEFL------- 794 (1549)
T ss_pred cccCcchhhhhhhHHHHhhhHHHHHHHHHHHhhHHHHH-hcchHHHHHHHhh---------hccCCCC-cchh-------
Confidence 00 11111 22788888999999999987655 4677776553211 0000000 0111
Q ss_pred hcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCC
Q 000098 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDN 2124 (2256)
Q Consensus 2045 ~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~ 2124 (2256)
.....+.+++..+|+.+.+ +.+.+|.++..+.+....+|.+++.|++.+......+.+..+++.++.++++.
T Consensus 795 -------~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 795 -------SSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred -------hhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 2345666777778888888 77888999999999999999999999999999766677788888888888876
Q ss_pred C-hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHhhh
Q 000098 2125 Q-ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2125 ~-~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~~~ 2203 (2256)
+ ...|+++...++.+.......+.+|.+.++++++++++|....||.+|..+++.+++.+|.+..+.-.+.+.+.|...
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ 946 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLAS 946 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHh
Confidence 5 556777778888888888888999999999999999999999999999999999999999887777777888999988
Q ss_pred hhhhhhh--ccCCccccCCcCCCCcchhhHHHHHH
Q 000098 2204 RDKERRK--KKGGPILIPGFCLPKALQPLLPIFLQ 2236 (2256)
Q Consensus 2204 ~d~~r~~--~~g~~~~l~g~~lp~~i~~~Lp~~~~ 2236 (2256)
+.++|++ +.+.+.++|.|.+|..|+.-|+.|||
T Consensus 947 ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQq 981 (1549)
T KOG0392|consen 947 KEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQ 981 (1549)
T ss_pred HHHHHHHHHHhcCcccCCccccccchhHHHHHHHH
Confidence 8888875 55566889999999999999999996
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-12 Score=153.10 Aligned_cols=425 Identities=17% Similarity=0.220 Sum_probs=308.5
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhhhhHh----hHHhHHHHHH-HhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000098 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2256)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~l~~~l~~~----~v~~ilp~Ll-~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2256)
...++|..-+-|++|+.-+..+++.+... .+.+++..+. +...+.+-..|+|++..+.+++-+.+..-..++..+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 34677888888999988888887765442 3566676444 445566777778999999988887766655699999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhhhCCCChhHHH---HHHHHHhcccccCCChhhH
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~Ll~~l~d~~~~vr~---al~~L~~~~~~~~~~~~~l 1574 (2256)
+|.++.+++|++..||.-||+++.+++++.+.. ++..+...+++...|++..++. -++.+++-........-++
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCH
Confidence 999999999999999999999999999998764 5589999999999999988874 4555554111112224578
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~ 1654 (2256)
+.++|.+...+...++.+|.....++..+-.. ..-++..|++.++++|++.+.|++.+||..+-.+++.+...+..+
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~- 242 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS- 242 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-
Confidence 89999999999999999999877777666542 334567899999999999999999999999888888776544311
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
+... ....+.+.++..+.++++..+..++..+..+....|.++.+|
T Consensus 243 ---------------P~s~-------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 243 ---------------PSSM-------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred ---------------cccc-------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 1110 123445556666777788888888877888888889999999
Q ss_pred HHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHhh----cc--chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhc
Q 000098 1735 LQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYA----TT--SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807 (2256)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~-~VR~~Al~al~~iv~~~~----~~--~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~ 1807 (2256)
+.+++..++.++.|..+ .+++.+...-..+...++ .+ .+..++..+.+.+.++....|.++++.+..+..+.+
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 99999999999998876 466665444333332222 11 234688999999999999999999999888764433
Q ss_pred CCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh-hHHHHHHHHH
Q 000098 1808 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVL 1886 (2256)
Q Consensus 1808 g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~-~~l~~~l~~L 1886 (2256)
|.... +.+.+...|...++|.+..|-..++..+..++.... +.+.+++..+
T Consensus 369 ~ql~~----------------------------h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sL 420 (675)
T KOG0212|consen 369 GQLLV----------------------------HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSL 420 (675)
T ss_pred chhhh----------------------------hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 32110 123466667778899999999999999988876432 2455555555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc
Q 000098 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2256)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2256)
++.. ....--.+..+.--+.++|-.+...
T Consensus 421 L~~f----~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 421 LEMF----KEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred HHHH----hhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 5544 3444455566666667777655543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-09 Score=141.07 Aligned_cols=804 Identities=17% Similarity=0.191 Sum_probs=426.6
Q ss_pred CcchHHHHHHHHHHcCCCCHHHH--HHHHHhhHHhHHhhc--------CchHHHHHHHHHHHhc-----CCCHHHHHHHH
Q 000098 1295 DPKVHAVVDKLLDVLNTPSEAVQ--RAVSSCLSPLMQSMQ--------DEAPTLVSRLLDQLMK-----SDKYGERRGAA 1359 (2256)
Q Consensus 1295 ~~~i~~il~~Ll~~L~~~~~~Vq--~~~~~~L~~lv~~~~--------~~~~~~l~~Ll~~L~~-----~~~~~vR~~Aa 1359 (2256)
||.++.+++.+............ ..+.+-+..+....+ +..-.+++.++..|.. ..+|..|-...
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilL 146 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILL 146 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 46666777777665544433322 223333333332221 1123445556665551 12578887777
Q ss_pred HHHHHHHhhh-Cccc------chhhcHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcC
Q 000098 1360 FGLAGVVKGF-GISS------LKKYGIAATLREGLAD--RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1360 ~~L~~lv~~~-g~~~------~~~~~il~~L~~~l~~--~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~ 1430 (2256)
.-|.-++... .... .++..+|..+....++ ..+|..|+.+...++.+.... ...+++..++..++.+-+
T Consensus 147 lWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~--D~~~~~~~Fl~~~l~~~s 224 (1133)
T KOG1943|consen 147 LWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSGILRRSAALLLSKLFSRT--DVKDLLLSFLDWLLDCPS 224 (1133)
T ss_pred HHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccc--cHHHHHHHHHHHhhcccc
Confidence 6666666532 1111 1122334444443321 113455666655444443221 234445555555555555
Q ss_pred CCcHH--HHHHHHHHHHHHHhhhhHh------------------------hHHhHHHHHHHhc-------cCCChhHHHH
Q 000098 1431 DQVVA--VREAAECAARAMMSQLSAQ------------------------GVKLVLPSLLKGL-------EDKAWRTKQS 1477 (2256)
Q Consensus 1431 D~~~~--VR~aa~~al~~l~~~l~~~------------------------~v~~ilp~Ll~~L-------~~~~w~~R~~ 1477 (2256)
+..++ +......++..+.++.+.. -+.+.++.+++.+ .+.+|+..++
T Consensus 225 ~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg 304 (1133)
T KOG1943|consen 225 TETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRG 304 (1133)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcc
Confidence 44433 2223344444444333221 1244566666643 2467887766
Q ss_pred HHHHHHHHHhh---------------ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000098 1478 SVQLLGAMAYC---------------APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2256)
Q Consensus 1478 a~~~Lg~la~~---------------~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 1542 (2256)
.-.+.+.+-.. ..++....++.++..|...++|.+..||..|++.++.+....+..-.++.+...
T Consensus 305 ~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~sv 384 (1133)
T KOG1943|consen 305 TRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSV 384 (1133)
T ss_pred cchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 44333332111 011233456678888889999999999999999999999887633335666666
Q ss_pred HhhhCCCC-hhH-HHHHHHHHhcccccCCChhhHhhHHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1543 LMGLTDPN-DHT-KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1543 l~~l~d~~-~~v-r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~--------d~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
++.+.--+ +.. -.++-++++...-.-.....+..++|++..++. ..+..+|-.||.++-.++.. ..+.+
T Consensus 385 id~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~ 463 (1133)
T KOG1943|consen 385 IDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSD 463 (1133)
T ss_pred HHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhh
Confidence 66332211 111 122223332222222333456788999888773 24568999999999999985 56788
Q ss_pred chhhhhhhhHHHH-HhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1613 MIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~-~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
+.|+++.+.+.|. ..+-|+.-..|.+|..|+...+...| .++.-++.+. + .+.-.-..|..+-..++..+..+.
T Consensus 464 l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~--n~p~Gi~Lis-~-~dy~sV~~rsNcy~~l~~~ia~~~- 538 (1133)
T KOG1943|consen 464 LKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQG--NFPHGISLIS-T-IDYFSVTNRSNCYLDLCVSIAEFS- 538 (1133)
T ss_pred hhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCC--CCCCchhhhh-h-cchhhhhhhhhHHHHHhHHHHhhh-
Confidence 9999998888654 45679999999999999887665443 2333333221 1 111112234444444555554442
Q ss_pred hHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1692 VYFEHILPDIIRN-CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1692 ~~l~~ll~~ll~~-l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
.+.++++..++.. +.+-+..+|+.+..++..+.....+.+. +..+|++++.....+...|.+...+++.++.+...
T Consensus 539 ~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a---~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~ 615 (1133)
T KOG1943|consen 539 GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA---DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRK 615 (1133)
T ss_pred hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc---ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhh
Confidence 3567777777766 8888999999999999998877665433 24678888877777888898888777776554321
Q ss_pred cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHH
Q 000098 1771 TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2256)
Q Consensus 1771 ~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~ 1850 (2256)
- ..+.+.+.+ .| +..+. .++..++
T Consensus 616 l--~~~~~~l~e--------~~---i~~l~-------------------------------------------~ii~~~~ 639 (1133)
T KOG1943|consen 616 L--EPVIKGLDE--------NR---IAGLL-------------------------------------------SIIPPIC 639 (1133)
T ss_pred h--hhhhhhhHH--------HH---hhhhh-------------------------------------------hhccHHH
Confidence 1 001111100 00 00000 0111111
Q ss_pred HHhcCCc--HHHHHHHHHHHHHHHhcChhHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh--Cccchh-ch
Q 000098 1851 MVRSDVS--LSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKL--GERVLP-SI 1924 (2256)
Q Consensus 1851 ~~~~D~~--~~Vr~aA~~~l~~l~~~~~~~l~~~l~~-Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~--~~~~l~-~l 1924 (2256)
....+.- .-.|.+.......+..+-++.+.+++-. .-..+...+.+++ .+|..+..++++++... ++.... .+
T Consensus 640 ~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~l 718 (1133)
T KOG1943|consen 640 DRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPL 718 (1133)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHH
Confidence 1110100 2244444455555544444433333333 2222333334555 88999999999999743 232222 35
Q ss_pred HHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhH-hhHhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhc----
Q 000098 1925 IPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAG---- 1997 (2256)
Q Consensus 1925 lp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~-~~l~~li~~l~~~L-~D~~~~VR~~A~~al~~l~~~~g---- 1997 (2256)
+......+.+. +...|++...+++.+-. ..+. ++.+.+...+.... .|..++-|.....++..+++.++
T Consensus 719 i~~~ls~~~~~~~~~~r~g~~lal~~lp~----~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~ 794 (1133)
T KOG1943|consen 719 ITRYLSRLTKCSEERIRRGLILALGVLPS----ELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLF 794 (1133)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHccCcH----HhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555 57788887776653321 1111 22333444444333 35578889999999999988877
Q ss_pred hhhHHhHHHHHHHhhccCCc----------hHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHh--C
Q 000098 1998 MQAIDEIVPTLLHALEDDQT----------SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA--G 2065 (2256)
Q Consensus 1998 ~~~~~~ilp~Ll~~L~~~~~----------~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~--g 2065 (2256)
...++++...|+++|++-.. ++.|+.++..+. ... +
T Consensus 795 ~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~--------------------------------~~l~~p 842 (1133)
T KOG1943|consen 795 SESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL--------------------------------DTLSSP 842 (1133)
T ss_pred cccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh--------------------------------hhhcCc
Confidence 24567888889998877321 112222222221 111 1
Q ss_pred CCcccc-HhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc----chhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000098 2066 PGLNFH-LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI----DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2256)
Q Consensus 2066 ~~l~~~-l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~----~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~ 2140 (2256)
+-+.+. ...++..+++.-.++-...|+.+..|+..++..- .-++.+.+...+-....+-.+..-.........+
T Consensus 843 ~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f~L~~~L- 921 (1133)
T KOG1943|consen 843 KLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTLFPLNSSL- 921 (1133)
T ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchhhhHHHHH-
Confidence 112221 2223333344333444556888888888877651 1122333333222111111222222222222222
Q ss_pred HhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc---cCCCCchhchHHHHHHHHhhhhhhhh
Q 000098 2141 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA---SVPKEVQPSYIKVIRDAISTSRDKER 2208 (2256)
Q Consensus 2141 ~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~---~l~~e~l~~lv~~l~~~l~~~~d~~r 2208 (2256)
..+..|...++..+...+..--...++.|..++-..++ ..|+. .+.+-..+.+......-++|
T Consensus 922 ----l~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R~~~~dp~t-~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 922 ----LELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVRDENSDPKT-IGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred ----HhhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhcCccc-ccchHHHHHHHHHHHHHHHH
Confidence 12444666666666666665455677788877777766 34433 44555555555555444444
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-11 Score=145.70 Aligned_cols=423 Identities=19% Similarity=0.237 Sum_probs=299.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HHH
Q 000098 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFE 1695 (2256)
Q Consensus 1623 ~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~ 1695 (2256)
.+...+.|...+-|.+|+--+..+++.+-.. .+..++..+............|.|+..+++.+.-++|.+ |.+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 3455677888999999999999999865322 345566655554444455556788889999888888876 789
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhc
Q 000098 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2256)
Q Consensus 1696 ~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~ 1775 (2256)
.++|.++..+.|++..+|-.+|..+-.+++....++-+|.+.+...+.+...|.+..||.+|- .+..+++....
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVt----- 157 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVT----- 157 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhcc-----
Confidence 999999999999999999999999999999999988999999999999999999999987642 22222211100
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcC
Q 000098 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2256)
Q Consensus 1776 llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D 1855 (2256)
+++..+. .+++++-|-....+
T Consensus 158 -------------------------------------------e~~~tFs----------------L~~~ipLL~eriy~ 178 (675)
T KOG0212|consen 158 -------------------------------------------ESASTFS----------------LPEFIPLLRERIYV 178 (675)
T ss_pred -------------------------------------------ccccccC----------------HHHHHHHHHHHHhc
Confidence 0000010 01122222222345
Q ss_pred CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHhhh
Q 000098 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRG 1931 (2256)
Q Consensus 1856 ~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~ 1931 (2256)
.+...|+..+..+..+-...+..+-.|+|.+++.+...|++++.++|..+-.+++++....... -.+++++.+...
T Consensus 179 ~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~ 258 (675)
T KOG0212|consen 179 INPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPH 258 (675)
T ss_pred CCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccc
Confidence 5566777777766666555667788899999999999999999999999999999998866433 357888999999
Q ss_pred cCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhchhhH------HhH
Q 000098 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQAI------DEI 2004 (2256)
Q Consensus 1932 l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~-~VR~~A~~al~~l~~~~g~~~~------~~i 2004 (2256)
++++++..+..+..|+.+++...|+. +.+|...++..+..++.|.++ ..++.|...-+.+.+.++.... ..+
T Consensus 259 l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~i 337 (675)
T KOG0212|consen 259 LQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSI 337 (675)
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHH
Confidence 99999999999999999998776654 567889999999999988877 4777665554445444332211 133
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhC
Q 000098 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG 2084 (2256)
Q Consensus 2005 lp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~ 2084 (2256)
+..+.+.+.++.+. +-+ ....-+..|...++..+..|.+.|++.|++.+.
T Consensus 338 i~vl~~~l~~~~~~-tri-----------------------------~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 338 IEVLTKYLSDDREE-TRI-----------------------------AVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHhhcchHH-HHH-----------------------------HHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc
Confidence 33333333332210 111 112223334455677888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHH
Q 000098 2085 DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2256)
Q Consensus 2085 ~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~ 2141 (2256)
|+++++-..+...++.++.+....+...++..|++..+.+..-.+.-+.-.+.++|-
T Consensus 388 d~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred CchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 999999999999999999876666778888888888776553333333334444443
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-07 Score=122.70 Aligned_cols=759 Identities=17% Similarity=0.166 Sum_probs=415.0
Q ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHhhHHhHHhhcC------chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000098 1299 HAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370 (2256)
Q Consensus 1299 ~~il~~Ll~~L~--~~~~~Vq~~~~~~L~~lv~~~~~------~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g 1370 (2256)
..++..|...+. +.+..|.+.+..||..++...+- .....+..++....+. .+.+|..|..+++.++.+..
T Consensus 92 s~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~-~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 92 SDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHK-KPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHcCCC
Confidence 344444444433 66778999999999999876421 2344555555555444 57899999999999998543
Q ss_pred cccch-hh---cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000098 1371 ISSLK-KY---GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2256)
Q Consensus 1371 ~~~~~-~~---~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2256)
-.... .+ .+..+..+.++..-.+..-...+..+..|-..+...-.+.+..+-..++..++..+..|+-.+.+++..
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~ 250 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHS 250 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 11111 01 233333333433322222333333343333334443367788888899999999999999999999999
Q ss_pred HHhhhhHhh----HHhHHHHHHHhccCC-ChhHHHH----HHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHH
Q 000098 1447 MMSQLSAQG----VKLVLPSLLKGLEDK-AWRTKQS----SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517 (2256)
Q Consensus 1447 l~~~l~~~~----v~~ilp~Ll~~L~~~-~w~~R~~----a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~ 1517 (2256)
+...-+... ...++..+.+.-.+. +...-.+ -..+...++...++..-..+|.+++.++.++...++++-.
T Consensus 251 lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q 330 (1176)
T KOG1248|consen 251 LFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQ 330 (1176)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHH
Confidence 987665521 133444444433221 1111100 1122223333334444456778888888888888889988
Q ss_pred HHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1518 AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1518 aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
++.+++..+.+.... +.+.+... .+..++.-+...+-+.+.
T Consensus 331 ~a~q~l~~il~~sv~-----~~~~~c~~----------------------------------~~~~~l~~kf~~~~~~il 371 (1176)
T KOG1248|consen 331 AASQSLKEILKESVT-----VIDALCSK----------------------------------QLHSLLDYKFHAVWRFIL 371 (1176)
T ss_pred HHHHHHHHHhcccCc-----ccHHHHHH----------------------------------HHHHHHcchHHHHHHHHH
Confidence 888888887754321 11111110 112222222334555566
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHH
Q 000098 1598 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~ 1677 (2256)
+++..+++.++. ...|++-..+..+-..=.+++..-+...-.|+|+.+.++|++.+=.++|.=+ ..+.....|
T Consensus 372 qi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~~s~~~~R-- 444 (1176)
T KOG1248|consen 372 QILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HAESLSFTR-- 444 (1176)
T ss_pred HHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cccccccch--
Confidence 677777775544 3345555555555444445555566677889999999999875555555332 111111111
Q ss_pred HHHHHHHHHHHh--c--HhHH-HHHHHHHHHh------ccCC---CHHHHHHHHHHHHHhHhhh--ChhHHHHHHHHHHH
Q 000098 1678 AAQGLSEVLAAL--G--TVYF-EHILPDIIRN------CSHQ---RASVRDGYLTLFKYLPRSL--GVQFQNYLQQVLPA 1741 (2256)
Q Consensus 1678 aa~~L~~i~~~~--g--~~~l-~~ll~~ll~~------l~~~---~~~vR~~al~~l~~La~~~--g~~f~~yl~~ilp~ 1741 (2256)
++-| -+++.. | -.++ +.++|...+. +... ....+....++|+-++... +.+...-+..+.|.
T Consensus 445 -sWLL-PvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~ 522 (1176)
T KOG1248|consen 445 -SWLL-PVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPI 522 (1176)
T ss_pred -hHhH-HHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHH
Confidence 1111 111111 1 1111 3333333222 1111 1134445556666665543 23444445667777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhc------------cchhchHHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 000098 1742 ILDGLADENESVRDAALGAGHVLVEHYAT------------TSLPLLLPAVEDGIFN------DNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1742 Ll~~L~d~~~~VR~~Al~al~~iv~~~~~------------~~~~~llp~L~~~l~d------~~~~iR~~sv~llg~ll 1803 (2256)
+...+... ++.|...+.++..+++.-.+ .....++|.+.+.-.. ..-+.|..-++.+-...
T Consensus 523 l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~ 601 (1176)
T KOG1248|consen 523 LGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDY 601 (1176)
T ss_pred HHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHH
Confidence 77777654 48899999999888764210 0112244444332211 11122222222222111
Q ss_pred HhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHH----HHHHHHHHHHHHHhcCh-hH
Q 000098 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS----VRQAALHVWKTIVANTP-KT 1878 (2256)
Q Consensus 1804 ~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~----Vr~aA~~~l~~l~~~~~-~~ 1878 (2256)
++.. .......+.+.+| ....|.+.. .+..-+..+..++...+ ..
T Consensus 602 ~~~t------------------~~dv~~~l~~s~~------------e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~ 651 (1176)
T KOG1248|consen 602 FTVT------------------PTDVVGSLKDSAG------------ELASDLDESVASFKTLSLLDLLIALAPVQTESQ 651 (1176)
T ss_pred hhcc------------------cHHHHHHHHHHHH------------hHhccchhhhhhHHHHHHHHHHHhhhccccchh
Confidence 1100 0000011111111 111122111 11222233333333222 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-----hCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHh
Q 000098 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK-----LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~-----~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2256)
+..+. ++.+. ..++.+..+|.-+.+-|..++.. +.......+...|.+.+++.....|...+.++..++..
T Consensus 652 vs~l~-~v~~~---~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 652 VSKLF-TVDPE---FENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred HHHHH-HhhHH---hhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 22222 22222 22455788899999999998876 12223455566666666666677888899999999888
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhc
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT 2033 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~ 2033 (2256)
++.+ ...+....++.+.-.+.+.+..-|+.|..++-.+... -.-+++.++. +-
T Consensus 728 ~~~e-~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i-------------~~~~d~g~e~--~~----------- 780 (1176)
T KOG1248|consen 728 LSAE-HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI-------------QSSLDDGNEP--AS----------- 780 (1176)
T ss_pred ccHH-HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH-------------Hhhhcccccc--hH-----------
Confidence 8743 3345566666666666788888888776665555420 0001111110 00
Q ss_pred ccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh----cchhc
Q 000098 2034 TAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV----IDEEG 2109 (2256)
Q Consensus 2034 ~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~----~~~~~ 2109 (2256)
..+.+|+..| ...+..+..-++..-+-++..++.. ++.+.
T Consensus 781 --------------------------------~~lnefl~~I----sagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~ 824 (1176)
T KOG1248|consen 781 --------------------------------AILNEFLSII----SAGLVGDSTRVVASDIVAITHILQEFKNILDDET 824 (1176)
T ss_pred --------------------------------HHHHHHHHHH----HhhhcccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 0111122222 2222222222222224455555542 35577
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchh-hhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCc
Q 000098 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV 2188 (2256)
Q Consensus 2110 ~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~-~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~ 2188 (2256)
++.+++.+..++.+.++.+|.+|+.++..++...+. -+.+|.+.+++.++.+..|-...+|..+-.-|-.++.+.+.+.
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 889999999999999999999999999999987664 4788999999999999999999999999999999999999888
Q ss_pred hhchHHHHH-HHHhhhh
Q 000098 2189 QPSYIKVIR-DAISTSR 2204 (2256)
Q Consensus 2189 l~~lv~~l~-~~l~~~~ 2204 (2256)
+..+.|... +.|...|
T Consensus 905 Le~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 905 LESFLPEEDMKLLTNIR 921 (1176)
T ss_pred HHhhCHHHHHHHHHHHH
Confidence 888877643 3444433
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-10 Score=153.10 Aligned_cols=478 Identities=18% Similarity=0.201 Sum_probs=322.0
Q ss_pred hhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1451 LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1451 l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
..++.+...++.+++.+.+++...|+.+...+..+....++.+ .-++..+.+-+.++++.+|..|.+++..++
T Consensus 35 ~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~----~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--- 107 (526)
T PF01602_consen 35 MLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL----ILIINSLQKDLNSPNPYIRGLALRTLSNIR--- 107 (526)
T ss_dssp HTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH----HHHHHHHHHHHCSSSHHHHHHHHHHHHHH----
T ss_pred HcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH----HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---
Confidence 4456677889999999999999999999988888887777632 246677777899999999999999999887
Q ss_pred Cchh-HHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1531 KNPE-IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLAL-LVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1531 ~~~~-i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~-i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
+++ .+.+++.+.+.+.|+++.+|. |+.++...-.. ++..... +++.+.+.+.|.++.++..|+.++..+ +
T Consensus 108 -~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~-- 180 (526)
T PF01602_consen 108 -TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K-- 180 (526)
T ss_dssp -SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H--
T ss_pred -ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c--
Confidence 454 488999999999999999984 55555441111 1122223 789999999999999999998888887 2
Q ss_pred CCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCch--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF--PDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1608 ~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~--~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i 1685 (2256)
..+.......+.+.+.+.+.+.+++|..+..+++.+..++..-. ... ..+++.+...+.+ .+..+...++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-~~~~~~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 181 CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-EDADKNRIIEPLLNLLQS-SSPSVVYEAIRLIIKL 258 (526)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-hhhhHHHHHHHHHHHhhc-cccHHHHHHHHHHHHh
Confidence 12111124566677777777789999999888888876553211 122 3577777777774 3333444444444322
Q ss_pred HHHhcHh-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1686 LAALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1686 ~~~~g~~-~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
.... ....+++.+...+.++++.+|-.++.++..++....+ ++......+.....+++..+|..+++.+..+
T Consensus 259 ---~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~----~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 259 ---SPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP----AVFNQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp ---SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH----HHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred ---hcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch----hhhhhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 2222 4677888999999999999999999999988876522 2222222233334488899999988887777
Q ss_pred HHHhhccchhchHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhH
Q 000098 1765 VEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2256)
Q Consensus 1765 v~~~~~~~~~~llp~L~~~l~d-~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~ 1843 (2256)
+.. ..+..+++.+.+.+.+ .+..+|..++..++.+....++ ..+
T Consensus 332 ~~~---~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~--------------------------------~~~ 376 (526)
T PF01602_consen 332 ANE---SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP--------------------------------DAE 376 (526)
T ss_dssp --H---HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS--------------------------------SHH
T ss_pred ccc---cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc--------------------------------hHH
Confidence 643 3455678888887743 3666899999999888643211 011
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc-cchh
Q 000098 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLP 1922 (2256)
Q Consensus 1844 ~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-~~l~ 1922 (2256)
..+..+..........+...+...+..+..+.|..-...+..++..+. .-.++..+..+++.+|+.+..... ...+
T Consensus 377 ~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~---~~~~~~~~~~~~wilGEy~~~~~~~~~~~ 453 (526)
T PF01602_consen 377 WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE---DISSPEALAAAIWILGEYGELIENTESAP 453 (526)
T ss_dssp HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT---SSSSHHHHHHHHHHHHHHCHHHTTTTHHH
T ss_pred HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH---HhhHHHHHHHHHhhhcccCCcccccccHH
Confidence 222333333333333455556666666776666655556666655553 245678899999999999887765 3456
Q ss_pred chHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000098 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTL 1992 (2256)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~--D~~~~VR~~A~~al~~l 1992 (2256)
.++..+.+.+.+.++.+|..+..++..+....+.... .+.+.+.+..... +.+.+||+.|..-+.-+
T Consensus 454 ~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~---~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 454 DILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV---QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH---HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 6677777777777788999998888888766543222 2356777777776 78999999987655433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.43 E-value=7e-10 Score=149.31 Aligned_cols=496 Identities=17% Similarity=0.189 Sum_probs=331.1
Q ss_pred CHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcc-hHHHHHHHHH
Q 000098 1229 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVDKLLD 1307 (2256)
Q Consensus 1229 ~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~-i~~il~~Ll~ 1307 (2256)
+..-+..++.-...... .|.+ ++.+.+.+-+++.. ++ . ..|..+-..+..+.. .++. +.-++..+..
T Consensus 19 ~~~~~~~~l~kli~~~~-~G~~-~~~~~~~vi~l~~s--~~--~--~~Krl~yl~l~~~~~----~~~~~~~l~~n~l~k 86 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMM-LGYD-ISFLFMEVIKLISS--KD--L--ELKRLGYLYLSLYLH----EDPELLILIINSLQK 86 (526)
T ss_dssp HHHHHHHHHHHHHHHHH-TT----GSTHHHHHCTCSS--SS--H--HHHHHHHHHHHHHTT----TSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCC-CchHHHHHHHHhCC--CC--H--HHHHHHHHHHHHHhh----cchhHHHHHHHHHHH
Confidence 55445444433332222 3332 34455544444332 11 1 345544444444332 2333 4446777888
Q ss_pred HcCCCCHHHHHHHHHhhHHhHHhhcCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHH
Q 000098 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386 (2256)
Q Consensus 1308 ~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~ 1386 (2256)
.|.++++.+|..+..+++.+. .++. +.+++.+ ..+..++++.+|+.|+.++..+.+.. ++..... +++.+.+.
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v-~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~-~~~~l~~l 160 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDV-IKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDE-LIPKLKQL 160 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHH-HHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGG-HHHHHHHH
T ss_pred hhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHH-HHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHH-HHHHHhhh
Confidence 999999999988888887765 2222 3334434 44556777999999999999999874 3444322 68888888
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHH
Q 000098 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLK 1465 (2256)
Q Consensus 1387 l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~ 1465 (2256)
+.+. ++.++..|+.++..+ +..++.+.+.+..+...+...+++.++.++....+.+..+........- ..+++.+..
T Consensus 161 L~d~-~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~ 238 (526)
T PF01602_consen 161 LSDK-DPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN 238 (526)
T ss_dssp TTHS-SHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred ccCC-cchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence 8665 799999998888888 2222222245666667777777999999988887777766543322221 468888888
Q ss_pred hccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhh
Q 000098 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2256)
Q Consensus 1466 ~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~ 1545 (2256)
.+.+.++.+...++.++..+....+ .+..+++.+..++.++++.+|..+..+|..++... .+.+......+...
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v~~~~~~~~~l 312 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAVFNQSLILFFL 312 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHHGTHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhhhhhhhhhhee
Confidence 8888888888888877775543221 45678899999999999999999999999998764 23333222233334
Q ss_pred hCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHH
Q 000098 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2256)
Q Consensus 1546 l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~ 1623 (2256)
..+++..+| .+++.+... .+......+++.+...+.+. +.+.|..+...++.++... +.+ .+..+..
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l-----~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~--~~~----~~~~v~~ 381 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKL-----ANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF--PPD----AEWYVDT 381 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH--GSS----HHHHHHH
T ss_pred cCCCChhHHHHHHHHHhhc-----ccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc--Cch----HHHHHHH
Confidence 446777776 466666542 12345667888888888544 7789999999999999753 223 3345667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH-hHHHHHHHHHH
Q 000098 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDII 1702 (2256)
Q Consensus 1624 L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~l~~ll~~ll 1702 (2256)
+.+++......+...+...+..+.... ++.....+..+.+.+.+-..+..+..+++.+|+....... .....++..+.
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~ 460 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNN-PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLI 460 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHH
Confidence 777777777778888888888877653 3345678899999888877777888888889998877654 24556677777
Q ss_pred HhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 000098 1703 RNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA--DENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1703 ~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~--d~~~~VR~~Al~al~~i 1764 (2256)
......+..+|...+.++.-+....+..- ..+.+.+.+.+... +.+.+||+.|..-+..+
T Consensus 461 ~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 461 ENFIEESPEVKLQILTALAKLFKRNPENE--VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHhhCCchh--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 77777788899999999988887766421 22467777777777 77999999887765543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-06 Score=115.25 Aligned_cols=769 Identities=17% Similarity=0.196 Sum_probs=407.1
Q ss_pred HHHHHHHccccc--hHHHHHHHHHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhh
Q 000098 1027 SVLYHVLGVVPS--YQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWI 1104 (2256)
Q Consensus 1027 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1104 (2256)
.+|-.++...|+ +++...+.++-+...++ .-+.+..|+..+.-.|..+.+
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~----------~~stn~svlr~~iscL~~lLr------------------ 124 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLT----------AESTNGSVLRLAISCLEDLLR------------------ 124 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh----------hhcccchHHHHHHHHHHHHHH------------------
Confidence 344455555565 44444444443333222 235677788877777764431
Q ss_pred hccCCcHHHHHHHHHHHhhcCCCCCCChHhHHHhhcCCCHHHHHHHHHHHHHHHHhCC---Cc----HHHHHHHHHHHHH
Q 000098 1105 AVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP---DS----IQGSLSTLFSLYI 1177 (2256)
Q Consensus 1105 a~~d~~~~~~~~~~~~w~~~~~~~~~~~~~ll~~l~~~~~~vR~~aa~ala~~~~~~~---~~----~~~~l~~L~~~~~ 1177 (2256)
+ +|. .-|. .....+.+..++.+..|+.+.+|..+.++++.++...| +. ...+.........
T Consensus 125 a-Qd~---------~aW~--~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e 192 (1176)
T KOG1248|consen 125 A-QDA---------SAWS--YSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIE 192 (1176)
T ss_pred H-cch---------hhhc--cccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHH
Confidence 2 111 1455 21222334677788889999999999999999987432 11 1112222222221
Q ss_pred hhcCCCCCCCCCCcchhHHHHHHHHHh---hhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccc
Q 000098 1178 RDIGLGGDNVDAGWLGRQGIALALHSA---ADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254 (2256)
Q Consensus 1178 ~~~~~~~~~~~~~~~~R~~~~~aL~~l---~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~ 1254 (2256)
..+.+ ..-..+...|.-+ ...|+...+..+-+.++ ..++..+..|+..++.|+......+...--..
T Consensus 193 ~~~~~---------a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL-~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~ 262 (1176)
T KOG1248|consen 193 SKLGS---------AENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLL-NITTESPVLVLLEVLQCLHSLFKKHPTALAAE 262 (1176)
T ss_pred hhhch---------HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 11110 0112223333332 22233344444444442 46777888999999999887776654311112
Q ss_pred hHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHh---hhccC-----CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHH
Q 000098 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK---HLAKD-----DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSP 1326 (2256)
Q Consensus 1255 Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~---~l~~~-----~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~ 1326 (2256)
+.-.+...+....+. +.++.. .+.++..+.+ ++... ...+..++..++..+..+.+++-.++..|+..
T Consensus 263 ~~a~lL~al~~l~ps-~~D~~~---t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~ 338 (1176)
T KOG1248|consen 263 LNARLLTALMTLSPS-ENDDLL---TVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKE 338 (1176)
T ss_pred HHHHHHHHHHHhCCC-ccchHH---HHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 222233333332222 121111 2222222221 11111 12234445555555556677776777788766
Q ss_pred hHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH--hCCCCHHHHHHHHHHHH
Q 000098 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL--ADRNSAKRREGALLAFE 1404 (2256)
Q Consensus 1327 lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l--~~~~~~~~Re~al~al~ 1404 (2256)
+....-.-.+..-..-++.+.+-.-..+-+.+.+.+..+...+|..... .+.+.|.... ....+...+..--.++|
T Consensus 339 il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~--~l~~~L~~l~~lr~~~d~~~~~~ld~~IG 416 (1176)
T KOG1248|consen 339 ILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGP--ELTKTLEGLCDLRASPDFFHKLQLDQCIG 416 (1176)
T ss_pred HhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCH--HHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 6543211111222223445555444556677888888888888864332 3444443221 11112223334445555
Q ss_pred HHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH----hhHHhHHHHHHH------hccCCChhH
Q 000098 1405 CLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----QGVKLVLPSLLK------GLEDKAWRT 1474 (2256)
Q Consensus 1405 ~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~----~~v~~ilp~Ll~------~L~~~~w~~ 1474 (2256)
.-...+|. ..+-.++|.=+ ..+.....| .|.+-.+=.+... .-...++|.... .+.+..-..
T Consensus 417 SAV~AmGP---e~vL~~lpLnl--~~~s~~~~R---sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~ 488 (1176)
T KOG1248|consen 417 SAVRAMGP---ERVLTILPLNL--HAESLSFTR---SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQV 488 (1176)
T ss_pred HHHHhhCH---HHHHHHcchhc--cccccccch---hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcH
Confidence 55555552 22344555443 112111111 1222111111111 111333333322 111111111
Q ss_pred H---HHHHH---HHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch------------hHH
Q 000098 1475 K---QSSVQ---LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP------------EIA 1536 (2256)
Q Consensus 1475 R---~~a~~---~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~------------~i~ 1536 (2256)
+ .-..+ +|..+|+ .|-++...+..+.|.+...+.-. ++.|...|.+|..+.+...++ +-.
T Consensus 489 ~~~~tl~~QLW~LLP~FC~-~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Ak 566 (1176)
T KOG1248|consen 489 SLYDTLVDQLWSLLPGFCN-YPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAK 566 (1176)
T ss_pred HHHHHHHHHHHHhChhhhC-CCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhh
Confidence 1 11111 1222221 36667777888888888877765 499999999999888764210 012
Q ss_pred hHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh
Q 000098 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~ 1616 (2256)
.++|.+......+....+ +. ...|.....++.+..-.. .+.++
T Consensus 567 nfL~~lfn~ytq~~~~~~-----------------~~----------------l~~~~~~L~~i~~~~~~~-t~~dv--- 609 (1176)
T KOG1248|consen 567 NFLPRLFNVYTQTVAAGR-----------------KI----------------LASRSTVLEIIRVDYFTV-TPTDV--- 609 (1176)
T ss_pred HHHHHHHHHhcCCCcccc-----------------cc----------------HHHHHHHHHHHHHHHhhc-ccHHH---
Confidence 333333333222111000 00 111222112221111000 11111
Q ss_pred hhhhhHHHHHhhcCCCHHH----HHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH----
Q 000098 1617 IGLLLPEVKKVLVDPIPEV----RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---- 1688 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d~~~~V----R~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~---- 1688 (2256)
...+...+.....+.+..+ +.....-+..++....+++...+. .+.....+..+..++..+..-|.+++..
T Consensus 610 ~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~ 688 (1176)
T KOG1248|consen 610 VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGE 688 (1176)
T ss_pred HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchh
Confidence 1112222222222322222 222233333333333333333333 2333333334556777777777777765
Q ss_pred -hcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--
Q 000098 1689 -LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV-- 1765 (2256)
Q Consensus 1689 -~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv-- 1765 (2256)
+-.+..+.+...+...+++.....|...+.++..+-...+.++..++...+|.++-.+++.+..-|..+...+..|.
T Consensus 689 ~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i 768 (1176)
T KOG1248|consen 689 GLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI 768 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH
Confidence 22335566677777777778888999999999999999998778888888888877778888999999988887776
Q ss_pred HHhhc-------cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhc
Q 000098 1766 EHYAT-------TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2256)
Q Consensus 1766 ~~~~~-------~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg 1838 (2256)
..+-. ..+..+++.+..++..+..+++.+.+-.++.+++. ....++
T Consensus 769 ~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---------------------------~~~~ld 821 (1176)
T KOG1248|consen 769 QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---------------------------FKNILD 821 (1176)
T ss_pred HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---------------------------Hhcccc
Confidence 33322 13455777777777776667666656666666532 223344
Q ss_pred chhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917 (2256)
Q Consensus 1839 ~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~-~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~ 1917 (2256)
.+....++..++.++.....+++.+|+..++.++...|. .+.+++|.+++.+.....+....+|...-.-|..+++++|
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 445566777777778888899999999999999998884 6788999999999887777788889999999999999999
Q ss_pred ccchhchHH
Q 000098 1918 ERVLPSIIP 1926 (2256)
Q Consensus 1918 ~~~l~~llp 1926 (2256)
...+..++|
T Consensus 902 ~~eLe~~~p 910 (1176)
T KOG1248|consen 902 AEELESFLP 910 (1176)
T ss_pred HHHHHhhCH
Confidence 876666665
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-07 Score=119.55 Aligned_cols=494 Identities=15% Similarity=0.185 Sum_probs=279.5
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh--Ccccc
Q 000098 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSL 1374 (2256)
Q Consensus 1298 i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~--g~~~~ 1374 (2256)
++.+++.|+.++++.+..||..+++.++.+........ .+.+...++.+.-.++...-+||+.+|++++..- -+..+
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 45677888889999999999999999888877664332 3445555553333345677889999999998632 12222
Q ss_pred hhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHH-HcCCCcHHHHHHHHHHHH
Q 000098 1375 KKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLV-AFSDQVVAVREAAECAAR 1445 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~-------~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~-~l~D~~~~VR~aa~~al~ 1445 (2256)
.+++|.+.+.+. .....++|++|++++-+++.... ..+.|++..+.+.++. .+-|++-++|.+|..|+.
T Consensus 419 --~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 419 --EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred --HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 268888877653 12346899999999999988765 5689999988887764 688999999999988887
Q ss_pred HHHhhhhH--hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh-hcCCCHHHHHHHHHH
Q 000098 1446 AMMSQLSA--QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-LTDTHPKVQSAGQTA 1522 (2256)
Q Consensus 1446 ~l~~~l~~--~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~-L~D~~~~VR~aA~~a 1522 (2256)
..+...+. +|++-+ ...+.-+-..|..+...+....... ..+...++..++.- +.+=++.+|..++++
T Consensus 497 E~VGR~~n~p~Gi~Li-----s~~dy~sV~~rsNcy~~l~~~ia~~----~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLI-----STIDYFSVTNRSNCYLDLCVSIAEF----SGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred HHhccCCCCCCchhhh-----hhcchhhhhhhhhHHHHHhHHHHhh----hhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 76654332 232211 0111001111222222222211112 22223344444333 667778999999999
Q ss_pred HHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH----HH----HHHHhccc-ccCCChhhHhh---HHHHHHHhhcCC--
Q 000098 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SL----DILLQTTF-VNTVDAPSLAL---LVPIVHRGLRER-- 1588 (2256)
Q Consensus 1523 L~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~----al----~~L~~~~~-~~~~~~~~l~~---i~p~L~~~L~d~-- 1588 (2256)
|..+...-........+|.+++....++...|. +. ..+..... ....+...++. ++|.+...-..+
T Consensus 568 L~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~ 647 (1133)
T KOG1943|consen 568 LHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQ 647 (1133)
T ss_pred HHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccch
Confidence 999876532212245666666666555554442 11 11111110 00111111222 222222111111
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh--CcCchH-HHHHHHHH
Q 000098 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM--GEENFP-DLVSWLLD 1664 (2256)
Q Consensus 1589 ~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~--g~~~~~-~lip~Ll~ 1664 (2256)
..-.|...+..+..+.. .+......+ .......+.+.+.+++ .+|..+..+++.++... +++... +++...+.
T Consensus 648 ~~lmr~~~~~~Ie~~s~--s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls 724 (1133)
T KOG1943|consen 648 GTLMRQATLKFIEQLSL--SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLS 724 (1133)
T ss_pred HHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHH
Confidence 23455666666665543 121111111 1111222333334555 89999999999998743 333333 47777777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhcHhHH-HHHHHHHHHhccC-CCHHHHHHHHHHHHHhHhhhCh-hHHHHHHHHHHH
Q 000098 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPA 1741 (2256)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-~~ll~~ll~~l~~-~~~~vR~~al~~l~~La~~~g~-~f~~yl~~ilp~ 1741 (2256)
.+.+..+..+|.+...+++.+....-.-.+ +.+...++..... ..+.-|...+.++..++.+.+. .|..-.++++..
T Consensus 725 ~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~ 804 (1133)
T KOG1943|consen 725 RLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRET 804 (1133)
T ss_pred HhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 777766666788777666554432211122 2232333332222 2677888888888888877762 233334555555
Q ss_pred HHHhcCC----C----CHHHHHHHHHHHHHHHHHhhc-cc-----hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1742 ILDGLAD----E----NESVRDAALGAGHVLVEHYAT-TS-----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1742 Ll~~L~d----~----~~~VR~~Al~al~~iv~~~~~-~~-----~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
+++++.| . ...||++|++++..+...... .. +..++-.+.+.-.++-.+.|.-++.++..+.++
T Consensus 805 LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 805 LLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 6666554 3 246899999999887765542 21 122233333344455567787777777777654
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-07 Score=117.21 Aligned_cols=636 Identities=15% Similarity=0.178 Sum_probs=353.1
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH---------HHhhcC-
Q 000098 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED---------IWDRYG- 1125 (2256)
Q Consensus 1056 ~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~---------~w~~~~- 1125 (2256)
.+++.+.+.++++||+.+|++||++|.+.... |.. +...+-++..|+.+.+.+.+.. -|....
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgF--v~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~ 75 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGF--VSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA 75 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcH--HHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC
Confidence 46788899999999999999999999977532 322 3445556666776666444333 455441
Q ss_pred ----CCCCC----Ch-HhHHHhhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhH
Q 000098 1126 ----YDFGT----DY-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2256)
Q Consensus 1126 ----~~~~~----~~-~~ll~~l~~~~~~vR~~aa~ala~~~-~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~ 1195 (2256)
..+.+ .+ +.+++++.+....+|..-...+..+. +.+|+.|+.++.......+ ......=.
T Consensus 76 ~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----------s~~~~~vy 145 (1010)
T KOG1991|consen 76 PGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----------SQDANHVY 145 (1010)
T ss_pred CCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----------CcchhhHH
Confidence 11221 13 67888888889999999998886665 4688999998888776422 12222336
Q ss_pred HHHHHHHHhhhhhc---cC---ChhHhHHHHH-------HhhcCCCCHHHH---HHHHHHHHHHHHhh------cccccc
Q 000098 1196 GIALALHSAADVLR---TK---DLPVIMTFLI-------SRALADTNADVR---GRMLNAGIMIIDKH------GRDNVS 1253 (2256)
Q Consensus 1196 ~~~~aL~~l~~~~~---~~---~~~~l~~~lv-------~~~l~D~~~~VR---~~a~~a~~~~i~~~------g~~~~~ 1253 (2256)
|+..+++.++...+ ++ .+..+++.+. ...+.+.+...- ...+......+... .++.+.
T Consensus 146 ~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~ 225 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFT 225 (1010)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHH
Confidence 78888888877533 11 1222222221 123334433322 22222222222211 122333
Q ss_pred chHHHHHHHhhccCCChh-----------hhhhhhhHHHHHHHHHHhhhccC-C--cc------------hHHHHHHHHH
Q 000098 1254 LLFPIFENYLNKKASDEE-----------KYDLVREGVVIFTGALAKHLAKD-D--PK------------VHAVVDKLLD 1307 (2256)
Q Consensus 1254 ~Ll~~l~~~L~~~~~~~~-----------~~~~vr~~av~~L~~La~~l~~~-~--~~------------i~~il~~Ll~ 1307 (2256)
.-+..+...++.+-+.+. ..-..+.=|.-.|..+++...+. . ++ ...+++.+++
T Consensus 226 ~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk 305 (1010)
T KOG1991|consen 226 SWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLK 305 (1010)
T ss_pred HHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443222110 11113334555555555433221 1 11 1112222222
Q ss_pred HcC---C---CCHHHHHHHH----Hhh--HHhHHhhcCchH--------------------------HHHHHHHHHHhcC
Q 000098 1308 VLN---T---PSEAVQRAVS----SCL--SPLMQSMQDEAP--------------------------TLVSRLLDQLMKS 1349 (2256)
Q Consensus 1308 ~L~---~---~~~~Vq~~~~----~~L--~~lv~~~~~~~~--------------------------~~l~~Ll~~L~~~ 1349 (2256)
.+. . -++.|-.-+. .|. ....+.++++.. ++++.-++..-+.
T Consensus 306 ~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~ 385 (1010)
T KOG1991|consen 306 ILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDG 385 (1010)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhccc
Confidence 111 1 0111111110 110 000111112221 2222211111111
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--CchHhHHH
Q 000098 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVIQ 1420 (2256)
Q Consensus 1350 ~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~-------~~~~~~~Re~al~al~~L~~~l~~--~~~pyv~~ 1420 (2256)
+.-+.+|...+-.+++..|.+.+. .+++++.+.+. +.++++..+||+.+++.+++.+.+ .+..-+..
T Consensus 386 --~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~ 461 (1010)
T KOG1991|consen 386 --YSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY 461 (1010)
T ss_pred --CCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH
Confidence 112347778888888888888775 78888887765 356889999999999999988753 22333333
Q ss_pred -HHHHHHHHcCCCcHHHHHHHHHHHHHHH-hhhhHhh-HHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhCh---hhH
Q 000098 1421 -MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQL 1493 (2256)
Q Consensus 1421 -llp~ll~~l~D~~~~VR~aa~~al~~l~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p---~~l 1493 (2256)
++++++..+.++.-..|..|++.+..+. -.++..+ ....+.....++. |.+.-+|..|+.+|..+....+ +.+
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 5678888899999999999999999887 3344443 3667777777777 7888899999999999998876 448
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-HHHHhhcCc--hhH-HhHHHHHHhhhCC---CChhHH----HHHHHHHh
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMGLTD---PNDHTK----YSLDILLQ 1562 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~i-~~lv~~Ll~~l~d---~~~~vr----~al~~L~~ 1562 (2256)
++++|.++..++.+.++.+.+.-....+.+ ..+++.+.+ .++ +.+...+++++.+ .++... .|+..|..
T Consensus 542 ~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 899999999999999887766655554433 455554432 122 6677777777764 111111 12222211
Q ss_pred -------cccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHH
Q 000098 1563 -------TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2256)
Q Consensus 1563 -------~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~V 1635 (2256)
......+....-+.+.|++...+...-.+.-..++.++..+.-. .+++.|-+-++++.+.+++.+.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~~---- 694 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQDD---- 694 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhhh----
Confidence 00111111112234455555555554445555555554444321 1334454445555555554442
Q ss_pred HHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC--CCHHHH
Q 000098 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVR 1713 (2256)
Q Consensus 1636 R~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~--~~~~vR 1713 (2256)
|-+|+++++|.+-+.+.-+... ... ...+...+...+.+.+++ ....-.
T Consensus 695 ---------------~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~ 745 (1010)
T KOG1991|consen 695 ---------------GIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDC 745 (1010)
T ss_pred ---------------hHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHH
Confidence 2357888888887666543321 000 012333344444444444 244556
Q ss_pred HHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d 1748 (2256)
..++..+..+...++.....|++.++...+..+..
T Consensus 746 ~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 746 ESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 67788888888877777777877777777777766
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-07 Score=125.00 Aligned_cols=468 Identities=13% Similarity=0.094 Sum_probs=300.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
.+.+.+.+++..+ +...|.-....+...++.- .....-.++.+.+.+.|+++.+|-.|..++..+. .+.-++
T Consensus 68 ~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~----pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e 139 (746)
T PTZ00429 68 YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQ----PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLE 139 (746)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHH
Confidence 3555666677665 7788876655444443321 2224456788888999999999998877766542 334457
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch--hH
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI 1535 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i 1535 (2256)
.+++.+.+.+.|.+..+|+.|+.++..+....|+.+.. ..+++.+.+++.|+++.|..+|..+|..+.+..++. ..
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~ 217 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS 217 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH
Confidence 78888899999999999999999999998877765322 256777888899999999999999999997654332 12
Q ss_pred HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
...+..++..+.+-++..+ ..++.+.. +.+ .+......++..+...+++.++.|...|+.++-.+.... ++..+.
T Consensus 218 ~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P-~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~ 293 (746)
T PTZ00429 218 NEWVNRLVYHLPECNEWGQLYILELLAA--QRP-SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIE 293 (746)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHh--cCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHH
Confidence 4555666666665555443 34555543 222 122334567777888888999999999888887776422 111122
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2256)
.....+.+.+..+ ....+++|..+.+.+..++.... ..+..-+..++-.. +|+.+ +|......+..+ ...+..
T Consensus 294 ~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~~-~Dp~y-IK~~KLeIL~~L---ane~Nv 366 (746)
T PTZ00429 294 RCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVRY-SDPPF-VKLEKLRLLLKL---VTPSVA 366 (746)
T ss_pred HHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhccc-CCcHH-HHHHHHHHHHHH---cCcccH
Confidence 2233333444444 45678999999999988886432 22222222222222 23333 555555554444 345566
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchh
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~ 1774 (2256)
..++..+...+.+.+...+..++.++|.++..+.. ..+.++..+++.+.+..+.+. .++..++.|++.|....
T Consensus 367 ~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~~-- 439 (746)
T PTZ00429 367 PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPELL-- 439 (746)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccHH--
Confidence 77888888888889999999999999999977654 445666777777766544443 46777888887776432
Q ss_pred chHHHHHhhc--CC-CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH
Q 000098 1775 LLLPAVEDGI--FN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2256)
Q Consensus 1775 ~llp~L~~~l--~d-~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2256)
+++.+.+.. .+ .+...|.+.+-.+|+....+ +. -.+++..+..
T Consensus 440 -il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I--------------------~~-------------a~~~L~~~i~ 485 (746)
T PTZ00429 440 -MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI--------------------EN-------------GKDIIQRFID 485 (746)
T ss_pred -HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH--------------------hh-------------HHHHHHHHHh
Confidence 445555432 11 34556777777777764211 00 0123333333
Q ss_pred HhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000098 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2256)
Q Consensus 1852 ~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL 1909 (2256)
...+....||-+.+.+...+.-..|...++.+..++.... -.+.++++|..|..-.
T Consensus 486 ~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t--~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 486 TIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVT--THSDDPDVRDRAFAYW 541 (746)
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--hcCCChhHHHHHHHHH
Confidence 3445567788888887777777777666665655554432 1356788998876543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-07 Score=126.29 Aligned_cols=496 Identities=12% Similarity=0.071 Sum_probs=313.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcc-hHHH
Q 000098 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAV 1301 (2256)
Q Consensus 1223 ~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~-i~~i 1301 (2256)
+.|.+++..-|..++......+.. |. .+..+++-+-+++... +-.+|.-+...+...++. .|. .--.
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~-G~-DvS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya~~----~pelalLa 106 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTM-GR-DVSYLFVDVVKLAPST------DLELKKLVYLYVLSTARL----QPEKALLA 106 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHC-CC-CchHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccc----ChHHHHHH
Confidence 345566666666666655555543 33 3556666666665431 125666666666555542 333 2345
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~ 1381 (2256)
+..+.+.+.++++.+|-.+.+++..+. .+..-+++...+.....+.++-||+.|+.|+..+.+..+ +......+.+
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~ 182 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKK 182 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHH
Confidence 678888999999999987766655432 223334444444555567789999999999999987554 3332335677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH--hhHHhH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLV 1459 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~--~~v~~i 1459 (2256)
.+.+.+.|. ++.+.-.|+.++..+.+..++.+. .....+..++..+.+-++.-+-...+.+ ....+. .....+
T Consensus 183 ~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~i 257 (746)
T PTZ00429 183 DLVELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETL 257 (746)
T ss_pred HHHHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHH
Confidence 888877655 899998999988888876554332 2333445556666665665555444444 332222 234678
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~-p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
+..+...+.+.+.-+-.+|+.++-.+.... ++.....+..+.+.++.+ ..+++++|..+...+..+....+ ..+...
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~ 335 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN 335 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH
Confidence 888888888888888888888887776543 233333344454555555 45678999999999988887542 233444
Q ss_pred HHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+..+.-..+||.. ++ ..++.|.... +......++..+.....+.+.+.++.+...++.++.-+ ....
T Consensus 336 ~~~Ff~~~~Dp~y-IK~~KLeIL~~La-----ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~------~~~a 403 (746)
T PTZ00429 336 LDSFYVRYSDPPF-VKLEKLRLLLKLV-----TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV------DSVA 403 (746)
T ss_pred HHhhhcccCCcHH-HHHHHHHHHHHHc-----CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC------hHHH
Confidence 6666667788864 54 4666665421 22345567778888888889999999999999998632 2234
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHhcHhHHH
Q 000098 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L--~~~~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2256)
+..+..|..++.+....+ ..++..+..+.+..... .+++.+...+ ..-.++..|.+.++-+|+.+..... ..
T Consensus 404 ~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~---~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~ 477 (746)
T PTZ00429 404 PDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL---LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GK 477 (746)
T ss_pred HHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH---HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HH
Confidence 556677777776654433 35667777776654432 2455555543 2224455677777888988765532 34
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHH
Q 000098 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHV 1763 (2256)
Q Consensus 1696 ~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L-~-d~~~~VR~~Al~al~~ 1763 (2256)
.++..++....+.++.||-..+.+..-+....+++.. ..+..++..+ . +.+++||+.|.--++.
T Consensus 478 ~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 478 DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 4555556666677889998888777766555544333 3344444333 3 5678999988654443
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-09 Score=135.50 Aligned_cols=235 Identities=16% Similarity=0.170 Sum_probs=147.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHHHHhhcCCCCCCCh--Hh
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY--SG 1134 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~~~~~~~~--~~ 1134 (2256)
..+.+|..++++|.|++||++..+|++.... ++...+... -+++-.++.+.+ ++
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~------h~~~~~~~~------------------led~~~rll~v~~Ldr 132 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKT------HGDSLSYEL------------------LEDLLIRLLCVLALDR 132 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHH------hcchhhHHH------------------HHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999877522 333333311 222233333444 56
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccCC
Q 000098 1135 LFKALS-HSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD 1212 (2256)
Q Consensus 1135 ll~~l~-~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~~ 1212 (2256)
+-+|++ +..++||+++||+|+...+. .+..+...++.+..+.. .+.|+.|+|...+++|......+..
T Consensus 133 f~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~----------q~~w~ir~Ggll~iky~~air~d~l 202 (1549)
T KOG0392|consen 133 FGDFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLR----------QPNWEIRHGGLLGIKYNVAIRQDLL 202 (1549)
T ss_pred hcccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHc----------CcchhheechHHHHHHHHHHHHHHH
Confidence 667776 45889999999999999865 55667777777777632 3579999999999999987443321
Q ss_pred ---hhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhh---ccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHH
Q 000098 1213 ---LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGA 1286 (2256)
Q Consensus 1213 ---~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~ 1286 (2256)
.+.++++. .+++.|.+++||..+......+.... ....+..++..+|..+...+.. . .-....+..+.+
T Consensus 203 ~~~~~~vl~~~-i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl-~---~s~~si~~ll~~ 277 (1549)
T KOG0392|consen 203 FQLLNLVLDFV-IEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDL-S---SSTASIMHLLDE 277 (1549)
T ss_pred HHHHHHHHHHH-HhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhc-c---hhhHHHHHHHHH
Confidence 23445554 37999999999999987655444433 2234556666666665442111 0 112233445555
Q ss_pred HHhhhc-----cCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHh
Q 000098 1287 LAKHLA-----KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2256)
Q Consensus 1287 La~~l~-----~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~ 1330 (2256)
++.+.. ........++++++..+.+.-..++.++.+.+..+...
T Consensus 278 l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 278 LCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554321 00001124566677777766667777776666655543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-10 Score=136.60 Aligned_cols=378 Identities=17% Similarity=0.163 Sum_probs=266.1
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh----H-HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQG----V-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~----v-~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
.++..+...+...+-.+..++..+.+.-.... + ..++|.+++.+. +.+...+..|..+|..+|.+..++.....
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 33333333444446666667766654432211 1 467899999997 66789999999999999998877654333
Q ss_pred -hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc---hhH-HhHHHHHHhhhCCCCh--hHHHHHHHHHhc-ccc-cC
Q 000098 1498 -PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI-ASLVPTLLMGLTDPND--HTKYSLDILLQT-TFV-NT 1568 (2256)
Q Consensus 1498 -~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i-~~lv~~Ll~~l~d~~~--~vr~al~~L~~~-~~~-~~ 1568 (2256)
...+|.++.++.+++..|+..|.|||++++..-.. -.+ ...++.|+..+..+.. ..|.+..+|.+. ... +.
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 26889999999999999999999999999865321 112 4567778888877764 556655555441 111 11
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2256)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~ 1647 (2256)
-.......++|.+.+++.+.++++...+|.++..+... ..+.+.-.+ ..++|.|..++..+.+.++..|.+++|.++
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 11235677899999999999999999999999999863 222222222 357899999999999999999999999977
Q ss_pred HhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-HHHHHHHHHHhccCCCHHHHHHHHHH
Q 000098 1648 RGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASVRDGYLTL 1719 (2256)
Q Consensus 1648 ~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l~~ll~~ll~~l~~~~~~vR~~al~~ 1719 (2256)
.+-+.. .-...+|.|...+........|..+++.++.|..+.... . -..++|.++..++..+...|..++++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 543321 123477888888886666668999999999998855433 1 25789999999999999999999999
Q ss_pred HHHhHhhhChhHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---hc---cchhch------HHHHHhhcC
Q 000098 1720 FKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHY---AT---TSLPLL------LPAVEDGIF 1785 (2256)
Q Consensus 1720 l~~La~~~g~~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~---~~---~~~~~l------lp~L~~~l~ 1785 (2256)
++.++....++-..|+- .+++++...|.-.+..+-..++.++..|.+.- +. ..+..+ +..++..-.
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~ 467 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS 467 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc
Confidence 99988776666566663 58899999997777766667777777765432 21 111111 222333334
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 000098 1786 NDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1786 d~~~~iR~~sv~llg~ll 1803 (2256)
++|..+...+...++...
T Consensus 468 hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 468 HENEEIYKKAYKIIDTYF 485 (514)
T ss_pred cccHHHHHHHHHHHHHhc
Confidence 577778888888877763
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-10 Score=157.65 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=196.7
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2256)
.++.++..+.|+++.||..|..++..+. -+..+|.|...+.|+++.+|..|+..|+.+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 3556677888999999999998887763 244678888889999999999999999887653322
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHH
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
.+.+...|.|+++.||.+|+.+|+.+... + ...++..+.|++..+| .++..|.... . .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~------~~~l~~~L~D~d~~VR~~Av~aL~~~~------~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAG--D------AALFAAALGDPDHRVRIEAVRALVSVD------D------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccC--C------HHHHHHHhcCCCHHHHHHHHHHHhccc------C------cH
Confidence 23566678889999999999999887421 1 1245677888888887 4777776421 1 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHH
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~li 1659 (2256)
.+...+.|.++.+|..++..++.+... .. ..++.|..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--GA--------PAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--cc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778888999999988888877541 11 125667788889999999999888887642 1 2344
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~il 1739 (2256)
+.+...|.+ +++.+|..++.+|+.+. . +..++.++..+.|+++.||..++.+++.+. ++ +...
T Consensus 810 ~~l~~aL~d-~d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRA-SAWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcC-CChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 556666665 56778888888887642 1 234567777888888999998888888751 11 2355
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH
Q 000098 1740 PAILDGLADENESVRDAALGAGH 1762 (2256)
Q Consensus 1740 p~Ll~~L~d~~~~VR~~Al~al~ 1762 (2256)
+.+...++|+++.||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 66778888888888888888765
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-09 Score=130.49 Aligned_cols=349 Identities=17% Similarity=0.165 Sum_probs=236.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---cccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g---~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
.+.++..+.++ +...+..+.+.+..+...-. .+.+....+++.+.+.+....++..+..|.+++..|+.+....-.
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 33444444444 35556667777766665432 122223368888888888776899999999999999987654323
Q ss_pred HhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh---hH-HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhC
Q 000098 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1416 pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---~v-~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~ 1489 (2256)
-++. ..+|.+..++..++..|++.|.+|++.++..-+.. -+ ...+++++..+.... ....+.+..+|..++.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 3332 47899999999999999999999999998765542 12 356778888777544 467777889999999886
Q ss_pred -hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC
Q 000098 1490 -PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2256)
Q Consensus 1490 -p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~ 1568 (2256)
|..--..+..++|.|..++.+.+++|...||||+..+...- ++.++.++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~vi----------------------------- 276 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMVI----------------------------- 276 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHH-----------------------------
Confidence 44434566789999999999999999999999999987642 22222111
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 000098 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSL 1646 (2256)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L 1646 (2256)
-..++|.+...|.+.+..++.-|..++||+.. ++..... -.-...+|.|..++. .+...+|..|+.+++.+
T Consensus 277 -----~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 277 -----DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred -----HccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 01234445555555555555555556666543 2111100 012346788888887 66677999999999999
Q ss_pred HHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH--HHHHHHHHHhccCCCHHHHHHHH
Q 000098 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF--EHILPDIIRNCSHQRASVRDGYL 1717 (2256)
Q Consensus 1647 ~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l--~~ll~~ll~~l~~~~~~vR~~al 1717 (2256)
..+-.++ .-..++|.|+..|+.. +...|..|+++++.+..+...+ |+ .++++.+...+.-.+..+-..++
T Consensus 350 tAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~L 428 (514)
T KOG0166|consen 350 TAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVAL 428 (514)
T ss_pred hcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHH
Confidence 8733222 1236899999999884 4779999999999988766555 22 45677777777656666666666
Q ss_pred HHHHHhHhh
Q 000098 1718 TLFKYLPRS 1726 (2256)
Q Consensus 1718 ~~l~~La~~ 1726 (2256)
.++..+-..
T Consensus 429 d~l~nil~~ 437 (514)
T KOG0166|consen 429 DGLENILKV 437 (514)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=129.84 Aligned_cols=149 Identities=21% Similarity=0.184 Sum_probs=75.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp 1461 (2256)
.+...+.++ +..+|..+..+|+.+.. ..+++.+...+.|+++.+|..+.++++.+...- ......+|
T Consensus 27 ~L~~~L~d~-d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~~~~a~~ 93 (280)
T PRK09687 27 ELFRLLDDH-NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RCQDNVFN 93 (280)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cchHHHHH
Confidence 344444444 56666666665544321 234444555556666666666666666653210 00123455
Q ss_pred HHHHh-ccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000098 1462 SLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2256)
Q Consensus 1462 ~Ll~~-L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 1540 (2256)
.+... +.|++|.+|..++.+||.+....+. ..+.+++.+...+.|+++.||..+..+|+.+.. ...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHHHH
Confidence 55544 4556666666666666665322111 123444555555666666666666666654421 12344
Q ss_pred HHHhhhCCCChhHH
Q 000098 1541 TLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1541 ~Ll~~l~d~~~~vr 1554 (2256)
.|+..+.|++..+|
T Consensus 163 ~L~~~L~d~~~~VR 176 (280)
T PRK09687 163 LLINLLKDPNGDVR 176 (280)
T ss_pred HHHHHhcCCCHHHH
Confidence 44444555544444
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=151.60 Aligned_cols=275 Identities=25% Similarity=0.291 Sum_probs=202.9
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHH
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~ 1699 (2256)
-++.|...|.|+++.||..|+.+|+.+.. +..++.|...|. +++..+|..++.+|+.+...... .+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~~------~~ 687 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLPP------AP 687 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCc------hH
Confidence 45677788899999999999999987642 457788888885 46777999999999887543322 23
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHH
Q 000098 1700 DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPA 1779 (2256)
Q Consensus 1700 ~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~ 1779 (2256)
.+...+.++++.||..++..++.+.. +. .+.++..+.|+++.||..|..++..+ +. .+.
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~----~~------~~~ 746 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSV----DD------VES 746 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcc----cC------cHH
Confidence 45566778999999999998887541 11 12456788999999999999998764 11 134
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHH
Q 000098 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2256)
Q Consensus 1780 L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2256)
+...+.|+++.+|..+++.|+.+.. ++ . ..+..|.....|.+..
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~---------------~~-~--------------------~~~~~L~~ll~D~d~~ 790 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGA---------------GG-A--------------------PAGDAVRALTGDPDPL 790 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcc---------------cc-c--------------------hhHHHHHHHhcCCCHH
Confidence 5667889999999999999987620 00 0 0122334456788899
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhh
Q 000098 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR 1939 (2256)
Q Consensus 1860 Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~v 1939 (2256)
||.+|+..++.+.. +. .+.+.+...+.++++.+|..|+.+|+.+.. +..++.|...+.|+++.+
T Consensus 791 VR~aA~~aLg~~g~--~~-------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 791 VRAAALAALAELGC--PP-------DDVAAATAALRASAWQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDV 854 (897)
T ss_pred HHHHHHHHHHhcCC--cc-------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHH
Confidence 99999999987633 11 112334555689999999999999987532 455677888889999999
Q ss_pred HHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000098 1940 RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2256)
Q Consensus 1940 R~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~ 1991 (2256)
|..+..+|+.+ -+. +...+.+..++.|.+++||..|..++..
T Consensus 855 R~~A~~aL~~~---~~~-------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 855 RKAAVLALTRW---PGD-------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHhcc---CCC-------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999875 111 2356777789999999999999988753
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=130.18 Aligned_cols=251 Identities=12% Similarity=0.045 Sum_probs=188.0
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Iv 1501 (2256)
++.+...+.|++..||..+..++..+. -..+++.+...+.+.+..+|..++.+||++...... .+..+
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~-------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~ 92 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRG-------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF 92 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC-------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH
Confidence 455666779999999999998887663 245667777778899999999999999997542111 23566
Q ss_pred HHHHHh-hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHH
Q 000098 1502 PKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1502 p~L~~~-L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
|.|... ++|+++.||..|+.+|+.++..-.. .....++.+...+.|++..+|. ++.+|+... -...++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---------~~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN---------DEAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------CHHHHH
Confidence 777766 7899999999999999998643211 2245666777888899888984 666765421 124678
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHH
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~li 1659 (2256)
.|...+.|.++.+|..|+..++.+.. . -+...+.|...+.|+++.||..|+.+||.+.. +..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~--~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av 225 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY--D--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVL 225 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC--C--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHH
Confidence 89999999999999999999988732 1 22467888889999999999999999987542 5789
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~-~~~~~vR~~al~~l~ 1721 (2256)
|.|++.|.++. +|..++.+++++. . +..+|.+.+.+. +++..++..+...+.
T Consensus 226 ~~Li~~L~~~~---~~~~a~~ALg~ig----~---~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 226 SVLIKELKKGT---VGDLIIEAAGELG----D---KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHcCCc---hHHHHHHHHHhcC----C---HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 99999988743 5777777777653 2 256777777775 678888888776654
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=0.00011 Score=95.78 Aligned_cols=683 Identities=15% Similarity=0.132 Sum_probs=332.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccchhhc
Q 000098 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2256)
Q Consensus 1300 ~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~~~~~ 1378 (2256)
.++..+..++ ++++..|+++-.-|..+ ++.+..+..+++.+.++. +..+|.+|+.-+...+...-...-. +.
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~-----~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~-~g 77 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQL-----EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA-PG 77 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHh-----hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC-CC
Confidence 3444444444 44577777555545443 345667777777776654 4567877776666554432111100 00
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
....-.+..| +++ ..+++.++. ....+|-.-..++..|..+--+..+.
T Consensus 78 --------~~~~I~e~dk-------------------~~irenIl~~iv~----~p~~iRvql~~~l~~Ii~~D~p~~Wp 126 (1010)
T KOG1991|consen 78 --------RPFGIPEEDK-------------------AVIRENILETIVQ----VPELIRVQLTACLNTIIKADYPEQWP 126 (1010)
T ss_pred --------CcCCCChHHH-------------------HHHHHHHHHHHHh----CchHHHHHHHHHHHHHHhcCCcccch
Confidence 0000001111 111 234444443 25566777677787776654446678
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh-----------hhHhhhhhhHHHHHHHhhcCCCHHHHH---HHHHHH
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-----------QQLSQCLPKIVPKLTEVLTDTHPKVQS---AGQTAL 1523 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p-----------~~l~~~L~~Ivp~L~~~L~D~~~~VR~---aA~~aL 1523 (2256)
.+++.+...+.+++-..=.+|+.++..++..-. ..+...+|.|.....+++.+++...-. ..++..
T Consensus 127 ~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKif 206 (1010)
T KOG1991|consen 127 GLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIF 206 (1010)
T ss_pred hHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 889999999998887777889999988887521 123445666666666677776543322 222222
Q ss_pred HHHHhh-cC-----chhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1524 QQVGSV-IK-----NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1524 ~~l~~~-i~-----~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
...+.. ++ +..+..-+..++..++.|-+.- -.+ .+ |. -.-...-|.+++-|.
T Consensus 207 ks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E-----------~l~-~d--------~e--~R~~~~wwK~KKWa~ 264 (1010)
T KOG1991|consen 207 KSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE-----------VLS-LD--------PE--DRSSWPWWKCKKWAL 264 (1010)
T ss_pred HHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh-----------ccc-CC--------hh--hcccccchhhHHHHH
Confidence 222211 11 0111222223333333321100 000 00 00 000123467777777
Q ss_pred HHHHHHhhhcCCCCcch------------hhhhhhhHHHHHhhcC------CCHHHHHHHHHHHHHHHHhhCcC-chHHH
Q 000098 1598 QIVGNMCSLVTEPKDMI------------PYIGLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGMGEE-NFPDL 1658 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~------------~~l~~Ll~~L~~~L~d------~~~~VR~~a~~aL~~L~~~~g~~-~~~~l 1658 (2256)
.++..+++..+++.... .|.+.++..+++.+.. -.++|-..+..-+... +... .++-+
T Consensus 265 ~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~---Vs~~~twkll 341 (1010)
T KOG1991|consen 265 HILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQC---VSHASTWKLL 341 (1010)
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh---ccHHHHHHHh
Confidence 78877777655543221 2334444444444431 1222322222222221 1111 12222
Q ss_pred HHHHHHHhhc------------------CCCHHH-------------HHHHHHHHHHHHHHhcHhHHHHHHHHHHHhcc-
Q 000098 1659 VSWLLDALKS------------------DNSNVE-------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCS- 1706 (2256)
Q Consensus 1659 ip~Ll~~L~~------------------~~~~~~-------------R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~- 1706 (2256)
-|.+--.+.+ |+..-. +.++...+-.++..-|++.+.++++.+...++
T Consensus 342 ~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~ 421 (1010)
T KOG1991|consen 342 KPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTR 421 (1010)
T ss_pred hhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh
Confidence 2222111111 111112 23445557777788888888888888887765
Q ss_pred -----C--CCHHHHHHHHHHHHHhHhhhChh--HHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-Hhhccchhc
Q 000098 1707 -----H--QRASVRDGYLTLFKYLPRSLGVQ--FQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVE-HYATTSLPL 1775 (2256)
Q Consensus 1707 -----~--~~~~vR~~al~~l~~La~~~g~~--f~~yl~-~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~-~~~~~~~~~ 1775 (2256)
. .++.-+++++.++|.++..+-.. +..-++ -+.+.++..++++.-..|..|+..+..+.. .+..
T Consensus 422 ~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d----- 496 (1010)
T KOG1991|consen 422 YKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD----- 496 (1010)
T ss_pred hcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC-----
Confidence 2 36778899999999999776542 222222 133444445555544555554444433220 0000
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc-
Q 000098 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS- 1854 (2256)
Q Consensus 1776 llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~- 1854 (2256)
.. ...+.+...+.++.
T Consensus 497 --------------------------------------------------~~-------------~l~~ale~t~~~l~~ 513 (1010)
T KOG1991|consen 497 --------------------------------------------------PN-------------NLSEALELTHNCLLN 513 (1010)
T ss_pred --------------------------------------------------hH-------------HHHHHHHHHHHHhcc
Confidence 00 01122233334443
Q ss_pred CCcHHHHHHHHHHHHHHHhcCh---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchh---chHHHH
Q 000098 1855 DVSLSVRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPIL 1928 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~---~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~---~llp~L 1928 (2256)
|....||-.|+-++..+..+.+ ..+++++|.+++.+.+..+.-+.+. -..++..++..+++...| ++...|
T Consensus 514 d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~L 590 (1010)
T KOG1991|consen 514 DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNL 590 (1010)
T ss_pred CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 7777788888888988888876 5699999999999887765544332 223444445444443211 111111
Q ss_pred hhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH------Hhc--
Q 000098 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC---DSILEVRESAGLAFSTLFK------SAG-- 1997 (2256)
Q Consensus 1929 ~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~---D~~~~VR~~A~~al~~l~~------~~g-- 1997 (2256)
. ....+++. |.++..-..+..|.|.+.. .+.
T Consensus 591 a--------------------------------------~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 591 A--------------------------------------ETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH 632 (1010)
T ss_pred H--------------------------------------HHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 11111111 1222222222222222211 000
Q ss_pred hhhH----HhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHh
Q 000098 1998 MQAI----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073 (2256)
Q Consensus 1998 ~~~~----~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~ 2073 (2256)
+..+ ..++|.+...|.++-. ...+.+-+++.. -++..+.++...++.+.-+.+++...-..|+.
T Consensus 633 p~vl~~le~~~l~vi~~iL~~~i~--dfyeE~~ei~~~----------~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~ 700 (1010)
T KOG1991|consen 633 PEVLKQLEPIVLPVIGFILKNDIT--DFYEELLEIVSS----------LTFLSKEISPIMWGLLELILEVFQDDGIDYFT 700 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhh----------hhhhhcccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 0000 1122222222222210 111111111110 01111122223556666666666555566666
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHHHHhchhhhhhhH
Q 000098 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDN--QASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2256)
Q Consensus 2074 ~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~--~~~vR~~A~~~l~~l~~~~~~~~~~y~ 2151 (2256)
.++|.+-+.+.-..+.+.. ...+...+...+...+.++ ...-+..|+..+..++.+++..+..|+
T Consensus 701 d~~~~l~N~vt~g~~~~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~i 767 (1010)
T KOG1991|consen 701 DMMPALHNYVTYGTPSLLS-------------NPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYI 767 (1010)
T ss_pred HHHHHHhhheeeCchhhhc-------------cchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHh
Confidence 6666665554322211110 1133344444445555543 355688899999999988877888899
Q ss_pred HHHHHHHHHHcCC--CChHHHHHHHHHHHH
Q 000098 2152 PNMISTLIVLLSD--SDSTTVAAAWEALSR 2179 (2256)
Q Consensus 2152 ~~il~~L~~~l~D--~d~~Vr~~A~~aL~~ 2179 (2256)
+.++...+..+.+ .+...|..+.+-.-.
T Consensus 768 plf~~~a~~~l~~~~e~s~~~~~~leVvin 797 (1010)
T KOG1991|consen 768 PLFLELALSRLTREVETSELRVMLLEVVIN 797 (1010)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999988888866 555666665554443
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-06 Score=109.19 Aligned_cols=640 Identities=17% Similarity=0.173 Sum_probs=330.2
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHH--------HHHHHhhcC--
Q 000098 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA--------AEDIWDRYG-- 1125 (2256)
Q Consensus 1056 ~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~--------~~~~w~~~~-- 1125 (2256)
.+.+..+|+|.+|||.++|.+|+.+|+..... +.....+..+- +.++..-.-|+. -...|..+.
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~-----~~f~~aL~~va-~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~ 76 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELT-----EGFGVALAEVA-ANKDASLPLRQIALVLLKRYIEKHWSPNFEA 76 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccc-----hHHHHHHHHHH-hCcccCchHHHHHHHHHHHHHHHhCCChHhh
Confidence 35788899999999999999999999987622 11223334432 445555555555 445775432
Q ss_pred CCCCC----C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhH
Q 000098 1126 YDFGT----D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2256)
Q Consensus 1126 ~~~~~----~----~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~ 1195 (2256)
++-+. + + ..++..+-+++..+|.+++.++..++. .||+.|++++..+..+... .+-..=+
T Consensus 77 fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~ 146 (1005)
T KOG2274|consen 77 FRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIH 146 (1005)
T ss_pred ccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhh
Confidence 12111 1 2 456666778899999999999999875 5999999999999987531 1223457
Q ss_pred HHHHHHHHhhhhhcc--------CChhHhHHHHHHhhcCCCCHHHHHHH-----HHHHHHHHHhhcc-------ccccch
Q 000098 1196 GIALALHSAADVLRT--------KDLPVIMTFLISRALADTNADVRGRM-----LNAGIMIIDKHGR-------DNVSLL 1255 (2256)
Q Consensus 1196 ~~~~aL~~l~~~~~~--------~~~~~l~~~lv~~~l~D~~~~VR~~a-----~~a~~~~i~~~g~-------~~~~~L 1255 (2256)
+++.+|..+..-... -..+.+.... ......+..-|..+ ...+...+..++. ..+..+
T Consensus 147 ~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f--~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~ 224 (1005)
T KOG2274|consen 147 GAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIF--ALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQI 224 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccchhhhhhhh--hhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 778787776542211 1112211111 11122222222222 2334444444432 123444
Q ss_pred HHHHHHHhhccCCChh-hhhhhhhHHHHHHHHHHhhhccC-CcchHHHHHHHHHHcC------------C------C---
Q 000098 1256 FPIFENYLNKKASDEE-KYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLN------------T------P--- 1312 (2256)
Q Consensus 1256 l~~l~~~L~~~~~~~~-~~~~vr~~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~------------~------~--- 1312 (2256)
++.+...+.+.-+... .+-..|.....++..+.+.++.. .|.....++..+..+. . +
T Consensus 225 l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~d 304 (1005)
T KOG2274|consen 225 LNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYD 304 (1005)
T ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccC
Confidence 5555555444211110 12245666666777666665432 2222222222221110 0 0
Q ss_pred CHHHHHHHHHh-------hHHhHHh------hcCchHHHHHHH--HHHHh----------------cC-CCHHHHHHHHH
Q 000098 1313 SEAVQRAVSSC-------LSPLMQS------MQDEAPTLVSRL--LDQLM----------------KS-DKYGERRGAAF 1360 (2256)
Q Consensus 1313 ~~~Vq~~~~~~-------L~~lv~~------~~~~~~~~l~~L--l~~L~----------------~~-~~~~vR~~Aa~ 1360 (2256)
+...++.+-.| +..++.. .....++.+..+ +..+. ++ +.+.+|..+--
T Consensus 305 sd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd 384 (1005)
T KOG2274|consen 305 SDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRD 384 (1005)
T ss_pred CchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHH
Confidence 00111111111 1111111 111122222211 11111 11 12456666666
Q ss_pred HHHHHHhhhCcccchhhcHHHH----HHH-----HHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC
Q 000098 1361 GLAGVVKGFGISSLKKYGIAAT----LRE-----GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2256)
Q Consensus 1361 ~L~~lv~~~g~~~~~~~~il~~----L~~-----~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D 1431 (2256)
.+-.+...+|..... .+... +.. ...++..|...++.+.+.+... .++.-..++..+...+...+.-
T Consensus 385 ~~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~ 460 (1005)
T KOG2274|consen 385 LLLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVY 460 (1005)
T ss_pred HHHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhccc
Confidence 666677766654443 22222 111 1123334555655555444433 2322334455555555555443
Q ss_pred -CcHHHHHHHHHHHHHHHhh--hhHhhHHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh
Q 000098 1432 -QVVAVREAAECAARAMMSQ--LSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507 (2256)
Q Consensus 1432 -~~~~VR~aa~~al~~l~~~--l~~~~v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~ 1507 (2256)
..+..--.+..++..+... ..+.-...++...+..+. +...-.|.+|+..+...+ .++.+.+.+|.|+..+.++
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~ql 538 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQL 538 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHH
Confidence 2343333555666554443 122223455555556655 566667888887766544 5677788899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCch-------hHHhHHHHHHhhhCCCCh--hHHHHHHHHHhcccccCCChhhHhhHH
Q 000098 1508 LTDTHPKVQSAGQTALQQVGSVIKNP-------EIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2256)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~i~~~-------~i~~lv~~Ll~~l~d~~~--~vr~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2256)
..+...+|-....++|...++.=+.. .....+..+.+..+||.- .+..++..+.+. .....|.....+
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~---~~~~g~m~e~~i 615 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI---AANYGPMQERLI 615 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHhhcchHHHHH
Confidence 99999999999999999888753211 113344455666677721 112344444431 111223445677
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHHhhhcCCCCcc-hhhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhh--
Q 000098 1579 PIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDM-IPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGM-- 1650 (2256)
Q Consensus 1579 p~L~~~L~d~~----~~vR~~a~~~l~~L~~~l~~~~~l-~~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~-- 1650 (2256)
|.+...+.... +..-..+..++..+.+. .+..+ ........|.+.++.- ..+-.+-..+-.|+..+...-
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~--tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRN--TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhc--CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 88888776544 45556667777777763 33222 2233445666655543 344555567788888877641
Q ss_pred ------CcC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccC-CCHHHHHHHHH
Q 000098 1651 ------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSH-QRASVRDGYLT 1718 (2256)
Q Consensus 1651 ------g~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~-~~~~vR~~al~ 1718 (2256)
++. .+-.++..+-+.|..+.+...-..+..-+..++...|.+ .++.++..++..++. ....+-+..+.
T Consensus 694 q~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~ 773 (1005)
T KOG2274|consen 694 QLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIM 773 (1005)
T ss_pred HHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111 234666666655655433311111112245555556654 345566666555543 34555555555
Q ss_pred HHHHhH
Q 000098 1719 LFKYLP 1724 (2256)
Q Consensus 1719 ~l~~La 1724 (2256)
.|..+.
T Consensus 774 VfahL~ 779 (1005)
T KOG2274|consen 774 VFAHLV 779 (1005)
T ss_pred HHHHHh
Confidence 555443
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=0.00065 Score=87.98 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=101.0
Q ss_pred CCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcc---hhcHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHH
Q 000098 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVGDNQ---ASIRRSSAYLIGYF 2139 (2256)
Q Consensus 2066 ~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l~~~~---~~vR~~A~~~l~~l 2139 (2256)
+.+.|.++.++|.|+++++-+|..+|-.+..++...+...+ .++++.++|.++..-.|.+ ..+|..|+.+++.+
T Consensus 901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL 980 (1030)
T KOG1967|consen 901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNAL 980 (1030)
T ss_pred HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999887543 4889999999999887766 67999999999999
Q ss_pred HHhch-hhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q 000098 2140 YKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2140 ~~~~~-~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
.+..+ ..+.+|.+.+++.+.+.|+|+..-||+.|..|=....
T Consensus 981 ~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 981 TRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred hccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 98554 4577899999999999999999999999988866653
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=0.00069 Score=86.64 Aligned_cols=300 Identities=15% Similarity=0.153 Sum_probs=173.7
Q ss_pred hccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1410 l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
+++.|+.++...++.+.+.+.-+++..+....++ .++ -..|...|+.+.-.+..-
T Consensus 224 iPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~--------------~~l-----------~~lka~ICEi~~LY~~kY 278 (960)
T KOG1992|consen 224 IPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEA--------------TVL-----------DKLKAQICEIFNLYATKY 278 (960)
T ss_pred chHHHHhhHHHHHHHHHHHHhccCcccccCcccc--------------cHH-----------HHHHHHHHHHHHHHHHhh
Confidence 4556777777778877777664444332210000 000 123445577777667777
Q ss_pred hhhHhhhhhhHHHHHHHhhcCCCHHHHH--HHHHHHHHHHhhcCchhH------HhHHHHHHhhhCCCChhHHHHHHHHH
Q 000098 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQS--AGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2256)
Q Consensus 1490 p~~l~~~L~~Ivp~L~~~L~D~~~~VR~--aA~~aL~~l~~~i~~~~i------~~lv~~Ll~~l~d~~~~vr~al~~L~ 1561 (2256)
++.+..++++++.....++.+..+..|. -++.|+.-+..+...+.. +.++..+.+...=|+-..|..-..+.
T Consensus 279 eEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElF 358 (960)
T KOG1992|consen 279 EEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELF 358 (960)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHh
Confidence 8888889999998888888776655554 455666666665544322 34444454444444333332111111
Q ss_pred hcccccCCChhhHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHH-hhcC--CCHHHHH
Q 000098 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVD--PIPEVRS 1637 (2256)
Q Consensus 1562 ~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~v-R~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~-~L~d--~~~~VR~ 1637 (2256)
-...+..+.+.+...+.++ |+.|+..+..+++.. +. .+.+.+..-+..++. ...+ .+|.-..
T Consensus 359 ------------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~f-e~-~vt~v~~~~v~~~l~~y~~nPS~nWk~kd 424 (960)
T KOG1992|consen 359 ------------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNF-EG-QVTGVFSSEVQRLLDQYSKNPSGNWKKKD 424 (960)
T ss_pred ------------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHh-cc-hhHHHHHHHHHHHHHHhccCCCccccccc
Confidence 1123455667776665555 567788899999864 32 222333333333322 3333 4788888
Q ss_pred HHHHHHHHHHHhhCcC---------------ch-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHH
Q 000098 1638 VAARAIGSLIRGMGEE---------------NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDI 1701 (2256)
Q Consensus 1638 ~a~~aL~~L~~~~g~~---------------~~-~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~l 1701 (2256)
.+...+.+++...+.. || ..++|.|...=. ...+..+..+..-+-.+-..+|+..+-.++|.+
T Consensus 425 ~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~~FR~ql~~~~lm~~~p~l 503 (960)
T KOG1992|consen 425 RAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIYTFRNQLGKEHLMALLPRL 503 (960)
T ss_pred hhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc-ccccchhhcccceeeeecccCChHHHHHHHHHH
Confidence 8888888887653211 11 223343322000 123334444444444455667888888999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhHhhhCh---------hHHHHHHHHHHHHHHhcCCC
Q 000098 1702 IRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLADE 1749 (2256)
Q Consensus 1702 l~~l~~~~~~vR~~al~~l~~La~~~g~---------~f~~yl~~ilp~Ll~~L~d~ 1749 (2256)
+..++.+...|-..+..++..+...-++ +..||+..++..+.+.++-+
T Consensus 504 i~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p 560 (960)
T KOG1992|consen 504 IRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP 560 (960)
T ss_pred HHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC
Confidence 9999999999999998888876654333 45677777777777666543
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.95 E-value=0.0002 Score=92.26 Aligned_cols=695 Identities=16% Similarity=0.138 Sum_probs=329.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhcc--
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRT-- 1210 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~-- 1210 (2256)
-+++....+++..+|..|+..+. +++.+-. +-..|.+... +.+.+.+.|+++..-|+........
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l~----qle~~~~-f~~aL~~va~--------~~~~sl~lRQ~A~v~L~~yie~hW~~~ 73 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQLK----QLELTEG-FGVALAEVAA--------NKDASLPLRQIALVLLKRYIEKHWSPN 73 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHHh----ccccchH-HHHHHHHHHh--------CcccCchHHHHHHHHHHHHHHHhCCCh
Confidence 45566667889999998886663 3322211 2222222211 1124567788888877776653211
Q ss_pred -----------CChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhH
Q 000098 1211 -----------KDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279 (2256)
Q Consensus 1211 -----------~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~ 1279 (2256)
++...+++..+.+++.|+|..+|.+...++..+....-++.|++++|.+.+++.. +++ .--.+
T Consensus 74 ~E~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~--~n~----n~i~~ 147 (1005)
T KOG2274|consen 74 FEAFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS--GNE----NSIHG 147 (1005)
T ss_pred HhhccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc--cch----hhhhh
Confidence 1123344444456777999999999999999998888899999999999999875 221 12356
Q ss_pred HHHHHHHHHhhhccC----C-cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCC---
Q 000098 1280 VVIFTGALAKHLAKD----D-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK--- 1351 (2256)
Q Consensus 1280 av~~L~~La~~l~~~----~-~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~--- 1351 (2256)
++.+|..+...+... . |-.-.-+.++......++...+-.++. ..++..++..+....+
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~-------------~~lf~sc~~li~~~~e~~~ 214 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAAR-------------GKLFTSCLTLITNVEEVWA 214 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhh-------------hHHHHHHHHHHhHHHHHHH
Confidence 888888877654211 1 111111122222222333222221111 1122222222222111
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL--ADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l--~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l 1429 (2256)
..+|.--.+++..+...+ .+.+ .+..+|..|...+.++..+.+.+.....||+...++.....+
T Consensus 215 ~~~~~~~s~~l~~~~~~l--------------~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~ 280 (1005)
T KOG2274|consen 215 EHVKVFLSQILNQFMDIL--------------EHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTL 280 (1005)
T ss_pred HHHHHHHHHHHHHHHHHH--------------hhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHH
Confidence 112222223333332222 1111 122367788888888888888888888888887777665433
Q ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHh----hHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC--hhhHhhhhhhHHH
Q 000098 1430 S-DQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLPKIVP 1502 (2256)
Q Consensus 1430 ~-D~~~~VR~aa~~al~~l~~~l~~~----~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~--p~~l~~~L~~Ivp 1502 (2256)
. --...+|.....+-...-.....+ .+...+-.+++.+ ..+..+. .+.+...++.+++
T Consensus 281 ~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~---------------s~i~t~~~~~~ti~~~l~~lI~ 345 (1005)
T KOG2274|consen 281 EKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFL---------------STIVTNRFLSKTIKKNLPELIY 345 (1005)
T ss_pred HHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHH---------------HHHHHHHHHHHHhhhhhHHHHH
Confidence 2 112233332211100000000000 0111111111111 1111000 0000011111111
Q ss_pred HHHH------------------hhcCC--CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHh
Q 000098 1503 KLTE------------------VLTDT--HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2256)
Q Consensus 1503 ~L~~------------------~L~D~--~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~ 1562 (2256)
.++. ...|. ...+|..+...+..+...++++.+..+....-+.+. ++-.
T Consensus 346 ~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~-------es~a---- 414 (1005)
T KOG2274|consen 346 QLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQ-------ESQA---- 414 (1005)
T ss_pred HHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHH-------HHHH----
Confidence 1111 11111 123444444444444444444333322222111110 0000
Q ss_pred cccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-CCCHHHHHHHH
Q 000098 1563 TTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAA 1640 (2256)
Q Consensus 1563 ~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~-d~~~~VR~~a~ 1640 (2256)
...+... .|..... .+...+. +........++..+...+...+. ...|..-..+.
T Consensus 415 -------------------t~~~~~~~~wk~qea---~l~a~~~-~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~ 471 (1005)
T KOG2274|consen 415 -------------------TYLFNNESWWKIQEA---LLVAAES-VRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAF 471 (1005)
T ss_pred -------------------HHHhcchHHHHHHHH---HHHHHhh-cccCcchHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 0001111 1221111 1111111 11111223445555555555544 34555555677
Q ss_pred HHHHHHHHh--hCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHH
Q 000098 1641 RAIGSLIRG--MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRD 1714 (2256)
Q Consensus 1641 ~aL~~L~~~--~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~ 1714 (2256)
.+++.+... ..+..+..++......+..+.....|.++..++...+ +...+ +.++..+++.+.+.+..+-.
T Consensus 472 ~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~ 548 (1005)
T KOG2274|consen 472 LTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLV 548 (1005)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHH
Confidence 777766665 3344455666666666766666667887777766555 44433 45555666666666777777
Q ss_pred HHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHH---HhhccchhchHHHHHhhcCCCC
Q 000098 1715 GYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLA--DENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFNDN 1788 (2256)
Q Consensus 1715 ~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~--d~~~~VR~~Al~al~~iv~---~~~~~~~~~llp~L~~~l~d~~ 1788 (2256)
..+.+++.+++.- +.|..-. ..+.|..+..+. .++|.|-..+...+..+.+ ++|+ .....+|.+...+.-++
T Consensus 549 llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 549 LLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP-MQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHcCcc
Confidence 7777777666543 3333222 234444433221 2234666666555555443 3332 12234555544433222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000098 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868 (2256)
Q Consensus 1789 ~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l 1868 (2256)
|.. .......++.++
T Consensus 627 ~~~-----------------------------------------------------------------~~~l~~~aidvL 641 (1005)
T KOG2274|consen 627 DKA-----------------------------------------------------------------PAGLCAIAIDVL 641 (1005)
T ss_pred ccc-----------------------------------------------------------------CchhhHHHHHHH
Confidence 211 012334456677
Q ss_pred HHHHhcChhHH-HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhh--------Cccc--hhchHHHHhhhcCCC-
Q 000098 1869 KTIVANTPKTL-KEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKL--------GERV--LPSIIPILSRGLKDP- 1935 (2256)
Q Consensus 1869 ~~l~~~~~~~l-~~~l~~Ll~~L~~~L-~~~~~~~R~~A~~aL~~lv~~~--------~~~~--l~~llp~L~~~l~d~- 1935 (2256)
..++.++|+.+ ..++...++.+.++. .+.+...-+.+.+||..++... +++- +-.++..+.+.++-.
T Consensus 642 ttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~ 721 (1005)
T KOG2274|consen 642 TTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPET 721 (1005)
T ss_pred HHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCcc
Confidence 77777776543 335555666666554 4556778888999999888652 2322 347777777666422
Q ss_pred ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 000098 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D-~~~~VR~~A~~al~~l~ 1993 (2256)
+...-..+-.-+.+++...|. .+.+.+++++..+...+.. ....|-+.-...|..+.
T Consensus 722 sds~a~~VG~lV~tLit~a~~-el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 722 SDSAAAFVGPLVLTLITHASS-ELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred chhHHHHHhHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 111111222223345555554 3556667777766665543 33444444444454443
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-06 Score=109.81 Aligned_cols=394 Identities=16% Similarity=0.164 Sum_probs=237.8
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh-hhhhHHH
Q 000098 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVP 1502 (2256)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp 1502 (2256)
++.++.+.+.+.-+.+...++.++....+.. ...+.+.+..++.+++..+|..++..++.++......... .=.++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 6677777766666778888999988877766 4788899999999999999999999999998765432211 1147899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHH
Q 000098 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2256)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2256)
.++.++.|++..|...|..+|..+++.- +.++.+++ + ...+.+.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhC--------c--------------------------chHHHHH
Confidence 9999999999999999999999998632 22222211 0 0123344
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh--hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh-CcCch--HH
Q 000098 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENF--PD 1657 (2256)
Q Consensus 1583 ~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~--~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~-g~~~~--~~ 1657 (2256)
..+...+..+|..+..++.+++.. .+ +...+.. .+++.+...+.+.+.-+|..+...++.++..- |-+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S~-~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--SP-EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--CH-HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777777777777762 22 2222332 48888888899999999999999999999822 12233 24
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH------HHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhh
Q 000098 1658 LVSWLLDALKSDNSNVERSGAA------QGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2256)
Q Consensus 1658 lip~Ll~~L~~~~~~~~R~~aa------~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~ 1727 (2256)
+++.+.+.+.+..+.. |.++. .-.+.+... .+. .++.++..+.....+.++..+..|+.++|.++...
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV 321 (503)
T ss_pred HHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH
Confidence 7777777776532222 22221 223333332 222 33556667777778889999999999999998654
Q ss_pred Ch-hH-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000098 1728 GV-QF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2256)
Q Consensus 1728 g~-~f-----~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ 1801 (2256)
.. .+ .+-+..++..+.........++|..+++++..+.........+.+
T Consensus 322 ~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i------------------------- 376 (503)
T PF10508_consen 322 EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI------------------------- 376 (503)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH-------------------------
Confidence 22 21 112223333333333344444555555555554322111000000
Q ss_pred HHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHH
Q 000098 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2256)
Q Consensus 1802 ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~ 1881 (2256)
....+.+.+.++...... .++...+.+-.++|.++..+|..++.+ +|..+.
T Consensus 377 -------------------------~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~ 427 (503)
T PF10508_consen 377 -------------------------LSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQRE 427 (503)
T ss_pred -------------------------HHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHH
Confidence 011122333344333222 233344566678999999999998874 566555
Q ss_pred HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1882 IM--PVLMNTLISSLASSSSERRQVAGRALGELV 1913 (2256)
Q Consensus 1882 ~l--~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv 1913 (2256)
+. |.+++.+.+.-.+.+.+.+++=..++..++
T Consensus 428 i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 428 ICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 43 345555544333444444444444444444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00067 Score=86.74 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHH--------HHHHhhcCCC-
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYD- 1127 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~--------~~~w~~~~~~- 1127 (2256)
+.+...|..+++||+++|+.||++|+..... ++++ ..++.. ++....|...|-.| +.-|....-.
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y~--l~lL~L--v~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNYP--LLLLNL--VANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccC--CCch--HHHHHH--HhccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 5677889999999999999999999977522 2332 223333 23333355555443 3367543322
Q ss_pred --CC----CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Q 000098 1128 --FG----TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSL 1175 (2256)
Q Consensus 1128 --~~----~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~ 1175 (2256)
+. +.+ ..++...-+....+.....+++.-+++ ..|+.|+++++.|.+.
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ 134 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVAR 134 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhh
Confidence 22 122 233333336668899999999998885 4789999988888775
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-07 Score=109.17 Aligned_cols=182 Identities=26% Similarity=0.313 Sum_probs=132.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH-------HHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH
Q 000098 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL-------REGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2256)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L-------~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~ 1419 (2256)
..+.+|..|..|...|..++.+...... ...+++.+ ...+.+. ...+...|+.++..++..++..|+||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4566899999999999999987721111 11233333 3333333 3456677899999999999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhH-HHHHHHhccCCChhHHHHHHHHHHHHHhhCh---hhHhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~i-lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p---~~l~~ 1495 (2256)
.++|.++..++|....+|++|..++..++.+.+ ....+ ++.+..+..++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999999998876 11233 6777788899999999999999999998887 44433
Q ss_pred --hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1496 --CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1496 --~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
.++.+++.+..++.|++++||.+|-.++..+.+.+++
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999877654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=114.75 Aligned_cols=295 Identities=19% Similarity=0.206 Sum_probs=206.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
+++.+...+..-+..+.+-.|+..+..++....+ +.-+..++|-++.++.|+...||-.|..++..+.....+
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~----- 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD----- 495 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC-----
Confidence 4444555555444566677788877777777664 566888999999999999999999998887766432211
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~ 1537 (2256)
..|.+..-+-+-|+|.|-.++.| ....||.+-+.+|..+++..- .+..
T Consensus 496 -----------------------------~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 496 -----------------------------IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred -----------------------------CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 01111111223478888889999 677899999999999986531 1222
Q ss_pred HHHHHHh--hhCCCChhHH------HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000098 1538 LVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2256)
Q Consensus 1538 lv~~Ll~--~l~d~~~~vr------~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~ 1609 (2256)
+...+-. .+++|+..+. .-++.| +..+-..+..++.|..+-||+...+.+.-+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 2222222 2445543210 111121 112334556677888899999999999999987664
Q ss_pred CCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000098 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2256)
Q Consensus 1610 ~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~ 1688 (2256)
.+. -+.+++.|...|+|.+|.+|.+.+..|..++-.+|.. .-+.++|.|.+.|.+.++ .+-..+..++..+++.
T Consensus 612 ~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE-~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEE-AVIVSALGSLSILIKL 686 (1431)
T ss_pred ccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHh
Confidence 322 2358899999999999999999999998888778866 345688999999987544 4677788888888763
Q ss_pred --hcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh
Q 000098 1689 --LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1689 --~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~ 1729 (2256)
+.+.+..+++..+...+.+++.-+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 34446677888888889999999999999999988887764
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.7e-05 Score=94.30 Aligned_cols=400 Identities=18% Similarity=0.151 Sum_probs=229.0
Q ss_pred cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
+.+...+++........ ++..+++-.---|-..+....+..+ --+.++++.+.|+ |+-.|..|+.++..|
T Consensus 66 G~dvS~~Fp~VVKNVas-kn~EVKkLVyvYLlrYAEeqpdLAL---LSIntfQk~L~Dp-N~LiRasALRvlSsI----- 135 (968)
T KOG1060|consen 66 GKDVSLLFPAVVKNVAS-KNIEVKKLVYVYLLRYAEEQPDLAL---LSINTFQKALKDP-NQLIRASALRVLSSI----- 135 (968)
T ss_pred CCcHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhcCCCcee---eeHHHHHhhhcCC-cHHHHHHHHHHHHhc-----
Confidence 45577777777766654 4477777666666666665444333 2356677777777 788888776654433
Q ss_pred cCchHh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh
Q 000098 1412 RLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2256)
Q Consensus 1412 ~~~~py-v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p 1490 (2256)
--|. .+-++-.+-++..|..+.||..|+.|+-.+.+ +.++.-..++..+-..|.|.+.-+--+|+.++.. .||
T Consensus 136 --Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~e---vCP 209 (968)
T KOG1060|consen 136 --RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEE---VCP 209 (968)
T ss_pred --chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHH---hch
Confidence 1122 22233444567789999999999998888754 3333334566666666778777776667666554 445
Q ss_pred hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh-cCch-------------------------------hHHhH
Q 000098 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV-IKNP-------------------------------EIASL 1538 (2256)
Q Consensus 1491 ~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~-i~~~-------------------------------~i~~l 1538 (2256)
+.+.- +..=...++.++-|-+..=+.-.+..|-+.++. +..| .++-+
T Consensus 210 erldL-IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lL 288 (968)
T KOG1060|consen 210 ERLDL-IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLL 288 (968)
T ss_pred hHHHH-hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHH
Confidence 54321 112233455666666555555666666666543 1111 01111
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh
Q 000098 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~ 1618 (2256)
+...-.++...+..+--|... .|.+--.......+...+.+.|++.. ++|....+.|..|+. ..+.-+.||+.
T Consensus 289 L~stkpLl~S~n~sVVmA~aq----l~y~lAP~~~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~--~~~~lF~P~lK 361 (968)
T KOG1060|consen 289 LQSTKPLLQSRNPSVVMAVAQ----LFYHLAPKNQVTKIAKALVRLLRSNR-EVQYVVLQNIATISI--KRPTLFEPHLK 361 (968)
T ss_pred HHhccHHHhcCCcHHHHHHHh----HHHhhCCHHHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHh--cchhhhhhhhh
Confidence 111111111111111111100 01111111134455566666665432 555555555555554 23334444432
Q ss_pred ------------------------------hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc
Q 000098 1619 ------------------------------LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1619 ------------------------------~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~ 1668 (2256)
.+++.+.....+.+..+-..+.++||..+...+. .-+.++.+|+..+.+
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-v~~tCL~gLv~Llss 440 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-VTDTCLNGLVQLLSS 440 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-hhhHHHHHHHHHHhc
Confidence 3555666666677777888999999999988774 357899999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC
Q 000098 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2256)
Q Consensus 1669 ~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~-~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~ 1747 (2256)
.+.. +-..+...+-.++..-..++ .+++..+.+.+.. .-+..|.+.++++|..+..... ..++++-.+.+.+.
T Consensus 441 hde~-Vv~eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs 514 (968)
T KOG1060|consen 441 HDEL-VVAEAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFS 514 (968)
T ss_pred ccch-hHHHHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhc
Confidence 6443 44555555555555433332 2244444444433 2567788889999988766432 34567777778888
Q ss_pred CCCHHHHHHHHHHHH
Q 000098 1748 DENESVRDAALGAGH 1762 (2256)
Q Consensus 1748 d~~~~VR~~Al~al~ 1762 (2256)
++.+.|+-..+....
T Consensus 515 ~E~~evKlQILnL~a 529 (968)
T KOG1060|consen 515 DEGDEVKLQILNLSA 529 (968)
T ss_pred cccchhhHHHHHhhh
Confidence 999889877655433
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=109.10 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=139.0
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1775 ~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
.+.+.+.....+.+|..|..+++-+..++... .. ......+.+.+. .++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~~----------------~~~~~~~~~~l~-----~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--AP----------------EDFPPDFVECLR-----QLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHHHH--------HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--Cc----------------cccHHHHHHHHH-----HhHHHHHHHHh
Confidence 34555555567889999999999998886421 00 000011222221 33445555667
Q ss_pred CCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhch-HHHHhhhcC
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~l-lp~L~~~l~ 1933 (2256)
|....|...|+.+++.++...+..+.++++.+++.+++.+++++..+|..|..||..+++.++ +.+.+ .+.+..+..
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 776778889999999999999989999999999999999999999999999999999999776 23455 677778888
Q ss_pred CCChhhHHhHHHHHHHHHHhhC--hhhhHh--hHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh
Q 000098 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2256)
Q Consensus 1934 d~~~~vR~~a~~aL~eii~~~~--~~~l~~--~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~ 2000 (2256)
+.++.+|..++.++..++...+ ...+.. .++.+.+.+..++.|++++||++|..+|..+++.+|..+
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 9999999999999999998887 333332 357899999999999999999999999999998877643
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.5e-07 Score=100.79 Aligned_cols=353 Identities=16% Similarity=0.139 Sum_probs=207.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh---CcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~---g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
+..-++.|.+.|.+++ .....+|.+-...++..- +++.+..-.++|.+.+.+.+.......=+|.+++..++.+..
T Consensus 69 ~~~elp~lt~~l~SdD-ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 69 FYSELPQLTQQLFSDD-IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhhhhHHHHHHHhhhH-HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 3445677777776554 666666666666655422 122222335677777777433222233356677878877654
Q ss_pred cCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCCh--hHHHHHHHHHHH
Q 000098 1412 RLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW--RTKQSSVQLLGA 1484 (2256)
Q Consensus 1412 ~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w--~~R~~a~~~Lg~ 1484 (2256)
..-.-.+ ...+|.+++.+.+.+..||+.+.+|++.++...+.. .+ -..+.+++..+.+... ..-+.+...|..
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 3211111 246899999999999999999999999987654331 11 2345566655554433 444557788899
Q ss_pred HHhhC-hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhc
Q 000098 1485 MAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 1563 (2256)
Q Consensus 1485 la~~~-p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~ 1563 (2256)
++.+. |..-...+...+|.|.+++...+++|-..||||+.-+...- +..++.++..
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~---------------------- 284 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDV---------------------- 284 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhc----------------------
Confidence 98875 33233456788999999999999999999999999887542 1222211110
Q ss_pred ccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1564 TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1564 ~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
.+.+-+...|.+++..+..-+...+|++..- .+...-.-.--..++.+..++.++...+|..++..+
T Consensus 285 ------------g~~~RLvElLs~~sa~iqtPalR~vGNIVTG-~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 285 ------------GIPGRLVELLSHESAKIQTPALRSVGNIVTG-SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred ------------CCcHHHHHHhcCccccccCHHHHhhcCeeec-CccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 0112233333333333333334445555431 111000001123566777778899899999999999
Q ss_pred HHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc-H-h---HH--HHHHHHHHHhccCCCHHH
Q 000098 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-T-V---YF--EHILPDIIRNCSHQRASV 1712 (2256)
Q Consensus 1644 ~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g-~-~---~l--~~ll~~ll~~l~~~~~~v 1712 (2256)
+.+...-.++ .-..++|.|+..|.. .++..+..|+++++....+.- . + |+ ..++..+...+.-.+..+
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 8876432222 123578888888876 567789999999888765432 1 1 11 234444444443333334
Q ss_pred HHHHHHHHHHhHh
Q 000098 1713 RDGYLTLFKYLPR 1725 (2256)
Q Consensus 1713 R~~al~~l~~La~ 1725 (2256)
-+-++.++.++.+
T Consensus 431 iev~LD~~eniLk 443 (526)
T COG5064 431 IEVALDAIENILK 443 (526)
T ss_pred hhhhHHHHHHHHh
Confidence 4445666665544
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-07 Score=102.38 Aligned_cols=305 Identities=15% Similarity=0.135 Sum_probs=199.8
Q ss_pred hHHHHHHHhccCC-ChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--h
Q 000098 1458 LVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--P 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~-~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~ 1533 (2256)
.++|.+++.+++. .---...|..+|..++.+...+..... ...+|.++++|.+++..||..+.|||++++..-.. .
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 4578888888543 333456788899999988776643322 26789999999999999999999999999854221 1
Q ss_pred hH--HhHHHHHHhhhCCCCh---hHHHHHHHHHhc--ccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000098 1534 EI--ASLVPTLLMGLTDPND---HTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2256)
Q Consensus 1534 ~i--~~lv~~Ll~~l~d~~~---~vr~al~~L~~~--~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~ 1606 (2256)
++ -..+..++..+..... .+|.+-.+|.+. .--+.-+...+...+|++.+++...++++-..||-++..+...
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 11 1222333333332222 335544444331 1112233446778899999999999999999999999988762
Q ss_pred cCCCCcchhhhh-hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 000098 1607 VTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2256)
Q Consensus 1607 l~~~~~l~~~l~-~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~ 1681 (2256)
..+.+...++ .+++.|.+++.+++..++..+.+.+|.++..-... .--..++.+...|.+. ....|..+++.
T Consensus 274 --~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWT 350 (526)
T COG5064 274 --PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWT 350 (526)
T ss_pred --cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhhee
Confidence 2233333333 45678999999999999999999999998643322 1123556665556654 44689999999
Q ss_pred HHHHHHHhcHh---HH-HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhh--ChhHHHHH--HHHHHHHHHhcCCCCHHH
Q 000098 1682 LSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL--GVQFQNYL--QQVLPAILDGLADENESV 1753 (2256)
Q Consensus 1682 L~~i~~~~g~~---~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~--g~~f~~yl--~~ilp~Ll~~L~d~~~~V 1753 (2256)
++.+-.+.... .+ ..++|.++..+...+...|..+|+++....... .++...|+ +.++.++.+.|.-.+..+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 99887655443 11 457888999998889999999999888654322 12333444 245566666665444344
Q ss_pred HHHHHHHHHHHH
Q 000098 1754 RDAALGAGHVLV 1765 (2256)
Q Consensus 1754 R~~Al~al~~iv 1765 (2256)
-+.++.+++.+.
T Consensus 431 iev~LD~~eniL 442 (526)
T COG5064 431 IEVALDAIENIL 442 (526)
T ss_pred hhhhHHHHHHHH
Confidence 455566665554
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-05 Score=101.83 Aligned_cols=396 Identities=16% Similarity=0.149 Sum_probs=236.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HH
Q 000098 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQ 1420 (2256)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~ 1420 (2256)
++..|..++ ...=..++..|..+.....+... ...+.+.+...+.+. ++.+|+.++..++.+....+....... ..
T Consensus 43 lf~~L~~~~-~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSN-REQVELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcC-hHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 555555443 23334556667777776655443 236778888888876 789999988887777654332111111 35
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhH-----HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-----LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~i-----lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
+++.++.+++|++..|.+.|..++..++++-. +.+.+ ++.+...+...+-.+|.-.++++..++...++.+..
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88999999999999999999999999987533 23333 566666666556667777888899998887776544
Q ss_pred hh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-hhH--HhHHHHHHhhhCCCChhH--H-----HHHHHHHhcc
Q 000098 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI--ASLVPTLLMGLTDPNDHT--K-----YSLDILLQTT 1564 (2256)
Q Consensus 1496 ~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i--~~lv~~Ll~~l~d~~~~v--r-----~al~~L~~~~ 1564 (2256)
.. .++++.++..+.+.+.-||..+++.+..++..-.. .++ ..+++.|.+.+.+..... + ..+...+...
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 33 25899999999999999999999999999983221 233 456666666665442221 1 1112222111
Q ss_pred cccC-CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc----hhhhhhhhHHHHHhhcCCCHHHHHHH
Q 000098 1565 FVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM----IPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2256)
Q Consensus 1565 ~~~~-~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l----~~~l~~Ll~~L~~~L~d~~~~VR~~a 1639 (2256)
.... .-....+.++..+.+.+.+.++..+..|..++|.++........+ .+-++.++..+.........++|..+
T Consensus 278 ~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~ 357 (503)
T PF10508_consen 278 RVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRA 357 (503)
T ss_pred hcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHH
Confidence 1110 001122344445556667788899999999999998743221111 12234455566666667778889888
Q ss_pred HHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 000098 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTL 1719 (2256)
Q Consensus 1640 ~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~ 1719 (2256)
..|++.+.....+..-+++.. +.+ ..-..++...... .++..++.|-+.+|.+++..
T Consensus 358 l~al~~il~~~~~~~~~~i~~-~~~-------------------~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~ 414 (503)
T PF10508_consen 358 LHALASILTSGTDRQDNDILS-ITE-------------------SWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRL 414 (503)
T ss_pred HHHHHHHHhcCCCCchHHHHH-HHH-------------------HHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHH
Confidence 888888875333222222221 000 0111111111111 45666777889999999988
Q ss_pred HHHhHhhh-ChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000098 1720 FKYLPRSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1720 l~~La~~~-g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv 1765 (2256)
+..++... |...---.+.++..+++.-.+.+...++.=...+..++
T Consensus 415 l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 415 LQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 88777542 21111112344555555545555555544333344443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.0044 Score=78.57 Aligned_cols=276 Identities=18% Similarity=0.269 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHhhhhH---hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh--------H--hhhhhhHH
Q 000098 1435 AVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--------L--SQCLPKIV 1501 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~---~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~--------l--~~~L~~Iv 1501 (2256)
.+|..--.-.+.+...-++ ..+..-+...+..-.+.+|..-..|+..+-.++++.+.. + +..+..++
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 4565543333333332222 223344444455556789999999999999999886532 1 12333455
Q ss_pred HHHHH--hhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHH
Q 000098 1502 PKLTE--VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1502 p~L~~--~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
+.++. ++.++|+.|+-.-.+.+-+..+.+... ..-+|.++.+.-|+
T Consensus 494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~------------------------------ 541 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDS------------------------------ 541 (980)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccc------------------------------
Confidence 54443 456778877766555555544333210 11223333222221
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHH------------HHHHHHHHHHHHH
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE------------VRSVAARAIGSLI 1647 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~------------VR~~a~~aL~~L~ 1647 (2256)
+++++.+..||..+......+.+.+. +.+.||.+.++..+...+..+.+. -+....+++|-+.
T Consensus 542 ---rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI 616 (980)
T KOG2021|consen 542 ---RGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVII 616 (980)
T ss_pred ---hhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEE
Confidence 45556666777777766666666542 345667777777666666322211 1112222333222
Q ss_pred Hhh--CcC----ch---------HHHHHHHHHHhhcCCCH----HHHHHHHHHHHHHHHHhcHh-----------HHHHH
Q 000098 1648 RGM--GEE----NF---------PDLVSWLLDALKSDNSN----VERSGAAQGLSEVLAALGTV-----------YFEHI 1697 (2256)
Q Consensus 1648 ~~~--g~~----~~---------~~lip~Ll~~L~~~~~~----~~R~~aa~~L~~i~~~~g~~-----------~l~~l 1697 (2256)
..- ..+ |. +..+..+...+.++.+. .....++.+++.+.+++... .+...
T Consensus 617 ~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ 696 (980)
T KOG2021|consen 617 TLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNI 696 (980)
T ss_pred eCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHH
Confidence 100 000 11 11222222223333222 13355677777777665321 35555
Q ss_pred HHHHHHhccC--CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC
Q 000098 1698 LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2256)
Q Consensus 1698 l~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~ 1747 (2256)
++.++..+.- ....+|.+.-..++++-.++|++.-||+++.+..+++...
T Consensus 697 ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 697 LDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 5555444432 3567888888889999999999999999999998887654
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0011 Score=83.55 Aligned_cols=237 Identities=14% Similarity=0.179 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
..++-+-++..++...+.||..|.-.+-.++-.++ +.+..-+|.+.+.|+|++..+.-+|+..+..+|...|+..-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 34677888889999999999999988888887776 45788899999999999999999999999999998887532
Q ss_pred hhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhcC-chhH-HhHHHHHHhhhCCCChh--HHHHHHHHHhcccccC--CC
Q 000098 1498 PKIVPKLTEVLTDTH-PKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNT--VD 1570 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~-~~VR~aA~~aL~~l~~~i~-~~~i-~~lv~~Ll~~l~d~~~~--vr~al~~L~~~~~~~~--~~ 1570 (2256)
.+-|.+++++.++. ..|- +..|.-|+...+ +|-+ +.++|.+.+.+...... +-+|+.+++....... ..
T Consensus 218 -~LAP~ffkllttSsNNWmL---IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVL---IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred -cccHHHHHHHhccCCCeeh---HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 45677777776432 2222 223333333221 2444 67777777776543221 1256666655322222 34
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 000098 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2256)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~ 1650 (2256)
..+....+.-+..++.|.+++.|.-++.+++.++. +.++.+..|. ..+..+|.|.++.+|..|...+-.++.
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-- 365 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-- 365 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh--
Confidence 45666777778888899999999999999998887 3444444443 456678899999999888877777664
Q ss_pred CcCchHHHHHHHHHHhhcCCC
Q 000098 1651 GEENFPDLVSWLLDALKSDNS 1671 (2256)
Q Consensus 1651 g~~~~~~lip~Ll~~L~~~~~ 1671 (2256)
++.+.+++..||..+...+.
T Consensus 366 -kkNl~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 366 -KKNLMEIVKTLMKHVEKAEG 385 (877)
T ss_pred -hhhHHHHHHHHHHHHHhccc
Confidence 45677888888887665433
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00033 Score=88.83 Aligned_cols=379 Identities=14% Similarity=0.126 Sum_probs=227.1
Q ss_pred CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH-HHHHHHHHHc
Q 000098 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAF 1429 (2256)
Q Consensus 1351 ~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~-~llp~ll~~l 1429 (2256)
+...+.+--.-++.++++.. . ....|.+.+++..+ |.+++.-...-+-.-++.-.+ +. --+..+-..+
T Consensus 49 d~~KleAmKRIia~iA~G~d---v--S~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpd-----LALLSIntfQk~L 117 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAKGKD---V--SLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPD-----LALLSINTFQKAL 117 (968)
T ss_pred cHHHHHHHHHHHHHHhcCCc---H--HHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCC-----ceeeeHHHHHhhh
Confidence 33333333344455555432 1 14667777777665 777776543322222222111 10 0134556789
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh
Q 000098 1430 SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2256)
Q Consensus 1430 ~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L 1508 (2256)
+|+++-+|-.|..++..|- -..+ +.++-.+-+...|.+..+|+.|..++..+....|++- ++++..+-.+|
T Consensus 118 ~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k----~qL~e~I~~LL 189 (968)
T KOG1060|consen 118 KDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK----DQLEEVIKKLL 189 (968)
T ss_pred cCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH----HHHHHHHHHHh
Confidence 9999999988877765541 1112 3334455567789999999999999999888777763 26666677789
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHh---cccc------------------
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQ---TTFV------------------ 1566 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~---~~~~------------------ 1566 (2256)
.|..|.|-.+|..|+..+|..-- ..+..-...+++.+.|-++.-+ -.+..|.. +.+.
T Consensus 190 aD~splVvgsAv~AF~evCPerl-dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 190 ADRSPLVVGSAVMAFEEVCPERL-DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNL 268 (968)
T ss_pred cCCCCcchhHHHHHHHHhchhHH-HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccc
Confidence 99999999999999888763200 1123333444555544432111 11222211 1111
Q ss_pred ---------cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHH
Q 000098 1567 ---------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2256)
Q Consensus 1567 ---------~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~ 1637 (2256)
++...+.+..++.....++.++++.|-.+++++.-.++-- .+ ...+...|..+|. .++.+|.
T Consensus 269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~----~~----~~~i~kaLvrLLr-s~~~vqy 339 (968)
T KOG1060|consen 269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK----NQ----VTKIAKALVRLLR-SNREVQY 339 (968)
T ss_pred cccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH----HH----HHHHHHHHHHHHh-cCCcchh
Confidence 1122345566666667778888988888888777666531 11 2345566666555 4678899
Q ss_pred HHHHHHHHHHHhhCcCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHH
Q 000098 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2256)
Q Consensus 1638 ~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~-~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~a 1716 (2256)
....++..++..-.. -+.|++....- +.+...+..--.+-|+.++. ......+++.+.....+.+..+-..+
T Consensus 340 vvL~nIa~~s~~~~~----lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~---esni~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 340 VVLQNIATISIKRPT----LFEPHLKSFFVRSSDPTQVKILKLEILSNLAN---ESNISEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred hhHHHHHHHHhcchh----hhhhhhhceEeecCCHHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHHhcCchhHHHHH
Confidence 999999988864322 12233322221 21222233223333444443 23456677777777778777788888
Q ss_pred HHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Q 000098 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1717 l~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~ 1769 (2256)
+.++|..+...+. .-+..+..++..+...++.|-..+.-.++.+++.-.
T Consensus 413 V~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 413 VKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 9999998888776 445677788888888788777777777777766433
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0089 Score=78.02 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=119.3
Q ss_pred ccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch----hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchh
Q 000098 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 2145 (2256)
Q Consensus 2070 ~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~ 2145 (2256)
+++..|.|.+.+.+...+...|..-..++..++.+++. +.++.++|.|++++.=+|..+|..+..++..+....+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 57889999999999877778899999999999998754 56889999999999999999999999999999888887
Q ss_pred hhhhhHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHhhhhhh
Q 000098 2146 YLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206 (2256)
Q Consensus 2146 ~~~~y~~~il~~L~~~l~D~d---~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~~~~d~ 2206 (2256)
-...|+..+++.++.+=.|.| ..||..|..||+.+...+|...+-.+.|.+.+++...-|+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD 1006 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc
Confidence 788899999999998877776 6899999999999999999887777878777776655544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=114.29 Aligned_cols=277 Identities=16% Similarity=0.211 Sum_probs=196.4
Q ss_pred cchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhc
Q 000098 1253 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332 (2256)
Q Consensus 1253 ~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~ 1332 (2256)
-.+++++..++..... . ..|-+|+++|..++.+++.+ -++..++|-++..+.|+...||..+...|..++....
T Consensus 421 ~l~vs~lts~IR~lk~---~--~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 421 VLFVSVLTSCIRALKT---I--QTKLAALELLQELSTYIDDE-VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred eeeHHHHHHHHHhhhc---c--hhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 3456667666654211 1 35678999999999887654 4688899999999999999999888887766665442
Q ss_pred C-------chHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 000098 1333 D-------EAPTLVSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAF 1403 (2256)
Q Consensus 1333 ~-------~~~~~l~~Ll~~L~~~-~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~-l~~~~~~~~Re~al~al 1403 (2256)
+ -+++|+-..+..|..+ ....+|..-|.+|+.+++..- ........+.++ +.+..+.+
T Consensus 495 ~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse--------- 561 (1431)
T KOG1240|consen 495 DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE--------- 561 (1431)
T ss_pred CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc---------
Confidence 2 2577777777777776 556789999999999887531 111222222222 11211111
Q ss_pred HHHHHHhc-cCchHh----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHH
Q 000098 1404 ECLCEKLG-RLFEPY----VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQS 1477 (2256)
Q Consensus 1404 ~~L~~~l~-~~~~py----v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~ 1477 (2256)
+.+ ..++.+ +..+-..+...+.|+.+.||.+-.+.+..++..++...- +.+|+.++.+|.|++|+-|.+
T Consensus 562 -----t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~a 636 (1431)
T KOG1240|consen 562 -----TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGA 636 (1431)
T ss_pred -----cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHH
Confidence 000 112222 222334555678899999999999999999988887654 678999999999999999998
Q ss_pred HHHHHHHHHhhChhh-HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--cCchhHHhHHHHHHhhhCCCChhHH
Q 000098 1478 SVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1478 a~~~Lg~la~~~p~~-l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--i~~~~i~~lv~~Ll~~l~d~~~~vr 1554 (2256)
=.+-+..++...+.+ .+ .-++|.+.+.|.|.++-|-..|..++..+++. ++.+.+.+++......+..|+..+|
T Consensus 637 FfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR 713 (1431)
T KOG1240|consen 637 FFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIR 713 (1431)
T ss_pred HHhhccceEEEEeeeeHH---HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHH
Confidence 777776666655544 33 25789999999999999999999999999874 5566777778888888888988887
Q ss_pred HH
Q 000098 1555 YS 1556 (2256)
Q Consensus 1555 ~a 1556 (2256)
.+
T Consensus 714 ~~ 715 (1431)
T KOG1240|consen 714 RA 715 (1431)
T ss_pred HH
Confidence 54
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0089 Score=76.56 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=75.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHH--------HHHHhhcCC-CCC
Q 000098 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGY-DFG 1129 (2256)
Q Consensus 1059 ~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~--------~~~w~~~~~-~~~ 1129 (2256)
+.+.|++..|||..|++-||++|++-... |.....+-.++ ..+++|-.+|=+| ...|+.+.. .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq-----PGF~~~L~sI~-l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ-----PGFFSKLYSIF-LSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC-----CcHHHHHHHHH-hccccceeeeeehhhhHhcchhHHhhcCCcccCC
Confidence 45789999999999999999999854321 33334445554 5566666655553 448876432 333
Q ss_pred C----Ch-HhHHHhhcCCCHHHHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHH
Q 000098 1130 T----DY-SGLFKALSHSNYNVRLAAAEALATALD-----EYPDSIQGSLSTLFSL 1175 (2256)
Q Consensus 1130 ~----~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-----~~~~~~~~~l~~L~~~ 1175 (2256)
+ .+ ..++.....++..+-...|.+++.+++ +||+.++++++.|.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~ 131 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSS 131 (978)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHh
Confidence 2 23 667777778899999999999999986 3555555555555544
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00062 Score=87.11 Aligned_cols=303 Identities=16% Similarity=0.196 Sum_probs=200.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2256)
+...+-+-++.++..|.-.|..+++.++ +++....+.|.+.+.+...+..+|+-|+.|.-.+....|+..+ .+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----Hh
Confidence 4455555677777888777777777664 5666788999999999999999999999999999988888764 45
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc-----cccCCChhh
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT-----FVNTVDAPS 1573 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~-----~~~~~~~~~ 1573 (2256)
++...+.|.|.|+-|-.++..-+..+++.-.+ .+++.+++.|...+.+- .... -++.+..|.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l-----------~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQL-----------TNSGYSPEYDVHGISDPF 249 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCCccCccCCCchH
Confidence 66677889999999988888888888875322 24566777666655321 1101 133455666
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
++.-+-.+.+.+...+++....-..+++.++......+.... ..+-.++...+. +++...|..|+.+||.+...-..
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~Gn--AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGN--AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchh--HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcc
Confidence 666565667777766666666666777777764221122111 123344444443 57788999999999988753221
Q ss_pred CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH
Q 000098 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1653 ~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~ 1732 (2256)
..----+..|+..++.+++...|.. ..++..++|++..+|.-++.+.-.+...
T Consensus 328 NirYvaLn~L~r~V~~d~~avqrHr---------------------~tIleCL~DpD~SIkrralELs~~lvn~------ 380 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQRHR---------------------STILECLKDPDVSIKRRALELSYALVNE------ 380 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHHHH---------------------HHHHHHhcCCcHHHHHHHHHHHHHHhcc------
Confidence 1111235566666666665544433 3577888999999999998877666543
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
..+..++..++..|...+++.+.....-+..+++.|++
T Consensus 381 ~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 381 SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 24445666666777666778887776667777777765
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-05 Score=96.60 Aligned_cols=280 Identities=21% Similarity=0.222 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCC
Q 000098 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPS 1313 (2256)
Q Consensus 1234 ~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~ 1313 (2256)
..++.+..-+-..||.+ ....+...|.+ . .++.+|.+++.-+|-.+ +...+ .++.+.+-+.|...+
T Consensus 397 GGalyAlGLIhA~hG~~----~~~yL~~~Lk~-~----~~e~v~hG~cLGlGLa~--mGSa~---~eiYe~lKevLy~D~ 462 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRG----ITDYLLQQLKT-A----ENEVVRHGACLGLGLAG--MGSAN---EEIYEKLKEVLYNDS 462 (929)
T ss_pred cchhhhhhccccCcCcc----HHHHHHHHHHh-c----cchhhhhhhhhhccchh--ccccc---HHHHHHHHHHHhccc
Confidence 44555544444445554 44455555554 2 23478999887777544 33323 456677777665544
Q ss_pred HHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCH
Q 000098 1314 EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393 (2256)
Q Consensus 1314 ~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~ 1393 (2256)
.-.-+++.-.++-++ .+....+.+..|+.--.+.+...+.|+-+.+++.++-+... +.=+.+.+++.++ |+
T Consensus 463 AvsGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe------~Ad~lI~el~~dk-dp 533 (929)
T KOG2062|consen 463 AVSGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE------DADPLIKELLRDK-DP 533 (929)
T ss_pred hhhhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh------hhHHHHHHHhcCC-ch
Confidence 333333333333222 24445667777776655555566778888888877655422 3344566666666 89
Q ss_pred HHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-CCCh
Q 000098 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAW 1472 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-~~~w 1472 (2256)
-.|.++++++..--.+-|. ..-+..+++. ..+|.+++||.+|..+++-+.-.- +..+|..++.|. +-+.
T Consensus 534 ilR~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 534 ILRYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNP 603 (929)
T ss_pred hhhhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcCh
Confidence 9999888765443333332 2233444443 478999999999999998775332 345677777776 5689
Q ss_pred hHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhhhCCC
Q 000098 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~---~~~i~~lv~~Ll~~l~d~ 1549 (2256)
.+|.++..+||-.+.+.+.. .-+..|-.+..|+..-||+.|+-++.-+.-... +|.+..+...+.+.+.|.
T Consensus 604 HVRyGaA~ALGIaCAGtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhhhhHHHHHhhhhcCCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 99999999999777654433 334445567789999999999999887764433 245566666777777766
Q ss_pred Chh
Q 000098 1550 NDH 1552 (2256)
Q Consensus 1550 ~~~ 1552 (2256)
.+.
T Consensus 678 hEd 680 (929)
T KOG2062|consen 678 HED 680 (929)
T ss_pred hhH
Confidence 553
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=91.97 Aligned_cols=339 Identities=16% Similarity=0.118 Sum_probs=215.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHh-hh
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QC 1496 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~-~~ 1496 (2256)
...++..+...++.+..++..+++.++-+....++ -.+-+.+.+++.+. -.++..++.++-.++........ ..
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhh
Confidence 34445566777788888888888877665554432 12223445555543 33444556677666655322211 12
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhhhCCCChhHHH-HHHHHHhc--c-cccCC
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDHTKY-SLDILLQT--T-FVNTV 1569 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~d~~~~vr~-al~~L~~~--~-~~~~~ 1569 (2256)
. .-+..+..+-+..+..||+.+..+|.++.....+. .+ ..-+|.|...+...+..++. |..++..+ + -....
T Consensus 166 s-GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 S-GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred c-cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 2 23334556667788999999999999998765443 22 45678888888766665552 33333221 0 00111
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
...+-+.++|.+...+.+.++.++-.|..++++++.- ......-.-..-+|.+..+++++.-..-.+...|+..++-.
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 1223456899999999999999999999999999862 21111112234578888999988777767777788777655
Q ss_pred hCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH-HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 000098 1650 MGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2256)
Q Consensus 1650 ~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~ 1722 (2256)
-+.+ .-..++..|...|.-.++.+.+..+...+-.+....... .+ ...+|.++..+.|..-.+++..-.|+..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 4433 113466667777776555556777777666665433222 11 4578889999889888888877777776
Q ss_pred hHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1723 LPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1723 La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
++-. +.+..++ ..++|.++....+++.+||..+..|+..+..
T Consensus 403 Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 403 LALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 6643 3333333 2578888888899999999998888776643
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-05 Score=90.57 Aligned_cols=339 Identities=19% Similarity=0.163 Sum_probs=207.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCcccch--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHH
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 1423 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~--~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp 1423 (2256)
+..+.+..+...+..+++.++-..+...+. -..+-+.+.+++.+. ..++-.++.++..++..-.....---...+.
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~--vevqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG--VEVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC--cEEEeeehhhhhhhhccccchhhhhhccchh
Confidence 334556788889999999888766543321 124445667777664 2334344455555554321111100111233
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh--H-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC--hhhHhhhhh
Q 000098 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLP 1498 (2256)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~--v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~--p~~l~~~L~ 1498 (2256)
.+...-+..+..||..+..++-.+........ + ..-+|.+++.+.+.+..+++.++.+++.++-.. .+.+...=|
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 33345556677888877777766543322211 1 345899999999999999999999999988653 345666667
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhhhCCCChh-HHHHHHHHHhcccccCCChh--
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDH-TKYSLDILLQTTFVNTVDAP-- 1572 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~d~~~~-vr~al~~L~~~~~~~~~~~~-- 1572 (2256)
.++|.++.++.|++++|+-.|..+|+.++..-.-. ++ ..-+|.+.+.+++|.-. +-+.+..+.+. .+|...+.
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni-sihplNe~lI 329 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI-SIHPLNEVLI 329 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc-ccccCcccce
Confidence 89999999999999999999999999998642210 11 34568888888888532 22222222111 11111110
Q ss_pred hHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1573 SLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d-~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g 1651 (2256)
.-+.++.-+.+.++- .+.+.+-.|...+.+++... ....-.-.-..-+|.+..++.|....+|.....|+..++-.-.
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 011233335555553 45678888889998888621 2111111234578899999999999999999999998875322
Q ss_pred cC-ch--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1652 EE-NF--PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2256)
Q Consensus 1652 ~~-~~--~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2256)
.. ++ ..++|.|+....+ .+.++|-.++.+++.+....
T Consensus 409 ~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred cHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhh
Confidence 11 11 1244555444444 55668888888888876543
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.012 Score=74.74 Aligned_cols=362 Identities=15% Similarity=0.120 Sum_probs=212.7
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHH
Q 000098 1333 DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFEC 1405 (2256)
Q Consensus 1333 ~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~-------~~~~~~~Re~al~al~~ 1405 (2256)
.+..+++.+-++...+...+. .+|+.++-.+....+...+. ++++++...+. +.+++...+||+..+..
T Consensus 367 nDp~eyirry~df~d~g~spd--laal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~las 442 (970)
T COG5656 367 NDPDEYIRRYYDFFDNGLSPD--LAALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLAS 442 (970)
T ss_pred cCHHHHHHHhcchhcCCCChh--HHHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHH
Confidence 445677777776554443332 34555555555555544443 78888877662 23578888999999999
Q ss_pred HHHHhc--cCchHhHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHH
Q 000098 1406 LCEKLG--RLFEPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2256)
Q Consensus 1406 L~~~l~--~~~~pyv~~-llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~ 1481 (2256)
+..... ..++..+.. ++++++..+.++.-..|..+++.+..+...++..++ -.........+.+.+.-++..|..+
T Consensus 443 i~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalA 522 (970)
T COG5656 443 IKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALA 522 (970)
T ss_pred HHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 888433 233333443 578888899999999999888888888555555444 4566666777888888888888888
Q ss_pred HHHHHhhC--hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-HHHHhhcCc--hhH-HhHHH----HHHhhhCCCCh
Q 000098 1482 LGAMAYCA--PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVP----TLLMGLTDPND 1551 (2256)
Q Consensus 1482 Lg~la~~~--p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~i-~~lv~----~Ll~~l~d~~~ 1551 (2256)
+.-+.... .+.++.+.|..+..++.+-++-+.++-..+.+++ +.+.+.+.+ +++ ..++. .....+.++++
T Consensus 523 lq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d 602 (970)
T COG5656 523 LQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSD 602 (970)
T ss_pred HHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 88777653 3446778888888888887776666655544443 444444431 122 33333 33334444421
Q ss_pred ---hHH----HHHHHHHhc-----cc--ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1552 ---HTK----YSLDILLQT-----TF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1552 ---~vr----~al~~L~~~-----~~--~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
.+. .|...|..+ ++ ...+.......+.|.+.=.+.+.-.+.-+.|+.++....-.. +++.|..
T Consensus 603 ~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pim 679 (970)
T COG5656 603 TSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIM 679 (970)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhh
Confidence 111 122222210 11 111111122334555555556655677777888876654322 3455666
Q ss_pred hhhhHHHHHhhcCCCH-HHHHHHHHHHHHHHHhhCcC------chHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHh
Q 000098 1618 GLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAAL 1689 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~-~VR~~a~~aL~~L~~~~g~~------~~~~lip~Ll~~L~~~~~-~~~R~~aa~~L~~i~~~~ 1689 (2256)
..+...+.+++.++.. .--+.++-++..+...-+.+ |...+.......+.++.+ -.++.++++-+-.++-.+
T Consensus 680 wgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~ 759 (970)
T COG5656 680 WGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNI 759 (970)
T ss_pred hHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHc
Confidence 6666777777776653 44556677777777644333 333445555555555433 235666666666666666
Q ss_pred cHhHHHHHHHHH
Q 000098 1690 GTVYFEHILPDI 1701 (2256)
Q Consensus 1690 g~~~l~~ll~~l 1701 (2256)
+.+.+++.+|.+
T Consensus 760 rd~Ll~qy~plf 771 (970)
T COG5656 760 RDELLSQYLPLF 771 (970)
T ss_pred cchhHHhhhHHH
Confidence 665555555533
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0046 Score=79.58 Aligned_cols=316 Identities=17% Similarity=0.204 Sum_probs=188.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhccCchHhHHHHH
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR---NSAKRREGALLAFECLCEKLGRLFEPYVIQML 1422 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~---~~~~~Re~al~al~~L~~~l~~~~~pyv~~ll 1422 (2256)
|..+++...+|-...+...++..- .+++-.+...++++ .+.-+.- +|+..++..++ ......+.
T Consensus 78 Lias~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVg---lAL~alg~i~s---~Emardla 144 (866)
T KOG1062|consen 78 LIASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVG---LALCALGNICS---PEMARDLA 144 (866)
T ss_pred HhcCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehH---HHHHHhhccCC---HHHhHHhh
Confidence 445555555554444444444321 24444555444332 1222333 33334433333 23456788
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHH
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp 1502 (2256)
|.+...++..++.||+.|..|+.++....+ +.++.+++...+.|.+++.-+-.+++..+-.|++..|+.+. ++..++|
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~ 222 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVP 222 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHH
Confidence 888888899999999999999988887655 45688888888999998888888888899999988776543 3344555
Q ss_pred HHHHhhcC---------------CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHH-hhhC--CCChhHH-----HHHHH
Q 000098 1503 KLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLL-MGLT--DPNDHTK-----YSLDI 1559 (2256)
Q Consensus 1503 ~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll-~~l~--d~~~~vr-----~al~~ 1559 (2256)
.++..|++ ++|-.+-...+.|+-+++. ++...+.+..++ +... |.+..+- +|+.+
T Consensus 223 ~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 223 SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 44443321 2456666666666666653 223322222222 2221 1111111 23333
Q ss_pred HHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHH
Q 000098 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2256)
Q Consensus 1560 L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a 1639 (2256)
+..+ ....+-.-.-+.++-+++..++-++|..+...+..... .++..+..|- ..+..+++|++..+|..|
T Consensus 301 I~~I----~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~--~d~~avqrHr----~tIleCL~DpD~SIkrra 370 (866)
T KOG1062|consen 301 IMDI----RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ--QDPTAVQRHR----STILECLKDPDVSIKRRA 370 (866)
T ss_pred HHhc----cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc--CCcHHHHHHH----HHHHHHhcCCcHHHHHHH
Confidence 2211 11111222334555666666666666666665555544 2443333333 366778899999999998
Q ss_pred HHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1640 ~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
++..-.++. +.....++..|+..|.+. +...+...+..+.++++.+.++
T Consensus 371 lELs~~lvn---~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 371 LELSYALVN---ESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHhc---cccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 888777765 345677888888888875 5557888888888888888765
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.043 Score=75.39 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHh--ccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCC
Q 000098 1394 KRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDK 1470 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l--~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~ 1470 (2256)
..++.+.+.+..++... ...|.+|+. .++..++.+...+|..|..|+..++..-+.--. +.+...+...+.|.
T Consensus 792 ~d~~~a~li~~~la~~r~f~~sfD~yLk----~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYLAHARSFSQSFDPYLK----LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS 867 (1692)
T ss_pred ccchhHHHHHHHHHhhhHHHHhhHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc
Confidence 34555666666665543 344555554 556677889999999999999988764432211 45666667778899
Q ss_pred ChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-hhHHhHHHHHHhhhCCC
Q 000098 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1471 ~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i~~lv~~Ll~~l~d~ 1549 (2256)
+-.+|.+|++++|...-+.|+...+++. .+.+...|+...||+.+.+.+..++...++ +.+..+.-.++....|.
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDE 943 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccc
Confidence 9999999999999998888876655544 455678899999999999999999986543 23345555666667776
Q ss_pred ChhHH
Q 000098 1550 NDHTK 1554 (2256)
Q Consensus 1550 ~~~vr 1554 (2256)
...+.
T Consensus 944 Eg~I~ 948 (1692)
T KOG1020|consen 944 EGNIK 948 (1692)
T ss_pred hhHHH
Confidence 65454
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-06 Score=84.32 Aligned_cols=93 Identities=27% Similarity=0.369 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhH
Q 000098 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2256)
Q Consensus 1395 ~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2256)
.|.+++.++..++.+++....+|+..++|.++.++.|++..||..|.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEa------------------------------- 50 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEA------------------------------- 50 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH-------------------------------
Confidence 5788999999999988877888888888888888777766666655544
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2256)
|..++......+-.++++|++.+..++.|+++.||.+| +.|.++
T Consensus 51 -------L~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 51 -------LYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 44455555555566889999999999999999999887 444444
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00093 Score=84.22 Aligned_cols=247 Identities=16% Similarity=0.192 Sum_probs=141.1
Q ss_pred cHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Q 000098 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1690 g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~ 1769 (2256)
..+.-+.+-+.++..+++..+.+|.-++-++-.+..-.++.+.| .+|-+..-|.|+++.|..+|...++.+...-.
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~----~FprL~EkLeDpDp~V~SAAV~VICELArKnP 213 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP----CFPRLVEKLEDPDPSVVSAAVSVICELARKNP 213 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence 34455778889999999999999998887777666555554433 45778888999999999999888888765433
Q ss_pred ccchhchHHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHH
Q 000098 1770 TTSLPLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2256)
Q Consensus 1770 ~~~~~~llp~L~~~l~d--~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~ 1847 (2256)
. .+-.+-|.+-+.|.+ .||-+ ...+.++|.+. . +-..|| ..++.
T Consensus 214 k-nyL~LAP~ffkllttSsNNWmL-IKiiKLF~aLt----p------------------------lEPRLg----KKLie 259 (877)
T KOG1059|consen 214 Q-NYLQLAPLFYKLLVTSSNNWVL-IKLLKLFAALT----P------------------------LEPRLG----KKLIE 259 (877)
T ss_pred c-ccccccHHHHHHHhccCCCeeh-HHHHHHHhhcc----c------------------------cCchhh----hhhhh
Confidence 2 233366777666643 56743 12233344331 0 000111 11222
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHH
Q 000098 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2256)
Q Consensus 1848 ~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~ 1927 (2256)
.|...... ..|++.+ -+++.+++.. .+.+..++.-..+ .-.+..
T Consensus 260 plt~li~s------T~AmSLl-----------YECvNTVVa~---s~s~g~~d~~asi----------------qLCvqK 303 (877)
T KOG1059|consen 260 PITELMES------TVAMSLL-----------YECVNTVVAV---SMSSGMSDHSASI----------------QLCVQK 303 (877)
T ss_pred HHHHHHHh------hHHHHHH-----------HHHHHHheee---hhccCCCCcHHHH----------------HHHHHH
Confidence 22221111 1111211 1112222111 0000000000111 111223
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q 000098 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2256)
Q Consensus 1928 L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2256)
|..++.|.+++.|.-.|.+++.+..... ..+ ..--..+.++|.|.|+.+|-.|... ++..+....+.+++..
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI~ktHp-~~V----qa~kdlIlrcL~DkD~SIRlrALdL---l~gmVskkNl~eIVk~ 375 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKILKTHP-KAV----QAHKDLILRCLDDKDESIRLRALDL---LYGMVSKKNLMEIVKT 375 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHHhhhCH-HHH----HHhHHHHHHHhccCCchhHHHHHHH---HHHHhhhhhHHHHHHH
Confidence 3445567789999999999988765433 222 3345677889999999999876544 4444556778889999
Q ss_pred HHHhhccCCch
Q 000098 2008 LLHALEDDQTS 2018 (2256)
Q Consensus 2008 Ll~~L~~~~~~ 2018 (2256)
|+..+...+.+
T Consensus 376 LM~~~~~ae~t 386 (877)
T KOG1059|consen 376 LMKHVEKAEGT 386 (877)
T ss_pred HHHHHHhccch
Confidence 99888765543
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00082 Score=86.49 Aligned_cols=461 Identities=17% Similarity=0.189 Sum_probs=253.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcch-HHHH
Q 000098 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV-HAVV 1302 (2256)
Q Consensus 1224 ~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i-~~il 1302 (2256)
++.+...+-|..++.-..+.+.. | .-+..++|-+.+++.. .+ . ..+.-+-.-+...|. ..|.. ...+
T Consensus 21 ~l~s~~~~kr~~a~kkvIa~Mt~-G-~DvSslF~dvvk~~~T---~d-l--elKKlvyLYl~nYa~----~~P~~a~~av 88 (734)
T KOG1061|consen 21 QLNSQSKEKRKDAVKKVIAYMTV-G-KDVSSLFPDVVKCMQT---RD-L--ELKKLVYLYLMNYAK----GKPDLAILAV 88 (734)
T ss_pred HhhhhhhhhHHHHHHHHHhcCcc-C-cchHhhhHHHHhhccc---CC-c--hHHHHHHHHHHHhhc----cCchHHHhhh
Confidence 44444445555555444433332 3 2245555655555432 11 1 233333333333332 22222 2345
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHH
Q 000098 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~ 1382 (2256)
..++....++++.+|..+...+..+ .-+...+++-.-+....+++++.+|+.++.+.+.+-..- ++......+++.
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~~~~~~~gl~~~ 164 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCL---RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-PDLVEDSGLVDA 164 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeE---eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-hhhccccchhHH
Confidence 6667788899999987554432211 112233333333334445667899999999988776543 333334578999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hHHhH
Q 000098 1383 LREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLV 1459 (2256)
Q Consensus 1383 L~~~l~~~~~~~~Re~al~al~~L~~~l~~-~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v~~i 1459 (2256)
+.+++.|+ ++.+-..|+-++..|.+.-.. ..-....++...++..+.+-+..-+-... +.+....+++ ....+
T Consensus 165 L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL---~~l~~y~p~d~~ea~~i 240 (734)
T KOG1061|consen 165 LKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFIL---DCLAEYVPKDSREAEDI 240 (734)
T ss_pred HHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHH---HHHHhcCCCCchhHHHH
Confidence 99999866 788888888888888876532 11122234455555555443333332222 2233333332 23456
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 1539 (2256)
+..+...+.+.+..+-.++...+-......+......+..+-|.++.++... +++...+..-+..+.....+ .+..-+
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~-~e~qyvaLrNi~lil~~~p~-~~~~~~ 318 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE-SEIQYVALRNINLILQKRPE-ILKVEI 318 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc-chhhHHHHhhHHHHHHhChH-HHHhHh
Confidence 6666666666666555566666666655544422233445555555544433 37766666665555443221 111111
Q ss_pred HHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000098 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2256)
Q Consensus 1540 ~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~ 1619 (2256)
..+.-...||- -++..-.+++..++. + .-+++
T Consensus 319 ~~Ff~kynDPi----------------------------------------YvK~eKleil~~la~---~-----~nl~q 350 (734)
T KOG1061|consen 319 KVFFCKYNDPI----------------------------------------YVKLEKLEILIELAN---D-----ANLAQ 350 (734)
T ss_pred HeeeeecCCch----------------------------------------hhHHHHHHHHHHHhh---H-----hHHHH
Confidence 11111112221 112122223333332 1 12445
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHH
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~ 1699 (2256)
++..+.....+-+.+.-..+.+|+|.++....+. ..+++.|++.+....++. -..+...+-.+.+.+...+ +.+++
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yv-vqE~~vvi~dilRkyP~~~-~~vv~ 426 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYV-VQEAIVVIRDILRKYPNKY-ESVVA 426 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccce-eeehhHHHHhhhhcCCCch-hhhhh
Confidence 6666667777777777778999999999877655 789999999888655553 2334444555555444332 55666
Q ss_pred HHHHhccC-CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1700 DIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1700 ~ll~~l~~-~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.+.....+ .+|..|.+.++.+|..+..+.+. ..++..+++...|+...|+..-+.|.-.
T Consensus 427 ~l~~~~~sl~epeak~amiWilg~y~~~i~~a-----~elL~~f~en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 427 ILCENLDSLQEPEAKAALIWILGEYAERIENA-----LELLESFLENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred hhcccccccCChHHHHHHHHHHhhhhhccCcH-----HHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 55555544 37889999999999988887663 3567778888888887777655544333
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.051 Score=73.23 Aligned_cols=778 Identities=16% Similarity=0.165 Sum_probs=366.7
Q ss_pred hcchHhHHHHHHhhhhhcccCCCCCCcchHhHHHHHHHHHcCCC-CCCchhhHHHHH------HhhcCC-----CCCCcH
Q 000098 955 NKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPK-RTGLHDDVLQML------YKHMDP-----LLPLPR 1022 (2256)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~-----~~~~~~ 1022 (2256)
.|....++.+-.||+... .-.-=++.++..++=++..-..+-. .......-|+.+ +.|+.. -..+--
T Consensus 190 ~e~flsl~~~~~yrllEn-~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~ 268 (1251)
T KOG0414|consen 190 DEDFLSLIVDPIYRLLEN-EHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGS 268 (1251)
T ss_pred HHHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456788899999998876 2223356666666666655443311 111122223333 333311 012233
Q ss_pred HHHHHHHHHHHcc------ccchHHHHHHHHHHHHhcCC---hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccc--CCC
Q 000098 1023 LRMISVLYHVLGV------VPSYQAAIGSALNELCLGLQ---PNEVASALHGVYTKDVHVRMACLNAVKCIPAVS--TRS 1091 (2256)
Q Consensus 1023 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~--~~~ 1091 (2256)
.+++..++.-++. .+...|.....|.+++.-+. -.++..++.-+=+..-..|.+.++.+-+..... +.+
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 4555555555542 23345556677777776443 345666666344455558988888776543110 001
Q ss_pred C-C----chhhhhhhhhhhccCCcHHHHHHHHHHHhhcC--CCCC----CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1092 L-P----ENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYG--YDFG----TDY-SGLFKALSHSNYNVRLAAAEALATALD 1159 (2256)
Q Consensus 1092 ~-~----~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~--~~~~----~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~ 1159 (2256)
. + ....+...+---.+|...-+|.-+-++|..+- ...+ +.+ ...+.-+.+.+.-||+.|.+.+..++.
T Consensus 349 ~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 0 0 00112333333447778888888888887621 1112 222 334445668899999999999999998
Q ss_pred hCCCcHH---HHHHHHHHHHHhhcC----CCCC-CCCCCcchhHHHHHHHHHhhhh----hccC------ChhHhHHHHH
Q 000098 1160 EYPDSIQ---GSLSTLFSLYIRDIG----LGGD-NVDAGWLGRQGIALALHSAADV----LRTK------DLPVIMTFLI 1221 (2256)
Q Consensus 1160 ~~~~~~~---~~l~~L~~~~~~~~~----~~~~-~~~~~~~~R~~~~~aL~~l~~~----~~~~------~~~~l~~~lv 1221 (2256)
.+|-... ..+..-.+-|..++. +... ..++.-..|......+-.-++- ...+ ..+.. ..+-
T Consensus 429 ~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~-~~~~ 507 (1251)
T KOG0414|consen 429 RHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEH-CLLE 507 (1251)
T ss_pred cCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhh-hhhh
Confidence 8874221 111112222322221 1100 0011111222111111000000 0000 00000 0110
Q ss_pred H--hhcCCCCHHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcc
Q 000098 1222 S--RALADTNADVRGRMLNAGIMIIDKHG--RDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297 (2256)
Q Consensus 1222 ~--~~l~D~~~~VR~~a~~a~~~~i~~~g--~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~ 1297 (2256)
. ....+.+.-++..+ ..++....- .+.+..-+|++.++|..... + .|.+ +++++. .|..++-+.
T Consensus 508 ~~~~s~~~~~~i~q~~~---~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~---t--eV~E-~Idfl~-~c~~F~I~g-- 575 (1251)
T KOG0414|consen 508 NEVESVPAENEIMQLKA---LVQFLEDAISFSDEMSEAIPIISQLLFSKTT---T--EVKE-AIDFLV-RCKQFGIDG-- 575 (1251)
T ss_pred hhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh---H--HHHH-HHHHHH-HHHHhCCCc--
Confidence 0 11111122222222 121111110 12355667888888765211 1 3433 666663 455443221
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc
Q 000098 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-E----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS 1372 (2256)
Q Consensus 1298 i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~----~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~ 1372 (2256)
-+.-+.+|+.....++.++++++..|-..+.-.... . ...++..|+..+. +.+.+.+.+--+.|..++..-.++
T Consensus 576 ae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~-~~s~~d~~slE~vl~~lv~~~~Id 654 (1251)
T KOG0414|consen 576 AEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLI-DASIGDLTSLEEVLCELVARGYID 654 (1251)
T ss_pred HHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHhCCCcc
Confidence 344567777766677777999888887666543321 1 1334555555443 333455555555555555533222
Q ss_pred cchhhcHHHHHHHHH--hCCC-CHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-
Q 000098 1373 SLKKYGIAATLREGL--ADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM- 1448 (2256)
Q Consensus 1373 ~~~~~~il~~L~~~l--~~~~-~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~- 1448 (2256)
..++..|.+.. +.+. ....+.+++..++.++.+...........++. -.++++. .-..+......++
T Consensus 655 ----~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~---iglg~p~--l~~~~L~~~s~i~~ 725 (1251)
T KOG0414|consen 655 ----AAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQ---IGLGEPR--LAVDVLARYSNIVD 725 (1251)
T ss_pred ----HHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHH---hccCcHH--HHHHHHHHHHHhhc
Confidence 24555555544 1111 22344677777777776654433333332222 1344421 1111111111111
Q ss_pred -hhh-----------hH-hhHHhHHHHHHHh--cc-CCChh-HHHHHHHHHHHHHhhChhhHhhh-----hhhHHHHHH-
Q 000098 1449 -SQL-----------SA-QGVKLVLPSLLKG--LE-DKAWR-TKQSSVQLLGAMAYCAPQQLSQC-----LPKIVPKLT- 1505 (2256)
Q Consensus 1449 -~~l-----------~~-~~v~~ilp~Ll~~--L~-~~~w~-~R~~a~~~Lg~la~~~p~~l~~~-----L~~Ivp~L~- 1505 (2256)
+.. +. +.+-+.+..++-+ .. +++|. +...++.++-.++. .|+.+... .......+.
T Consensus 726 ~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~-~Pe~la~~li~~~~~~~f~~~~~ 804 (1251)
T KOG0414|consen 726 PRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM-LPEVLATQLIRKLLKQDFESLEC 804 (1251)
T ss_pred ccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhhhhh
Confidence 111 00 1111223333222 22 44675 45557777777765 46554331 111111111
Q ss_pred H---hhcCCCHHHHHHHHHHHHH-HHhhcCc------hhHHhHHHHHHhh---------hCCCChhHHHHHHHHHh-ccc
Q 000098 1506 E---VLTDTHPKVQSAGQTALQQ-VGSVIKN------PEIASLVPTLLMG---------LTDPNDHTKYSLDILLQ-TTF 1565 (2256)
Q Consensus 1506 ~---~L~D~~~~VR~aA~~aL~~-l~~~i~~------~~i~~lv~~Ll~~---------l~d~~~~vr~al~~L~~-~~~ 1565 (2256)
+ ...|++..--..-++.+.. +...++. .+++.-++...+. -++.+. ++-+..-.. +.+
T Consensus 805 E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~~~~~e~k~~N~--~e~~s~t~~~~~~ 882 (1251)
T KOG0414|consen 805 EADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIKTELEEKKDKNQ--RENLSNTQRETQF 882 (1251)
T ss_pred hhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc--hhhhccccccccC
Confidence 0 0111111000000111111 1111111 1222222211110 000000 000000000 000
Q ss_pred ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh---hcCCCCcchhhhhhhhHHHHHhhc----CCCHHHHHH
Q 000098 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS---LVTEPKDMIPYIGLLLPEVKKVLV----DPIPEVRSV 1638 (2256)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~---~l~~~~~l~~~l~~Ll~~L~~~L~----d~~~~VR~~ 1638 (2256)
-... ......+.+.- ...+.-+|+ +.++ ...+..+.|.+...++ -.+|++|.+
T Consensus 883 ~~e~-------------dlig~tseDd~---~d~i~~icE~eLl~ge----k~lLg~f~piv~e~c~n~~~~sdp~Lq~A 942 (1251)
T KOG0414|consen 883 TVEL-------------DLIGGTSEDDL---ADLISGICEKELLYGE----KSLLGRFAPIVVEGCRNPGLFSDPELQAA 942 (1251)
T ss_pred Cccc-------------cccCCCcchhH---HHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHhcCCCcCCCHHHHHH
Confidence 0000 00011111111 112222222 1111 1234556666666664 356999999
Q ss_pred HHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 000098 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718 (2256)
Q Consensus 1639 a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~ 1718 (2256)
|.-|++.+.- +..+|...-+|.|+..+...+++.+|+.+..++|++.-.+. ..+++.-+.+...+.|+++.||..++.
T Consensus 943 AtLaL~klM~-iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fp-nlie~~T~~Ly~rL~D~~~~vRkta~l 1020 (1251)
T KOG0414|consen 943 ATLALGKLMC-ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP-NLIEPWTEHLYRRLRDESPSVRKTALL 1020 (1251)
T ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcc-cccchhhHHHHHHhcCccHHHHHHHHH
Confidence 9999998864 33456677889999999888888899999999999876553 346777888999999999999999999
Q ss_pred HHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCC
Q 000098 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND 1787 (2256)
Q Consensus 1719 ~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~ 1787 (2256)
.+..+-..---.. ..-++.+-.++.|+++.+|+.|..-+..+... + ..+=.++|.+...+.|.
T Consensus 1021 vlshLILndmiKV----KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k-~-n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1021 VLSHLILNDMIKV----KGQLSEMALCLEDPNAEISDLAKSFFKELSSK-G-NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHhhhhHh----cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc-c-cchhhhchHHHHhhccC
Confidence 8887654322221 22345667788999999998877666555332 1 23334667776666553
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=83.46 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhhhCCCC
Q 000098 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~Ll~~l~d~~ 1550 (2256)
.|++++.+|.+++...++.+..+++.|+|.++.++.|++++||..||++|.+++++.++. ++.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 589999999999999999999999999999999999999999999999999999988764 45889999999999999
Q ss_pred hhHHHHHHHH
Q 000098 1551 DHTKYSLDIL 1560 (2256)
Q Consensus 1551 ~~vr~al~~L 1560 (2256)
+.+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 9888654443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0017 Score=83.82 Aligned_cols=425 Identities=17% Similarity=0.196 Sum_probs=235.8
Q ss_pred hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1454 ~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
.++..++|.+++.....+-..|+..-.-+...+...|..-. ..++.++.-+.|++|.+|.-|.+.++.+.- +.
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~ 117 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DK 117 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEee---hH
Confidence 55667788888777766677777666666666666555422 234555666777788888777666554321 01
Q ss_pred hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1534 ~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
... .+..-+.++++|.++.+|+.++..+.++... ++...
T Consensus 118 i~e---------------------------------------y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~ 156 (734)
T KOG1061|consen 118 ITE---------------------------------------YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV 156 (734)
T ss_pred HHH---------------------------------------HHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc
Confidence 112 2233455666777778888877777777653 21111
Q ss_pred hhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc----CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~----~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2256)
+-..+++.|..++.|.+|.|-..|..++..+.+.-.. .....++..+++.+....+|. +. ..+.......
T Consensus 157 --~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~-qi---~IL~~l~~y~ 230 (734)
T KOG1061|consen 157 --EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWG-QI---FILDCLAEYV 230 (734)
T ss_pred --cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhh-HH---HHHHHHHhcC
Confidence 2345788888999999999999999999999875432 133566777777776654442 22 2233333333
Q ss_pred cHh--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000098 1690 GTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2256)
Q Consensus 1690 g~~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~ 1767 (2256)
..+ -...++..+...+++.++.|-.++...+-.+...+..--..++.++-|+++..+..+. .+.-.+++-...++..
T Consensus 231 p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred CCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 332 2456777777778888887777777777766665555333466777788888777665 6666666666655543
Q ss_pred hhccchhchHHHHHh-hc--CCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHH
Q 000098 1768 YATTSLPLLLPAVED-GI--FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2256)
Q Consensus 1768 ~~~~~~~~llp~L~~-~l--~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~ 1844 (2256)
... ++..-.. .. .++.-.+...-++.+..+. ..+..++
T Consensus 310 ~p~-----~~~~~~~~Ff~kynDPiYvK~eKleil~~la----------------------------------~~~nl~q 350 (734)
T KOG1061|consen 310 RPE-----ILKVEIKVFFCKYNDPIYVKLEKLEILIELA----------------------------------NDANLAQ 350 (734)
T ss_pred ChH-----HHHhHhHeeeeecCCchhhHHHHHHHHHHHh----------------------------------hHhHHHH
Confidence 321 1100000 00 0111112222222222221 1112233
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhch
Q 000098 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI 1924 (2256)
Q Consensus 1845 vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~l 1924 (2256)
++..+.....+.+.+.-..++.+++.++...... ..+++.+++.+ .-.-.-+-+.+...+..+.+++...+ +.+
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell----~~~~~yvvqE~~vvi~dilRkyP~~~-~~v 424 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELL----ETKVDYVVQEAIVVIRDILRKYPNKY-ESV 424 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHH----hhcccceeeehhHHHHhhhhcCCCch-hhh
Confidence 4444544445555554555556666555544333 44555555544 21112223334555566666655443 555
Q ss_pred HHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHH
Q 000098 1925 IPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRES 1984 (2256)
Q Consensus 1925 lp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~ 1984 (2256)
++.+...+..- +|+.|....|-+++-..... ....++..+.+.+.|+...|+-.
T Consensus 425 v~~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~en~~dE~~~Vql~ 479 (734)
T KOG1061|consen 425 VAILCENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFLENFKDETAEVQLE 479 (734)
T ss_pred hhhhcccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHHhhcccchHHHHHH
Confidence 55555444322 46677777776665544332 12345555566666666666543
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0013 Score=85.03 Aligned_cols=318 Identities=18% Similarity=0.202 Sum_probs=191.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-----CchHhHHH-HHHHHHHHcC-----CC--cHHHHHHHHHHHHHHH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGR-----LFEPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMM 1448 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~-----~~~pyv~~-llp~ll~~l~-----D~--~~~VR~aa~~al~~l~ 1448 (2256)
.+......+.+...-...+.++..+.+.... ...-|... ++|.++...- +. ++.+=+.+...+..++
T Consensus 46 kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv 125 (415)
T PF12460_consen 46 KLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIV 125 (415)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHH
Confidence 3333333333445555556666666554432 12344443 6666665432 11 2556666677777788
Q ss_pred hhhhHhhHHhHHHHHHHhcc----------CCC---hhHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHhh-cCCCH
Q 000098 1449 SQLSAQGVKLVLPSLLKGLE----------DKA---WRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVL-TDTHP 1513 (2256)
Q Consensus 1449 ~~l~~~~v~~ilp~Ll~~L~----------~~~---w~~R~~a~~~Lg~la~~~p~~l-~~~L~~Ivp~L~~~L-~D~~~ 1513 (2256)
..++.+.-..++..+...+. +.. +..+.. +..+..+..+.++.. .+....++..++... +..++
T Consensus 126 ~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~ 204 (415)
T PF12460_consen 126 RSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRL-VILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDE 204 (415)
T ss_pred HhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccH-HHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCCh
Confidence 88877654444544443322 122 222332 233333333333332 224456777776664 34458
Q ss_pred HHHHHHHHHHHHHHhhcCch-hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHH
Q 000098 1514 KVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAET 1592 (2256)
Q Consensus 1514 ~VR~aA~~aL~~l~~~i~~~-~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~v 1592 (2256)
..|..+++++..+...+.+. .++.++..+...... ......
T Consensus 205 ~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~--------------------------------------~~~~~~ 246 (415)
T PF12460_consen 205 FSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS--------------------------------------SEDSEL 246 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc--------------------------------------cCCcch
Confidence 89999999999888765433 345555544443310 011122
Q ss_pred HHHHHHHHHHHhhhc--CCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC----------------cCc
Q 000098 1593 KKKAAQIVGNMCSLV--TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG----------------EEN 1654 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l--~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g----------------~~~ 1654 (2256)
|..+..++.++.+.+ .. .|....++..+...+.| +.+...++++++.+..... ..+
T Consensus 247 ~~~~~~~~~Wi~KaLv~R~----~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 247 RPQALEILIWITKALVMRG----HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred hHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 222333333333211 11 12333455556666666 6677788888887765421 125
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
|..++|.+++...+..+. .|.....+++.+++....+ .++.++|-+++.+.-++..++.+++.++..+.....+-
T Consensus 321 F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 788999999988874433 6777788999999988876 56789999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 000098 1731 FQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~ 1745 (2256)
+.+|++.++|.+++.
T Consensus 400 i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 400 ISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999998864
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0043 Score=76.10 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=49.1
Q ss_pred ccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch-hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000098 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2256)
Q Consensus 2070 ~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~ 2140 (2256)
.|+..|++.++- .+.-+|..|..|+.++.....+ ...+.+...|..++.|.+.++|--|..++..+-
T Consensus 487 ~yvrhIyNR~iL----EN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLIL----ENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHH----hhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 466666666543 3567899999999998887644 445666667777788888999998888887763
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00099 Score=85.99 Aligned_cols=275 Identities=19% Similarity=0.217 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc-----c-CCChhhhhhhhhHHHHHHHHHHhhhccC--CcchHHH
Q 000098 1230 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-----K-ASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAV 1301 (2256)
Q Consensus 1230 ~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~-----~-~~~~~~~~~vr~~av~~L~~La~~l~~~--~~~i~~i 1301 (2256)
+.+-..+...+..++...+.+.-+.++..+..++.. + ..............+..+..+-..++++ -|....+
T Consensus 111 ~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~l 190 (415)
T PF12460_consen 111 DRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEEL 190 (415)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHH
Confidence 667777777777777777665555555444443320 0 0000000001122334444444445443 2456677
Q ss_pred HHHHHHH-cCCCCHHHHHHHHHhhHHhHHhhc--CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccch-hh
Q 000098 1302 VDKLLDV-LNTPSEAVQRAVSSCLSPLMQSMQ--DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY 1377 (2256)
Q Consensus 1302 l~~Ll~~-L~~~~~~Vq~~~~~~L~~lv~~~~--~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~-~~ 1377 (2256)
+..++.. +...++..+..+++++..++.++. +...+.+..+...+........|..+...+..+.+++=...-+ -.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~ 270 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT 270 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH
Confidence 8888774 455568888899999999998863 3356667766666633334567788888887777765211111 11
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc--------Cc-----hHhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGR--------LF-----EPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~--------~~-----~pyv~~llp~ll~~l~D~~~~VR~aa~~al 1444 (2256)
.+.+.+.+.+.+ +.....+..+|+.+....+. .. ..+...++|.+++.+.+.+...|..-..|+
T Consensus 271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 271 ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 466666666654 55677778888888765221 11 123557899999999988888888889999
Q ss_pred HHHHhhhhHhh----HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh
Q 000098 1445 RAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507 (2256)
Q Consensus 1445 ~~l~~~l~~~~----v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~ 1507 (2256)
..+.+++|..- ++.++|.+++.++-++...+.++++.|..+....|+.+..++..++|.+++.
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 99999988754 4789999999999899999999999999999999999999999999998763
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.014 Score=71.88 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh-hChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1693 ~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~-~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
.+.++.|.+-..+.+.-.-|-..+...+..++.. .|++ +++..+..+-..|..+.-..|-.|++.+.++...+..
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~---~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~- 336 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQ---FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ- 336 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-
Confidence 4555666666666665555655566666655543 3655 4566667777777777777888888888887665543
Q ss_pred chhchHHHHHhhcCCCCHHHHHHHH
Q 000098 1772 SLPLLLPAVEDGIFNDNWRIRQSSV 1796 (2256)
Q Consensus 1772 ~~~~llp~L~~~l~d~~~~iR~~sv 1796 (2256)
.+..--+.++..+.|.|..+..-++
T Consensus 337 kv~vcN~evEsLIsd~Nr~IstyAI 361 (898)
T COG5240 337 KVSVCNKEVESLISDENRTISTYAI 361 (898)
T ss_pred eeeecChhHHHHhhcccccchHHHH
Confidence 2333446677777777665544443
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.081 Score=72.91 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH
Q 000098 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1654 ~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~-l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~ 1732 (2256)
.|+.++..++..+. ++...+|..|..+++.++..=..-. ...+...+-..+.|....||++++.++|....+..+
T Consensus 813 sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--- 888 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--- 888 (1692)
T ss_pred hhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH---
Confidence 35667777777777 4667799999999999876432211 144556677788899999999999999977766655
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc-chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~-~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
+..+....+...+.|+.-.||..+.+.++.|+..+.+- -+..+...+.....|+.-.|..-+.+.+-.+.|.
T Consensus 889 -~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 889 -LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred -HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 44455566777888999999999999999998766532 2333455555566777777888888888888764
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-05 Score=102.35 Aligned_cols=342 Identities=17% Similarity=0.206 Sum_probs=221.1
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHH
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2256)
.+..+...+.-..+..-..++.++-.++...|... ...++ +.+..+. +..+|..+...+.++.+..|.......
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~-~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI-KHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc-ccCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34455555555666666777888888888777431 11222 2222222 334788888888888877776521111
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHH--------HH
Q 000098 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE---NESVRDAALGAGHVL--------VE 1766 (2256)
Q Consensus 1698 l~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~---~~~VR~~Al~al~~i--------v~ 1766 (2256)
.+......++.+....|.....+..+--+.......++ +..-+......+... .+
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 13334444555555555433223222222233333222 211111111100000 00
Q ss_pred Hhh----ccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhh
Q 000098 1767 HYA----TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2256)
Q Consensus 1767 ~~~----~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~ 1842 (2256)
++. .+..+.+-+.+...+.+++|+-|.++++-+...+....+ . -.. ...
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~-~---------~~~-----------------~~~ 293 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKK-E---------IVK-----------------GYT 293 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcccc-c---------ccc-----------------Ccc
Confidence 110 112344667888889999999999999988887632110 0 000 001
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchh
Q 000098 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2256)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~ 1922 (2256)
+.+...+-....|.+..|-..++..+..++...+..+.++....++.+++.+.+....+|.....++..++. ...+.
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~ 370 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPLS 370 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHH
Confidence 111222233468999999999999999999999888999999999999999999999999999999988887 33467
Q ss_pred chHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhh-HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhH
Q 000098 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2256)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l-~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~ 2001 (2256)
.+.+.+..++.+.+|..|.....++...+...++... ..-.+.++|.+....+|.+.+||.+|..+++.+++.+|...+
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7788888899999999999988888888887774322 334578999999999999999999999999999999998776
Q ss_pred HhHHHHHH
Q 000098 2002 DEIVPTLL 2009 (2256)
Q Consensus 2002 ~~ilp~Ll 2009 (2256)
..++..+-
T Consensus 451 ~k~L~~~~ 458 (815)
T KOG1820|consen 451 KKLLKDLD 458 (815)
T ss_pred HHHHHhhc
Confidence 65555433
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.13 Score=72.49 Aligned_cols=292 Identities=18% Similarity=0.210 Sum_probs=190.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhh
Q 000098 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2256)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~ 1965 (2256)
..+...+..+++..|-.+.++++.++...++. +...+.....+.+.+. ++..|.+...+++.+-+..|.-.-.+++.+
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 33455667889999999999999999998876 5677777777767654 688899999999999888876544567788
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhchhh---HHhHHHHHHHhhccCCch-HHHHHHHHHHHhhhcccchhhh
Q 000098 1966 LIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHI 2040 (2256)
Q Consensus 1966 li~~l~~~L~D~~~-~VR~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~al~~L~~il~~~~~~~lp~l 2040 (2256)
-+..+....+|+.. .|+..+..++..+....|+.. +...+..++..|-+.... .....++. +.+.|
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~-------R~~~~-- 1029 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYN-------RCFNG-- 1029 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhc-------ccccc--
Confidence 88888888899876 999999999998888777643 333333333444332211 00011111 11111
Q ss_pred hhhhhcCchhhhHHHHHHHHHHHhCCCccccHh---------hHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc-chhcH
Q 000098 2041 LPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG---------TILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGV 2110 (2256)
Q Consensus 2041 i~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~---------~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~-~~~~~ 2110 (2256)
-...+++..+.|+.+.+... ..+-...-.+.+++..+...+.+|+..+-... ..-..
T Consensus 1030 -------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~ 1096 (2067)
T KOG1822|consen 1030 -------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL 1096 (2067)
T ss_pred -------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH
Confidence 01233455555655554332 12222222235567788899999999998754 34668
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHH--------------------HHHHHHcC-CCChHH
Q 000098 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMI--------------------STLIVLLS-DSDSTT 2169 (2256)
Q Consensus 2111 ~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il--------------------~~L~~~l~-D~d~~V 2169 (2256)
+.+++.+...+.+.-.-.|.+++.++..+.++.......|...+. ..++.+++ ..|...
T Consensus 1097 ~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l 1176 (2067)
T KOG1822|consen 1097 DSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKL 1176 (2067)
T ss_pred HHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHH
Confidence 999999999998887778888888888876654333333322221 12334444 346778
Q ss_pred HHHHHHHHHHhhccCCCCchhchHHHHHHHHh
Q 000098 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2170 r~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
+++...++.++...+-.+.+..++-.....+.
T Consensus 1177 ~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~ 1208 (2067)
T KOG1822|consen 1177 LKNILETLSRMLNSLADELLSSWLMLLKDLLQ 1208 (2067)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999999997666655656666665555555
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-05 Score=101.49 Aligned_cols=364 Identities=16% Similarity=0.182 Sum_probs=222.2
Q ss_pred chHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC
Q 000098 1254 LLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333 (2256)
Q Consensus 1254 ~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~ 1333 (2256)
.+++....+|..+. ..+|+....++..+... + + +...+..++..++-..+..-..++.++..++..++.
T Consensus 63 ~l~~~~~~~l~~~~------~~~~~~~~~~~~~i~~~-~--~--~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~ 131 (815)
T KOG1820|consen 63 QLLSFGLKCLDSKR------VNIRDTKTQSLLRIGKL-E--D--IKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGK 131 (815)
T ss_pred eeccchhhhccccc------ccccCcchhHHHHHHHh-h--h--hHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcC
Confidence 45666666766431 13455555555555321 1 1 345566666655555544445566777778776643
Q ss_pred ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1334 EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1334 ~~--~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
.. ...+...+..+. +.++|..+...+..+.+..|...... +. +..+...++.+....|
T Consensus 132 p~~~~~~~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~--~~---------------~~~~~~l~~~~~~~~~ 191 (815)
T KOG1820|consen 132 PKVPSKAFIKHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPL--LF---------------KASAPGLMGKLGSYQG 191 (815)
T ss_pred CCCccccccccCcccc---ccccchhhcccchhhhhhcCCCcCcc--cc---------------hhhhHHHHHHHHhhcc
Confidence 21 122222233333 56899999999999998888655431 10 1112222233333333
Q ss_pred cCchHhHHHHHHHHHHHcC---CCc---------HHHHHHHH-HHH-HHHHhhhhHhhH-HhHHHHHHHhccCCChhHHH
Q 000098 1412 RLFEPYVIQMLPLLLVAFS---DQV---------VAVREAAE-CAA-RAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQ 1476 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l~---D~~---------~~VR~aa~-~al-~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~ 1476 (2256)
.....+..+--+....... |++ ..++.... .+. ..-...++..++ ..+-+.+...+.+.+|..|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~ 271 (815)
T KOG1820|consen 192 KSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRK 271 (815)
T ss_pred ccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHH
Confidence 2211111111111111111 111 11111110 000 000111222333 56667777888899999999
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhhhCCCChh
Q 000098 1477 SSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDH 1552 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~Ll~~l~d~~~~ 1552 (2256)
.|++.+....+.........+..++ ..+...+.|.+..|-..++.+|..++..++.. +...+.|.++..+.+....
T Consensus 272 Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~ 351 (815)
T KOG1820|consen 272 EALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSE 351 (815)
T ss_pred HHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHH
Confidence 9999999988876633333333343 33444578999999999999999999988754 4578889999999887766
Q ss_pred HHH----HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1553 TKY----SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1553 vr~----al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
+|+ +++..++ .-.+..+.+.+..++++.++..|..+...+.......+.......-...++|.+....
T Consensus 352 l~d~l~~~~d~~~n--------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~ 423 (815)
T KOG1820|consen 352 LRDALLKALDAILN--------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHI 423 (815)
T ss_pred HHHHHHHHHHHHHh--------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhc
Confidence 664 4444433 2245668899999999999999999888887777654322233445678899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
+|.+..||.++..+++.+...+|++.+.
T Consensus 424 ~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 424 NDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999976333
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=81.31 Aligned_cols=245 Identities=18% Similarity=0.193 Sum_probs=159.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
....+.....|.+..||..|.+++-.+-+.+ ..-........+.+.|++..+|.++++++--+....++... .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e-----~ 271 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE-----R 271 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc-----c
Confidence 3344667778889999999999877765422 22223555667788999999999999998877644332110 0
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHH--------
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMN-------- 1888 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~-~Ll~-------- 1888 (2256)
..++ . ...+.++..+|....|.++.||-.|...++.+-......+.+.+. .++.
T Consensus 272 e~~e---------~--------kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a 334 (823)
T KOG2259|consen 272 ESEE---------E--------KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA 334 (823)
T ss_pred hhhh---------h--------hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc
Confidence 0000 0 122467788888899999999998888887765433322222111 1222
Q ss_pred ------------------------------------------HHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHH
Q 000098 1889 ------------------------------------------TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2256)
Q Consensus 1889 ------------------------------------------~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp 1926 (2256)
.++..+.|.-+++|.+|...++.++.. .+.+-..-+.
T Consensus 335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~ald 413 (823)
T KOG2259|consen 335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVRALD 413 (823)
T ss_pred ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 122333444567899998888888753 3345667778
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH
Q 000098 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2256)
Q Consensus 1927 ~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp 2006 (2256)
.|.+.++|+...+|..+..++..|..... .-++.++.+.+++.|.+.+||++.-..+... +......++-.+.
T Consensus 414 fLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 414 FLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVA 486 (823)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHH
Confidence 88888998888999999998887765421 1245677888889999999998776554432 2223345555666
Q ss_pred HHHHhhcc
Q 000098 2007 TLLHALED 2014 (2256)
Q Consensus 2007 ~Ll~~L~~ 2014 (2256)
.|+..|..
T Consensus 487 ~lL~~L~k 494 (823)
T KOG2259|consen 487 HLLKNLGK 494 (823)
T ss_pred HHHHHhhh
Confidence 66766654
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.13 Score=66.06 Aligned_cols=286 Identities=21% Similarity=0.218 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHH
Q 000098 1634 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713 (2256)
Q Consensus 1634 ~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR 1713 (2256)
.-.-.|+-|+|.|-...|.+ +...|.+.|++.+...+|.+++-++|-.. +|.. -.++...+...+...+.-.-
T Consensus 394 y~EGGalyAlGLIhA~hG~~----~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa-~~eiYe~lKevLy~D~AvsG 466 (929)
T KOG2062|consen 394 YKEGGALYALGLIHANHGRG----ITDYLLQQLKTAENEVVRHGACLGLGLAG--MGSA-NEEIYEKLKEVLYNDSAVSG 466 (929)
T ss_pred ccccchhhhhhccccCcCcc----HHHHHHHHHHhccchhhhhhhhhhccchh--cccc-cHHHHHHHHHHHhccchhhh
Confidence 33446777888777655544 67777788888777888999888776543 3322 12344445555544444444
Q ss_pred HHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHH
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~-~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR 1792 (2256)
+++...+|-+...... .+.+.-++....+. ++.+..+..-.+. + -.|+.. ...-|.+.+.+.|.+.-+|
T Consensus 467 EAAgi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl~vGia-L-~~ygrq--e~Ad~lI~el~~dkdpilR 536 (929)
T KOG2062|consen 467 EAAGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGLAVGIA-L-VVYGRQ--EDADPLIKELLRDKDPILR 536 (929)
T ss_pred hHHHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHHHHhHH-H-HHhhhh--hhhHHHHHHHhcCCchhhh
Confidence 4554444433322111 22333333333332 2333222111111 1 122221 1122444455566677777
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH-HhcCCcHHHHHHHHHHHHHH
Q 000098 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKTI 1871 (2256)
Q Consensus 1793 ~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~-~~~D~~~~Vr~aA~~~l~~l 1871 (2256)
...+-.++-- +.-+| .+.++..|.. ..+|.+..||.+|.-.++-+
T Consensus 537 ~~Gm~t~alA-y~GTg---------------------------------nnkair~lLh~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 537 YGGMYTLALA-YVGTG---------------------------------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred hhhHHHHHHH-HhccC---------------------------------chhhHHHhhcccccccchHHHHHHHHHheee
Confidence 7655443321 11000 1122333333 37899999999999988866
Q ss_pred HhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHH
Q 000098 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2256)
Q Consensus 1872 ~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii 1951 (2256)
.-..|..+ |..+..+. .+-|+.+|..++-+||-.|...|.. ..+..|.....|+..-+||++|.+++-|+
T Consensus 583 l~~dp~~~----~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 583 LFRDPEQL----PSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred EecChhhc----hHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 65555433 33444332 4568999999999999998766654 33444555556777789999999999888
Q ss_pred HhhChhhhHhhHhhHHHHHHHHhcCCCHHH
Q 000098 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEV 1981 (2256)
Q Consensus 1952 ~~~~~~~l~~~l~~li~~l~~~L~D~~~~V 1981 (2256)
..+.+ .+.|-...+...+.+.+.|.++++
T Consensus 653 ~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 653 IQQTE-QLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred Hhccc-ccCchHHHHHHHHHHHhhhhhhHH
Confidence 76654 344556667777777778877664
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0044 Score=77.68 Aligned_cols=106 Identities=15% Similarity=0.009 Sum_probs=77.9
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-cH-------
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GT------- 1691 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~-g~------- 1691 (2256)
+..++.....|.++.||..|++++-++.+ |-+....+.....+.+.+ ....+|..|.+.+.-..+.+ ++
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD-~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSD-DYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 45567788889999999999999988887 444345566777777766 44558998888776665554 11
Q ss_pred -hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhC
Q 000098 1692 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1692 -~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g 1728 (2256)
...+..+..+...++|-+..||..+..++|.+-.+-.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 1335677778888899999999999999987765543
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00051 Score=83.09 Aligned_cols=195 Identities=19% Similarity=0.158 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~--~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
...++..++..+..++....|.+|.+-|-.+...-+...+.+ ..++..+.+.+.+.++...|+.|+..++.+++.-..
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 356777888888777677888988887777766443333331 268888888888867889999999999999998777
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAV-REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~V-R~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~ 1491 (2256)
.|..+....+-.++++-.|.++.| |.++.+|+..+..+.+-..+..+-|.++. .+...-.+++..+..+.+..+.
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 788888888888889888887755 66666777777777777677777666655 3333444566788888887754
Q ss_pred -hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1492 -QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1492 -~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
.+...++.|.|.+++........||+.|..||-.+...++..
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 577888999999999999999999999999999999888743
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0047 Score=74.36 Aligned_cols=515 Identities=18% Similarity=0.190 Sum_probs=254.1
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhH--------H-HHHhhcCCCHHHHHHHHHHHHHHHHh----------
Q 000098 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP--------E-VKKVLVDPIPEVRSVAARAIGSLIRG---------- 1649 (2256)
Q Consensus 1589 ~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~--------~-L~~~L~d~~~~VR~~a~~aL~~L~~~---------- 1649 (2256)
...+|..|...+..+.+.+ ..+.+..|...++| . +.-.++|++++.|..|...+..+.++
T Consensus 9 ~akvr~~al~~~~~~~~~~-~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSI-EKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHhhHHHHHHHHHhhh-hhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 3466666666665555432 12333334433333 1 22347899999999998888777653
Q ss_pred hCcCchHH-----------HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHH
Q 000098 1650 MGEENFPD-----------LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVR 1713 (2256)
Q Consensus 1650 ~g~~~~~~-----------lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR 1713 (2256)
.|+..|.. ....|+-.|..+..+.+-.....+++.++..-.-+ .+.++...+....++.++.||
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 34443322 22334444444555556666777788877665544 335667777778888999999
Q ss_pred HHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHHHHHhhccchhchHHHHHh----h
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA------LGAGHVLVEHYATTSLPLLLPAVED----G 1783 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~A------l~al~~iv~~~~~~~~~~llp~L~~----~ 1783 (2256)
..++..++.+..+-.. .|.+-..+..+- .-|..+ .+.++.+.. ..-+.++.. +
T Consensus 168 vs~l~~~~~~v~t~~~---------~pei~~~~~~~~-s~~n~~~~h~s~~~~~~~l~~-------~~~~~e~~~~~~~~ 230 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTHAP---------LPEVQLLLQQPC-SSSNSATPHLSPPDWWKKLPA-------GPSLEETSVSSPKG 230 (728)
T ss_pred hHHHHHHHHHHhcCCC---------CHHHHHHhcCCC-ccccccCCCCCChHHHHhcCC-------CchhhhhccCCccC
Confidence 9888888877654332 122222222110 000000 000111000 000011110 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHH
Q 000098 1784 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1863 (2256)
Q Consensus 1784 l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~a 1863 (2256)
-.+.+|-+|.- .. ++. .-.++.- .+......+|. ...+ ..+|-.
T Consensus 231 ~~~~~~~i~~~-----~~----i~~---------~~~~~s~----~~~~~~~~~~~-------------~~~p-s~~rle 274 (728)
T KOG4535|consen 231 SSEPCWLIRLC-----IS----IVV---------LPKEDSC----SGSDAGSAAGS-------------TYEP-SPMRLE 274 (728)
T ss_pred CCCCcceeeee-----ee----eee---------cCCcccc----chhhHHhhhcC-------------ccCC-chhHHH
Confidence 11233333210 00 000 0000000 00111111111 1122 247888
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhc----------hHHHHh-h--
Q 000098 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS----------IIPILS-R-- 1930 (2256)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~----------llp~L~-~-- 1930 (2256)
+.+++..++.+.+ ..+-+.-.+...+..++.+..+.++..++.++..+...++.++.|+ +.-++. .
T Consensus 275 ~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~ 353 (728)
T KOG4535|consen 275 ALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL 353 (728)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence 8888888776553 3456777777888888899999999999999999887776432211 111111 0
Q ss_pred ---hcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhchhhHHhHHH
Q 000098 1931 ---GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2256)
Q Consensus 1931 ---~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~-~~VR~~A~~al~~l~~~~g~~~~~~ilp 2006 (2256)
......+...-..|.++..+..... ..+.+...+..+.+.....|.. .-||.+|..+.+.++-+-|....--++
T Consensus 354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f-~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv- 431 (728)
T KOG4535|consen 354 PRALYDSEHPTLQASACDALSSILPEAF-SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV- 431 (728)
T ss_pred hhhhhhhcCCCchhHHHHHHhhcCchhh-cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH-
Confidence 1111123445567777665532211 0111111233444433333333 336777777766655433321100000
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhC---CCcccc----HhhHHHHH
Q 000098 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---PGLNFH----LGTILPAL 2079 (2256)
Q Consensus 2007 ~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g---~~l~~~----l~~Ilp~L 2079 (2256)
.++..++..++..+ .+.- ..-.+-+++.+...+. +....+ ....+..+
T Consensus 432 ------------~~aa~~il~sl~d~--~ln~-----------r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 432 ------------ADAANAILMSLEDK--SLNV-----------RAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred ------------HHHHHHHHHHhhhH--hHhH-----------HHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 11111111111100 0000 0000111121111111 111111 11222222
Q ss_pred HHhh--C-CCCHHHHHHHHHHHHHHHhhcc---hhcHHHHHHHHHhhcC-----CCChhhHHHHHHHHHHHHHhchh--h
Q 000098 2080 LSAM--G-DDDMDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVG-----DNQASIRRSSAYLIGYFYKNSKL--Y 2146 (2256)
Q Consensus 2080 l~~l--~-~~~~~vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l~-----~~~~~vR~~A~~~l~~l~~~~~~--~ 2146 (2256)
.+.- . -....++..+.++++.+.+.++ +.+...+++.=+..+. .....+|-++|+++|.++++-.. .
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 2211 1 1245688899999999888654 3455555554333332 33578999999999999987544 3
Q ss_pred hhhhHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhccCC
Q 000098 2147 LVDEAPNMISTLIVLLSD-SDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2147 ~~~y~~~il~~L~~~l~D-~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
-.++.+.+++.|..++.| .|-.||.+|..+|..-.++.+
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 456788889998887754 678999999999988766554
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.2 Score=63.83 Aligned_cols=349 Identities=15% Similarity=0.188 Sum_probs=194.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhccCc-hHhHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQML 1422 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l----~~~~~~~~Re~al~al~~L~~~l~~~~-~pyv~~ll 1422 (2256)
++..+.++.-.-..+.-++..- .+++..+.+.+ .+. |+...--|+. .++..-++.+ +.|-.++-
T Consensus 84 ss~kysEKqIGYl~is~L~n~n-------~dl~klvin~iknDL~sr-n~~fv~LAL~---~I~niG~re~~ea~~~DI~ 152 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNEN-------SDLMKLVINSIKNDLSSR-NPTFVCLALH---CIANIGSREMAEAFADDIP 152 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcc-------hHHHHHHHHHHHhhhhcC-CcHHHHHHHH---HHHhhccHhHHHHhhhhhH
Confidence 4445555554444444444432 13444443333 222 4444434444 4444333333 33333333
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Iv 1501 (2256)
..+ .-++..+.||+.|+-|+-++.+..++-. .......++..|+|++.++-.++..++..++...|+....+++.-+
T Consensus 153 KlL--vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av 230 (938)
T KOG1077|consen 153 KLL--VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV 230 (938)
T ss_pred HHH--hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH
Confidence 222 2467789999999999999988755321 2467778888899999888888999999999998888777766655
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH-hhcCchhHHhHHHHHHhhhCCCC-hhHHHHHHHHHhcccccCCChhhHhhHHH
Q 000098 1502 PKLTEVLTDTHPKVQSAGQTALQQVG-SVIKNPEIASLVPTLLMGLTDPN-DHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~-~~i~~~~i~~lv~~Ll~~l~d~~-~~vr~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
..+.......... +.... -.+++|++..=+-.++.....|. ..+| ..+..
T Consensus 231 s~L~riv~~~~t~--------~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r--------------------~~l~e 282 (938)
T KOG1077|consen 231 SRLSRIVVVVGTS--------LQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR--------------------ARLNE 282 (938)
T ss_pred HHHHHHHhhcccc--------hhhceeecCCChHHHHHHHHHHHhCCCCCCchHH--------------------HHHHH
Confidence 5544332211100 00000 11233444221112222222221 1222 11111
Q ss_pred HHHHhhcC-------CCH---HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1580 IVHRGLRE-------RSA---ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1580 ~L~~~L~d-------~~~---~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
++.+.|.. ++. ..+.....-.-+++..+ |++ ...+..-+..|-+++.+....+|.-+...+..++..
T Consensus 283 vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~-D~e--~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss 359 (938)
T KOG1077|consen 283 VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL-DSE--PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS 359 (938)
T ss_pred HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc-CCc--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc
Confidence 22221110 011 11111111111222211 211 123444556677777788888898888887777754
Q ss_pred hC-cCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhC
Q 000098 1650 MG-EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1650 ~g-~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g 1728 (2256)
-. -+....-...++..|+.+.+..+|..+..-|-.++. .+....++..+++.+.+.++.+|+....-..-++..+.
T Consensus 360 ~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 360 EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 11 011223355566778877888899998887766654 34556788888888888999999999888899999998
Q ss_pred hhHHHHHHHHHHHHH
Q 000098 1729 VQFQNYLQQVLPAIL 1743 (2256)
Q Consensus 1729 ~~f~~yl~~ilp~Ll 1743 (2256)
.++.-|++.++..+-
T Consensus 437 tDy~WyVdviLqLir 451 (938)
T KOG1077|consen 437 TDYSWYVDVILQLIR 451 (938)
T ss_pred CCcchhHHHHHHHHH
Confidence 888888877766553
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.079 Score=68.52 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=92.3
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~ 1654 (2256)
..+.|.+...++++...+-..++..+..+... ....+.| -+..+..++..+.+-+|.+|.+.|..++...+..
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~- 316 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA- 316 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc-
Confidence 34667788888888888888888888887763 2233333 5667778888999999999999999998765432
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~ 1729 (2256)
..-+=+-| +.|-++. .|.-+..++..+.+.......+.+|..+-..+.+-+..-+.....++..++..++.
T Consensus 317 v~~cN~el-E~lItd~---NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 317 VTVCNLDL-ESLITDS---NRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred ccccchhH-Hhhhccc---ccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 11111112 2222222 46667777777777666666666666665555554445455555555555555554
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.25 Score=63.99 Aligned_cols=194 Identities=19% Similarity=0.223 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1334 ~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~-~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
...+.|+.|.+...++.-...||.|+.||..+.+.+...... .-|+.+.+.++ |-.|+..-..++..+..+...-.
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd- 95 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD- 95 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc-
Confidence 356788888888888877889999999999999865332221 12233333332 33344333322222211111100
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
.| ...|.+..+-+...+-...+... +..+..++..++..+.++|..+++++.++..+.|.+
T Consensus 96 --~~-----------~v~dds~qsdd~g~~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e 156 (970)
T KOG0946|consen 96 --SP-----------EVMDDSTQSDDLGLWIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE 156 (970)
T ss_pred --ch-----------hhcccchhhhHHHHHHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH
Confidence 00 00111112222223333222211 456778888999999999999999999999999987
Q ss_pred Hhh---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhhhCCC
Q 000098 1493 LSQ---CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1493 l~~---~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~Ll~~l~d~ 1549 (2256)
+.. .+|.-+..++.+|.|.+.-+|..+.--|..+.+..++- .++.++..|+..+...
T Consensus 157 ~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 157 LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 654 45777888999999999999999999998888764431 1255666777777543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0021 Score=81.19 Aligned_cols=239 Identities=18% Similarity=0.145 Sum_probs=147.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
.++.+...+....+..++..+..++... . .+ ..+..++..+.|.++.||..+..+++.+- -..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~----~---~~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------~~~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ----E---DA---LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------GRQ 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc----C---Ch---HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------chH
Confidence 4555666664444566665544433211 1 11 13667778888999999999988887552 234
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
..+.+...+.+.++.+|.+++.+++..- ..-.+.+...++|+++.||..|+.+|+.+... ..
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a 179 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-------LS 179 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cc
Confidence 5677778888999999998887777521 12245577778899999999999999987642 34
Q ss_pred HHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1539 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+|.|...+.|+++.+|. ++..+.... +. ...+.+.....+.++..+.....++... ++
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~lG-----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~-------- 238 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLAG-----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG-------- 238 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHcC-----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------
Confidence 45566778888888874 555554311 01 1223333333444444444333333222 11
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i 1685 (2256)
+..++.|..++.|+. +|..++.++|.+.. +..++.|++.+.++. .+..+..++..|
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 145667777777754 88888888886653 457788877776532 556565555544
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.4e-05 Score=69.29 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1472 w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2256)
|++|.+|+.+||.++...++.+..+++.++|.|..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999865
|
... |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0035 Score=79.11 Aligned_cols=247 Identities=23% Similarity=0.251 Sum_probs=156.0
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2256)
...+.+...+.|++..+|..+...++.+ +....+|.+...+.+.++.+|..++.+||.+-. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4566777788899999999988775443 346788999999999999999999998886432 45
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC------------hhHH-HHHHHHHhccc
Q 000098 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2256)
Q Consensus 1500 Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~------------~~vr-~al~~L~~~~~ 1565 (2256)
.+|.+++.+. |.+..||..|.++|+.+...- -+..++..+.++. ..+| .++..+...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 6677777777 899999999999999886432 1334444555443 1233 233343321
Q ss_pred ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2256)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~ 1645 (2256)
......+.+.+++.+....+|..+...++.+.... ..+.+.+...+.|+++.+|..+..++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234566777777777788888777777665421 2355677777888888888888777765
Q ss_pred HHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhH
Q 000098 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2256)
Q Consensus 1646 L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La 1724 (2256)
+.. ....+.+...+.++ +...+.......+ ..........+...+.+....+|..+...++.+.
T Consensus 240 ~~~-------~~~~~~l~~~l~~~-~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 240 IGD-------EEAVDALAKALEDE-DVILALLAAAALG-------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred cCc-------chhHHHHHHHHhcc-chHHHHHHHHHhc-------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 442 34455555555553 3334433333332 1111222333444555666666666665555443
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.033 Score=67.38 Aligned_cols=498 Identities=17% Similarity=0.161 Sum_probs=256.6
Q ss_pred CHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHH--------HHH-HHcCCCcHHHHHHHHHHHHHHHhh----------h
Q 000098 1392 SAKRREGALLAFECLCEKLG-RLFEPYVIQMLP--------LLL-VAFSDQVVAVREAAECAARAMMSQ----------L 1451 (2256)
Q Consensus 1392 ~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp--------~ll-~~l~D~~~~VR~aa~~al~~l~~~----------l 1451 (2256)
..++|.+|+.+|..+...+. +.|-.|...++| .++ -.++|+++..|..|.+.+..+..- +
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 46889999999998888776 455666554443 333 357899999999888877765421 1
Q ss_pred hHhhH-----------HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhh-Hh-hhhhhHHHHHHHhhcCCCHHHHH
Q 000098 1452 SAQGV-----------KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-LS-QCLPKIVPKLTEVLTDTHPKVQS 1517 (2256)
Q Consensus 1452 ~~~~v-----------~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~-l~-~~L~~Ivp~L~~~L~D~~~~VR~ 1517 (2256)
+++.+ ......++-.+. +....+-...+.+|..+....|-. +. ..+-+++..+.++++++++.||.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 11111 111111222222 333444445667777777766643 21 24457788888899999999999
Q ss_pred HHHHHHHHHHhhcC-chhHHhHHHHHHh--hhCCCChhHHHHHHHHH------hcccccCCChhhH--------------
Q 000098 1518 AGQTALQQVGSVIK-NPEIASLVPTLLM--GLTDPNDHTKYSLDILL------QTTFVNTVDAPSL-------------- 1574 (2256)
Q Consensus 1518 aA~~aL~~l~~~i~-~~~i~~lv~~Ll~--~l~d~~~~vr~al~~L~------~~~~~~~~~~~~l-------------- 1574 (2256)
.+...++.+...-. .|+++..+..-.. .+..|.....+-.+.|. ++........+.-
T Consensus 169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence 99988888775432 2344322211000 00001000001111110 0000000000000
Q ss_pred ---hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1575 ---ALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1575 ---~~i~p~L~~~L~d--~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
.-......+.+.. ....+|..+.+.+..|+..++ ....|+-++...+...+.++.+.++..+++++..+...
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~---~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~ 325 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS---MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTG 325 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHH
Confidence 0011111222221 123689999999999887653 23456667777888888899999999999999999887
Q ss_pred hCcCchH------HHHHHHHHHhhc---------CCCHHHHHHHHHHHHHHHHHhcH---hHHHHHHHHHHHhccC-CCH
Q 000098 1650 MGEENFP------DLVSWLLDALKS---------DNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSH-QRA 1710 (2256)
Q Consensus 1650 ~g~~~~~------~lip~Ll~~L~~---------~~~~~~R~~aa~~L~~i~~~~g~---~~l~~ll~~ll~~l~~-~~~ 1710 (2256)
++.++.+ .....+...+.. ..........+.+++.+...--. +..+...+.+...+.| .+.
T Consensus 326 lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~ 405 (728)
T KOG4535|consen 326 LIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNR 405 (728)
T ss_pred HhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHH
Confidence 7633221 122212222221 11111234444555544322110 0112344555555554 355
Q ss_pred HHHHHHHHHHHHhHhhhChh-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCH
Q 000098 1711 SVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789 (2256)
Q Consensus 1711 ~vR~~al~~l~~La~~~g~~-f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~ 1789 (2256)
-+|..++...+.+...-|-. -..+.......++..+.|..-++|..+..+++.|...+ ..++-
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL------------~~~~P---- 469 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL------------IVNMP---- 469 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH------------HcCCC----
Confidence 67888887776544333321 12455666677777777777778887777766654332 22221
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000098 1790 RIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869 (2256)
Q Consensus 1790 ~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~ 1869 (2256)
.+|....+..|.++.. .+..-..+..| ...|+..+...++
T Consensus 470 s~~s~~eR~sg~ll~~---------------------------------------~~~~A~~~~Ad-~dkV~~navraLg 509 (728)
T KOG4535|consen 470 TPDSFQERFSGLLLLK---------------------------------------MLRSAIEASAD-KDKVKSNAVRALG 509 (728)
T ss_pred CchHHHHHHHHHHHHH---------------------------------------HHHHHHHhhhh-hhhhhhHHHHHHh
Confidence 1222222333333211 00000000001 1236666666666
Q ss_pred HHHhcC----hhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhC-----ccchhchHHHHhhhcCCC-Chh
Q 000098 1870 TIVANT----PKTLKEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLG-----ERVLPSIIPILSRGLKDP-SAS 1938 (2256)
Q Consensus 1870 ~l~~~~----~~~l~~~l~~Ll~~L~~~L-~~~~~~~R~~A~~aL~~lv~~~~-----~~~l~~llp~L~~~l~d~-~~~ 1938 (2256)
.+..-. +..+.+++..-+..+..+. ...+..+|..++.++|.+++.-. .+..+.+++.|...+.+. +-.
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence 543322 1223333333222222111 12355788888889998887421 234567777777766544 556
Q ss_pred hHHhHHHHHH
Q 000098 1939 RRQGVCIGLS 1948 (2256)
Q Consensus 1939 vR~~a~~aL~ 1948 (2256)
+|..++.+|.
T Consensus 590 VRi~AA~aL~ 599 (728)
T KOG4535|consen 590 VRIRAAAALS 599 (728)
T ss_pred Eeehhhhhhc
Confidence 7777766654
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0028 Score=79.94 Aligned_cols=185 Identities=23% Similarity=0.288 Sum_probs=134.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
..+.+.+.+.++++.+|..+...++.+.. ...++.+...+.|.++.+|..+..++|.+. .+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------~~ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELG-------DP 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------Ch
Confidence 45667778888888999888877555542 236788999999999999999999777654 35
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCC------------HHHHHHHHHHHHHhH
Q 000098 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR------------ASVRDGYLTLFKYLP 1724 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~------------~~vR~~al~~l~~La 1724 (2256)
..+|.+...+..+.+..+|..++.+++.+-... .+..++..+++.. ..+|..+...++.+.
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~ 177 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG 177 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC
Confidence 677888888886778889999999888764322 1334455555433 246666666555432
Q ss_pred hhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1725 ~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
. +...+.+...+.++...||..+..++..+.... ..+.+.+...+.+++|.+|..++..+|.+
T Consensus 178 ----~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 178 ----D------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred ----C------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 1 234567788888988899999999888764432 23567778888999999999999888765
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.34 Score=63.61 Aligned_cols=122 Identities=12% Similarity=0.168 Sum_probs=91.8
Q ss_pred cHhhHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhh
Q 000098 2071 HLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD 2149 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~~-~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~ 2149 (2256)
.+...+|.+++.|+- ....+|....-+++++|.++. ...+..+|.+...++|+++-+|+.++..+..+.+.. +..
T Consensus 965 LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~---~vK 1040 (1529)
T KOG0413|consen 965 LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG---IVK 1040 (1529)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh---hhh
Confidence 345688999999864 457889999999999998652 235778999999999999999999999999998754 333
Q ss_pred hHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCc-hhchHHHH
Q 000098 2150 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV-QPSYIKVI 2196 (2256)
Q Consensus 2150 y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~-l~~lv~~l 2196 (2256)
+-..++-.++..+-|.++++|+-|-.+++.+.+.-.+.. +..|+..+
T Consensus 1041 w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1041 WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 334445455566678999999999999999886544332 33455444
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0034 Score=79.33 Aligned_cols=243 Identities=18% Similarity=0.075 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchH
Q 000098 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2256)
Q Consensus 1337 ~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~p 1416 (2256)
..++.++..|..+++..++..++.++...- ....+..+.+.+.+. +..+|.++..+++.+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~---------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~--------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE---------DALDLRSVLAVLQAG-PEGLCAGIQAALGWLG--------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC---------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC---------
Confidence 345555666655555666665555543111 112356666677665 5667777776665431
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1417 yv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
-....+.+...+.+.++.||..+..+++..- ..-.+.+...+.|.+..+|..|+.++|.+-.
T Consensus 115 -~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------- 176 (410)
T TIGR02270 115 -GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDPGPALEAALTHEDALVRAAALRALGELPR--------- 176 (410)
T ss_pred -chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---------
Confidence 1244556666778888889888776665421 1124566677778899999999999987653
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhh
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
...+|.|...+.|.++.||.+|..++..++. + .-++.+.....++....+..+....... . -..
T Consensus 177 -~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal~-----~---~~~ 240 (410)
T TIGR02270 177 -RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAVA-----G---GPD 240 (410)
T ss_pred -ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHhC-----C---chh
Confidence 2445567778999999999999999988764 2 1122333333344333322211111100 0 114
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
.++.+...+++.. +|..++.+++.+.. + ..++.|...+.|+. ++..|..++..|..
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg~----p--------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVGD----V--------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcCC----c--------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 6677777777754 88888888886643 2 25677777787754 88888888888764
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.22 Score=66.30 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=118.5
Q ss_pred ccCCChhHHHHHHH-HHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhh
Q 000098 1467 LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2256)
Q Consensus 1467 L~~~~w~~R~~a~~-~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~ 1545 (2256)
+.+.+.+.|..|+. .+..|..+- . ++.++|.+++.....+.++++-.--=|..+++.-+ ...--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--d----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--D----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--C----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 56666666766664 556665543 3 34555555555556678999888877777776532 2335567888999
Q ss_pred hCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhh-hhHH
Q 000098 1546 LTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2256)
Q Consensus 1546 l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~-Ll~~ 1623 (2256)
++||++.+|. |+..+.... ...-+..+++.+.+.+.|+++.||+.|+.++.++.+. ++.. |.+. +...
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l---~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDL---YHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhh---hhcccHHHH
Confidence 9999999984 777766421 1234567888999999999999999999999999874 3211 2222 5566
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1624 L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
+..++.|.+|.|-..|..++..+...
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77778899999999998888877654
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.49 Score=63.76 Aligned_cols=354 Identities=16% Similarity=0.175 Sum_probs=167.0
Q ss_pred HHHHHHHHHHhhcCchh-H--HhHHHHHHhhhCCCChhHH-HHHHHHHhccc-ccCCChhhHhhHHHHHHHhhcCCCHHH
Q 000098 1518 AGQTALQQVGSVIKNPE-I--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF-VNTVDAPSLALLVPIVHRGLRERSAET 1592 (2256)
Q Consensus 1518 aA~~aL~~l~~~i~~~~-i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~-~~~~~~~~l~~i~p~L~~~L~d~~~~v 1592 (2256)
.+...|.++++..+... + ..+++.|.+++...+.... .++..|.+.++ ....+.-.-..++|.+.+.+...+.+.
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 44555666665443221 1 4566666666665544332 12222222111 111111122346777788887777788
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhh--hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc-C--chHHHHHHHHHHhh
Q 000098 1593 KKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-E--NFPDLVSWLLDALK 1667 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l~~~~~l~~~--l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~-~--~~~~lip~Ll~~L~ 1667 (2256)
+..+..++.|++. ++ ++.+. -..++|.+..++.+++ .|..+...+..++..-.. . ...+++|.+++.+.
T Consensus 348 ~~~aLrlL~NLSf---d~-~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 348 VNVALRLLFNLSF---DP-ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HHHHHHHHHHhCc---CH-HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 8888888888774 21 22222 2357888888888754 455666666666542110 1 13468898888877
Q ss_pred cCCCHHHHHHHHHHHHHHHHHh--cHhHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh---hHHHHHHHHHHH
Q 000098 1668 SDNSNVERSGAAQGLSEVLAAL--GTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV---QFQNYLQQVLPA 1741 (2256)
Q Consensus 1668 ~~~~~~~R~~aa~~L~~i~~~~--g~~~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~---~f~~yl~~ilp~ 1741 (2256)
...+..+....+..+..++..- ..... .+.++.++........ ...+.++..++..-|+ .|.+|+..++
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~~~i~~L~-- 496 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFVDFIGDLA-- 496 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHHHHHHHHH--
Confidence 6444333222211111111000 00000 1122333333222111 2234456666665543 3444444433
Q ss_pred HHHhcCCC-CHHHHHHHHHHHHHHHHHh-hccch------hchHHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhcCCCc
Q 000098 1742 ILDGLADE-NESVRDAALGAGHVLVEHY-ATTSL------PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSG 1811 (2256)
Q Consensus 1742 Ll~~L~d~-~~~VR~~Al~al~~iv~~~-~~~~~------~~llp~L~~~l~d--~~~~iR~~sv~llg~ll~~~~g~~~ 1811 (2256)
..+... +++ ...++++.+.... .+..+ -.++|.+.+.+.. ....+..+++.++|.+..
T Consensus 497 --~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~------- 564 (708)
T PF05804_consen 497 --KIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS------- 564 (708)
T ss_pred --HHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-------
Confidence 333332 333 3344444332211 11111 1267777766643 233577788888887641
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHH--HHHHHH
Q 000098 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNT 1889 (2256)
Q Consensus 1812 ~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l--~~Ll~~ 1889 (2256)
++ ..+..+.....-..+-.++....+.+.-|-+. +-+|..+..+ +.+...++ ..+...
T Consensus 565 --------d~----------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQi-l~~f~~ll~h-~~tr~~ll~~~~~~~y 624 (708)
T PF05804_consen 565 --------DP----------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQI-LYVFYQLLFH-EETREVLLKETEIPAY 624 (708)
T ss_pred --------CH----------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHH-HHHHHHHHcC-hHHHHHHHhccchHHH
Confidence 00 01111111112223333444444433334333 3344444444 22222222 234555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH
Q 000098 1890 LISSLASSSSERRQVAGRALGELVR 1914 (2256)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~aL~~lv~ 1914 (2256)
++..+.+.|..+|..+-.||.-+.+
T Consensus 625 lidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 625 LIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6677788888888888888877665
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.03 Score=68.85 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhCcc-ch
Q 000098 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGER-VL 1921 (2256)
Q Consensus 1844 ~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~-~~~~R~~A~~aL~~lv~~~~~~-~l 1921 (2256)
.++..+.....|++..+|..|+..++..+..+|...+.+.+.+++.++..|-|+ +.++.-.+..+|..+.+..... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 344455555789999999999999999999999999999999999999887654 5788889999999888876543 33
Q ss_pred hchHH---HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH---HHHhcCCCHHHHHHHH
Q 000098 1922 PSIIP---ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI---RTALCDSILEVRESAG 1986 (2256)
Q Consensus 1922 ~~llp---~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l---~~~L~D~~~~VR~~A~ 1986 (2256)
+.+++ .+...+.+.++..|..+...++.+...+|+..-.-|.+++...+ .-.+.|+++.|-.+..
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 44444 35567778889999999999998888887653333333333222 2356788887755433
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.7 Score=61.04 Aligned_cols=271 Identities=16% Similarity=0.229 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCC-----hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh-h
Q 000098 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-L 1508 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~-L 1508 (2256)
.-|..-.+++-.....+++.-..-++..+-+.+.+.+ |..-.+.+..+..+++.........++.++...... +
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 3455555555555555553333555556666665544 887788888888888877665544444333322111 1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2256)
+-.++..-..+...++.++..+++. ++...+|.|...+..+.
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk------------------------------------ 562 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK------------------------------------ 562 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch------------------------------------
Confidence 2336666677777788877776542 34445555555443322
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhCcC----chHHHHH
Q 000098 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVS 1660 (2256)
Q Consensus 1587 d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip 1660 (2256)
.-..+...+..+|+ ..+.++.||.+.++......++. -....|...++++|.+.....++ |...++.
T Consensus 563 -----~s~q~i~tl~tlC~--~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 563 -----ESEQAISTLKTLCE--TCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred -----HHHHHHHHHHHHHH--hhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 11223334667776 35578899999999888888764 34668889999999998877633 4444444
Q ss_pred HHHHHhhc----C-CCHHHHHHHHHH---HHHHHHHhcHh-----------------------HHHHHHHHHHHhcc--C
Q 000098 1661 WLLDALKS----D-NSNVERSGAAQG---LSEVLAALGTV-----------------------YFEHILPDIIRNCS--H 1707 (2256)
Q Consensus 1661 ~Ll~~L~~----~-~~~~~R~~aa~~---L~~i~~~~g~~-----------------------~l~~ll~~ll~~l~--~ 1707 (2256)
.++..+.. + +....+...+-. ++.+...+..+ .+..++|.+-+.+. -
T Consensus 636 ~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~ 715 (982)
T KOG2022|consen 636 PILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL 715 (982)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 44444432 1 222223333322 33333222100 11233333332222 1
Q ss_pred CCHHHHHHHHHHHHHhHhhhChhH-HHHHHHHHHHHHHhcCC
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~~f-~~yl~~ilp~Ll~~L~d 1748 (2256)
....+-+++|..++.=-...++.| .|+++.+.+.+......
T Consensus 716 ~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~ 757 (982)
T KOG2022|consen 716 GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTS 757 (982)
T ss_pred cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccc
Confidence 355666776666665555666778 88999999988885443
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.50 E-value=1.9 Score=64.84 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=105.6
Q ss_pred HHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc--chhcHHHHHHHHHhhcCCC--ChhhHH
Q 000098 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI--DEEGVESLVSELLKGVGDN--QASIRR 2130 (2256)
Q Consensus 2055 ~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~--~~~~~~~ll~~Ll~~l~~~--~~~vR~ 2130 (2256)
..+..+...++..|..|++..++..+..+.......|.......+.+..-. .+.+.+...+.+++.+.+. ....|.
T Consensus 913 ~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~ 992 (2341)
T KOG0891|consen 913 SLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRK 992 (2341)
T ss_pred HHHHHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHh
Confidence 455666777788888899888888877774433444554444444444422 2356677788888888877 477899
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHh
Q 000098 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2131 ~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
.+...++.+.+ ..++..|...++..+++.+.-. .+++......++.+.+.+... +..++|.+...+.
T Consensus 993 ~~l~t~~~l~~--~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~-~~i~~p~~~~~~~ 1059 (2341)
T KOG0891|consen 993 SALITIGRLAQ--QVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKD-FAIFIPMVNKKLV 1059 (2341)
T ss_pred hHHHHHHHHHH--hhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCc-eeehHHHHHHHHh
Confidence 99999999887 5678889999999999988877 999999999999999988876 4455666554433
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.22 Score=64.17 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=92.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHH
Q 000098 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2256)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ 1700 (2256)
+..+..++...++.|+..|+.++-.+... +..+......+++.+..+.+..++.-...-+.++- ......++++.-.
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mD 321 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMD 321 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCC--HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHH
Confidence 34444555555555555544444333210 11111122223333333333334444444444443 3334467777778
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHhhccch
Q 000098 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-------ADENESVRDAALGAGHVLVEHYATTSL 1773 (2256)
Q Consensus 1701 ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L-------~d~~~~VR~~Al~al~~iv~~~~~~~~ 1773 (2256)
++..+..++-.||..++...-.+...- . +++++..+-.-+ .|++...|..-.+++....-+|.. ..
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssr--N----vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-~a 394 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSR--N----VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-VA 394 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhc--c----HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH-HH
Confidence 888899999999998877665555432 1 223333332222 233445677777777766555543 23
Q ss_pred hchHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1774 ~~llp~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
..++|.+.+.+.|.|...-...+..+.+.+
T Consensus 395 atvV~~ll~fisD~N~~aas~vl~FvrE~i 424 (948)
T KOG1058|consen 395 ATVVSLLLDFISDSNEAAASDVLMFVREAI 424 (948)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 447888888888888766655555555544
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.037 Score=68.15 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=105.0
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
+.+..++..+.+-..||+..+|..|+++|+..+...+.+ +.+.++..++..|.++.+..+...+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 445566666667778999999999999999999875543 45667777777787776677888888887776654432
Q ss_pred h----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHH-HHHHHH---HHHHHhcCCCCHHHHHHHHHHH
Q 000098 1692 V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVL---PAILDGLADENESVRDAALGAG 1761 (2256)
Q Consensus 1692 ~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~-yl~~il---p~Ll~~L~d~~~~VR~~Al~al 1761 (2256)
. ++-++.-.+.+...+.++.+|-+++.+||.++...|..-+. |.+++. .+++-.+.|+++.|-.+.-..+
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 2 44555556677778889999999999999999988865433 333333 3455567888887755443333
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00017 Score=63.94 Aligned_cols=55 Identities=31% Similarity=0.433 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Q 000098 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 2180 (2256)
Q Consensus 2126 ~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l 2180 (2256)
|.+|.+|+.+||.+++..+....+|.+.+++.|..++.|+++.||.+|++||+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999998888899999999999999999999999999999999864
|
... |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.38 E-value=1.2 Score=59.73 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=103.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
.+.+.+.+++. .+|.+.+.-.-.=+...++.-+ .-..-.++.+.+-++|+++.+|-.|..++..+- .+.-+.
T Consensus 55 sLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~---~~el~~ 126 (757)
T COG5096 55 SLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR---VKELLG 126 (757)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC---hHHHHH
Confidence 45566666666 4477777655443433333322 223446788899999999999999887776552 123347
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.+++++.+.+.|++..+|+.|+.+++.+....++..... +.+..+..++.|++|.|-.+|..+|..+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 889999999999999999999999999987766654332 2455567788999999999999999888765
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.2 Score=64.51 Aligned_cols=429 Identities=17% Similarity=0.210 Sum_probs=203.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchH--
Q 000098 1222 SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-- 1299 (2256)
Q Consensus 1222 ~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~-- 1299 (2256)
.+.+..++++++-.++.-....+-++ .+.-.-++.++--.|.. . +..++.--. .+-+++.....+-.-++
T Consensus 26 k~~Lek~~~~~KIeamK~ii~~mlnG-e~~p~Llm~IiRfvlps--~----~~elKKLly-~ywE~vPKt~~dgkl~~EM 97 (948)
T KOG1058|consen 26 KEKLEKGDDEVKIEAMKKIIALMLNG-EDLPSLLMTIIRFVLPS--R----NHELKKLLY-YYWELVPKTDSDGKLLHEM 97 (948)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHcC-CCchHHHHHHhheeecc--C----chHHHHHHH-HHHHHccccCCCcccHHHH
Confidence 45677788888877776655554433 22222223333323322 1 112333222 22233322222111111
Q ss_pred -HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-c-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchh
Q 000098 1300 -AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-E-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK 1376 (2256)
Q Consensus 1300 -~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~-~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~ 1376 (2256)
-+-...-..|++|++.+|-...+-|. .+++ . +..++|.....| ++...-||+.|..++..+.+... ..+
T Consensus 98 ILvcna~RkDLQHPNEyiRG~TLRFLc----kLkE~ELlepl~p~Iracl-eHrhsYVRrNAilaifsIyk~~~-~L~-- 169 (948)
T KOG1058|consen 98 ILVCNAYRKDLQHPNEYIRGSTLRFLC----KLKEPELLEPLMPSIRACL-EHRHSYVRRNAILAIFSIYKNFE-HLI-- 169 (948)
T ss_pred HHHHHHHhhhccCchHhhcchhhhhhh----hcCcHHHhhhhHHHHHHHH-hCcchhhhhhhheeehhHHhhhh-hhc--
Confidence 12233445788999999865443222 2221 1 223333333333 45567899999999999988631 122
Q ss_pred hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH
Q 000098 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456 (2256)
Q Consensus 1377 ~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v 1456 (2256)
++..+.+...+..+.|+.....|+..+-.. |+ +.|..-+.......+. +
T Consensus 170 pDapeLi~~fL~~e~DpsCkRNAFi~L~~~------------------------D~-----ErAl~Yl~~~idqi~~--~ 218 (948)
T KOG1058|consen 170 PDAPELIESFLLTEQDPSCKRNAFLMLFTT------------------------DP-----ERALNYLLSNIDQIPS--F 218 (948)
T ss_pred CChHHHHHHHHHhccCchhHHHHHHHHHhc------------------------CH-----HHHHHHHHhhHhhccC--c
Confidence 245556666666666766655554432211 11 1111111111111110 0
Q ss_pred HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH
Q 000098 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI 1535 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i 1535 (2256)
...+ ...-++.+...+...|..-. ..+..++.+|..+++.|+-.|+.+|..+.. +| .+
T Consensus 219 ~~~L--------------qlViVE~Irkv~~~~p~~~~----~~i~~i~~lL~stssaV~fEaa~tlv~lS~---~p~al 277 (948)
T KOG1058|consen 219 NDSL--------------QLVIVELIRKVCLANPAEKA----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSN---DPTAL 277 (948)
T ss_pred cHHH--------------HHHHHHHHHHHHhcCHHHhh----HHHHHHHHHHhcCCchhhhhhcceEEEccC---CHHHH
Confidence 0000 01123334444433333322 234455666776677777777666655542 23 23
Q ss_pred HhHHHHHHhhhCCCC-hhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1536 ASLVPTLLMGLTDPN-DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~-~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
+.-...++.++.+.+ ..+.- .++.|.... ......+..++-.+.+.+...+-++|+++..+.-.+... .+..++
T Consensus 278 k~Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss-rNvedi 353 (948)
T KOG1058|consen 278 KAAASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS-RNVEDI 353 (948)
T ss_pred HHHHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-ccHHHH
Confidence 333334444333221 11110 122222111 112334555666677888888899999998888777652 221222
Q ss_pred hhhhhhhhHHHHHh---hcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1614 IPYIGLLLPEVKKV---LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~---L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g 1690 (2256)
..++. ..+... -.|.+..-|..-.+++...+..++ ++-..++|.+++.+.+.++. --.....-+.++++.+.
T Consensus 354 v~~Lk---ke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-~~aatvV~~ll~fisD~N~~-aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 354 VQFLK---KEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-EVAATVVSLLLDFISDSNEA-AASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHH---HHHHhccccccccchHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHhCc
Confidence 22221 111111 124556678888888888887654 34567999999999874322 22222222334443332
Q ss_pred HhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhHhhhC
Q 000098 1691 TVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1691 ~~~l~~ll~~ll~~l~~-~~~~vR~~al~~l~~La~~~g 1728 (2256)
. ....++..++..+.. ....+-+++++.+|..+...+
T Consensus 429 ~-Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 429 N-LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred h-HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 1 112233333333221 234455677777777665543
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.015 Score=75.40 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=161.1
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q 000098 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2256)
Q Consensus 1928 L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2256)
....+.|+.+.+|.+....+..+++.-.+..+ -....++......+.|.++=|--.|..++..+++. +-++++|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----y~e~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----YPEDILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh----cchhhHHH
Confidence 33456677778888888888888874332222 23356888888899999988888888888888874 34557777
Q ss_pred HHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCC
Q 000098 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2256)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~ 2087 (2256)
+.+...+....-+ .+..+ ..-+|+..++...|+-+..|...++..++...++++
T Consensus 807 L~e~Y~s~k~k~~------------~d~~l--------------kVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQ------------TDYRL--------------KVGEAILKVAQALGELVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccCCC------------cccee--------------hHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCch
Confidence 6664443221100 00000 123567777777899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcc---hhcHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHhchhhhhh----hHHHHHHHHH
Q 000098 2088 MDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVD----EAPNMISTLI 2159 (2256)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l~-~~~~~vR~~A~~~l~~l~~~~~~~~~~----y~~~il~~L~ 2159 (2256)
...|......++.++.... .+.+..+...++...+ |..+-+|++|+..+..+...++.+..| |..+....+.
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 8899999999999998653 3566666666666654 667999999999999999999888777 4455555565
Q ss_pred HHc-CCCChHHHHHHHHHHHHhh
Q 000098 2160 VLL-SDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2160 ~~l-~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
... .++++.++-.|..|+-.+-
T Consensus 941 ~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHhcCchhHHHHHHHHHHHHHH
Confidence 544 4566778889998887764
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.052 Score=72.74 Aligned_cols=355 Identities=14% Similarity=0.163 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-hhH--HhHHHHHHHhccCCChhH
Q 000098 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGV--KLVLPSLLKGLEDKAWRT 1474 (2256)
Q Consensus 1398 ~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-~~v--~~ilp~Ll~~L~~~~w~~ 1474 (2256)
.++..+..+++...-...-.-..+++.+..++..++..+.-.+...+..+.-.-.. ..+ ..++|.+.+.+.+++-..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 34445555555443211222345778888888877888887777777776532211 122 468999999999888888
Q ss_pred HHHHHHHHHHHHhhCh--hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhhhC-C
Q 000098 1475 KQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLT-D 1548 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~p--~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~-d 1548 (2256)
+..++.+|..++.... .++.. .+++|.+..+|.|+ ..|..+...|.+++..=... .+ ...+|.+.+.+. .
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 9999999999887532 22222 26889999999875 45666777888877532111 11 345677666543 3
Q ss_pred CChhHH-HHHHHHHhcccccCCChh--hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHH
Q 000098 1549 PNDHTK-YSLDILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625 (2256)
Q Consensus 1549 ~~~~vr-~al~~L~~~~~~~~~~~~--~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~ 1625 (2256)
+++.+. +.+..+.+.........- .-..+-..+.+.++.+++- ....+.|++.. ++. ....+...+..+.
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h--~~~-~k~~f~~~i~~L~ 496 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQH--DGP-LKELFVDFIGDLA 496 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhc--Cch-HHHHHHHHHHHHH
Confidence 444433 233333221110000000 0011222333444444432 23467777763 211 1222222333333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhhCc--C---ch--HHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhcHh-HH--
Q 000098 1626 KVLVDPIPEVRSVAARAIGSLIRGMGE--E---NF--PDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-YF-- 1694 (2256)
Q Consensus 1626 ~~L~d~~~~VR~~a~~aL~~L~~~~g~--~---~~--~~lip~Ll~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~-~l-- 1694 (2256)
..+..++. .+....|+|.++.-.-+ + .+ ..++|++.+.|.... .......+...+|.++..-... .+
T Consensus 497 ~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~ 574 (708)
T PF05804_consen 497 KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK 574 (708)
T ss_pred HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 44443322 24667777777753212 2 12 258999999997642 2335555666666655321111 11
Q ss_pred HHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1695 EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
.++++.++..++.. +.+.--..+.+|..+... ++.....+ .++...++..+.|.++.||..+-.++..+..
T Consensus 575 sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 575 SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35677777776543 555555666667666544 22111111 3577889999999999999988888776654
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.19 Score=65.49 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=107.7
Q ss_pred hhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC--c--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1617 IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE--N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~--~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
.+.++|.|..++++ .++++...|++|+..+++.+++. . -...+|.|.+.|..-+-..+-..+.+++..+.+..++
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 56789999999986 47899999999999999998754 1 2348888888887644444666777788777777766
Q ss_pred hHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1692 VYFE-HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1692 ~~l~-~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
..++ .-+..++..+.=-.-.+...|+.....+|+.+..+--.|+-+.+|.|-..|+..+...-+.++-++..++..+..
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 6432 111111111111123455667777778888776543367778899999999888777777888888888877654
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.011 Score=71.98 Aligned_cols=160 Identities=19% Similarity=0.310 Sum_probs=122.5
Q ss_pred chhhHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhh
Q 000098 1839 RDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS-ERRQVAGRALGELVRKL 1916 (2256)
Q Consensus 1839 ~e~~~~vl~~L~~~~~D-~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~-~~R~~A~~aL~~lv~~~ 1916 (2256)
+++|.+++..++.+++| .+...|..|+.++..+..+-|..+.......+..+++.-.++.. .+|.++-.|+..+....
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 34677888889999988 67889999999999999999888877777766666666666655 45555555666666666
Q ss_pred CccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1917 GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2256)
Q Consensus 1917 ~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~ 1996 (2256)
+..-..-+.|.+.. .+...-..++..+.++++....+.+.+.++++.|.+.++.......||..|.+|+-.++..+
T Consensus 404 P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 404 PLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred chhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 65555555565554 22222234455888999999988898999999999999999999999999999999999999
Q ss_pred chhhHH
Q 000098 1997 GMQAID 2002 (2256)
Q Consensus 1997 g~~~~~ 2002 (2256)
|.+.+.
T Consensus 480 G~~~me 485 (516)
T KOG2956|consen 480 GMEEME 485 (516)
T ss_pred hHHhhh
Confidence 965544
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.39 Score=62.82 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~---~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
..-+.+|++.|..+.+......|..-|..++.-...+ .+.-..++|.|...+.++.+...--.|+.|+.++++.+++
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 3456678888877766677777776666655432222 2223368899999999998999999999999999999986
Q ss_pred CchHhHH-HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHhhhhHhhHH-hHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1413 LFEPYVI-QMLPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1413 ~~~pyv~-~llp~ll~~l-~D~~~~VR~aa~~al~~l~~~l~~~~v~-~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
...-.+. ..+|.++..+ .-+--+|.+.+.+|+..|.+.-+...++ .-+-..+.+++==+-...+.|+-....++...
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5444333 3677777654 3456688899999999887765543321 12223333332112234455666666666665
Q ss_pred hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000098 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1490 p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~ 1531 (2256)
+.+-..++-+.+|.|.++|...+..+-..++-++..+++.+.
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 544445566889999999999999999999999999988765
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.022 Score=69.91 Aligned_cols=185 Identities=25% Similarity=0.207 Sum_probs=130.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC--c---CchHH
Q 000098 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--E---ENFPD 1657 (2256)
Q Consensus 1583 ~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g--~---~~~~~ 1657 (2256)
..+.+++...|..+...+..+...---+..+..+...++..+...++.+..+-+..|+++++.++-.+| . +.+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 344667788888887777666542112233445566788888888887777777788999999998877 3 26788
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHh--cHhHHH---HHHHHHHHh--cc----------CCCHHHHHHHHHH
Q 000098 1658 LVSWLLDALKSDN-SNVERSGAAQGLSEVLAAL--GTVYFE---HILPDIIRN--CS----------HQRASVRDGYLTL 1719 (2256)
Q Consensus 1658 lip~Ll~~L~~~~-~~~~R~~aa~~L~~i~~~~--g~~~l~---~ll~~ll~~--l~----------~~~~~vR~~al~~ 1719 (2256)
+.|.|...+.+.. ....|..++.+|+-+.-.. +.+... ..|..+... .+ .+++.+..+++.+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 9999988888754 3456777777776654433 333333 344422221 11 1246799999999
Q ss_pred HHHhHhhhCh-hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000098 1720 FKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2256)
Q Consensus 1720 l~~La~~~g~-~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~ 1767 (2256)
|+.+....+. .+..++...+|.+...|..++.+||.+|-+++..+.+.
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999988876 46677888999999999999999999999998877654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=66.30 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhHH-hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v~-~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
++|.++..+.+.+..+|..+..++..++...+. ..++ .++|.+.+.+.+++.+++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 567777888888999999999999999865332 2233 789999999999999999999999999998765443332
Q ss_pred h-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1497 L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
. .++++.+.+.+.+.+.++|..++++|.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 358999999999999999999999999886
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.069 Score=69.63 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=102.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHH
Q 000098 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2256)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2256)
.......+.|+.+.+|..+...+..+.+.-... .-..++...++.+++++++ +-..+..++..++....++.++.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy-vyLnaI~gv~~Lcevy~e~il~dL 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY-VYLNAIRGVVSLCEVYPEDILPDL 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce-eeHHHHHHHHHHHHhcchhhHHHH
Confidence 344455667889999999999999988843221 3356888888999987666 677788888888877655544433
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1698 l~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
.......-.......|.-+-.++..+....|+-+..|.+.++..++.+..|++...|..++..++.+++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 332222222222233333448999999999999999999999999999998877777777777666554
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.017 Score=70.97 Aligned_cols=245 Identities=16% Similarity=0.172 Sum_probs=148.0
Q ss_pred hhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHH
Q 000098 1275 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~v 1354 (2256)
.+.-+++.-+|-++ +...+ .++.+.+-+.+.+.+...-+++.-..+-+ .++....+.+..+++--.+.+...+
T Consensus 426 ~l~yG~~LGiGL~~--MgSan---~eiye~lKe~l~nD~a~~geAa~~gMGl~--mLgt~s~eai~dm~tya~ETqhe~i 498 (926)
T COG5116 426 ELAYGVCLGIGLIN--MGSAN---REIYEKLKELLKNDRALLGEAAVYGMGLL--MLGTWSVEAIEDMRTYAGETQHERI 498 (926)
T ss_pred HHHHHHHhhhcchh--ccccc---HHHHHHHHHHHhcchhhhhhhhhhcccee--eecCCCHHHHHHHHHHhcchhhhhH
Confidence 44455554444332 22223 55667776666554433222222111111 1233446677777766554445566
Q ss_pred HHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHH-HcCCCc
Q 000098 1355 RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV-AFSDQV 1433 (2256)
Q Consensus 1355 R~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~-~l~D~~ 1433 (2256)
.|+-+.+++.++-+.. ...-..+.+.+.++ ++..|-+++++++.---+.|. . .++..++. ..+|.+
T Consensus 499 ~Rglgig~aLi~ygrq------e~add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn--~----~vv~~lLh~avsD~n 565 (926)
T COG5116 499 KRGLGIGFALILYGRQ------EMADDYINELLYDK-DSILRYNGVFSLALAYVGTGN--L----GVVSTLLHYAVSDGN 565 (926)
T ss_pred HhhhhhhhhHhhhhhH------HHHHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc--c----hhHhhhheeecccCc
Confidence 7777777776664431 11222444444444 788888887766544333332 2 23333444 378999
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCC
Q 000098 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH 1512 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~ 1512 (2256)
++||.+|..|++-++-.- ...++..++.|. +.+..+|.+...+||-.+.+.+.+. .+..|-.+..|+.
T Consensus 566 DDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~ 634 (926)
T COG5116 566 DDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTN 634 (926)
T ss_pred hHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcH
Confidence 999999999988765221 345666677766 5789999999999998776655442 2334555788999
Q ss_pred HHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhhhCCCC
Q 000098 1513 PKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~i~---~~~i~~lv~~Ll~~l~d~~ 1550 (2256)
.-||+.|+-+++-+..... +|.+..+...+.+.+.|..
T Consensus 635 dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 635 DFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 9999999999998876654 2455666666766666554
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=2.1 Score=55.16 Aligned_cols=283 Identities=14% Similarity=0.121 Sum_probs=166.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHH
Q 000098 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1302 (2256)
Q Consensus 1223 ~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il 1302 (2256)
.-+..+|+....-|+.|.. ..+|.+..+.+-+-+.++|-. ++ ..+.||+.+..++-.|-+..+.- -......
T Consensus 118 nDL~srn~~fv~LAL~~I~---niG~re~~ea~~~DI~KlLvS--~~--~~~~vkqkaALclL~L~r~spDl-~~~~~W~ 189 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIA---NIGSREMAEAFADDIPKLLVS--GS--SMDYVKQKAALCLLRLFRKSPDL-VNPGEWA 189 (938)
T ss_pred hhhhcCCcHHHHHHHHHHH---hhccHhHHHHhhhhhHHHHhC--Cc--chHHHHHHHHHHHHHHHhcCccc-cChhhHH
Confidence 4555677776666666543 234445555555556666654 22 23478988877777776653221 1123456
Q ss_pred HHHHHHcCCCCHHHHHHHH---------------HhhHHhHH-------hhcCch----------H---HHHHHHHHHHh
Q 000098 1303 DKLLDVLNTPSEAVQRAVS---------------SCLSPLMQ-------SMQDEA----------P---TLVSRLLDQLM 1347 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~---------------~~L~~lv~-------~~~~~~----------~---~~l~~Ll~~L~ 1347 (2256)
.+++..|.|.+-.|--++. .|++..+. ..+.+. + --+-++++...
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p 269 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP 269 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence 6777667665422211111 12222221 111111 1 11223444444
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~ 1427 (2256)
..+|..+|..-..++.+++.......-. ..+. ......+.++-.-.++-.++. -...+.+.+..+-+
T Consensus 270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~-k~vq-----------~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 270 TPEDPSTRARLNEVLERILNKAQEPPKS-KKVQ-----------HSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQ 336 (938)
T ss_pred CCCCchHHHHHHHHHHHHHhccccCccc-cchH-----------hhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHH
Confidence 4456777777777777777654311100 0010 111222333332333333332 12345667778888
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhhhhH-hhHHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000098 1428 AFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2256)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~l~~~l~~-~~v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~ 1505 (2256)
.+.+.+.++|.-|.+.+..++..-.. +.+++....++..+. +.+-.+|+-|+++|-.|+... .-..|+..++
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~------Nak~IV~elL 410 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS------NAKQIVAELL 410 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh------hHHHHHHHHH
Confidence 88999999999999988887665333 456777888888998 889999999999999988643 3357888889
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
+++...++.+|+...--..-+++.+..
T Consensus 411 qYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 411 QYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 999888899998877777777776654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.003 Score=66.18 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=85.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch---hcHH-HHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhh
Q 000098 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVE-SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE 2150 (2256)
Q Consensus 2075 Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~---~~~~-~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y 2150 (2256)
++|.+++.+.+.+..+|..+..++..++...++ ...+ .+++.+.+.+.++++.+|..++.+++.++...+.....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 677888888888899999999999999875322 2222 567888888889999999999999999988654332222
Q ss_pred H-HHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q 000098 2151 A-PNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2256)
Q Consensus 2151 ~-~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~ 2181 (2256)
. ..+++.+...+++.+..+++.|.++|+.++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 347899999999999999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.046 Score=67.07 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=134.5
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhh--ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC--c---
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N--- 1532 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~--~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~--~--- 1532 (2256)
|...++.+.++.-.+|..++..+..+... .++.+......+++.+...++-...+-+..|+++++-++-.++ .
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34445556667777888888777766643 4566777778899999999987666677788888888877655 2
Q ss_pred hhHHhHHHHHHhhhCCCChh--HH-HHHHHHHhcccccCCChhhHhhHHHHHH---Hh--hc----------CCCHHHHH
Q 000098 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKK 1594 (2256)
Q Consensus 1533 ~~i~~lv~~Ll~~l~d~~~~--vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~---~~--L~----------d~~~~vR~ 1594 (2256)
..+..+.|.|.+.+.|.... +| .|+.+|+-..|+...+......++..+. .. .+ ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 24588999999999988653 44 4666776666765544444432223322 11 11 12356888
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2256)
Q Consensus 1595 ~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g 1651 (2256)
.|...++-+...+ +...+..++...+|.|..+|..++..||.+|..+|+.+.+...
T Consensus 205 aAL~aW~lLlt~~-~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTL-PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 8888888888754 3234566778889999999999999999999999999988654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=62.83 Aligned_cols=86 Identities=33% Similarity=0.434 Sum_probs=69.6
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHH
Q 000098 2076 LPALLSAM-GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2256)
Q Consensus 2076 lp~Ll~~l-~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~i 2154 (2256)
+|.|++.+ +++++.+|..+..+++.+- -...++.|...++|+++.+|..|+.++|.+-. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 57788888 8889999999988888442 34778888888899999999999999998742 445
Q ss_pred HHHHHHHcCC-CChHHHHHHHHHHH
Q 000098 2155 ISTLIVLLSD-SDSTTVAAAWEALS 2178 (2256)
Q Consensus 2155 l~~L~~~l~D-~d~~Vr~~A~~aL~ 2178 (2256)
++.|...+.| ++..||..|..+||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7777887765 56678999999986
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=1.5 Score=57.36 Aligned_cols=409 Identities=15% Similarity=0.175 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHhccCchHhHHHHHHHHHHHcC
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALL-AFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~-al~~L~~~l~~~~~pyv~~llp~ll~~l~ 1430 (2256)
...|-.|..+|..+..+- . -+.+-.++.+++-+. ++.++..|+. ++..+... ..-+......+.....
T Consensus 114 d~yr~~AiR~L~~I~d~~---m--~~~iery~kqaivd~-~~avSsaalvss~hll~~~-----~~~vkrw~neiqea~~ 182 (865)
T KOG1078|consen 114 DLYRAAAIRALCSIIDGT---M--LQAIERYMKQAIVDK-NPAVSSAALVSSYHLLPIS-----FDVVKRWANEVQEAVN 182 (865)
T ss_pred cchhHHHHHHHHhhcCcc---h--hHHHHHHHHhHeecc-ccccchHHHHHHhhhhccc-----HHHHHHHHHhhhhccC
Confidence 445555555555554432 1 235566677777665 4444444322 11111110 1111112222222333
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC
Q 000098 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510 (2256)
Q Consensus 1431 D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D 1510 (2256)
+.+.-++..+..-+..+-++ ....+..++..+..+..+.-.+-+..+...+....+. ......+.+.+-.++.+
T Consensus 183 s~~~m~QyHalglLyqirk~-----drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~-~~~~s~~~~fl~s~l~~ 256 (865)
T KOG1078|consen 183 SDNIMVQYHALGLLYQIRKN-----DRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN-QQADSPLFPFLESCLRH 256 (865)
T ss_pred cHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc-ccchhhHHHHHHHHHhc
Confidence 33344444444333333221 1122333334343344444444455554444433222 33345677778888999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCC
Q 000098 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589 (2256)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~ 1589 (2256)
.+..|-..|+.++..+..... ..+..-+..|...++.|....| .|+..|.+....+... ....-+.+..+..|.+
T Consensus 257 K~emV~~EaArai~~l~~~~~-r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---v~~cN~elE~lItd~N 332 (865)
T KOG1078|consen 257 KSEMVIYEAARAIVSLPNTNS-RELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---VTVCNLDLESLITDSN 332 (865)
T ss_pred hhHHHHHHHHHHHhhccccCH-hhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---ccccchhHHhhhcccc
Confidence 999999999999887764332 2344456667777777776667 3555555422221100 0001122334444432
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcC
Q 000098 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2256)
Q Consensus 1590 ~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~ 1669 (2256)
|--+.-++..+.+. +... -.+.+|..+-..+.|-+-+-+-.+..++.+++..++.. ...+++.|.+.|.++
T Consensus 333 ---rsIat~AITtLLKT-G~e~----sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k-~~~~m~FL~~~Lr~e 403 (865)
T KOG1078|consen 333 ---RSIATLAITTLLKT-GTES----SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK-HTVMMNFLSNMLREE 403 (865)
T ss_pred ---cchhHHHHHHHHHh-cchh----HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH-HHHHHHHHHHHHHhc
Confidence 33344556666653 2212 23344444444444333333334455555565544322 345677777777776
Q ss_pred CCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHHHHHHHHHHHHHH
Q 000098 1670 NSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILD 1744 (2256)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~~yl~~ilp~Ll~ 1744 (2256)
....-+.....++..++...... .+..+...+ ..+....-.+| .+..+..-.+. .-..|+.. +.+
T Consensus 404 Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI-EDce~~~i~~r-----ILhlLG~EgP~a~~Pskyir~----iyN 473 (865)
T KOG1078|consen 404 GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI-EDCEFTQIAVR-----ILHLLGKEGPKAPNPSKYIRF----IYN 473 (865)
T ss_pred cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH-HhccchHHHHH-----HHHHHhccCCCCCCcchhhHH----Hhh
Confidence 66666666777777776644322 122222222 11111122222 22222221111 11124333 233
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhcc-chhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1745 GLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~iv~~~~~~-~~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
..-=++..||.+|..++..+. .+.. ..+.+.-.+.+++.|.+..+|..+--++..+
T Consensus 474 RviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 474 RVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred hhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 333345678888887777664 2222 2344556667777777777776655444443
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.052 Score=69.87 Aligned_cols=143 Identities=21% Similarity=0.207 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC
Q 000098 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP 1935 (2256)
Q Consensus 1859 ~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~ 1935 (2256)
.|..++..++..+ ...|+.+.|++..||+.+. .+.+...+..++.+++.++..+..+ ..++|+..|..++..+
T Consensus 291 ~V~Aa~A~A~v~l-~~lP~KLnPiIrpLMdSIK---~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D 366 (441)
T PF12054_consen 291 RVLAAAASALVAL-GGLPKKLNPIIRPLMDSIK---REENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVD 366 (441)
T ss_pred HHHHHHHHHHHHh-ccCCCCccHHHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccC
Confidence 4555555555443 4578899999999999997 6788999999999999999987643 5789999998887532
Q ss_pred -C--hhhHHhHH--HHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHH
Q 000098 1936 -S--ASRRQGVC--IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLH 2010 (2256)
Q Consensus 1936 -~--~~vR~~a~--~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~ 2010 (2256)
. |..-.... .++-.+...-... ...+ .. -...-...-.-.|..|..+|..+.+.+|...++. +|.|++
T Consensus 367 ~seTP~~~~~~~~~~gILsl~k~~~~~---~~~~-~~--~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~-lP~Lw~ 439 (441)
T PF12054_consen 367 TSETPEFSHNVDKKDGILSLRKEEDKA---DHAD-AA--SEEREQKEARIQRRGAELALEQLAKRFGSSLFEK-LPKLWE 439 (441)
T ss_pred cccCCCCCCCcchhhcccchhhhcccc---cccc-cc--cchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHh-hhHHHh
Confidence 1 22110000 0000010000000 0000 00 0000001112347889999999999999988875 698887
Q ss_pred hh
Q 000098 2011 AL 2012 (2256)
Q Consensus 2011 ~L 2012 (2256)
.+
T Consensus 440 ~m 441 (441)
T PF12054_consen 440 CM 441 (441)
T ss_pred hC
Confidence 53
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0037 Score=61.53 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1578 ~p~L~~~L-~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
+|.+.+.+ +++++.+|..++.+++.+.. +..++.+...++|+++.||..++.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35666666 78899999998888773322 2568888899999999999999999998752 5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~~~~~R~~aa~~L~ 1683 (2256)
..++.|.+.+.++++..+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 688888888888777777888887775
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.91 E-value=4.7 Score=57.66 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=141.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~ 1457 (2256)
.++..+...+-... ...+.+|...-..+.+.+++..++++...+...+..-......++..--+.+-.+. .+.+..+-
T Consensus 181 e~L~~ll~~lv~~~-~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~ 258 (1266)
T KOG1525|consen 181 ELLDVLLENLVKPG-RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLL 258 (1266)
T ss_pred HHHHHHHHHhccCC-CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHH
Confidence 44555544443221 22233333333444555555556665554443332111111122222222222221 12233446
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-H
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-A 1536 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~ 1536 (2256)
.++|.|...|..++-.+|..|+.++|.|...-..++...++.++...+..+.|.++.||.++.+...++.-. +|.+ .
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--Cchhhh
Confidence 678888888999999999999999999988766677777889999999999999999999999998887643 4544 2
Q ss_pred h--HHHHHHhhhCCCChhHHHHHHHHHh-cccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh-c----C
Q 000098 1537 S--LVPTLLMGLTDPNDHTKYSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----T 1608 (2256)
Q Consensus 1537 ~--lv~~Ll~~l~d~~~~vr~al~~L~~-~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~-l----~ 1608 (2256)
. +.-.+.....|++..+|. ..++. +.+. ...-...+.++..+...+.|+.+.||..|..-+..+.+. + .
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~--~v~i~~~~v~-~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~ 413 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRT--QVVIVACDVM-KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSA 413 (1266)
T ss_pred HHHHHHHHHhhcCChhhhhee--eEEEEEeehh-HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 222333344455444431 00000 0000 000011122566677788899999999999888877762 1 1
Q ss_pred CCCcchhhhhhhhHHHHHhhcCCCHHHH
Q 000098 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2256)
Q Consensus 1609 ~~~~l~~~l~~Ll~~L~~~L~d~~~~VR 1636 (2256)
+.+.+.+-...+-..+..++-..+.+.|
T Consensus 414 ~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 414 GGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred CcccccccccccchhHHhhHhhccccHH
Confidence 2233334444444555666555545555
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0069 Score=68.36 Aligned_cols=113 Identities=25% Similarity=0.317 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCC
Q 000098 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2256)
Q Consensus 1898 ~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~ 1977 (2256)
++.+|..+.-++|+++...+ ..++..+|.+...+.|+++.+|..++..+..++.. + +...-+.++..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d---~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D---MIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C---ceeehhhhhHHHHHHHcCC
Confidence 46789999999999998765 45677788899999999999999999999988753 1 1122355667777889999
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1978 ~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
+++||..|...|..+...-++..+.+.+|.++..|.+.
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 99999999999999998766777777888888777664
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.023 Score=69.79 Aligned_cols=284 Identities=18% Similarity=0.211 Sum_probs=162.6
Q ss_pred HHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhh
Q 000098 1196 GIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1196 ~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
|+.-++..+-.-|+.+..+++.+++. -.+|....+-.-.+-.+..++..+ .. -.++...+-+++.. +. ..
T Consensus 392 GalyalGLI~Agfgr~~TeYL~e~~~--~teDe~~~~l~yG~~LGiGL~~Mg-Sa-n~eiye~lKe~l~n-D~-----a~ 461 (926)
T COG5116 392 GALYALGLIKAGFGREDTEYLLEYFL--DTEDELTPELAYGVCLGIGLINMG-SA-NREIYEKLKELLKN-DR-----AL 461 (926)
T ss_pred ceeeeehhhccCcCcccHHHHHHHhC--cccccccHHHHHHHHhhhcchhcc-cc-cHHHHHHHHHHHhc-ch-----hh
Confidence 44556665555577666666654441 233433333333333333333322 11 12344445455443 11 12
Q ss_pred hhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHc-CCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHH
Q 000098 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL-NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L-~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~v 1354 (2256)
.-++++..+|-+. +.... ...++.|...- .+..+.+.+...-.+.-+++..++.+ ..++..|..+.+.-.
T Consensus 462 ~geAa~~gMGl~m--Lgt~s---~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~a----dd~I~ell~d~ds~l 532 (926)
T COG5116 462 LGEAAVYGMGLLM--LGTWS---VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMA----DDYINELLYDKDSIL 532 (926)
T ss_pred hhhhhhhccceee--ecCCC---HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHH----HHHHHHHhcCchHHh
Confidence 3345555554332 11111 22344444322 23334455544444444444333333 345556667778889
Q ss_pred HHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC-Cc
Q 000098 1355 RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD-QV 1433 (2256)
Q Consensus 1355 R~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D-~~ 1433 (2256)
|-+.+.+++.-..+.|.. .++..+....-++.|..+|.+|+.+++.+|-.-. ..++..++.+.+ .+
T Consensus 533 Ry~G~fs~alAy~GTgn~-----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN 599 (926)
T COG5116 533 RYNGVFSLALAYVGTGNL-----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHN 599 (926)
T ss_pred hhccHHHHHHHHhcCCcc-----hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccc
Confidence 998888888766665532 3555555553333477889999998887764322 234444444444 58
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCH
Q 000098 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~ 1513 (2256)
+.||-..+-+++..+...+.. .-+..+-..+.|..-.+|++|+-+++.+.-.+.+++.+....|...+..+..|.|.
T Consensus 600 ~hVR~g~AvaLGiacag~G~~---~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 600 FHVRAGVAVALGIACAGTGDK---VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred hhhhhhhHHHhhhhhcCCccH---HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 899998888888776544432 22233333345778889999999999999888888888889999999999988875
Q ss_pred H
Q 000098 1514 K 1514 (2256)
Q Consensus 1514 ~ 1514 (2256)
+
T Consensus 677 ~ 677 (926)
T COG5116 677 S 677 (926)
T ss_pred h
Confidence 4
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.038 Score=65.44 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=54.9
Q ss_pred HHHHHHhcc-CCChhHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hHH
Q 000098 1460 LPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIA 1536 (2256)
Q Consensus 1460 lp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~-~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i~ 1536 (2256)
+..++..|+ ..++..+..++.+++..+..... .+... -..++.+...+.++++.||..|.+++.+++....+. .++
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 344555555 35666666677777766543222 22222 266788899999999999999999999998665443 345
Q ss_pred hHHHHHHh
Q 000098 1537 SLVPTLLM 1544 (2256)
Q Consensus 1537 ~lv~~Ll~ 1544 (2256)
..++.+++
T Consensus 93 ~~i~~Vc~ 100 (254)
T PF04826_consen 93 MYIPQVCE 100 (254)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=3 Score=53.89 Aligned_cols=422 Identities=16% Similarity=0.143 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHhccCchHhHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHhhhhHh------hHHhHHHHHHHhcc-
Q 000098 1398 GALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLKGLE- 1468 (2256)
Q Consensus 1398 ~al~al~~L~~~l~~~~~pyv~-~llp~ll~~l~D~~-~~VR~aa~~al~~l~~~l~~~------~v~~ilp~Ll~~L~- 1468 (2256)
+....++.++.+..+.+...+. ..++.++..+.+++ ..+++++..+++.+....+.. .-+.+++.+...+.
T Consensus 72 ~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~ 151 (678)
T KOG1293|consen 72 GFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI 151 (678)
T ss_pred hHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh
Confidence 4444555655555444555544 35788899999988 899999999999987654321 12455655544444
Q ss_pred CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCC
Q 000098 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTD 1548 (2256)
Q Consensus 1469 ~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d 1548 (2256)
+.....+..+ ......+..-.++..-+-..+...+.-++...+..+|.+|..++.+-+..+.++....+ .++..+.|
T Consensus 152 ~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm--~~l~~L~d 228 (678)
T KOG1293|consen 152 ELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSM--FLLGLLKD 228 (678)
T ss_pred hhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHH--HHHHHHhc
Confidence 2222222211 11111111111121111123333333344445788999999888864444443321100 01111111
Q ss_pred CChhHHHHHHHHHhcccccCCChhhHhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-------hhhh
Q 000098 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-------YIGL 1619 (2256)
Q Consensus 1549 ~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p--~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-------~l~~ 1619 (2256)
.. +.+ .+.+.++++....|..++..+..++.. +..++-.+ ..+.
T Consensus 229 ~~--------------------------v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~~~dmgd~ 281 (678)
T KOG1293|consen 229 KG--------------------------VNIRCVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFIFFDMGDS 281 (678)
T ss_pred cc--------------------------cchhhhhhhhhhCCCccHHHHHHHHHHHHHhc-cccccccccceeeccCchH
Confidence 11 111 234455566666666677777776653 21111111 1111
Q ss_pred hhH--HHHHhhcCCCHHHHHHHHHHH---HHHHHhhCcC-c---hHHHHHHHHHHhhc--CCCHHHHHHHHHH---HHHH
Q 000098 1620 LLP--EVKKVLVDPIPEVRSVAARAI---GSLIRGMGEE-N---FPDLVSWLLDALKS--DNSNVERSGAAQG---LSEV 1685 (2256)
Q Consensus 1620 Ll~--~L~~~L~d~~~~VR~~a~~aL---~~L~~~~g~~-~---~~~lip~Ll~~L~~--~~~~~~R~~aa~~---L~~i 1685 (2256)
.+- .....++||-+..-..+.... ..++...... + .....+.++....+ ......|.-++.. +...
T Consensus 282 ~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~ 361 (678)
T KOG1293|consen 282 LIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHL 361 (678)
T ss_pred HHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhh
Confidence 111 122234455443222222211 1133322211 1 11222222222211 0111122222211 1222
Q ss_pred HHHhcHhHHHHH-----HHHHHHhccCCCHHHHHHHHHHHHHhHhhhC---hhHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000098 1686 LAALGTVYFEHI-----LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADENESVRDAA 1757 (2256)
Q Consensus 1686 ~~~~g~~~l~~l-----l~~ll~~l~~~~~~vR~~al~~l~~La~~~g---~~f~~yl~~ilp~Ll~~L~d~~~~VR~~A 1757 (2256)
....|...-+++ +..+.......+..++.+++.++-.++.... ..+ --..++.++++.+.|++-.|...+
T Consensus 362 ~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~--~~~dv~~plvqll~dp~~~i~~~~ 439 (678)
T KOG1293|consen 362 EYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL--KRNDVAQPLVQLLMDPEIMIMGIT 439 (678)
T ss_pred hhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC--ccchhHHHHHHHhhCcchhHHHHH
Confidence 222222211222 2222222334577788888888876665432 222 234678888899999999999999
Q ss_pred HHHHHHHHHHhhcc---ch-hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHH
Q 000098 1758 LGAGHVLVEHYATT---SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2256)
Q Consensus 1758 l~al~~iv~~~~~~---~~-~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l 1833 (2256)
+.++..+|-.|++- -+ .-.+..++....+....+|..++..+.++.|.. |+. .....
T Consensus 440 lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~-----~k~~~ 500 (678)
T KOG1293|consen 440 LGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE-----EKFQL 500 (678)
T ss_pred HHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH-----HHHHH
Confidence 99999988776642 11 236677888888999999999999999887631 110 00111
Q ss_pred HHHhcchhhHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHhcChhH
Q 000098 1834 IEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2256)
Q Consensus 1834 ~~~Lg~e~~~~vl~-~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~ 1878 (2256)
. .++-. .+....+|+.+.|.+.+...+..+.-+....
T Consensus 501 ~--------~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 501 L--------AKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred H--------HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 1 11222 2333468999999999999999887765443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.094 Score=59.92 Aligned_cols=237 Identities=18% Similarity=0.197 Sum_probs=134.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHh
Q 000098 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2256)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~ 1964 (2256)
+..+.+...+.+....-..+.+||+... .+-+|.+...+.|. .|-+|..+..+|+.+. .+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~-----------~~ 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-----------DP 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-----------ch
Confidence 3334444445444555556666665543 45566666666654 4778888888887653 13
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc--hHHHHHHHHHHHhhhcccchhhhhh
Q 000098 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILP 2042 (2256)
Q Consensus 1965 ~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~~lp~li~ 2042 (2256)
.+.+.+.+...|+-..||+....|+..+-...+.....+..|+.- .++.- ....+..++..+-......+
T Consensus 100 ~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S---vdPa~p~~~ssv~~lr~~lld~t~~l~----- 171 (289)
T KOG0567|consen 100 ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS---VDPAPPANLSSVHELRAELLDETKPLF----- 171 (289)
T ss_pred hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc---CCCCCccccccHHHHHHHHHhcchhHH-----
Confidence 356666777788888888877666666643222111111111100 00000 00011112111110000000
Q ss_pred hhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcC
Q 000098 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVG 2122 (2256)
Q Consensus 2043 ~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~ 2122 (2256)
...+++-+|-. .|. ..-+.++...+.++..-.|..+.-+++.+-. +.-+|.|.+.|.
T Consensus 172 ---------~Ry~amF~LRn-~g~------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 172 ---------ERYRAMFYLRN-IGT------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLL 228 (289)
T ss_pred ---------HHHhhhhHhhc-cCc------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHH
Confidence 11122222111 111 3456677778887877789999888888765 233444444443
Q ss_pred C--CChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc
Q 000098 2123 D--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2123 ~--~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
+ +++.+|-.|+++||.++. ++.+..|...++|+++-||+.+.-+|.-.-.
T Consensus 229 d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3 458999999999999976 3457778888999999999999888876543
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=6.8 Score=56.52 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhccC
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRL 1413 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~--~~~~~Re~al~al~~L~~~l~~~ 1413 (2256)
.+....+...+.....+.+|+-.+.+++.+... |+ .+..+..+......+.|. +++....++..+++.+-+..|+.
T Consensus 50 ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd-~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~ 127 (2067)
T KOG1822|consen 50 LKLEQQLISRLTNGAGPPTRKLISVAIARLISN-GD-SFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRM 127 (2067)
T ss_pred HHHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cc-hhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHh
Confidence 345566777777777899999999999999987 43 333345555555556554 45666667788888888888876
Q ss_pred chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH----h-hHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhh
Q 000098 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----Q-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~----~-~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~ 1488 (2256)
...-....+..+.+..+..+..+|.....++......++. + ..+.+.-.....+.+.+..+|.++..++.++...
T Consensus 128 ~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 128 IGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 5555666677777777767777777776666665555542 1 1245555555666777778999999998888876
Q ss_pred ChhhH-hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1489 APQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1489 ~p~~l-~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
.+..+ ...+...-...+....+.+.+||-+-+++++.+....
T Consensus 208 ~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 208 GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 54443 3444555555666778889999999999999988765
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.042 Score=62.08 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCCh
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~ 1937 (2256)
+.||..++.+++.++...|..+.+++|.+... |.|+++.+|..|..+|..++..--..+-+.++..+...+.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~----L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKC----LRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 46899999999999988888777777777654 58999999999999999998753333455665666677889999
Q ss_pred hhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH
Q 000098 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l 1970 (2256)
.+|..+...+.++....++..+..++.+++..+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999987755554544444444433
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.22 Score=57.79 Aligned_cols=258 Identities=17% Similarity=0.209 Sum_probs=149.1
Q ss_pred CHHHHHH---HHHHHHHHHHhh-CccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH----hhHHHH
Q 000098 1898 SSERRQV---AGRALGELVRKL-GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPT 1969 (2256)
Q Consensus 1898 ~~~~R~~---A~~aL~~lv~~~-~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l----~~li~~ 1969 (2256)
|+..|+. ...||..+.+.. |....+.+.|.|..++..++..++.-+|..++.+++.|....+...+ ..+++.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 3444554 556666666643 44567899999999999888999999999999999999865443322 468888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhcc-CCchHHHHHHHHHHHhhhcccchhhhhhhhhcCc
Q 000098 1970 IRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2256)
Q Consensus 1970 l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~-~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p 2048 (2256)
+..++..++.+|-.+|.+++..+... |.-++.+-. +......+..|.. +.+.
T Consensus 133 ildcIggeddeVAkAAiesikrialf----------paaleaiFeSellDdlhlrnlaa----kcnd------------- 185 (524)
T KOG4413|consen 133 ILDCIGGEDDEVAKAAIESIKRIALF----------PAALEAIFESELLDDLHLRNLAA----KCND------------- 185 (524)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhc----------HHHHHHhcccccCChHHHhHHHh----hhhh-------------
Confidence 88999999999999999988887641 222222211 1111111111100 0010
Q ss_pred hhhhHHHHHHHHHHHhC--CCccccH--hhHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhc-chhc--HHHHHHHHHhh
Q 000098 2049 LSAFNAHALGALAEVAG--PGLNFHL--GTILPALLSAMGD-DDMDVQSLAKEAAETVTLVI-DEEG--VESLVSELLKG 2120 (2256)
Q Consensus 2049 ~~~~~~~aL~~La~~~g--~~l~~~l--~~Ilp~Ll~~l~~-~~~~vr~~a~~al~~l~~~~-~~~~--~~~ll~~Ll~~ 2120 (2256)
..+.+++.-+.+.+. +....+. .-++..|...+.. .|.-++...++....+...- +.++ -..+++.+...
T Consensus 186 --iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 186 --IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 122333333333321 1111111 2356666666655 44455655555555555421 1121 12244444443
Q ss_pred c--CCCChhhHHHHHHHHHHHHHhc------hhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccC
Q 000098 2121 V--GDNQASIRRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2121 l--~~~~~~vR~~A~~~l~~l~~~~------~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
+ .|.+|-.+--+....|.|+.+. .......++..+...+.++...|++...+|..++|.+....
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 3 2334544555666777776532 22233344556677777778888999999999999876543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.26 Score=60.83 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=82.5
Q ss_pred HHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH
Q 000098 1885 VLMNTLI-SSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2256)
Q Consensus 1885 ~Ll~~L~-~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l 1963 (2256)
.+++.++ ..+.+.+..+|..|.+|||-.+- +..+...+.++.+.+.+...+..+|..++.++.+++...|...+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 4444333 56688999999999999997774 333444555666666665557889999999999999888876554333
Q ss_pred --------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000098 1964 --------DELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1964 --------~~li~~l~~~L~D~~~~VR~~A~~al~~l~~ 1994 (2256)
..+...+.+.+.+.++++|..|++++..+.-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 4688888888988899999999999998875
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.071 Score=66.92 Aligned_cols=230 Identities=18% Similarity=0.229 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhhccc---cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhcc-----CCcchHHHHHH
Q 000098 1233 RGRMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK-----DDPKVHAVVDK 1304 (2256)
Q Consensus 1233 R~~a~~a~~~~i~~~g~~---~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~-----~~~~i~~il~~ 1304 (2256)
+..+++....+...++.. .++..+...|++|... +....+|.+-..++.+|+.+++.... ..|.+..+++.
T Consensus 113 K~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~-~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~ 191 (370)
T PF08506_consen 113 KAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKI-SQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEK 191 (370)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHH
Confidence 334444444444444322 3455666677777653 22334556667788888887753211 11223333332
Q ss_pred HH-HHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH
Q 000098 1305 LL-DVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2256)
Q Consensus 1305 Ll-~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L 1383 (2256)
++ ..+.-.+.+ ...+.++-.+++.+=++ .++....|++|...+.++++..+..... .++..+
T Consensus 192 VI~Pnl~~~e~D------------~ElfEddP~EYIrrd~e---~sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i 254 (370)
T PF08506_consen 192 VIFPNLCLREED------------EELFEDDPEEYIRRDLE---GSDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYI 254 (370)
T ss_dssp THHHHHS--HHH------------HHHHHHSHHHHHHHHSC---SS---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred hccCccCCCHHH------------HHHHccCHHHHHHhhcc---ccccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHH
Confidence 21 111111110 11123445677776443 2333456777777778888776543332 234445
Q ss_pred HHHHh-----CCCCHHHHHHHHHHHHHHHHHhc------c------CchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 000098 1384 REGLA-----DRNSAKRREGALLAFECLCEKLG------R------LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAAR 1445 (2256)
Q Consensus 1384 ~~~l~-----~~~~~~~Re~al~al~~L~~~l~------~------~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~ 1445 (2256)
.+.+. ...+|+.+++|+..++.++.... . .+..+. ..++|.+. .-.+..+-+|-.|.+.+.
T Consensus 255 ~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~ 333 (370)
T PF08506_consen 255 QQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLY 333 (370)
T ss_dssp HHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHH
Confidence 54443 35689999999999999986531 1 123333 34566665 444567888888888888
Q ss_pred HHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHH
Q 000098 1446 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2256)
Q Consensus 1446 ~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~ 1481 (2256)
.+-+.++++.+..++|.+...|.+++.-++..|+.+
T Consensus 334 ~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 334 TFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 888888888889999999999999988887776654
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.035 Score=64.66 Aligned_cols=180 Identities=19% Similarity=0.193 Sum_probs=123.3
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH---
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--- 1535 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i--- 1535 (2256)
.+...+..|++++|..+..++..+..++..-++.+...|..++..+++-++.....|-++||.++..+...+.+.-.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788999999999999999999989999999999999999999999999999999999999988765432
Q ss_pred HhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1536 ASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
+.++-.|+..-.+.+.-+|+ +-++|... +. ...-+.+++.+..++.+.++.+|..++....+....++-.....
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aM--V~---~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAM--VN---HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHH--Hh---ccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 33443443333333444553 33444321 11 11224567777778888899999988866655544333222334
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
++...+.+.+.+-+.|.-|.+|+.+-..+
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHHH
Confidence 45556667777777777777775554433
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=5.1 Score=53.37 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1419 IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1419 ~~llp~ll~~l~-D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
..++-.++..++ |+...||.++...+..+..+....+. +..+-.|-....|..-.+|..++..|+.+....|.-++-
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~- 653 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSL- 653 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhh-
Confidence 345667777776 88889999999888888777765554 333444444455777777888899999888776654311
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
-..-+-.++..++|.+..|...|..-+.++.
T Consensus 654 ~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 654 SSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 1233445666789999999998887665544
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.23 Score=63.64 Aligned_cols=224 Identities=18% Similarity=0.145 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHhhhccCC---cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC---c-hHHHHHHHHHHHhcCC
Q 000098 1278 EGVVIFTGALAKHLAKDD---PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---E-APTLVSRLLDQLMKSD 1350 (2256)
Q Consensus 1278 ~~av~~L~~La~~l~~~~---~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~---~-~~~~l~~Ll~~L~~~~ 1350 (2256)
+.++.++..+...++..+ .-+..++.-++.....++..||..+...|..++...++ + +..+...++..+.+ .
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D-r 138 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD-R 138 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-c
Confidence 345666666665554332 23455666677788889999998887777777663322 2 34555666666654 4
Q ss_pred CHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcC
Q 000098 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1351 ~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~ 1430 (2256)
.+.||..|..+|..+=..-+.+ ..++...+...++++.++++|.+++..+. -. ..-+|.++....
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de---e~~v~n~l~~liqnDpS~EVRRaaLsnI~---vd---------nsTlp~IveRar 203 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE---ECPVVNLLKDLIQNDPSDEVRRAALSNIS---VD---------NSTLPCIVERAR 203 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCCcHHHHHHHHHhhc---cC---------cccchhHHHHhh
Confidence 5899999999998775433333 33788888889999889999998876432 11 123567778888
Q ss_pred CCcHHHHHHH-HHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc
Q 000098 1431 DQVVAVREAA-ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2256)
Q Consensus 1431 D~~~~VR~aa-~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~ 1509 (2256)
|-+..+|..+ ..++..+ .+-...+++.+-.+-.++.|.+..+|.++...+.. ++-... ..=++.+++.+.
T Consensus 204 DV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~---~Wl~~~----dgni~ElL~~ld 274 (892)
T KOG2025|consen 204 DVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS---GWLRFS----DGNILELLERLD 274 (892)
T ss_pred hhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH---HHhhhc----cccHHHHHHHhc
Confidence 8888888876 3344444 33333456666667778888888888887765542 221111 111223444454
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 000098 1510 DT-HPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1510 D~-~~~VR~aA~~aL~~l 1526 (2256)
-+ ..+|+..+.++|-..
T Consensus 275 vsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 275 VSNSSEVAVKALEALFSG 292 (892)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 33 348888888887663
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.11 Score=59.47 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC
Q 000098 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~ 1550 (2256)
--++....+||++.. ..-+|.+...+.| .+|.||..|..+|++++. + ..++.+-+..+||-
T Consensus 51 llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~----~---~~~~~l~k~~~dp~ 113 (289)
T KOG0567|consen 51 LLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----P---ESLEILTKYIKDPC 113 (289)
T ss_pred hhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc----h---hhHHHHHHHhcCCc
Confidence 334455566666543 2456777777765 578899999999999872 2 33455556667887
Q ss_pred hhHHH-HHHHHHhcccccC------------CC--hhhHhhHHHHHHHhhcCCC-H-HHHHHHHHHHHHHhhhcCCCCcc
Q 000098 1551 DHTKY-SLDILLQTTFVNT------------VD--APSLALLVPIVHRGLRERS-A-ETKKKAAQIVGNMCSLVTEPKDM 1613 (2256)
Q Consensus 1551 ~~vr~-al~~L~~~~~~~~------------~~--~~~l~~i~p~L~~~L~d~~-~-~vR~~a~~~l~~L~~~l~~~~~l 1613 (2256)
..+++ |.-++......+. .+ .|....-++-+...+.|.+ + --|..+...+.+...
T Consensus 114 ~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-------- 185 (289)
T KOG0567|consen 114 KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-------- 185 (289)
T ss_pred cccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--------
Confidence 77764 3333322111110 11 1101111233333333322 2 223333333333321
Q ss_pred hhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1614 ~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~-~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
+.-+..+...+.+++.-.|-.++-++|.+-. +.-+|.|.+.|.+. +.+-+|..++.+|+.+..
T Consensus 186 ----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 186 ----EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred ----HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----
Confidence 1235566677777888889888888887764 45677777777664 345589999999988753
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH
Q 000098 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2256)
Q Consensus 1693 ~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f 1731 (2256)
+..++.+.+.+.|+.+-||+++..++..+--..|+.|
T Consensus 250 --e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 250 --EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred --HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 3455567777888999999998877765544334443
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.31 E-value=1 Score=58.50 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHH
Q 000098 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2256)
Q Consensus 1660 p~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~il 1739 (2256)
..++...+. +...+.-+++-+..+...+.. .-+..+..++..+.|.+..||..++..+..+|+.-++ |+..+.
T Consensus 26 ~~il~~~kg--~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kva 98 (556)
T PF05918_consen 26 KEILDGVKG--SPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVA 98 (556)
T ss_dssp HHHHHGGGS---HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHH
T ss_pred HHHHHHccC--CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHH
Confidence 334444443 455677777777777666532 3466778888889999999999999988888877544 788899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1740 p~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
..|.++|..+++..+..+-.++..+...-....+..++..+... ...+..+|..++..+..-+
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHH
Confidence 99999999888777777777777776544333333344444311 1234567888887775544
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.05 Score=70.13 Aligned_cols=187 Identities=15% Similarity=0.226 Sum_probs=138.8
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
.-..++|.+.+++...+..+|..-.+-+..+...+.. ..+.+.+.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4456899999999999999998877777777765543 235667899999999999999999999999999999987
Q ss_pred Cch-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD-IIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1653 ~~~-~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~-ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
..+ .+++..+-. ++.|+....|.....+++.+...+.......++.. +...+.|+-...|.+....+......+..
T Consensus 403 ~~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHHh-hCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 733 456666644 44466666888888888887766555444444432 33456777777888877776655554443
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
...-.+|+|.+....-|++..||+.|..++.....
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 23456788888888889999999999988776544
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.28 E-value=8.7 Score=53.09 Aligned_cols=164 Identities=13% Similarity=0.265 Sum_probs=115.8
Q ss_pred hc-HhHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 000098 1689 LG-TVYFEHILPDIIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGH 1762 (2256)
Q Consensus 1689 ~g-~~~l~~ll~~ll~~l~~----~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~-d~~~~VR~~Al~al~ 1762 (2256)
.| +..+..+.|.+...+++ .+|..+.+|.-+++.+...-. .|.+.-+|.++..+. .+++.+|.++.-+++
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~Vvalg 986 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALG 986 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchhecc
Confidence 35 33556777888887755 378899999888886654322 355666788888887 778999999888887
Q ss_pred HHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhh
Q 000098 1763 VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2256)
Q Consensus 1763 ~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~ 1842 (2256)
.+.-.|.. .++..-+.+-+.+.|++..+|..|+-.+..++.+ .++.+=|
T Consensus 987 Dlav~fpn-lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--------------------------dmiKVKG---- 1035 (1251)
T KOG0414|consen 987 DLAVRFPN-LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--------------------------DMIKVKG---- 1035 (1251)
T ss_pred chhhhccc-ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--------------------------hhhHhcc----
Confidence 77655532 3455667788888999999999999999888632 1111112
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 000098 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTL 1890 (2256)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L 1890 (2256)
.++.+-.++.|++..++..|-..|+.+.... ..+-.++|.++..+
T Consensus 1036 --ql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~L 1080 (1251)
T KOG0414|consen 1036 --QLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRL 1080 (1251)
T ss_pred --cHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhh
Confidence 3444556788999999999999999998765 45555666555443
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.61 Score=55.79 Aligned_cols=226 Identities=15% Similarity=0.152 Sum_probs=141.2
Q ss_pred hhhhhHHHHHHHHHHhhhccC---CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh---cCchHHHHHHHHHHHh
Q 000098 1274 DLVREGVVIFTGALAKHLAKD---DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---QDEAPTLVSRLLDQLM 1347 (2256)
Q Consensus 1274 ~~vr~~av~~L~~La~~l~~~---~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~---~~~~~~~l~~Ll~~L~ 1347 (2256)
+.+|..++.+|+.+...++++ ...+..++.-+...+.|. ..+.. +..++..++... .+....++..+++...
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVKMKNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHhCcCCChhhHHHHHHHHHHhCC
Confidence 478999999999998887753 223455555555566432 22333 356666666322 1223344444444322
Q ss_pred c-CCCHHHHHHHHHHHHHHHhhhCcccch-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHH
Q 000098 1348 K-SDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2256)
Q Consensus 1348 ~-~~~~~vR~~Aa~~L~~lv~~~g~~~~~-~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~l 1425 (2256)
- +-....|......+..++.......-. ....+..+.+.+..++||+.--.+...+..+...+. +.++..++...+
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~ 168 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVF 168 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHh
Confidence 1 113567888888888888765321110 125667777889999999887777776666666665 366777776665
Q ss_pred HHHc--------CCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh-hHhhh
Q 000098 1426 LVAF--------SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQC 1496 (2256)
Q Consensus 1426 l~~l--------~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~-~l~~~ 1496 (2256)
...+ +|+...-|+.-..++...+...+ .--+..+|.+++.|.+....+|..+++.|...+...+. .+.++
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5443 34433344444555555543222 11267899999999999999999999999888876643 46666
Q ss_pred hhhHHHHH
Q 000098 1497 LPKIVPKL 1504 (2256)
Q Consensus 1497 L~~Ivp~L 1504 (2256)
...|+..+
T Consensus 248 ~~~iw~~l 255 (262)
T PF14500_consen 248 WSTIWNAL 255 (262)
T ss_pred HHHHHHHH
Confidence 66666655
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.17 Score=60.01 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-cccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cC
Q 000098 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2256)
Q Consensus 1337 ~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g-~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--~~ 1413 (2256)
+.+..++..|...+++.++..+..+++..+.... .+.....+.++.+...+.++ ++.+|+.|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 3456667767667778888888888876543211 12222335677777777765 88999999998887765433 23
Q ss_pred chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
.+.|+.+++..+... .-+..+..++..++..+.-.-.. +.+...+|.++..+..++-.+|..++.+|..+++.. ..
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~ 167 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP-DM 167 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-HH
Confidence 456666666655442 23567777777777776422111 234667888899999888899999999999988752 21
Q ss_pred Hhhhh-hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhcCch
Q 000098 1493 LSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1493 l~~~L-~~Ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
....+ .+.++.++.+++.. ..++...+...+.++.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 14556667777654 6778888888888888777643
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0098 Score=45.53 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1500 Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
|+|.+.++++|++++||.+|+.+|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.033 Score=71.66 Aligned_cols=190 Identities=21% Similarity=0.194 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000098 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~ 1414 (2256)
++..+...+-.|+...+..+|.--.+.+..++..+..+.+. ..|+|.+...+.|. ++..|+..+.++..++..++..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~-d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN-DQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc-chhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh-
Confidence 44445556666778888899998888888888888766553 46899999888887 8999999999999999888752
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHH-HhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll-~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..=.+++..+-..-.|++..+|.-..-|++.+..++.+...+.++...+ ..+.|.....|.+++..+.......+..
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~- 481 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS- 481 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh-
Confidence 2233566666666668889999988889998887776554445554443 4577888888999888776655544433
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
..-..|+|.+....-|+++.||..|..++..+...+
T Consensus 482 -~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 482 -EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred -hhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 223478888888999999999999999998887654
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.89 E-value=9.8 Score=50.23 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcC-C-CCHHHHHHHHHHHHHHHHhhcCCCcccc
Q 000098 1738 VLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-N-DNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2256)
Q Consensus 1738 ilp~Ll~~L~d~-~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~-d-~~~~iR~~sv~llg~ll~~~~g~~~~~~ 1814 (2256)
.++.+...+... -.+=|..|+++++.+.+.|.......-++.+.+-+. | .+..+-..+++.+-.+..+ +.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~-----dd-- 95 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH-----DD-- 95 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc-----Cc--
Confidence 344444443322 234478888999988887765433333333333332 2 2344444555555544311 00
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHH---HHHHHHHH
Q 000098 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM---PVLMNTLI 1891 (2256)
Q Consensus 1815 ~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l---~~Ll~~L~ 1891 (2256)
.....|++...+..+..+++.+-. ..+.+..+...+..-+..||-.++..+.++..+-|..++..+ |.-+..++
T Consensus 96 -~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 96 -SPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred -chhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 000111222233344455554421 123444555556666788999999999999998887777654 66677788
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHhhhc
Q 000098 1892 SSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGL 1932 (2256)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~l 1932 (2256)
..+.|..+.+|..+...|.++++..+.- .++.++..|...+
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII 217 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII 217 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999866532 2344444444444
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.3 Score=56.27 Aligned_cols=368 Identities=17% Similarity=0.204 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--chHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccc
Q 000098 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--EAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSL 1374 (2256)
Q Consensus 1298 i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~ 1374 (2256)
+...++.++.-|.+|+..||..+.+.+..+....+. ...-.+..|++...+.+ ...+|.-+..-+..-+..+..+
T Consensus 21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~-- 98 (501)
T PF13001_consen 21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE-- 98 (501)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH--
Confidence 455667777888999999999999999988877743 44556777888877665 5667765544443222222111
Q ss_pred hhhcHHHHHHHHHhCCCCHHH--HHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHH--HHH-HHHHHHh
Q 000098 1375 KKYGIAATLREGLADRNSAKR--REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA--AEC-AARAMMS 1449 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~--Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~a--a~~-al~~l~~ 1449 (2256)
.+..++|.+.+.+......+. .......|..+++.+.. ...-. ... ..+...|+. -.+ +...+..
T Consensus 99 e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~-~~~~~--------~~~-~~~~~~~~~~~l~~~~~~~~l~ 168 (501)
T PF13001_consen 99 ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPD-WKEPP--------RGS-KEDEKFRDSLGLSDFCDDVFLA 168 (501)
T ss_pred HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCc-ccccc--------ccc-hhhhcHHHHHhhcchHHHHHcc
Confidence 122677777777753211110 00111112222222110 00000 000 000111111 000 0000000
Q ss_pred hhhH-------------hhH----HhHHHH-HHHhc-cCCC--------hhHHHHHHHHHHHHHhhChhhHhhhhhhHHH
Q 000098 1450 QLSA-------------QGV----KLVLPS-LLKGL-EDKA--------WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502 (2256)
Q Consensus 1450 ~l~~-------------~~v----~~ilp~-Ll~~L-~~~~--------w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp 1502 (2256)
.... .+. ...+.. -.+.+ .... -+.|.+.+..+..... ++ ...++
T Consensus 169 ~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f--~d------~~~~~ 240 (501)
T PF13001_consen 169 PWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFF--PD------EERFP 240 (501)
T ss_pred hhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCC--Cc------HhHHh
Confidence 0000 000 000000 00011 1111 1245555555554333 11 13344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh-HHhHHHHHH--hhhCC----C-ChhHHH-HHHHHHhcccccCCChhh
Q 000098 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLL--MGLTD----P-NDHTKY-SLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-i~~lv~~Ll--~~l~d----~-~~~vr~-al~~L~~~~~~~~~~~~~ 1573 (2256)
.++-.-.|++.+|...|-..|+++...+.++. ++.++.... ..-.+ | +..+|. .+..|.+.... ...
T Consensus 241 ~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A----a~~ 316 (501)
T PF13001_consen 241 PLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA----ATS 316 (501)
T ss_pred heeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH----HhC
Confidence 44445578899999999999999987766554 355555554 11111 1 122332 33333331000 112
Q ss_pred HhhHHHHHHHhhcCC--CHHHHHHHHHHH---HHHhhhcCCCCcchhhhhhhhHHHHHhhc--------CCCHHHHHHHH
Q 000098 1574 LALLVPIVHRGLRER--SAETKKKAAQIV---GNMCSLVTEPKDMIPYIGLLLPEVKKVLV--------DPIPEVRSVAA 1640 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~--~~~vR~~a~~~l---~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~--------d~~~~VR~~a~ 1640 (2256)
.+.++.++..++.+. +.+.|..+.+.+ .+..... .+..+...-+.+...+...+. ..+...|..+.
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~-~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI-SPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhc-CHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 234666777777776 567777777887 6665532 212222222333333333342 24678999999
Q ss_pred HHHHHHHHhhCcCc--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1641 RAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1641 ~aL~~L~~~~g~~~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
++||.++.....-. --.++.+|++.|. ++...+|...-.+|+.++..+..
T Consensus 396 e~lG~L~~~~p~l~~~d~~li~~LF~sL~-~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSKDLSLIEFLFDSLE-DESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHhh-CcchHHHHHHHHHHHHHHHHHhc
Confidence 99999998765432 2358999999994 45666888888889888877643
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.23 Score=63.19 Aligned_cols=150 Identities=25% Similarity=0.346 Sum_probs=110.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc----chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh-
Q 000098 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM- 1650 (2256)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~----l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~- 1650 (2256)
+.-|.+.++|+-++..||..|+..+-++.-+ .++.. +...++.-...+..++.|+.|.||..|...+..+...+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999998888774 45433 22333333446778899999999999998887776544
Q ss_pred ---CcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc-HhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh
Q 000098 1651 ---GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2256)
Q Consensus 1651 ---g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g-~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~ 1726 (2256)
++....+++..+.+.+..|....+|.....++..++..-- -..++.++|.+-..+.|....||.++..++..+-.+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 3334556666677777777777899999999888764322 225678888887888899999999988887765443
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.35 Score=62.44 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHhHHH-HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHhhcCC
Q 000098 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDT 1511 (2256)
Q Consensus 1434 ~~VR~aa~~al~~l~~~l~~~~v~~ilp-~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~ 1511 (2256)
-.-|-.|+.+++.++..++......++. .++.+|.+..--.|..+...+..++......-... .+.+.+.|...|+++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4568889999999999998877777776 58899999999999999999999998765432111 345566666666643
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.7 Score=54.81 Aligned_cols=123 Identities=16% Similarity=0.164 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCC
Q 000098 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1857 ~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~ 1936 (2256)
+..++..|.+.+..+....|.--.+-+..+++ ...+.+..+|..|.+.|..+|+. ..++.+.+...|.+.|..++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~D----LcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLD----LCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHH----HHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH----HHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhccc
Confidence 46688889999988888888765555555544 45899999999999999999985 34578899999999999888
Q ss_pred hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000098 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2256)
Q Consensus 1937 ~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al 1989 (2256)
+..+..+-.+|.+++..-....+. .++..+... ...++.+|+.+...+
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~----~lf~~i~~~-~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLT----GLFSQIESS-KSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHH----HS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHhc-ccCchHHHHHHHHHH
Confidence 887777777777776543332222 222222211 145677898765544
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=11 Score=48.38 Aligned_cols=221 Identities=12% Similarity=0.215 Sum_probs=126.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC---c--h-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-
Q 000098 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---E--A-------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF- 1369 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~---~--~-------~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~- 1369 (2256)
......++ +...-+.+.+|+-.+.+...+ . + ...++..+..-...++...+.+.+.-+..+....
T Consensus 202 ~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~ 279 (559)
T KOG2081|consen 202 TLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFV 279 (559)
T ss_pred HHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 33344444 233445566776665554411 1 1 1122333333334456666665555555444422
Q ss_pred -----CcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--------cCchHhHHHHHHHHHHHcCCC----
Q 000098 1370 -----GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQ---- 1432 (2256)
Q Consensus 1370 -----g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--------~~~~pyv~~llp~ll~~l~D~---- 1432 (2256)
+++.. ..++..+.-... +.++++-+..+..+-.+.+.+- ..|.||..+++..+.....=+
T Consensus 280 ~~i~~np~~~--l~~vellLl~~~-h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~ 356 (559)
T KOG2081|consen 280 VLISTNPEEF--LRIVELLLLVAG-HNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQF 356 (559)
T ss_pred HHHhhCCCcc--hhHHHHHHHhcc-CCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccc
Confidence 22211 133433333323 3367777777777777776531 357899988888877654311
Q ss_pred --------cHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHH
Q 000098 1433 --------VVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2256)
Q Consensus 1433 --------~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~ 1503 (2256)
-..-|....+.+..+...+++... +...-.+.+ ....|+.-.+++..+..++...+..-...+|+++..
T Consensus 357 ~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~ 434 (559)
T KOG2081|consen 357 DLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKL 434 (559)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHH
Confidence 124566666777766655554432 333333322 457899999999999999998766555555666555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
+.++= ....+|..++.-++.+.+++..
T Consensus 435 i~nlp--~Q~~~~~ts~ll~g~~~ew~~~ 461 (559)
T KOG2081|consen 435 ICNLP--EQAPLRYTSILLLGEYSEWVEQ 461 (559)
T ss_pred HhCCc--cchhHHHHHHHHHHHHHHHHHh
Confidence 44332 2233999999999999988753
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.54 E-value=13 Score=48.96 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh
Q 000098 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2256)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~ 1958 (2256)
+..++..++..+... ...+..|...--+++.++..+|+.++|.+=..+...+.|.++..-.+...-+.+++..... .
T Consensus 693 f~~~ldvil~~ls~f--~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~-~ 769 (980)
T KOG2021|consen 693 FSNILDVILVTLSFF--NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKT-D 769 (980)
T ss_pred HHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-H
Confidence 444555555544322 2356789999999999999999998887766666677787887777777777777765542 2
Q ss_pred hHhhHhhHHHHHH
Q 000098 1959 LLSFMDELIPTIR 1971 (2256)
Q Consensus 1959 l~~~l~~li~~l~ 1971 (2256)
..+.+.+++|.+.
T Consensus 770 ~~~ilnqmlppll 782 (980)
T KOG2021|consen 770 CYQILNQMLPPLL 782 (980)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555443
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.45 E-value=11 Score=47.83 Aligned_cols=174 Identities=21% Similarity=0.161 Sum_probs=111.7
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
..+.++..+.+++..++..||..+++++..+...++...+ .....++..+..-+-|..+.||..|..++..+-+--+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455666788888889999999999999999886643211 23445666777777799999999999999988765443
Q ss_pred CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh-H
Q 000098 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-F 1731 (2256)
Q Consensus 1653 ~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~-f 1731 (2256)
+ -..+...+...+++|++..+|+.+...+.. -....|.++..+.|.+...|..+. ..+-..+|+. +
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v---------dnsT~p~IlERarDv~~anRr~vY---~r~Lp~iGd~~~ 232 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV---------DNSTYPCILERARDVSGANRRMVY---ERCLPRIGDLKS 232 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee---------CCCcchhHHHHhhhhhHHHHHHHH---HHHhhhhcchhh
Confidence 3 245666778888899999999876543321 123456677777776666555422 1122222221 1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000098 1732 QNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2256)
Q Consensus 1732 ~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~ 1762 (2256)
..--+.+. .+--++.|.+..|+.++.+++.
T Consensus 233 lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 233 LSIDKRIL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred ccccceeh-hhhhcchhhhhhHHHHHHHHHH
Confidence 00111122 3445677777788877766543
|
|
| >COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.37 E-value=6.3 Score=50.94 Aligned_cols=169 Identities=20% Similarity=0.294 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhCcC------------chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHH
Q 000098 1631 PIPEVRSVAARAIGSLIRGMGEE------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2256)
Q Consensus 1631 ~~~~VR~~a~~aL~~L~~~~g~~------------~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll 1698 (2256)
.....|..-++|+..+...+-+. +.+.++..+.+.+.+ .+..+|-.++.++++++..++-...+.++
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss-~~~~~rf~~a~~~aki~srl~w~l~~sfi 286 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSS-IDSFVRFSAAKGLAKIISRLPWNLAESFI 286 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCccc-ccHHHHHHHHhhHHHHHhhcccccHHHHH
Confidence 44556666666776666544331 233455555555544 45568999999999999888765433333
Q ss_pred H---HHHHh-----ccC------CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCC--------HHHHHH
Q 000098 1699 P---DIIRN-----CSH------QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--------ESVRDA 1756 (2256)
Q Consensus 1699 ~---~ll~~-----l~~------~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~--------~~VR~~ 1756 (2256)
. ...++ +++ .++.+--+++..++ ++...+-+....+ +.|.+.++++-++ ..+|+.
T Consensus 287 ~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRds 363 (993)
T COG5234 287 DIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDS 363 (993)
T ss_pred HHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecc
Confidence 3 11111 111 25556666666565 6766666543332 5666667766443 257787
Q ss_pred HHHHHHHHHHHhhccchhc----hHHHHHh-hcCCCCHHHHHHHHHHHHHHH
Q 000098 1757 ALGAGHVLVEHYATTSLPL----LLPAVED-GIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1757 Al~al~~iv~~~~~~~~~~----llp~L~~-~l~d~~~~iR~~sv~llg~ll 1803 (2256)
++--++.+...+.....+. +.-.+.+ .++|+.-.+|.++..++-+++
T Consensus 364 s~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 364 SCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred cceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 7666666555555444333 2233333 678999999999887776664
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.25 E-value=35 Score=52.33 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=59.2
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~ 1534 (2256)
.+++.+.+..--.|.+|+..++.++..+|..+-++++.++..+...+.|+++.+|..||.++.......++..
T Consensus 138 ~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~ 210 (2341)
T KOG0891|consen 138 RLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE 210 (2341)
T ss_pred HHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc
Confidence 3334444445556778889999999999999989999999999999999999999999999998877665544
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.22 E-value=3.6 Score=54.53 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCC--CHHHHHHHHHHH---HHHHhhcchhcHHHHHHHH----HhhcC-
Q 000098 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDD--DMDVQSLAKEAA---ETVTLVIDEEGVESLVSEL----LKGVG- 2122 (2256)
Q Consensus 2053 ~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~--~~~vr~~a~~al---~~l~~~~~~~~~~~ll~~L----l~~l~- 2122 (2256)
..+.|..|.+..... ..++.++..+...+.++ +..+|..+..-+ ..++..++...+..+-+.+ .+.+.
T Consensus 300 q~kIL~~L~kS~~Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~ 377 (501)
T PF13001_consen 300 QEKILSLLSKSVIAA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQD 377 (501)
T ss_pred HHHHHHHHHHhHHHH--hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccc
Confidence 456777776543221 23466667777777666 566777777777 6666666555444444433 33342
Q ss_pred -------CCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC
Q 000098 2123 -------DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2256)
Q Consensus 2123 -------~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~ 2186 (2256)
..+...|..++++||.++...+.-+..- -.++.-|+..+.++++++|-+.-+||+.++.....
T Consensus 378 ~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 378 SSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 2347789999999999999877655222 46677888888999999999999999999877654
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=4.5 Score=60.19 Aligned_cols=308 Identities=12% Similarity=0.024 Sum_probs=173.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcc-------chhchHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
.+++..++..|...|.+++-++-+. +..+++..+...+. ..+.++|..+..++.+++...+. .+....+.+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-nIkSGWktI 1225 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-NVKSGWKSM 1225 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-hhhcCcHHH
Confidence 3446677888888888887655322 33556666655444 34678999999999999987764 456677889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-------hhHHhHHHHHHHhhccC---CchHHHHHHHHHHHhhhcccc
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAV 2036 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~-------~~~~~ilp~Ll~~L~~~---~~~~~al~~L~~il~~~~~~~ 2036 (2256)
+..+..+..+.++.+-+.|.+++..++...-. ..+.+++..|.+--.+. +.+=.+++-|..+...-.+.-
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99988888888888877777777766653221 23333443333322222 122234444433211100000
Q ss_pred hhhhhh-h-hhcCch-hhhHHHHHHHHHHHhC-CCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchh----
Q 000098 2037 LPHILP-K-LVHLPL-SAFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE---- 2108 (2256)
Q Consensus 2037 lp~li~-~-L~~~p~-~~~~~~aL~~La~~~g-~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~---- 2108 (2256)
+..... . ...++. +..............+ .....++-.++-.|.+...++..+||..|+..+=+++...|..
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 000000 0 000000 0000000000000001 1111233334444444456788999999999998888766541
Q ss_pred c----HHHHHHHHHhhcCCC------------------C------h--hhHHHHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 000098 2109 G----VESLVSELLKGVGDN------------------Q------A--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 2158 (2256)
Q Consensus 2109 ~----~~~ll~~Ll~~l~~~------------------~------~--~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L 2158 (2256)
. ...++-.++..++.. + | .....|+..+..++.+.-..+.+.++.++..|
T Consensus 1386 ~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll 1465 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLL 1465 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 333444444333210 0 1 33444556666666655556677888888888
Q ss_pred HHHcCCCChHHHHHHHHHHHHhhccCC----CCchhchHHHHHHHHhhh
Q 000098 2159 IVLLSDSDSTTVAAAWEALSRVVASVP----KEVQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2159 ~~~l~D~d~~Vr~~A~~aL~~l~~~l~----~e~l~~lv~~l~~~l~~~ 2203 (2256)
..++..++..+-+....||-.++...+ .+++...+..+.+....+
T Consensus 1466 ~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1466 VSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999887654 356777777776666544
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.2 Score=49.80 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=144.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhccc-----hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCC
Q 000098 1744 DGLADENESVRDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818 (2256)
Q Consensus 1744 ~~L~d~~~~VR~~Al~al~~iv~~~~~~~-----~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~ 1818 (2256)
..|.++++.+|..|+..+..++..+.... +..++..+.+.+. +|..-..++..+..+... ...
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~--------- 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF--------- 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC---------
Confidence 45778899999999999998888776442 3345555555553 343333445555555411 000
Q ss_pred CCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHh-c
Q 000098 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL-A 1895 (2256)
Q Consensus 1819 ~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L-~ 1895 (2256)
+.+....++..++... ..-....|.....++..+..+....+..+-+.++..++... +
T Consensus 74 -------------------~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g 134 (262)
T PF14500_consen 74 -------------------SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG 134 (262)
T ss_pred -------------------ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc
Confidence 0001112233333221 12234578888999988888776666655556666655554 4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCc-cchhchHHHHhhhc--------CCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhH
Q 000098 1896 SSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGL--------KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2256)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~~~~~-~~l~~llp~L~~~l--------~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~l 1966 (2256)
+.++.--..+.+.+..+...... .+.+++...+.-.+ +|+..-+|.....+|...+.+. ..|.+..
T Consensus 135 EkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-----~~fa~~~ 209 (262)
T PF14500_consen 135 EKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-----PLFAPFA 209 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-----HhhHHHH
Confidence 56777777777777777665543 24445444443222 1222234555555555444321 1344678
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhcc
Q 000098 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014 (2256)
Q Consensus 1967 i~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~ 2014 (2256)
+|.+.+-+....+.++..+..++.......|...+...+..+|+.|+.
T Consensus 210 ~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 210 FPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999989988888888888877654
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=95.15 E-value=5.7 Score=50.68 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc--chhc--hHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000098 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2256)
Q Consensus 1881 ~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~--~l~~--llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2256)
+++..|+..+. .+.++..-..|+.=+|++++..+.+ .+.+ .-..+.+.+.++++++|..+..|+..++.
T Consensus 353 ~llk~L~~iL~---~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLE---TSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHh---cCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34444444431 3556777788899999999987433 3322 22335566778899999999999887753
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.04 E-value=2.2 Score=52.66 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=96.0
Q ss_pred HHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hh
Q 000098 1418 VIQMLPLLL-VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQ 1495 (2256)
Q Consensus 1418 v~~llp~ll-~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~ 1495 (2256)
+..++..++ .++..+++.||+.+..+++-++- +........++.+...+..++-.+|..|+.++..+.-..+... ..
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 346665544 67888899999999999998753 3333446678888888876788999999999998886644322 11
Q ss_pred --------hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh--hcCc-hh-HHhHHHHHHhhhCCCChhHHHHHHHHH
Q 000098 1496 --------CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS--VIKN-PE-IASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2256)
Q Consensus 1496 --------~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~--~i~~-~~-i~~lv~~Ll~~l~d~~~~vr~al~~L~ 1561 (2256)
.-..++..+.+.+.+.++++|..|++++..+.- .+.+ +. +..++-....--..++...|.++....
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 224688888999999999999999999988653 2333 32 233333333333333445666655544
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.036 Score=42.41 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.4
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1620 Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
++|.+.+.++|++|+||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.95 E-value=30 Score=49.95 Aligned_cols=288 Identities=16% Similarity=0.206 Sum_probs=154.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCc--h----hHHhHHHHHHhhh---CCCC-hhH-H--HHHHHHHhcccccCCChhh
Q 000098 1507 VLTDTHPKVQSAGQTALQQVGSVIKN--P----EIASLVPTLLMGL---TDPN-DHT-K--YSLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~i~~--~----~i~~lv~~Ll~~l---~d~~-~~v-r--~al~~L~~~~~~~~~~~~~ 1573 (2256)
+|++++..||.-.+-|+..+...+.+ | .+..++..+++.+ .|.. ++. | .-++.+....|.-..+-+.
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 57889999999999999999888763 2 3455666555544 3432 222 2 2344444422222222222
Q ss_pred HhhHHHHHHH----hhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1574 LALLVPIVHR----GLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1574 l~~i~p~L~~----~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
-..+++.+.+ .+++..+.--.. ++.-+..++.....+. ..++.++..|...-.|.....+..+...+...+.
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~ 214 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD 214 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence 2333333333 332222211111 2221222222212221 2233333333333334455555555555555555
Q ss_pred hhCcCchHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHh---cHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q 000098 1649 GMGEENFPDLVSWLLDALKSDNS--NVERSGAAQGLSEVLAAL---GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2256)
Q Consensus 1649 ~~g~~~~~~lip~Ll~~L~~~~~--~~~R~~aa~~L~~i~~~~---g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~L 1723 (2256)
.+.+. +-..+...+..+.. ...+. -..+++..+ ..+.+-.++|.+..-+...+..+|..+...+|.+
T Consensus 215 ~~~~~----i~~f~~~~~~~~~s~~~~~~~----~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~ 286 (1266)
T KOG1525|consen 215 NLEDT----IANFLNSCLTEYKSRQSSLKI----KYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRM 286 (1266)
T ss_pred hhchh----HHHHHHHHHhhccccccchhh----HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44333 33333333332221 00111 122222221 2335667888888888899999999999999988
Q ss_pred HhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh------------------c---------------
Q 000098 1724 PRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA------------------T--------------- 1770 (2256)
Q Consensus 1724 a~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~------------------~--------------- 1770 (2256)
-..-+..+..-.+.+....+..+.|....||..+.+....+.-+.. .
T Consensus 287 ~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v 366 (1266)
T KOG1525|consen 287 FSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDV 366 (1266)
T ss_pred HhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeeh
Confidence 7666554443346677788888999999999888776554332100 0
Q ss_pred -----cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1771 -----TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1771 -----~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
..++.++..+.+.+.|..|+||..|+.-+..+..+
T Consensus 367 ~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 367 MKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 01122444555667899999999999999998753
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.84 E-value=11 Score=44.43 Aligned_cols=356 Identities=14% Similarity=0.146 Sum_probs=172.2
Q ss_pred CHHHHHH---HHHHHHHHHHh-hccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCC-cch-----
Q 000098 1229 NADVRGR---MLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-PKV----- 1298 (2256)
Q Consensus 1229 ~~~VR~~---a~~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~-~~i----- 1298 (2256)
|+..|.. ++.|...+++. .|......++|.+..-|.. +++.|+--++.-++.+.+..+..+ ..+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLia------ddasVKiLackqigcilEdcDtnaVseillvvN 126 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIA------DDASVKILACKQIGCILEDCDTNAVSEILLVVN 126 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccC------CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhh
Confidence 3444444 44555555543 3445567888888877654 223566667766666665544221 001
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhc
Q 000098 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2256)
Q Consensus 1299 ~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~ 1378 (2256)
..+++.++...-..+.+|.+++.+.+..+.. ++.-+..+|+.=..+ +...|.-|+.+= .++ ++.
T Consensus 127 aeilklildcIggeddeVAkAAiesikrial-----fpaaleaiFeSellD-dlhlrnlaakcn-dia---------RvR 190 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIAL-----FPAALEAIFESELLD-DLHLRNLAAKCN-DIA---------RVR 190 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-----cHHHHHHhcccccCC-hHHHhHHHhhhh-hHH---------HHH
Confidence 2344455555566666676666666554421 222333333322222 123333232221 011 122
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHhhhhHhh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG 1455 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~-D~~~~VR~aa~~al~~l~~~l~~~~ 1455 (2256)
++..+.+...-. + ....|. ..++..+...+. ..+.-|+-.+.+....++..-.+..
T Consensus 191 VleLIieifSiS--p-------------------esaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgre 249 (524)
T KOG4413|consen 191 VLELIIEIFSIS--P-------------------ESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGRE 249 (524)
T ss_pred HHHHHHHHHhcC--H-------------------HHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhh
Confidence 333333222111 0 011111 234555554443 3566777777776666664333322
Q ss_pred H---HhHHHHHHHhcc--CCChhHHHHHHHHHHHHHh------hChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1456 V---KLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAY------CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2256)
Q Consensus 1456 v---~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~------~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2256)
+ ..++..+...+. |.++..+.-++...|.+.. ..++++-..++..+...++...-.+|....+|..+++
T Consensus 250 flaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalG 329 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALG 329 (524)
T ss_pred hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHH
Confidence 2 234444444433 3444444444444443332 2466666777777888888888888999999999999
Q ss_pred HHHhhcCchhH-----HhHHHHHHhhhCCCChh--HHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1525 QVGSVIKNPEI-----ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1525 ~l~~~i~~~~i-----~~lv~~Ll~~l~d~~~~--vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
.++.......+ ..-...++...-|.+.+ ...+++.|..+.-..+... ....|.....| .-|
T Consensus 330 ilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkp-----------eqitDgkaeer-lrc 397 (524)
T KOG4413|consen 330 ILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKP-----------EQITDGKAEER-LRC 397 (524)
T ss_pred hccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCCh-----------hhccccHHHHH-HHH
Confidence 99876532221 11122233333333322 2223333332110000000 00111111222 223
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1598 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
.+....+.. + .+.| +..+...++.|.|++|-++.+.+.+++.
T Consensus 398 lifdaaaqs-t---kldP-----leLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 398 LIFDAAAQS-T---KLDP-----LELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHhhc-c---CCCh-----HHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 344444431 1 1122 3456677888999999999999998885
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.58 Score=55.01 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHH---hHHHHHHHhc
Q 000098 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK---LVLPSLLKGL 1467 (2256)
Q Consensus 1391 ~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~---~ilp~Ll~~L 1467 (2256)
++|...-.++..+..++..-.+.+.+.+..++..+.+.+++....|-.+|..++..++..+...... ..+-.|+..-
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka 179 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKA 179 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788888888888888877666677778888888999999999999999999999999888765432 3333333333
Q ss_pred cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000098 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1468 ~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~ 1531 (2256)
..++-.+|..|-.+|.+|......+ .+++.|..++.+.++.+|..++.++..+...++
T Consensus 180 ~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 180 SQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred cccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 4566778999999999999887554 566777778999999999999988877765554
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.65 E-value=52 Score=51.31 Aligned_cols=655 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHhc---cCchHhHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccC-CCh
Q 000098 1402 AFECLCEKLG---RLFEPYVIQMLPLLLVAFSDQVV-----AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-KAW 1472 (2256)
Q Consensus 1402 al~~L~~~l~---~~~~pyv~~llp~ll~~l~D~~~-----~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~-~~w 1472 (2256)
.|+....... +...||+..++..-+....+... .+-.+-...++.......-..+-+++|.+++.+.. ..-
T Consensus 612 ~F~sv~~f~~~nervl~phv~~Ii~~smela~~a~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~ 691 (3550)
T KOG0889|consen 612 IFGSVSKFPSENERVLRPHVHDIISTSMELATTAPEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSS 691 (3550)
T ss_pred hhhhhhcccccchhhcccchhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred hHHHHHHHHHHHHHhhChhh---HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCC
Q 000098 1473 RTKQSSVQLLGAMAYCAPQQ---LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~---l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~ 1549 (2256)
..+.+--+++..++-..|-. +.+++|-++..++.+++-+ ++.+..+..++.-......+.++..++
T Consensus 692 ~~s~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs-~~lvsQgLRtlelcvDnltPefL~~~m---------- 760 (3550)
T KOG0889|consen 692 FHSQGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGS-PELVSQGLRTLELCVDNLTPEFLDPIM---------- 760 (3550)
T ss_pred cCccchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCC-HHHHHHHHhHHHHHHhcCChHhhhHHH----------
Q ss_pred ChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhh------------
Q 000098 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY------------ 1616 (2256)
Q Consensus 1550 ~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~------------ 1616 (2256)
+|..+.++..+.+.+++. +...-..|..++|.+.. ...+.+.+.
T Consensus 761 ---------------------epv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG--~NRq~l~~~q~l~~~~~~~~~ 817 (3550)
T KOG0889|consen 761 ---------------------EPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGG--RNRQFLKRPQDLEEIDEDDID 817 (3550)
T ss_pred ---------------------HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC--cchhhcccccccccccCcccc
Q ss_pred -----------------hhhhhHHHHHhhc--CCCHHHHHHHHHHHHHHHHhhCcCc--hHHHHHHHHHHhhc-------
Q 000098 1617 -----------------IGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKS------- 1668 (2256)
Q Consensus 1617 -----------------l~~Ll~~L~~~L~--d~~~~VR~~a~~aL~~L~~~~g~~~--~~~lip~Ll~~L~~------- 1668 (2256)
+.+.+..-..++. ..++..|..+...+.......-... +..-...+......
T Consensus 818 ~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~e 897 (3550)
T KOG0889|consen 818 IRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVNLSADFKSSIRQLLTLVVWSIDLRLE 897 (3550)
T ss_pred ceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhcchHHHhhH
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH
Q 000098 1669 -------------DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2256)
Q Consensus 1669 -------------~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl 1735 (2256)
.....+|..-..++..++.+.....+...-..++..+ +|..++.+........+-.-....
T Consensus 898 ~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~i------l~~f~~~~~~~~~~~~~~~~~~~~ 971 (3550)
T KOG0889|consen 898 CCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAI------LRHFALHGVVLYTGSNQLKHSNFG 971 (3550)
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHH------HHHHHHHHHHHhhcchhccccccc
Q ss_pred HH-----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----------hhccchhchHHHHHhhcCCCCHHHHH
Q 000098 1736 QQ-----------VLPAILDGLADENESVRDAALGAGHVLVEH-----------YATTSLPLLLPAVEDGIFNDNWRIRQ 1793 (2256)
Q Consensus 1736 ~~-----------ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~-----------~~~~~~~~llp~L~~~l~d~~~~iR~ 1793 (2256)
.. +++.|...+..++..++.+...++..+... +.-..+..+++.+.....++.|.-|.
T Consensus 972 ~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~ 1051 (3550)
T KOG0889|consen 972 SNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKD 1051 (3550)
T ss_pred cccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHc
Q ss_pred HHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHH----HHHHHHH
Q 000098 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ----AALHVWK 1869 (2256)
Q Consensus 1794 ~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~----aA~~~l~ 1869 (2256)
+.+..++.+. ..+...---++..+++.+++..+.|...++.. .+-..+.
T Consensus 1052 gG~~gI~~l~---------------------------~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~ 1104 (3550)
T KOG0889|consen 1052 GGVNGIKCLI---------------------------ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILM 1104 (3550)
T ss_pred CCCceeeeeh---------------------------hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHH
Q ss_pred HHHhcC------hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-------chhch-HHHHhhhcCCC
Q 000098 1870 TIVANT------PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-------VLPSI-IPILSRGLKDP 1935 (2256)
Q Consensus 1870 ~l~~~~------~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~l-lp~L~~~l~d~ 1935 (2256)
.+...+ ...-......++..+...+.+++..+|..+..+|..+.+..|.. +.+-+ .|....-+..-
T Consensus 1105 ~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~ 1184 (3550)
T KOG0889|consen 1105 DILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRAL 1184 (3550)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccC
Q ss_pred ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
......|...++...+.....-.-..-.-..+-.....+.|.+ ..+.++ +.+...........+.
T Consensus 1185 p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~------~~~~~~-i~k~~~~k~~~~l~~L-------- 1249 (3550)
T KOG0889|consen 1185 PFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAE------EDELAT-IQKTSDYKNSSSLVRL-------- 1249 (3550)
T ss_pred CHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhh------hhhhhh-hhcccccccccccccc--------
Q ss_pred CchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhC------CCccccHhhHHHHHHHhhCCCCHH
Q 000098 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG------PGLNFHLGTILPALLSAMGDDDMD 2089 (2256)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g------~~l~~~l~~Ilp~Ll~~l~~~~~~ 2089 (2256)
...++..++.+.- +...++-..|+..+++.+..+..+
T Consensus 1250 -------------------------------------r~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~E 1292 (3550)
T KOG0889|consen 1250 -------------------------------------RVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSE 1292 (3550)
T ss_pred -------------------------------------hhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHH
Q ss_pred HHHHHHHHHHHHHh---hcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHcCCC
Q 000098 2090 VQSLAKEAAETVTL---VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDS 2165 (2256)
Q Consensus 2090 vr~~a~~al~~l~~---~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~-y~~~il~~L~~~l~D~ 2165 (2256)
+.+.+..++..+.. .++.+.++..+..++..+.|-.- .-....+.++.+.+-...-+.. +...++..+-..++|.
T Consensus 1293 i~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~ 1371 (3550)
T KOG0889|consen 1293 LIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNN-LSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLEDE 1371 (3550)
T ss_pred HHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Q ss_pred ChHHHHHHHHH
Q 000098 2166 DSTTVAAAWEA 2176 (2256)
Q Consensus 2166 d~~Vr~~A~~a 2176 (2256)
..+-...++.+
T Consensus 1372 ~~~y~~~~l~~ 1382 (3550)
T KOG0889|consen 1372 VLDYLSGALKA 1382 (3550)
T ss_pred HHHHHhhhhcc
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.43 Score=52.79 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHhccCCCHHHHHHHHHHHHHh---Hhhh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYL---PRSL 1727 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~l~~~~~~vR~~al~~l~~L---a~~~ 1727 (2256)
+..++|.+++.|...+.+ -|.-|.+++.+++...|.+.+ .+++..+.+.+++.++.|...++.++..+ ....
T Consensus 36 y~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 567888888888874444 678888899999888555544 55566666788889999999999999999 7888
Q ss_pred ChhHHHHHHHHHHHHHHhcC------C-----CCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1728 GVQFQNYLQQVLPAILDGLA------D-----ENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1728 g~~f~~yl~~ilp~Ll~~L~------d-----~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
|+.+.||+.+++|.+--..+ | ....+++...+++..+-++-|++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 99999999999998872221 1 12345555556666554444443
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.52 E-value=23 Score=46.67 Aligned_cols=314 Identities=13% Similarity=0.085 Sum_probs=159.5
Q ss_pred hHhhHHhHHHHHHHhcc--------CCChhHHHHHHHHHHHHHhh--ChhhHhhhhh-hHHHHHHHhhcCCCHHHHHHHH
Q 000098 1452 SAQGVKLVLPSLLKGLE--------DKAWRTKQSSVQLLGAMAYC--APQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQ 1520 (2256)
Q Consensus 1452 ~~~~v~~ilp~Ll~~L~--------~~~w~~R~~a~~~Lg~la~~--~p~~l~~~L~-~Ivp~L~~~L~D~~~~VR~aA~ 1520 (2256)
+.+.+..+++.+...+. .++.+...+|+..+..+..- -+......+. -|++.+.+.++++.--.|..||
T Consensus 402 ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 402 KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence 33445677777776662 14677788899998888772 2333333333 3667788888999999999999
Q ss_pred HHHHHHHhhcCchhH-HhHHHHHHhhhCCCChhHH-H---HHHHHHhcccccCCChhhHhhHHHHHHHhhc---CCCHHH
Q 000098 1521 TALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-Y---SLDILLQTTFVNTVDAPSLALLVPIVHRGLR---ERSAET 1592 (2256)
Q Consensus 1521 ~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~~~~vr-~---al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~---d~~~~v 1592 (2256)
..+..+...+.++.+ ..+.....+++.+.+--++ + |++.++...-.| ....+.+.+.+.+.|. +-+.+.
T Consensus 482 e~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h---~k~sahVp~tmekLLsLSn~feiD~ 558 (970)
T COG5656 482 EFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSH---EKFSAHVPETMEKLLSLSNTFEIDP 558 (970)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhh---HHHHhhhhHHHHHHHHhcccccchH
Confidence 999999888877644 5667777777777544343 2 344443211111 1122223333333332 222232
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHH----hhc----CC---CHHH---HHHHHHHH---HHHHHhhCcCch
Q 000098 1593 KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK----VLV----DP---IPEV---RSVAARAI---GSLIRGMGEENF 1655 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~----~L~----d~---~~~V---R~~a~~aL---~~L~~~~g~~~~ 1655 (2256)
-.. ++..+.+.. +.++.||.++++..+.+ +.. .+ ...+ +.+|...+ ..+.-.+. ..
T Consensus 559 LS~---vMe~fVe~f--seELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle--n~ 631 (970)
T COG5656 559 LSM---VMESFVEYF--SEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE--NR 631 (970)
T ss_pred HHH---HHHHHHHHh--HHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc--cc
Confidence 222 223333321 13466777777665554 221 11 1111 22222222 22222222 22
Q ss_pred HHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHHHHHhc--HhHHHHHHHHHHHhccC----CCH-HHHHHHHHHH
Q 000098 1656 PDLVSWLLDAL--------KSDNSNVERSGAAQGLSEVLAALG--TVYFEHILPDIIRNCSH----QRA-SVRDGYLTLF 1720 (2256)
Q Consensus 1656 ~~lip~Ll~~L--------~~~~~~~~R~~aa~~L~~i~~~~g--~~~l~~ll~~ll~~l~~----~~~-~vR~~al~~l 1720 (2256)
+.++..+...+ +++... .-. ...+++.++. ...+.++++.+.+.+.+ +.. .--+.+..++
T Consensus 632 p~vLk~le~slypvi~Filkn~i~d-fy~----Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al 706 (970)
T COG5656 632 PLVLKYLEVSLYPVISFILKNEISD-FYQ----EALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADAL 706 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHH-HHH----HHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHH
Confidence 33333333222 221111 111 1222333221 11235666666665443 221 2234455566
Q ss_pred HHhHhhhChhHH---HHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhhccchhchHHHH
Q 000098 1721 KYLPRSLGVQFQ---NYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSLPLLLPAV 1780 (2256)
Q Consensus 1721 ~~La~~~g~~f~---~yl~~ilp~Ll~~L~d~~~--~VR~~Al~al~~iv~~~~~~~~~~llp~L 1780 (2256)
..+....+.+|. .|..-+.......+..++. +=+..+++....++-+++++..++.+|.+
T Consensus 707 ~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plf 771 (970)
T COG5656 707 DNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLF 771 (970)
T ss_pred HHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHH
Confidence 666555554442 3555556666666666644 33556777777777777776666556644
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.4 Score=53.57 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhCc-----c----------
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSSSERRQVAGRALGELVRKLGE-----R---------- 1919 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~---L~~~~~~~R~~A~~aL~~lv~~~~~-----~---------- 1919 (2256)
...|.+|...+..++.+.+....+++...++.++.. -.+.+|..+..|...++.++.+... .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 457899999999998877766666665555555432 1345788899999999999864411 1
Q ss_pred -chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000098 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2256)
Q Consensus 1920 -~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al 1989 (2256)
+...++|-|. .-.+..|-.|..+|..+...-...++ +.+..++|.+..++.+++.-|+.-|+.|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1244455555 11233567788888877766554443 45677999999999999999998888663
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.1 Score=59.06 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=89.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh----
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---- 1454 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---- 1454 (2256)
-+..+.+.+..++-... + +...+..+......--..++..+.+.+.......++.+|.+|.-+++.+....-..
T Consensus 396 av~~i~~~I~~~~~~~~-e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-E-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-H-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHcCCCCHH-H-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 34455556655422211 1 22333333333222123344444444332222356789999988888877653322
Q ss_pred ---------hHHhHHHHHHHhc----cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCC---CHHHHHH
Q 000098 1455 ---------GVKLVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSA 1518 (2256)
Q Consensus 1455 ---------~v~~ilp~Ll~~L----~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~---~~~VR~a 1518 (2256)
..+.+++.+...+ ...+-..+..++.+||.+.. +.+++.+...+.+. ...+|.+
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1234455554444 45666788889999998743 46677777777765 7889999
Q ss_pred HHHHHHHHHhhcCchhHHhHHHHHHhhhCCCCh--hHH-HHHHHHHh
Q 000098 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQ 1562 (2256)
Q Consensus 1519 A~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~--~vr-~al~~L~~ 1562 (2256)
|++||..+....+ ..+.+.++....|+.+ .+| .|+..|..
T Consensus 544 Ai~Alr~~~~~~~----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 544 AIQALRRLAKHCP----EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHTTTTGGGT-H----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCc----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 9999998865442 2334445555555543 456 45555543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.34 E-value=25 Score=46.23 Aligned_cols=210 Identities=19% Similarity=0.121 Sum_probs=137.2
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
.++.++..+.++...++..||..+++++..+........ ....+.+...+..-+.|..|.||..|..||..+-..-++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid--d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID--DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC--HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 455667778888888899999999999988876322211 234567777888888899999999999999988753333
Q ss_pred CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH
Q 000098 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1653 ~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~ 1732 (2256)
+. -++...+...+++|+++++|+.+...++.= ...+|.++....|.+..+|..+..- +...+.-.+
T Consensus 160 ee-~~v~n~l~~liqnDpS~EVRRaaLsnI~vd---------nsTlp~IveRarDV~~anRrlvY~r---~lpkid~r~- 225 (892)
T KOG2025|consen 160 EE-CPVVNLLKDLIQNDPSDEVRRAALSNISVD---------NSTLPCIVERARDVSGANRRLVYER---CLPKIDLRS- 225 (892)
T ss_pred Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhhccC---------cccchhHHHHhhhhhHHHHHHHHHH---hhhhhhhhh-
Confidence 32 357778888899999999999876654321 3456778888888877777754332 121221111
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1733 NYLQQVLPAILDGLADENESVRDAALGAGHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~-iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
--++.-+-.+-.++.|.+..|+.++.+++.. ....... .++..|.+.-.+.+.+++..+++.+=..
T Consensus 226 lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dg----ni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 226 LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDG----NILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccc----cHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1223445566678999988999887776432 2222111 1333333333344447887777766543
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.52 Score=58.92 Aligned_cols=87 Identities=28% Similarity=0.376 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc----------CCCHHHHHHHHHHHHHHHHhhCcCc---hHHHHHHHH
Q 000098 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2256)
Q Consensus 1597 ~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~----------d~~~~VR~~a~~aL~~L~~~~g~~~---~~~lip~Ll 1663 (2256)
..++..|.. +..-.+.+|+..++|.++.++. +.+|.+|+.|+..++.+++.++..| .+.++..+.
T Consensus 238 m~~v~ALl~--N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~ 315 (343)
T cd08050 238 MRMVRALLD--NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLL 315 (343)
T ss_pred HHHHHHHhc--CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 344444544 3335678999999999998872 4679999999999999999998763 234444555
Q ss_pred HHhhcCCC-HHHHHHHHHHHHHH
Q 000098 1664 DALKSDNS-NVERSGAAQGLSEV 1685 (2256)
Q Consensus 1664 ~~L~~~~~-~~~R~~aa~~L~~i 1685 (2256)
+.+.+... ....-||..+++.+
T Consensus 316 k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 316 KALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHcCCCCCcchhhHHHHHHHHh
Confidence 55554333 33467777777654
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.37 Score=53.31 Aligned_cols=116 Identities=10% Similarity=0.082 Sum_probs=86.6
Q ss_pred HhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhc-ch---hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHH---HHhch
Q 000098 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYF---YKNSK 2144 (2256)
Q Consensus 2072 l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~-~~---~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l---~~~~~ 2144 (2256)
++..+|.+++.+...++..|-.|...+.+++... ++ +.++.++..|...+.+.++++...++.++..+ ....|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567889999998888888999999999999883 22 45677777888889999999999999999999 55678
Q ss_pred hhhhhhHHHHHHHHHHHcCC-----------CChHHHHHHHHHHHHhhccCCCC
Q 000098 2145 LYLVDEAPNMISTLIVLLSD-----------SDSTTVAAAWEALSRVVASVPKE 2187 (2256)
Q Consensus 2145 ~~~~~y~~~il~~L~~~l~D-----------~d~~Vr~~A~~aL~~l~~~l~~e 2187 (2256)
..+.||+.++++.+-...+. .+..+++...++|..+-+..++|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 88999999998877532221 12345555555555555444444
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.01 E-value=25 Score=50.27 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=102.6
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLC--EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~--~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~ 1455 (2256)
.++..+.+...+...|++|-+.+..+.... ..++ ..++...++-..+...+.|.+-.||+.|+.++.-++.---...
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 677777766677778999998777665543 2233 4567777888888899999999999999999887764211111
Q ss_pred HHhHHHHHHHhcc--CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1456 VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1456 v~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
+............ ..+.-..++|+..||+++-..|-.+...+|..+..+....+++ .-++.++-+++..|-..-
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 1111122222222 3445567899999999999988876666666666655555665 667888888888776543
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.42 Score=53.42 Aligned_cols=136 Identities=24% Similarity=0.316 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhhhHH------------HHHhhcCCCHHHHHHHHHHHHHHHHhhC--------
Q 000098 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE------------VKKVLVDPIPEVRSVAARAIGSLIRGMG-------- 1651 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~------------L~~~L~d~~~~VR~~a~~aL~~L~~~~g-------- 1651 (2256)
+|..|..++..+++. .+++.+-.|++.++|. +..++.|+++++|..|+.++..+.++..
T Consensus 2 vR~~Al~~L~al~k~-~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKS-TDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHh-cCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 678888888888884 3667777777776663 3444679999999999999999877531
Q ss_pred ---cC-ch-----------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHH
Q 000098 1652 ---EE-NF-----------PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRAS 1711 (2256)
Q Consensus 1652 ---~~-~~-----------~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~ 1711 (2256)
+. .| -++-..|+..|..+.+.........+++.++....-+ .+..++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 11 1233445556666666666677778888888765544 4566667777778889999
Q ss_pred HHHHHHHHHHHhHhhhC
Q 000098 1712 VRDGYLTLFKYLPRSLG 1728 (2256)
Q Consensus 1712 vR~~al~~l~~La~~~g 1728 (2256)
+|..++.+++.+..+.+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=16 Score=54.76 Aligned_cols=279 Identities=11% Similarity=0.056 Sum_probs=155.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-------chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-
Q 000098 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV- 1692 (2256)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-------~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~- 1692 (2256)
-+.+...-.+++..++..|...|..++..+-+. +-.+++..+...+.+.....+|.....++..++...+..
T Consensus 1139 ~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI 1218 (1780)
T PLN03076 1139 SDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV 1218 (1780)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444556778888888887877655321 234678878777777677789999999999999887754
Q ss_pred --HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH----HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Q 000098 1693 --YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF----QNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1693 --~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f----~~yl~~ilp~Ll~~L~d~-~~~VR~~Al~al~~iv 1765 (2256)
.++.++..+-....+.++.+-..++..+..+...+-..+ ...+..++..+....... +.++-..|+..++.+.
T Consensus 1219 kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1219 KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 345666666555566666666666666665543211100 012233444444333322 2344444555555432
Q ss_pred HHhhcc------------------------------------chhc---hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 000098 1766 EHYATT------------------------------------SLPL---LLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2256)
Q Consensus 1766 ~~~~~~------------------------------------~~~~---llp~L~~~l~d~~~~iR~~sv~llg~ll~~~ 1806 (2256)
..+... .... ++-.+.+...|+...||..|++.+=+++..+
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 222100 0011 2233334455777788888888887766332
Q ss_pred cCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc-----------------------CCcHHHHHH
Q 000098 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-----------------------DVSLSVRQA 1863 (2256)
Q Consensus 1807 ~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~-----------------------D~~~~Vr~a 1863 (2256)
++. +.. ..+..+ +..++-.++.... |....+.++
T Consensus 1379 G~~--------------Fs~-~~W~~i--------f~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT 1435 (1780)
T PLN03076 1379 GHL--------------FSL-PLWERV--------FESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYET 1435 (1780)
T ss_pred hcc--------------CCH-HHHHHH--------HHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHH
Confidence 110 000 011111 1122222222210 111123455
Q ss_pred HHHHHHHHHh---cChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchh
Q 000098 1864 ALHVWKTIVA---NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2256)
Q Consensus 1864 A~~~l~~l~~---~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~ 1922 (2256)
...++..++. +.-..+..+++.++..+..+...++...-..+..||..++...|..+-+
T Consensus 1436 ~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1436 CTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 5555544443 3335567788888888888888899999999999999999888876543
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.7 Score=50.27 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHH-HhcCCC-----HHHHHHHHHHHHHHHHhhCccc---hhchHHHHhhhcCCC--ChhhHHhHHH
Q 000098 1877 KTLKEIMPVLMNTLIS-SLASSS-----SERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDP--SASRRQGVCI 1945 (2256)
Q Consensus 1877 ~~l~~~l~~Ll~~L~~-~L~~~~-----~~~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~l~d~--~~~vR~~a~~ 1945 (2256)
+.+.+++|.++..++. .+++.. +.+|..|+..++-++..++..+ -|.+..++.+.+-|. ...+..|+..
T Consensus 273 PY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalk 352 (450)
T COG5095 273 PYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALK 352 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhh
Confidence 4455555555555543 444332 3489999999999999888764 467777666655443 3457788888
Q ss_pred HHHHH
Q 000098 1946 GLSEV 1950 (2256)
Q Consensus 1946 aL~ei 1950 (2256)
++..+
T Consensus 353 gls~l 357 (450)
T COG5095 353 GLSIL 357 (450)
T ss_pred hhhhh
Confidence 77643
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.7 Score=55.06 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=69.0
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHhhCccc---hhchHHHHhhhc
Q 000098 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGL 1932 (2256)
Q Consensus 1866 ~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~----------~~~~~~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~l 1932 (2256)
.+..++..|..-.+.+|+..|++.++.++- +.+|.+|..|+..++.+|+.++..+ .+.+..++.+.+
T Consensus 269 ~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 269 RMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKAL 348 (576)
T ss_pred HHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 344455555544455555555555544432 3468899999999999999988764 467777788877
Q ss_pred CCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHh
Q 000098 1933 KDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2256)
Q Consensus 1933 ~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L 1974 (2256)
.|+ .....+|++.+|.++....-...+.|.+......+...+
T Consensus 349 ~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 349 LDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred cCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 776 467889999888877543222223344444444444333
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.72 E-value=34 Score=45.63 Aligned_cols=302 Identities=16% Similarity=0.152 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC--------CHHH-HHHHHHHHHHHHHhhCcc------chh
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS--------SSER-RQVAGRALGELVRKLGER------VLP 1922 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~--------~~~~-R~~A~~aL~~lv~~~~~~------~l~ 1922 (2256)
..+|.+|-..+..+..+.... ++|.+++.+-+..... +.-. +.+.-.++|.-.-.+... ...
T Consensus 411 y~lRPCaE~L~~~lF~~ysql---lvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~ 487 (978)
T KOG1993|consen 411 YNLRPCAEKLYKDLFDAYSQL---LVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQE 487 (978)
T ss_pred eccchhHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 448888888888777655444 3444444443222221 1112 233333444333332221 224
Q ss_pred chHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh--chh
Q 000098 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSA--GMQ 1999 (2256)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~-~~~VR~~A~~al~~l~~~~--g~~ 1999 (2256)
.++|.+.. -.+...-.|..+++-+++.+..--+..+. +-+...+...+.|. |.-||-+++.++...++.. ..+
T Consensus 488 ~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k---~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 488 ALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQKLELK---PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred hhCHHhhh-cccchhHHHHHHHHHHhhhhheechHhHH---HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 44554441 11223446778888888887643332222 33455556677777 6778999999998887642 334
Q ss_pred hHHhHHHHHHH----hhcc---CCchHHHHHHHHHHHhhhcccchh------hhhhhhhcCchh-----hhHHHHHHHHH
Q 000098 2000 AIDEIVPTLLH----ALED---DQTSDTALDGLKQILSVRTTAVLP------HILPKLVHLPLS-----AFNAHALGALA 2061 (2256)
Q Consensus 2000 ~~~~ilp~Ll~----~L~~---~~~~~~al~~L~~il~~~~~~~lp------~li~~L~~~p~~-----~~~~~aL~~La 2061 (2256)
.+-.++|.+.. .+.. -+.+-..+.-+..++..-+..+-| ..+|.++..... .....++..++
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 44444444333 2322 122234444444444332222223 235666654322 23355677788
Q ss_pred HHhCCCccccHhhHHHHHHHhhCCCC---HHHHHHHHHHHHHHHhhcch--hcHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 000098 2062 EVAGPGLNFHLGTILPALLSAMGDDD---MDVQSLAKEAAETVTLVIDE--EGVESLVSELLKGVGDNQASIRRSSAYLI 2136 (2256)
Q Consensus 2062 ~~~g~~l~~~l~~Ilp~Ll~~l~~~~---~~vr~~a~~al~~l~~~~~~--~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l 2136 (2256)
...|..-.+..+-++|.+--....+. --.-+.+.+.....+..... +.+-.++|.++..+.-.... -..++..+
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~-L~t~l~Ii 722 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTEN-LPTVLMII 722 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhh-HHHHHHHH
Confidence 88888766777767777665553322 22345566666666665532 45566777777777543322 33445555
Q ss_pred HHH-HHhchhhhhhhHHHHHHHHHHHcCCCCh
Q 000098 2137 GYF-YKNSKLYLVDEAPNMISTLIVLLSDSDS 2167 (2256)
Q Consensus 2137 ~~l-~~~~~~~~~~y~~~il~~L~~~l~D~d~ 2167 (2256)
... .-..+.-...|...+...+...++|-..
T Consensus 723 ~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~ 754 (978)
T KOG1993|consen 723 SSYILLDNTVFLNDYAFGIFKKLNDLLDDVRN 754 (978)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 433 3334445666777777777777765433
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=93.30 E-value=1 Score=50.39 Aligned_cols=136 Identities=24% Similarity=0.266 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHH-hccCchHhHHHHHHHH-----------H-HHcCCCcHHHHHHHHHHHHHHHhhhhHhh-----
Q 000098 1394 KRREGALLAFECLCEK-LGRLFEPYVIQMLPLL-----------L-VAFSDQVVAVREAAECAARAMMSQLSAQG----- 1455 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~-l~~~~~pyv~~llp~l-----------l-~~l~D~~~~VR~aa~~al~~l~~~l~~~~----- 1455 (2256)
++|.+|+.++..+++. .++.|-.|...++|.- + -.+.|+++.||.+|+.++..+......+-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3689999999999999 5578888988887643 2 34679999999999999988775432210
Q ss_pred ------------------HHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhh--HhhhhhhHHHHHHHhhcCCCHH
Q 000098 1456 ------------------VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPK 1514 (2256)
Q Consensus 1456 ------------------v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~--l~~~L~~Ivp~L~~~L~D~~~~ 1514 (2256)
+..+-..++..+. +.+...-...++++..+....|-. -...++.++..+...+.+.++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1112223333343 345555666788888888776632 2345677888888888899999
Q ss_pred HHHHHHHHHHHHHhh
Q 000098 1515 VQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1515 VR~aA~~aL~~l~~~ 1529 (2256)
||.++..+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988764
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.7 Score=50.29 Aligned_cols=156 Identities=17% Similarity=0.255 Sum_probs=93.0
Q ss_pred HHhHHhh-cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH-----hCCCCHHHHHH
Q 000098 1325 SPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREG 1398 (2256)
Q Consensus 1325 ~~lv~~~-~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l-----~~~~~~~~Re~ 1398 (2256)
.+++++. .....-++++....|.++.+...|.+|..+|. ...|.. .++|+..+.+ ++-+|-..--.
T Consensus 184 KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr---~dsGlh-----QLvPYFi~f~~eqit~Nl~nl~~LtT 255 (450)
T COG5095 184 KPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLR---NDSGLH-----QLVPYFIHFFNEQITKNLKNLEKLTT 255 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccHH-----HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3444433 34566777888888877766778887776664 222221 3334333322 22223333333
Q ss_pred HHHHHHHHHHHhccCchHhHHHHHHHHHHHc-----C-CCcH----HHHHHHHHHHHHHHhhhhHhh--H-HhHHHHHHH
Q 000098 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----S-DQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLK 1465 (2256)
Q Consensus 1399 al~al~~L~~~l~~~~~pyv~~llp~ll~~l-----~-D~~~----~VR~aa~~al~~l~~~l~~~~--v-~~ilp~Ll~ 1465 (2256)
.++.+..+.....-.++||+.+++|.++.|+ + ++++ .+|+-|+..++.++++++... . +.+...+++
T Consensus 256 v~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllK 335 (450)
T COG5095 256 VVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLK 335 (450)
T ss_pred HHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHH
Confidence 4444444444434456899999999998875 2 2322 489999999999988887532 2 344555555
Q ss_pred hcc--CCChhHHHHHHHHHHHHHhh
Q 000098 1466 GLE--DKAWRTKQSSVQLLGAMAYC 1488 (2256)
Q Consensus 1466 ~L~--~~~w~~R~~a~~~Lg~la~~ 1488 (2256)
..- .....+..+|+.++..+...
T Consensus 336 afLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 336 AFLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHHhcccccchhhhhhhhhhhhchh
Confidence 443 34566788888888766554
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.81 Score=50.46 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=88.4
Q ss_pred hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhh-hCCCChhHHHHHHHHHhcccccCCChh
Q 000098 1496 CLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMG-LTDPNDHTKYSLDILLQTTFVNTVDAP 1572 (2256)
Q Consensus 1496 ~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~-l~d~~~~vr~al~~L~~~~~~~~~~~~ 1572 (2256)
.+|++++.+.+.++ +.++.+|.++.+.||.+|.. +|+. +.+....-.. ..+.+...... .+.........++-
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSNDESTDI--SLPMMGISPSSEEY 82 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccccchhh--HHhhccCCCchHHH
Confidence 35788888888885 55699999999999999854 3432 1111000000 00001111100 00000111112223
Q ss_pred hHhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1573 SLALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~-~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
.....+..+.+.++|++- .-...+.+++.++.+..+. + ..+|+++++|.+...+.......|+....-++.++.-
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~-~-cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL-K-CVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-C-chhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344566677778887653 3344566777777764333 3 3899999999999999987779999888888887753
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=36 Score=44.55 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=92.0
Q ss_pred HHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-----HHHHH---HHHHHHhcCCCHHHHHHHHHHHHHHHhhh----Cc
Q 000098 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVS---RLLDQLMKSDKYGERRGAAFGLAGVVKGF----GI 1371 (2256)
Q Consensus 1304 ~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~~l~---~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~----g~ 1371 (2256)
.++.+|..++..||..++..+..+.+..+++. ..+++ ..+..|..++-+++|..|..++..+...+ ++
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 35567777777888777666555555444332 22222 23455667777899999988887776543 22
Q ss_pred ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000098 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2256)
Q Consensus 1372 ~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l 1447 (2256)
..+. +++..+..-+..+....+|-....++..+..... --+.+.+++|.+-..+.|.+..||-++.+.+-.+
T Consensus 258 ~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 258 TILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 2222 4555555555555556788777777776665432 2566788899888889999999999988777655
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.97 Score=60.51 Aligned_cols=151 Identities=20% Similarity=0.292 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHhhC--c
Q 000098 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN-TLISSLAS---SSSERRQVAGRALGELVRKLG--E 1918 (2256)
Q Consensus 1845 vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~-~L~~~L~~---~~~~~R~~A~~aL~~lv~~~~--~ 1918 (2256)
+++.+...++.+..++|..-+-+|..+....+..-.+++..--. ..+..+.+ -+++.|.+|+-.|+.+++.+. .
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 33444455667777788888888888776555443343332000 00011122 246899999999999998653 3
Q ss_pred c--chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000098 1919 R--VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2256)
Q Consensus 1919 ~--~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~ 1995 (2256)
. ....++......++|+ .+-.||-+|.+||.+-+........-.-..-...+...+.|+.++||.+|..|||++...
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 2 3466777777888874 688999999999988776554333222233455667788999999999999999999875
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.42 Score=47.06 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchH
Q 000098 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2256)
Q Consensus 2114 l~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv 2193 (2256)
+...+..+.|+.+.+|..++..+..+++... ......+.++..++..+.|+|.-|--+|..+|+.++...|.+.++.++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 4556667789999999999999999998655 233356888999999999999999999999999999888877666655
Q ss_pred HH
Q 000098 2194 KV 2195 (2256)
Q Consensus 2194 ~~ 2195 (2256)
..
T Consensus 84 ~~ 85 (92)
T PF10363_consen 84 DE 85 (92)
T ss_pred HH
Confidence 43
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.71 Score=50.94 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=85.5
Q ss_pred hhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh---cHh-
Q 000098 1618 GLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV- 1692 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~---g~~- 1692 (2256)
|.|++.+..++. +.++.+|..+.+++|.++. +.+..+.. ........ ....-............+. ..+
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~----~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKS----IQKSLDSK-SSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhc----ccccCCcc-ccccccccchhhHHhhccCCCchHHH
Confidence 578888888886 4579999999999998873 32211111 10000000 0000000000111111111 122
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1693 YFEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1693 ~l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
+..-.+..++..++|+. ..-...++.++.++.+..|....+|+++++|.++..+....+..|+....-+..++.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 23445666777777762 334456777888888888888899999999999999997777888877666665543
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=92.78 E-value=13 Score=48.26 Aligned_cols=240 Identities=18% Similarity=0.237 Sum_probs=113.8
Q ss_pred CcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhh----cCCCHHHHHHHHHHHH
Q 000098 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLS 1683 (2256)
Q Consensus 1611 ~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~----~~~~~~~R~~aa~~L~ 1683 (2256)
.++.|+.+.++..|+..+..+...--+..++|+-.+....++. +...+++.|...+. +..++.--.....+++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 5678888999999988886432222233455555555444443 34455555555443 3334434445556677
Q ss_pred HHHHHhcHh------HH-HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcC-CCCHHHHH
Q 000098 1684 EVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRD 1755 (2256)
Q Consensus 1684 ~i~~~~g~~------~l-~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~-d~~~~VR~ 1755 (2256)
.+++..... .+ +.++|.+.. +-..--.+|.||.=+++..+++.-. ++-
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~-------------------ILq~dV~EF~PYvfQIla~Lle~~~~~~~----- 153 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQE-------------------ILQQDVQEFIPYVFQILAQLLELRPSSPL----- 153 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHH-------------------HHHTT-TTTHHHHHHHHHHHHHHSS--S------
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----
Confidence 666654322 11 222333322 2222234677887777777766544 111
Q ss_pred HHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHH---HHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHH
Q 000098 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR---QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRA 1832 (2256)
Q Consensus 1756 ~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR---~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~ 1832 (2256)
++.+..++|.+..- .-|.-| -+.+.++..++.+.+..-. ....
T Consensus 154 --------------p~~y~~L~~~Ll~p---~lWe~~gniPalvrLL~a~i~k~~~~i~-----------------~~~~ 199 (435)
T PF03378_consen 154 --------------PDAYKQLFPPLLSP---ALWERRGNIPALVRLLQAYIKKDPSFIV-----------------ANNQ 199 (435)
T ss_dssp ---------------TTTGGGHHHHTSG---GGGGSTTTHHHHHHHHHHHHHHHGGG---------------------S-
T ss_pred --------------cHHHHHHHHHHcCc---chhccCCCcCcHHHHHHHHHHhCchhhc-----------------chhh
Confidence 11233355555422 223321 2333444444433111000 0011
Q ss_pred HHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 000098 1833 IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASS-SSERRQVAGRALG 1910 (2256)
Q Consensus 1833 l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~-~l~~~l~~Ll~~L~~~L~~~-~~~~R~~A~~aL~ 1910 (2256)
+..++| +...|...+... ..+..++..++.+.|. .+.++++.++..+..++.++ .......-...++
T Consensus 200 l~~iLg------vFQkLi~sk~~D-----~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~ 268 (435)
T PF03378_consen 200 LEPILG------VFQKLIASKAND-----HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLS 268 (435)
T ss_dssp CHHHHH------HHHHHHT-TTCH-----HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHCCCCcc-----hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 122232 222222222211 3356788888888886 68999999999999888743 3333333334444
Q ss_pred HHHHhhCcc
Q 000098 1911 ELVRKLGER 1919 (2256)
Q Consensus 1911 ~lv~~~~~~ 1919 (2256)
-++-+.|.+
T Consensus 269 ~~~~~~g~~ 277 (435)
T PF03378_consen 269 LFAIKYGPD 277 (435)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHcCHH
Confidence 444444443
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.72 E-value=7.9 Score=48.83 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=66.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHH----hhChhhhHhhHhhHHHHH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~----~~~~~~l~~~l~~li~~l 1970 (2256)
.+.++........+|+..+..++...-+.++..+..++.+..+.+|..-+.++++.+. ........++++.++..+
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 4678888999999999999888777778899999999999988899999999998886 222333445566666666
Q ss_pred HHHhcCCCHH
Q 000098 1971 RTALCDSILE 1980 (2256)
Q Consensus 1971 ~~~L~D~~~~ 1980 (2256)
.+....+.+.
T Consensus 113 ~~~~~~p~~~ 122 (339)
T PF12074_consen 113 KEASANPLQS 122 (339)
T ss_pred HHHHhCCCCc
Confidence 6666666544
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.59 E-value=46 Score=43.96 Aligned_cols=288 Identities=15% Similarity=0.086 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D 1431 (2256)
-..|..|+..|...++....+... .+.......+..++....|+.++..+..+.+.-+.....--..+...+...-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 456777777777777766554433 455555556666666677777777777776654331111111122222222222
Q ss_pred CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCC---------------------------ChhHHHHHHHHHHH
Q 000098 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2256)
Q Consensus 1432 ~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~R~~a~~~Lg~ 1484 (2256)
++-..|-.+..+|..=.+.+.. -...+.|.+...+..- +-+.=..-+..+..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2333343333333222222211 0122333333222100 00000011222222
Q ss_pred HHhhChhhH-hhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHh--hcCchhHHhHHHHHHhhhCCCC--hhHHHHHH
Q 000098 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKYSLD 1558 (2256)
Q Consensus 1485 la~~~p~~l-~~~L~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~Ll~~l~d~~--~~vr~al~ 1558 (2256)
+...-...+ ...+..++..++..+.. +.+..-.++...+..+.. .+++..+..++..|.....-.+ +..-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 222211111 12334555555555433 233333556666666554 2344456667777766544331 12223444
Q ss_pred HHHhcccccCCChhhHhhHHHHHHHhhc------CCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhh--hhhHHHHHhhc
Q 000098 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIG--LLLPEVKKVLV 1629 (2256)
Q Consensus 1559 ~L~~~~~~~~~~~~~l~~i~p~L~~~L~------d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~--~Ll~~L~~~L~ 1629 (2256)
.|..... -...+-.+...+. .++..+-+.|..+++.+.-..+ .+.+.. ... .+++.+...++
T Consensus 241 nL~~S~~--------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~-~~~~~~l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 241 NLLKSHL--------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG-EQGYPSLPFSPSSVLPSLLNALK 311 (464)
T ss_pred HHHcCcc--------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc-cCCcceecccHHHHHHHHHHHHh
Confidence 4443111 1123344444442 2345566677777777664221 122111 122 38999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HhhC
Q 000098 1630 DPIPEVRSVAARAIGSLI-RGMG 1651 (2256)
Q Consensus 1630 d~~~~VR~~a~~aL~~L~-~~~g 1651 (2256)
.+++.|-......+..+. ..++
T Consensus 312 ~~~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 312 SNSPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred CCCCeehHHHHHHHHHHHhHhhh
Confidence 777777666666666666 4443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=92.51 E-value=28 Score=44.62 Aligned_cols=261 Identities=17% Similarity=0.138 Sum_probs=136.1
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhcCch--hH-H
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP--EI-A 1536 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~~L~~Ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~--~i-~ 1536 (2256)
.++..+..++|.+...++.++..++...+... ...++.+++-+...+..+ +...+..|..++..+...-.-. .. .
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 34446667899999999999998886654321 123334555555566533 3566667778888776532111 11 2
Q ss_pred hHHHHHHhhhCCCChhHHHHHHHHHh---cccccCCC-hhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCC-
Q 000098 1537 SLVPTLLMGLTDPNDHTKYSLDILLQ---TTFVNTVD-APSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEP- 1610 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr~al~~L~~---~~~~~~~~-~~~l~~i~p~L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~- 1610 (2256)
..++.|...+......++--++.+.. .+|..... .-.-..++|.+...++.. ...+-+.+..++.|+...-.+.
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence 24455555554322122211222211 23432211 011135777777777653 3455666777888887631110
Q ss_pred -C-cc-hhhhh-hhhHHHHHhhcC---CCHHHHHHHHHHHHHHHHh---------------hC----------cCc----
Q 000098 1611 -K-DM-IPYIG-LLLPEVKKVLVD---PIPEVRSVAARAIGSLIRG---------------MG----------EEN---- 1654 (2256)
Q Consensus 1611 -~-~l-~~~l~-~Ll~~L~~~L~d---~~~~VR~~a~~aL~~L~~~---------------~g----------~~~---- 1654 (2256)
. .. ...++ .+++ +.+.+.. .++++.+.....-..+-+. .| +.|
T Consensus 265 ~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN 343 (429)
T cd00256 265 VKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWREN 343 (429)
T ss_pred hhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHH
Confidence 0 01 11112 2222 3333332 2334333221111111110 01 011
Q ss_pred ---h----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--cHhHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHh
Q 000098 1655 ---F----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEH--ILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2256)
Q Consensus 1655 ---~----~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~--g~~~l~~--ll~~ll~~l~~~~~~vR~~al~~l~~L 1723 (2256)
| -+++..|.+.|....++....-|+.-+|++++.. |+..+.. .=..+++.++++++.||..|+.++..+
T Consensus 344 ~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 344 ADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1377788888865455555666778899999886 4443322 334578888999999999999988755
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=92.33 E-value=2.2 Score=54.16 Aligned_cols=76 Identities=26% Similarity=0.303 Sum_probs=55.1
Q ss_pred CcchhhhhhhhHHHHHhhc----------CCCHHHHHHHHHHHHHHHHhhCcCchH---HHHHHHHHHhhcC-CCHHHHH
Q 000098 1611 KDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSD-NSNVERS 1676 (2256)
Q Consensus 1611 ~~l~~~l~~Ll~~L~~~L~----------d~~~~VR~~a~~aL~~L~~~~g~~~~~---~lip~Ll~~L~~~-~~~~~R~ 1676 (2256)
-.+.||+..+||.++.++. |.+|.+|.-|++.+..++..++..|.. .+...+.+.+.+. ......-
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 4678999999999998864 678999999999999999998876432 3444444444443 4455566
Q ss_pred HHHHHHHHHH
Q 000098 1677 GAAQGLSEVL 1686 (2256)
Q Consensus 1677 ~aa~~L~~i~ 1686 (2256)
|+..+|.++.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 6666666543
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.3 Score=54.38 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=112.1
Q ss_pred HHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC-CcHHHH
Q 000098 1359 AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD-QVVAVR 1437 (2256)
Q Consensus 1359 a~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D-~~~~VR 1437 (2256)
..+|..++..+....+ .+.++|.+.+.+.+.+- --..+-.+-.|+++.. -..|...++|.+...++- ....++
T Consensus 294 lk~Ls~~ip~fp~rv~-~~kiLP~L~~el~n~~~---vp~~LP~v~~i~~~~s--~~~~~~~~~p~l~pi~~~~~~~~~~ 367 (700)
T KOG2137|consen 294 LKGLSKLIPTFPARVL-FQKILPTLVAELVNTKM---VPIVLPLVLLIAEGLS--QNEFGPKMLPALKPIYSASDPKQAL 367 (700)
T ss_pred HHHHHHhhccCCHHHH-HHhhhhHHHHHhccccc---cccccchhhhhhhccc--hhhhhhhhhHHHHHHhccCCcccch
Confidence 3445444444432222 34566666555533210 0011112223333333 244556667777666552 223344
Q ss_pred HHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHh-hcCCCHHH
Q 000098 1438 EAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-LTDTHPKV 1515 (2256)
Q Consensus 1438 ~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~-L~D~~~~V 1515 (2256)
-.-.+-++.+.++++++.+ .+++|.+...+++.+-+....++..+..+++..+-.... ..|+|.+.++ +..+...|
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~v 445 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYV 445 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHH
Confidence 4445666777888888776 789999999999999999999999999999887654433 3688888776 45678899
Q ss_pred HHHHHHHHHHHHhhcCchhHHhHHHHHHhhhC
Q 000098 1516 QSAGQTALQQVGSVIKNPEIASLVPTLLMGLT 1547 (2256)
Q Consensus 1516 R~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~ 1547 (2256)
+..+.-|++.+.+.+....+-+.+..+++++.
T Consensus 446 kvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~ 477 (700)
T KOG2137|consen 446 KVNVLPCLAGLIQRLDKAAVLDELLPILKCIK 477 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 99999999999977655444333344444443
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.09 E-value=80 Score=45.66 Aligned_cols=93 Identities=20% Similarity=0.127 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhh-CccchhchHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCH
Q 000098 1902 RQVAGRALGELVRKL-GERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2256)
Q Consensus 1902 R~~A~~aL~~lv~~~-~~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~ 1979 (2256)
...+..|.+...... |....++++..+..... +....+|..+..-+...+-...--......+.+-..+...+.|.+-
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence 444444554444333 33456777776664333 3357788887766554442211111233446777788888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000098 1980 EVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1980 ~VR~~A~~al~~l~~ 1994 (2256)
+||+.|+.++..+..
T Consensus 1584 ~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988876
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=92.03 E-value=45 Score=42.60 Aligned_cols=235 Identities=13% Similarity=0.102 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHhc--cCc-hHhHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHHhhhhHhh-----HHhHHHH
Q 000098 1393 AKRREGALLAFECLCEKLG--RLF-EPYVIQMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSAQG-----VKLVLPS 1462 (2256)
Q Consensus 1393 ~~~Re~al~al~~L~~~l~--~~~-~pyv~~llp~ll~~l~D~~--~~VR~aa~~al~~l~~~l~~~~-----v~~ilp~ 1462 (2256)
.+.-..|+.+++.+.-... ..+ ..+...++...+..+.+++ -.+.....+++.. .++++.- +..++.
T Consensus 60 ~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~- 136 (372)
T PF12231_consen 60 SRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA- 136 (372)
T ss_pred hHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH-
Confidence 3444556666665543211 111 1222235556666665543 2343344444332 2233321 222222
Q ss_pred HHHhccC--CChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-hHHhHH
Q 000098 1463 LLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLV 1539 (2256)
Q Consensus 1463 Ll~~L~~--~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i~~lv 1539 (2256)
.+..+.+ +.-.+-...+.++..+....|+.+..+...-+|.++..+-+....+|..|...+..+...++.. .+...+
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 2223332 2333445567778888888899998888888888988888889999999877777766655532 222222
Q ss_pred HHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC-Ccchhhhh
Q 000098 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIG 1618 (2256)
Q Consensus 1540 ~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~-~~l~~~l~ 1618 (2256)
...++....+. .....+.+.+..++.++. .-..+.++.+.+..+++.+ -+--+++.
T Consensus 217 ~~~~~~~~~~~---------------------~~~~~~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~n 273 (372)
T PF12231_consen 217 LEDLQRSLENG---------------------KLIQLYCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHLN 273 (372)
T ss_pred HHHhccccccc---------------------cHHHHHHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhHh
Confidence 22222111111 122334444555554421 1123444555555544443 33456788
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC
Q 000098 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
..+.....+++++++.+|..|..|...++.....+
T Consensus 274 ~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 274 EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 88888899999999999999999999999866543
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=92.01 E-value=14 Score=50.44 Aligned_cols=194 Identities=16% Similarity=0.112 Sum_probs=102.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH----
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---- 1453 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---- 1453 (2256)
.-+.++.+.+..++-. ..+ +..++..+......--..++..+.+.+-.....+.+.+|..|.-+++.+....-.
T Consensus 357 ~a~~~i~~~i~~~~~~-~~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~ 434 (574)
T smart00638 357 PALKFIKQWIKNKKIT-PLE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS 434 (574)
T ss_pred HHHHHHHHHHHcCCCC-HHH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666654321 111 2233333333332212344444444443333335778999999888888763221
Q ss_pred ---hhHHhHHHHHHHhcc----CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc---CCCHHHHHHHHHHH
Q 000098 1454 ---QGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTAL 1523 (2256)
Q Consensus 1454 ---~~v~~ilp~Ll~~L~----~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~---D~~~~VR~aA~~aL 1523 (2256)
..+..+++.+.+.+. +.+-..+...+.+||.+.. +..++.+...+. +..+.+|.+|.+||
T Consensus 435 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 435 CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred CChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 112456666655543 3455567778899987654 344444444443 34578999999999
Q ss_pred HHHHhhcCchhHHhHHHHHHhhhCCCC--hhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000098 1524 QQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2256)
Q Consensus 1524 ~~l~~~i~~~~i~~lv~~Ll~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~ 1594 (2256)
..++...+. .+.+.++....|+. ..+| .|+..+..+ .|+...+-.+....-.+++..|+.
T Consensus 505 r~~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 505 RNLAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhcCcHHHHH
Confidence 988765432 23334444445543 3456 355555431 133333333333333455555543
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.75 E-value=4.8 Score=53.04 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=110.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-
Q 000098 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2256)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~- 1654 (2256)
.++|.+...++-. .-+.....++.++--+... -.-....+.++|.|...++|.+..+++.+...++.+++.+...+
T Consensus 349 ~~~p~l~pi~~~~--~~~~~~l~i~e~mdlL~~K-t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v 425 (700)
T KOG2137|consen 349 KMLPALKPIYSAS--DPKQALLFILENMDLLKEK-TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV 425 (700)
T ss_pred hhhHHHHHHhccC--CcccchhhHHhhHHHHHhh-CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH
Confidence 4556665555431 1122233355555322111 11234567899999999999999999999999999999776332
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHH
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQ 1732 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~ 1732 (2256)
-..++|.+.+.........++..++.+++.+++.+.....-+.+..+.+..+..++.+..+....+..++..... ++
T Consensus 426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev- 504 (700)
T KOG2137|consen 426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV- 504 (700)
T ss_pred HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee-
Confidence 345888887776556677789999999999998887765555555566677777888888877777665543322 22
Q ss_pred HHHHHHHHHHHHhcCC
Q 000098 1733 NYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1733 ~yl~~ilp~Ll~~L~d 1748 (2256)
..+.++|.+......
T Consensus 505 -~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 505 -MAENVLPLLIPLSVA 519 (700)
T ss_pred -ehhhhhhhhhhhhhc
Confidence 334566666655443
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=91.68 E-value=3.1 Score=46.33 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=98.3
Q ss_pred cHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch----hcHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHHHhc--
Q 000098 2071 HLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQ-ASIRRSSAYLIGYFYKNS-- 2143 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~~~~-~~vR~~A~~~l~~l~~~~-- 2143 (2256)
.++.....+.+.+++++..-|..+...+..++...+. .+-...+..++..++..+ +.++..++.++..++...
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566666777788898889999999999999887633 344667778888887655 778999999999998753
Q ss_pred -----hhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCCchhchHHHHHHHHh
Q 000098 2144 -----KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2256)
Q Consensus 2144 -----~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e~l~~lv~~l~~~l~ 2201 (2256)
.....|.++.++..+++.+++ ..+...+..+|..++++.|.- +.++...++..+.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt-~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT-FRPFANKIESALL 161 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc-ccchHHHHHHHHH
Confidence 234678899999999999987 678889999999999887754 5555555554443
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.58 E-value=5.2 Score=57.32 Aligned_cols=259 Identities=18% Similarity=0.193 Sum_probs=141.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccc----hhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH
Q 000098 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2256)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~----l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l 1963 (2256)
..+++.+...++..+..|...|++++.....+. ++.....+.+...|.+..+|...-..+..++..++. .+.||+
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk-~lsp~L 122 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK-KLSPFL 122 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 344455567788999999999999998665443 333334445666788999999988888888877764 478999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhh
Q 000098 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2256)
Q Consensus 1964 ~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~ 2043 (2256)
+.++|.......|.+..|-.+|..+|..... ++ -.|.++..-. ..+++.+-..
T Consensus 123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~e----k~~~v~~~c~--------------------~~i~~~~~~~ 175 (1312)
T KOG0803|consen 123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFA---EE----KDRHVWFKCD--------------------PEIFYLVTEI 175 (1312)
T ss_pred HhhhhhhhheecccchHHHHHHHHHHHhhcC---hh----hhHHHHHHhh--------------------HHHHHHHHHH
Confidence 9999999999999998887766555443221 11 1111111000 0000000000
Q ss_pred hh-cCchhhhHHHHHHHHH-HHhCCCccccHhhHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhh
Q 000098 2044 LV-HLPLSAFNAHALGALA-EVAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2256)
Q Consensus 2044 L~-~~p~~~~~~~aL~~La-~~~g~~l~~~l~~Ilp~Ll~~l~-~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~ 2120 (2256)
+. ..|. ....+.+++ +-+.....+.....+-.+...+. ..+.+.......+...+.. -+.+-..
T Consensus 176 ~~~~~~~---slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s----------~~~fWk~ 242 (1312)
T KOG0803|consen 176 LVKETPD---SLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLS----------SEKFWKL 242 (1312)
T ss_pred HhccCcc---ccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhh----------HHHHHHH
Confidence 00 0000 000000000 00011111112222222222221 1111112211122222222 2345666
Q ss_pred cCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCCC
Q 000098 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2256)
Q Consensus 2121 l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~e 2187 (2256)
+++..+.+|.+..+.+..+++....-+.++-...+.+.....-|+...|.-..|+++.-+...+|.+
T Consensus 243 ~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d~~c~~~we~Vl~~~~~~p~~ 309 (1312)
T KOG0803|consen 243 LKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLDHVCSSMWEKVLLNLSSLPDE 309 (1312)
T ss_pred hcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccccccHHHHHHHHHHhhhhhHH
Confidence 7888999999999999999886554445554455555554444444488889999999776666653
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.43 E-value=6.4 Score=47.94 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---ch-HHHHHHHH
Q 000098 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLL 1663 (2256)
Q Consensus 1588 ~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~-~~lip~Ll 1663 (2256)
.+.+.|..|.+-+..+++.+....++.+ + ..+..+...+++++..+|+.|++.+|+.+..-+.. .+ ...++.|+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~-~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLIS-L-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhh-c-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3456666666666666654433233322 2 23444444899999999999999999999754321 11 13677888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhcHh--HH---HHHHHHHHHhccC--CCHHHHHHHHHHHHHhHhhhChhHHHHHH
Q 000098 1664 DALKSDNSNVERSGAAQGLSEVLAALGTV--YF---EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2256)
Q Consensus 1664 ~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~l---~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~~f~~yl~ 1736 (2256)
..+..+.+..+|..+..+++.+++..... .+ .+ ...+...+++ .+...+.-++..+..+......+-...-.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 88888777778999999999998876433 11 11 2334445555 45666677777787776554322111112
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhh
Q 000098 1737 QVLPAILD-GLADENESVRDAALGAGHVLVEHYA 1769 (2256)
Q Consensus 1737 ~ilp~Ll~-~L~d~~~~VR~~Al~al~~iv~~~~ 1769 (2256)
..++..+. .....+..+++.+..+.-..+..+.
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 22222222 2223345677777777666555444
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=91.40 E-value=52 Score=42.05 Aligned_cols=270 Identities=14% Similarity=0.112 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHHHHHhh------cCchhHHhHHHHHHhhhCCCCh--hH-HHHHHHHHhcccccCCChh-hHhhHHHHH
Q 000098 1512 HPKVQSAGQTALQQVGSV------IKNPEIASLVPTLLMGLTDPND--HT-KYSLDILLQTTFVNTVDAP-SLALLVPIV 1581 (2256)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~~------i~~~~i~~lv~~Ll~~l~d~~~--~v-r~al~~L~~~~~~~~~~~~-~l~~i~p~L 1581 (2256)
+.++-.+|.++++.+... +.+.....++...+..+.+++. .+ +.++..+....|....-.. -...++..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 456666777777766532 2222233466777777777752 22 4566666666665543222 222333333
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHH
Q 000098 1582 HRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2256)
Q Consensus 1582 ~~~L~-d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip 1660 (2256)
...-+ =.+..+-.....++.++.. ..+..+..+.+.-+|.++..+.+....+|..|......+...+|++ ..+..
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~--q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~--~~~s~ 214 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLS--QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN--KELSK 214 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh--HHHHH
Confidence 33222 2344454555566666665 3344455556666777777777888889988777766666666644 12222
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh---HHHHHHH
Q 000098 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ---FQNYLQQ 1737 (2256)
Q Consensus 1661 ~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~---f~~yl~~ 1737 (2256)
.+.+.++...... .+.+.+.+.+...+.+++. -..++..|+.+...+|.. --+|++.
T Consensus 215 ~~~~~~~~~~~~~------------------~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~ 274 (372)
T PF12231_consen 215 SVLEDLQRSLENG------------------KLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNE 274 (372)
T ss_pred HHHHHhccccccc------------------cHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhH
Confidence 2222222211110 1122233333333333110 112334444444444432 2368888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc------hhchHHHHHhhcCC-C----CHHHHHHHHHHHHHHHHh
Q 000098 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPLLLPAVEDGIFN-D----NWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~------~~~llp~L~~~l~d-~----~~~iR~~sv~llg~ll~~ 1805 (2256)
.+...-.++++.++.+|..|..|.+.++....... +..+.-.+...+.. . ...+|...+..++.+++.
T Consensus 275 wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 275 WLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 89999999999999999999999999987544321 12232233322321 1 125566666666666543
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=91.18 E-value=41 Score=41.29 Aligned_cols=216 Identities=20% Similarity=0.190 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hhC-cccch-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-cCc
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFG-ISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLF 1414 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~-~~g-~~~~~-~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~-~~~ 1414 (2256)
+...+..+....+|..-.++..-|...++ ... ...+. +..+-..+.+.+...-...+-.-|+..+..+.+.+| +.+
T Consensus 12 v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L 91 (307)
T PF04118_consen 12 VEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGL 91 (307)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 44444444444566665544444444444 111 11111 224566666666655455667778999999998887 334
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p 1490 (2256)
...+.-..|.++..+......||-.-.+-++...-.+++ .+ +.++..++.+++|+.-..-..+..++..+.....
T Consensus 92 ~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 92 AQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 444555567777777777788888877777776656665 33 4555666677787766666667777887777654
Q ss_pred hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---------------chhHHhHHHHHHhhhCCCChhH-H
Q 000098 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT-K 1554 (2256)
Q Consensus 1491 ~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~---------------~~~i~~lv~~Ll~~l~d~~~~v-r 1554 (2256)
+. .++..+..++- ++|.+|..|..-+.+-..... .++..-++..+..++.|++.-+ |
T Consensus 171 ~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 171 DK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred hh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 43 22333333333 468899888766654333222 1223457778888999987766 5
Q ss_pred HHHHHHHh
Q 000098 1555 YSLDILLQ 1562 (2256)
Q Consensus 1555 ~al~~L~~ 1562 (2256)
..++.|..
T Consensus 244 ~~LDlLl~ 251 (307)
T PF04118_consen 244 GFLDLLLS 251 (307)
T ss_pred HHHHHHHH
Confidence 68888775
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.17 E-value=62 Score=42.57 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=62.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcc---c-hhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhh-HhhHhhHHHH
Q 000098 1895 ASSSSERRQVAGRALGELVRKLGER---V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPT 1969 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~---~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l-~~~l~~li~~ 1969 (2256)
.+++..+...+..++..++-.++.- + -...+..+...+.++++++|+...+.|.+++-.+....- .++-+.-...
T Consensus 429 ~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~ 508 (678)
T KOG1293|consen 429 MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANL 508 (678)
T ss_pred hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHH
Confidence 3444445555555555555444432 1 245567777788888899999999999988766654322 2333334455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1970 IRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1970 l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
+.....|++..|++.+...+-.+.
T Consensus 509 i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 509 ILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhh
Confidence 556678999999998766555443
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=91.16 E-value=23 Score=48.88 Aligned_cols=134 Identities=24% Similarity=0.214 Sum_probs=83.7
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcc--------------CchHhHHHHHHHHHHHcCCCcHHHHHHH
Q 000098 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGR--------------LFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2256)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~~--------------~~~pyv~~llp~ll~~l~D~~~~VR~aa 1440 (2256)
.++..+...+.. .++...+..++.+++.+....-. ..+.|+..+...+-......+...+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 455555555432 23577889999999999875321 1233445555555555566677778888
Q ss_pred HHHHHHHHhhhhHhhHHhHHHHHHHhccCC---ChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC--CCHHH
Q 000098 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDK---AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKV 1515 (2256)
Q Consensus 1441 ~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~---~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D--~~~~V 1515 (2256)
..|++.+. ....++.+...+.+. .-..|..|+.+|..++..+|+... +.+++.+.| .+++|
T Consensus 511 LkaLgN~g-------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~-------~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 511 LKALGNLG-------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR-------EILLPIFMNTTEDPEV 576 (618)
T ss_dssp HHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH-------HHHHHHHH-TTS-HHH
T ss_pred HHHhhccC-------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH-------HHHHHHhcCCCCChhH
Confidence 88887763 345677777777654 678999999999988877766543 334444443 46889
Q ss_pred HHHHHHHHHH
Q 000098 1516 QSAGQTALQQ 1525 (2256)
Q Consensus 1516 R~aA~~aL~~ 1525 (2256)
|-+|...|-.
T Consensus 577 RiaA~~~lm~ 586 (618)
T PF01347_consen 577 RIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998866544
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=90.50 E-value=24 Score=43.23 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1419 IQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1419 ~~llp~ll~~l~D~-~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..+-..+-+|+.=. ...|...|.+....+.+.++.+.+ .-+.|.++..+...+-.+|..-+..+....-..+..+
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L 132 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL 132 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence 34455555565432 457889999999999999988765 4567888888888888899888888887777677788
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhh-CCCChhHH-HHHHHHHh--cccc---
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTK-YSLDILLQ--TTFV--- 1566 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l-~d~~~~vr-~al~~L~~--~~~~--- 1566 (2256)
...++.++..++.++.|+..++...+...+..+...+++.++ ...++.++ ..| ..| .|+.-+.. ..+.
T Consensus 133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F---~~~lwl~ii~sp--~~Rl~al~~l~~~l~~~~~~~ 207 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYF---WQCLWLCIITSP--SRRLGALNYLLRRLPKFQNDE 207 (307)
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHH---HHHHHHHHhcCc--chhHHHHHHHHHhCCcccccc
Confidence 899999999999999999999999999999999988876633 23333333 333 233 23333222 1111
Q ss_pred --------cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1567 --------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1567 --------~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
...-.+....++..+..++.|.+.-|++...+.+-.-..
T Consensus 208 ~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 208 LSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred cccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 001123345677888888889888888886666554433
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=90.42 E-value=5.7 Score=49.81 Aligned_cols=86 Identities=23% Similarity=0.422 Sum_probs=59.5
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhh
Q 000098 1865 LHVWKTIVANTPKTLKEIMPVLMNTLISSL----------ASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRG 1931 (2256)
Q Consensus 1865 ~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L----------~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~ 1931 (2256)
+.+..++..|..-.+.+|+..+++.++.++ .+.++..|..|+..|+.++++++.. ..+.+...+.+.
T Consensus 238 m~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~ 317 (343)
T cd08050 238 MRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKA 317 (343)
T ss_pred HHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 345556666655455556666665555444 2345899999999999999999876 357777777777
Q ss_pred cCCCC--hhhHHhHHHHHHHH
Q 000098 1932 LKDPS--ASRRQGVCIGLSEV 1950 (2256)
Q Consensus 1932 l~d~~--~~vR~~a~~aL~ei 1950 (2256)
+.|+. .....|+..+|..+
T Consensus 318 l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 318 LLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HcCCCCCcchhhHHHHHHHHh
Confidence 77663 34588988887754
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.96 Score=49.65 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=86.1
Q ss_pred cccHhhHHHHHHHhhC------------------CCCHHHHHHHHHHHHHHHhhcch-hcHHHHHHHHHhhcCCCChhhH
Q 000098 2069 NFHLGTILPALLSAMG------------------DDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIR 2129 (2256)
Q Consensus 2069 ~~~l~~Ilp~Ll~~l~------------------~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~~~~~~vR 2129 (2256)
.++++.++|.++.... |+.-++|..|.+|+.+++..+.. -.+..+++.+..+++| +..+|
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk 82 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIK 82 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHH
Confidence 4566777777776542 12358899999999999997633 4478889999999999 99999
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcC----CC--------ChHHHHHHHHHHHHhhccCC
Q 000098 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS----DS--------DSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2130 ~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~----D~--------d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
..+...+..++...+..+...+..++.++-..++ +. ..+..+.+..+...+-..++
T Consensus 83 ~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 83 MLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp HHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999998888888888888888877773 21 23566677777777755554
|
; PDB: 4A0C_A 1U6G_C. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=90.14 E-value=36 Score=46.50 Aligned_cols=134 Identities=20% Similarity=0.140 Sum_probs=81.2
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhc-cC-------chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000098 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLG-RL-------FEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2256)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~-~~-------~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2256)
.++..+.+.+.+ ..++..|..++.+++.+..... .. ...|+..+...+-.+..+.+...+.....+++.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 566667666654 3356788999999999987432 11 122333333333334444555566666777665
Q ss_pred HHhhhhHhhHHhHHHHHHHhcc---CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc--CCCHHHHHHHHH
Q 000098 1447 MMSQLSAQGVKLVLPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQT 1521 (2256)
Q Consensus 1447 l~~~l~~~~v~~ilp~Ll~~L~---~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~--D~~~~VR~aA~~ 1521 (2256)
+.. ...++.+...+. +...+.|..|+.+|..++..+|+..... +++.+. +.+++||.+|+.
T Consensus 473 ~g~-------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~-------l~~i~~n~~e~~EvRiaA~~ 538 (574)
T smart00638 473 AGH-------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV-------LLPIYLNRAEPPEVRMAAVL 538 (574)
T ss_pred cCC-------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-------HHHHHcCCCCChHHHHHHHH
Confidence 532 222333333332 3467899999999999998887765433 333443 467899999987
Q ss_pred HHHH
Q 000098 1522 ALQQ 1525 (2256)
Q Consensus 1522 aL~~ 1525 (2256)
.|-.
T Consensus 539 ~lm~ 542 (574)
T smart00638 539 VLME 542 (574)
T ss_pred HHHh
Confidence 7644
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.08 E-value=5.6 Score=53.83 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHhhC--cC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH----HHHHHHHHHh
Q 000098 1633 PEVRSVAARAIGSLIRGMG--EE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRN 1704 (2256)
Q Consensus 1633 ~~VR~~a~~aL~~L~~~~g--~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~ll~~ll~~ 1704 (2256)
++-|..|+-.|..++..+. .+ .-..++...+..|.++..+-.|.=.+.+||.+.+.+....+ ...-..++..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 5788888888999988653 22 22356677777777755677888899999999988776643 3455677888
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhhChhHHH----------------HHHHHHH----HHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQN----------------YLQQVLP----AILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1705 l~~~~~~vR~~al~~l~~La~~~g~~f~~----------------yl~~ilp----~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
+.|+.++||.+++.++|.+.....+.|.. -.+..++ .++..++|..+-||....-++..+
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 89999999999999999877764222211 1222233 667777888888888777777766
Q ss_pred HHHhh
Q 000098 1765 VEHYA 1769 (2256)
Q Consensus 1765 v~~~~ 1769 (2256)
+-.|.
T Consensus 731 ~~g~~ 735 (1387)
T KOG1517|consen 731 VVGYV 735 (1387)
T ss_pred HHhhH
Confidence 55443
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.1 Score=42.52 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhHhhhCh-hHHHHHHHHHHHHHHh
Q 000098 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDG 1745 (2256)
Q Consensus 1669 ~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~-~f~~yl~~ilp~Ll~~ 1745 (2256)
..+...|..+..+++.+++ .+.+++..+.|.++..++. ..++.|..++.+|..+...+++ ++.|++++++-.+++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4566688888899999998 7777788888888777765 3558999999999988888875 5777877777776665
Q ss_pred c
Q 000098 1746 L 1746 (2256)
Q Consensus 1746 L 1746 (2256)
.
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 4
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=89.78 E-value=2.7 Score=46.28 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=77.1
Q ss_pred chHhHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHHHhhhhHh-hHHhHHHHHHHhccCCChhH
Q 000098 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2256)
Q Consensus 1414 ~~pyv~~llp~ll~~l~------------------D~~~~VR~aa~~al~~l~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2256)
+.|++..++|.++.... |+.-++|++|.+++..+...+... .+..++..+..++.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45777888888886542 345699999999999998765543 357789999999999 9999
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc
Q 000098 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~ 1509 (2256)
|..+...+..++..+|..+...++.+++.+...|+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998888774
|
; PDB: 4A0C_A 1U6G_C. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=89.70 E-value=4.6 Score=44.93 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=95.1
Q ss_pred hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCch----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~----~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
.++.++..+...++++++.-|-.+...++.+++..|.+.+ ...+..++..|++.+....+..+...+..+....+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566788888999999999999999999999988765533 345666677777767777788888888887755432
Q ss_pred h----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1692 V----------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1692 ~----------~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
. .+..+++.+++.+++ ....+.++.++..+-...+..|.||..++-..+...+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 1 334455555555544 5677888888888888888888888888777666554
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=89.42 E-value=3.2 Score=42.46 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.9
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
.++..+.+.+.+ +++...|..++.+++.+.+..++...++..+++..+...+..+ ++|..|.++...+...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 455666666665 6677888899999999999666666666666666666666554 89999999999999999988
Q ss_pred hHHhHHHHHHH
Q 000098 1455 GVKLVLPSLLK 1465 (2256)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2256)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 77776665543
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=89.38 E-value=37 Score=44.03 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCCCcc--ccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch----hcHHHHHHHHHhhcCCC-Chh
Q 000098 2055 HALGALAEVAGPGLN--FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDN-QAS 2127 (2256)
Q Consensus 2055 ~aL~~La~~~g~~l~--~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~~~-~~~ 2127 (2256)
+.|.+..+..+..+. .++..++..+-+.+.++..+ ..+...+..++.+++. +++..++..++..+++. ...
T Consensus 181 rLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 181 RLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred HHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHH
Confidence 344444444444443 57788888887777765422 3477888899988754 57888888888888643 455
Q ss_pred hHHHHHHHHHHHHHhchhh-hhhhH----HHHHHHHH-----HHcCC-CChHHHHHHHHHHHHhhccC
Q 000098 2128 IRRSSAYLIGYFYKNSKLY-LVDEA----PNMISTLI-----VLLSD-SDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2128 vR~~A~~~l~~l~~~~~~~-~~~y~----~~il~~L~-----~~l~D-~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
-+..-+..++.++-..+.+ +...+ +.+...++ ..++. ....=|+.+.-++.+++...
T Consensus 259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 5555555555554433322 11111 11222222 22222 23344777777777776443
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=89.36 E-value=9.2 Score=46.71 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=99.5
Q ss_pred CCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc---------hHHHHHHHHHHhh------c-CCCH
Q 000098 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK------S-DNSN 1672 (2256)
Q Consensus 1609 ~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~---------~~~lip~Ll~~L~------~-~~~~ 1672 (2256)
+...+..+++-++|.++.++.|..+.+|..++.++..+...++... .+-+-+.+...+. . +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 4467788999999999999999999999999999999998765443 2233444444444 1 2233
Q ss_pred HHHHHHHHHHHHHHHHh---cHh----HHHHHH-HHHHHhccCC----CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHH
Q 000098 1673 VERSGAAQGLSEVLAAL---GTV----YFEHIL-PDIIRNCSHQ----RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2256)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~---g~~----~l~~ll-~~ll~~l~~~----~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp 1740 (2256)
..-..+..++-.++... +.. .+..++ ..++..+... .+.++...+..+..+...+|.....|+..++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33344445555555432 111 233333 3366655432 48889999999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 000098 1741 AILDGLADEN 1750 (2256)
Q Consensus 1741 ~Ll~~L~d~~ 1750 (2256)
.+.+.+.++.
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888764
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.53 E-value=88 Score=40.39 Aligned_cols=213 Identities=17% Similarity=0.158 Sum_probs=133.7
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhh-hh--Hh---hHHhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LS--AQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~-l~--~~---~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la 1486 (2256)
.|+..+..++..++.+-+.+...-|- ..-+.++..+ ++ ++ -+..++..++.++++++..+|+-+++.|.-+.
T Consensus 42 ~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 42 EFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred hhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 45666667777777766654433332 2334444442 11 12 24678888899999999999999999999988
Q ss_pred hhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhh-CCCChhHHH-HHHHHHhcc
Q 000098 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTT 1564 (2256)
Q Consensus 1487 ~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l-~d~~~~vr~-al~~L~~~~ 1564 (2256)
.+..+.-...+..++..+.+.+-|..+.||..|..+|..+-+.-.+++- .+...|...+ .||+..+|. ++-.+.. .
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v-d 197 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV-D 197 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee-C
Confidence 8876644445567888888899999999999999999998776555543 2223333333 588888875 4333321 1
Q ss_pred cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH-HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~-~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
. ...|.+....+|.+...|+... .++..+..... .++.++ + -.+...+.|....|+.++..++
T Consensus 198 n----------sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~--lsi~kr---i-~l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 198 N----------STYPCILERARDVSGANRRMVYERCLPRIGDLKS--LSIDKR---I-LLMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred C----------CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh--ccccce---e-hhhhhcchhhhhhHHHHHHHHH
Confidence 1 1236666666676665555432 23333322100 112222 1 2556678888899998888877
Q ss_pred HH
Q 000098 1644 GS 1645 (2256)
Q Consensus 1644 ~~ 1645 (2256)
..
T Consensus 262 a~ 263 (885)
T COG5218 262 AS 263 (885)
T ss_pred HH
Confidence 54
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.47 E-value=7.3 Score=47.49 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH----HhHHHHHHHh
Q 000098 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKG 1466 (2256)
Q Consensus 1391 ~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v----~~ilp~Ll~~ 1466 (2256)
.+...++.++.-+..+++.++..-.=.-...++.++..+++.+..+|..|++.++.++++-+.... ...++.++..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 367889999998888888776311111112344555589999999999999999999998876442 3478888888
Q ss_pred cc-CCChhHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHh
Q 000098 1467 LE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD--THPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1467 L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L--~~Ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~ 1528 (2256)
+. ++.-.+|..|+.+++.+....+.....++ +. ...|..++++ .+...+..+..-+..+..
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 87 45566778899999999987765443332 23 4456777776 445555556655555543
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.3e+02 Score=41.60 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc---c---chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHh
Q 000098 1880 KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE---R---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1880 ~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~---~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2256)
-.++..++...+..+.+.+-.+|..+..+|......+.. . .....+|.+.+.+.+.+|-+.+.++.++..+...
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 345555566666677777778888888877655443321 1 1244566667777788888889999999888887
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCC
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDS 1977 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~ 1977 (2256)
+|.=....++..++|.+...+.|.
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 775444556677888887665543
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.14 E-value=2.7e+02 Score=44.41 Aligned_cols=701 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-----------hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----------QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-----------~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
+++.+..+++..+..++..+..++..+...... .-+..+++.++....+..|..|.+++..|+.+.+..
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Q ss_pred hhh-HhhhhhhHHHHHHHhhcCCCHHHHH----HHHHHHHHHHhhcCc---------hhHHhHHHHHHhhhCCCChhHHH
Q 000098 1490 PQQ-LSQCLPKIVPKLTEVLTDTHPKVQS----AGQTALQQVGSVIKN---------PEIASLVPTLLMGLTDPNDHTKY 1555 (2256)
Q Consensus 1490 p~~-l~~~L~~Ivp~L~~~L~D~~~~VR~----aA~~aL~~l~~~i~~---------~~i~~lv~~Ll~~l~d~~~~vr~ 1555 (2256)
|.. +-...-.++..+...+.|...++-. .+-..+..+...+.+ .....++..+..-+.+|+..+|+
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~ 1144 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVRE 1144 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHH
Q ss_pred HHHHHHh------cccccCCChhhHhhH-HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1556 SLDILLQ------TTFVNTVDAPSLALL-VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1556 al~~L~~------~~~~~~~~~~~l~~i-~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
....+.. ..-+...-.|....+ .|.+..-++...-.......+.+......-.++-++..-+-.+...+..++
T Consensus 1145 ~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La 1224 (3550)
T KOG0889|consen 1145 FSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALA 1224 (3550)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhh
Q ss_pred cCCCHH------------------HHHHHHHHHHHHHHhhCcC------chHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1629 VDPIPE------------------VRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2256)
Q Consensus 1629 ~d~~~~------------------VR~~a~~aL~~L~~~~g~~------~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~ 1684 (2256)
.+..++ .|..+.+.++.......-. +.+.++..++..+.. ...+...++..++..
T Consensus 1225 ~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~-~~~Ei~~~~~~~l~~ 1303 (3550)
T KOG0889|consen 1225 DAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYK-RSSELIEVALEGLRK 1303 (3550)
T ss_pred hhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Q ss_pred HHHH---hcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000098 1685 VLAA---LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ-NYLQQVLPAILDGLADENESVRDAALGA 1760 (2256)
Q Consensus 1685 i~~~---~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~-~yl~~ilp~Ll~~L~d~~~~VR~~Al~a 1760 (2256)
+... ++++.++..+..++.++.|... .-...+..++.+...+..-|. .+-..++..+...+.+..-+.-..+.++
T Consensus 1304 v~~~~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~ 1382 (3550)
T KOG0889|consen 1304 VLAQDVKLPKELLQSHLRPLLMNLSDHNN-LSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKA 1382 (3550)
T ss_pred hhhccccccHHHHHhhHHHHHHhhhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhcc
Q ss_pred HHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcch
Q 000098 1761 GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840 (2256)
Q Consensus 1761 l~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e 1840 (2256)
....-.......+-.++|.. +...+.+++.+ .......+-...+..
T Consensus 1383 ~~~~~i~~~~i~~f~~lp~~--------------~~~~~~~Ll~~--------------------v~~~e~~L~~~~~sp 1428 (3550)
T KOG0889|consen 1383 GPEMKIIVVIINLFHLLPPA--------------ADKFLDELLLC--------------------VVLLEEVLRKEENSP 1428 (3550)
T ss_pred CccchhhhHHHHHHHhccHH--------------HHHHHHHHHHH--------------------HHHHHHHHHHhcCCh
Q ss_pred hhHHHHHHHHHHhcCCcHHHHHH------HHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000098 1841 KRNEVLAALYMVRSDVSLSVRQA------ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS--SSERRQVAGRALGEL 1912 (2256)
Q Consensus 1841 ~~~~vl~~L~~~~~D~~~~Vr~a------A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~--~~~~R~~A~~aL~~l 1912 (2256)
++..+...+-+..+++....-+. +......+-......+++-+..-.......+..+ .+..+..+.......
T Consensus 1429 ~r~pl~kfl~r~~~~tv~~f~~~~~~~~~~~~f~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1508 (3550)
T KOG0889|consen 1429 FREPLLKFLNRFANPTVDYFLAQLDEPDLYRMFVYALRIDDLLPLREVLAKEWLEFYTLLDPEISSYTVPNMASDIQFQM 1508 (3550)
T ss_pred hhhHHHHHHHHccCchHHHHHHHcchHHHHHHHHHHHcccchhHHHHHHhhhHHHHHHhccCccCccccchhhcchhhhh
Q ss_pred HHhhCc---------cchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH-------hhHHHHHHHHhcC
Q 000098 1913 VRKLGE---------RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-------DELIPTIRTALCD 1976 (2256)
Q Consensus 1913 v~~~~~---------~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l-------~~li~~l~~~L~D 1976 (2256)
+..... .-...+++.+...+..+.-..|...+..+..-.. ...+..|. +-+...+.....+
T Consensus 1509 v~~i~~~vk~~~e~~~s~~~iv~~l~~v~~~~~~~~~~~~~~~l~~~~~---~~~lL~~~~~~~~~~~l~~~il~~~~~~ 1585 (3550)
T KOG0889|consen 1509 VPLISTMVKNDDEWLLSSQFIVLALRRIWKLESILERLFLEDRLCLNSI---VKCLLEYLSLNKYDLELLLQILSFFEGN 1585 (3550)
T ss_pred hHHHHHHHhccHHHhhccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccHHHHHHHHHHHhcc
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHH-HHHHHhhhcccchhhhhhhhhcCchhhhHHH
Q 000098 1977 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDG-LKQILSVRTTAVLPHILPKLVHLPLSAFNAH 2055 (2256)
Q Consensus 1977 ~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~-L~~il~~~~~~~lp~li~~L~~~p~~~~~~~ 2055 (2256)
...+.-.---.-...+.+..........+-..++...+...+.....- ++.+ +.|.+...+-+.....
T Consensus 1586 ~~~d~~~l~~~l~~~vi~~~~~~~kr~~f~~~l~~f~~~~~~~~~~~~~l~~l-----------i~p~l~~~~~kge~~~ 1654 (3550)
T KOG0889|consen 1586 DNIDLTFLKEFLEHEVIKSYSYNMKRNLFLVFLNLFGDKDLGADHKAQVLQGL-----------INPCLNYSFEKGETNE 1654 (3550)
T ss_pred CCccHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCcccchhHHHHHHHHh-----------hhHHHhhccccccccc
Q ss_pred HHHHHHHHhCCCccccHhhHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhhcch---hcHHHHHHHHHhhcCCCChhh
Q 000098 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDD----DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASI 2128 (2256)
Q Consensus 2056 aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~----~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~~~~~~v 2128 (2256)
.++ ..-...+.+.+...-.++ ++..|-.+......+++...+ +....+|...-.++..+|+..
T Consensus 1655 i~~----------~d~~~~~~~~~~~~~~~~~~~~dd~~~i~~lqL~t~~ik~ase~i~d~~~~li~f~w~cl~~eD~~~ 1724 (3550)
T KOG0889|consen 1655 ILG----------PDIVKKIDEVFVNKPLDPSYAYDDGLRIELLQLATLLIKYASEHIHDQRKSLIKFAWNCLKSEDPMI 1724 (3550)
T ss_pred ccC----------CccchhhhhhhccCCCchhhhccchHHHHHHHHHHHHHhccHHHHHHhhHHHHHHHHhhhcccchHH
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCC
Q 000098 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2129 R~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
|+.+...+..+.+ .+.....-+......++..-.+++|.-+..+|.-++..++
T Consensus 1725 k~~~~~~i~~fI~----~~~~~~kiV~qvf~~LlkT~~~E~R~~vk~aLdil~p~l~ 1777 (3550)
T KOG0889|consen 1725 KQSAYLVIAHFIE----RFQIPPKIVLQVFVALLKTYQPEARAIVKQALDILTPALP 1777 (3550)
T ss_pred HHHHHHHHHHHHH----HhccChhHhHHHHHHHhhcccHHHHHHHHHHHHHhchhhh
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=86.62 E-value=5.8 Score=40.35 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=63.8
Q ss_pred cHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~---~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
.++..+.+.+.|.+ +...|..++.+++.+.+..|.....+..++...+...+. .++.|..|..+...+...++..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 45555555555543 667788899999999998777677777777777777776 4569999999999999999887
Q ss_pred hHHhHHHHHH
Q 000098 1455 GVKLVLPSLL 1464 (2256)
Q Consensus 1455 ~v~~ilp~Ll 1464 (2256)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7766655544
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=86.31 E-value=7.2 Score=47.62 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=90.7
Q ss_pred cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhh---H------HhHHHHHHHhcc--------CCChhH
Q 000098 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V------KLVLPSLLKGLE--------DKAWRT 1474 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~---v------~~ilp~Ll~~L~--------~~~w~~ 1474 (2256)
..++.+..-++|.++..+.|.++.+|..+..++..+..+.+... + +.+.+.+...+- +++...
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45778888999999999999999999999999999998776554 2 233334444443 344454
Q ss_pred HHHHHHHHHHHHhhC---hhh-HhhhhhhHH-HHHHHhh----cCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHH
Q 000098 1475 KQSSVQLLGAMAYCA---PQQ-LSQCLPKIV-PKLTEVL----TDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTL 1542 (2256)
Q Consensus 1475 R~~a~~~Lg~la~~~---p~~-l~~~L~~Iv-p~L~~~L----~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~L 1542 (2256)
=..+..++-.++... +.. -...+..++ ..++..+ +-++++++...++.+..+.+.++-. +++.+++.+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555554431 111 111222222 2133332 2236888999999998888887643 568888888
Q ss_pred HhhhCCCC
Q 000098 1543 LMGLTDPN 1550 (2256)
Q Consensus 1543 l~~l~d~~ 1550 (2256)
...+.+|.
T Consensus 271 ~~~l~npf 278 (282)
T PF10521_consen 271 SQILENPF 278 (282)
T ss_pred HHHhcCCC
Confidence 88888774
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=86.15 E-value=1.4e+02 Score=40.17 Aligned_cols=230 Identities=18% Similarity=0.164 Sum_probs=121.5
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH---hhhhh----hHHHHHHHhhc---C-CCHHHHHHHHHHHHHHHh
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLP----KIVPKLTEVLT---D-THPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l---~~~L~----~Ivp~L~~~L~---D-~~~~VR~aA~~aL~~l~~ 1528 (2256)
+...+..|...+-..|.+++.++..+....+..- ...+. .++..|+..-. + +....+.-|..-|..|+.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 3444455555555666666666666665433210 01111 22222222211 1 224456677777777775
Q ss_pred h---cCchhHHhHHHHHHhhhCCCCh-h-HHHHHHHHHhcccccCCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1529 V---IKNPEIASLVPTLLMGLTDPND-H-TKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2256)
Q Consensus 1529 ~---i~~~~i~~lv~~Ll~~l~d~~~-~-vr~al~~L~~~~~~~~~~~~~l--~~i~p~L~~~L~d~~~~vR~~a~~~l~ 1601 (2256)
. ...+.+-.-+|.|++.+...+. . +.+|++.|.... .+..+...+ ...+|.+.+.+.+ .+.....+..++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 2 1134566788999999977765 3 346776665522 111111111 1223444444433 3455666777777
Q ss_pred HHhhhcCCCCc---chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC---------cCchHHHHHHHHHHhhcC
Q 000098 1602 NMCSLVTEPKD---MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG---------EENFPDLVSWLLDALKSD 1669 (2256)
Q Consensus 1602 ~L~~~l~~~~~---l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g---------~~~~~~lip~Ll~~L~~~ 1669 (2256)
+++...+ .+. -...+..+++.+...+.......+-..+.-++.+....+ +.....+...+.+.+++.
T Consensus 165 ~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 7766432 111 122333455555555555555555566666666655442 113455667777777776
Q ss_pred CCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1670 NSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
.....|..+....+.++..+|.+
T Consensus 244 ~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred CCHHHHHHHHHHHHHHHHHhChH
Confidence 66667777777677777777665
|
|
| >KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.58 E-value=40 Score=41.40 Aligned_cols=223 Identities=12% Similarity=0.105 Sum_probs=107.1
Q ss_pred ChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCC--
Q 000098 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTD-- 1548 (2256)
Q Consensus 1471 ~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d-- 1548 (2256)
..+.++.|.+.++....+.|..- .+.+..-+.++.|.+..||..|+.-|..||+. ..+..+.+.|.++++.
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la----~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~s 109 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLA----DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKAS 109 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhh----hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHH
Confidence 34556667777877777766532 24455566788899999999999999999875 2233333333333321
Q ss_pred ----------CChhHHH-HHHHHHh--cc-cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1549 ----------PNDHTKY-SLDILLQ--TT-FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1549 ----------~~~~vr~-al~~L~~--~~-~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
.++.+|+ ++.-+.. .+ -......+.-..++..+...|.|-..+.-.....+++++-.. +. +.-.
T Consensus 110 l~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~-~~-k~~~ 187 (460)
T KOG2213|consen 110 LTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSL-QT-KAGE 187 (460)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-cC-CCCH
Confidence 1334443 4433332 01 111122333344555556666665444333444455555432 21 1111
Q ss_pred hhhhhhhHHHHHh-----hcCCCHHHHHHHHHHH----HHHHHhhCcC-chHH----HHHHHHHHhhcCCCHHHHHHHHH
Q 000098 1615 PYIGLLLPEVKKV-----LVDPIPEVRSVAARAI----GSLIRGMGEE-NFPD----LVSWLLDALKSDNSNVERSGAAQ 1680 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~-----L~d~~~~VR~~a~~aL----~~L~~~~g~~-~~~~----lip~Ll~~L~~~~~~~~R~~aa~ 1680 (2256)
.-+..+....-.. ++-.+++.-...+.|+ .-+++..... |+.. ++|.-...+. ...+.....
T Consensus 188 a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~----e~rkL~lLK 263 (460)
T KOG2213|consen 188 ARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLT----EERKLDLLK 263 (460)
T ss_pred HHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccch----HHHHHHHHH
Confidence 1222333222211 1112333333333333 3333333322 2222 3333111111 223445566
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHhcc
Q 000098 1681 GLSEVLAALGTVYFEHILPDIIRNCS 1706 (2256)
Q Consensus 1681 ~L~~i~~~~g~~~l~~ll~~ll~~l~ 1706 (2256)
.++++......+...+.+|.+++.+.
T Consensus 264 ~lAEMss~ttaq~a~q~Lpsi~elLk 289 (460)
T KOG2213|consen 264 ALAEMSSYTTAQAARQMLPSIVELLK 289 (460)
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHH
Confidence 77777766655566777777777654
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=84.79 E-value=6.3 Score=38.96 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=58.2
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000098 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2256)
Q Consensus 1461 p~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 1540 (2256)
...++.+.|+..-+|..++..|..+..... ......+.++..+...++|+++-|=-+|.++|..++...++ .++|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl~ 80 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVLP 80 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHHH
Confidence 344455556666666667777777776544 22234578888899999999999999999999999987654 3455
Q ss_pred HHHhhhCCC
Q 000098 1541 TLLMGLTDP 1549 (2256)
Q Consensus 1541 ~Ll~~l~d~ 1549 (2256)
.|++...|+
T Consensus 81 ~L~~~y~~~ 89 (92)
T PF10363_consen 81 ILLDEYADP 89 (92)
T ss_pred HHHHHHhCc
Confidence 555554443
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.12 E-value=1.6e+02 Score=39.00 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=83.7
Q ss_pred HHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-h--------hHHhHHHHHHhhhCCCCh
Q 000098 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P--------EIASLVPTLLMGLTDPND 1551 (2256)
Q Consensus 1481 ~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~--------~i~~lv~~Ll~~l~d~~~ 1551 (2256)
.+..+.+..|..+-.. ...+.++|..++-..|-+..++++++...+.. + .++.++..+...+.|..+
T Consensus 285 Fl~kls~l~p~i~lrq----~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 285 FLNKLSELSPGIMLRQ----YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHhhcCchHHHHH----HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 3444444444433222 23455678888888999888998888876542 2 346778888889999999
Q ss_pred hHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1552 HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1552 ~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
++| .+++.+...--........-+.+...+.+.+.|++.-||+.|......+..
T Consensus 361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 998 477777652112222233456788889999999999999999988877653
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.38 E-value=1.6e+02 Score=38.48 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcC-
Q 000098 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD- 1669 (2256)
Q Consensus 1591 ~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~- 1669 (2256)
+-|......+..++.++++.+.+. .+...+.. +.+.|+.-+++...+..++..+.++ -++++|.+++.+.+-
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~e~lk----~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-e~~i~pevl~~i~nlp 439 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSDECLK----QMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-ENTIMPEVLKLICNLP 439 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHH----HHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-ccchHHHHHHHHhCCc
Confidence 567777778877777766533322 22222222 5779999999999999999987755 356788888777663
Q ss_pred CCHHHHHHHHHHHHHHHHHhcHh--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHH
Q 000098 1670 NSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2256)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~i 1738 (2256)
.....|..+..-+|++.+-+... .++.++..+...++... ....+..++..++.....+..+.++.+
T Consensus 440 ~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~ 508 (559)
T KOG2081|consen 440 EQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSL 508 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 22336777777778777665433 55666666666666544 444444555555554444433343333
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=83.19 E-value=1.2e+02 Score=41.02 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--H-------HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh
Q 000098 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2256)
Q Consensus 1656 ~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~-------l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~ 1726 (2256)
+.++..-+..|....+.....+++-+|-.+..+.+.. + -+..+|.++..+...+..|...++.++..++..
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 4455554455554344445555555555554433322 1 145678899999999999999999999988764
Q ss_pred hChhHHHHH-HHHHHHHHHhcCCCC------HHHHHHHHHHHHHHH
Q 000098 1727 LGVQFQNYL-QQVLPAILDGLADEN------ESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1727 ~g~~f~~yl-~~ilp~Ll~~L~d~~------~~VR~~Al~al~~iv 1765 (2256)
.-. .+.+ ...+|-++..|-+.. +++-..++.++..|+
T Consensus 597 ~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 597 IRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred chh--hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 432 2232 346778888776553 344455566666665
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=82.66 E-value=95 Score=41.95 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=87.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-
Q 000098 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ-------MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 1456 (2256)
Q Consensus 1385 ~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~-------llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v- 1456 (2256)
..+...++...-|++.-++..++.+.+. +..|+.. .+|.++..+..+++.|-.++..+++.+........+
T Consensus 525 ~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li 603 (717)
T KOG1048|consen 525 LLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI 603 (717)
T ss_pred HHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh
Confidence 3444555777778777777777766543 3444443 468899998888888888888899888766554433
Q ss_pred -HhHHHHHHHhccC------CChhHHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 000098 1457 -KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT-DTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1457 -~~ilp~Ll~~L~~------~~w~~R~~a~~~Lg~la~~~p~~l~~~L~-~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l 1526 (2256)
+..+|.++..|.+ .+|.+-..+|..|..+....+..-...+. .=++.++.... -.++++-++|+.-|..+
T Consensus 604 gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 604 GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 6788999988864 34777777777777777543332222111 22333333332 33456666666655554
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=82.60 E-value=1e+02 Score=36.59 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhc-cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCC
Q 000098 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2256)
Q Consensus 1433 ~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L-~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~ 1511 (2256)
...+.-+...++..++...+. ....+++.+...+ ++.+...+..+++.+..++...--++......+.+.+ =.|.
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l---~~~~ 172 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL---SLDY 172 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc---CCcc
Confidence 444555556778888877776 4456777777778 6777788888899988888543223333333333322 2355
Q ss_pred CHHHHHHHHHHHHHHHhhcCc----hh-HHhHHHHHHhhhCCCC
Q 000098 1512 HPKVQSAGQTALQQVGSVIKN----PE-IASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~~i~~----~~-i~~lv~~Ll~~l~d~~ 1550 (2256)
.|.|-+..+.-+.-+...-.+ +. ...++..+++.....+
T Consensus 173 rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 173 RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 666665544433332221111 11 2566777777666554
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.19 E-value=1.8e+02 Score=38.39 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=79.5
Q ss_pred hhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHH--hhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-HhcH
Q 000098 1616 YIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR--GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA-ALGT 1691 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~--~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~-~~g~ 1691 (2256)
.+..++..+..+.. ..+...-..+...+.++.. .++.+.++.++..|....... .....+-..+..++. ..|.
T Consensus 173 ~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~---~l~~~~w~~m~nL~~S~~g~ 249 (464)
T PF11864_consen 173 EISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV---SLCKPSWRTMRNLLKSHLGH 249 (464)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc---ccchhHHHHHHHHHcCccHH
Confidence 44555665555533 3334444677888888876 334456666776666554332 122223334455543 2233
Q ss_pred hHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhHhhhChhHHHH--HH--HHHHHHHHhcCCCCHHHHHHHHHHH
Q 000098 1692 VYFEHILPDIIRNCS------HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQ--QVLPAILDGLADENESVRDAALGAG 1761 (2256)
Q Consensus 1692 ~~l~~ll~~ll~~l~------~~~~~vR~~al~~l~~La~~~g~~f~~y--l~--~ilp~Ll~~L~d~~~~VR~~Al~al 1761 (2256)
. .+..+...+. ..+..+-.||+..++.+....|++-.|- .. .++|.+...++..++.|--..+..+
T Consensus 250 ~----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i 325 (464)
T PF11864_consen 250 S----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLI 325 (464)
T ss_pred H----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHH
Confidence 3 3333333331 2356666789999988776664421121 12 3788888888866655554555555
Q ss_pred HHHH-HHhh
Q 000098 1762 HVLV-EHYA 1769 (2256)
Q Consensus 1762 ~~iv-~~~~ 1769 (2256)
..++ +.++
T Consensus 326 ~~ll~~~~~ 334 (464)
T PF11864_consen 326 NRLLDGKYG 334 (464)
T ss_pred HHHHhHhhh
Confidence 5555 4443
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=81.34 E-value=2.5 Score=34.74 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
..+|.|+.++.+.+++|+..|+++|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999986
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.25 E-value=17 Score=45.17 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=89.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH
Q 000098 1894 LASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1894 L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l 1970 (2256)
+.+.+..+|+.|...+-++....... .+..+++-+.....|.+..+|......+..++...+++.+.++..-+++.+
T Consensus 67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi 146 (393)
T KOG2149|consen 67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI 146 (393)
T ss_pred hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence 47889999999999999998874433 345566666777788888999998888887777777777888889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhchhhHH
Q 000098 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2256)
Q Consensus 1971 ~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2256)
..++....+++|..+...+..+....++....
T Consensus 147 ~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 147 SSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 99999999999999999999998877664433
|
|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=80.22 E-value=26 Score=37.95 Aligned_cols=125 Identities=17% Similarity=0.100 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC----------------ch
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----------------FE 1415 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~----------------~~ 1415 (2256)
..+|...+.+++.++...-+..+. +.++.+.+.+.. ++...+..+..+..+.+...+. +.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 356778888888888877666554 677888777765 3677778888888888776431 11
Q ss_pred HhHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHHhhhhHhhH--HhHHHHHHHhccCCChhHHHHHHHHH
Q 000098 1416 PYVIQMLPLLLVAFSDQ----VVAVREAAECAARAMMSQLSAQGV--KLVLPSLLKGLEDKAWRTKQSSVQLL 1482 (2256)
Q Consensus 1416 pyv~~llp~ll~~l~D~----~~~VR~aa~~al~~l~~~l~~~~v--~~ilp~Ll~~L~~~~w~~R~~a~~~L 1482 (2256)
.....++..+...+... ...+...+..++...+...+...+ ..+++.+++.+.+++- +..|+++|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 11223344444433322 267788888888888776665554 3578888888865544 66666654
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2256 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-27 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-23 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-23 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 422 bits (1086), Expect = e-126
Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 18/472 (3%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386
S ++ ++ L +L R A +A + G I L +G
Sbjct: 4 HHHSDSQQSIKVLEELFQKL-SVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446
+ D+ +A A+ A L EPY++Q++P + ++ ++ A +
Sbjct: 63 IKDKKTAANAMQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLIS 121
Query: 1447 MMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
+++ ++ +K +LP L + + W+ K + + AM A Q++ +P+++P L+
Sbjct: 122 IVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
E + DT +V++A A+ + + N +I +P+L+ + DP ++ +L TTF
Sbjct: 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTF 240
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
V V +L+++VP++ RGL ER K+K+A I+ NMC LV +P+ + P++G LLP +K
Sbjct: 241 VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300
Query: 1626 KVLVDP-IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684
PE R V RA+ +L R +G D + L A + S Q ++E
Sbjct: 301 SNFATIADPEAREVTLRALKTLRR-VGNVGEDDAIPELSHA-------GDVSTTLQVVNE 352
Query: 1685 VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-----YLPRSLGVQFQNYLQQVL 1739
+L I+ + I R + Y+ L + +
Sbjct: 353 LLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEF 412
Query: 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1791
+ D + ++ +L R
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRY 464
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 6e-27
Identities = 65/404 (16%), Positives = 139/404 (34%), Gaps = 46/404 (11%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR 1709
+ ++ L L ++ R A ++ L + EH ++ + ++
Sbjct: 9 SQQSIKVLEELFQKLSVATAD-NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67
Query: 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769
+ +L + Y+ Q++PAI ++++ ++ A +V
Sbjct: 68 TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127
Query: 1770 TTSLPLLLPAVEDGIFNDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828
++ LLP + + I N W+ + + + ++ + E
Sbjct: 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE------------ 175
Query: 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK---TIVANTPKTLKEIMPV 1885
+I VL +E + D V+ AA V N K+I
Sbjct: 176 ----LIPVL-----SETM-------WDTKKEVKAAATAAMTKATETVDN-----KDIER- 213
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ +LI +A + V V ++ L ++P+LSRGL + ++ +
Sbjct: 214 FIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV 273
Query: 1946 GLSEVMAS--AGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGMQAID 2002
+ + M + F+ +L+P +++ + E RE A TL + G D
Sbjct: 274 -IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR-VGNVGED 331
Query: 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVH 2046
+ +P L HA + T + LK ++ + +
Sbjct: 332 DAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGA 375
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 5e-15
Identities = 37/256 (14%), Positives = 86/256 (33%), Gaps = 40/256 (15%)
Query: 1874 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS--IIPILSRG 1931
+ + + ++ L L+ ++++ R + + L++G
Sbjct: 3 HHHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1932 LKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
+KD +A+ S + ++ +L+P I T + E++ A
Sbjct: 63 IKDKKTAANAMQAV--AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLI 120
Query: 1991 TLFKSAGMQAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
++ + AI ++P L +A+ + Q L
Sbjct: 121 SIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILA------------------------ 156
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
A A+ + A + + ++P L M D +V++ A A T +D
Sbjct: 157 --------AFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208
Query: 2108 EGVESLVSELLKGVGD 2123
+ +E + L++ + D
Sbjct: 209 KDIERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-10
Identities = 53/345 (15%), Positives = 117/345 (33%), Gaps = 21/345 (6%)
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
L+ + ++ + E + VA L +V + + +++P L+ + + + + + +
Sbjct: 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAIL 155
Query: 1946 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005
M A K Q+ M ELIP + + D+ EV+ +A A + ++ + I+ +
Sbjct: 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI 215
Query: 2006 PTLLHALEDDQTSDTALDGLKQILSVR-----TTAVLPHILPKLVHLPLSAF-------- 2052
P+L+ + D + L V T +++ +L + ++ +
Sbjct: 216 PSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII 275
Query: 2053 -NAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGV 2110
N L +V P LG +LP L S D + + + A + TL
Sbjct: 276 DNMCKLVEDPQVIAP----FLGKLLPGLKSNFATIADPEAREVTLRALK--TLRRVGNVG 329
Query: 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170
E L GD +++ + L +V+ + + LI
Sbjct: 330 EDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWF 389
Query: 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
++ + + + ++ G
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE 434
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-07
Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 35/241 (14%)
Query: 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTAL 2022
+++ + L + + R ++ ++ + L ++D +T+ A+
Sbjct: 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAM 73
Query: 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082
+ I + L E ++ ++PA+ +
Sbjct: 74 QAVAHIAN-----------------------QSNLSPSVEP-------YIVQLVPAICTN 103
Query: 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYK 2141
G+ D ++QS+A E ++ ++ +++L+ L + + + +
Sbjct: 104 AGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP-KEVQPSYIKVIRDAI 2200
+K + P +I L + D+ AAA A+++ +V K+++ +I + I
Sbjct: 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCI 222
Query: 2201 S 2201
+
Sbjct: 223 A 223
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 8e-05
Identities = 51/329 (15%), Positives = 118/329 (35%), Gaps = 44/329 (13%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLY--IRDIGLGGDNVDAGWL 1192
LF+ LS + + R A +A+ + G++ ++ G +
Sbjct: 19 LFQKLSVATADNRHEIASEVASF-------LNGNIIEHDVPEHFFGELAKGIKDKKTA-A 70
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
A+A + L P I+ + I + + +++ I I++
Sbjct: 71 NAMQ-AVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA--KHLAKDDPKVHA-----VVD 1303
+ L P N + + +EK LA + A ++
Sbjct: 130 AIKALLPHLTNAIVETNKWQEK-----------IAILAAFSAMVDAAKDQVALRMPELIP 178
Query: 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGL 1362
L + + + V+ A ++ ++ +++ + + L+ + + E L
Sbjct: 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPE---TVHLL 235
Query: 1363 AGV--VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYV 1418
V ++L + L GL +R + +R+ A++ + +C+ + ++ P++
Sbjct: 236 GATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVI-IDNMCKLVEDPQVIAPFL 292
Query: 1419 IQMLPLLLVAFSDQVVAVREAAECAARAM 1447
++LP L F+ +A EA E RA+
Sbjct: 293 GKLLPGLKSNFAT--IADPEAREVTLRAL 319
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 5e-83
Identities = 120/672 (17%), Positives = 228/672 (33%), Gaps = 96/672 (14%)
Query: 1329 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ D++ ++ L+D+L +++ R + L+ + G+ + + L + +
Sbjct: 2 AADGDDSLYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSE-LLPFLTDTIY 59
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448
D + +G YV +LP L + + VR+ A + RA+
Sbjct: 60 DEDEV--LLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAIS 115
Query: 1449 SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508
+ S ++ L+K L W T ++S G + C P+ S ++ +
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA--CGLFSVCYPRVSSAVKAELRQYFRNLC 173
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568
+D P V+ A + L + V++ + S
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKS------------------------------- 202
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628
++P+ + + A + N+ L+ + L++P +++
Sbjct: 203 -------EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA 251
Query: 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688
D VR + A L + +G E + L D R+ A+ + E
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311
Query: 1689 LG-----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743
L V ILP I S V+ ++ L LG N ++ +LP L
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL 369
Query: 1744 DGLADENESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
L DE VR + + E L LLPA+ + + WR+R + +E + L
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVR 1861
LG + +E L +L M D ++R
Sbjct: 430 -------------------------------AGQLGVEFFDEKLNSLCMAWLVDHVYAIR 458
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-ERV 1920
+AA K +V K + ++ +++ + R + L G +
Sbjct: 459 EAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
++P + R DP A+ R V L ++ S L E+ P + D ++
Sbjct: 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKLTQDQDVD 573
Query: 1981 VRESAGLAFSTL 1992
V+ A A + L
Sbjct: 574 VKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 169 bits (428), Expect = 1e-43
Identities = 97/653 (14%), Positives = 208/653 (31%), Gaps = 86/653 (13%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+ L+ L ++ + + +S++ L +A + + +++P LT+ + D + +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDEVLLALA 69
Query: 1520 QTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579
+ V + L+P L T + L+ + A VP
Sbjct: 70 EQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVP 129
Query: 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+V R ++ A + V+ L + + D P VR A
Sbjct: 130 LVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE-----LRQYFRNLCSDDTPMVRRAA 184
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHIL 1698
A +G + + +N + + L SD + R A + + L ++
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 244
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
P + + + VR F L +++G + ++PA + + D VR AA
Sbjct: 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRAAAS 302
Query: 1759 GA-----GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813
++ + + +LP +++ + + N ++ + ++ L
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL----------- 351
Query: 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIV 1872
+LG+D E +L D VR + +
Sbjct: 352 --------------------SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391
Query: 1873 ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS-IIPILSRG 1931
++++ L+ ++ + R + L +LG + +
Sbjct: 392 EV--IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW 449
Query: 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991
L D + R+ L +++ GK +IP + D R + +
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGKEWAH---ATIIPKVLAMSGDPNYLHRMTTLFCINV 506
Query: 1992 LFKSAGMQAI-DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050
L + G ++PT+L D + +VR
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDP------------VANVRFNV--------------- 539
Query: 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTL 2103
A +L + + + + P L D D+DV+ A+EA ++L
Sbjct: 540 ---AKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-38
Identities = 105/610 (17%), Positives = 202/610 (33%), Gaps = 80/610 (13%)
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
L+P + + + E A+ +G +LV P+ Y+ LLP ++ + VR
Sbjct: 50 LLPFLTDTIYDED-EVLLALAEQLGTFTTLVGGPE----YVHCLLPPLESLATVEETVVR 104
Query: 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696
A ++ ++ + L+ L + R+ A S + +
Sbjct: 105 DKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE 164
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
+ CS VR + + L + N +++P + +DE +SVR
Sbjct: 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLL 222
Query: 1757 ALGAGHVLVEHY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
A+ A + + L++P + + +WR+R + +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE-------------- 268
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKTIVAN 1874
+ + +G + L + + D VR AA H K N
Sbjct: 269 -----------------LQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311
Query: 1875 TPKTLKE--IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRG 1931
+E IM ++ + ++ ++ + + L LG + + ++P+
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQ 371
Query: 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991
LKD R + L V G QL L+P I D+ VR +
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQL---SQSLLPAIVELAEDAKWRVRLAIIEYMPL 428
Query: 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 2051
L G++ DE + +L A D ++R A
Sbjct: 429 LAGQLGVEFFDEKLNSLCMAWLVDHVY-----------AIREAA---------------- 461
Query: 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGV- 2110
L L E G + TI+P +L+ GD + + ++ V ++
Sbjct: 462 --TSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170
+ ++ +L+ GD A++R + A + + + L L D D
Sbjct: 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--VKPILEKLTQDQDVDVK 575
Query: 2171 AAAWEALSRV 2180
A EAL+ +
Sbjct: 576 YFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-37
Identities = 94/577 (16%), Positives = 208/577 (36%), Gaps = 33/577 (5%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716
++ L+D L++++ + R + + LS + ALG L + + + V
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776
+G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126
Query: 1777 LPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTSGKALL----EGGSDDEG---ASTEA 1828
+ + +W R S+ L +V+ L SDD + +
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 1829 HGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887
+VL D ++E++ + SD SVR A+ I P+ +++ ++M
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVM 244
Query: 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERVLPS-IIPILSRGLKDPSASRRQGVCIG 1946
TL + S R + EL + +G + + ++P +KD A R
Sbjct: 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 304
Query: 1947 LSEVMASAGKSQLLS-FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEI 2004
+ E + + M +++P I+ + D+ V+ + L G I+ +
Sbjct: 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364
Query: 2005 VPTLLHALEDD--QTSDTALDGLKQILSVR-TTAVLPHILPKLVHLPLSAFN-------A 2054
+P L L+D+ + + L + V + +LP +V L
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL-AEDAKWRVRLAII 423
Query: 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGVESL 2113
+ LA G F + ++ + D ++ A + + E ++
Sbjct: 424 EYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ ++L GD R ++ + I + + + +M+ T++ + D +
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTK--HMLPTVLRMAGDPVANVRFNV 539
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210
++L ++ + S +K I + ++ +D + +
Sbjct: 540 AKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKY 576
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-07
Identities = 78/548 (14%), Positives = 159/548 (29%), Gaps = 67/548 (12%)
Query: 859 VQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSR---- 914
V L+ L + + P + H LP L ++ +V D A E+L +S
Sbjct: 64 VLLALAEQLGTFTTL-VGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP 120
Query: 915 ----------CTAMPLCNWALDIATALRLIVTEEVHVDS----DLIPSVGEAAKNKESLC 960
+ +W +A L V S +L + +
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDPLL 1018
+ V S + P+ + + + L + + + +
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 1019 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTK-----DVHV 1073
+ M ++ + + EL + P + L + + V
Sbjct: 239 LEALV-MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1074 RMACLNAVKCIPAVSTRSLPENI---EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
R A + VK + EN+ ++ + V D + V A + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1131 DYS------GLFKALSHSNYNVRLAAAEALAT-----ALDEYPDSIQGSLSTLFSLYIRD 1179
D + L VRL L + + S+ ++ L
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE----- 412
Query: 1180 IGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA 1239
DA W R I + A L + + L L D +R +
Sbjct: 413 --------DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464
Query: 1240 GIMIIDKHGRDNV-SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 1298
+++K G++ + + P + L R + L++ +D
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSG------DPNYLHRMTTLFCINVLSEVCGQDITTK 518
Query: 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRG 1357
H ++ +L + P V+ V+ L + + + + V +L++L + +
Sbjct: 519 H-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577
Query: 1358 AAFGLAGV 1365
A L +
Sbjct: 578 AQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 7e-06
Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 11/189 (5%)
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
L +A G +LP L + D+D + +LA++ TLV E V L
Sbjct: 31 IKKLSTIALALGV--ERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L + +R + + ++ + + L T+ +A
Sbjct: 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSA 146
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC----LPKALQP 2229
S V V+ + R+ S D ++ + F L
Sbjct: 147 CGLFSVCYPRVSSAVKAELRQYFRNLCS---DDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 2230 LLPIFLQVF 2238
++P+F +
Sbjct: 204 IIPMFSNLA 212
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 297 bits (761), Expect = 2e-82
Identities = 147/986 (14%), Positives = 329/986 (33%), Gaps = 112/986 (11%)
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS 1349
+ DD VV +L +L + VQ CL PL+ +++ + L M S
Sbjct: 38 SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97
Query: 1350 DKYGERRGAAFGLAGVVK-------GFGISSLKKYGIAATLREGLADRNSAKRREGALLA 1402
DK R ++ GL V+ G +++ I L +A + + AL
Sbjct: 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157
Query: 1403 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462
+ + G L + +L LL + +AVR+ A ++ ++
Sbjct: 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 217
Query: 1463 LLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
LL L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++
Sbjct: 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277
Query: 1522 ALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
A + P +++++ L LT DPN + + D +
Sbjct: 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
+ S + ++ AA+ + + S T + + + + P + + V++
Sbjct: 338 EYSDD---DDMSWKVRRAAAKCLDAVVS--TRHEMLPEFYKTVSPALISRFKEREENVKA 392
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
A SL++ ++ ++ + ++ +I
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-----------------QVPNI 435
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES--VRD 1755
+ + + + R + L L ++ ++P I+ L D++ S ++
Sbjct: 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 495
Query: 1756 AALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
AL +V++ +++ L+P V + + ++I ++ + L+ +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI----- 550
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+ L + S D + I+ L D+ V++ A+ I
Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAA--------------DIDQEVKERAISCMGQI 596
Query: 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVA--GRALGELVRKLGERVLPSIIPILS 1929
+ N L +P + + L + + V G ++ VL +PIL+
Sbjct: 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 656
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
L+ + + G L ++ + S + +D ++ + + +S + V + A
Sbjct: 657 SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 716
Query: 1990 STLFK---SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL-----SVRTTAVLPHIL 2041
+TL K S+ + I+ L+ + AL + + +L
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 2042 PKLVHLPLSAFNA----HALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQS 2092
L S A + ++A+ + + D ++
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRL 836
Query: 2093 LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN---------- 2142
LA + V ID G L S +L+ ++ +++Y +G
Sbjct: 837 LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVL 896
Query: 2143 ------------------------SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
S + L N+ + L+ ++ T E L
Sbjct: 897 QEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG 956
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSR 2204
++ P+ + P + S +R
Sbjct: 957 KLTLIDPETLLPRLKGYLISGSSYAR 982
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 7e-57
Identities = 167/1201 (13%), Positives = 356/1201 (29%), Gaps = 136/1201 (11%)
Query: 1097 EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSG-----LFKALSHSNYNVRLAAA 1151
+V + + D V A L + +R ++
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISS 107
Query: 1152 EALATALDEYPDSIQGSLSTLFSLYIRDI------GLGGDNVDAGWLGRQGIALALHSAA 1205
L T + E P + GS L + + I + + L I + S
Sbjct: 108 IGLKTVIGELPPASSGS--ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165
Query: 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK 1265
L P I+T L+ L VR R + A ++ G L + L+K
Sbjct: 166 GGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 1266 KASDEEKYDLVREGVVIFTGALAKHL-AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL 1324
S + A+++ + + ++ ++ N + ++
Sbjct: 225 NDSMS-----TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279
Query: 1325 SPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384
++ E VS +++ +K Y + +
Sbjct: 280 ESFVRRCPKEVYPHVSTIINICLKYLTY-DPNYNYDDEDEDENAMDADGGDDDDQGSDDE 338
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444
D S K R A + + + + + P L+ F ++ V+ A
Sbjct: 339 YSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAY 398
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504
+++ Q L P ++ E L +P IV L
Sbjct: 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTM-------------------LQSQVPNIVKAL 439
Query: 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTK-----YS 1556
+ + + K + L ++ +V+ I LVP ++ L D + + S
Sbjct: 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALS 499
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-----K 1611
++ V P + LVP V + + + +A + + ++
Sbjct: 500 CLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSF 559
Query: 1612 DMIPYIGLLLPEVKKVL--VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669
D PYI L K L D EV+ A +G +I +G+ DL + L L+
Sbjct: 560 DATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERL 619
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS----VRDGYLTLFKYLPR 1725
+ + R + L+ + + + +L + + + ++ G L+ L +
Sbjct: 620 KNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIK 679
Query: 1726 SLGVQF-QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI 1784
+ + VL + +++ + V A+ L + Y P L + I
Sbjct: 680 NYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY-----PSSLSKISGSI 734
Query: 1785 FNDNWRIRQSSVELLGDL--LFKVAGTSGKALLEGGSDDE-----GASTEAHGRAIIEVL 1837
N+ + +S + G L + + + A+
Sbjct: 735 LNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQ 794
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK------TLKEI--------M 1883
+ +AAL +V + K + +L E+
Sbjct: 795 SYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ 854
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGV 1943
L + ++ + +S S E + A ALG + LP ++ ++ R+ +
Sbjct: 855 LELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITS-----QPKRQYLL 909
Query: 1944 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003
L E+++SA L +++ + + + R L +
Sbjct: 910 LHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR 969
Query: 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN---------- 2053
+ L+ + + +K +S + P + + L
Sbjct: 970 LKGYLIS--GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF-LKTLEDPDLNVRRVA 1026
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLS------------AMG------DDDMDVQSLAK 2095
+ A + L T+LP L + MG DD +D++ A
Sbjct: 1027 LVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAF 1086
Query: 2096 EAAET-VTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154
E T + +D + ++ + G+ D I+ + ++ ++ +
Sbjct: 1087 ECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRL 1145
Query: 2155 ISTLIVLLS------------DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202
+ L + + +A A++ ++ E P + S
Sbjct: 1146 VEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSN 1205
Query: 2203 S 2203
Sbjct: 1206 P 1206
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 194 bits (492), Expect = 1e-49
Identities = 119/744 (15%), Positives = 248/744 (33%), Gaps = 48/744 (6%)
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
L+ + + + K+V + ++L D + +VQ+ L + S +K ++ ++V
Sbjct: 30 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQ 1598
TL + + + I L+T A S + L V + + R SA K++
Sbjct: 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 1599 IVGNMCSLVTE-----PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
+ ++ + ++ + +L + L P VR A+G L+ G
Sbjct: 150 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRA 1710
F DL+ LL L ++S Q ++ + G Y E I+P +++ C+
Sbjct: 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 269
Query: 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYA 1769
+R+ + F+ R + ++ ++ L L D N + D + +
Sbjct: 270 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329
Query: 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829
+ +W++R+++ + L + T + L E A
Sbjct: 330 --DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV----VSTRHEMLPEFYKTVSPALISRF 383
Query: 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889
V + +V A + L+ +P ++
Sbjct: 384 KEREENV-----KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKDPSASR--RQGVC 1944
L + S + RQ L ELV L + +P ++P + L D S+S +
Sbjct: 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
L ++ + + L+P + + D ++ A L L K
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP------ 552
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
D +S A +K + T + + + + +G +
Sbjct: 553 --------LDQPSSFDATPYIKDLF----TCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 2065 GPGLNFHLGTILPALLSAMGDDDMDVQSLA--KEAAETVTLVIDEEGVESLVSELLKGVG 2122
G L L L L + ++ + ++ A + + + V L +
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEA-PNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
NQ +++ + + KN L ++ L L+S+SD A L+ +
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 2182 ASVPKEVQPSYIKVIRDAISTSRD 2205
P + ++ + I R
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRS 744
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 144 bits (362), Expect = 2e-34
Identities = 150/1006 (14%), Positives = 308/1006 (30%), Gaps = 141/1006 (14%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA--VHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ + +DP + + ED
Sbjct: 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380
Query: 1178 RDIGLGGDNV----------------DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLI 1221
+NV A+ + +P I+ L
Sbjct: 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440
Query: 1222 SRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
+ + + + R N +++ ++ +L P LN K+S ++
Sbjct: 441 -KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN----LKI 495
Query: 1279 GVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ-----------RAVSSCLS 1325
+ + + + P V A+V ++ + P + + +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
P L + + +L +D E + A G + +L
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
+N R L P + + +P+L A++ A
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 1446 AMM----SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
++ L+A + VL L + + Q ++ L +A P LS+ I+
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
+L L + A L +++ LL LT P
Sbjct: 736 NELIG-LVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP------------ 782
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
V + S AL ++S + K + C PK+ +G +
Sbjct: 783 -------VYSQSTALT--------HKQSYYSIAKCVAALTRAC-----PKEGPAVVGQFI 822
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
+VK +R +A ++G + + +L S +L+A S + V +S A+
Sbjct: 823 QDVKNS--RSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYA 879
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
L + Y +L +I Q + +L + + + V + Y++ +
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLH----SLKEIISSASVVGLKPYVENIWAL 935
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
+L E R+ L T LP L + + R S V +
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS----GSSYARSSVVTAVKF 991
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
+ H + I +L + D L+VR
Sbjct: 992 TISD-----------------------HPQPIDPLL-----KNCIGDFLKTLEDPDLNVR 1023
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS------------------ERRQ 1903
+ AL + + N P +++++ ++ L + + R+
Sbjct: 1024 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRK 1083
Query: 1904 VAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQG--VCIGLSEVMASAGKSQLL 1960
A + L+ +R+ + + + GLKD + + + LS + SA +L
Sbjct: 1084 AAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143
Query: 1961 SFMDELIPTIRTALCDSIL--EVRESAGLAFSTLFKSAGMQAIDEI 2004
++ L T T + + + E + L S + A + I E
Sbjct: 1144 RLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 104 bits (258), Expect = 3e-22
Identities = 79/501 (15%), Positives = 165/501 (32%), Gaps = 52/501 (10%)
Query: 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777
L L + + ++V+ IL L D+N V++ A+ LV + ++
Sbjct: 29 DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88
Query: 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837
+ + +D ++R S L ++ ++ S + L + I L
Sbjct: 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL----------AANVCKKITGRL 138
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897
+ +SV+ AL + +++ L P ++ L+ L S
Sbjct: 139 -----------TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGK 1956
R+ ALG LV G V +I L L K+ S S + ++ + AG
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALE 2013
++ +++++IP + E+RE AF + + + + I+ L L
Sbjct: 248 -RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
Query: 2014 DD--QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN-----AHALGALAEVAGP 2066
D D + + + + ++ A L A+
Sbjct: 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
L T+ PAL+S + + +V++ A ++ + ++
Sbjct: 367 MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186
L + PN++ L + + T + L+ +V +P
Sbjct: 427 -------------------MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467
Query: 2187 EVQPSYIKVIRDAISTSRDKE 2207
+ ++ I + DK
Sbjct: 468 ALTQHIPVLVPGIIFSLNDKS 488
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 54.0 bits (128), Expect = 7e-07
Identities = 125/1048 (11%), Positives = 301/1048 (28%), Gaps = 86/1048 (8%)
Query: 267 ILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALE 326
++ +G L+ V + + L + ++ R ++ + + E
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSA 125
Query: 327 AMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATE--GKYLNSLSLTICKFLLSCYK 384
K + G +A + AL +++ G L + +I LL
Sbjct: 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 185
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE--ALRRGHLRCLRVICTN 442
V+ + A+ +I+ DL+ S L + + + R +++C+ I
Sbjct: 186 SP-RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR- 243
Query: 443 TDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSL 502
Q +G ++ + K D + + ++ ++++
Sbjct: 244 -----QAGHRIGEYLEKIIPLVVKFCNVDDDE-----LREYCIQAFESFVRRCPKEVYPH 293
Query: 503 VSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP 562
VS + + L+ D + +
Sbjct: 294 VST-----IINICLKYLTYDPNYNYDDEDEDENAMDA---DGGDDDDQGSDDEYSDDDDM 345
Query: 563 SWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFL 622
SW +R+ A ++++ + F V +I ++
Sbjct: 346 SWKVRRAAAKCLDAVVSTRHEM-------LPEFYKTVSPALISRFKEREENVKADVFHAY 398
Query: 623 PSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKR---DAVWQRLHKCLRAV 679
S+ Q + + A + + S P+IV + + + C +
Sbjct: 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML 458
Query: 680 GFNVIEI---VSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEK 736
V + ++ + L ++ SL S++ + A++ L ++ + +
Sbjct: 459 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ 518
Query: 737 HLKDLPDCYVHDSLSENDIQVFYTPEGML----------SSEQGVYIAEIVAAKNTKQSK 786
L V D + + + ++ S + YI ++ +
Sbjct: 519 ALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
++ + +G ++ ++ + + + + + T K
Sbjct: 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGS 638
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
+ +R + L+ L S L L+K L + ++ V
Sbjct: 639 PLKIDLRPVLGEGVPILASFLRKNQRALKLG---TLSALDILIKNYSDSLTAAMIDAVLD 695
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVH-VDSDLIPSVGEAAKNKESLCLFERI 965
E L L + M + A+ T L + + + ++ + ++
Sbjct: 696 E-LPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
+ + + + ++ + S H + K + L
Sbjct: 755 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 814
Query: 1026 ISVLYHVLGVVPSYQA----------AIGSALNELCLGLQPNEVASALHGVYTKDVHVRM 1075
+V+ + V + ++ ++G + + L Q + L + V+
Sbjct: 815 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKS 874
Query: 1076 ACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS-- 1133
A A + ++S +LPE + + + + + ++I Y
Sbjct: 875 A---ASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 931
Query: 1134 ---GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
L K + R AE L P+++ L L + A
Sbjct: 932 IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY---------LISGSSYAR 982
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+ + + I FL + L D + +VR L
Sbjct: 983 SSVVTAVKFTISDHPQPIDPLLKNCIGDFL--KTLEDPDLNVRRVALVTFNSAAHNKPSL 1040
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LL + + N+ +E L+RE
Sbjct: 1041 IRDLLDTVLPHLYNETKVRKE---LIRE 1065
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 1e-05
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 16/186 (8%)
Query: 2075 ILPALLSAMGDDDMDVQSLA----KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR 2130
+ LL M D D + +A + ++ +D++ +V +LK + D ++
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP----- 2185
+ +G K + ++ TL + + L V+ +P
Sbjct: 67 LAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 2186 ----KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFVLY 2241
V + AI+ D + + + L P L +
Sbjct: 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183
Query: 2242 TFSPSS 2247
SP
Sbjct: 184 LTSPRL 189
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-40
Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 2/214 (0%)
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPK 1514
+ + LE+K W ++ S+++L + P+ + +V L +V+T D++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574
+ + L + + ++ + L + K ++ L+ + SL
Sbjct: 73 LVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
+ L ++ K + A + + + LL + K L +P P
Sbjct: 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPT 191
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
VR +A A+G+LI+ MG++ L++ + +
Sbjct: 192 VRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 35/215 (16%), Positives = 83/215 (38%), Gaps = 9/215 (4%)
Query: 1334 EAPTLVSRL---LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG-IAATLREGLAD 1389
+ ++S++ ++ K+ R+ + L ++ +YG + + L++ +
Sbjct: 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
++ A L + L + F Y +P LL F ++ V A A A+ +
Sbjct: 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLS-QCLPKIVPKLTEV 1507
S + S+++ L +K K + + P L+ + L + L +
Sbjct: 128 STSLE---AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542
L + P V+ + AL + ++ + + L+ +
Sbjct: 185 LNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---LGTVYFEHILPDIIRNCSH- 1707
+ + D L+ R + + L ++L L + ++ + + +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWT-LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767
+ L + L +F NY +P++L+ ++ +V A A +
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREA---IDAI 125
Query: 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807
YA+TSL ++ + + N N ++ + + L +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 39/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPI 1632
L+ + + L E+ +K++ +++ + + PK G L+ +KKV+ D
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSN 70
Query: 1633 PEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
+ ++A + + L +G+ + V LL+ K NV L E + A+
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNV-----VTALREAIDAI 125
Query: 1690 -GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ--FQNYLQQVLPAILDGL 1746
+ E I+ + S++ SV+ + L+ + +++ L
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ + +VRD++ A L++ ++ LL V+
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 28/213 (13%), Positives = 79/213 (37%), Gaps = 17/213 (7%)
Query: 2001 IDEIVPTLLHALEDDQTSD--TALDGLKQILSV---RTTAVLPHILPKLV-------HLP 2048
+ ++ LE+ + + +L+ L+++L+ ++ L ++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 2108
L A L LA+ + + +P+LL + +V + +EA + +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--- 129
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN--SKLYLVDEAPNMISTLIVLLSDSD 2166
+E+ +++ + + S++ +A I + ++L+ L++ D
Sbjct: 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189
Query: 2167 STTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199
T ++ EAL ++ + + + +
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPL 222
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 29/240 (12%), Positives = 81/240 (33%), Gaps = 34/240 (14%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVR---KLGERVLPSIIPILSRGLKDPSA 1937
+I+ + L R+ + L +L+ KL +++ L + + S
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ ++A + ++ +P++ + V + A ++ S
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
++ +++ +L + SV++ + L+ AL
Sbjct: 131 ---LEAQQESIVESLSNKNP------------SVKSETA------LFIARALTRTQPTAL 169
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
L + +L+ + + D V+ + EA T+ ++ ++ V L++++
Sbjct: 170 NK----------KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 5e-08
Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 13/207 (6%)
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFND-NWR 1790
L ++ D L ++ ++R +L L+ L+ A++ I D N
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1791 IRQSSVELLGDL-------LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + L L A +LLE + + A AI +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--LKEIMPVLMNTLISSLASSSSER 1901
++ S+ + SV+ + T T K+++ +L +L+ +L
Sbjct: 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPIL 1928
R + ALG L++ +G++ + ++ +
Sbjct: 193 RDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 40/206 (19%)
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSER 1901
+++ Y + ++R+ +L V + ++ + PK L++ L + S+
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 1902 RQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+AG+ L L + L +R + +P L K+ + + + + AS
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 1959 LL------------------------------------SFMDELIPTIRTALCDSILEVR 1982
+ L ++ L + VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTL 2008
+S+ A TL K G +A+ ++ +
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-33
Identities = 117/803 (14%), Positives = 258/803 (32%), Gaps = 112/803 (13%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 65
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
++L K + + + D I
Sbjct: 66 SLSGLIL--------------------------------KNN--VKAHFQNFPNGVTDFI 91
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE 1674
E + D P +R+ I ++ +N+PDL+ L L S++ N
Sbjct: 92 ------KSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNT- 144
Query: 1675 RSGAAQGLSEVLAALGTVYFEH--------ILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726
GA L ++ + ++P ++ H +R + S
Sbjct: 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204
Query: 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---DG 1783
++ + + DE VR A +L+E LP + VE
Sbjct: 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264
Query: 1784 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + + E L A + + +G ++ +
Sbjct: 265 TQDQDENVALEACEFWLTL----AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903
+V + ++R+ + + E++P ++ L L ++
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKE 377
Query: 1904 VAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
LG + + + LP +IP L + L D A R C LS
Sbjct: 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHALE--DD 2015
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A
Sbjct: 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 497
Query: 2016 QTSDTALDGLKQIL-SVRTTAVLPHILPKLVHLPLSAFNA------------HALGALAE 2062
+ D + + SV P + L+ + +N L ++A
Sbjct: 498 KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557
Query: 2063 VAGPGLNFHLGTILPALLSAMG-----------------DDDMDVQSLAKEAAETVTLVI 2105
G + + ++ + D D +A + + +
Sbjct: 558 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGL 617
Query: 2106 DEE-----GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV 2160
++++ + + + D +R+SS L+G K ++ + + L
Sbjct: 618 GGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGT 677
Query: 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI----STSRDKERRKKKGGPI 2216
L+ + A A+ + + E+QP V+ + + K + I
Sbjct: 678 NLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 737
Query: 2217 LIPGFCLPKALQPLLPIFLQVFV 2239
G+ P+ + P+L F++ +
Sbjct: 738 GRLGYVCPQEVAPMLQQFIRPWC 760
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 4e-25
Identities = 102/687 (14%), Positives = 218/687 (31%), Gaps = 66/687 (9%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
L L +YN A AL ++ + + + + L + R
Sbjct: 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK-HSSPKIR 191
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRDNV 1252
++ + I +F+ + D +VR + A +M+++ +
Sbjct: 192 SHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251
Query: 1253 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312
+ I E L + +E V F LA+ P V+ + L L
Sbjct: 252 PHMHNIVEYMLQRTQDQDEN---VALEACEFWLTLAEQ-----PICKDVLVRHLPKL--- 300
Query: 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 1370
+ ++ + S D + R+ +A L + +
Sbjct: 301 -------IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
L I L+E L +E +L + E + PY+ +++P L+ S
Sbjct: 354 DELLPH--ILPLLKELLFHHEW-VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410
Query: 1431 DQVVAVREAAECA----ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486
D+ VR A ++SQ +K ++ LLK + D R ++++ +
Sbjct: 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470
Query: 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-----IASLVPT 1541
A +L L I+ L + K A+ + + + I L+P
Sbjct: 471 EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPP 530
Query: 1542 LLMGLTDPNDHTKYSLDIL---------LQTTFVNTVDAPSLALLVPIVHRGLRERSAET 1592
L+ D K +L LQ+ F+ + P V +V + L +
Sbjct: 531 LIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE-PVYQRCVNLVQKTLAQAMLNN 589
Query: 1593 KKK-------------AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+ A ++ + + + + +L + + + D +PEVR +
Sbjct: 590 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV--ERSGAAQGLSEVLAALGTV---YF 1694
+G L + + P + ++ + N + A + E+ +G Y
Sbjct: 650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI 709
Query: 1695 EHILPDIIRNCSHQRA--SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENE 1751
+L ++ + ++ + L + LQQ + L + +
Sbjct: 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDN 769
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLP 1778
+D+A ++ + + +
Sbjct: 770 EEKDSAFRGICTMISVNPSGVIQDFIF 796
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 2e-22
Identities = 108/749 (14%), Positives = 233/749 (31%), Gaps = 76/749 (10%)
Query: 1105 AVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP 1162
P+ ++ + ++ DF + L + R + L + +
Sbjct: 21 ESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80
Query: 1163 DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 1222
+ ++ +I+ L D+ L R + + + + A ++ P ++ L S
Sbjct: 81 QNFPNGVTD----FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCS 135
Query: 1223 RALADTNADVRGRMLNAGIMIID---KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ G + D D + I + +R
Sbjct: 136 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK--IRSH 193
Query: 1280 VVIFTGALAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
V + + + ++ L + V++ V L L++ D
Sbjct: 194 AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ +++ +++ + + A +L + I + + G
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEF------WLTLAEQPICKDVLVRHLPKLIPVLVNG 307
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
+ + G + + +R+ + A + + + +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDD--------TISDWNLRKCSAAALDVLANVYRDELLPH 359
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 1519 GQTALQQ----VGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVD 1570
L + V S + + L+ LL + D N + + L + T
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE--ACTEL 477
Query: 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630
P LA ++ + + + +G + V + YI +L+P + +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 1631 ---------PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE------- 1674
P+ E S A A+ S E + V+ + L N
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597
Query: 1675 ------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
SG A+GL + L V +IL + + + VR L
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-------YATTSLPL 1775
L ++ + + +P + L E SV + A A + Y L
Sbjct: 656 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 715
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804
L+ + + +++ +G L +
Sbjct: 716 LVEIINRPNTPKT--LLENTAITIGRLGY 742
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 9e-22
Identities = 84/623 (13%), Positives = 184/623 (29%), Gaps = 106/623 (17%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS- 1683
LV P + + AA+ I ++ + +P+L+ ++D ++ + + L
Sbjct: 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161
Query: 1684 --EVLAALGTVYFEH---ILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQF--QNY 1734
E IL I++ + +VR L + +
Sbjct: 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE 221
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE----DGIFNDNWR 1790
++ + + E+ V+ AA G ++ Y T P + A+ + + N +
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
+ +VE ST I L +
Sbjct: 282 VASMTVEFW-------------------------STICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE---RRQVAGR 1907
S +K+++P L+N L + AG
Sbjct: 317 FALSS-----------------------IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967
L + G +L ++ + + + + R+ + +M K Q ++ + +
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413
Query: 1968 PTIRTALCDSILEVRESAGLAFSTLFKS-----AGMQAIDEIVPTLLHALEDDQ------ 2016
P+I + D L+V+E+ + S Q + +V L L+D
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473
Query: 2017 --TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH--------ALGALAEVAGP 2066
T ++ L + P ++ L+ N AL + E A
Sbjct: 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533
Query: 2067 GLNFHLGTILPALLSAMG------------DDDMDVQSLAKEAAETVTLVIDEEG----- 2109
+ +I ++ +G +D +Q L + VI +
Sbjct: 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593
Query: 2110 -VESLVSELLKGVGDNQASIRRSSAY-LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS 2167
+ L+ + + ++ + I + L+ L+ DS
Sbjct: 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDS 653
Query: 2168 TTVAAAWEALSRVVASVPKEVQP 2190
A ++ + S+ ++ +
Sbjct: 654 PVSITAVGFIADISNSLEEDFRR 676
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 2e-21
Identities = 110/710 (15%), Positives = 234/710 (32%), Gaps = 92/710 (12%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+ NV+ A+ AL + Q +S+ ++ I + + + R
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAV-RLAALN 203
Query: 1200 ALHSAADVLRTKD-----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
AL + ++ +M + A + +V+ I+ K+ +
Sbjct: 204 ALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKIMSKY----YTF 258
Query: 1255 LFPIFENYLN--KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312
+ P E L A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF- 317
Query: 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 1370
+ S++D P L++ L Q + + A L + G
Sbjct: 318 --------------ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAF 1429
L+ + + + + N + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEP--VLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSS----VQ 1480
+DQ + V+E + ++ Q + V+ + L GL+D + + +
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIIN 479
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PE 1534
L+ +A P + P +V L + + A + ++++
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS-AFSALTTMVEYATDTVAET 538
Query: 1535 IASLVPTLLMGLTDPNDHTKYSLDIL-------LQTTFVNTVDA----------PSLALL 1577
AS+ ++ L + L + LQ+ + + A P +L
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 1578 VPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
+ + R L ++ SA + + + + + + Y+ P + K L V
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1637 SVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTV 1692
A I + + E+ +++ L + + N+ + ++ + +G
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA- 715
Query: 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES 1752
F L DI+ C + P + ++ +Y +VL A+LD
Sbjct: 716 DFIPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYV----G 760
Query: 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
+ L Y T + ED +++V L+GD+
Sbjct: 761 IVAGLHDKPEALFP-YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 4e-17
Identities = 101/805 (12%), Positives = 248/805 (30%), Gaps = 95/805 (11%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQS 1477
+ LL + +R +E + +LS + L E+ +
Sbjct: 5 EFAQLLENSILSPDQNIRLTSE----TQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 1478 SVQLL-----GAMAYCAPQQLSQCLPKIVP--------KLTEVLTDTHPKVQSAGQTALQ 1524
+ L + Q + + ++ P L P++ +A +
Sbjct: 61 AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120
Query: 1525 QVGSV-IKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFVNTVDAPSL-----AL 1576
+ + + + L+ ++ SL L + +L +
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180
Query: 1577 LVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635
L+ IV E S + A + + + + L+ V + EV
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695
++ A + ++ P + L + + A+ + F
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVE----------FW 290
Query: 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755
+ + + +++ A L + + S+ N L +L + D++ +V
Sbjct: 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN-LLNLLTRQNEDPEDDDWNVSM 349
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
+A + ++ L +L VE I DNWR R+++V G ++
Sbjct: 350 SAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM------------ 397
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+G + + L +L + +D SL V++ I +
Sbjct: 398 ------DGPDKVQRTYYVHQAL-----PSILNLM----NDQSLQVKETTAWCIGRIADSV 442
Query: 1876 PKTL--KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIP 1926
+++ ++ +P ++ + L + + LV +L E P+++
Sbjct: 443 AESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501
Query: 1927 ILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
L + M + + + L ++
Sbjct: 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + + + + + + + +D + ++L + +A +
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED----- 616
Query: 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV 2104
F +A+ ALA G G +L T P LL A+ D V A ++
Sbjct: 617 -----DVF--YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 2105 IDEEG---VESLVSELLKGVGDNQA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
++E+ +++++ L + + + A ++ + + G N + ++++ +
Sbjct: 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASV 2184
+ A + +V+ +V
Sbjct: 730 AAQNTKPENGTLEALDYQIKVLEAV 754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 1e-12
Identities = 91/733 (12%), Positives = 206/733 (28%), Gaps = 94/733 (12%)
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPL 1020
+ IV G + S + + + + + I + +R G + ++Q++ +
Sbjct: 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239
Query: 1021 PRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNA 1080
+ L ++ ++ + + + L + + + + V +
Sbjct: 240 VQAAAFGCLCKIMSKYYTF---MKPYMEQALYALT-------IATMKSPNDKVASMTVEF 289
Query: 1081 VKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALS 1140
I E + S + + S+ + ++ +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED------- 342
Query: 1141 HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
++NV ++A L + I + I W R+ +A
Sbjct: 343 -DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---------DNWRNREAAVMA 392
Query: 1201 LHSAAD----VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DNVSL 1254
S D V RT + + +++ + D + V+ I D D
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-----PKVHAVVDKLLDVL 1309
L + + D K V L + LA+ A+VD L+
Sbjct: 452 LPGVVQA-CLIGLQDHPK---VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507
Query: 1310 NTPS----------EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK-------- 1351
N A+ V + ++ + ++ +L + +
Sbjct: 508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567
Query: 1352 -YGERRGAAFGLAGVVKGFGISSLKKYG--IAATLREGLADRNSAKRREGALLAFECLCE 1408
E + + V SS++ + L ++SA + A L
Sbjct: 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL---VLPSLLK 1465
LG+ FE Y+ P LL A + V A + + L + ++ L +
Sbjct: 628 SLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687
Query: 1466 GLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
+ + R K + + + G +A L I+
Sbjct: 688 MISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQ 747
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
+V + ++ GL D + + + Q + +
Sbjct: 748 IKV-----LEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ-------------FIAQVAED 789
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPI--PEVRSV 1638
T + A ++G++ ++ P I ++ +K+ + +
Sbjct: 790 PQLYSEDATSRAAVGLIGDIAAMF--PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDT 847
Query: 1639 AARAIGSLIRGMG 1651
A A R +
Sbjct: 848 ARWAREQQKRQLS 860
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 56/475 (11%), Positives = 149/475 (31%), Gaps = 44/475 (9%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQ 1793
+ + + + ++++R + ++ + + + ++N R
Sbjct: 4 AEFAQLLENSILSPDQNIRLTSETQ----LKKLSNDNFLQFAGLSSQVLIDENTKLEGRI 59
Query: 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853
+ L + L + T+ + I + + +N++
Sbjct: 60 LAALTLKNELVS---------------KDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL 104
Query: 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG-RALG-- 1910
+ + AA + I + P LM ++ + + E + A ALG
Sbjct: 105 VSIEPRIANAAAQLIAAIADI--ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162
Query: 1911 -ELVRKLGERVLPSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASAGKSQLL-SFM 1963
E + ++ S IL ++ + S + R L++ + +
Sbjct: 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGER 222
Query: 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHALEDDQTSDT 2020
+ L+ + A +EV+ +A + +++ + L A
Sbjct: 223 NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKV 282
Query: 2021 ALDGLKQILSVRTTAV-LPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPAL 2079
A ++ ++ + + + L + PL ++N A + + +L +L
Sbjct: 283 ASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN------FALSSIKDVVPNLLNLLTRQ 336
Query: 2080 LSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139
DDD +V A + +E ++ + + + + R ++ G
Sbjct: 337 NEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSI 396
Query: 2140 YKN-SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
K+ + +++ L++D + R+ SV + + P
Sbjct: 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 8e-19
Identities = 107/661 (16%), Positives = 194/661 (29%), Gaps = 197/661 (29%)
Query: 1244 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 1303
+D + +FE+ ++ D+ + I + H+ V
Sbjct: 14 HQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGT-L 65
Query: 1304 KLLDVL-NTPSEAVQRAVSSCLSP----LMQSMQDE--APTLVSRL----LDQLMKS--- 1349
+L L + E VQ+ V L LM ++ E P++++R+ D+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1350 ---------DKYGERRGAAFGL---AGVV----KGFGISSLKKYGIAATLREGLADRNSA 1393
Y + R A L V+ G G + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLS-------- 173
Query: 1394 KRREGALLAFEC----LCEKLGRLFEP-YVIQMLPLLLVAF-------SDQVVAVR---E 1438
+ L L P V++ML LL SD ++
Sbjct: 174 ---YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498
+ + R ++ + LVL + + A C
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL--------LNVQ-----NAKAWNAFNL-------SC-- 266
Query: 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA--SLVPTLLMGLTDPNDHTKYS 1556
KI+ LT T +QV + SL M LT
Sbjct: 267 KIL------LT-----------TRFKQVTDFLSAATTTHISLDH-HSMTLTPDE-----V 303
Query: 1557 LDILLQTTFVNTVDAPSLA-----LLVPIVHRGLRERSA-------ETKKKAAQIVGNMC 1604
+LL+ D P + I+ +R+ A K I+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESS 362
Query: 1605 SLVTEPKDMIP-YIGL-LLPE-VK---KVLV----DPIP-EVRSVAARAIG-SLIRGMGE 1652
V EP + + L + P +L D I +V V + SL+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1653 EN---FPDLVSWLLD-ALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--C 1705
E+ P + L+ +K +N + RS + + T + ++P +
Sbjct: 423 ESTISIPSI---YLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1706 S----HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQQVL----------PAILDGLAD- 1748
S H + +TLF+ + F ++ L+Q + +IL+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1749 --------ENESVRDAALGA--------GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792
+N+ + + A L+ T L + L A ++ IF + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 1793 Q 1793
Q
Sbjct: 588 Q 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 85.7 bits (211), Expect = 2e-16
Identities = 110/721 (15%), Positives = 205/721 (28%), Gaps = 240/721 (33%)
Query: 723 MSITPKDTYVAF-EKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
KD F + + + DC D+Q P+ +LS E+ I I+ +K+
Sbjct: 14 HQYQYKDILSVFEDAFVDNF-DCK--------DVQDM--PKSILSKEE---IDHIIMSKD 59
Query: 782 TKQSKGR-FRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD---IGKSTKKADKGKTA 837
R F + + E + V + + + K + +
Sbjct: 60 AVSGTLRLFWTLLSK------------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 838 K----EEARELLLNEEASIREKVQGVQRNLSLML---SALGEMAIANPVFAHSQL----P 886
E R+ L N+ K V R L L AL E+ A V L
Sbjct: 108 MTRMYIEQRDRLYNDNQVFA-KYN-VSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 887 SLVKFV--DPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSD 944
+ V +Q + + + + L C + L++ L + SD
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSD 218
Query: 945 L---IPSVGEAAKNKESL---------CLF-------ERIVNGLTVSCKSGPLPVDSFTF 985
I + + + CL + N +SCK
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----------- 267
Query: 986 VFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGS 1045
ILL+ + + D + H+
Sbjct: 268 -------ILLTTRFKQVTDFLSAATTTHI------------------------------- 289
Query: 1046 ALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA 1105
+L+ + L P+EV S L + L+ + LP + + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLL-----------LKYLD-------CRPQDLPREVLTTNPRRLS 331
Query: 1106 VHDPEKSVAEAAED---IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAE--ALATALDE 1160
+ +AE+ D WD + + + L + S NV L AE + L
Sbjct: 332 I------IAESIRDGLATWDNWKH---VNCDKLTTIIESS-LNV-LEPAEYRKMFDRLSV 380
Query: 1161 YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL 1220
+P S L + W + D+ V++ L
Sbjct: 381 FPPSAHIPTILLSLI---------------WFD--------------VIKSDVMVVVNKL 411
Query: 1221 ISRALADTNA------------DVRGRMLNAGIM---IIDKH----GRDNVSLLFPIFEN 1261
+L + +++ ++ N + I+D + D+ L+ P +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1262 Y--------LNKKASDEEKYDLVR---------EGVVIFTGALA---------------- 1288
Y L K E+ L R E +
Sbjct: 472 YFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1289 -KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM 1347
++ +DPK +V+ +LD L E + + + L L ++ E + Q+
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIFEEAHKQVQ 588
Query: 1348 K 1348
+
Sbjct: 589 R 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 3e-13
Identities = 92/610 (15%), Positives = 183/610 (30%), Gaps = 154/610 (25%)
Query: 143 HIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKS 202
HI+M + + F+ L S+ ++ + + +E+ + SP ++ +
Sbjct: 53 HIIMSKD-AVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQ 104
Query: 203 PSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKR 262
PS+ + +Y++ + ++ F ++SR + L ++ L+
Sbjct: 105 PSMMTR-------MYIEQR-----DRLYNDNQVFAKY--NVSRLQ-PYLKLRQALLELRP 149
Query: 263 NPEIILES---IGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKS 319
++++ G K+ + L V LS K L + +
Sbjct: 150 AKNVLIDGVLGSG---KTW---V------ALDVCLSYKVQCKMDFKIFWLNL-KNCNSPE 196
Query: 320 SNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK-YLNSL------- 371
+ + L+ + Y I + RI + EL + K Y N L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQ 254
Query: 372 -SLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDL-----LSFFASGLKEK 425
+ F LSC K IL + + K+ D + + L + L
Sbjct: 255 NAKAWNAFNLSC---------K--IL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 426 EALRRGHLRCLRVICTNTDA------VLQVSSLLGPL-IQLVKTGFTKAVQRLDGIYAFL 478
E L + + VL + P + ++ + D + +
Sbjct: 302 EVKS------LLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDN-WKHV 350
Query: 479 IVGKIAAADIKA-----EETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVV 533
K+ I++ E ++ L + +PT ++S + D + V ++V
Sbjct: 351 NCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 534 LLVEHS----HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITS--------- 580
L ++S T S + + L + H R I+
Sbjct: 410 KLHKYSLVEKQPKESTIS---IPSIYLELKVKL--ENEYALH---RSIVDHYNIPKTFDS 461
Query: 581 ---VP-------------HLSEALLLE----FSN-FLSL--VGEKIIISKT------SDT 611
+P HL E F FL + +KI T S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 612 DDFVDSQV--PFL----PSVEVQVKTL---LVIASVALARGPSAS-ARVIFCSHHPSIVG 661
+ + P++ P E V + L L R+ + +I
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 662 TGKRDAVWQR 671
+ QR
Sbjct: 582 EAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 4e-10
Identities = 96/677 (14%), Positives = 178/677 (26%), Gaps = 245/677 (36%)
Query: 32 DVTSLIRNTEMSPEIASFL--------VDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTF 83
DV + ++ EI + +F T + +K V++V+ F
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---F 93
Query: 84 MKT-FAAALVQAMEKQSKFQS---------------HVGCYRL-----LKWSCLL-LSKS 121
+ + Q + +V RL L+ LL L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR-QALLELRPA 150
Query: 122 QFATV------SKNALCRVAAAQASLLHIVMQR--------SFRERRACK------QTFF 161
+ + K + A L + V + + + + + Q
Sbjct: 151 KNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 162 HL----FSQSPDIYKTY---TDELKDA--RI----PYKHSPELICLLLEFLS--KSPSLF 206
+ ++ D ++ R+ PY++ CLL+ L ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLV--LLNVQNAKAW 259
Query: 207 E----KCRPIFL--DIYVKAVLNAK-------EKPMKGL----SESFLPLFTHMSREDFQ 249
C+ + V L+A + L +S L + +D
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-- 317
Query: 250 SIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGAL 309
LP +L NP L I ++ L +H + + T
Sbjct: 318 ---LPRE--VLTTNP-RRLSIIAESIRD-GLATWDN-----------WKHVNCDKLT--- 356
Query: 310 TIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLN 369
TII S P MF + +V FP ++
Sbjct: 357 TIIE-SSLNVLEPAEYRKMFDRL-SV---------FP-----------PSAHIPTI---- 390
Query: 370 SLSLTICKFLLSCYKDEGNEEV---KLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
+ L+ + + V KL S V K S I + L+ +
Sbjct: 391 ----LLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEY 443
Query: 427 ALRR---GHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDG-IYAFLIVGK 482
AL R H + ++ L P LD Y+ + G
Sbjct: 444 ALHRSIVDHYNIPKTFDSDD---------LIPP-------------YLDQYFYSHI--GH 479
Query: 483 -IAAADIKAEETVTKEKL-----WSLVSQNEPSLVPTAMISKLSVDD--CMACVELLVVL 534
+ + E + + + K+ D A +L L
Sbjct: 480 HLKNIE-HPERMTLFRMVFLDFRF--------------LEQKIRHDSTAWNASGSILNTL 524
Query: 535 LVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIIT-SVPHLSEALLLEFS 593
++ + I + P E L+
Sbjct: 525 Q-----------------------------QLKFY-----KPYICDNDPKY-ERLVNAIL 549
Query: 594 NFLSLVGEKIIISKTSD 610
+FL + E +I SK +D
Sbjct: 550 DFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 5e-10
Identities = 84/528 (15%), Positives = 160/528 (30%), Gaps = 156/528 (29%)
Query: 1011 YKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKD 1070
+ HMD Y ++ ++ A + C +V + +K+
Sbjct: 4 HHHMD-------FETGEHQYQYKDILSVFEDAFVDNFD--C-----KDVQDMPKSILSKE 49
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-WIAVHDPEKSVAEAAEDIWDRYGYDF- 1128
+ I + + + L W + E+ V + E++ R Y F
Sbjct: 50 E---------IDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 1129 --------------GTDYSGLFKALSHSN-----YNV-RLAAAEALATALDEYPDSIQGS 1168
Y L + N YNV RL L AL E +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKN- 152
Query: 1169 LSTLFSLYIRDIGLGGDNVDAG--WLGRQGIALALHSAADVLRTKDLPVIMTFLI---SR 1223
+ G+ G +G W+ A DV + + M F I +
Sbjct: 153 ----VLID----GVLG----SGKTWV-----------ALDVCLSYKVQCKMDFKIFWLNL 189
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
++ V ML + ID + I L + E L++ +
Sbjct: 190 KNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKP--Y 243
Query: 1284 TGALAKHLAKDD---PKVHAVVD---KLLDVLNTPSEAVQRAVSS------CLSPLMQSM 1331
L L + K + K+L L T + V +S+ L ++
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 1332 -QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390
DE +L+ + LD + L V + + IA ++R+GLA
Sbjct: 299 TPDEVKSLLLKYLD--CRPQD----------LPREVL--TTNPRRLSIIAESIRDGLATW 344
Query: 1391 NSAKRREGALLAFECLCEKLGRLFE-------PYVIQMLPLLLVAFSD------QVVAV- 1436
++ K C+KL + E P + + L F ++++
Sbjct: 345 DNWKHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 1437 -REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1483
+ + ++++L SL++ + K+S++ +
Sbjct: 396 WFDVIKSDVMVVVNKLHKY-------SLVEK------QPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 4e-07
Identities = 80/552 (14%), Positives = 173/552 (31%), Gaps = 165/552 (29%)
Query: 1371 ISSLKKYGIAATLREGLADR------NSAKRREGALLAFECLCEKLGRLFEPYVIQML-- 1422
+ + + + L+ S G L F L K + + +V ++L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1423 --PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
L+ E +MM+++ + D+ + Q
Sbjct: 90 NYKFLMSPI---------KTEQRQPSMMTRMYIEQR------------DRLYN----DNQ 124
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKV-----QSAGQTALQQVGSVIKNP 1533
+ A +S+ + KL + L V +G+T + V +
Sbjct: 125 VF------AKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSY 174
Query: 1534 EIASLVPT----LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589
++ + L + N ++ ++ +LQ +D + + LR S
Sbjct: 175 KVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS 229
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ + + L+ PY LL VL + ++ A + I
Sbjct: 230 IQAELR---------RLLKSK----PYENCLL-----VL-LNVQNAKAWNAFNLSCKI-- 268
Query: 1650 MGEENFPDLV----SWLLDALKSDN-SNVERSGAAQGLSE-----VLA-ALGTVYFEHIL 1698
L+ + D L + +++ + L+ +L L + L
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--L 318
Query: 1699 PDIIRNCSHQR-----ASVRDGYLTL--FKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
P + + +R S+RDG T +K++ + L ++ + L+ L + E
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVL-EPAE 370
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL-GDLLFKVAGTS 1810
R + + L +F + I + L+ D++
Sbjct: 371 -YR-----------KMF--DRL---------SVFPPSAHIPTILLSLIWFDVIK------ 401
Query: 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWK 1869
SD + H +++E + E ++ + ++ + + + ALH +
Sbjct: 402 --------SDVMVVVNKLHKYSLVE---KQ-PKESTISIPSIYLELKVKLENEYALH--R 447
Query: 1870 TIVA--NTPKTL 1879
+IV N PKT
Sbjct: 448 SIVDHYNIPKTF 459
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-05
Identities = 99/633 (15%), Positives = 177/633 (27%), Gaps = 206/633 (32%)
Query: 1650 MGEEN--FPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
GE + D++S DA + +V+ +L+ +HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-----PKSILS---KEEIDHII------- 55
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL----PAILDGLADENESVRDAALGAG 1761
G L LF L Q ++++VL ++ + E R ++
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSM--- 107
Query: 1762 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV---ELLGDLLFKVAGTSGKALLEGG 1818
+ Y D ++NDN + +V + L +ALLE
Sbjct: 108 --MTRMYIEQ---------RDRLYNDNQVFAKYNVSRLQPYLKLR--------QALLE-- 146
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV-WKTI-VANTP 1876
+ G VLG K +A V + + + W + N+P
Sbjct: 147 -LRPAKNVLIDG-----VLGSGK--TWVAL--DVCLSYKV-QCKMDFKIFWLNLKNCNSP 195
Query: 1877 KTLKEIMPVLMNTL---ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933
+T+ E++ L+ + +S + SS + EL R L + L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCL- 247
Query: 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTL 1992
+ L V ++ AF+
Sbjct: 248 -----------LVLLNV------------------------QNAKAWN-------AFN-- 263
Query: 1993 FKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052
LL T KQ+ + A HI L H ++
Sbjct: 264 LSC----------KILL------TTRF------KQVTDFLSAATTTHI--SLDHHSMTLT 299
Query: 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES 2112
L + Q L +E T + S
Sbjct: 300 PDEVKSLLLKYLD----------------------CRPQDLPREVLTTNPRRL------S 331
Query: 2113 LVSELLKG-----------VGDNQASIRRSS-AYLIGYFYKNSKLY-----LVDEAPNMI 2155
+++E ++ D +I SS L Y+ K++ A
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPT 389
Query: 2156 STLIVLLSDSDSTTVAAAWEALSR--VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 2213
L ++ D + V L + +V PKE I I + + E +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR- 447
Query: 2214 GPILIPGFCLPKALQP--LLPIFLQVFVLYTFS 2244
++ + +PK L+P +L Y +S
Sbjct: 448 --SIVDHYNIPKTFDSDDLIPPYLDQ---YFYS 475
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 89.5 bits (221), Expect = 9e-18
Identities = 100/718 (13%), Positives = 222/718 (30%), Gaps = 87/718 (12%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+S +++ + EA+ + S + I G + +
Sbjct: 140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI---LTAIIQGMRKEEPSNNVKLAATN 196
Query: 1200 ALHSAADVLRT-KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLL 1255
AL ++ + + D F+ + A + VR L + I+ + + + +
Sbjct: 197 ALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM 256
Query: 1256 FPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA 1315
P + + + V + ++ ++ + + + P
Sbjct: 257 GPALFAITIEAMKSDI------DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT 310
Query: 1316 VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK 1375
+ L L+ + D+ D + + A L + +
Sbjct: 311 SKFYAKGALQYLVPILTQTLTKQ-----DENDDDDDWNPCKAAGVCLMLLATCCEDDIVP 365
Query: 1376 KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAFSDQVV 1434
+ ++E + + + + R+ A++AF C+ E +P VIQ +P L+ D V
Sbjct: 366 H--VLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 422
Query: 1435 AVREAAECAARAMMSQL-----SAQGVKLVLPSLLKGLEDKA-------------WRTKQ 1476
VR+ A + L + + +L L++GL +
Sbjct: 423 VVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAY 482
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---- 1532
+ + A LS IV KL E + +A + + ++KN
Sbjct: 483 EAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD 542
Query: 1533 --PEIASLVPTLL--MGLTDPNDHTKYSLD-----ILLQTTFVNTVDAPSLALLVPIVHR 1583
P + ++ + + S LQ+ T+ + +
Sbjct: 543 CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ 602
Query: 1584 -------------GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630
S ++ A V + ++ + + Y+ P + L +
Sbjct: 603 ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGIGLKN 660
Query: 1631 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEV 1685
+V A +G L R + +++ LL+ L ++N + + ++
Sbjct: 661 YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDI 720
Query: 1686 LAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744
A+G F+ L ++ +A V + YL + + + I+
Sbjct: 721 ALAIGG-EFKKYLEVVLNTLQQASQAQVDKSDYDMVDYL-----NELRESCLEAYTGIVQ 774
Query: 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
GL + E+V + LV+ L + D D + + L+GDL
Sbjct: 775 GLKGDQENVHPDVM-----LVQPRVEFILSFIDHIAGDEDHTDG--VVACAAGLIGDL 825
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 8e-16
Identities = 118/860 (13%), Positives = 242/860 (28%), Gaps = 120/860 (13%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L EAA+ + + + + + L L + L + + ++ +
Sbjct: 6 ILEKTVSPDRLELEAAQ----KFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 1483 ------------GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ ++ + L + SA Q + I
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI 121
Query: 1531 KNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRGL 1585
+ L+P L+ +T+PN H K S + ++ + +G+
Sbjct: 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181
Query: 1586 R--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
R E S K A + N D ++ V + P VR A + +
Sbjct: 182 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
++ + + L + A QG+ D+
Sbjct: 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN------VCDEEMDLAI 295
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
S R T Y +L L Q L + D++ + AA +
Sbjct: 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE------- 1816
L +P +LP +++ I N +WR R ++V G +L + K L+
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 1817 GGSDDE-----GASTEAHGR---AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868
D + GR + E D L + V +
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474
Query: 1869 KTIVANT--------------PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
++ L +++ L+ + + + A L+
Sbjct: 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534
Query: 1915 KLG----------ERVLPSIIP-----------ILSRGLKDPSASRRQGVCIGLSEVMAS 1953
+ ++ I+ I S + + +C L V+
Sbjct: 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSI--LEVRESAGLAFSTLFKSAG---MQAIDEIVPTL 2008
L D ++ ++ + V+E A +A STL + G ++ ++ P L
Sbjct: 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL 654
Query: 2009 LHALEDDQTSDT-----ALDG---------LKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054
L++ L G + +L ++ + VH +
Sbjct: 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQIL 714
Query: 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV 2114
G +A G +L +L L A + + E
Sbjct: 715 SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RESCLEAY 769
Query: 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST--TVAA 2172
+ +++G+ +Q ++ + ++S + + D D T VA
Sbjct: 770 TGIVQGLKGDQENVHPDVMLVQPR------------VEFILSFIDHIAGDEDHTDGVVAC 817
Query: 2173 AWEALSRVVASVPKEVQPSY 2192
A + + + K+V
Sbjct: 818 AAGLIGDLCTAFGKDVLKLV 837
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 5e-15
Identities = 103/774 (13%), Positives = 232/774 (29%), Gaps = 107/774 (13%)
Query: 1391 NSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDTH--------------------PKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW- 380
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ AA + EP + P + +P + +++ DP VR AA +G + +
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS 1706
E L+ L++ L V + +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLS-AEPRVASNVCW-----------------AFSSLAEAAY 482
Query: 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766
D L + Q L D ++R +A + +V+
Sbjct: 483 EAADVADDQEEPATYCL-----SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826
+ A P + + E L +L + + +D +
Sbjct: 538 NSAKDCYPAVQKTTLVIM------------ERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 1827 EAHGRAIIEVLGRDKR---NEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKE 1881
+ +V +D + V+A+L + S V++ AL T+V +
Sbjct: 586 ATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645
Query: 1882 IMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSA 1937
M L L + + A +G+L R L ++P ++ +L L + +
Sbjct: 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV 705
Query: 1938 SR--RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + + + +A A + +++ ++ T++ A + + + L
Sbjct: 706 HRSVKPQILSVFGD-IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL--- 761
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH 2055
++ E ++ L+ DQ + L Q +L I +
Sbjct: 762 --RESCLEAYTGIVQGLKGDQENVHPDVMLVQPR---VEFILSFIDHIAGDEDHTDGVVA 816
Query: 2056 A----LGALAEVAGPGL--NFHLGTILPALLS-AMGDDDMDVQSLAKEAAETVT 2102
+G L G + ++ LL+ ++LA+ A + +
Sbjct: 817 CAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELR 870
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-12
Identities = 80/555 (14%), Positives = 166/555 (29%), Gaps = 75/555 (13%)
Query: 1144 YNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203
+N AA L D I + +I++ W R +A
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---------PDWRYRDAAVMAFGC 392
Query: 1204 AADVLRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVS-----LL 1255
+ L ++ + + D + VR I + ++ L
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 1256 FPIFENYLNKKASDEEK--------YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
L+ + + E + +V KLL+
Sbjct: 453 LQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPT---LVSRLLDQLMK----------SDKYGE 1354
+ P SS LM+ +++ A V + +M+ +
Sbjct: 513 TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572
Query: 1355 RRGAAFGLAGVVKGFGISSLKKYG-----------IAATLREGLADRNSAKRREGALLAF 1403
R L ++ + L+K +A+ LR + S +E AL+A
Sbjct: 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQV-VAVREAAECA----ARAMMSQLSAQGVKL 1458
L E LG F Y+ P L + + V AA RA+ S +
Sbjct: 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDE 691
Query: 1459 VLPSLLKGLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
V+ LL+ L ++ K + + G +A + + L ++ L + K
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751
Query: 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576
L ++ ++ GL ++ + ++ L+
Sbjct: 752 YDMVDYLNELRE-----SCLEAYTGIVQGLKGDQENVHPDVMLVQP------RVEFILSF 800
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPIP 1633
+ I + + AA ++G++C+ KD++ + ++ + +
Sbjct: 801 IDHIAGD--EDHTDGVVACAAGLIGDLCTAF--GKDVLKLVEARPMIHELLTEGRRSKTN 856
Query: 1634 EVRSVAARAIGSLIR 1648
+ +++A A L +
Sbjct: 857 KAKTLARWATKELRK 871
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 5e-10
Identities = 60/462 (12%), Positives = 132/462 (28%), Gaps = 71/462 (15%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLK------------EIMPVLMNTLISSLASSS 1898
+ S R AA K + + +K + N ++ +L + +
Sbjct: 44 LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET 103
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR--RQGVCIGLSEVMASAGK 1956
+ G ++ P +IP L + +P+++ ++ + +
Sbjct: 104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163
Query: 1957 SQLLSFMDELIPTI--RTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL-- 2012
QL +E++ I + V+ +A A + E + +
Sbjct: 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223
Query: 2013 -----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
D + AL L +I+S+ + ++ P L + + A + + EVA G
Sbjct: 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD----IDEVALQG 279
Query: 2068 LNFH-----------------------------------LGTILPALLSAM-------GD 2085
+ F L ++P L + D
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339
Query: 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SK 2144
DD + A + +++ V ++ + + + + R ++ G +
Sbjct: 340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399
Query: 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV-QPSYIKVIRDAISTS 2203
L + TLI L+ D A + R+ +P+ Y+ + +
Sbjct: 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459
Query: 2204 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQVFVLYTFSP 2245
E R + + Y S
Sbjct: 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS 501
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 1e-16
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 46/271 (16%)
Query: 1828 AHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886
A+G + ++L K +E VL L + D +V + A+ + I + ++ L
Sbjct: 15 ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKL 74
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
+ L S + Q +A G++ ++ E V +IP+L + + V
Sbjct: 75 FSLLKK---SEAIPLTQEIAKAFGQMAKEKPELVKS-MIPVLFANYRIGDEKTKINVSYA 130
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L E+ + M ++ + L E + +A + ++ + ++ +P
Sbjct: 131 LEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNPFLP 184
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066
+++ L D VR +A AL LA
Sbjct: 185 RIINLLHDGDE------------IVRASA------------------VEALVHLAT---- 210
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
LN L ++ L + D V KE
Sbjct: 211 -LNDKLRKVVIKRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 3e-16
Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 15/265 (5%)
Query: 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486
++ ++ +REA + A+ + VL L++ L+D W ++++ ++ +A
Sbjct: 1 MSMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60
Query: 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 1546
L K+ L + A Q+ K + S++P L
Sbjct: 61 KTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKSMIPVLFANY 116
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
++ TK ++ L+ + + +A +V L ++ E K A + M
Sbjct: 117 RIGDEKTKINVSYALEE--IAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173
Query: 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666
K + P+ LP + +L D VR+ A A+ L + +V L+ L
Sbjct: 174 -NSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHL--ATLNDKLRKVVIKRLEEL 226
Query: 1667 KSDNSNVERSGAAQGLSEVLAALGT 1691
D S++ +G+S +L G
Sbjct: 227 N-DTSSLVNKTVKEGISRLLLLEGH 250
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)
Query: 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793
Y + VL +++ L D+ +V A+ V+ + P+L ++ + Q
Sbjct: 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR------DKRNEVLA 1847
+ G + K K+++ + E + L ++
Sbjct: 89 EIAKAFG-QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907
+ S + + AL+ + + N+ K + +P ++N L R A
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL----LHDGDEIVRASAVE 203
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1957
AL L L +++ +I L L D S+ + V G+S ++ G S
Sbjct: 204 ALVHLA-TLNDKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLLLEGHS 251
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 4e-11
Identities = 41/292 (14%), Positives = 102/292 (34%), Gaps = 53/292 (18%)
Query: 1745 GLADENESVRDAALGAGH----VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+ +E +R+A H +++ Y + L L+ ++D D W + ++++ ++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDD----DLWTVVKNAISIIM 57
Query: 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1860
+ + E +++ L +++ ++ +
Sbjct: 58 VI--------------------AKTREDLYEPMLKKL-----------FSLLKKSEAIPL 86
Query: 1861 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920
Q + + P+ +K ++PVL + + + AL E+ + +
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPVLFA----NYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
I+ L + + + + ++ K +++ +P I L D
Sbjct: 143 AS-IVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEI 196
Query: 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED--DQTSDTALDGLKQILS 2030
VR SA A L + + ++V L L D + T +G+ ++L
Sbjct: 197 VRASAVEALVHL--ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 2e-10
Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 16/240 (6%)
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILS 2030
++ + ++RE+ + + ++ L+ L+DD + A+ + I
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---PGLNFHLGTILPALLSAMGDDD 2087
R P +L KL L + +A+ G + +++P L + D
Sbjct: 62 TREDLYEP-MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120
Query: 2088 MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147
+ A E + + + S+V + + + + ++ I +NS Y+
Sbjct: 121 EKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYV 179
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207
P +I LL D D A+A EAL + K KV+ + D
Sbjct: 180 NPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTS 230
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 1e-08
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 18/236 (7%)
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
++ + L + K A I+ + T P + L +KK +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKK---SEAIPLT 87
Query: 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696
A+A G + + E ++ L + + + + L E+ A +
Sbjct: 88 QEIAKAFGQMAKEKPEL-VKSMIPVLFANYRIGDEKT-KINVSYALEEIAKANPML-MAS 144
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
I+ D + S + + L ++G Y+ LP I++ L D +E VR +
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI----EAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 1757 ALGA-GHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810
A+ A H+ + + L + D + + ++ E + LL +S
Sbjct: 201 AVEALVHLATLNDKLRKVVIKRLEELND----TSSLVNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 34/258 (13%), Positives = 89/258 (34%), Gaps = 21/258 (8%)
Query: 1931 GLKDPSASRRQGVCIG--LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
+++ R+ + G L +++ A + ++ + L D + V ++A
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDE------SVLKKLIELLDDDLWTVVKNAISI 55
Query: 1989 FSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT---ALDGLKQILSVRTTAVLPHI--LPK 2043
+ K+ + ++ L L+ + Q+ + V I L
Sbjct: 56 IMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFA 114
Query: 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTL 2103
+ + AL E+A + +I+ +S + + + + A E +
Sbjct: 115 NYRIGDEKTKINVSYALEEIA-KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM-G 172
Query: 2104 VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 2163
+ V + ++ + D +R S+ + + + D+ ++ + L+
Sbjct: 173 ENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-----DKLRKVVIKRLEELN 227
Query: 2164 DSDSTTVAAAWEALSRVV 2181
D+ S E +SR++
Sbjct: 228 DTSSLVNKTVKEGISRLL 245
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-08
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 23/239 (9%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
L + L + V A + D + L LFSL + + +
Sbjct: 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS-----EAIPL----T 87
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
Q IA A A +I + + + A +++ + N L
Sbjct: 88 QEIAKAFGQMAKEKPELVKSMIPVLFA--NYRIGDEKTKINVSYA----LEEIAKANPML 141
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ I ++++ +S + + + F A+ ++ K V+ + +++++L+ E
Sbjct: 142 MASIVRDFMSMLSSKNRE---DKLTALNFIEAMGENSFKY---VNPFLPRIINLLHDGDE 195
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373
V+ + L L D+ +V + L++L + + G++ ++ G SS
Sbjct: 196 IVRASAVEALVHLATL-NDKLRKVVIKRLEELNDTSSL-VNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 21/129 (16%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 2082 AMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141
+M +++ D++ ++I + ES++ +L++ + D+ ++ +++ +I K
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTV-AAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200
+ D M+ L LL S++ + +A ++ P+ V+ I V+
Sbjct: 62 TRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKS-MIPVLFANY 116
Query: 2201 STSRDKERR 2209
+K +
Sbjct: 117 RIGDEKTKI 125
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 29/276 (10%)
Query: 1224 ALADTNADVRGRMLNA----GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ + D+R + N I+I+ K+ + L + + D+ V +
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLD--------DDLWT--VVKN 51
Query: 1280 VVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ +AK ++ KL +L + + + ++ + + + ++
Sbjct: 52 AISIIMVIAKTREDL---YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSM 108
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ L D+ + ++ L + K + I L+ +N +
Sbjct: 109 IPVLFANYRIGDEK-TKINVSYALEEIAKANPMLMAS---IVRDFMSMLSSKNREDKLTA 164
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
E +G YV LP ++ D VR +A A ++ L+ + K+
Sbjct: 165 LNF-----IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA-VEALVHLATLNDKLRKV 218
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
V+ L+ L D + ++ + + + S
Sbjct: 219 VIK-RLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 3e-14
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 12/210 (5%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATL 1383
+ +Q L + + + A L + +S+ TL
Sbjct: 35 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL 94
Query: 1384 REGLADRNSAKRREGALL---AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
R + N A + L E + + + + V +P LL+ + +R +
Sbjct: 95 R--FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+ + + P LL L+ K R + + ++ A + +
Sbjct: 153 RDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK-SLSV 208
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ + D V++A L
Sbjct: 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFE 238
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 9e-12
Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504
+SQL SL+ L K ++ +++ L +A +P+ L ++
Sbjct: 33 DEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWC 92
Query: 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDHTKYSL 1557
T +T+P + + +I++ E+++ VP LL+ + D+ + S+
Sbjct: 93 TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
+ D + P++ L+ ++A + + ++ +T
Sbjct: 153 ----RDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY---ITNAGISPLKS 205
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658
+ V + D VR+ A + + + G++ +
Sbjct: 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 4e-06
Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+ + + + Q + +P +L + +++R + +VL + + P
Sbjct: 114 IVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTP 170
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLL 1803
+ D + + N R R + ++ +
Sbjct: 171 MLLDALKSKNARQRSECLLVIEYYI 195
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 7e-05
Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 15/191 (7%)
Query: 1989 FSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHILPKLVHL 2047
F FK + A+D L+ + S + D L + ++R P L K++
Sbjct: 56 FHKDFKQ-HLAALDS----LVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE- 109
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
+ + + P + +P LL G+ ++++ ++ ++ V+
Sbjct: 110 ----LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-- 163
Query: 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS 2167
G + LL + A R +I Y+ N+ + + + T+ + D D
Sbjct: 164 -GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPFVGDKDV 221
Query: 2168 TTVAAAWEALS 2178
AA L
Sbjct: 222 NVRNAAINVLV 232
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 8/206 (3%)
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
D H ++ + LL+ E + K ++ + L
Sbjct: 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL 117
Query: 1607 VTEPKDMI--PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664
+ + + + + +P + + +R+ + L +G + LLD
Sbjct: 118 IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLD 174
Query: 1665 ALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
ALKS N+ RS + + G + + + + +VR+ + +
Sbjct: 175 ALKSKNARQ-RSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLAD 1748
+ G Q ++ + +
Sbjct: 234 CFKFEGDQMWKAAGRMADKDKSLVEE 259
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 25/246 (10%)
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSP 1326
+DE L +L L D K H A +D L+ + +T ++ L
Sbjct: 32 TDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKW 91
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA--TLR 1384
+ P + ++L+ + +++ ++ A L
Sbjct: 92 CTLRFFETNPAALIKVLELCK-------------VIVELIRDTETPMSQEEVSAFVPYLL 138
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444
+ R L + +G ++M P+LL A + R
Sbjct: 139 LKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVI 191
Query: 1445 RAMMSQ--LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
++ +S V ++ + DK + +++ +L A Q+ + ++
Sbjct: 192 EYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
Query: 1503 KLTEVL 1508
K ++
Sbjct: 252 KDKSLV 257
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 44/306 (14%), Positives = 83/306 (27%), Gaps = 66/306 (21%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + L D N R ++ L ++ L + D N+ R
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARV---LQLRGGQDAVRLAIEFCSD----KNYIRRDIG 74
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+LG + + + +L M +D
Sbjct: 75 AFILGQI---------------------KICKKCEDNVFNIL-----------NNMALND 102
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
S VR A+ P +I+ + S+ R+ A+ +
Sbjct: 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQS----QITAFDKSTNVRRATAFAISVIND- 157
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
+ IP+L LKDP+ R ++ ++ L
Sbjct: 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ 202
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA 2035
D EVR A + S ++ L L+ + D ++ ++
Sbjct: 203 DKNEEVRIEAIIGLSYR-------KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLP 255
Query: 2036 VLPHIL 2041
VL +L
Sbjct: 256 VLDTML 261
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 48/310 (15%)
Query: 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
+QC +L +L D + + + LQ G V + +D N
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNY 68
Query: 1552 HTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
+ IL Q + +L + L ++SA + A + C
Sbjct: 69 IRRDIGAFILGQIKICKKCEDNVFNILN---NMALNDKSACVRATAIESTAQRCKKNPIY 125
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
++ + + D VR A AI + N + L++ LK N
Sbjct: 126 SP------KIVEQSQITAFDKSTNVRRATAFAISVI-------NDKATIPLLINLLKDPN 172
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
+V R+ AA ++ + I + + VR + L
Sbjct: 173 GDV-RNWAAFAIN--INKYDN---SDIRDCFVEMLQDKNEEVRIEAI-------IGLS-Y 218
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
++ ++VL + D L V D + A E T LP+L + D+
Sbjct: 219 RKD--KRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDNE 268
Query: 1791 IRQSSVELLG 1800
I S+++ L
Sbjct: 269 IITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 44/293 (15%)
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
L L +S +R + R L G + + D + RR L +
Sbjct: 28 LFRLLDDHNSLKRISSARVLQLR----GG---QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80
Query: 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 2009
+ + AL D VR +A + + K + + +IV
Sbjct: 81 IKICKKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-PKIVEQSQ 134
Query: 2010 HALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
D T+ + I T +L ++L K + + + A A+ + +
Sbjct: 135 ITAFDKSTNVRRATAFAISVINDKATIPLLINLL-KDPNGDVRNWAAFAIN-INKYDNS- 191
Query: 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
I + + D + +V+ EA ++ D+ + L EL + +
Sbjct: 192 ------DIRDCFVEMLQDKNEEVR---IEAIIGLSYRKDKRVLSVLCDEL------KKNT 236
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV-AAAWEALSR 2179
+ G ++ L +L D + +A + L R
Sbjct: 237 VYDDIIEAAGEL----------GDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 66/284 (23%)
Query: 1897 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956
S++ +++ A + G L + L R L D ++ +R L
Sbjct: 2 SNTYQKRKASKEYG-----LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQL-RGG--- 52
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016
+ + D R+ + + D + L + +D+
Sbjct: 53 -------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE--DNVFNILNNMALNDK 103
Query: 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076
++ VR TA + + + I+
Sbjct: 104 SAC-----------VRATA------------------IESTAQRCKKNP----IYSPKIV 130
Query: 2077 PALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
D +V+ + A ++++ D+ + L+ LLK D +R +A+ I
Sbjct: 131 EQSQITAFDKSTNVR---RATAFAISVINDKATIPLLI-NLLK---DPNGDVRNWAAFAI 183
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 2180
++ ++ + +L D + A LS
Sbjct: 184 NINKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 67/335 (20%)
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
SN + A++ + L L D L R
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDD-ELFRLLD-------------DHNSLKR------- 40
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA--GIMIIDKHGRDNVSLLFPIF 1259
S+A VL+ + + I +D N R I I K + ++L +
Sbjct: 41 ISSARVLQLRGGQDAVRLAI-EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99
Query: 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRA 1319
N D+ VR + + A+ K+ +V++ S V+RA
Sbjct: 100 LN-------DKSAC--VRATAI---ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRA 147
Query: 1320 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ +S + + L+ L+K R AAF + I+ I
Sbjct: 148 TAFAISVI------NDKATIPLLI-NLLKDPNGDVRNWAAFAI-------NINKYDNSDI 193
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
E L D+N R E A++ L + ++L +L V
Sbjct: 194 RDCFVEMLQDKNEEVRIE-AIIG-------LSYRKDK---RVLSVLCDELKKNTVYDD-- 240
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
A +L + + VL ++L +D T
Sbjct: 241 ---IIEAAG-ELGDKTLLPVLDTMLYKFDDNEIIT 271
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 7e-14
Identities = 63/385 (16%), Positives = 143/385 (37%), Gaps = 37/385 (9%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRA 1710
++ +++L L ++ S A+Q ++ + A + + ++P ++ N ++ +
Sbjct: 85 ANARREVKNYVLQTLGTETYR--PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS 142
Query: 1711 SV--RDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENES--VRDAALGAGHVLV 1765
+ ++ L Y+ + + Q Q+ ++L AI+ G+ E S V+ AA A +
Sbjct: 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202
Query: 1766 EHYATTSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--------VAGTSGK 1812
E ++ V + + R+R ++++ L ++ +
Sbjct: 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262
Query: 1813 ALLEG-GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+E SD + + + IE E+ A+ + +
Sbjct: 263 ITIEAMKSDIDEVALQG-----IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK----- 312
Query: 1872 VANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928
L+ ++P+L TL + AG L L + ++P ++P +
Sbjct: 313 -FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
+K+P R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 1989 FSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + AI D + LL L
Sbjct: 432 VGRICELLPEAAINDVYLAPLLQCL 456
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-07
Identities = 51/403 (12%), Positives = 119/403 (29%), Gaps = 62/403 (15%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLK------------EIMPVLMNTLISSLASSS 1898
+ S R AA K + + +K + N ++ +L + +
Sbjct: 44 LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET 103
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS--RRQGVCIGLSEVMASAGK 1956
+ G ++ P +IP L + +P+++ ++ + +
Sbjct: 104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163
Query: 1957 SQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL-- 2012
QL +E++ I + V+ +A A + E + +
Sbjct: 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223
Query: 2013 -----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH-------ALGAL 2060
D + AL L +I+S+ + ++ P L + + A + +
Sbjct: 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283
Query: 2061 AEVAGPGL------------------------NFHLGTILPALLSAM-------GDDDMD 2089
+ V + L ++P L + DDD +
Sbjct: 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Query: 2090 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SKLYLV 2148
A + +++ V ++ + + + + R ++ G + L
Sbjct: 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191
+ TLI L+ D A + R+ +P+
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 7e-07
Identities = 60/490 (12%), Positives = 145/490 (29%), Gaps = 81/490 (16%)
Query: 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364
+L+ +P A L ++ + PT + L L R AA
Sbjct: 6 ILEKTVSPDRLELEAAQKFLE---RAAVENLPTFLVELSRVLANPGNSQVARVAA----- 57
Query: 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424
++ L ++ + + ++ + ++
Sbjct: 58 ---------------GLQIKNSLTSKDPDIKAQYQ--------QRWLAIDANARREVKNY 94
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L + A++C A +++ ++P L+ + + K+S+++ +
Sbjct: 95 VLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154
Query: 1483 G-AMAYCAPQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIK-NPEIASL 1538
G P+QL +I+ + + + P V+ A AL K N + S
Sbjct: 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD------APSLALLV-PIVHRGLRERSAE 1591
++ + + + + V + + + I ++ E
Sbjct: 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIP---------------YIGLLLPEVKKVLVDPIPE-- 1634
+ + N+C + Y L + +L + +
Sbjct: 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334
Query: 1635 ---------VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
A + L ++ P ++ ++ + +K+ + R A +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCI 393
Query: 1686 LAALGTVYFEH----ILPDIIRNCSHQRASVRDGYL----TLFKYLPRSLGVQFQNYLQQ 1737
L + +P +I VRD + + LP + YL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--AINDVYLAP 451
Query: 1738 VLPAILDGLA 1747
+L +++GL+
Sbjct: 452 LLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 45/322 (13%)
Query: 1391 NSAKRREGALLAFECLCEKL-GRLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDT--------------------HPKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ A G + P + P + +P + +++ DP VR AA +G + +
Sbjct: 382 YRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKS 1668
E L+ L++ L +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-04
Identities = 55/354 (15%), Positives = 128/354 (36%), Gaps = 45/354 (12%)
Query: 1135 LFKALSHSN--YNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191
L +++ N +++ + EA+ + P+ +Q + + + I+ + + +
Sbjct: 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV-- 190
Query: 1192 LGRQGIALALHSAADVLRT-KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKH 1247
+ AL ++ + + D F+ + A + VR L + I+ +
Sbjct: 191 --KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248
Query: 1248 GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
+ + + P + A + ++ +G+ ++ V D+ +D
Sbjct: 249 YQYMETYMGPALFAITIE-AMKSDIDEVALQGIEFWS---------------NVCDEEMD 292
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE------RRGAAFG 1361
+ SEA ++ + + LV L L K D+ + + A
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQ 1420
L + + + ++E + + + R+ A++AF C+ E +P VIQ
Sbjct: 352 LMLLATCCEDDIVPH--VLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMS------QLSAQGVKLVLPSLLKGLE 1468
+P L+ D V VR+ A + ++ + +L L++GL
Sbjct: 409 AMPTLIELMKDPSVVVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 22/222 (9%), Positives = 75/222 (33%), Gaps = 14/222 (6%)
Query: 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLPKIVPKLTEVLT-DTHPKVQ 1516
+ + W+ + +++ ++L SQ ++ ++ D + +
Sbjct: 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78
Query: 1517 SAGQTALQQVGSVIKNPEIAS-----LVPTLLMGLTDPNDHTKYSLDILLQTTFVN---T 1568
+ +++ + +K P + + LL + ++ L T
Sbjct: 79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKK 1626
+ ++ + ++ ++ + + + Q+ + + ++P V +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198
Query: 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
++ D P +R++ + LI+ G F + L + +
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 18/177 (10%)
Query: 1620 LLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNV 1673
LL ++ D + ++AA+++ + + F + + LLD K +V
Sbjct: 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSV 120
Query: 1674 ERSGAAQGLSEVL----AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL----PR 1725
+ L + + E +L DI+ + H+ +R LF
Sbjct: 121 -IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ +V+P ++ + D ++R + + + +E
Sbjct: 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES---FAILIKIFGMNTFVKTLEH 233
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 8e-09
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 1343 LDQLMKSDKYGERRGA----AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ + S K+ +R A + K +S + + + +
Sbjct: 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80
Query: 1399 ALLAFECLCEKLGR--LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456
A + E +C+KL + YV + LL ++ +V EA A +
Sbjct: 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140
Query: 1457 KL----VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----QCLPKIVPKLTEVL 1508
+L +L+ ++ K + + QL A S ++VP + +++
Sbjct: 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 1509 TDTHPKVQSAGQTAL 1523
DT P +++ G +
Sbjct: 201 NDTQPAIRTIGFESF 215
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+++ D ++ A + I K+ + ++ L+ + +A
Sbjct: 68 IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKA 127
Query: 1909 LGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLS 1961
L + + ++ + +K + R + M +
Sbjct: 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187
Query: 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008
DE++P + + D+ +R +F+ L K GM + + L
Sbjct: 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 7e-11
Identities = 65/328 (19%), Positives = 111/328 (33%), Gaps = 28/328 (8%)
Query: 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR----R 1940
+M + +SS + + LG + G + I+
Sbjct: 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454
Query: 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF-KSAGMQ 1999
G +G+ G + + S E+ ++ L + E+A L + +
Sbjct: 455 HGASLGI-------GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507
Query: 2000 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL-PLSAFNAHALG 2058
AI ++ + T A+ GL I R I L L +
Sbjct: 508 AIHDMFTYSQETQHGNITRGLAV-GLALINYGRQELADDLITKMLASDESLLRYGGAFTI 566
Query: 2059 ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118
ALA AG G N + L A+ D + DV+ A A V L+ D V +V L
Sbjct: 567 ALAY-AGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFV-LLRDYTTVPRIVQLLS 621
Query: 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
K + A +R +A+ +G L + I L L D AA ALS
Sbjct: 622 K---SHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALS 672
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSRDK 2206
++ +++ P + ++ +S +K
Sbjct: 673 MILIQQTEKLNPQVADINKNFLSVITNK 700
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 54/232 (23%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + + + D VR AA L G + + L+K L+D+ ++++
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKDEDAWVRRAAA 71
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539
LG + + V L + L D V+ + AL Q+G V
Sbjct: 72 DALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAV 114
Query: 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKK 1594
L+ L D + + + A +L + V + + L++ ++
Sbjct: 115 EPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
AA +G + ++K+ R VA + +
Sbjct: 162 SAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 48/231 (20%)
Query: 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRG 1357
V+ + L S V+RA + L + DE L+ L D + RR
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRA 69
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
AA L + L + L D + R+ A +A LG++ +
Sbjct: 70 AADALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE- 111
Query: 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS
Sbjct: 112 --RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQS 162
Query: 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528
+ LG + ++ + ++ + L+ S
Sbjct: 163 AADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAA 70
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+ LG + + A + L++ D++G ++ LG+ + L D
Sbjct: 71 ADALGQIGDERA---VEPLIKALKDEDGWVR----QSAAVALGQIGDERAVEPLIKALKD 123
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
VR AA L EI + LI +L RQ A ALG
Sbjct: 124 EDWFVRIAAAFA-----------LGEIGDERAVEPLIKALKDEDGWVRQSAADALG---- 168
Query: 1915 KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
++G + + + + + R+ L
Sbjct: 169 EIGG---ERVRAAMEKLAETGTGFARKVAVNYLET 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
++ + ++ L DE+ VR AA A L + ++ L+ A++D ++ +RQS+
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADA---LGQIGDERAVEPLIKALKD----EDGWVRQSA 101
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
LG + + A L+ +D A LG + L D
Sbjct: 102 AVALGQIGDERAVEPLIKALK--DEDWFVRIAA-----AFALGEIGDERAVEPLIKALKD 154
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGEL 1912
VRQ+A L EI + + + + R+VA L
Sbjct: 155 EDGWVRQSAA-----------DALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 38/226 (16%)
Query: 1914 RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
R P + + + L+D S R+ L ++ + + + A
Sbjct: 10 AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKA 58
Query: 1974 LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSV 2031
L D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 59 LKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI--- 108
Query: 2032 RTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQ 2091
+ ++ L A AL E+ + L+ A+ D+D V+
Sbjct: 109 GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWVR 160
Query: 2092 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
A +A + E G E + + + K R+ + +
Sbjct: 161 QSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 199
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 45/193 (23%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 70
Query: 1558 DILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612
A +L + V + + L++ ++ AA +G +
Sbjct: 71 -------------ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113
Query: 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672
+ + K L D VR AA A+G + V L+ ALK ++
Sbjct: 114 --------VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGW 158
Query: 1673 VERSGAAQGLSEV 1685
V R AA L E+
Sbjct: 159 V-RQSAADALGEI 170
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 30/187 (16%)
Query: 1996 AGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 2053
A ++A E V + L+DD A L +I + ++ L +
Sbjct: 12 APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI---GDERAVEPLIKALKD-EDAWVR 67
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
A AL ++ + L+ A+ D+D V+ + AA + + DE VE L
Sbjct: 68 RAAADALGQIGDE-------RAVEPLIKALKDEDGWVR---QSAAVALGQIGDERAVEPL 117
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L D +R ++A+ +G + LI L D D +A
Sbjct: 118 IKAL----KDEDWFVRIAAAFALGEI----------GDERAVEPLIKALKDEDGWVRQSA 163
Query: 2174 WEALSRV 2180
+AL +
Sbjct: 164 ADALGEI 170
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 57/242 (23%)
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED 1469
+P + + + + D VR AA L G + + L+K L+D
Sbjct: 7 HHHHTDP---EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKD 56
Query: 1470 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529
+ ++++ LG + + V L + L D V+ + AL Q+G
Sbjct: 57 EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD- 105
Query: 1530 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRG 1584
V L+ L D + + + A +L + V + +
Sbjct: 106 ------ERAVEPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKA 146
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644
L++ ++ AA +G + ++K+ R VA +
Sbjct: 147 LKDEDGWVRQSAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLE 194
Query: 1645 SL 1646
+
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 48/231 (20%)
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRGAA 1359
V+ + L S V+RA + L + DE L+ L D + RR AA
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRAAA 66
Query: 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419
L + L + L D + R+ A +A LG++ +
Sbjct: 67 DALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE--- 106
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS+
Sbjct: 107 RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQSAA 159
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
LG + ++ + ++ + L+ S+I
Sbjct: 160 DALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 33/214 (15%)
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1796
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAAA 66
Query: 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856
+ LG + + A L+ +D ++ LG+ + L D
Sbjct: 67 DALGQIGDERAVEPLIKALK--DEDGWVR-----QSAAVALGQIGDERAVEPLIKALKDE 119
Query: 1857 SLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
VR AA L EI + LI +L RQ A ALGE
Sbjct: 120 DWFVRIAAA-----------FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE---- 164
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
+G + + + + + R+ L
Sbjct: 165 IGG---ERVRAAMEKLAETGTGFARKVAVNYLET 195
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 32/182 (17%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+ + K L D VR AA A+G + V L+ ALK ++ V R AA
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWV-RQSAAV 98
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
ALG + E + +I+ + VR +LG + + ++ +
Sbjct: 99 -------ALGQIGDERAVEPLIKALKDEDWFVRIAAA-------FALG-EIGD--ERAVE 141
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L DE+ VR +A A L E + E R+ +V L
Sbjct: 142 PLIKALKDEDGWVRQSAADA---LGEIGGERVRAAMEKLAET----GTGFARKVAVNYLE 194
Query: 1801 DL 1802
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 41/232 (17%)
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
+ H H + + + ++D D++ +R+++ LG + + A + L++
Sbjct: 1 MRGSHHHHHHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGDERAV---EPLIKA 53
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
D++ RA + LG+ + L D VRQ+A
Sbjct: 54 LKDEDAWVR----RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA-----------V 98
Query: 1878 TLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936
L +I + LI +L R A ALGE+ G+ + L + LKD
Sbjct: 99 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---ERAVEPLIKALKDED 151
Query: 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
RQ L E+ + + + R+ A
Sbjct: 152 GWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 38/227 (16%)
Query: 1913 VRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972
P + + + L+D S R+ L ++ + + +
Sbjct: 4 SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIK 52
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILS 2030
AL D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 53 ALKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI-- 103
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDV 2090
+ ++ L A AL E+ + L+ A+ D+D V
Sbjct: 104 -GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWV 154
Query: 2091 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
+ A +A + E G E + + + K R+ + +
Sbjct: 155 RQSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT-KYS 1556
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 65
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
D L D ++ L+ + L++ ++ AA +G +
Sbjct: 66 ADAL-----GQIGDERAVEPLI----KALKDEDGWVRQSAAVALGQIGDERA-------- 108
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676
+ + K L D VR AA A+G + V L+ ALK ++ V R
Sbjct: 109 ----VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGWV-RQ 156
Query: 1677 GAAQGLSEV 1685
AA L E+
Sbjct: 157 SAADALGEI 165
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 4e-08
Identities = 66/525 (12%), Positives = 173/525 (32%), Gaps = 58/525 (11%)
Query: 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALG 1690
E+ + AI + I + + + + L+ + + ++ + + +
Sbjct: 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312
Query: 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI-LDGLADE 1749
E+ ++ H + F + ++ + G
Sbjct: 313 VALGENHSRALLDQVEHWQ--------------------SFLALVNMIMFCTGIPGHYPV 352
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
NE+ L + L + +L + R +L+ LL K
Sbjct: 353 NETTSSLTLTFWYTLQDD--------ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFP 404
Query: 1810 SGKALLEGGSDDEGASTEAHGR------AIIEVLGRDKRNEVLA----ALYMVRSDVSLS 1859
S + SD++ + E+LG + + + L S
Sbjct: 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQ 464
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
+A L+ +++I +++P L+ LI ++ S+ + +G L L +
Sbjct: 465 HTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH 523
Query: 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
++ S++P++ L +P S + + + K L + ++ + L
Sbjct: 524 PVMINSVLPLVLHALGNPELSVSSVSTL---KKICRECKYDLPPYAANIVAVSQDVLMKQ 580
Query: 1978 I------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE---DDQTSDTALDGLKQI 2028
I + + ++ G S L ++ + ++ + LE ++ + + + I
Sbjct: 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI 640
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
L + + + + + ++ +LS +D
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700
Query: 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
V+++ ++V ++D+ +V +L + +G ++I ++SA
Sbjct: 701 VVEAVCAIFEKSVKTLLDD--FAPMVPQLCEMLGRMYSTIPQASA 743
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626
N D L+ + +V R L +A + +AAQ++G V ++ + +G L ++
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 1627 VLVDPIPEVRSVAARAIGSLIRG--MGEENFPDL--VSWLLDALKSDNSNVERSGAAQGL 1682
+ D VR A AI L+R G F L S L+ A++ + + +A L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL-KVKSAFLL 191
Query: 1683 SEVLA----ALGTVYFEHILPDIIRNCSHQRASVRD 1714
+L GT+ ++ ++ + + +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 7e-06
Identities = 57/382 (14%), Positives = 115/382 (30%), Gaps = 37/382 (9%)
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIV-ANTPKTLKEIMPVLMNTLISSLASSSSE 1900
+ E+ + SD A + + + + P I ++ L+ + + E
Sbjct: 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 145
Query: 1901 RRQV-AGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955
Q+ A AL + + V +P+ + L S ++ L V +
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 205
Query: 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS----AGMQAIDEIVPTLLHA 2011
+ + I + + +A S L + + + +PTL
Sbjct: 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265
Query: 2012 L--EDDQTSDTALDGLKQILSV----RTTAVLPHILPKLVHLPLSA---FNAHALGALAE 2062
+ D +T A + + + I +LV L AL A+
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325
Query: 2063 VAGPGLNFHLGTI----LPALLSAMGDDDMDVQSLAKEAAETV-----------TLVIDE 2107
+ I LPAL + +++ KEA T+ VID
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIK---KEACWTISNITAGNTEQIQAVIDA 382
Query: 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS 2167
+ LV L + + + + + + I L LL +D+
Sbjct: 383 NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN 442
Query: 2168 TTVAAAWEALSRVVASVPKEVQ 2189
+ +AL ++ + +
Sbjct: 443 RIIEVTLDALENILKMGEADKE 464
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 66/383 (17%), Positives = 143/383 (37%), Gaps = 32/383 (8%)
Query: 1293 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT-------LVSRLLDQ 1345
+ ++ + ++ LN+ Q + + ++ S + P +V RL++
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL-SREHRPPIDVVIQAGVVPRLVEF 138
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
+ ++ + AA+ L + G + + L + + + A+ A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ-AIWAL 197
Query: 1404 ECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---ARAMMSQLSAQGVK 1457
+ + YV+Q M P+L + S++ +R A R Q V
Sbjct: 198 GNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
LP+L K + T + + ++ + +I +L E+L+ VQ
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316
Query: 1517 SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTV 1569
+ A+ + V N A ++P L + L+ P ++ K + + T NT
Sbjct: 317 TPALRAVGNI--VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 1570 DAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVK 1625
++ A L+P + + L +TKK+A + N S + D+I Y+ + +
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR 1648
+L + V A+ ++++
Sbjct: 435 DLLEIADNRIIEVTLDALENILK 457
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 27/266 (10%)
Query: 1284 TGALAKHLAKDDPKV------HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
AL +A D ++ +L + N+ ++ R + LS L + + +
Sbjct: 194 IWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 1338 LVSR----LLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSLKKYGIAATLREGLADRN 1391
V L +L+ S A + ++ + G I ++ I L E L
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSHE 311
Query: 1392 SAKRREGALLAFECLC----EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447
S + AL A + + + V+ L LLL + + + +EA +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNIT 369
Query: 1448 MS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL----PKI 1500
Q+ A ++P L+K LE ++TK+ + + + Q+
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQV 1526
+ L ++L ++ AL+ +
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENI 455
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 65/464 (14%), Positives = 130/464 (28%), Gaps = 84/464 (18%)
Query: 1284 TGALAKHLAKDDPKVHAV-----VDKLLDVLNTPSEAVQRAVSSCLS------------- 1325
L L + AV + K++ +LN + + CL
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 1326 -------PLMQ--------SMQDEAPTLVSRL------------------LDQLMKSDKY 1352
L+ + ++ L L +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 1353 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC----E 1408
+ + L + G+ TL + L + A L +
Sbjct: 239 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYK 296
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPS 1462
+ + I+ L ++ D+ A +R ++++ V+L LP
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 1463 LLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
++K L W +++V L+ +A C +P+L ++L H Q
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 1522 ALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579
Q V ++ EI L L + H + + ++ L V
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVI-----------RGLNTIPLFVQ 464
Query: 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+ L ++ AA ++ + E + I G + ++L V + A
Sbjct: 465 L----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYA 518
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683
A + + ++ L L +L A GL
Sbjct: 519 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLD 562
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 64/180 (35%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
L + D VR + A+ MG+E F L+ ++L +++ + R AA
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSR----MGDEAFEPLL----ESLSNEDWRI-RGAAA- 63
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
++ ++ +
Sbjct: 64 ---WIIGNFQD--------------------------------------------ERAVE 76
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L D++ VR A + L + + E R+ +V L
Sbjct: 77 PLIKLLEDDSGFVRSGAARS---LEQIGGERVRAAMEKLAET----GTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 29/141 (20%)
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
+AD N RR+ A L R+ + LL + S++ +R AA
Sbjct: 17 RGSHMADENKWVRRD-VSTA-------LSRMGDEAF----EPLLESLSNEDWRIRGAA-- 62
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
A + + + L+K LED + + + + L + ++
Sbjct: 63 -AWI----IGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRA 107
Query: 1503 KLTEVLTDTHPKVQSAGQTAL 1523
+ ++ + L
Sbjct: 108 AMEKLAETGTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 25/130 (19%)
Query: 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
L +D+ VR + A LS G + LL+ L ++ WR + ++ +
Sbjct: 14 LVPRGSHMADENKWVRRDV---STA----LSRMGDEAF-EPLLESLSNEDWRIRGAAAWI 65
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
+G + V L ++L D V+S +L+Q+G +
Sbjct: 66 IGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAA 108
Query: 1542 LLMGLTDPND 1551
+
Sbjct: 109 MEKLAETGTG 118
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-05
Identities = 69/397 (17%), Positives = 143/397 (36%), Gaps = 40/397 (10%)
Query: 1285 GALAKHLAKDD----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT--- 1337
GA+ H A+ + + +++++ + S Q + + L+ S + P
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLL-SKEPNPPIDEV 59
Query: 1338 -----LVSRLLDQLMKSDKYGERRGAAFGLAGVVKG--FGISSLKKYGIAATLREGLADR 1390
+V+R ++ L + + + +A+ L + G + + G E L
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSS 118
Query: 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---- 1443
+E A+ A + + YV+ + PLL + + + A A
Sbjct: 119 EFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
Query: 1444 ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVP 1502
R V L L L + L ++ ++ + +
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-K 1554
+L E+L KV S AL+ VG+++ +I S + +LL L+ P + K
Sbjct: 238 RLVELLMHNDYKVVSP---ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 1555 YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT-EPK 1611
+ + T N + A + P + L+ T+K+AA + N S + E
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
+ +G + P + +L ++ VA + +++R
Sbjct: 355 KYLVELGCIKP-LCDLLTVMDSKIVQVALNGLENILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 29/303 (9%)
Query: 1483 GAMAYCAPQQLSQCLPK---IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL- 1538
GAM + Q + + I + E++ P+ Q + +++ S NP I +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 1539 -----VPTL--LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERS 1589
V + + S +L N++ + A VPI L
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ +++A +GN+ T +D + +L P ++ + A A+ +L RG
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-----------TVYFEHIL 1698
VS L+ L S + L++ AL V +
Sbjct: 181 KSPPPEFAKVSPCLNVL----SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-VLPAILDGLADENESVRDAA 1757
++ H V L + +Q Q L L ++L L+ ES++ A
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
Query: 1758 LGA 1760
Sbjct: 297 CWT 299
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 55/372 (14%), Positives = 108/372 (29%), Gaps = 35/372 (9%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQV-AGR 1907
M+ S A K + + E++ ++ + L + Q +
Sbjct: 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87
Query: 1908 ALGELVRKLGERVLP----SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963
L + + +PI L ++ L + + +
Sbjct: 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 1964 DELIPTIRTALC-DSILEVRESAGLAFSTLFKS----AGMQAIDEIVPTLLHALE--DDQ 2016
++P + + L + +A A S L + + + L L D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 2017 TSDTALDGLKQILSV---RTTAVLPH-ILPKLVHL---PLSAFNAHALGALAE-VAGPGL 2068
A L + + AV+ + +LV L + AL A+ V G +
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Query: 2069 NFHLGT---ILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 2117
+ L +LL + ++ ++ + VID +L+S L
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
+ + YLV+ I L LL+ DS V A L
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL--GCIKPLCDLLTVMDSKIVQVALNGL 385
Query: 2178 SRVVASVPKEVQ 2189
++ +E +
Sbjct: 386 ENILRLGEQEAK 397
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 6e-05
Identities = 56/458 (12%), Positives = 127/458 (27%), Gaps = 89/458 (19%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTK 1554
P I+ + +L + + G L+ + K + + L+ +
Sbjct: 60 TPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFN 119
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
+ + + A + + + + K ++ V +
Sbjct: 120 VQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLD----- 174
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKS 1668
++ L+ R A A ++ + L S + + L +
Sbjct: 175 -----FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVT 229
Query: 1669 DNSN----------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718
D N V R AA LS + +G I+ ++ V+ L
Sbjct: 230 DKFNDFVDDRTVAPV-RDAAAYLLSRIYPLIGP---NDIIEQLVGFLDSGDWQVQFSGLI 285
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
YL +F + ++ L+ +E ++ + L T SL L+L
Sbjct: 286 ALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL---LCHFPITDSLDLVLE 337
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
W + + + S ++ + ++
Sbjct: 338 KC--------W-------KNIESE-----------------ELISVSKTSNLSLLTKIYR 365
Query: 1839 RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS- 1893
+ E L ++ + VR + L +K + ++ L++
Sbjct: 366 ENPELSIPPERLKDIFPCFTSPVPEVRTSIL-----------NMVKNLSEESIDFLVAEV 414
Query: 1894 -LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930
L E R++A + L + +L + I
Sbjct: 415 VLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGS 452
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 6e-04
Identities = 39/250 (15%), Positives = 76/250 (30%), Gaps = 37/250 (14%)
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-----MQAIDEIVPT-LLH 2010
+L F +++ L R A LAF+ +F +D + + +
Sbjct: 170 ENVLDFFEQIS----DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYE 225
Query: 2011 ALEDDQTSDTALDGLKQILSVRTTA------VLPHILPKLVHLPLSAFNAH--------- 2055
L D+ +D D + VR A + P I P + L F
Sbjct: 226 ILVTDKFNDFVDDRT--VAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSG 283
Query: 2056 --ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
ALG L E + L+S + D D++ L+ E + + V
Sbjct: 284 LIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEK 338
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ ++ S S+ L+ Y+ + + P + + + +
Sbjct: 339 CWKNIESEELISVSK-TSNLSLLTKIYRENPELSIP--PERLKDIFPCFTSPVPEVRTSI 395
Query: 2174 WEALSRVVAS 2183
+ +
Sbjct: 396 LNMVKNLSEE 405
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 65/462 (14%), Positives = 138/462 (29%), Gaps = 82/462 (17%)
Query: 1284 TGALAKHLAKDDPK------VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
L +L + + K++ +LN + + CL L Q+
Sbjct: 255 ITTLH-NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313
Query: 1338 LVS----RLLDQLMKSDKYGERRGAAFGL----------------AGVVK---------- 1367
+++ + L +M++ Y + + AG ++
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 373
Query: 1368 -------GFGISSLKKYGIAATLREG-------LADRNSAKRREGALLAFECLC----EK 1409
+ + +L EG L + A L +
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPSL 1463
+ + I+ L ++ D+ A +R ++++ V+L LP +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493
Query: 1464 LKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQ 1520
+K L W +++V L+ +A C +P+L ++L H Q ++
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580
QQ ++ EI L L + H + + ++ L V +
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVI-----------RGLNTIPLFVQL 601
Query: 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++ AA ++ + E + I G + ++L V + AA
Sbjct: 602 ----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYAA 655
Query: 1641 RAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
+ + ++ L L +L GL
Sbjct: 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 56/420 (13%), Positives = 134/420 (31%), Gaps = 59/420 (14%)
Query: 1824 ASTEAHGRAIIEVLGRDKRNEVLAA------LYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
A + + L + + LA ++ + + V +AA+ V + +
Sbjct: 125 AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR 184
Query: 1878 TLKEIMPVLMNTLISSLASSSSE--RRQVAGRALGEL---------VRKLGERVLPSIIP 1926
P +++ ++ ++ +++ R +G L L + K G IP
Sbjct: 185 HAIMRSPQMVSAIVRTMQNTNDVETARCTSG-TLHNLSHHREGLLAIFKSG------GIP 237
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
L L P S L ++ +++ + + + L + ++
Sbjct: 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 297
Query: 1987 LAFSTL--FKSAGMQAIDE--IVPTLLHALEDDQTSD------TALDGLKQILSVRTTAV 2036
L I L++ + L L S + V
Sbjct: 298 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 357
Query: 2037 LPHILPKLVHLPLSAFN----AHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQ 2091
+ L L+ + + L L ++ + +L L+ +G DD++V
Sbjct: 358 EAGGMQALGLH-LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV 416
Query: 2092 --------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG---YFY 2140
+L + +V G+E+LV +L+ ++ I + + +
Sbjct: 417 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR--AGDREDITEPAICALRHLTSRH 474
Query: 2141 KNSKLYLVDEAPNM-ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199
+++++ + + ++ LL + A L R +A + P+ +R+
Sbjct: 475 QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-----LCPANHAPLREQ 529
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 6e-04
Identities = 63/370 (17%), Positives = 120/370 (32%), Gaps = 45/370 (12%)
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897
G R + + + + + + + ++ + S+
Sbjct: 10 GLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSN 69
Query: 1898 SSERRQVAGRALGELVRKLGERVLPSI-----IPILSRGLKDPSASRRQGVCIGLSEVMA 1952
+ E + A +A +L+ + + + +I IP L S Q +A
Sbjct: 70 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 129
Query: 1953 SAGKSQLLSFMDEL-IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
S Q + +D IP + L + E A A + A D A
Sbjct: 130 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI-------AGDG------SA 176
Query: 2012 LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFH 2071
D A+D L +L+V + L + + LS + A A
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ---- 232
Query: 2072 LGTILPALLSAMGDDDMDVQS--------LAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
ILP L+ + +D +V + L E + +V+ + V LV +LL G
Sbjct: 233 ---ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV-KLL---GA 285
Query: 2124 NQASIRRSSAYLIGYFYKNS---KLYLVDEAPNMISTLIVLLSDSDSTTVA-AAWEALSR 2179
+ I + IG + ++D ++ LL++ + A W +S
Sbjct: 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATW-TMSN 342
Query: 2180 VVASVPKEVQ 2189
+ A ++Q
Sbjct: 343 ITAGRQDQIQ 352
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 8e-04
Identities = 63/386 (16%), Positives = 139/386 (36%), Gaps = 37/386 (9%)
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT------LVSRLLDQLM 1347
+ V+ V+ ++ +N+ + Q + L+ + L+ + + L
Sbjct: 51 NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 110
Query: 1348 KSDKYGERRGAAFGLAGVVKG---FGISSLKKYGIAATLREGLADRNSAKRREGALLAFE 1404
K+D + +A+ L + G + + I A + L A E A+ A
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS--LLASPHAHISEQAVWALG 168
Query: 1405 CLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECAARAMMSQLS--------A 1453
+ G F VI+ + PLL + + + +S L
Sbjct: 169 NIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTH 1512
V+ +LP+L++ L S + + +++ + +VP+L ++L T
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 1513 PKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-KYSLDILLQTT 1564
+ + AL+ +G+++ + A + LT+P + K + + T
Sbjct: 288 LPIVTP---ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
Query: 1565 FVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
+ LVP + L + +T+K+AA + N S T + + ++
Sbjct: 345 AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 404
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIR 1648
+ +L ++ V AI ++ +
Sbjct: 405 PLMNLLSAKDTKIIQVILDAISNIFQ 430
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2256 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.89 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.87 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.87 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.86 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.83 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.8 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.78 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.76 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.75 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.75 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.75 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.75 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.73 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.73 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.71 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.7 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.65 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.64 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.64 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.62 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.61 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.61 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.61 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.61 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.59 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 99.58 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.57 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.57 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.55 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.55 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.55 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.55 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.53 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.53 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.51 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.51 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.44 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.43 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.4 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.4 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.39 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.39 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.37 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.3 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.3 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.25 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.2 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.2 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.19 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.17 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.13 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 99.04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.03 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.95 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.95 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.92 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.91 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.91 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.88 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.87 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.85 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.85 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.84 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.83 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.83 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.79 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.75 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.73 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.66 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.61 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.56 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.56 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.53 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.53 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.52 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.5 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.49 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.43 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.33 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.25 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.23 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.18 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.15 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.04 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 97.92 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.85 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.81 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.71 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.62 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.57 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.49 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.41 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.41 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 97.19 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.14 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.83 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.75 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.66 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 96.13 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 95.84 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 95.26 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 94.93 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 94.07 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 93.9 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 92.43 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 90.05 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 89.89 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 89.53 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 89.35 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 88.49 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 87.05 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=512.62 Aligned_cols=934 Identities=16% Similarity=0.194 Sum_probs=690.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-----PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~ 1207 (2256)
..+++.+.+++..+|..|...|....... ++....++..|.+.. .+++|++|.+++.++..++..
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L----------~d~~~~vR~~A~~~L~~l~~~ 78 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL----------EDKNGEVQNLAVKCLGPLVSK 78 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT----------TCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHh
Confidence 67888899999999999988887765432 234556666666641 246799999999999999887
Q ss_pred hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccc---------cccchHHHHHHHhhccCCChhhhhhhhh
Q 000098 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD---------NVSLLFPIFENYLNKKASDEEKYDLVRE 1278 (2256)
Q Consensus 1208 ~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~---------~~~~Ll~~l~~~L~~~~~~~~~~~~vr~ 1278 (2256)
.++...+.+++.+ ..++.|.++.||.++..+...++...+.. .++.++|.+.+.+.+ .+ +..+|.
T Consensus 79 ~~~~~~~~i~~~L-l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~----~~~~~~ 152 (1230)
T 1u6g_C 79 VKEYQVETIVDTL-CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QE----DVSVQL 152 (1230)
T ss_dssp SCHHHHHHHHHHH-HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CS----CHHHHH
T ss_pred CCHHHHHHHHHHH-HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CC----chHHHH
Confidence 7665567778877 46899999999999999999888877765 588999998888763 11 126889
Q ss_pred HHHHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHH
Q 000098 1279 GVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRG 1357 (2256)
Q Consensus 1279 ~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~ 1357 (2256)
.++..++.+++..+.. .|+++.+++.++..+.+++ ..+|..
T Consensus 153 ~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~--------------------------------------~~vR~~ 194 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR--------------------------------------LAVRKR 194 (1230)
T ss_dssp HHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSS--------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCc--------------------------------------HHHHHH
Confidence 9999999998765432 3444444444444444333 455666
Q ss_pred HHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHH
Q 000098 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437 (2256)
Q Consensus 1358 Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR 1437 (2256)
|+.+|+.++...+...+. .+++.+.+.+.+..++..|..++.+++.++...|+.|.||+..++|.++..+.|+++.||
T Consensus 195 a~~al~~l~~~~~~~~~~--~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 195 TIIALGHLVMSCGNIVFV--DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHHHHTTTC----CT--THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHHHHhcCHHHHH--HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 666666666555443332 456666666654434567778889999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHh---hHHhHHHHHHHhcc-------------------------------------CCChhHHHH
Q 000098 1438 EAAECAARAMMSQLSAQ---GVKLVLPSLLKGLE-------------------------------------DKAWRTKQS 1477 (2256)
Q Consensus 1438 ~aa~~al~~l~~~l~~~---~v~~ilp~Ll~~L~-------------------------------------~~~w~~R~~ 1477 (2256)
+.+.+++..++..++.. .++.++|.+++.+. +..|++|.+
T Consensus 273 ~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~ 352 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA 352 (1230)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence 99999999998876643 34667777765542 125899999
Q ss_pred HHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc----------------------hhH
Q 000098 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----------------------PEI 1535 (2256)
Q Consensus 1478 a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~----------------------~~i 1535 (2256)
|+.+++.++...++.+..+++.++|.+...+.|.++.||.++..++..+....+. +.+
T Consensus 353 A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (1230)
T 1u6g_C 353 AAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV 432 (1230)
T ss_dssp HHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh
Confidence 9999999999888778889999999999999999999999999999998876532 234
Q ss_pred HhHHHHHHhhhCCCChhHHH-HHHHHHhc-ccccCCChhhHhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHhhhcCCCC
Q 000098 1536 ASLVPTLLMGLTDPNDHTKY-SLDILLQT-TFVNTVDAPSLALLVPIVHRGLRERSA--ETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr~-al~~L~~~-~~~~~~~~~~l~~i~p~L~~~L~d~~~--~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
..++|.+.+.+.+++..+|. ++..+... ......-.+.+..++|.+...+.+.++ .+|..++..++.+.... .+.
T Consensus 433 ~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~-~~~ 511 (1230)
T 1u6g_C 433 PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH-SPQ 511 (1230)
T ss_dssp THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS-CGG
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC-CHH
Confidence 66777777779999888874 44444431 111222246788999999999998764 88999898888887642 445
Q ss_pred cchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc-------C---chHHHHHHHHHHhh-cCCCHHHHHHHHH
Q 000098 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-------E---NFPDLVSWLLDALK-SDNSNVERSGAAQ 1680 (2256)
Q Consensus 1612 ~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~-------~---~~~~lip~Ll~~L~-~~~~~~~R~~aa~ 1680 (2256)
.+.+|++.++|.+...+.|+++.+|..+..+++.+++.+|+ . |++.++|.++..+. .+.+..+|..++.
T Consensus 512 ~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~ 591 (1230)
T 1u6g_C 512 VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAIS 591 (1230)
T ss_dssp GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 68899999999999999999999999999999999999887 2 56788999988885 3466779999999
Q ss_pred HHHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhC-hhHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000098 1681 GLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENESVRDA 1756 (2256)
Q Consensus 1681 ~L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g-~~f~~yl~~ilp~Ll~~L~d~~~~VR~~ 1756 (2256)
+++.++...|.. ++..+++.+...+.+. ..|..++.+++.++...+ .++.+|++.++|.+...+.+++..+|..
T Consensus 592 ~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~ 669 (1230)
T 1u6g_C 592 CMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLG 669 (1230)
T ss_dssp HHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999998876 5677777777776644 478888999998886543 3678999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccch-hchHHHH---HhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHH
Q 000098 1757 ALGAGHVLVEHYATTSL-PLLLPAV---EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRA 1832 (2256)
Q Consensus 1757 Al~al~~iv~~~~~~~~-~~llp~L---~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~ 1832 (2256)
++.++..++..++.... +.+.|.+ ...+.+++|.++..+.+.+..++...++ . .
T Consensus 670 a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~----~----------~-------- 727 (1230)
T 1u6g_C 670 TLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS----S----------L-------- 727 (1230)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGG----G----------G--------
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCch----h----------H--------
Confidence 99999999988764322 2233333 3345678899999999988887522100 0 0
Q ss_pred HHHHhcchhhHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHHHHHHHHhcC---CCHHHHHHH
Q 000098 1833 IIEVLGRDKRNEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSLAS---SSSERRQVA 1905 (2256)
Q Consensus 1833 l~~~Lg~e~~~~vl~~L~~~~~D~--~~~Vr~aA~~~l~~l~~~~~--~~l~~~l~~Ll~~L~~~L~~---~~~~~R~~A 1905 (2256)
....+.+++.++....+. ......+....++.++.+.+ ..+.++++.++..+.. .+ .....+..+
T Consensus 728 ------~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~~ 799 (1230)
T 1u6g_C 728 ------SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS--QSTALTHKQSYYSI 799 (1230)
T ss_dssp ------GGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT--C----CCHHHHHHH
T ss_pred ------HHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccC--CCCccccchhhHHH
Confidence 001223344444433222 23334455566777766543 2455555555433210 01 244568889
Q ss_pred HHHHHHHHHhhCccchhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHH
Q 000098 1906 GRALGELVRKLGERVLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRE 1983 (2256)
Q Consensus 1906 ~~aL~~lv~~~~~~~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~ 1983 (2256)
+++++.++...|+... .+++.+...+.++ +...+..+|.+++++....+ +.+ .+++.+.+..++.|++++||.
T Consensus 800 a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~---~~~-~~~l~~~~~~~l~~~~~~Vr~ 874 (1230)
T 1u6g_C 800 AKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID---LSG-QLELKSVILEAFSSPSEEVKS 874 (1230)
T ss_dssp HHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC---CCS-CTHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHhcchhhH-HHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC---Ccc-cccHHHHHHHHhCCCCHHHHH
Confidence 9999999998877543 4445455555542 45567777788887754322 112 255788899999999999999
Q ss_pred HHHHHHHHHHHHhchhhHHhHHHHHHHhhccCC-chHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHH
Q 000098 1984 SAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ-TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAE 2062 (2256)
Q Consensus 1984 ~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~-~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~ 2062 (2256)
+|+.++|.+.. ...+.++|.+++.+.++. .....+.++++++..
T Consensus 875 aAa~aLg~l~~----~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~------------------------------- 919 (1230)
T 1u6g_C 875 AASYALGSISV----GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS------------------------------- 919 (1230)
T ss_dssp HHHHHHHHHHH----HTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHS-------------------------------
T ss_pred HHHHHhHHHhc----cCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhc-------------------------------
Confidence 99999999874 346678999999987642 233445555555421
Q ss_pred HhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh
Q 000098 2063 VAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2256)
Q Consensus 2063 ~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~ 2142 (2256)
..+..+.+|...|++.|++.+.+.++.+|..+.+|++.++...+ ..++|.+.+.+.++++.+|..++.+++.++..
T Consensus 920 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~----~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~ 995 (1230)
T 1u6g_C 920 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP----ETLLPRLKGYLISGSSYARSSVVTAVKFTISD 995 (1230)
T ss_dssp SCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG----GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCS
T ss_pred CChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 12456788899999999999988888999999999999998643 46888999999999999999999999999888
Q ss_pred chhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC---CchhchHHHHHHH
Q 000098 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK---EVQPSYIKVIRDA 2199 (2256)
Q Consensus 2143 ~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~---e~l~~lv~~l~~~ 2199 (2256)
.+..+.+|++.+++.++..++|++.+||++|+.+|+.+++..|. ++++.++|.+.+.
T Consensus 996 ~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~ 1055 (1230)
T 1u6g_C 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNE 1055 (1230)
T ss_dssp SCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHT
T ss_pred CchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999999987764 3455555555544
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=480.43 Aligned_cols=1045 Identities=14% Similarity=0.130 Sum_probs=743.4
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCC--CchhhhhhhhhhhccCCcHHHHHHHHHHHhhcCCCCC----
Q 000098 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSL--PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFG---- 1129 (2256)
Q Consensus 1056 ~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~~~~~---- 1129 (2256)
+.++..||.++.|||+.+|..|++.|.+......... .....+...++....|.+..+|..|...-..+.....
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4578999999999999999999999987652210111 1123456677777778999999887765544332222
Q ss_pred CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHH
Q 000098 1130 TDY-SGLFKALSHSNYNVRLAAAEALATALDEYPD----------SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2256)
Q Consensus 1130 ~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~----------~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2256)
+.+ ..+++.+.+++..+|.+++++++.++...+. .++.++..|.+... ..+.|.+|.++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~---------~~~~~~~~~~al 155 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA---------KQEDVSVQLEAL 155 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS---------CCSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc---------CCCchHHHHHHH
Confidence 223 5667777888899999999999999877553 37788888877641 125689999999
Q ss_pred HHHHHhhhhhccC---ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhh
Q 000098 1199 LALHSAADVLRTK---DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1199 ~aL~~l~~~~~~~---~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
.+|..++..++.. ..+.++..++ ..+.|+++.||..++.++..++...+.+.++.+++.+.+.|... .+ ..
T Consensus 156 ~~l~~~~~~~~~~l~~~~~~ll~~l~-~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~-~~----~~ 229 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNFHPSILTCLL-PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN-DS----MS 229 (1230)
T ss_dssp HHHHHHHHHTCSSCTTTHHHHHHHHG-GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT-CS----SC
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-Cc----hh
Confidence 9999998766543 3456777764 68899999999999999999888777777788888888887652 11 25
Q ss_pred hhhHHHHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC--CH
Q 000098 1276 VREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KY 1352 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~--~~ 1352 (2256)
+|..++.+++.++...++. .|++..+++.++..+.++++.+|+.+..++..++...++.+..+++.++..+...- +.
T Consensus 230 ~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~ 309 (1230)
T 1u6g_C 230 TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDP 309 (1230)
T ss_dssp SCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCC
Confidence 7888999999999876542 46778899999999999999999999999999988887776667777666665321 11
Q ss_pred HHHHHHHHHH-HHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCC
Q 000098 1353 GERRGAAFGL-AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2256)
Q Consensus 1353 ~vR~~Aa~~L-~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D 1431 (2256)
.......... ..+-...+.+... +..... ...++..|.+|+.|..++..++...++.|.+|+..++|.+...++|
T Consensus 310 ~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~--~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 310 NYNYDDEDEDENAMDADGGDDDDQ--GSDDEY--SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE 385 (1230)
T ss_dssp ---------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC
T ss_pred CCCCcccccccccccccccccchh--hccccc--ccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC
Confidence 1110000000 0000000000000 000000 0122346899999999999999877778999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHhhhhH------------------hhH----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1432 QVVAVREAAECAARAMMSQLSA------------------QGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1432 ~~~~VR~aa~~al~~l~~~l~~------------------~~v----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
.+..||.++..++..++...+. ..+ +.++|.+.+.+.+.+|++|.+++.+++.++...
T Consensus 386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999888775431 122 455666666699999999999999999999998
Q ss_pred hhhHhhhhhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhhhCCCChhHH-HHHHHHHh
Q 000098 1490 PQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTK-YSLDILLQ 1562 (2256)
Q Consensus 1490 p~~l~~~L~~Ivp~L~~~L~D~~~--~VR~aA~~aL~~l~~~i~~~----~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~ 1562 (2256)
+..+..+++.++|.+...+.|+++ .||..++.++..+.+..+.. +++.++|.++..+.|++..++ .++..+..
T Consensus 466 ~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~ 545 (1230)
T 1u6g_C 466 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQ 545 (1230)
T ss_dssp TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 888888999999999999999875 89999999999998766543 568899999999999887775 45555443
Q ss_pred c-cc-c------cCCChhhHhhHHHHHHHhh--cCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCC
Q 000098 1563 T-TF-V------NTVDAPSLALLVPIVHRGL--RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 1632 (2256)
Q Consensus 1563 ~-~~-~------~~~~~~~l~~i~p~L~~~L--~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~ 1632 (2256)
. .. . .....+....++|.+...+ .+.++.+|..+..+++.++...+ ..+.++++.+++.+...+.+.
T Consensus 546 l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g--~~~~~~~~~~l~~L~~~l~~e- 622 (1230)
T 1u6g_C 546 LVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG--DNLGSDLPNTLQIFLERLKNE- 622 (1230)
T ss_dssp HHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG--GGCCTHHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--chhhhhHHHHHHHHHHHhccc-
Confidence 1 11 1 1133467888999999988 67889999999999999998654 345678899999998888754
Q ss_pred HHHHHHHHHHHHHHHHhhCc----CchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHh
Q 000098 1633 PEVRSVAARAIGSLIRGMGE----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRN 1704 (2256)
Q Consensus 1633 ~~VR~~a~~aL~~L~~~~g~----~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~ 1704 (2256)
..|..+.++++.++...+. .+.+.++|.+...+.+ .+...|..++.+++.++...+.. .+.+++..+...
T Consensus 623 -~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~l 700 (1230)
T 1u6g_C 623 -ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK-NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 700 (1230)
T ss_dssp -SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGG
T ss_pred -hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhh
Confidence 4788899999998865432 2567788888887775 56779999999999999988743 344444444455
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc-----cchhchHHH
Q 000098 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-----TSLPLLLPA 1779 (2256)
Q Consensus 1705 l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~-----~~~~~llp~ 1779 (2256)
+.+.+..++..++.++..+....+..+.++.+.++|.++..+.++. ++..+..++..+.+.+.. ..+..+++.
T Consensus 701 l~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~ 778 (1230)
T 1u6g_C 701 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRM 778 (1230)
T ss_dssp SCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 6678899999999999999988887777788889999998887653 122233333333333322 234556666
Q ss_pred HHhhcCC-----CCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1780 VEDGIFN-----DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1780 L~~~l~d-----~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
+.+.+.. ..+..+..+.+.+|.+......... .++..+.....
T Consensus 779 l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~--------------------------------~~~~~~~~~~~ 826 (1230)
T 1u6g_C 779 LTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP--------------------------------AVVGQFIQDVK 826 (1230)
T ss_dssp HSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH--------------------------------HHHTTTTTTTT
T ss_pred HhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH--------------------------------HHHHHHHHHhC
Confidence 6544321 3566777778888887633111000 00111111111
Q ss_pred C--CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhc
Q 000098 1855 D--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2256)
Q Consensus 1855 D--~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l 1932 (2256)
+ ....++..++.+++.+....+ +.+ .|.+.+.+++.+.++++.+|..|+.+||.++.. .++.++|.+.+.+
T Consensus 827 ~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~----~~~~~lp~ll~~l 899 (1230)
T 1u6g_C 827 NSRSTDSIRLLALLSLGEVGHHID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG----NLPEYLPFVLQEI 899 (1230)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH----THHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcccCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc----CHHHHHHHHHHHH
Confidence 1 233445555555555433211 111 255677778888999999999999999999853 3455677777766
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhh
Q 000098 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL 2012 (2256)
Q Consensus 1933 ~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L 2012 (2256)
.+. +..|...+.++.+++...+.+.+.+|.+.+.+.+...+.+.+..+|..+++++|.+..... +.++|.+.+.+
T Consensus 900 ~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~----~~l~p~l~~~l 974 (1230)
T 1u6g_C 900 TSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP----ETLLPRLKGYL 974 (1230)
T ss_dssp HSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG----GGTHHHHTTTS
T ss_pred hcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh----HHHHHHHHHHh
Confidence 543 6778889999999998887778889999999999998888888999999999999987532 45778877777
Q ss_pred ccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHH
Q 000098 2013 EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQS 2092 (2256)
Q Consensus 2013 ~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~ 2092 (2256)
.++.... .. ....++..+....+..+.+|++.+++.++..+++++.++|.
T Consensus 975 ~~~~~~~---R~---------------------------~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~ 1024 (1230)
T 1u6g_C 975 ISGSSYA---RS---------------------------SVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRR 1024 (1230)
T ss_dssp SSSCHHH---HH---------------------------HHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHH
T ss_pred cCCCHHH---HH---------------------------HHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 6543210 00 01111222222234556678888999999999999999999
Q ss_pred HHHHHHHHHHhhcch---hcHHHHHHHHHhhcCCC------------------ChhhHHHHHHHHHHHHHhchhhhhhhH
Q 000098 2093 LAKEAAETVTLVIDE---EGVESLVSELLKGVGDN------------------QASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2256)
Q Consensus 2093 ~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~~~------------------~~~vR~~A~~~l~~l~~~~~~~~~~y~ 2151 (2256)
.+..++..++...+. +++..++|.|...+.-. .-.+|.+|+.+++.+.......+. +
T Consensus 1025 ~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~--~ 1102 (1230)
T 1u6g_C 1025 VALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD--I 1102 (1230)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC--H
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCC--H
Confidence 999999999986543 57888999988776432 237999999999999987544432 4
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC---CchhchHHHHHHHHhhh
Q 000098 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK---EVQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2152 ~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~---e~l~~lv~~l~~~l~~~ 2203 (2256)
..++..++..+.| +.+++.-+...+.+++...|. ..++.++.++++.|...
T Consensus 1103 ~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1156 (1230)
T 1u6g_C 1103 FEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTK 1156 (1230)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCC
T ss_pred HHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667778888888 489999999999999988876 56788899988877654
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=415.33 Aligned_cols=742 Identities=13% Similarity=0.150 Sum_probs=566.3
Q ss_pred HhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh---
Q 000098 1133 SGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2256)
Q Consensus 1133 ~~ll~~l-~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~--- 1207 (2256)
..++... .+++..+|+.|.+.|..+.+. .|+.+..+++.+.+ .+.+.++|..++..|++....
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~------------~~~~~~vR~~A~~~lk~~i~~~w~ 74 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID------------ENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC------------TTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC------------CCCChHHHHHHHHHHHhhccCcCh
Confidence 4566666 788999999999999886654 24444433333321 123567899999999987531
Q ss_pred -------------hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHhhccCCChhhh
Q 000098 1208 -------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKY 1273 (2256)
Q Consensus 1208 -------------~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~~~~ 1273 (2256)
++.+....+.+.++ +++.+.++.||..+..+...+....++ ..|+.++|.+.+.+.+. . +
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~----~ 148 (861)
T 2bpt_A 75 VKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-Q----P 148 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-S----C
T ss_pred HHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-C----C
Confidence 33333445666664 578999999999999998888877655 47999999998887541 1 2
Q ss_pred hhhhhHHHHHHHHHHhhhccC----CcchHHHHHHHHHHcCCC--CHHHHHHHHHhhHHhHHhhcCc-----hHHHHHHH
Q 000098 1274 DLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRL 1342 (2256)
Q Consensus 1274 ~~vr~~av~~L~~La~~l~~~----~~~i~~il~~Ll~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~-----~~~~l~~L 1342 (2256)
..+|+.++.+++.+++.+... .+....+++.+...+.++ +..||..+.+|+..++..++.. ...++-..
T Consensus 149 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~ 228 (861)
T 2bpt_A 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Confidence 368999999999999876543 356788889999999988 8999999999998876544221 11223333
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchh-h-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---------
Q 000098 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK-Y-GIAATLREGLADRNSAKRREGALLAFECLCEKLG--------- 1411 (2256)
Q Consensus 1343 l~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~-~-~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--------- 1411 (2256)
+..+..++++.+|..+..+|..++...+...... . .+++.+...+.+. +..+|..++.++..+++...
T Consensus 229 l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T 2bpt_A 229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3445567789999999999999998876322111 1 4666666666665 78999999999999887631
Q ss_pred --------cCchHhHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHH
Q 000098 1412 --------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2256)
Q Consensus 1412 --------~~~~pyv~~llp~ll~~l~D-------~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~ 1476 (2256)
..+.+++..++|.++..+.+ ++..+|.++..+++.++..++...+..++|.+.+.+.+.+|+.|.
T Consensus 308 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 387 (861)
T 2bpt_A 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHH
Confidence 23467788999999988874 345899999999999999888777788999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH
Q 000098 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~ 1555 (2256)
+++.++|.+++++. +.+..+++.++|.+...+.|+++.||.++++++++++..++...
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--------------------- 446 (861)
T 2bpt_A 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI--------------------- 446 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS---------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc---------------------
Confidence 99999999998874 77888899999999999999999999999999999997654210
Q ss_pred HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC--CCcchhhhhhhhHHHHHhhc--CC
Q 000098 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLV--DP 1631 (2256)
Q Consensus 1556 al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~--~~~l~~~l~~Ll~~L~~~L~--d~ 1631 (2256)
...+.+..++|.+.+.+.+. +.+|..++.++.++++.+++ +..+.+|++.+++.+...+. |.
T Consensus 447 -------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~ 512 (861)
T 2bpt_A 447 -------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN 512 (861)
T ss_dssp -------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC
T ss_pred -------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCc
Confidence 00112334556666666665 78899999999999886542 35678999999999999998 44
Q ss_pred CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcC--------------CCHHHHHHHHHHHHHHHHHhcHh--
Q 000098 1632 IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV-- 1692 (2256)
Q Consensus 1632 ~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~--------------~~~~~R~~aa~~L~~i~~~~g~~-- 1692 (2256)
++.+|..+..+++.++...|++ +++.++|.+++.+.+. ....+|..++.+++.++..+|..
T Consensus 513 ~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5899999999999999998865 4567788888777632 12346778888999999998874
Q ss_pred -HHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1693 -YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1693 -~l~~ll~~ll~~l~~~~~-~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
+.+.+++.++..+++.++ .+|+.++.+++.++...|.+|.+|++.++|.++..+.++++.+|..+..++..++...+.
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch
Confidence 667888888888888777 899999999999999999999999999999999999888888998888887777665543
Q ss_pred cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHH
Q 000098 1771 TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2256)
Q Consensus 1771 ~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~ 1850 (2256)
. +.|.+ +.+++.++
T Consensus 673 ~----~~~~~--------------------------------------------------------------~~l~~~l~ 686 (861)
T 2bpt_A 673 D----FRRYS--------------------------------------------------------------DAMMNVLA 686 (861)
T ss_dssp G----GHHHH--------------------------------------------------------------HHHHHHHH
T ss_pred h----ccchH--------------------------------------------------------------HHHHHHHH
Confidence 2 11111 11222222
Q ss_pred HHhcCC--cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHhhC
Q 000098 1851 MVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRKLG 1917 (2256)
Q Consensus 1851 ~~~~D~--~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-----------~~~R~~A~~aL~~lv~~~~ 1917 (2256)
..+.+. +..+|..++.+++.++...+..+.++++.+++.+...+.... ..+|..+..+++.++..++
T Consensus 687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 233332 256889999999999988888899999999999988876431 4578999999999999887
Q ss_pred c------cchhchHHHHhhhcCCC----ChhhHHhHHHHHHHHHHhhChhhhHhhHh-hHHHHHHHHhc---CCCHHHHH
Q 000098 1918 E------RVLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEVRE 1983 (2256)
Q Consensus 1918 ~------~~l~~llp~L~~~l~d~----~~~vR~~a~~aL~eii~~~~~~~l~~~l~-~li~~l~~~L~---D~~~~VR~ 1983 (2256)
. .+++.+++.+...+.|. +..+|..++.+++.++..+++..+.+|++ .+++.+.+.+. +.+..+++
T Consensus 767 ~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 846 (861)
T 2bpt_A 767 DKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKD 846 (861)
T ss_dssp TCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHH
Confidence 3 25567777777776663 78899999999999999884445778888 88998888765 56778999
Q ss_pred HHHHHHHHHHH
Q 000098 1984 SAGLAFSTLFK 1994 (2256)
Q Consensus 1984 ~A~~al~~l~~ 1994 (2256)
.|.-+.+.+.+
T Consensus 847 ~~~wa~~~~~~ 857 (861)
T 2bpt_A 847 TARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887764
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=422.34 Aligned_cols=746 Identities=15% Similarity=0.157 Sum_probs=549.7
Q ss_pred ChHHHHHHHhhh-cCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHHH-------------
Q 000098 1055 QPNEVASALHGV-YTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDI------------- 1120 (2256)
Q Consensus 1055 ~~~~~~~ll~~~-~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~------------- 1120 (2256)
+++++.++|.++ +|||+++|+.|++.|++.... +.|.....+..++ ...+.+.++|.+|...
T Consensus 2 d~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~~~~~l~~il-~~~~~~~~vR~~A~~~lk~~i~~~w~~~~ 77 (861)
T 2bpt_A 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSND---NFLQFAGLSSQVL-IDENTKLEGRILAALTLKNELVSKDSVKT 77 (861)
T ss_dssp CHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred CHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHH-hCCCCChHHHHHHHHHHHhhccCcChHHH
Confidence 457889999999 999999999999999875311 1122222222222 2223477788876554
Q ss_pred ------Hhh-cCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CC-CcHHHHHHHHHHHHHhhcCCCCCCCCC-
Q 000098 1121 ------WDR-YGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLYIRDIGLGGDNVDA- 1189 (2256)
Q Consensus 1121 ------w~~-~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~-~~~~~~l~~L~~~~~~~~~~~~~~~~~- 1189 (2256)
|.. ++.+.+..+ ..+++.+.+++..+|..++++++.++.. +| +.|++++..|.+.. .++
T Consensus 78 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l----------~~~~ 147 (861)
T 2bpt_A 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNT----------GAEQ 147 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHT----------STTS
T ss_pred HHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHH----------hcCC
Confidence 443 443444445 7788889999999999999999999865 67 48999999998863 123
Q ss_pred CcchhHHHHHHHHHhhhhhccC------ChhHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhccc-----cccchH
Q 000098 1190 GWLGRQGIALALHSAADVLRTK------DLPVIMTFLISRALADT--NADVRGRMLNAGIMIIDKHGRD-----NVSLLF 1256 (2256)
Q Consensus 1190 ~~~~R~~~~~aL~~l~~~~~~~------~~~~l~~~lv~~~l~D~--~~~VR~~a~~a~~~~i~~~g~~-----~~~~Ll 1256 (2256)
++..|.++..++..++..+..+ ..+.+++.+ ..++.|. ++.||..++++...++...+.. .+..++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l-~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAI-VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHH-HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHH
Confidence 5789999999999998765443 234566665 3678887 8999999999987765322211 124566
Q ss_pred HHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccC-CcchH-HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh---
Q 000098 1257 PIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM--- 1331 (2256)
Q Consensus 1257 ~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~-~~~i~-~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~--- 1331 (2256)
+.+...+.+ .+..+|..++.+++.++...+.. .+++. .+++.++..+.++++.++..+.+++..++...
T Consensus 227 ~~l~~~~~~------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 300 (861)
T 2bpt_A 227 QVVCEATQA------EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300 (861)
T ss_dssp HHHHHHHTC------SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 766665533 12368999999999998765432 34556 77777888899999999998888877766542
Q ss_pred ------------------cCchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHH
Q 000098 1332 ------------------QDEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 1387 (2256)
Q Consensus 1332 ------------------~~~~~~~l~~Ll~~L~~------~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l 1387 (2256)
......+++.++..+.. +++|.+|+.++.+|+.++...|...+. .+++.+.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~--~l~~~l~~~l 378 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE--PVLEFVEQNI 378 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHT
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH--HHHHHHHHHc
Confidence 11124566777777764 235899999999999999998855543 6888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-----hhHHhHHH
Q 000098 1388 ADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----QGVKLVLP 1461 (2256)
Q Consensus 1388 ~~~~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-----~~v~~ilp 1461 (2256)
.+. +|..|++++.+++.++++.+ +.+.+|+..++|.++..+.|+++.||.++.++++.++..++. ..+..++|
T Consensus 379 ~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~ 457 (861)
T 2bpt_A 379 TAD-NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp TCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred CCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 765 89999999999999998775 667899999999999999999999999999999999887654 24688999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhCh----hhHhhhhhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhcCch--
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQTALQQVGSVIKNP-- 1533 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p----~~l~~~L~~Ivp~L~~~L~--D~~~~VR~aA~~aL~~l~~~i~~~-- 1533 (2256)
.+++.+.++ +++|..++.+++.++..++ ..+.++++.+++.+...+. |.++.||..++.+++.++...+..
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~ 536 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence 999999876 9999999999999998754 5677899999999999997 455899999999999999887642
Q ss_pred -hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC-CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000098 1534 -EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1534 -~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~-~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
++..++|.+++.+.+. .. .... ...+ -.+....+|..++.+++.++..++ .
T Consensus 537 ~~~~~l~~~l~~~l~~~-----------~~--~~~~i~~~~------------~~~~~~~~~~~~~~~l~~l~~~~~--~ 589 (861)
T 2bpt_A 537 ETSASISTFVMDKLGQT-----------MS--VDENQLTLE------------DAQSLQELQSNILTVLAAVIRKSP--S 589 (861)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TT--SCGGGCCHH------------HHHHHHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHHHH-----------Hh--hhcccCChh------------hHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 3445555554433210 00 0000 0000 001123567788889999988654 3
Q ss_pred cchhhhhhhhHHHHHhhcCCCH-HHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1612 DMIPYIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1612 ~l~~~l~~Ll~~L~~~L~d~~~-~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~ 1687 (2256)
.+.||++.+++.+...+.+.++ .+|+.+..+++.++...|++ |++.++|.+++.+.+ .++.+|..++..++.++.
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISN 668 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHH
Confidence 6789999999999999998888 99999999999999998876 567899999999964 556689999999999999
Q ss_pred HhcHh---HHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCC-----------H
Q 000098 1688 ALGTV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-----------E 1751 (2256)
Q Consensus 1688 ~~g~~---~l~~ll~~ll~~l~~~~--~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~-----------~ 1751 (2256)
.+|.. ++..+++.++..+.+++ +.+|..++.+++.++...|+.|.+|++.++|.++..+.... .
T Consensus 669 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~ 748 (861)
T 2bpt_A 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQI 748 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHH
T ss_pred HhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 98865 56788888888887764 89999999999999999999999999999999999887421 2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHH
Q 000098 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2256)
Q Consensus 1752 ~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~ 1831 (2256)
.+|.++++++..++..++.. | .
T Consensus 749 ~vr~~~l~~~~~i~~~l~~~------~----------------------------------------------------~ 770 (861)
T 2bpt_A 749 KVLEAVLDAYVGIVAGLHDK------P----------------------------------------------------E 770 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTTC------H----------------------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHccC------H----------------------------------------------------H
Confidence 34444444444444333210 0 0
Q ss_pred HHHHHhcchhhHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcC-hhHHHHHHH-HHHHHHHHHhc---CCCHHHH
Q 000098 1832 AIIEVLGRDKRNEVLAALYMVRSDV----SLSVRQAALHVWKTIVANT-PKTLKEIMP-VLMNTLISSLA---SSSSERR 1902 (2256)
Q Consensus 1832 ~l~~~Lg~e~~~~vl~~L~~~~~D~----~~~Vr~aA~~~l~~l~~~~-~~~l~~~l~-~Ll~~L~~~L~---~~~~~~R 1902 (2256)
.+ ..+...++..+.....|. +..+|.+|+.+++.++... +..+.++++ .+++.+++.+. +.+..++
T Consensus 771 ~~-----~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 845 (861)
T 2bpt_A 771 AL-----FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATK 845 (861)
T ss_dssp HH-----GGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHH
Confidence 00 001122333333344443 6789999999999999877 667777777 77777776665 4667889
Q ss_pred HHHHHHHHHHHHhh
Q 000098 1903 QVAGRALGELVRKL 1916 (2256)
Q Consensus 1903 ~~A~~aL~~lv~~~ 1916 (2256)
..|.++++.+.+.+
T Consensus 846 ~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 846 DTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=406.25 Aligned_cols=723 Identities=15% Similarity=0.177 Sum_probs=550.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhh----
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVL---- 1208 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~---- 1208 (2256)
..+++...+++..+|+.|.+.|..+ +..|+.+..+...+... .+.+..+|..++..|++.....
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~~~-----------~~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKL-----------KSEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTC-----------TTSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHhcc-----------CCCChHHHHHHHHHHHHHHHHccCCC
Confidence 3445555588999999999999754 44555444333333211 1245689999999999887532
Q ss_pred ccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHH
Q 000098 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La 1288 (2256)
+.+....+.+.++ ++++|+++.||..+..+...+....+.+.|+++++.+.+.+.+. +..+|+.++..++.++
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHH
Confidence 1122344555554 68999999999999999999988777889999999999987652 2268999999999999
Q ss_pred hhhccC------CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhc----CchHHHHHHHHHHHhcCCCHHHHHHH
Q 000098 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ----DEAPTLVSRLLDQLMKSDKYGERRGA 1358 (2256)
Q Consensus 1289 ~~l~~~------~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~----~~~~~~l~~Ll~~L~~~~~~~vR~~A 1358 (2256)
+..+.. ...+..+++.++..+.+++..||..+..|+..++.... .....+++.++..+ .+++..+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~-~d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA-GDEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc-CCCCHHHHHHH
Confidence 876432 12367789999999999999999999999887764432 22356666666644 45679999999
Q ss_pred HHHHHHHHhhhCcccchh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hccCchHhHHHHHHHHHHHc-----
Q 000098 1359 AFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF----- 1429 (2256)
Q Consensus 1359 a~~L~~lv~~~g~~~~~~--~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~--l~~~~~pyv~~llp~ll~~l----- 1429 (2256)
+.+|..++...+.. +.. ..+++.+.+.+.+. ++.+|..++.++..+++. ..+.+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 236 CRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp HHHHHHHHHHCHHH-HGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHhCHHH-HHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHh
Confidence 99999999866422 111 15777777777765 788999999988888763 22346789999999999887
Q ss_pred ------CC-----------CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1430 ------SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1430 ------~D-----------~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
+| .+..||.++..+++.++...+...++.++|.+.+.+.+.+|+.|.+|+.++|.+++++++.
T Consensus 314 d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 314 DIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 44 2346899999999999998887667889999999999999999999999999999999988
Q ss_pred HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChh
Q 000098 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 1572 (2256)
Q Consensus 1493 l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 1572 (2256)
+..+++.++|.+...++|+++.||.+|+++++++++.++... ..+
T Consensus 394 ~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~ 438 (852)
T 4fdd_A 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-----------------------------------PDT 438 (852)
T ss_dssp HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-----------------------------------TTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-----------------------------------HHH
Confidence 888999999999999999999999999999999987643210 011
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
.+..+++.+.+.+.+.++.+|..++.+++++++..+ ..+.||++.+++.+...+.+........+..+++.++...|+
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~--~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh--HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhh
Confidence 233466667777777788999999999999998543 458899999999999999988888888899999999988875
Q ss_pred C-----chHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhcc----------------
Q 000098 1653 E-----NFPDLVSWLLDALKS--DNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS---------------- 1706 (2256)
Q Consensus 1653 ~-----~~~~lip~Ll~~L~~--~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~---------------- 1706 (2256)
. |++.++|.+++.+.. +.+...+ .+..+++.++..+|.. ++..+++.++..+.
T Consensus 517 ~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 3 677788888754322 2233344 6788899999998875 44555554444322
Q ss_pred -CCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc---chhchHHHH
Q 000098 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2256)
Q Consensus 1707 -~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~---~~~~llp~L 1780 (2256)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++..+.|+++.||..+..+++.++..++.. .++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23667899999999999999999999998 789999999999999999999999999998877754 345688999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCC--cH
Q 000098 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV--SL 1858 (2256)
Q Consensus 1781 ~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~--~~ 1858 (2256)
.+.+.++.+.+|..++..+|.+...... .+ ..+...++..|...+.++ ..
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~---------------------------~~-~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGI---------------------------EM-QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGG---------------------------GG-GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhH---------------------------hH-HHHHHHHHHHHHHHhCCCCCCc
Confidence 9999888899999999999998633210 00 112245666666665544 56
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhCccchhchHHHHh--hhcCCC
Q 000098 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILS--RGLKDP 1935 (2256)
Q Consensus 1859 ~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~--~~l~d~ 1935 (2256)
.+++.++.+++.++...|..+.++++.+++.+...+.. .+.+.|..+.++|..++..-+...++.+..... ..+.++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 79999999999999999988889999999999988864 566679999999999999866655555443222 223444
Q ss_pred ChhhHHhH
Q 000098 1936 SASRRQGV 1943 (2256)
Q Consensus 1936 ~~~vR~~a 1943 (2256)
.++.+...
T Consensus 808 ~~~l~~~~ 815 (852)
T 4fdd_A 808 KDDLRDMF 815 (852)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 45444433
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=415.74 Aligned_cols=687 Identities=14% Similarity=0.152 Sum_probs=531.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCCCC
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~~~ 1128 (2256)
+++.++|++++|||+++|++|+++|++... -|....++..+.....+.+..+|.+|.. .|...+.+.
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~ 87 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH
Confidence 467889999999999999999999997641 1333334555554336778899988775 454444344
Q ss_pred CCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhh
Q 000098 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2256)
Q Consensus 1129 ~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~ 1206 (2256)
+..+ ..+++.+.+++..+|..++++++.++.. +|+.|+++++.|.+.. .++++.+|.++..+|..++.
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----------~~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL----------DSEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----------SCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHH
Confidence 4445 7788889999999999999999999865 5678888888887763 13457899999999999887
Q ss_pred hhccC----C----hhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc---ccccchHHHHHHHhhccCCChhhhhh
Q 000098 1207 VLRTK----D----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1207 ~~~~~----~----~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~---~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
..+.. . .+.++..+ .+++.|.++.||..++.+...++...+. ..+..+++.+...+.+ .+..
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l-~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d------~~~~ 230 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKF-LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGD------EEPE 230 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHH-TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTC------CCHH
T ss_pred HhHHHhchhhhcchHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCC------CCHH
Confidence 65432 2 34556655 3688999999999999998877654332 2234556666555443 1236
Q ss_pred hhhHHHHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHh------hcCchHHHHHHHHHHHh-
Q 000098 1276 VREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------MQDEAPTLVSRLLDQLM- 1347 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~------~~~~~~~~l~~Ll~~L~- 1347 (2256)
+|..++.+|+.+++..+.. .|++..+++.++..+.++++.||..+.+++..+... ..+....+++.++..+.
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999764332 467788999999999999999999888887776532 23345667777777662
Q ss_pred ---------cC-----------CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000098 1348 ---------KS-----------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407 (2256)
Q Consensus 1348 ---------~~-----------~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~ 1407 (2256)
.+ .+|.+|+.|+.+|+.++...|...+. .+++.+.+.+.+. +|..|++++.+++.++
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~--~l~~~l~~~l~~~-~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIA 387 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 22 35778999999999999998865443 6889998888876 8999999999999999
Q ss_pred HHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh----hHHhHHHHHHHhccCCChhHHHHHHHHHH
Q 000098 1408 EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1483 (2256)
Q Consensus 1408 ~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~----~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg 1483 (2256)
++.++.+.+|+..++|.++..++|+++.||.++.++++.++..+++. ....+++.+++.+.+.++++|..|+.+|+
T Consensus 388 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~ 467 (852)
T 4fdd_A 388 EGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFA 467 (852)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99887788999999999999999999999999999999998876542 35788999999999999999999999999
Q ss_pred HHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHH---hhhCCCChhHHH
Q 000098 1484 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLL---MGLTDPNDHTKY 1555 (2256)
Q Consensus 1484 ~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~Ll---~~l~d~~~~vr~ 1555 (2256)
.+++.++..+.++++.+++.+...+++.+......+..+++.++...++ ++++.++|.++ ..+.|++...+.
T Consensus 468 ~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~ 547 (852)
T 4fdd_A 468 TLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 547 (852)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHH
T ss_pred HHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 9999988888999999999999999888777777788888888866553 35678888877 455666655554
Q ss_pred HHHHHHhc-ccccCCChhhHhhHHHHHHHhhc-----------------CCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1556 SLDILLQT-TFVNTVDAPSLALLVPIVHRGLR-----------------ERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1556 al~~L~~~-~~~~~~~~~~l~~i~p~L~~~L~-----------------d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+++.+... ........+..+.+++.+...+. ..+.+.+..+...++.++..++ ..+.+|+
T Consensus 548 ~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~--~~~~~~~ 625 (852)
T 4fdd_A 548 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQLV 625 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG--GGGHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh--HhHHHHh
Confidence 44443321 11111112344444443332221 2245788888999999998664 4678887
Q ss_pred --hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1618 --GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1618 --~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
+.+++.+...+.|+.+.+|..+..+++.++..+|.+ |++.++|.+.+.+.. ....+|..++.+++.++..+|.+
T Consensus 626 ~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~-~~~~v~~~a~~alg~i~~~~~~~ 704 (852)
T 4fdd_A 626 ARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP-EFISVCNNATWAIGEISIQMGIE 704 (852)
T ss_dssp HTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT-TSHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHhhHh
Confidence 789999999999999999999999999999988865 667899999988854 56778999999999999998865
Q ss_pred ---HHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Q 000098 1693 ---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1693 ---~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d-~~~~VR~~Al~al~~iv~ 1766 (2256)
+...+++.++..++++ ...+++.++.++|.++...+..+.||++++++.++..+.+ .+...|+.+.+++..++.
T Consensus 705 ~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 705 MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 6678888888888775 5689999999999999997666779999999999998864 445578999999999988
Q ss_pred Hhhcc
Q 000098 1767 HYATT 1771 (2256)
Q Consensus 1767 ~~~~~ 1771 (2256)
.....
T Consensus 785 ~~p~~ 789 (852)
T 4fdd_A 785 VNPSG 789 (852)
T ss_dssp HCGGG
T ss_pred hChHh
Confidence 76653
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=397.10 Aligned_cols=741 Identities=15% Similarity=0.167 Sum_probs=543.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh----
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~---- 1207 (2256)
.++|..+.+++..+|+.|.+.|..+... .|+.+..+++.+.+ .+.+..+|..++..|++....
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~------------~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN------------PGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhC------------CCCCHHHHHHHHHHHHHhccccchH
Confidence 4567777788999999999999776543 23333333333321 113457899999999986531
Q ss_pred -----------hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHhhccCCChhhhhh
Q 000098 1208 -----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1208 -----------~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
+..+....+.+.++ +++.+.++.+ ..+..+...+....++ +.|+.++|.+...+.+. + .+..
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll-~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~-~---~~~~ 145 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVL-HTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-N---STEH 145 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT-T---CCHH
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHH-HHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCC-C---CCHH
Confidence 11112233444453 5788888888 7788887777766554 78999999999988752 1 0236
Q ss_pred hhhHHHHHHHHHHhhhccC--CcchHHHHHHHHHHcCCC--CHHHHHHHHHhhHHhHHhhcCch-----HH-HHHHHHHH
Q 000098 1276 VREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLDQ 1345 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~--~~~i~~il~~Ll~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~~-----~~-~l~~Ll~~ 1345 (2256)
+|..++..++.+++.+.+. .+.+..+++.+...+.++ ++.+|..+.+|+..++..++... .. +++.+..
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~- 224 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE- 224 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 8999999999999865321 345778888888889887 68999999999988776543221 12 3443333
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCcccchh-h-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc------------
Q 000098 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKK-Y-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------------ 1411 (2256)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~-~-~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~------------ 1411 (2256)
+..++++.+|..+..+|..++...+...... . .+++.+.+.+.+. +..+|..++..+..+++...
T Consensus 225 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 4456678999999999999998765322111 1 5777777766655 78899999999988887531
Q ss_pred ---------cCchHhHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHH
Q 000098 1412 ---------RLFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 1475 (2256)
Q Consensus 1412 ---------~~~~pyv~~llp~ll~~l~-------D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R 1475 (2256)
....+++..++|.++..+. |.+..+|.++..+++.++..++...+..++|.+.+.+.+.+|++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHH
Confidence 1224567788999888875 345689999999999999988866678899999999999999999
Q ss_pred HHHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH
Q 000098 1476 QSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1476 ~~a~~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr 1554 (2256)
.+++.++|.++.+.+ +.+..+++.++|.++..++|+++.||.+|+++++++++.++...
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------------------- 443 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA-------------------- 443 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT--------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc--------------------
Confidence 999999999998876 66778899999999999999999999999999999998764310
Q ss_pred HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC------------CCCcchhhhhhhhH
Q 000098 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT------------EPKDMIPYIGLLLP 1622 (2256)
Q Consensus 1555 ~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~------------~~~~l~~~l~~Ll~ 1622 (2256)
...+.+..+++.+.+.+.+. +.+|..++.++++++...+ ....+.||++.++|
T Consensus 444 --------------~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~ 508 (876)
T 1qgr_A 444 --------------INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp --------------SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHH
Confidence 00112334455555555553 6777788888888876543 12457899999999
Q ss_pred HHHHhhcCC---CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhc----------CCC----HHHHHHHHHHH
Q 000098 1623 EVKKVLVDP---IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----------DNS----NVERSGAAQGL 1682 (2256)
Q Consensus 1623 ~L~~~L~d~---~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~----------~~~----~~~R~~aa~~L 1682 (2256)
.+...+.+. .+.+|..+..+++.++...|.+ +...++|.+++.+.. +.+ ...|..++.++
T Consensus 509 ~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 588 (876)
T 1qgr_A 509 KLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588 (876)
T ss_dssp HHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Confidence 999999865 4689999999999999999876 345677777776653 111 23467778889
Q ss_pred HHHHHHhc-Hh---HHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC-CHHHHH
Q 000098 1683 SEVLAALG-TV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRD 1755 (2256)
Q Consensus 1683 ~~i~~~~g-~~---~l~~ll~~ll~~l~~~~--~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~-~~~VR~ 1755 (2256)
+.++..+| .. ++..++|.++..+.+.. +.+|+.++.+++.++...|..|.+|++.++|.+...+.+. ++.+|.
T Consensus 589 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~ 668 (876)
T 1qgr_A 589 QNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp HHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99998888 43 56788888888887764 5799999999999999999999999999999999999887 788999
Q ss_pred HHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHH
Q 000098 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2256)
Q Consensus 1756 ~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~ 1835 (2256)
.+..++..++...+.. +.|.+
T Consensus 669 ~a~~~l~~l~~~~~~~----~~~~~------------------------------------------------------- 689 (876)
T 1qgr_A 669 AAVGLVGDLCRALQSN----IIPFC------------------------------------------------------- 689 (876)
T ss_dssp HHHHHHHHHHHHHGGG----GHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHh----hhhhH-------------------------------------------------------
Confidence 9888888887765532 11111
Q ss_pred HhcchhhHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCC-----------HHHH
Q 000098 1836 VLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERR 1902 (2256)
Q Consensus 1836 ~Lg~e~~~~vl~~L~~~~~D--~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-----------~~~R 1902 (2256)
+.++..+...+.+ .+..+|..++.+++.++...+..+.+++|.+++.+...+.... ..+|
T Consensus 690 -------~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 690 -------DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp -------HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 0111112222221 2344777888888888877777788899999998888776442 2788
Q ss_pred HHHHHHHHHHHHhhCc---------c----chhchHHHHhhhcCCC--ChhhHHhHHHHHHHHHHhhChhhhHhh-HhhH
Q 000098 1903 QVAGRALGELVRKLGE---------R----VLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSF-MDEL 1966 (2256)
Q Consensus 1903 ~~A~~aL~~lv~~~~~---------~----~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~-l~~l 1966 (2256)
..+..+++.++..++. . +++.+++.+.....++ +..+|..++.+++.++...|...+.+| .+.+
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 842 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM 842 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHH
Confidence 8999999999887653 1 3455666555555666 678999999999999999887456677 4677
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Q 000098 1967 IPTIRT-ALCDSILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1967 i~~l~~-~L~D~~~~VR~~A~~al~~l~~ 1994 (2256)
++.+.. ++.|+++++|.+|+.+++.+.+
T Consensus 843 i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 843 IHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 887777 8999999999999999999875
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=380.63 Aligned_cols=685 Identities=17% Similarity=0.166 Sum_probs=525.3
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-hhHHhHHHHHHHhccCC--ChhHHHHHHHHHHHHHhhC-hhh
Q 000098 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCA-PQQ 1492 (2256)
Q Consensus 1417 yv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~-~~v~~ilp~Ll~~L~~~--~w~~R~~a~~~Lg~la~~~-p~~ 1492 (2256)
....+.+.++..+.++++.+ ..+..++..++....+ ..++.++|.+.+.+.+. ++.+|.+++.+++.+++.. ++.
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 34456667778888888778 8888899988876543 55788999999999988 9999999999999999875 666
Q ss_pred HhhhhhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCC
Q 000098 1493 LSQCLPKIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2256)
Q Consensus 1493 l~~~L~~Ivp~L~~~L~D~--~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~ 1570 (2256)
+..+++.+++.+..++.|+ ++.||..|.+++..+...++.. +. ...
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~-------------~~~------------------ 213 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FD-------------KES------------------ 213 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HT-------------SHH------------------
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH-------------hHH------------------
Confidence 7788899999999999987 6899999999999887643211 10 000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh-hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~-~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
....+++.+...+.+.++++|..++.+++.++.. .++.+.+|+. .+++.+...+.+.++.+|..++..+..+++.
T Consensus 214 --~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 214 --ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp --HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 0012455556666677789999999999999874 3456788888 9999999999999999999999999988865
Q ss_pred hC------------------c--C----chHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHH
Q 000098 1650 MG------------------E--E----NFPDLVSWLLDALKS------DNSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2256)
Q Consensus 1650 ~g------------------~--~----~~~~lip~Ll~~L~~------~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~ 1699 (2256)
.. . . +...++|.+++.+.. +.++.+|..++.+++.++..+|...++.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 369 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 369 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH
Confidence 20 0 1 235788888888863 2356789999999999999999777888999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhHhhhC-hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc-----cch
Q 000098 1700 DIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-----TSL 1773 (2256)
Q Consensus 1700 ~ll~~l~~~~~~vR~~al~~l~~La~~~g-~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~-----~~~ 1773 (2256)
.+...+.+++|.+|.+++.+++.++...+ ..+.+|++.++|.++..+.|+++.||..|+.++..+...++. ..+
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 99999999999999999999999998887 567889999999999999999999999999999999887654 345
Q ss_pred hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHh
Q 000098 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2256)
Q Consensus 1774 ~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~ 1853 (2256)
+.++|.+...+.+. .++|..++.+++.+......... ..+++.....+ .+ ..+.+.+++.|....
T Consensus 450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~-----~~~~~~~~~~~--------~l-~~~~~~il~~L~~~l 514 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAAD-----VADDQEEPATY--------CL-SSSFELIVQKLLETT 514 (876)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTS-----CTTSCCCCCCC--------SS-TTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccc-----cccccccccch--------hh-hHhHHHHHHHHHHHH
Confidence 67889999888775 89999999999988743210000 00000000000 00 113345667776665
Q ss_pred cCC---cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-----------CC----HHHHHHHHHHHHHHHHh
Q 000098 1854 SDV---SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-----------SS----SERRQVAGRALGELVRK 1915 (2256)
Q Consensus 1854 ~D~---~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-----------~~----~~~R~~A~~aL~~lv~~ 1915 (2256)
.+. ...+|..++.+++.++...+....++++.+++.++..+.+ .+ +++|..+..+++.++..
T Consensus 515 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~ 594 (876)
T 1qgr_A 515 DRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594 (876)
T ss_dssp TSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3568999999999999887766666777777766655542 12 45678899999999998
Q ss_pred hC-cc---chhchHHHHhhhcCCCC--hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCC-CHHHHHHHHHH
Q 000098 1916 LG-ER---VLPSIIPILSRGLKDPS--ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLA 1988 (2256)
Q Consensus 1916 ~~-~~---~l~~llp~L~~~l~d~~--~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~-~~~VR~~A~~a 1988 (2256)
+| .. +++.++|.+.+.+.+.. +.+|..++.+++.++...+. .+.+|++.+++.+...+.+. ++++|..|..+
T Consensus 595 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG-EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp SCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred hChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 88 43 67888999988887653 46888999999999887664 46789999999999999887 89999999999
Q ss_pred HHHHHHHhchh---hHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhC
Q 000098 1989 FSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065 (2256)
Q Consensus 1989 l~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g 2065 (2256)
++.+....|.. +++++++.+++.|.+++.. .........+++.++...|
T Consensus 674 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~----------------------------~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 674 VGDLCRALQSNIIPFCDEVMQLLLENLGNENVH----------------------------RSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSC----------------------------GGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhCCcccc----------------------------HHhhHHHHHHHHHHHHHhc
Confidence 99999887753 3456666666666542110 0011235677888888889
Q ss_pred CCccccHhhHHHHHHHhhCCCC-----------HHHHHHHHHHHHHHHhhcch-------------hcHHHHHHHHHhhc
Q 000098 2066 PGLNFHLGTILPALLSAMGDDD-----------MDVQSLAKEAAETVTLVIDE-------------EGVESLVSELLKGV 2121 (2256)
Q Consensus 2066 ~~l~~~l~~Ilp~Ll~~l~~~~-----------~~vr~~a~~al~~l~~~~~~-------------~~~~~ll~~Ll~~l 2121 (2256)
+.+.+|++.++|.+.+.+..+. ..+|..+..++..++...+. ++++.+++.+....
T Consensus 726 ~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 805 (876)
T 1qgr_A 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999886442 26888899999988876532 34566666665555
Q ss_pred CCC--ChhhHHHHHHHHHHHHHhchh-hhhhh-HHHHHHHHHH-HcCCCChHHHHHHHHHHHHhhc
Q 000098 2122 GDN--QASIRRSSAYLIGYFYKNSKL-YLVDE-APNMISTLIV-LLSDSDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2122 ~~~--~~~vR~~A~~~l~~l~~~~~~-~~~~y-~~~il~~L~~-~l~D~d~~Vr~~A~~aL~~l~~ 2182 (2256)
.++ +..+|..|+.++|.++...+. .+.+| ...++++++. .++|+++.||.+|.+|++.+.+
T Consensus 806 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 676 689999999999999998887 88888 6788999999 9999999999999999999875
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=378.88 Aligned_cols=566 Identities=19% Similarity=0.220 Sum_probs=454.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py 1417 (2256)
.+..++..+.+ +++.+|..|+..++.++...|+... ...+++.+.+.. + +++.+|..+..+++.+....+. ..|
T Consensus 11 ~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~-~~~l~~~L~~~~-d-~~~~vr~~~~~~L~~~~~~~~~--~~~ 84 (588)
T 1b3u_A 11 PIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERT-RSELLPFLTDTI-Y-DEDEVLLALAEQLGTFTTLVGG--PEY 84 (588)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHH-HHTHHHHHHHTC-C-CCHHHHHHHHHHHTTCSGGGTS--GGG
T ss_pred cHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHH-HHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHHhccCc--HHH
Confidence 46667777754 4589999999999999887776433 236888887765 3 3788888887777766555443 346
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.+...+++|..|..++.+++.++...+.. .
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~ 161 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H
Confidence 677888888888999999999999999999998887665 456777777777888999999999999998877654 3
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhh
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
.+.++|.+..+++|+++.||..|+.+|+.+++.++.+.. ...
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~~ 203 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KSE 203 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HHH
Confidence 468899999999999999999999999999987764321 122
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-ch
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF 1655 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~-~~ 1655 (2256)
++|.+...+.|.++.+|..|+..++.++..++. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++ +.
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 445555555666677888888888888775321 2345668888888899999999999999999999888765 34
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1656 ~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
+.++|.+.+.+.+ +++.+|..++.+++.++..+|.+ +.+.++|.+...++++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 6788888888775 67779999999999999988764 56788999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 000098 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~ 1809 (2256)
. +.+.++|.+...+.|+++.||..++.++..+...++... .+.++|.+.+.+.|.+|++|..+++.++.+..
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~----- 431 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG----- 431 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-----
Confidence 4 467789999999999999999999999999888766443 35689999999999999999999999988752
Q ss_pred CccccccCCCCCCCcchHHHHHHHHHHhcchhh-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 000098 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2256)
Q Consensus 1810 ~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~-~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~ 1888 (2256)
.+|.+.+ +.+++.+...+.|.+..||..|+..++.++...+.. .+++.+++
T Consensus 432 --------------------------~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 432 --------------------------QLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp --------------------------HHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred --------------------------HcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 2232222 346667777788999999999999999998765543 24566666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHH
Q 000098 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2256)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li 1967 (2256)
.+...+.++++.+|..++.+++.++..+|.. +.+.++|.+.+.+.|+++++|..++.+++.+....|.... .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 6767778899999999999999999988765 6789999999999999999999999999999988876532 25688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1968 PTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1968 ~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
|.+...+.|++++||..|..+++.+.
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 88888889999999999999988753
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=358.86 Aligned_cols=556 Identities=16% Similarity=0.198 Sum_probs=453.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHH
Q 000098 1223 RALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301 (2256)
Q Consensus 1223 ~~l~D~~~~VR~~a~~a~~~~i~~~g~~-~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~i 1301 (2256)
..+.++++.+|..+..+...+....|++ .++.++|.+...+ + .++.+|..+...++.++.+++.. .+...+
T Consensus 17 ~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-----d--~~~~vr~~~~~~L~~~~~~~~~~-~~~~~l 88 (588)
T 1b3u_A 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-----Y--DEDEVLLALAEQLGTFTTLVGGP-EYVHCL 88 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-----C--CCHHHHHHHHHHHTTCSGGGTSG-GGGGGG
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-----C--CcHHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 5788999999999998887777666643 4677888886653 1 12368898999998888776432 235556
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il 1380 (2256)
++.+...+.++++.||..+..+|..+.....+ .....+..++..+.+++++..|..|+..++.++...+.... ..++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~--~~l~ 166 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK--AELR 166 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH--HHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 77777777889999999999999988876543 23444556666777777899999999999999887764332 3688
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-HhH
Q 000098 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLV 1459 (2256)
Q Consensus 1381 ~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-~~i 1459 (2256)
+.+.+.+.++ ++.+|..++.+++.+++..+. +.+...++|.+...++|+++.||..|..+++.++..++++.. +.+
T Consensus 167 ~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 167 QYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888887766 899999999999999988774 456778999999999999999999999999999988876554 678
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-----h
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----E 1534 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----~ 1534 (2256)
+|.+...+.|++|++|..++.+||.++...+... ..+.++|.+..+++|+++.||..|+.+++.+++.++.. .
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 8999899999999999999999999998764432 34678999999999999999999999999999988653 4
Q ss_pred HHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCC-ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1535 IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTV-DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~-~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
...++|.+...+.|++..+|. +...+.... ... .......++|.+...++|.++++|..++..++.++..++.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~--~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--- 396 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLS--PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--- 396 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH--HHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---
Confidence 588999999999999999985 344433310 000 1123456889999999999999999999999988875421
Q ss_pred chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH
Q 000098 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~-~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2256)
..+.+.++|.+...+.|++|.+|..++.+++.++..+|.++ .+.++|.++..+.+ .+..+|..++.+++.++..+|.
T Consensus 397 -~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 397 -RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp -HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCc
Confidence 23557789999999999999999999999999999998764 45789999888875 5677999999999999999998
Q ss_pred h-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1692 V-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1692 ~-~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
+ +.+.++|.+.....++++.+|..++.+++.++..+|..+ |.+.++|.++..+.|++++||..+++++..+...++.
T Consensus 475 ~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 475 EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 7 457899999988889999999999999999999988764 8899999999999999999999999999999877766
Q ss_pred cch-hchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1771 TSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1771 ~~~-~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
... +.++|.+.+...|.+|.+|..+.+.++.+
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 543 46888888888999999999999988765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=266.29 Aligned_cols=311 Identities=26% Similarity=0.471 Sum_probs=282.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cCc
Q 000098 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLF 1414 (2256)
Q Consensus 1337 ~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~--~~~ 1414 (2256)
..+..+++.+..++ ...|+.++..++.++.+.+......+.++..+.+.+.++++. |+|+.++..|++..+ ..+
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCc
Confidence 34555666666554 566888999999998865444333457899999999888666 999999999997765 478
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccC-CChhHHHHHHHHHHHHHhhChhhH
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~-~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
+||+-.++|.++..++|....||++|..++..++..++++.++.++|.++..+.+ ..|++|.+|+.+++.++..+|+++
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999985 479999999999999999999999
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhh
Q 000098 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1494 ~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~ 1573 (2256)
...+|+++|.+.+++.|..++|..+|..++..+|..+.|..+..++|.|++++.+| +.+.+|++.|..++|+..++.|.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHH
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999 45889999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhCc
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE 1652 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~g~ 1652 (2256)
++.++|+|.++|.+++..++++++.++.|||+++.++.+..||++.|+|.+..... -.+|++|+.+.+|+..+.+..+.
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999776 46899999999999999876553
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-19 Score=251.84 Aligned_cols=718 Identities=12% Similarity=0.122 Sum_probs=420.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCCCC
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~~~ 1128 (2256)
.++.+++..+.+||++.|++|++.|+++... |....+...+ ...+.+.++|-+|.. .|..+..+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 4566778888999999999999999987522 3222233333 344567777776554 455555444
Q ss_pred CCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHH
Q 000098 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2256)
Q Consensus 1129 ~~~~-~~ll~~l~~---~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~ 1203 (2256)
+..+ ..+++.+.+ ....||.+.+++++.++.. || .|++++..+.+....... + .-++...+..+...|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~-~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---P-NVSADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---c-cCCCHHHHHHHHHHHHH
Confidence 4445 677776653 3689999999999999864 77 888888888876432100 0 00122356777777776
Q ss_pred hhh-hhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCC--ChhhhhhhhhHH
Q 000098 1204 AAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGV 1280 (2256)
Q Consensus 1204 l~~-~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~--~~~~~~~vr~~a 1280 (2256)
+++ ++..+ -.++...++.. +. ...+.+++.+..++..... .+.....++..+
T Consensus 155 l~EEi~~~~-------------~~~~r~~~~~~--------l~----~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~a 209 (971)
T 2x1g_F 155 IPEEAQVIH-------------TSVKRVVLRAE--------IA----KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRA 209 (971)
T ss_dssp HHHHHHHCC-------------CSSCHHHHHHH--------HH----TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred hHHHHhccC-------------cHHHHHHHHHH--------HH----HHHHHHHHHHHHHHhcccCCCCCccchhHHHHH
Confidence 664 22110 00111111111 11 1244555666666653211 111122577788
Q ss_pred HHHHHHHHh--hhccCCcchHHHHHHHHHHc----------------CCCCHHHHHHHHHhhHHhHHhhc-Cc----hHH
Q 000098 1281 VIFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APT 1337 (2256)
Q Consensus 1281 v~~L~~La~--~l~~~~~~i~~il~~Ll~~L----------------~~~~~~Vq~~~~~~L~~lv~~~~-~~----~~~ 1337 (2256)
+.+++.... .++.. ....+++.++. | .++++.+++.+.+|+..++.... .+ +..
T Consensus 210 l~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~ 286 (971)
T 2x1g_F 210 VKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFV 286 (971)
T ss_dssp HHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHH
T ss_pred HHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHH
Confidence 888876655 33322 23456665655 4 11456788899999998886421 11 223
Q ss_pred HHHHHHHH---Hh---cCCCH---HHHHHHHHHHHHHHhhhCcc-----------cch-hhcHHHHHHHHHhC----CCC
Q 000098 1338 LVSRLLDQ---LM---KSDKY---GERRGAAFGLAGVVKGFGIS-----------SLK-KYGIAATLREGLAD----RNS 1392 (2256)
Q Consensus 1338 ~l~~Ll~~---L~---~~~~~---~vR~~Aa~~L~~lv~~~g~~-----------~~~-~~~il~~L~~~l~~----~~~ 1392 (2256)
+++.++.. +. .+++. ...+..+..+..+....... ... -..+++.+.+.... ..+
T Consensus 287 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 366 (971)
T 2x1g_F 287 LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVE 366 (971)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTT
T ss_pred HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcc
Confidence 33333321 11 22232 44555555555555321100 000 11455555555433 235
Q ss_pred HHHHHHHHHHHHHHHHHh-c-----------cCchHhHHHHHHHHHHHcC---CC-----c-------HHHHHHHHHHHH
Q 000098 1393 AKRREGALLAFECLCEKL-G-----------RLFEPYVIQMLPLLLVAFS---DQ-----V-------VAVREAAECAAR 1445 (2256)
Q Consensus 1393 ~~~Re~al~al~~L~~~l-~-----------~~~~pyv~~llp~ll~~l~---D~-----~-------~~VR~aa~~al~ 1445 (2256)
..++..++..|..+++.. + ..+.|++.++++.++..+. |. + ...|.++.+++.
T Consensus 367 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~ 446 (971)
T 2x1g_F 367 ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFM 446 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHH
Confidence 677888888888887732 1 2346778888888887763 11 1 146778888888
Q ss_pred HHHhhhhHhhHHhHHHHHHHhccC-----CChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh-cCCCHHHHHHH
Q 000098 1446 AMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSAG 1519 (2256)
Q Consensus 1446 ~l~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L-~D~~~~VR~aA 1519 (2256)
.++..++...+..+++.+.+.+.+ .+|+.|.+++.++|.+++++++.....++.+++.+..+. .|.++.||..+
T Consensus 447 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 447 YCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 888777755556677766666654 799999999999999999988766678888888444433 26799999999
Q ss_pred HHHHHHHHhhcCch--hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1520 QTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1520 ~~aL~~l~~~i~~~--~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
+++++++++.+... ++.. ++|.+.+++ + +.++..|+
T Consensus 527 ~~~l~~~~~~l~~~~~~l~~---------------------------------------vl~~l~~~l-~--~~v~~~A~ 564 (971)
T 2x1g_F 527 LETMGSYCNWLMENPAYIPP---------------------------------------AINLLVRGL-N--SSMSAQAT 564 (971)
T ss_dssp HHHHHHTHHHHC----CHHH---------------------------------------HHHHHHHHH-H--SSCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH---------------------------------------HHHHHHHHh-C--hHHHHHHH
Confidence 99999999876521 2233 334444444 2 46778888
Q ss_pred HHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhh----
Q 000098 1598 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK---- 1667 (2256)
Q Consensus 1598 ~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~---- 1667 (2256)
.++.++++.. ...+.||++.++..+...+.. .....+..+.++++.++...+++ ++..+++.+++.+.
T Consensus 565 ~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 642 (971)
T 2x1g_F 565 LGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQ 642 (971)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8898888743 356889999999999999987 46789999999999999877633 45555555555443
Q ss_pred cCC-CHHHHHHHH---HHHHHHHHHhcH----------------hHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhHh
Q 000098 1668 SDN-SNVERSGAA---QGLSEVLAALGT----------------VYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPR 1725 (2256)
Q Consensus 1668 ~~~-~~~~R~~aa---~~L~~i~~~~g~----------------~~l~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~ 1725 (2256)
+.. +...+.... ..++.++.+++. .+.+.++|.+...+.+ .+..+.+.++.+++.++.
T Consensus 643 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 643 ADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 221 222333333 345555555542 1356677776666543 367899999999999999
Q ss_pred hhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc-chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2256)
Q Consensus 1726 ~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~-~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~ 1804 (2256)
.+|.+|.||++.+++.++..+..... ..++..+..++..++.+ .....+..+ +..+..
T Consensus 723 ~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~------------------~~~~~~ 781 (971)
T 2x1g_F 723 NLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQL------------------LREFIQ 781 (971)
T ss_dssp HHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHH------------------HHHHHH
T ss_pred hhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHH------------------HHHHHH
Confidence 99999999999999999988875421 23556666666666542 011111111 111000
Q ss_pred hhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH--HH
Q 000098 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EI 1882 (2256)
Q Consensus 1805 ~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~--~~ 1882 (2256)
.+...+..-. .. ..+...++++.....+..+..+.|..+. +.
T Consensus 782 ---------------------------~~~~~l~~~~-~~--------~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~ 825 (971)
T 2x1g_F 782 ---------------------------HSFKLFESTP-EQ--------NFSNISDTMETFFGCLTQIIKKIPQVLEDKTL 825 (971)
T ss_dssp ---------------------------HHHHHHTSCT-TT--------HHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTS
T ss_pred ---------------------------HHHHHHhccc-cc--------CCccCchHHHHHHHHHHHHHHhCcHHHcCCcc
Confidence 0000000000 00 0011356788888888888888886654 66
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1883 -MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2256)
Q Consensus 1883 -l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~ 1915 (2256)
++.+++..+..+..++......+...+..++..
T Consensus 826 ~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 826 AYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp CHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 788888887777766666666777788777665
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-18 Score=242.25 Aligned_cols=729 Identities=11% Similarity=0.118 Sum_probs=396.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhh-----
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDR----- 1123 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~----- 1123 (2256)
+++.++|.+++|||+++| |++.|++.. ..|.....+..+. +..+.+.++|.+|.. .|..
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il-~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVI-ASTNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468889999999999999 999998764 1133333344443 334457778877654 5542
Q ss_pred -cCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHH
Q 000098 1124 -YGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2256)
Q Consensus 1124 -~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2256)
...+.+..+ ..+++.+.++...+|..++++++.++. .+|+.|+++++.|.+... ..+...++++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~----------s~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----------NDDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----------SSCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhC----------CCCHHHHHHHHHH
Confidence 111222334 678888777779999999999999986 488889999999887521 1234578888988
Q ss_pred HHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHH---hhccCCChhhh---h
Q 000098 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY---LNKKASDEEKY---D 1274 (2256)
Q Consensus 1201 L~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~---L~~~~~~~~~~---~ 1274 (2256)
+..+.+.+.... .+++.+...-. ++... ...++..+... +.+..++.... .
T Consensus 147 l~~i~~~~~~~~---------------~~~~~~~~l~~----~l~~~----~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 203 (960)
T 1wa5_C 147 AHSIFKRWRPLF---------------RSDELFLEIKL----VLDVF----TAPFLNLLKTVDEQITANENNKASLNILF 203 (960)
T ss_dssp HHHHHGGGTTSC---------------CCHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHTTCCC--CHHHHHHH
T ss_pred HHHHHHHHHHhh---------------cChHHHHHHHH----HHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888876433210 01111111100 00000 11112222111 22100000000 0
Q ss_pred hhhhHHHHHHHHHHhh-hccC-CcchHHHHHHHHHHcCC--C------C-------HHHHHHHHHhhHHhHHhhcCchHH
Q 000098 1275 LVREGVVIFTGALAKH-LAKD-DPKVHAVVDKLLDVLNT--P------S-------EAVQRAVSSCLSPLMQSMQDEAPT 1337 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~-l~~~-~~~i~~il~~Ll~~L~~--~------~-------~~Vq~~~~~~L~~lv~~~~~~~~~ 1337 (2256)
.+...++.++..+..+ ++.. ...+...++.+...+.. | + +.++..+.+++..++..+.+.+..
T Consensus 204 ~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~ 283 (960)
T 1wa5_C 204 DVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP 283 (960)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122222222110 0000 00122233333332211 0 0 235566666666665544333333
Q ss_pred HHHHHHH----HHhc----CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000098 1338 LVSRLLD----QLMK----SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2256)
Q Consensus 1338 ~l~~Ll~----~L~~----~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~ 1409 (2256)
+++.+++ .+.+ .....++..+...+..+++.-.
T Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~--------------------------------------- 324 (960)
T 1wa5_C 284 MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK--------------------------------------- 324 (960)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh---------------------------------------
Confidence 3333222 2211 1123344444444444332110
Q ss_pred hccCch--HhHHHHH-HHHHHHc-----------------------CCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHH
Q 000098 1410 LGRLFE--PYVIQML-PLLLVAF-----------------------SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463 (2256)
Q Consensus 1410 l~~~~~--pyv~~ll-p~ll~~l-----------------------~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~L 1463 (2256)
....|. +|+.+++ +.++..+ ++....+|.+|...++.++...+...+..+++.+
T Consensus 325 ~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i 404 (960)
T 1wa5_C 325 YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHM 404 (960)
T ss_dssp HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 001111 3333333 2222221 2233468999999999999988865567777777
Q ss_pred HHhcc------CCChhHHHHHHHHHHHHHhhC--hh-hHhh-----hhhhH-HHHHHHhhcCC---CHHHHHHHHHHHHH
Q 000098 1464 LKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVLTDT---HPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1464 l~~L~------~~~w~~R~~a~~~Lg~la~~~--p~-~l~~-----~L~~I-vp~L~~~L~D~---~~~VR~aA~~aL~~ 1525 (2256)
.+.+. +.+|+.|.+|+.++|.++... ++ .... .+..+ ...+.+.+.|+ ++.||..|++++++
T Consensus 405 ~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~ 484 (960)
T 1wa5_C 405 KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYT 484 (960)
T ss_dssp HHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHH
Confidence 66665 678999999999999998642 11 1111 22222 23345566777 99999999999999
Q ss_pred HHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1526 l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
+++.+....+..+ ++.+.+++.+.+..+|..|+.++.++++
T Consensus 485 ~~~~~~~~~l~~~---------------------------------------l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 485 FRNQLTKAQLIEL---------------------------------------MPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp TGGGSCHHHHHHH---------------------------------------HHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHH---------------------------------------HHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 9987633233433 4444455555566888889999999887
Q ss_pred hcC---------CCCcchhhhhhhhHHHHHhhcCCC---H--HHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhc
Q 000098 1606 LVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1606 ~l~---------~~~~l~~~l~~Ll~~L~~~L~d~~---~--~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~ 1668 (2256)
... ....+.||++.+++.|..++.... . ...+.+..+++.++...+++ |++.+++.+...+..
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~ 605 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTI 605 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 422 134588999999999999988641 1 14468899999999988765 556677777666543
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHH
Q 000098 1669 ----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2256)
Q Consensus 1669 ----~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp 1740 (2256)
..+...+.....+++.++...+++ +.+.++|.+...++.......+.++..++.+.... ..|.+|+..++|
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~ 684 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQ 684 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 344456666778888888875544 34566777666666555556666777777666554 556666666777
Q ss_pred HHH--HhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCC
Q 000098 1741 AIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818 (2256)
Q Consensus 1741 ~Ll--~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~ 1818 (2256)
.++ ..+.... .+ ....+.+..++...... +.. +
T Consensus 685 ~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~------------~~~--~----------------------------- 719 (960)
T 1wa5_C 685 PLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI------------FPD--L----------------------------- 719 (960)
T ss_dssp HHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG------------CSC--S-----------------------------
T ss_pred HHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH------------HHH--H-----------------------------
Confidence 666 5544321 11 11222222222111100 000 0
Q ss_pred CCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHhcCC
Q 000098 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-LKEIMPVLMNTLISSLASS 1897 (2256)
Q Consensus 1819 ~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~-l~~~l~~Ll~~L~~~L~~~ 1897 (2256)
+.++..+.....+.. ....+...++.++.+++.. +.+++|.+++.+...+..+
T Consensus 720 ------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 720 ------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp ------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred ------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 001111111122221 1356777888888888887 9999999999999888765
Q ss_pred -CHHHHHHHHHHHHHHHHhhCccchhc---------hHH----HHhhhcCC-CChhhHHhHHHHHHHHHHhh--ChhhhH
Q 000098 1898 -SSERRQVAGRALGELVRKLGERVLPS---------IIP----ILSRGLKD-PSASRRQGVCIGLSEVMASA--GKSQLL 1960 (2256)
Q Consensus 1898 -~~~~R~~A~~aL~~lv~~~~~~~l~~---------llp----~L~~~l~d-~~~~vR~~a~~aL~eii~~~--~~~~l~ 1960 (2256)
....+......++.++-.++....-. +.. .+...+.. .....|..++.++..++... .+..+.
T Consensus 774 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~ 853 (960)
T 1wa5_C 774 KTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYP 853 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCG
T ss_pred CcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHH
Confidence 35555555555555554444431100 111 11111111 13556777777777776543 022233
Q ss_pred hhHhhHHHHHHHHhcC
Q 000098 1961 SFMDELIPTIRTALCD 1976 (2256)
Q Consensus 1961 ~~l~~li~~l~~~L~D 1976 (2256)
+.+..++..+...+..
T Consensus 854 ~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 854 TLISSTMNSIIETASS 869 (960)
T ss_dssp GGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4445555555554443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-18 Score=241.52 Aligned_cols=699 Identities=14% Similarity=0.138 Sum_probs=420.1
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCCC
Q 000098 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD 1127 (2256)
Q Consensus 1057 ~~~~~ll~~-~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~~ 1127 (2256)
.++.+++.. ..+||++.|++|++.|++.... |....+...+ ...+.+.++|-+|.. .|..+..+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQL--LQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHH--hcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 457778888 4569999999999999876421 2222233333 334567777776554 46555544
Q ss_pred CCCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHH
Q 000098 1128 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202 (2256)
Q Consensus 1128 ~~~~~-~~ll~~l~~---~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~ 1202 (2256)
-+..+ ..+++.+.+ ....+|.+.+++++.++. .||+.|++++..|.+..... .+ ..++...+..+...|.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~----~~-~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAE----DS-PVDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhh----cc-CCCcHHHHHHHHHHHH
Confidence 44445 677776654 369999999999999985 58888888888888763210 00 0012246778888888
Q ss_pred Hhhh-hhcc---------------CChhHhHHHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhccccc--cchHHHHHHH
Q 000098 1203 SAAD-VLRT---------------KDLPVIMTFLISRALADTN--ADVRGRMLNAGIMIIDKHGRDNV--SLLFPIFENY 1262 (2256)
Q Consensus 1203 ~l~~-~~~~---------------~~~~~l~~~lv~~~l~D~~--~~VR~~a~~a~~~~i~~~g~~~~--~~Ll~~l~~~ 1262 (2256)
.+.+ .+.. ...+.+++.+ ...+.+.+ ..++..+++|....+. .+.... ..+++.+.++
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll-~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~ 249 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLL-EQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAA 249 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHH-HHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHH
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHH
Confidence 8774 3211 1123344444 34444432 2477777777766655 332222 4556655555
Q ss_pred hhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHH
Q 000098 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRL 1342 (2256)
Q Consensus 1263 L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~L 1342 (2256)
+.. ..+|+.++.++..+...-.+ +.....+..++..+-+..+ .+
T Consensus 250 l~~--------~~~~~~a~~~l~~i~~~~~~--~~~~~~~~~l~~~~~~~~~--------------------------~~ 293 (963)
T 2x19_B 250 LQD--------SELFDSSVEAIVNAISQPDA--QRYVNTLLKLIPLVLGLQE--------------------------QL 293 (963)
T ss_dssp TTS--------TTTHHHHHHHHHHHHTCTTG--GGCHHHHHHHHHHHHTTHH--------------------------HH
T ss_pred hCC--------chHHHHHHHHHHHHHccccc--ccCHHHHHHHHHHHHhhHH--------------------------HH
Confidence 432 14677888888777653211 1112222222221110000 00
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhC---------cccchhhcHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHH
Q 000098 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFG---------ISSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEK 1409 (2256)
Q Consensus 1343 l~~L~~~~~~~vR~~Aa~~L~~lv~~~g---------~~~~~~~~il~~L~~~l~~----~~~~~~Re~al~al~~L~~~ 1409 (2256)
...+.. .+....+..+..+..+..... ...+ ..+++.+.+...+ ..+..++..++..+..+++.
T Consensus 294 ~~~~~~-~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~ 370 (963)
T 2x19_B 294 RQAVQN-GDMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDD 370 (963)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHH
Confidence 000111 112222222223322221110 0111 1344444444443 12334455566666666652
Q ss_pred h-----------ccCchHhHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHHhhhhHhhHHhHHHHH
Q 000098 1410 L-----------GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSL 1463 (2256)
Q Consensus 1410 l-----------~~~~~pyv~~llp~ll~~l~D~~~---------------~VR~aa~~al~~l~~~l~~~~v~~ilp~L 1463 (2256)
. ...+.|++.++++.++..+.-+++ ..|.++.+++..++...+...+..+++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l 450 (963)
T 2x19_B 371 ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKL 450 (963)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 2 124567888888888776632211 23667777888877766655556667766
Q ss_pred HHhc----cCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHh
Q 000098 1464 LKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIAS 1537 (2256)
Q Consensus 1464 l~~L----~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i~~ 1537 (2256)
.+.+ .+.+|+.|.+++.++|.+++++.+.....++.+++.+. .+.++++.||..++++++++++.+.. +++..
T Consensus 451 ~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~ 529 (963)
T 2x19_B 451 GRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINS 529 (963)
T ss_dssp HHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTT
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 6666 66899999999999999999987655566777777544 34556899999999999999876532 12233
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+++.+..++.+ +.++..|+.++.++++. ....+.||+
T Consensus 530 ---------------------------------------vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~ 566 (963)
T 2x19_B 530 ---------------------------------------VLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYA 566 (963)
T ss_dssp ---------------------------------------THHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTH
T ss_pred ---------------------------------------HHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhH
Confidence 34444444443 56778888899999874 335688999
Q ss_pred hhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhC-cC---chHHHHHHHHHHhhc----CCCHHHHH---HHHHHHHH
Q 000098 1618 GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMG-EE---NFPDLVSWLLDALKS----DNSNVERS---GAAQGLSE 1684 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g-~~---~~~~lip~Ll~~L~~----~~~~~~R~---~aa~~L~~ 1684 (2256)
+.++..+...+.. .....|..+.++++.++...+ ++ ++..+++.+.+.+.. ..+...+. ....+++.
T Consensus 567 ~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 567 ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998875 467899999999999998776 22 455666666555432 22333333 34456777
Q ss_pred HHHHhcH---------------------h----HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhHhhhChhHHHHHHH
Q 000098 1685 VLAALGT---------------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2256)
Q Consensus 1685 i~~~~g~---------------------~----~l~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~~f~~yl~~ 1737 (2256)
+.++++. + .++.++|.+...+.. .+..+++.++.+++.++..+|+.|.||++.
T Consensus 647 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~ 726 (963)
T 2x19_B 647 LFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ 726 (963)
T ss_dssp HHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHH
T ss_pred HHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 7777652 1 345566666555432 467899999999999999999999999998
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhhccc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccc
Q 000098 1738 VLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2256)
Q Consensus 1738 ilp~Ll~~L~d-~~~~VR~~Al~al~~iv~~~~~~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~ 1815 (2256)
+++.++..... +.+ ..+..+..++..++... +...++.+ +.
T Consensus 727 ~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~~~~~~~~~~------------------l~--------------- 769 (963)
T 2x19_B 727 LCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEPAHFPPIEAL------------------FL--------------- 769 (963)
T ss_dssp HHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCTTTCHHHHHH------------------HH---------------
T ss_pred HHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCcchHHHHHHH------------------HH---------------
Confidence 88887765443 111 12333444444333210 00011110 00
Q ss_pred cCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHh-cC--CcHHHHHHHHHHHHHHHhcChhHHH--HH-HHHHHHH
Q 000098 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SD--VSLSVRQAALHVWKTIVANTPKTLK--EI-MPVLMNT 1889 (2256)
Q Consensus 1816 ~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~-~D--~~~~Vr~aA~~~l~~l~~~~~~~l~--~~-l~~Ll~~ 1889 (2256)
.++..++... .+ ....++......+..+..+++..+- +. ++.+++.
T Consensus 770 ----------------------------~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~ 821 (963)
T 2x19_B 770 ----------------------------LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQC 821 (963)
T ss_dssp ----------------------------HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHH
Confidence 0111111111 11 2467888888888888888776542 44 7778888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1890 LISSLASSSSERRQVAGRALGELVRKLG 1917 (2256)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~aL~~lv~~~~ 1917 (2256)
++..+...+..+...+...+..++...+
T Consensus 822 ~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 822 AVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 8888898899999999999999887654
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=227.59 Aligned_cols=395 Identities=13% Similarity=0.149 Sum_probs=297.4
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh----
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~---- 1207 (2256)
..++..+.+++..+|+.|.+.|..+... .|+.+..++..+.+ .+.+..+|..++..|+++...
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~------------~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN------------PGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc------------CCCChHHHHHHHHHHHHhccccchH
Confidence 4567767789999999999999886543 44444444443332 123578999999999998632
Q ss_pred -----------hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHhhccCCChhhhhh
Q 000098 1208 -----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1208 -----------~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
++.+....+.+.++ .++.+.++.+ ..+..+...+....++ ..|+.++|.+...+.+. . .+..
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~-~---~~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-N---STEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT-T---CCHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccC-C---CCHH
Confidence 22222344556554 5788888888 8888888887776655 47999999998887651 1 0236
Q ss_pred hhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHcCCC--CHHHHHHHHHhhHHhHHhhcCc-----hHHHHHHHHHHH
Q 000098 1276 VREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~--~~~~i~~il~~Ll~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~-----~~~~l~~Ll~~L 1346 (2256)
+|+.++.+++.+++.... ..+++..+++.+...+.++ +..||..+++|+..++....+. ...++...+..+
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 899999999999986532 2456788899999999988 7999999999988765443211 223333344445
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcccch-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------
Q 000098 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL-------------- 1410 (2256)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~-~~-~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l-------------- 1410 (2256)
..+.+..+|..++.+|..++...+..... -. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 56677999999999999999876532111 12 5777777777765 7889999999999998763
Q ss_pred -------ccCchHhHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHH
Q 000098 1411 -------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2256)
Q Consensus 1411 -------~~~~~pyv~~llp~ll~~l~D-------~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~ 1476 (2256)
...+++|+..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.|.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~ 384 (462)
T 1ibr_B 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (462)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHH
T ss_pred CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 123467888999999888753 345799999999999999888655688899999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhhh
Q 000098 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~Ll~~l 1546 (2256)
+++.++|.+++++. +.+..+++.++|.+...++|+++.||.+|+++|+++++.+++ ++++.+++.|++.+
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 99999999998765 567778899999999999999999999999999999998764 35677777777655
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-15 Score=219.52 Aligned_cols=588 Identities=11% Similarity=0.093 Sum_probs=349.4
Q ss_pred HHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HH
Q 000098 1050 LCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IW 1121 (2256)
Q Consensus 1050 ~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w 1121 (2256)
+..-.+..++.++|..+++|+++.|++|++.|++.... |....+...++ ..+.+.++|.+|.. .|
T Consensus 9 ~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~W 81 (1049)
T 3m1i_C 9 FSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRKW 81 (1049)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHTG
T ss_pred CCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhhC
Confidence 33344557788999999999999999999999876422 22233344433 33557777777544 56
Q ss_pred hhcCCCCCCCh-HhHHHhhcCC---------CHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 000098 1122 DRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190 (2256)
Q Consensus 1122 ~~~~~~~~~~~-~~ll~~l~~~---------~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~ 1190 (2256)
..++.+.+..+ ..+++++.+. +..+|.+.+++++.++.. ||+.|+++++.|.+... .+
T Consensus 82 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-----------~~ 150 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-----------SS 150 (1049)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-----------TC
T ss_pred ccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-----------cC
Confidence 55554444455 6677766532 478999999999999864 89999999999988631 11
Q ss_pred cchhHHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCCh
Q 000098 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDE 1270 (2256)
Q Consensus 1191 ~~~R~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~ 1270 (2256)
...+.++..+|..+.+-+.+-.. .+....-|...- ..+. +....+++.+..++... .
T Consensus 151 ~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk----~~l~----~~~~~i~~~~~~~l~~~-~-- 207 (1049)
T 3m1i_C 151 VNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLK----NSMS----KEFEQIFKLCFQVLEQG-S-- 207 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHC-C--
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHH----HHHH----HHHHHHHHHHHHHHHhc-C--
Confidence 23466777777777653221000 000111111100 1111 12445556666666542 1
Q ss_pred hhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh-cCc-------hHHHHHHH
Q 000098 1271 EKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSRL 1342 (2256)
Q Consensus 1271 ~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~-~~~-------~~~~l~~L 1342 (2256)
+..++..++.+++....+.+.....-..+++.+++.+. +++.++..+.+|+..++... .+. +..+++.+
T Consensus 208 --~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~ 284 (1049)
T 3m1i_C 208 --SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1049)
T ss_dssp --CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH
Confidence 12567777777776555443110000113343332211 26778888889988887652 121 11222223
Q ss_pred HHHHh-----------------cCCCHHHHHHHHHHHHHHHhhhC-----cccchh--hcHHHHHHHHHhCCCCHHHHHH
Q 000098 1343 LDQLM-----------------KSDKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRREG 1398 (2256)
Q Consensus 1343 l~~L~-----------------~~~~~~vR~~Aa~~L~~lv~~~g-----~~~~~~--~~il~~L~~~l~~~~~~~~Re~ 1398 (2256)
+..+. .+.+...++..+..+..++.... ...... ..+++.+.+....+ +..++..
T Consensus 285 l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~~ 363 (1049)
T 3m1i_C 285 LQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFKT 363 (1049)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHHH
T ss_pred HHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHHH
Confidence 33221 12234444455555544443221 000111 13556666555555 7788888
Q ss_pred HHHHHHHHHHHh------ccCchHhHHHHHHHHHHHcCCC-------------------c---HHHHHHHHHHHHHHHhh
Q 000098 1399 ALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMSQ 1450 (2256)
Q Consensus 1399 al~al~~L~~~l------~~~~~pyv~~llp~ll~~l~D~-------------------~---~~VR~aa~~al~~l~~~ 1450 (2256)
++..|..+++.+ ...+.+++.++++.++..+.-+ + ...|.++.+++..++..
T Consensus 364 ~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~ 443 (1049)
T 3m1i_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL 443 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc
Confidence 888888888843 2456788999999888765211 1 14577788888888765
Q ss_pred hhHhhHHhHHHHHHHhcc--CCChhHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHhhc-----CCCHHHHHHHHHH
Q 000098 1451 LSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQTA 1522 (2256)
Q Consensus 1451 l~~~~v~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~~~p~~l~-~~L~~Ivp~L~~~L~-----D~~~~VR~aA~~a 1522 (2256)
.+...+..+++.+-+.+. +.+|+.|.+++.++|.++++..+... .+++.+++.+..+.. |+++.||..++++
T Consensus 444 ~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~ 523 (1049)
T 3m1i_C 444 NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYV 523 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Confidence 554444666666666664 47899999999999999987765533 447888888877543 5678888889999
Q ss_pred HHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2256)
Q Consensus 1523 L~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~ 1602 (2256)
++++++.+.... ..+..+++.+..++.+.++.++..||.++.+
T Consensus 524 lgry~~~~~~~~-------------------------------------~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~ 566 (1049)
T 3m1i_C 524 VGQYPRFLKAHW-------------------------------------NFLRTVILKLFEFMHETHEGVQDMACDTFIK 566 (1049)
T ss_dssp HHHCHHHHHHCH-------------------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH-------------------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999987653210 1122344455555666667888888888888
Q ss_pred HhhhcCC------CCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCc-CchHHHHHHHHHHhhcCCCHHHH
Q 000098 1603 MCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVER 1675 (2256)
Q Consensus 1603 L~~~l~~------~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~-~~~~~lip~Ll~~L~~~~~~~~R 1675 (2256)
+++.... +..+.||++.++..+..++.+...+-+....++++.++...++ +....++..++..+..
T Consensus 567 l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~------- 639 (1049)
T 3m1i_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM------- 639 (1049)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHH-------
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------
Confidence 8874321 1223499999999999998887777778889999999987763 2222333333222111
Q ss_pred HHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC-CHH-HH--HHHHHHHHHhHhhhChhHHHHHHHHHHHHH
Q 000098 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VR--DGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743 (2256)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~-~~~-vR--~~al~~l~~La~~~g~~f~~yl~~ilp~Ll 1743 (2256)
.+..+ +.....+..+. ++. ++ ...+.++..++..+|..|.|+++.+++.++
T Consensus 640 -----~~~~~------------~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 640 -----AWDTI------------VEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp -----HHHHH------------HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred -----HHHHH------------HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 00011 10011111100 111 12 133567788899999999999887776554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-17 Score=210.68 Aligned_cols=329 Identities=17% Similarity=0.181 Sum_probs=262.2
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh-hHHhHHHHHHHhccCC--ChhHHHHHHHHHHHHHhhC-hhhHh
Q 000098 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCA-PQQLS 1494 (2256)
Q Consensus 1419 ~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~-~v~~ilp~Ll~~L~~~--~w~~R~~a~~~Lg~la~~~-p~~l~ 1494 (2256)
..+...++..+.++++.+ ..+..++..++....+. .++.++|.+++.+.++ ++..|.+++.+|+.+++.. ++.+.
T Consensus 89 ~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 89 REVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence 345566777788888888 88889999998875443 5788999999999988 9999999999999999876 67777
Q ss_pred hhhhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChh
Q 000098 1495 QCLPKIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 1572 (2256)
Q Consensus 1495 ~~L~~Ivp~L~~~L~D~--~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 1572 (2256)
.+++.+++.+..++.|. ++.||.+|++++..+...+.+. .. ...
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~-------------~~~-------------------- 213 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FD-------------KES-------------------- 213 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH-HT-------------SHH--------------------
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh-hh-------------hhH--------------------
Confidence 88899999999999998 7999999999999876433210 00 000
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh-hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhh-
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM- 1650 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~-~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~- 1650 (2256)
....+++.+.+.+.+.++++|..++.++..++.. .++.+.+|++ .+++.+...+.|.++.+|..++..++.+++..
T Consensus 214 ~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~ 291 (462)
T 1ibr_B 214 ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (462)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 0112455556666778889999999999999984 3456778888 99999999999999999999999999998753
Q ss_pred -----------------C--cC----chHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHH
Q 000098 1651 -----------------G--EE----NFPDLVSWLLDALKS------DNSNVERSGAAQGLSEVLAALGTVYFEHILPDI 1701 (2256)
Q Consensus 1651 -----------------g--~~----~~~~lip~Ll~~L~~------~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~l 1701 (2256)
. .. +.+.++|.+++.+.+ +.++..|..++.+++.++..+|...+..++|.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l 371 (462)
T 1ibr_B 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371 (462)
T ss_dssp HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 11 236788888888854 234568999999999999999977888899999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhHhhhC-hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc-----chhc
Q 000098 1702 IRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-----SLPL 1775 (2256)
Q Consensus 1702 l~~l~~~~~~vR~~al~~l~~La~~~g-~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~-----~~~~ 1775 (2256)
...+++++|.+|.+++.+++.++.... ..+.++++.++|.++..+.|+++.||..|+.++..+...++.. .++.
T Consensus 372 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (462)
T 1ibr_B 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 999999999999999999999998665 4466788999999999999999999999999999999887653 2344
Q ss_pred hHHHHHhhc
Q 000098 1776 LLPAVEDGI 1784 (2256)
Q Consensus 1776 llp~L~~~l 1784 (2256)
++|.+...+
T Consensus 452 ll~~Ll~~L 460 (462)
T 1ibr_B 452 LLQCLIEGL 460 (462)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHHHh
Confidence 555554433
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-14 Score=201.79 Aligned_cols=719 Identities=10% Similarity=0.035 Sum_probs=414.3
Q ss_pred HHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC----chHhHH-HHHHHHH
Q 000098 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----FEPYVI-QMLPLLL 1426 (2256)
Q Consensus 1352 ~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~----~~pyv~-~llp~ll 1426 (2256)
...|+.|-..|..+-+.. +....+.+.+....+..+|..|...+......-... -..++. .+++.+.
T Consensus 21 ~~~r~~A~~~L~~~~~~p--------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 21 SQNQAITHEWLTDAEASP--------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIV 92 (971)
T ss_dssp TTC----CHHHHHTTTST--------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHH
Confidence 345655555554432211 222333344444446777777777666665542111 122332 3555555
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCC------ChhHHHHHHHHHHHHHhhC-----------
Q 000098 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCA----------- 1489 (2256)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~------~w~~R~~a~~~Lg~la~~~----------- 1489 (2256)
...++ ...||.....++..++....+ .++.+++.++..+.++ +...+..++.+|..+.+..
T Consensus 93 ~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~ 170 (971)
T 2x1g_F 93 RFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVV 170 (971)
T ss_dssp HHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHH
Confidence 54433 488999999999999988655 7888899998887653 4557778888888777531
Q ss_pred -hhhHhhhhhhHHHHHHHhhcCC-C-------HHHHHHHHHHHHHHHh--hcCchhHHhHHHHHHhhh------------
Q 000098 1490 -PQQLSQCLPKIVPKLTEVLTDT-H-------PKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGL------------ 1546 (2256)
Q Consensus 1490 -p~~l~~~L~~Ivp~L~~~L~D~-~-------~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~Ll~~l------------ 1546 (2256)
.+.+...++.+++.+..++.+. + ..++..+..++..+.. .++......+++.++. +
T Consensus 171 ~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~ 249 (971)
T 2x1g_F 171 LRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAG 249 (971)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhcccccccc
Confidence 1334556777888777777532 1 2789999999998887 4543333566776665 4
Q ss_pred ----CCCChhHH-HHHHHHHhcccc-c-CCChhhHhhHHHHHHH-------hhcCCC---HHHHHHHHHHHHHHhhh---
Q 000098 1547 ----TDPNDHTK-YSLDILLQTTFV-N-TVDAPSLALLVPIVHR-------GLRERS---AETKKKAAQIVGNMCSL--- 1606 (2256)
Q Consensus 1547 ----~d~~~~vr-~al~~L~~~~~~-~-~~~~~~l~~i~p~L~~-------~L~d~~---~~vR~~a~~~l~~L~~~--- 1606 (2256)
.++++..+ .+++.+...-.. . ....+.+..++|.+.. ...+.+ .+.....+.++..+++.
T Consensus 250 ~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~ 329 (971)
T 2x1g_F 250 DGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHST 329 (971)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHH
T ss_pred ccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 11223444 355554431110 0 1112233334444332 223333 25566667777766642
Q ss_pred -cC----C-CCcchhhhhhhhHHHHHhhcC-----CCHHHHHHHHHHHHHHHHhh-C-----c---------CchHHHHH
Q 000098 1607 -VT----E-PKDMIPYIGLLLPEVKKVLVD-----PIPEVRSVAARAIGSLIRGM-G-----E---------ENFPDLVS 1660 (2256)
Q Consensus 1607 -l~----~-~~~l~~~l~~Ll~~L~~~L~d-----~~~~VR~~a~~aL~~L~~~~-g-----~---------~~~~~lip 1660 (2256)
+. . .....+++..+++.+..+... .+.++...++..+..+++.. . . .++..+++
T Consensus 330 ~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 409 (971)
T 2x1g_F 330 LLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTR 409 (971)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 10 0 000224566677777776543 46788889999888887632 1 0 13455666
Q ss_pred HHHHHhhcCC-------CH-------HHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC-----CCHHHHHHHHHHHH
Q 000098 1661 WLLDALKSDN-------SN-------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFK 1721 (2256)
Q Consensus 1661 ~Ll~~L~~~~-------~~-------~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~-----~~~~vR~~al~~l~ 1721 (2256)
.++..+.-++ +. .-|..++..+..++..+|...+..+++.+.+.+.+ .+|..|++++.+++
T Consensus 410 ~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 410 ILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 6666653211 11 24556666777777777766677777776666544 68999999999999
Q ss_pred HhHhhhChhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHH
Q 000098 1722 YLPRSLGVQFQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2256)
Q Consensus 1722 ~La~~~g~~f~~yl~~ilp~Ll~~L~--d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~ll 1799 (2256)
.++........++++.+++ ++..+. |.++.||..++.++..+...+....
T Consensus 490 ~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--------------------------- 541 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--------------------------- 541 (971)
T ss_dssp HTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------------------------------
T ss_pred HHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH---------------------------
Confidence 9988776655577888888 444444 4578888888887776654332110
Q ss_pred HHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHH
Q 000098 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2256)
Q Consensus 1800 g~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l 1879 (2256)
+....++..++..+ | ..|+..|..++..++..++..+
T Consensus 542 ----------------------------------------~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l 578 (971)
T 2x1g_F 542 ----------------------------------------AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQL 578 (971)
T ss_dssp -----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhc
Confidence 01112233333333 2 3467888888888888888889
Q ss_pred HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhhCcc----chhchHHHHh----hhcCCC--ChhhHHhH---H
Q 000098 1880 KEIMPVLMNTLISSLAS--SSSERRQVAGRALGELVRKLGER----VLPSIIPILS----RGLKDP--SASRRQGV---C 1944 (2256)
Q Consensus 1880 ~~~l~~Ll~~L~~~L~~--~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~----~~l~d~--~~~vR~~a---~ 1944 (2256)
.++++.+++.+...+.. -+...+.....+++.++...+.. ++..+++.+. +.+... +++.+... .
T Consensus 579 ~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l 658 (971)
T 2x1g_F 579 KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRL 658 (971)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999888877 35788999999999999876522 3444444433 333332 23233333 3
Q ss_pred HHHHHHHHhhCh------------hhhHhhHhhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhchh---hHHhHHHH
Q 000098 1945 IGLSEVMASAGK------------SQLLSFMDELIPTIRTALCD--SILEVRESAGLAFSTLFKSAGMQ---AIDEIVPT 2007 (2256)
Q Consensus 1945 ~aL~eii~~~~~------------~~l~~~l~~li~~l~~~L~D--~~~~VR~~A~~al~~l~~~~g~~---~~~~ilp~ 2007 (2256)
..++.++...+. +.+.++.+.+++.+...+.+ .+.++.+.+..+++.+...+|.. +++.+++.
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 334444444332 23567788899988887754 36789999999999988877653 34444444
Q ss_pred HHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCC------ccccHhhHHHHHHH
Q 000098 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG------LNFHLGTILPALLS 2081 (2256)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~------l~~~l~~Ilp~Ll~ 2081 (2256)
++..+..... ..++. .++.+...+|.. +.+.+..+...++.
T Consensus 739 l~~~~~~~~~-~~~l~--------------------------------l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 785 (971)
T 2x1g_F 739 IVASFQTRCC-APTLE--------------------------------ISKTAIVMFFKDEGCKPLMQQLLREFIQHSFK 785 (971)
T ss_dssp HHHHCC--CC-HHHHH--------------------------------HHHHHHTTCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCc-hHHHH--------------------------------HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 4444443221 11222 222233333331 22233333444444
Q ss_pred hhCC-------CCHHHHHHHHHHHHHHHhhcch-----hc-HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhc--hhh
Q 000098 2082 AMGD-------DDMDVQSLAKEAAETVTLVIDE-----EG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS--KLY 2146 (2256)
Q Consensus 2082 ~l~~-------~~~~vr~~a~~al~~l~~~~~~-----~~-~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~--~~~ 2146 (2256)
.+.. .++++++.....+..++..... +. +..+++..+..+..+++....+++..+..++... ...
T Consensus 786 ~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~ 865 (971)
T 2x1g_F 786 LFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAH 865 (971)
T ss_dssp HHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 4433 2578888888888888876532 44 7888888888888777777778888888876653 111
Q ss_pred ----hhhhHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhccCC
Q 000098 2147 ----LVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2147 ----~~~y~~~il~~L~~~l~-D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
+..+.+.++..++..+. .....+.+.+...|..+....|
T Consensus 866 ~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~ 909 (971)
T 2x1g_F 866 VTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYA 909 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCc
Confidence 22344555555554332 3344555566666666655444
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-14 Score=190.32 Aligned_cols=700 Identities=14% Similarity=0.111 Sum_probs=433.7
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhh-CcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC
Q 000098 1336 PTLVSRLLDQLMK-SDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~-~~~~~vR~~Aa~~L~~lv~~~-g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~ 1413 (2256)
..-+.+||+.+++ +.+.+.|+.|+.-|--+++.- |.+.+-+.+-+..+.+.+..+++....-.++.++..+|++-...
T Consensus 5 ~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r 84 (810)
T 3now_A 5 STKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84 (810)
T ss_dssp HHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHH
Confidence 3456677777774 446678888988888777642 33333234566777777777578888888888888887754211
Q ss_pred chHhHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH------------------hhHHhHHHHHHHhccCC--Ch
Q 000098 1414 FEPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------QGVKLVLPSLLKGLEDK--AW 1472 (2256)
Q Consensus 1414 ~~pyv~~-llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~------------------~~v~~ilp~Ll~~L~~~--~w 1472 (2256)
....+.. -.|.++..+.-+++.+-.++...+..+...+.+ ..++.++..+++.+.+. +-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (810)
T 3now_A 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG 164 (810)
T ss_dssp HHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh
Confidence 1111221 145666666667777777777777777765542 12456777777887764 45
Q ss_pred hHHHHHHHHHHHHHhhC----hhhHhhhhhhHHHHHHHhhc---CC--------CHHHHHHHHHHHHHHHhhcCchhHHh
Q 000098 1473 RTKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLT---DT--------HPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2256)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~----p~~l~~~L~~Ivp~L~~~L~---D~--------~~~VR~aA~~aL~~l~~~i~~~~i~~ 1537 (2256)
..|-.++++|..-.... +..+.. ..=+..++.+.. +. .+++|..+.-++..+-+......-
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~-- 240 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEA-- 240 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHH--
T ss_pred hhHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchh--
Confidence 67888888776554221 111110 111222222221 11 345666666666666655432100
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh--
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-- 1615 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-- 1615 (2256)
| ......+-..+...+...+.+.+..++.++.++... . .+...
T Consensus 241 ----------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g--~-~~~~~~~ 285 (810)
T 3now_A 241 ----------------K----------------ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG--P-LDVGNQV 285 (810)
T ss_dssp ----------------H----------------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSS--S-HHHHHHH
T ss_pred ----------------H----------------HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcC--C-HHHHHHH
Confidence 0 001111222333334445556666667777777652 2 11111
Q ss_pred h-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC--cCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc--
Q 000098 1616 Y-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-- 1690 (2256)
Q Consensus 1616 ~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g--~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g-- 1690 (2256)
+ .+..++.+..++.+++..++..|..+++.++..-. .......+|+|...+++ .+..+|..++.+|..+....+
T Consensus 286 ~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s-~~~~vr~~Al~~L~kl~s~~~~d 364 (810)
T 3now_A 286 VAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS-KNDGIRVRALVGLCKLGSYGGQD 364 (810)
T ss_dssp HHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTTTTT
T ss_pred HhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcC-CCHHHHHHHHHHHHHhccccccC
Confidence 1 34678999999999999999999999999765311 11233345888888875 456688888888888864332
Q ss_pred -------HhHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHH
Q 000098 1691 -------TVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALG 1759 (2256)
Q Consensus 1691 -------~~~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~ 1759 (2256)
.....++++.+.+.+.++ ++.+|..++.++.+++......- ... ..++|.++..+..++..+...++.
T Consensus 365 ~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~-~lv~d~g~Ip~LV~LL~s~d~~i~~~al~ 443 (810)
T 3now_A 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE-KLIEDKASIHALMDLARGGNQSCLYGVVT 443 (810)
T ss_dssp TSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH-HHHHCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred ccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH-HHHHccchHHHHHHHhCCCChHHHHHHHH
Confidence 123577889999998887 88999999999999975433221 111 468899999998888888888888
Q ss_pred HHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHH---HHHHHH
Q 000098 1760 AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG---RAIIEV 1836 (2256)
Q Consensus 1760 al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~---~~l~~~ 1836 (2256)
++..+...+... ..+|.+.+.- .. ++... . .+++-...+... +.+++.
T Consensus 444 ~L~NLt~~~d~q---~~~~~l~~la----------------~~----s~~~v----~--~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 444 TFVNLCNAYEKQ---EMLPEMIELA----------------KF----AKQHI----P--EEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HHHHHTTCSCCC---CCCCSCGGGT----------------TT----TCCSC----C--CSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCchhh---hhhHHHHHHH----------------HH----hhccC----c--cccccccHHHHHHHHHHHHHC
Confidence 888876533211 1111111000 00 00000 0 000000111111 222221
Q ss_pred hcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1837 LGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2256)
Q Consensus 1837 Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~-~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~ 1915 (2256)
..++.|...+...+..+|+.|+.++..++.+ +..-..++. ..++.++..+.+.+...|..|+++|+.++..
T Consensus 495 -------GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 495 -------GITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT 566 (810)
T ss_dssp -------THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred -------cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC
Confidence 2566666777778899999999999999853 332222222 2456666667888899999999999999875
Q ss_pred hCccc------hhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhH-hhHHHHHHHHhcCCCHHHHHHHHH
Q 000098 1916 LGERV------LPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGL 1987 (2256)
Q Consensus 1916 ~~~~~------l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l-~~li~~l~~~L~D~~~~VR~~A~~ 1987 (2256)
..+.. ....+|.|.+.+..+ +...+..++.+|..+.... .+...... ...++.+...+.+.++.||++|+.
T Consensus 567 ~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 43321 134788888888744 3344567888888776432 11111111 246777878888888889988888
Q ss_pred HHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCC
Q 000098 1988 AFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067 (2256)
Q Consensus 1988 al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~ 2067 (2256)
+++.+.. ++..... +. -|
T Consensus 646 ~L~NLa~--~~~~~~~--------------------------------------------------------~v--~~-- 663 (810)
T 3now_A 646 CLCNLVM--SEDVIKM--------------------------------------------------------FE--GN-- 663 (810)
T ss_dssp HHHHHTT--SHHHHHH--------------------------------------------------------HH--SS--
T ss_pred HHHHHhC--ChHHHHH--------------------------------------------------------HH--hc--
Confidence 8777653 1110000 00 01
Q ss_pred ccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch--hc-H--HHHHHHHHhhcCCCChhhHHHHHHHHHHHHHh
Q 000098 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2256)
Q Consensus 2068 l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~--~~-~--~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~ 2142 (2256)
...++.|+..+..++..+|..+..+++.+....+. .. + ...++.|...+.+++..+|..|+.+++.+...
T Consensus 664 -----~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 664 -----NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp -----SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred -----cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 13567788888888899999999999999874221 11 2 24778888999999999999999999999874
Q ss_pred chhhhhhhH--HHHHHHHHHHcCCC---ChHHHHHHHHHHHHhhc
Q 000098 2143 SKLYLVDEA--PNMISTLIVLLSDS---DSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2143 ~~~~~~~y~--~~il~~L~~~l~D~---d~~Vr~~A~~aL~~l~~ 2182 (2256)
.. +...++ ...+++|..++.++ +..+++.|..||..+.+
T Consensus 739 s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 739 GE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp CH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 33 223332 46788898888654 78999999999999875
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-15 Score=195.84 Aligned_cols=673 Identities=11% Similarity=0.076 Sum_probs=425.3
Q ss_pred HHHHHhhcCCCCCCChHhHHHhhcC-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHhhcCCCCCCCCCCcchh
Q 000098 1117 AEDIWDRYGYDFGTDYSGLFKALSH-SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSL-YIRDIGLGGDNVDAGWLGR 1194 (2256)
Q Consensus 1117 ~~~~w~~~~~~~~~~~~~ll~~l~~-~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~-~~~~~~~~~~~~~~~~~~R 1194 (2256)
|+.+|++.+.. .+...+.+ .+..+.-++-++|+.+++.+++-...++..+-.- +...+. .++-+.-
T Consensus 42 a~~i~~~~~~~------~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~ 109 (810)
T 3now_A 42 AELLYKDHCIA------KVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLD------QKHENCV 109 (810)
T ss_dssp HHHHHHTTHHH------HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH------CCSTTHH
T ss_pred hHHHHhCchHH------HHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHc------CCCHHHH
Confidence 55688877632 34445555 7899999999999999988765444443333111 111111 1122333
Q ss_pred HHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhh
Q 000098 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYD 1274 (2256)
Q Consensus 1195 ~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~ 1274 (2256)
.++...+..+...+...+. +--.-+++.+- .. .+..+..++..+...+.+. . ...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-----------~~-~~~~~~~~~~~l~~~~~~~-~---~~~ 164 (810)
T 3now_A 110 STAQFCLQTILNALSGLKN---------KPDSKPDKELC-----------TR-NNREIDTLLTCLVYSITDR-T---ISG 164 (810)
T ss_dssp HHHHHHHHHHHHHHHTCCS---------STTCCCCHHHH-----------HH-THHHHHHHHHHHHHHHTCT-T---SCH
T ss_pred HHHHHHHHHHHHHHhcccc---------ccccCCcHHHH-----------hh-hhhHHHHHHHHHHHHhhcc-c---cCh
Confidence 4444444444333221100 00001122211 10 1112334444455555442 1 122
Q ss_pred hhhhHHHHHHHHHHhhhccCCcch---HHHHHHHHHHcC---CC--------CHHHHHHHHHhhHHhHHhhc-----Cch
Q 000098 1275 LVREGVVIFTGALAKHLAKDDPKV---HAVVDKLLDVLN---TP--------SEAVQRAVSSCLSPLMQSMQ-----DEA 1335 (2256)
Q Consensus 1275 ~vr~~av~~L~~La~~l~~~~~~i---~~il~~Ll~~L~---~~--------~~~Vq~~~~~~L~~lv~~~~-----~~~ 1335 (2256)
..|+.+++++..-..+.+...+.. ..-+.++++.-. .. .+++|..++-|+..+....+ +.+
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 244 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARF 244 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 567888877765553322111100 012233333221 11 24678888899988887664 456
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~---~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
.+.+..++...+...+......|+.++..+..+... ..+.....++.+...+.++ +...++.|+++++.++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~-~~~~q~~A~~al~~aa~~~~- 322 (810)
T 3now_A 245 TDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD-DELQQRVACECLIAASSKKD- 322 (810)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCcH-
Confidence 677777777777777778888899999999886532 2222336788888888877 78888999999988765422
Q ss_pred CchHhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh---------HhhHHhHHHHHHHhccCC--ChhHHHHHHH
Q 000098 1413 LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---------AQGVKLVLPSLLKGLEDK--AWRTKQSSVQ 1480 (2256)
Q Consensus 1413 ~~~pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~---------~~~v~~ilp~Ll~~L~~~--~w~~R~~a~~ 1480 (2256)
...++. .-+|.+...+..+++.+|..|..++..+..... ...+..+++.+.+.+.++ +..+|..|++
T Consensus 323 -~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Ave 401 (810)
T 3now_A 323 -KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAAD 401 (810)
T ss_dssp -HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred -HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 222222 223888888888888999999999988874321 123578899999999877 8899999999
Q ss_pred HHHHHHhhChhhHhhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh-HHhHHHHHHhhhC----CCCh---
Q 000098 1481 LLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLLMGLT----DPND--- 1551 (2256)
Q Consensus 1481 ~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-i~~lv~~Ll~~l~----d~~~--- 1551 (2256)
+|.+++........-. -..++|.|++++...++.++..|.++|.+++.....+. +..+ ..+-+... .+.+
T Consensus 402 aLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l-~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 402 GLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM-IELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC-GGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH-HHHHHHhhccCcccccccc
Confidence 9999986543222111 24789999999999999999999999999997432110 0000 00001100 0011
Q ss_pred --hHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhh
Q 000098 1552 --HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVL 1628 (2256)
Q Consensus 1552 --~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L 1628 (2256)
.++.=.+.+. -+..+|.+.+.+.+.++.+|..|+.++++++. +...... .-...+|.|..++
T Consensus 481 ~~~v~~r~~~Vv------------eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~~~r~~Vv~~Gaip~Lv~LL 545 (810)
T 3now_A 481 VDFINKRITVLA------------NEGITTALCALAKTESHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMA 545 (810)
T ss_dssp HHHHHHHHHHHH------------HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHH
Confidence 1110011221 12478999999999999999999999999985 2111111 1235788999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcCc------hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH-HHHH
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMGEEN------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHIL 1698 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g~~~------~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l-~~ll 1698 (2256)
.++.+.+|..|+.+|+.++....++. ....+|.|.+.|.++.+...+..++.+|..++..-... .. ...+
T Consensus 546 ~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l 625 (810)
T 3now_A 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence 99999999999999999987543221 13478999998886555555667888888876542111 11 3578
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc---cch
Q 000098 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL 1773 (2256)
Q Consensus 1699 ~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~---~~~ 1773 (2256)
|.+...+.+.++.+|..++.+++.++..-. ....+. ...++.++.++..++..+|..|+.++..+...... ..+
T Consensus 626 ~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii 704 (810)
T 3now_A 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKIL 704 (810)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 899999999999999999999999986322 223344 25789999999999999999999999888653211 112
Q ss_pred --hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH
Q 000098 1774 --PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2256)
Q Consensus 1774 --~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2256)
...+|.|.+.+.+.+.+++..++..+..+... + .+ ..+.+.+. ..+..|..
T Consensus 705 ~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-------------s------~e-~~~~l~e~-------G~i~~L~~ 757 (810)
T 3now_A 705 AIASWLDILHTLIANPSPAVQHRGIVIILNMINA-------------G------EE-IAKKLFET-------DIMELLSG 757 (810)
T ss_dssp TSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-------------C------HH-HHHHHHTS-------THHHHHTT
T ss_pred HHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-------------C------HH-HHHHHHHC-------CCHHHHHH
Confidence 34788999999999999999999999988521 0 11 11222211 24555555
Q ss_pred HhcCC---cHHHHHHHHHHHHHHHh
Q 000098 1852 VRSDV---SLSVRQAALHVWKTIVA 1873 (2256)
Q Consensus 1852 ~~~D~---~~~Vr~aA~~~l~~l~~ 1873 (2256)
.+.+. +..+++.|..++..+..
T Consensus 758 LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 758 LGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp SCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHhCcccCcHHHHHHHHHHHHHHHh
Confidence 54433 57788888888877654
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-13 Score=189.75 Aligned_cols=655 Identities=13% Similarity=0.098 Sum_probs=396.4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccC-----CChhHHHHHHHHHHHHHhhC------
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCA------ 1489 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~R~~a~~~Lg~la~~~------ 1489 (2256)
++..+... .+....||.....++..++...-+..++.+++.+++.+.+ .+...+..++.+|..+.+..
T Consensus 105 ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~ 183 (963)
T 2x19_B 105 LFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLP 183 (963)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCc
Confidence 44444432 2235889999999999998876556688899999988865 24556778888888887531
Q ss_pred -------hhhHhhhhhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHHhhcCchhH--HhHHHHHHhhhCCCChhHHHHHH
Q 000098 1490 -------PQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLD 1558 (2256)
Q Consensus 1490 -------p~~l~~~L~~Ivp~L~~~L~D~~~--~VR~aA~~aL~~l~~~i~~~~i--~~lv~~Ll~~l~d~~~~vr~al~ 1558 (2256)
.+.+...++.+++.+..++.+... .++..+.+++..+.. ++.+.. ..+++.+++.+.++.-. ..+++
T Consensus 184 ~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~-~~a~~ 261 (963)
T 2x19_B 184 QYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELF-DSSVE 261 (963)
T ss_dssp --------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHH-HHHHH
Confidence 122345677888888888876432 488888888877665 433322 67888888888655321 13444
Q ss_pred HHHhccc--ccCCChhhHhhHHHHHHH-------hhcCCCHHHHHHHHHHHHHHhhhcC----CCCcchhhhhhhhHHHH
Q 000098 1559 ILLQTTF--VNTVDAPSLALLVPIVHR-------GLRERSAETKKKAAQIVGNMCSLVT----EPKDMIPYIGLLLPEVK 1625 (2256)
Q Consensus 1559 ~L~~~~~--~~~~~~~~l~~i~p~L~~-------~L~d~~~~vR~~a~~~l~~L~~~l~----~~~~l~~~l~~Ll~~L~ 1625 (2256)
.+...-. ......+.+..+++.+.. .+.+.+.+.....+.++..+++... ......+++..+++.+.
T Consensus 262 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll 341 (963)
T 2x19_B 262 AIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIM 341 (963)
T ss_dssp HHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHH
Confidence 4433110 000012233333333322 2233344555555666666554210 00001245556667666
Q ss_pred HhhcC-----CCHHHHHHHHHHHHHHHHhhC--------------cCchHHHHHHHHHHhhcCCC-------H-------
Q 000098 1626 KVLVD-----PIPEVRSVAARAIGSLIRGMG--------------EENFPDLVSWLLDALKSDNS-------N------- 1672 (2256)
Q Consensus 1626 ~~L~d-----~~~~VR~~a~~aL~~L~~~~g--------------~~~~~~lip~Ll~~L~~~~~-------~------- 1672 (2256)
.+..+ .+..+...+...+..+++... ..++..+++.++..+....+ .
T Consensus 342 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~ 421 (963)
T 2x19_B 342 FCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421 (963)
T ss_dssp HHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHH
Confidence 66654 355667677777777766321 01344555666555532111 0
Q ss_pred HHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC
Q 000098 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNC----SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2256)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l----~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d 1748 (2256)
.-|..+...+..++...|...+..+++.+...+ .+.+|..|++++.+++.++........++++.+++.+. .+.+
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~ 500 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCC
Confidence 124555566667777777666666776666666 56789999999999999988776655567777777444 4454
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHH
Q 000098 1749 ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2256)
Q Consensus 1749 ~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~ 1828 (2256)
+++.||..++.+++.+...+....
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~-------------------------------------------------------- 524 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHP-------------------------------------------------------- 524 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCH--------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCH--------------------------------------------------------
Confidence 577788888777776544322110
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q 000098 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS--SSSERRQVAG 1906 (2256)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~--~~~~~R~~A~ 1906 (2256)
+....++..++..+.+ ..|+..|..++..++..++..+.++++.+++.+...+.. -+...|....
T Consensus 525 -----------~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 525 -----------VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp -----------HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 0111223333333333 356777777888888777777888888888888777764 3578899999
Q ss_pred HHHHHHHHhhC-cc---chhchHHHHhhhcC----C-CChhhHH---hHHHHHHHHHHhhCh------------------
Q 000098 1907 RALGELVRKLG-ER---VLPSIIPILSRGLK----D-PSASRRQ---GVCIGLSEVMASAGK------------------ 1956 (2256)
Q Consensus 1907 ~aL~~lv~~~~-~~---~l~~llp~L~~~l~----d-~~~~vR~---~a~~aL~eii~~~~~------------------ 1956 (2256)
.+++.++...+ +. ++..+++.+.+.+. . .+++.+. ....+++.+...++.
T Consensus 592 eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 671 (963)
T 2x19_B 592 QALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVP 671 (963)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC--------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCC
Confidence 99999998766 22 45555555544432 2 2444433 345566666666542
Q ss_pred ---hhhHhhHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHh----hccCCchHHHHHHHHH
Q 000098 1957 ---SQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA----LEDDQTSDTALDGLKQ 2027 (2256)
Q Consensus 1957 ---~~l~~~l~~li~~l~~~L~--D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~----L~~~~~~~~al~~L~~ 2027 (2256)
....++...+++.+...+. ..+..+.+.++.+++.+....|... ..++|.++.. +.....
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~---------- 740 (963)
T 2x19_B 672 QGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-APMVPQLCEMLGRMYSTIPQ---------- 740 (963)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-GGGHHHHHHHHHHHHHHSCC----------
T ss_pred CCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-cccHHHHHHHHHHHHHcCCc----------
Confidence 1234466777777776653 2356889999999999888777443 2234443332 221110
Q ss_pred HHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHh--CCCccccHhhHHHHHHHh----hC-C--CCHHHHHHHHHHH
Q 000098 2028 ILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA--GPGLNFHLGTILPALLSA----MG-D--DDMDVQSLAKEAA 2098 (2256)
Q Consensus 2028 il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~--g~~l~~~l~~Ilp~Ll~~----l~-~--~~~~vr~~a~~al 2098 (2256)
+ .....++.+...+ ++.+.+++..++..++.. +. + ..++++......+
T Consensus 741 ----------~-------------~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll 797 (963)
T 2x19_B 741 ----------A-------------SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLL 797 (963)
T ss_dssp ----------H-------------HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHH
T ss_pred ----------c-------------HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHH
Confidence 0 1223334444422 233445555554444443 22 2 3689999999999
Q ss_pred HHHHhhcch-----hc-HHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhch------hhhhhhHHHHHHHHHHHcCCCC
Q 000098 2099 ETVTLVIDE-----EG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK------LYLVDEAPNMISTLIVLLSDSD 2166 (2256)
Q Consensus 2099 ~~l~~~~~~-----~~-~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~------~~~~~y~~~il~~L~~~l~D~d 2166 (2256)
..++..+.. +. +..+++.++..+++.+..+..+++..+..++...+ .-+..|...++..++..+.+..
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 877 (963)
T 2x19_B 798 AQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQA 877 (963)
T ss_dssp HHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999986542 33 88899999999999999999999999999886532 1245677888888888776543
Q ss_pred -hHHHHHHHHHHHHhhc
Q 000098 2167 -STTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2167 -~~Vr~~A~~aL~~l~~ 2182 (2256)
....+.....|..+..
T Consensus 878 ~~~~~~~~~~il~~l~~ 894 (963)
T 2x19_B 878 SRSLMDCFADILFALNK 894 (963)
T ss_dssp CGGGHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 3334455555544443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-13 Score=194.31 Aligned_cols=590 Identities=11% Similarity=0.086 Sum_probs=347.1
Q ss_pred HHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHH--------H
Q 000098 1048 NELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------D 1119 (2256)
Q Consensus 1048 ~~~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~--------~ 1119 (2256)
.++.+.++.+.+.+++..+++|++..|++|++.|++.... |....+...++ ..+.++.+|-.|. .
T Consensus 7 l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 7 LDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp GCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHh
Confidence 3445556678899999999999999999999999876422 22223333333 2344567666543 4
Q ss_pred HHhhcCCCCCCCh-HhHHHhhcC----C-----CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCC
Q 000098 1120 IWDRYGYDFGTDY-SGLFKALSH----S-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVD 1188 (2256)
Q Consensus 1120 ~w~~~~~~~~~~~-~~ll~~l~~----~-----~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 1188 (2256)
.|..++.+-+..+ ..+++.+.+ + ...+|.+.+++++.++. .||+.|+.++..+.+...
T Consensus 80 ~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----------- 148 (1023)
T 4hat_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----------- 148 (1023)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT-----------
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc-----------
Confidence 6766655444445 666665532 1 46788999999999985 589999999999988631
Q ss_pred CCcchhHHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCC
Q 000098 1189 AGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS 1268 (2256)
Q Consensus 1189 ~~~~~R~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~ 1268 (2256)
.+...+..+...|+.+.+-..+ + . -.+-...-|....+.... .++.+++.+..+|... .
T Consensus 149 ~~~~~~~~~L~iL~~L~EEV~~--------~--~--~~~l~~~r~~~lk~~l~~--------~~~~I~~ll~~iL~~~-~ 207 (1023)
T 4hat_C 149 SSVNVCENNMIVLKLLSEEVFD--------F--S--AEQMTQAKALHLKNSMSK--------EFEQIFKLCFQVLEQG-A 207 (1023)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT--------S--C--TTTSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC-S
T ss_pred CCHHHHHHHHHHHHHHHHHHHH--------h--h--hccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-C
Confidence 1123355555555555442111 0 0 000011111111111111 1345566666666542 1
Q ss_pred ChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHH-HHcCCCCHHHHHHHHHhhHHhHHhh--cC--chHHHH----
Q 000098 1269 DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD--EAPTLV---- 1339 (2256)
Q Consensus 1269 ~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll-~~L~~~~~~Vq~~~~~~L~~lv~~~--~~--~~~~~l---- 1339 (2256)
. ..+...++.+++.....++...-.-..+++.++ ..|. ++..+.++++||..++... ++ ...+.+
T Consensus 208 ~----~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf 281 (1023)
T 4hat_C 208 S----SSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1023)
T ss_dssp S----CHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHH
Confidence 1 135566777777766654421000013456666 5553 5678899999999988632 22 123222
Q ss_pred HHHHHHH---------------h--cCCCHHHHHHHHHHHHHHHhhhCcccc--hh-hcHHH----HHHHHHhCCCCHHH
Q 000098 1340 SRLLDQL---------------M--KSDKYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAKR 1395 (2256)
Q Consensus 1340 ~~Ll~~L---------------~--~~~~~~vR~~Aa~~L~~lv~~~g~~~~--~~-~~il~----~L~~~l~~~~~~~~ 1395 (2256)
...+..+ . .+++....++-+..+..+......-.. .. .+++. .+......+ ++..
T Consensus 282 ~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~ei 360 (1023)
T 4hat_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-EREL 360 (1023)
T ss_dssp HHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHHH
Confidence 2222222 1 111233333444444444433221110 11 12332 333333333 6766
Q ss_pred HHHHHHHHHHHHHHhc------cCchHhHHHHHHHHHHHcCCCc---------------------H-HHHHHHHHHHHHH
Q 000098 1396 REGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV---------------------V-AVREAAECAARAM 1447 (2256)
Q Consensus 1396 Re~al~al~~L~~~l~------~~~~pyv~~llp~ll~~l~D~~---------------------~-~VR~aa~~al~~l 1447 (2256)
-+.++..|..+.+.+- ..+.|++.++++.++..+.-+. . ..-....+++..+
T Consensus 361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l 440 (1023)
T 4hat_C 361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL 440 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence 6677777777877543 2478889999999987654221 1 1111122566555
Q ss_pred HhhhhHhhHHhHHHHHHHhccC--CChhHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHhhc-----CCCHHHHHHH
Q 000098 1448 MSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSAG 1519 (2256)
Q Consensus 1448 ~~~l~~~~v~~ilp~Ll~~L~~--~~w~~R~~a~~~Lg~la~~~p~-~l~~~L~~Ivp~L~~~L~-----D~~~~VR~aA 1519 (2256)
..-.+.+.++.+++.+.+.+.+ .+|+.|.+++.++|+++++..+ ....+++.++|.++.++. |+.+.||..+
T Consensus 441 ~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~ 520 (1023)
T 4hat_C 441 THLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDI 520 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHH
Confidence 5444544456677777766653 6899999999999999988754 467899999999999886 5667788899
Q ss_pred HHHHHHHHhhcCc-h-hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHH
Q 000098 1520 QTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 1597 (2256)
Q Consensus 1520 ~~aL~~l~~~i~~-~-~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~ 1597 (2256)
+++++++++++.. + +++. ++..+..++.+.++++...||
T Consensus 521 ~~~lGry~~wl~~~~~~L~~---------------------------------------vl~~L~~~l~~~~~~v~~~A~ 561 (1023)
T 4hat_C 521 MYVVGQYPRFLKAHWNFLRT---------------------------------------VILKLFEFMHETHEGVQDMAC 561 (1023)
T ss_dssp HHHHHTCHHHHHHCHHHHHH---------------------------------------HHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHH---------------------------------------HHHHHHHHhhcCCHHHHHHHH
Confidence 9999999887642 1 2233 334445555555667777777
Q ss_pred HHHHHHhhhcC------CCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-hHHHHHHHHHHhhcCC
Q 000098 1598 QIVGNMCSLVT------EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDN 1670 (2256)
Q Consensus 1598 ~~l~~L~~~l~------~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~-~~~lip~Ll~~L~~~~ 1670 (2256)
.++.++|+-+. .+....||++.++..+.....+-.+.-+..+..+++.++.+.+.+. .+.++..|+..+..
T Consensus 562 ~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~-- 639 (1023)
T 4hat_C 562 DTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM-- 639 (1023)
T ss_dssp HHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH--
T ss_pred HHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH--
Confidence 77777776432 1233467999999988888888888888999999999999887441 33344433332221
Q ss_pred CHHHHHHHHHHHHHHHHH--hcHhHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc
Q 000098 1671 SNVERSGAAQGLSEVLAA--LGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2256)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~--~g~~~l~--~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L 1746 (2256)
.+..++.. -+...+. .-...+ -..+.++..++...|..|.|++..+++.+++..
T Consensus 640 ----------~~~~l~~~~~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y 697 (1023)
T 4hat_C 640 ----------AWDTIVEQSTANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY 697 (1023)
T ss_dssp ----------HHHHHHHHHHHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 01111110 0110000 001111 123457778899999999999999999887653
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-13 Score=191.27 Aligned_cols=627 Identities=11% Similarity=0.102 Sum_probs=368.1
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccC-CcHHHHHHHHHHHhh----cCCC--
Q 000098 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHD-PEKSVAEAAEDIWDR----YGYD-- 1127 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d-~~~~~~~~~~~~w~~----~~~~-- 1127 (2256)
+++.+.+..+++| |++.|++|.+-|++.... |....+...++ .... .+.++|-.|....+. ++.+
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL-~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIF-SEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT-TCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 4566667666777 688999999999876422 22223333332 1222 267777777666653 2222
Q ss_pred --CCCCh-HhHHHhhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHH
Q 000098 1128 --FGTDY-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2256)
Q Consensus 1128 --~~~~~-~~ll~~l~-----~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2256)
-...+ ..+++.+. .....+|.+.+++++.++. .||+.|+..+..+.+..... + .+.+..
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~---~~~~~~ 147 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------S---QSEFSN 147 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------C---CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------C---hhHHHH
Confidence 22223 55666554 2467899999999999985 58999998888888774321 1 122223
Q ss_pred HHHHHhh---hhhccCChhHhHHHHHHhhcCCCCHH--HHHHHHHHHHHHHHhhc-cccccchHHHHHHHhhccCCChhh
Q 000098 1199 LALHSAA---DVLRTKDLPVIMTFLISRALADTNAD--VRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEK 1272 (2256)
Q Consensus 1199 ~aL~~l~---~~~~~~~~~~l~~~lv~~~l~D~~~~--VR~~a~~a~~~~i~~~g-~~~~~~Ll~~l~~~L~~~~~~~~~ 1272 (2256)
..++-+. +-+.+... ..+.+ -|..-+ ...+.... +...+..+.++..+... .
T Consensus 148 ~~LriL~~i~EEv~~~~~-------------~~~~~~~~r~~~l---kd~m~~~~~~~i~~~~~~iL~~~~~~--~---- 205 (980)
T 3ibv_A 148 FYLKVLLSIGDEIADSLV-------------LKTDVQIQKDNLV---KDAIRANDMSDIVSFVYEMMLAYSNA--K---- 205 (980)
T ss_dssp HHHHHHHHHHHHHCCCCS-------------CCCHHHHHHHHHH---HHHHHHHTHHHHHHHHHHHHHHHHHT--T----
T ss_pred HHHHHHHHhHHHHHhccc-------------ccCHHHHhhhHHH---HHHHHhccHHHHHHHHHHHHHHHhcc--C----
Confidence 3333332 21111000 01111 111110 11111110 00122233333333321 1
Q ss_pred hhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCc--hHHHHHHH-----HHH
Q 000098 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRL-----LDQ 1345 (2256)
Q Consensus 1273 ~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~--~~~~l~~L-----l~~ 1345 (2256)
+..++..++.+++....+++...-.-..+++.++..|.+ +.++.++++||..++....+. ...++..+ +..
T Consensus 206 ~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~ 283 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK 283 (980)
T ss_dssp CHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence 124566677777665554432110014677777877765 688999999999988765321 11222211 111
Q ss_pred Hhc-CCCHHHHHHHHHHHHHHHhh-----hCcc---------c-chhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000098 1346 LMK-SDKYGERRGAAFGLAGVVKG-----FGIS---------S-LKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2256)
Q Consensus 1346 L~~-~~~~~vR~~Aa~~L~~lv~~-----~g~~---------~-~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~ 1409 (2256)
+.. +++...+++-+..+..+... ..+. . -.-..+++.+.....++ +..+-..++..+....+.
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~ 362 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVS 362 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHH
Confidence 221 34556554444333222111 0110 0 00115777777777776 556666666556555543
Q ss_pred h---------ccCchHhHHHHHHHHHHHcCC-------C----c-----HHHHHHHHHHHHHHHhhhhHhhH-H----hH
Q 000098 1410 L---------GRLFEPYVIQMLPLLLVAFSD-------Q----V-----VAVREAAECAARAMMSQLSAQGV-K----LV 1459 (2256)
Q Consensus 1410 l---------~~~~~pyv~~llp~ll~~l~D-------~----~-----~~VR~aa~~al~~l~~~l~~~~v-~----~i 1459 (2256)
+ ...+.|++.++++.++..+.- . + ...|.... .+..+...+.+..+ . .+
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 363 LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence 2 123467888888888876531 1 1 13555555 44444445554443 3 33
Q ss_pred HHHHHHhcc---CCChhHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHHHHhhc-----CCCHHHHHHHHHHHHH
Q 000098 1460 LPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1460 lp~Ll~~L~---~~~w~~R~~a~~~Lg~la~~~p~~l------~~~L~~Ivp~L~~~L~-----D~~~~VR~aA~~aL~~ 1525 (2256)
.+.+-+.+. +.+|+.+.+++.+|+.++++++... ...+|.+++.+..+++ ++||.||..+++++++
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 334444442 4679999999999999999986532 2467888888888866 8999999999999999
Q ss_pred HHhhcCc-h-hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHH--hhcCCCHHHHHHHHHHHH
Q 000098 1526 VGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVG 1601 (2256)
Q Consensus 1526 l~~~i~~-~-~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~--~L~d~~~~vR~~a~~~l~ 1601 (2256)
+++++.. + ++.. +++.+.. ++.+++.++|..|+.++.
T Consensus 522 ys~~~~~~~~~l~~---------------------------------------~L~~ll~~~gl~~~~~~V~~~a~~af~ 562 (980)
T 3ibv_A 522 YASFFDYESAAIPA---------------------------------------LIEYFVGPRGIHNTNERVRPRAWYLFY 562 (980)
T ss_dssp TGGGGGTCCTTHHH---------------------------------------HHHHHTSTTTTTCCCTTTHHHHHHHHH
T ss_pred HHHHHhcCchhHHH---------------------------------------HHHHHhccccccCCChhHHHHHHHHHH
Confidence 9988752 1 2222 3334444 555666678888899999
Q ss_pred HHhhhcCCCCcchhhhhhhhHHHHHhhcC---C------------------CHHHHHHHHHHHHHHHHhhCc--C----c
Q 000098 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGE--E----N 1654 (2256)
Q Consensus 1602 ~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d---~------------------~~~VR~~a~~aL~~L~~~~g~--~----~ 1654 (2256)
++++.. ...+.||++.++..+..++.- + ..+-+.....++|.++...+. + +
T Consensus 563 ~f~~~~--~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~ 640 (980)
T 3ibv_A 563 RFVKSI--KKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALY 640 (980)
T ss_dssp HHHHHT--TTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHh--hHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999853 346778988888888777652 1 123466789999999987652 1 4
Q ss_pred hHHHHHHHHHHhh----cCCCH-HHHH---HHHHHHHHHHHHhcH---------hHHHHHHHHHHHhcc--CCCHHHHHH
Q 000098 1655 FPDLVSWLLDALK----SDNSN-VERS---GAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDG 1715 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~----~~~~~-~~R~---~aa~~L~~i~~~~g~---------~~l~~ll~~ll~~l~--~~~~~vR~~ 1715 (2256)
+..+++.+++.+. ..... ..+. ....+++.+.+++.. ..+.+.++.++..+. ..+..+|+.
T Consensus 641 l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea 720 (980)
T 3ibv_A 641 CDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGA 720 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5556666555443 22111 1111 334556777777632 245677777766665 468899999
Q ss_pred HHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1716 al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
++.+|.++..++|.++.|+++.++..++....-.. . ...+..+.+++..|+.+
T Consensus 721 ~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e--~-~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 721 VRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE--L-VDVLSFISQLIHIYKDN 773 (980)
T ss_dssp HHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT--H-HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH--H-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996544221 1 23456778888888877
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-13 Score=189.08 Aligned_cols=638 Identities=11% Similarity=0.093 Sum_probs=374.9
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh---------hHhhh
Q 000098 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ---------QLSQC 1496 (2256)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~---------~l~~~ 1496 (2256)
+..+.++...+|.....++..++..--+..++.++|.+++.+.+.+...+.+++.++..+++.... .+...
T Consensus 91 l~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~ 170 (960)
T 1wa5_C 91 VPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLV 170 (960)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 333334558999999999999988755567889999999999988888999999999999875431 11111
Q ss_pred hhhHHHHH-------HHhhcCCCH---HHH------HHHHHHHHHHHhhcCch----hHHhHHHHHHhhhCCCChhHHHH
Q 000098 1497 LPKIVPKL-------TEVLTDTHP---KVQ------SAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTKYS 1556 (2256)
Q Consensus 1497 L~~Ivp~L-------~~~L~D~~~---~VR------~aA~~aL~~l~~~i~~~----~i~~lv~~Ll~~l~d~~~~vr~a 1556 (2256)
+..+.|.+ ..++.+... .+| ..+++++..+...--.. .+...++.+...+..+.+
T Consensus 171 l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p----- 245 (960)
T 1wa5_C 171 LDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNP----- 245 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCC-----
Confidence 22223322 223554322 233 12333332222100001 112222222222221100
Q ss_pred HHHHHhcccccCCChhhHhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc-----
Q 000098 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----- 1629 (2256)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~--~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~----- 1629 (2256)
.... +. --.+. .+.+|+.++.++..+.+. .++.+.+|++.+++.+...+.
T Consensus 246 --------~~~~-d~------------d~~~~~~~~~vk~~~~~~l~~l~~~--~~~~f~~~~~~~~~~~~~~l~~~~~~ 302 (960)
T 1wa5_C 246 --------LLED-PD------------ETEHASVLIKVKSSIQELVQLYTTR--YEDVFGPMINEFIQITWNLLTSISNQ 302 (960)
T ss_dssp --------CCC-------------------CCCHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred --------cccC-Cc------------ccccccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000 00 00000 146788888888888763 334567888888887777764
Q ss_pred CCCHHHHHHHHHHHHHHHHhhC-------cCchHHHH-HHHHHHhh----c------------------CCCHHHHHHHH
Q 000098 1630 DPIPEVRSVAARAIGSLIRGMG-------EENFPDLV-SWLLDALK----S------------------DNSNVERSGAA 1679 (2256)
Q Consensus 1630 d~~~~VR~~a~~aL~~L~~~~g-------~~~~~~li-p~Ll~~L~----~------------------~~~~~~R~~aa 1679 (2256)
.....++..++..+..+++.-. +.+++.++ +.++..+. + +..+..|..+.
T Consensus 303 ~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~ 382 (960)
T 1wa5_C 303 PKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACT 382 (960)
T ss_dssp TTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHH
Confidence 3456788888888877764211 12344444 33333332 0 11123577778
Q ss_pred HHHHHHHHHhcHhHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhHhhh-----C--h-----hHHHHHH-HHHH
Q 000098 1680 QGLSEVLAALGTVYFEHILPDIIRNCS------HQRASVRDGYLTLFKYLPRSL-----G--V-----QFQNYLQ-QVLP 1740 (2256)
Q Consensus 1680 ~~L~~i~~~~g~~~l~~ll~~ll~~l~------~~~~~vR~~al~~l~~La~~~-----g--~-----~f~~yl~-~ilp 1740 (2256)
..+..++..+|...+..+++.+.+.+. +.+|..|++++.+++.++... | . ++.+++. .++|
T Consensus 383 ~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 383 DFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 889999998887677777777766665 678999999999999997532 1 1 4555543 2334
Q ss_pred HHHHhcCCC---CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1741 AILDGLADE---NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1741 ~Ll~~L~d~---~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
. +.|+ ++.||..++.+++.+...+.+
T Consensus 463 ~----l~~~~~~~p~vr~~a~~~lg~~~~~~~~----------------------------------------------- 491 (960)
T 1wa5_C 463 D----LTSNNIPHIILRVDAIKYIYTFRNQLTK----------------------------------------------- 491 (960)
T ss_dssp H----HHCSSCSCHHHHHHHHHHHHHTGGGSCH-----------------------------------------------
T ss_pred H----hcCCCCCCceehHHHHHHHHHHHhhCCH-----------------------------------------------
Confidence 3 3444 677777777666654322111
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc-----------ChhHHHHHHHHH
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN-----------TPKTLKEIMPVL 1886 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~-----------~~~~l~~~l~~L 1886 (2256)
+....++..+...+.|.+..||..|..++..++.. .+..+.++++.+
T Consensus 492 ----------------------~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l 549 (960)
T 1wa5_C 492 ----------------------AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL 549 (960)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH
Confidence 11223444455555666777888888888887763 235578888999
Q ss_pred HHHHHHHhcCCC---HH--HHHHHHHHHHHHHHhhCccc---hhchHHHHhhhc----CCC-ChhhHHhHHHHHHHHHHh
Q 000098 1887 MNTLISSLASSS---SE--RRQVAGRALGELVRKLGERV---LPSIIPILSRGL----KDP-SASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1887 l~~L~~~L~~~~---~~--~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~l----~d~-~~~vR~~a~~aL~eii~~ 1953 (2256)
++.+...+.... .. ....+..|++.++...++.+ .+.+++.+...+ +++ ++..+..++.+++.++..
T Consensus 550 l~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 550 LKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 888888777641 11 34578899999999887763 344444444332 333 556677788999988888
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--hhhHHhHHHHHH--HhhccCCchHHHHHHHHHHH
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLL--HALEDDQTSDTALDGLKQIL 2029 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g--~~~~~~ilp~Ll--~~L~~~~~~~~al~~L~~il 2029 (2256)
.+++...++.+.++|.+...+.....+..+.+...++.+.+... ..++.+++|.+. ..++....-......+...+
T Consensus 630 ~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~ 709 (960)
T 1wa5_C 630 TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFI 709 (960)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHH
Confidence 77777778888999999988876666777777777777766431 133445666666 55544322223334444443
Q ss_pred hhhcccch--hhhh---hhhhcCc-hhhhHHHHHHHHHHHhCCC-ccccHhhHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 000098 2030 SVRTTAVL--PHIL---PKLVHLP-LSAFNAHALGALAEVAGPG-LNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETV 2101 (2256)
Q Consensus 2030 ~~~~~~~l--p~li---~~L~~~p-~~~~~~~aL~~La~~~g~~-l~~~l~~Ilp~Ll~~l~~~-~~~vr~~a~~al~~l 2101 (2256)
....+.+. ..++ .++.... .+......++.++..+|.. +.||++.+++.++..+... .+..+......+..+
T Consensus 710 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~ 789 (960)
T 1wa5_C 710 KTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLI 789 (960)
T ss_dssp HHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHH
Confidence 32222222 2121 1222221 1234567788888888888 9999999999999998655 455554443333333
Q ss_pred Hhhcchhc-------------HHHHHHHHHhhcCC-CChhhHHHHHHHHHHHHHhc---hhhhhhhHHHHHHHHHHHcCC
Q 000098 2102 TLVIDEEG-------------VESLVSELLKGVGD-NQASIRRSSAYLIGYFYKNS---KLYLVDEAPNMISTLIVLLSD 2164 (2256)
Q Consensus 2102 ~~~~~~~~-------------~~~ll~~Ll~~l~~-~~~~vR~~A~~~l~~l~~~~---~~~~~~y~~~il~~L~~~l~D 2164 (2256)
+...+.+. ...+....+..+.. .+...|..++.++..+.... +..+.+..+.++..++.++..
T Consensus 790 ~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 790 SNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred HHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 33222211 11122233333332 23567888888888887755 445556677777777776643
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-14 Score=188.47 Aligned_cols=483 Identities=16% Similarity=0.188 Sum_probs=333.2
Q ss_pred HHHHhccCCChhHHHHHH-HHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHH
Q 000098 1462 SLLKGLEDKAWRTKQSSV-QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLV 1539 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~-~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv 1539 (2256)
.+.+.+.+.+...|..++ .++..+..+. + .+..++.+++++.+++..+|+.+..++..+++. +++. .-++
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~--d----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~ 88 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK--D----VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV 88 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC--C----CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC--C----hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence 344455555555554433 4444333332 2 234556677789999999999999999998764 2433 5567
Q ss_pred HHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhh
Q 000098 1540 PTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2256)
Q Consensus 1540 ~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~ 1618 (2256)
+.+.+.+.++++.+|. |+.+++... .......++|.+.+.+.|+++.+|+.|+.++..++.. .+..+. . +
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~-----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~--~p~~~~-~-~ 159 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR-----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI--NAQMVE-D-Q 159 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC-----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS--SCCCHH-H-H
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh--Chhhcc-c-c
Confidence 8888999999998884 788877632 2335567788899999999999999999999999983 333322 1 3
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH
Q 000098 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2256)
.+++.+..++.|+++.|+..|+.+++.++..-++. ..+..++.++..+.+. ++..+......++.+.. .+.+..
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~-~~~~~~ 237 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNP-KDDREA 237 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCC-CSHHHH
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCC-CChHHH
Confidence 58899999999999999999999999988754422 2245677777777653 44355544444433221 112245
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhh---ChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL---GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~---g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~ 1771 (2256)
..+++.+...+++.++.|+..++.++..+.... .+.+......+.+.+...+ +.++++|..+++++..++.....
T Consensus 238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~- 315 (591)
T 2vgl_B 238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE- 315 (591)
T ss_dssp HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-
Confidence 678888888999999999999999999987543 2334445667777777655 47899999999999998876432
Q ss_pred chhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH
Q 000098 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2256)
Q Consensus 1772 ~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2256)
.+...+..+. ...++.+.+|..+++++..+. +++ ....++..|..
T Consensus 316 ~~~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~---------------~~~-------------------nv~~iv~~L~~ 360 (591)
T 2vgl_B 316 ILKQEIKVFF-VKYNDPIYVKLEKLDIMIRLA---------------SQA-------------------NIAQVLAELKE 360 (591)
T ss_dssp TTTTCTTTTS-CCTTSCHHHHHHHHHHHHHTC---------------CSS-------------------THHHHHHHHHH
T ss_pred HHHHHHHhhe-eccCChHHHHHHHHHHHHHHC---------------Chh-------------------hHHHHHHHHHH
Confidence 2222122221 222445999999998887752 110 01234445555
Q ss_pred HhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhh
Q 000098 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931 (2256)
Q Consensus 1852 ~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~ 1931 (2256)
...+.+..+|..++..++.++...+.....+++.+++.+ .+....++..+..++..+++..... ...+++.|.+.
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll----~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~ 435 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI----QTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCEN 435 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHH
Confidence 667788899999999999999888877777777666554 6778888888899999999875443 35667777777
Q ss_pred cCC-CChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHH
Q 000098 1932 LKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLH 2010 (2256)
Q Consensus 1932 l~d-~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~ 2010 (2256)
+.+ .++.+|..++|.+|+....... .+.++..+...+.+.++.||..+..++..+....... ..+.+..+++
T Consensus 436 l~~~~~~~~~~~~~wilGey~~~~~~------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~ 508 (591)
T 2vgl_B 436 LDSLDEPDARAAMIWIVGEYAERIDN------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLS 508 (591)
T ss_dssp TTTCCSHHHHHHHHHHHHTTCTTCTT------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHcccccccC------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHH
Confidence 764 4688899999998877543321 2345555556667888999999999999888654322 2235555666
Q ss_pred hh
Q 000098 2011 AL 2012 (2256)
Q Consensus 2011 ~L 2012 (2256)
..
T Consensus 509 ~~ 510 (591)
T 2vgl_B 509 LA 510 (591)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-14 Score=194.14 Aligned_cols=502 Identities=16% Similarity=0.164 Sum_probs=344.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCCcch-HH
Q 000098 1222 SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV-HA 1300 (2256)
Q Consensus 1222 ~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~~~i-~~ 1300 (2256)
.+.+.+++...|..++.-....+ ..|.+ +..+++.+.+++.+ + +-.+|..+...+..+++. +|.. .-
T Consensus 19 ~~~L~~~~~~~k~~~~~kli~~~-~~G~d-~~~~~~~vi~l~~s--~----~~~~Krl~yl~l~~~~~~----~~e~~~l 86 (591)
T 2vgl_B 19 KAELNNEKKEKRKEAVKKVIAAM-TVGKD-VSSLFPDVVNCMQT--D----NLELKKLVYLYLMNYAKS----QPDMAIM 86 (591)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHH-HTTCC-CGGGHHHHHHTTSS--S----CHHHHHHHHHHHHHHHHH----SHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHH-HCCCC-hHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHccc----CchHHHH
Confidence 45677788777776654444333 34544 34455555555543 1 125677777777766653 1212 23
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcH
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~i 1379 (2256)
++..+...|.++++.+|..+..+++.+. .++. +.+++.+.. +..+.++.+|+.|+.++..+.+.. ++.+....+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~-~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~ 161 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRK-CLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGF 161 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHH-HSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHhhC-hhhcccccH
Confidence 4566777899999999987777766553 2333 444554554 446778999999999999999843 455443357
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC-chHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~-~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
++.+.+.+.|+ ++.++.+|+.+++.++...++. +-+.....++.++..+.+.++..+....+++..+... ++.....
T Consensus 162 ~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~ 239 (591)
T 2vgl_B 162 LDSLRDLIADS-NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQS 239 (591)
T ss_dssp HHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHH
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHH
Confidence 88898888765 8999999999998887754432 2233445566666666777888877666555443311 1234577
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhh---ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYC---APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 1535 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~---~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i 1535 (2256)
+++.+...+.+.++.++..|+.++..+... .++.+....+.+.+.++.++ ++++.||..|+.++..++...++ .+
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~ 317 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-IL 317 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HH
Confidence 899999999999999999999999988753 24445445567777777655 57899999999999999876432 22
Q ss_pred HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
...+..+....+|| ..+| .+++.+.... .......+++.+...+.+.++++|..++..++.++.. +.
T Consensus 318 ~~~~~~~~~~~~d~-~~Ir~~al~~L~~l~-----~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~------~~ 385 (591)
T 2vgl_B 318 KQEIKVFFVKYNDP-IYVKLEKLDIMIRLA-----SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK------VE 385 (591)
T ss_dssp TTCTTTTSCCTTSC-HHHHHHHHHHHHHTC-----CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT------CH
T ss_pred HHHHHhheeccCCh-HHHHHHHHHHHHHHC-----ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------Ch
Confidence 22222233333555 6665 5888776522 1224567888888999999999999999999999863 23
Q ss_pred hhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH
Q 000098 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2256)
Q Consensus 1615 ~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2256)
+..+..++.+..++.+....++..+..++..+....+.. ...+++.|.+.+.+...+..|..+++.+|++...... .
T Consensus 386 ~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~ 462 (591)
T 2vgl_B 386 QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--A 462 (591)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--H
T ss_pred hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--H
Confidence 445667888899999999999999999999988765533 4567788888888777777888888888887654422 2
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHH
Q 000098 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-AD-ENESVRDAALGAGHV 1763 (2256)
Q Consensus 1695 ~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L-~d-~~~~VR~~Al~al~~ 1763 (2256)
..++..+++.+.+.++.+|..++.++.-+....+....+ .+..+++.. .| .+.+||+.|...+..
T Consensus 463 ~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 463 DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 456666676777778999999999998887766554323 333344443 45 678999988766544
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-11 Score=167.86 Aligned_cols=588 Identities=9% Similarity=0.082 Sum_probs=334.1
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHH--------
Q 000098 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2256)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~-------- 1118 (2256)
+.++.+.++-..+..++..+++|+++.|.+|++.|++.... |........++ ..+.+.++|-.|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~iL--~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTIL--EFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 34444555667899999999999999999999999877522 22222222222 2345666666544
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcC---------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000098 1119 DIWDRYGYDFGTDY-SGLFKALSH---------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2256)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~ll~~l~~---------~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 1187 (2256)
..|..++.+-+..+ ..+++++.+ .+..++.+.+++++.++. .||+.|+..+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 35665554444445 666765531 357899999999999986 4899999888888876421
Q ss_pred CCCcchhHHHHHHHHHhhhhhccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccC
Q 000098 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2256)
Q Consensus 1188 ~~~~~~R~~~~~aL~~l~~~~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~ 1267 (2256)
+...+..+...|..+.+-+.+-... +...+++..++.. +.. .++.+++.+..+|.. .
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~~~--------~l~~~r~~~lk~~--------L~~----~~~~Il~ll~~iL~~-~ 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFSSG--------QITQVKAKHLKDS--------MCN----EFSQIFQLCQFVMEN-S 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSHHH--------HBCHHHHHHHHHH--------HHH----TCHHHHHHHHHHHHH-C
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcccc--------cccHHHHHHHHHH--------HHH----HHHHHHHHHHHHhcc-c
Confidence 1234556666666665532110000 0000111111211 121 256667777777764 2
Q ss_pred CChhhhhhhhhHHHHHHHHHHhhhccCCcchHHHHHHH-HHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHH
Q 000098 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL 1346 (2256)
Q Consensus 1268 ~~~~~~~~vr~~av~~L~~La~~l~~~~~~i~~il~~L-l~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L 1346 (2256)
.. ..+...++..++....+++.+.-.-..+++.+ ...| +++..|.++++||..++..-.+...+.+..+++.+
T Consensus 219 ~~----~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 QN----APLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp CC----HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 21 24556677777777776543210001245555 3455 45678999999999988753222333333333221
Q ss_pred h--------cCCCHHHH--------HHHHHHHHHHHhhhCcccch--------hh---cHHHHHHHHHhCCCCHHHHHHH
Q 000098 1347 M--------KSDKYGER--------RGAAFGLAGVVKGFGISSLK--------KY---GIAATLREGLADRNSAKRREGA 1399 (2256)
Q Consensus 1347 ~--------~~~~~~vR--------~~Aa~~L~~lv~~~g~~~~~--------~~---~il~~L~~~l~~~~~~~~Re~a 1399 (2256)
. ...+.... ..-..+++.+....|..... .. ..+..+..... ..+...-+.+
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~-~~d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE-VEETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 1 01011000 01223344333332211110 00 12222333323 3366666677
Q ss_pred HHHHHHHHHHhc-------------------------cCchHhHHHHHHHHHHHcCCCc---------------------
Q 000098 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQV--------------------- 1433 (2256)
Q Consensus 1400 l~al~~L~~~l~-------------------------~~~~pyv~~llp~ll~~l~D~~--------------------- 1433 (2256)
+..|..+.+.+- ..+.|++.++...++..+.-|+
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 777777766532 0156667777777766654211
Q ss_pred -HHHHHHHHHHHHHHHhhhhHhh-HHhHHHHHHHhcc--CCChhHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHhh
Q 000098 1434 -VAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2256)
Q Consensus 1434 -~~VR~aa~~al~~l~~~l~~~~-v~~ilp~Ll~~L~--~~~w~~R~~a~~~Lg~la~~~p~-~l~~~L~~Ivp~L~~~L 1508 (2256)
-..++...+++..+. ++.+.. ...+++.+-+.+. ..+|..+.+.+.++|+|+.+..+ .-..+++.+++.|+.+.
T Consensus 452 ~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 124444455554443 333333 3555666655554 35799999999999999976654 45678999999999888
Q ss_pred cCC-----CHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHH
Q 000098 1509 TDT-----HPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2256)
Q Consensus 1509 ~D~-----~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2256)
..+ .+.|+...++.++++.+++... .++.++..++
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~-------------------------------------- 572 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLF-------------------------------------- 572 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH--------------------------------------
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHH--------------------------------------
Confidence 654 3557777788999988876531 2344444444
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhhcCC------CCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-
Q 000098 1582 HRGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2256)
Q Consensus 1582 ~~~L~d~~~~vR~~a~~~l~~L~~~l~~------~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~- 1654 (2256)
+++.+.++.++.+||.++..+|+-+.. +....||++.++..+.....+-.++-......|+|.++...|.+.
T Consensus 573 -~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 573 -EFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp -HHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred -HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 444455556677777777777764322 123457888888888888888788888889999999999887642
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--cHhHHHHHHHHHHHhccCCCHHHHH--HHHHHHHHhHhhhChh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVRD--GYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~--g~~~l~~ll~~ll~~l~~~~~~vR~--~al~~l~~La~~~g~~ 1730 (2256)
.+.++..|+..+.. .+..++... +.+ .+.+++ .++. ..+.+...+|...|..
T Consensus 652 ~~~~i~~Lm~~~~~------------~w~~l~~~~~~~~~-----------~~~d~~-~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 652 QEHLIEKYMLLPNQ------------VWDSIIQQATKNVD-----------ILKDPE-TVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp HHHHHHHHTHHHHH------------HHHHHHHHHHHCGG-----------GGGCHH-HHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHhhcCch-----------hccChH-HHHHHHHHHhhhHHHHhhcchh
Confidence 23334333332221 011111100 111 011111 0111 2344667888999999
Q ss_pred HHHHHHHHHHHHHH
Q 000098 1731 FQNYLQQVLPAILD 1744 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~ 1744 (2256)
|.+++..+.|-+++
T Consensus 708 f~~~~~~i~~~~l~ 721 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLN 721 (1073)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887664
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-14 Score=185.47 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=260.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHH
Q 000098 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2256)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2256)
+|.+++.++++++.+|..|+.+|..+...-.++.++.++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 677888888999999999999999876532222221100 0 0025666
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---c-
Q 000098 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N- 1654 (2256)
Q Consensus 1581 L~~~L~d~-~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~- 1654 (2256)
+.+.+.+. ++.+|..++.++.+++.. ++...... -...+|.+..++.++++.+|..|+.+|+.++...... .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777766 788999999999988862 21111111 2468999999999999999999999999998632110 1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc----HhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g----~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
-..++|.+++.+.++.+..+|..++.+++.++...+ ......++|.++..+.+.++.+|..++.+++.++....+.
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 124788888888876778899999999999986441 2244788999999999999999999999999887643221
Q ss_pred HHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 000098 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2256)
Q Consensus 1731 f~~yl-~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~ 1809 (2256)
..... ..++|.++..+.++++.+|..++.++..+......
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 11111 13455555555555555555555555444221100
Q ss_pred CccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHH-HHHHH
Q 000098 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2256)
Q Consensus 1810 ~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l-~~Ll~ 1888 (2256)
..+.+.+ ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000000 01344444455566667777777777777665555444443 24556
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-----chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh-----
Q 000098 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2256)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~----- 1958 (2256)
.++..+.++++.+|..|+.+|+.++...... .-..++|.|.+.+.++++.+|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 6666667889999999999999998764332 124688899999988899999999999998886543211
Q ss_pred -hHhhHhhH-----HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1959 -l~~~l~~l-----i~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
..+|...+ ++.+.....+++.+|++.|..++..+.
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12344333 566666677778888888877766654
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-14 Score=183.30 Aligned_cols=380 Identities=13% Similarity=0.076 Sum_probs=270.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hccCchHhHH--HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHhhhhHh-
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 1454 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~-l~~~~~pyv~--~llp~ll~~l~D~-~~~VR~aa~~al~~l~~~l~~~- 1454 (2256)
++.+.+.+.++ ++..|+.|+.++..++.. .......++. .++|.++..+.++ ++.+|..+.+++..++...+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56666677655 788999999988887652 2223344444 5899999999888 8999999999999987643221
Q ss_pred -hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhh
Q 000098 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.+ ...+|.+++.+.++++.+|..|+.+|+.++...+......+ ..++|.++.++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 11 45899999999999999999999999999987654322222 3688999999985 7899999999999999965
Q ss_pred c-Cc---hhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccC--CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2256)
Q Consensus 1530 i-~~---~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~--~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~ 1602 (2256)
. .. ..+..++|.|...+.+++..++ .++..+........ ...-....++|.+...+.+.++.+|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 11 2347889999999998887776 35555554211100 0000113467888899999999999999999999
Q ss_pred HhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC---ch-HHHHHHHHHHhhcCCCHHHHHH
Q 000098 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2256)
Q Consensus 1603 L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~-~~lip~Ll~~L~~~~~~~~R~~ 1677 (2256)
++.. ......... ..+++.+..++.++++.+|..++.+|+.++....+. .. ..++|.+++.+.+ .+..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT-AEFRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHH
Confidence 9862 211111112 258899999999999999999999999998522111 11 3688889888886 46779999
Q ss_pred HHHHHHHHHHHhcHhHH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh-------HHHHHHHH-----HH
Q 000098 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-------FQNYLQQV-----LP 1740 (2256)
Q Consensus 1678 aa~~L~~i~~~~g~~~l-----~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~-------f~~yl~~i-----lp 1740 (2256)
++.+++.++.....+.. ..++|.++..+.+.++.+|..++.++..++...+.. ..+|...+ ++
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 417 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLD 417 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHH
Confidence 99999999876443322 358899999999999999999999999888643321 11333333 34
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1741 AILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1741 ~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.+...+.+++..+++.|..++..
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444455555555544443
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.5e-13 Score=183.21 Aligned_cols=505 Identities=14% Similarity=0.080 Sum_probs=320.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccc--chhhcH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGI 1379 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~--~~~~~i 1379 (2256)
++.++..|.++++++|.+++..+...-.. .-....++.|+..|. +++..+|..|+.+|..+........ .....+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~--~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH--HHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56778888899988988777766543211 112456777776555 5678999999999999987432111 111257
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--h
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~ 1455 (2256)
++.|.+.+.+..++..|..|..++..++..... ...+ ...+|.++..+.++++.+|..|..++..++...+.. .
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 788888887655899999999988887653211 1111 247899999999999999999999999998654321 1
Q ss_pred H--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHH-HHHHHHHHHHHHHhhcC
Q 000098 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPK-VQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~-VR~aA~~aL~~l~~~i~ 1531 (2256)
+ ...+|.+++.+.+.+++++..++.+|..++...++.... .-...++.|+.++.+.+++ ++..++.+|..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 367899999999999999999999999888654432111 1125678888888876655 45577888888774211
Q ss_pred chhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000098 1532 NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1532 ~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
+ ...++ -..++|.+...+.+.+..++..++.++.+++......
T Consensus 352 ~--~~~i~----------------------------------~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~- 394 (780)
T 2z6g_A 352 N--KPAIV----------------------------------EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ- 394 (780)
T ss_dssp H--HHHHH----------------------------------HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred H--HHHHH----------------------------------HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-
Confidence 1 00000 0123455555566666677777777888777632111
Q ss_pred cchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHH
Q 000098 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVL 1686 (2256)
Q Consensus 1612 ~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~-~~~~R~~aa~~L~~i~ 1686 (2256)
.....+++.|..++.++++.+|..++.+|+.++..-.+. .-...++.|++.|.+.. ...+|..++.+|+.+.
T Consensus 395 ---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 395 ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp ---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 123457778888888888888888888888876521110 01246777777776532 3357888888888775
Q ss_pred HHhcHh-----H--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCCC-------
Q 000098 1687 AALGTV-----Y--FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADEN------- 1750 (2256)
Q Consensus 1687 ~~~g~~-----~--l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~~------- 1750 (2256)
...+.. . -...+|.++..+.+++ +.+|..++.+++.++...... .... ..++|.++..+.+.+
T Consensus 472 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a 550 (780)
T 2z6g_A 472 SRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRT 550 (780)
T ss_dssp SSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence 432221 1 1346788888888775 489999999999887532211 1111 245666666664422
Q ss_pred ---------------HHHHHHHHHHHHHHHHHhhc-cch--hchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCcc
Q 000098 1751 ---------------ESVRDAALGAGHVLVEHYAT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2256)
Q Consensus 1751 ---------------~~VR~~Al~al~~iv~~~~~-~~~--~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~ 1812 (2256)
+.++..++.++..+...-.. ..+ ...+|.|.+.+.+.+..+|..++..++.+...
T Consensus 551 a~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~------- 623 (780)
T 2z6g_A 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------- 623 (780)
T ss_dssp C------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-------
T ss_pred hhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-------
Confidence 45666777777765321000 001 23688899999999999999999988887410
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH
Q 000098 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2256)
Q Consensus 1813 ~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~ 1880 (2256)
. .....+.+ . ..+..|.....+.+..||..|..++..+..+.+..++
T Consensus 624 -------------~-~~~~~i~~-~------g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~ 670 (780)
T 2z6g_A 624 -------------K-EAAEAIEA-E------GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 670 (780)
T ss_dssp -------------H-HHHHHHHH-T------TCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHH
T ss_pred -------------H-HHHHHHHH-C------CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhh
Confidence 0 01111111 1 1345566667888999999999999999887764443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-10 Score=166.49 Aligned_cols=664 Identities=10% Similarity=0.085 Sum_probs=383.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh----------------hhHhhh
Q 000098 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----------------QQLSQC 1496 (2256)
Q Consensus 1433 ~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p----------------~~l~~~ 1496 (2256)
+..||.....++..++...-+..++.+++.+++.+. .+...+..++.+|..+.+... +.+...
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~ 191 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 468899999999999887555678889999998886 444567777888887775422 234556
Q ss_pred hhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchhH--HhHHHHHHhhhCCCChhHH-HHHHHHHhcc-c-ccCCC
Q 000098 1497 LPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTT-F-VNTVD 1570 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~-~-~~~~~ 1570 (2256)
++.+++.+..++.+ .++.++..+.+++..+..++..+.+ ..+++.+.+.+.. ++.++ .+++.+.... . .....
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~-~~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT-SPDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH-SHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC-CHhHHHHHHHHHHHHHhCCCCcch
Confidence 77888888888764 4578999999999998887764432 3566655532211 33444 3444443310 0 11110
Q ss_pred ---hhhHhh----HHHHHHH-h----------h---cCCCHHHHHHHHHHHHHHhh----hcCCCCcchhhhhhhhHHHH
Q 000098 1571 ---APSLAL----LVPIVHR-G----------L---RERSAETKKKAAQIVGNMCS----LVTEPKDMIPYIGLLLPEVK 1625 (2256)
Q Consensus 1571 ---~~~l~~----i~p~L~~-~----------L---~d~~~~vR~~a~~~l~~L~~----~l~~~~~l~~~l~~Ll~~L~ 1625 (2256)
...+.. ++..+.. . + .+.+.+.....+..+..+.+ .+..+....+++..+++.+.
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll 350 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 011111 1221211 0 0 12234444455555544432 12222234567777888888
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhh--Cc---C----chHHHHHHHHHHhhcC---------C---------C---HHHH
Q 000098 1626 KVLVDPIPEVRSVAARAIGSLIRGM--GE---E----NFPDLVSWLLDALKSD---------N---------S---NVER 1675 (2256)
Q Consensus 1626 ~~L~d~~~~VR~~a~~aL~~L~~~~--g~---~----~~~~lip~Ll~~L~~~---------~---------~---~~~R 1675 (2256)
.+...++.++...+...+..+++.+ .+ . ++..+++.++..+.-. + + ...|
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~ 430 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHH
Confidence 8777888999999999999888743 11 1 3344555555544211 0 1 0234
Q ss_pred HHHHHHHHHHHHHhcHhHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhHhhhChhH-HHHHHHHHHHHHHhcC-----
Q 000098 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA----- 1747 (2256)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~--~~~~~vR~~al~~l~~La~~~g~~f-~~yl~~ilp~Ll~~L~----- 1747 (2256)
..+...+..++...+.+.+..+++.+-+.+. +.+|..|++++.++|.++..++..- .++++.+++.+.....
T Consensus 431 ~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~ 510 (1049)
T 3m1i_C 431 KSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGK 510 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccc
Confidence 4555666666655555556666666666654 4689999999999999988776543 3567777777766432
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchH
Q 000098 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2256)
Q Consensus 1748 d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e 1827 (2256)
|+.+.+|..++.+++.+..-+...
T Consensus 511 ~~~~~v~~~~~~~lgry~~~~~~~-------------------------------------------------------- 534 (1049)
T 3m1i_C 511 DNKAVVASDIMYVVGQYPRFLKAH-------------------------------------------------------- 534 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHC--------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHhH--------------------------------------------------------
Confidence 123334433444433322111100
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH--------HHHHHHHHHHHHHhcCCCH
Q 000098 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--------EIMPVLMNTLISSLASSSS 1899 (2256)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~--------~~l~~Ll~~L~~~L~~~~~ 1899 (2256)
.+....++..++..+.|.+..|+..|..++..++..++..+. ++++.+++.+...+..-+.
T Consensus 535 -----------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~ 603 (1049)
T 3m1i_C 535 -----------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP 603 (1049)
T ss_dssp -----------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH
T ss_pred -----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 112233455555556677778888888888888887766664 8889998888877777777
Q ss_pred HHHHHHHHHHHHHHHhhCc-c----chhchHHHHhhhcC--------CC----Chhh-H--HhHHHHHHHHHHhhChhhh
Q 000098 1900 ERRQVAGRALGELVRKLGE-R----VLPSIIPILSRGLK--------DP----SASR-R--QGVCIGLSEVMASAGKSQL 1959 (2256)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~-~----~l~~llp~L~~~l~--------d~----~~~v-R--~~a~~aL~eii~~~~~~~l 1959 (2256)
..+....++++.++...+. . ++..+++.+.+.+. ++ ++.. + ...+.++..++...|.. +
T Consensus 604 ~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~-f 682 (1049)
T 3m1i_C 604 QQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD-F 682 (1049)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG-G
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH-H
Confidence 7778888999999988773 1 34444444432221 00 1111 1 23455566666666643 3
Q ss_pred HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch--------hhHHhHHHHHHHhhccCCchHHHHHHHHHHHhh
Q 000098 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM--------QAIDEIVPTLLHALEDDQTSDTALDGLKQILSV 2031 (2256)
Q Consensus 1960 ~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~--------~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~ 2031 (2256)
.|+.+.++..+...+.. ....+.......|. .....+.|.+++.++.-.... ..+..+.
T Consensus 683 ~p~~~~i~~~~l~~~~~--------~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~---~~l~~~~-- 749 (1049)
T 3m1i_C 683 YPQLGHIYYNMLQLYRA--------VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA---RNLDDVV-- 749 (1049)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHH--
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHH--
Confidence 34444443332211110 00111111111121 123345555554443210000 0000111
Q ss_pred hcccchhhhh----hhhhcC-c--hhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhh-----C--CCCHHHHHHHHHH
Q 000098 2032 RTTAVLPHIL----PKLVHL-P--LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM-----G--DDDMDVQSLAKEA 2097 (2256)
Q Consensus 2032 ~~~~~lp~li----~~L~~~-p--~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l-----~--~~~~~vr~~a~~a 2097 (2256)
..++|.++ ..+... + ........++.++..+|+.+.++++.+++.++... . ++.+++|......
T Consensus 750 --~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~l 827 (1049)
T 3m1i_C 750 --KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKL 827 (1049)
T ss_dssp --HHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHH
Confidence 01112221 111110 0 01235677888888889999999999998888764 2 3568999999999
Q ss_pred HHHHHhhcch-------hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchh----h-----hhhhHHHHHHHHHHH
Q 000098 2098 AETVTLVIDE-------EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL----Y-----LVDEAPNMISTLIVL 2161 (2256)
Q Consensus 2098 l~~l~~~~~~-------~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~----~-----~~~y~~~il~~L~~~ 2161 (2256)
+.+++..+.. ..+..+++..+..+++.++.+..+++..+..+...... + +..|...++..++..
T Consensus 828 l~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~ 907 (1049)
T 3m1i_C 828 LKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFV 907 (1049)
T ss_dssp HHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976532 22567778888889999999999999999988765331 1 344666777777777
Q ss_pred cCCCC-hHHHHHHHHHHHHhh
Q 000098 2162 LSDSD-STTVAAAWEALSRVV 2181 (2256)
Q Consensus 2162 l~D~d-~~Vr~~A~~aL~~l~ 2181 (2256)
+.|.. ...-+.-+..|..++
T Consensus 908 l~~~~h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 908 LTDSDHKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HHSTTCGGGHHHHHHHHHHHH
T ss_pred HhcchHhhhHHHHHHHHHHHH
Confidence 66553 334444445555543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-13 Score=180.35 Aligned_cols=388 Identities=14% Similarity=0.111 Sum_probs=280.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~---~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~ 1414 (2256)
.++.++..|. ++++.+|..|+.+|..++...... .+....+++.+.+.+.+.+++..|..|+.+++.++.......
T Consensus 75 ~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3666667664 446889999999999988755311 122336889999999887569999999999999987432211
Q ss_pred hHhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhc-cCCChhHHHHHHHHHHHHHhh
Q 000098 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2256)
Q Consensus 1415 ~pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~R~~a~~~Lg~la~~ 1488 (2256)
...+. ..+|.++..+.++++.||+.|.+++..++...+.. .+ ...+|.++..+ .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 48899999999999999999999999998653321 12 24789999999 578999999999999999987
Q ss_pred ChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC
Q 000098 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2256)
Q Consensus 1489 ~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~ 1568 (2256)
.|.........++|.++.++.+.++.|+..|+++|..++.... ...+.++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~----------------------------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAVI----------------------------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHHH-----------------------------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHH-----------------------------
Confidence 6544334557899999999999999999999999999985321 1111100
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 000098 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2256)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~-~~~VR~~a~~aL~~L 1646 (2256)
-..++|.+...+.+.++.++..++.++++++. +........+ ..++|.|..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 01245667777777788888899999999886 2211111111 35788999999998 999999999999999
Q ss_pred HHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhH---H--HHHHHHHHHhccCCCHHHHHHHH
Q 000098 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRDGYL 1717 (2256)
Q Consensus 1647 ~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~---l--~~ll~~ll~~l~~~~~~vR~~al 1717 (2256)
+....+. .-..++|.|++.|.+. +..+|..++.+++.++.....+. + ...++.++..+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632111 1125678888888874 67799999999999987644442 2 36788999999999999999999
Q ss_pred HHHHHhHhhhCh----------hHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1718 TLFKYLPRSLGV----------QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1718 ~~l~~La~~~g~----------~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
.++..+....+. .+...+. ..++.+.....++++.++..|...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999988865533 1222222 2355666667777777877776665544
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-13 Score=183.40 Aligned_cols=504 Identities=12% Similarity=0.076 Sum_probs=324.6
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hhhhhhH
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKI 1500 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~~L~~I 1500 (2256)
+|.++..+.+++..+|.++...+...-.. .-....+|.++..+.+.+..+|..|+.+|+.++...+... ....+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56677778888888988877776643211 1125678888888888999999999999999987543221 1123578
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHH
Q 000098 1501 VPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2256)
Q Consensus 1501 vp~L~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2256)
++.|+..|.+ .++.+|..|+.+|..++..-.+ ...+ . -...+|
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i----------------------~------------~~g~I~ 237 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAI----------------------F------------KSGGIP 237 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHH----------------------H------------HTTHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHH----------------------H------------HcCCHH
Confidence 8999998874 4899999999999998753110 0000 0 012567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----c
Q 000098 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----N 1654 (2256)
Q Consensus 1580 ~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~ 1654 (2256)
.+.+.+++.++.+|..|+.++.+++.. .......+ -...++.+..++.++++.++..+..++..++....+. .
T Consensus 238 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~--~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 238 ALVNMLGSPVDSVLFHAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC--ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 777888888889999999999999873 21111122 2468899999999999999999999999877421100 1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH-hH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhH
Q 000098 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2256)
Q Consensus 1655 ~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~--l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f 1731 (2256)
-...++.|+..+++......+..++..+..++..-.. .. -...++.++..+.+.+..++..++.++..++......
T Consensus 316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~- 394 (780)
T 2z6g_A 316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ- 394 (780)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-
Confidence 1246788888888765554555555556655531111 11 1356788999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc--c--hhchHHHHHhhcCC-CCH-HHHHHHHHHHHHHHHh
Q 000098 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--S--LPLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1732 ~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~--~--~~~llp~L~~~l~d-~~~-~iR~~sv~llg~ll~~ 1805 (2256)
.....++|.++..+.++++.+|..|+.++..+...-... . -...+|.|.+.+.+ .++ .+|..++.+++.+...
T Consensus 395 -~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 395 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred -hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 123568999999999999999999999988775321100 0 01256677766654 333 8999999999887310
Q ss_pred hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcChhHHH----
Q 000098 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLK---- 1880 (2256)
Q Consensus 1806 ~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~-~~Vr~aA~~~l~~l~~~~~~~l~---- 1880 (2256)
+.+ .+.....+... ..++.|...+.+.. ..+|..++.+++.++.+.. ...
T Consensus 474 --------------~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~ 528 (780)
T 2z6g_A 474 --------------HQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE 528 (780)
T ss_dssp --------------STT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH
T ss_pred --------------Cch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 000 11111122111 13444555554444 5899999999998876322 111
Q ss_pred -HHHHHHHHHHHHH----------------hc--CCCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCCChh
Q 000098 1881 -EIMPVLMNTLISS----------------LA--SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSAS 1938 (2256)
Q Consensus 1881 -~~l~~Ll~~L~~~----------------L~--~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~~~~ 1938 (2256)
..+|.|+..+... +. ...++++..++.+|+.++...... .-...+|.|.+.+.++++.
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 608 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN 608 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHH
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHH
Confidence 1344444443221 00 012456777888888875311000 1245688888999888999
Q ss_pred hHHhHHHHHHHHHHhhChhhhHhhH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000098 1939 RRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2256)
Q Consensus 1939 vR~~a~~aL~eii~~~~~~~l~~~l--~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~ 1996 (2256)
++..++.+|+.+... + .....+ ...++.+...+.+++++||+.|..++..+...-
T Consensus 609 v~~~a~~aL~~L~~~--~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 609 IQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcC--H-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999998887532 1 122222 236788888899999999999999999987643
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=183.74 Aligned_cols=381 Identities=13% Similarity=0.097 Sum_probs=285.1
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh---hH--HhHHHHHHHhccCC-ChhHHHHHHHHHHHHHhhChhhH
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---~v--~~ilp~Ll~~L~~~-~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..+|.++..+.++++.+|..|..++..++...... .+ ..++|.+++.+.+. ++.+|..|+.+|+.++...++..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 44677777888889999999999999886543211 12 35799999999986 89999999999999998765443
Q ss_pred hhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hh-H-HhHHHHHHhhhCCCChhHH-HHHHHHHhcccc-
Q 000098 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFV- 1566 (2256)
Q Consensus 1494 ~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~-i-~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~- 1566 (2256)
.... ..++|.++.++.++++.||..|+++|+.++..-.. .. + ...+|.|+..+.+++..++ .++.+|......
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 2221 47889999999999999999999999999864211 11 1 4688999999988777765 455555542211
Q ss_pred -cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1567 -~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
..........++|.+.+.+.+.++.++..++.++++++.. .+....... ..+++.|..++.++++.+|..++.+|+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 2223345567889999999999999999999999999862 222222222 268899999999999999999999999
Q ss_pred HHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH-HHHHHHHHHhccCCCHHHHHHH
Q 000098 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGY 1716 (2256)
Q Consensus 1645 ~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l-~~ll~~ll~~l~~~~~~vR~~a 1716 (2256)
.++...+.. .-..++|.++..|.+. +..+|..++.+++.++.+.... .+ ..++|.++..+.++++.+|..+
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998532211 1135888898888874 6779999999999987533221 12 4678889999988999999999
Q ss_pred HHHHHHhHhhhCh--hHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----------chh-----chH
Q 000098 1717 LTLFKYLPRSLGV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----LLL 1777 (2256)
Q Consensus 1717 l~~l~~La~~~g~--~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----------~~~-----~ll 1777 (2256)
+.+++.++...++ ....++- .++|.++..+.++++.+|..++.++..++...... ... ..+
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 9999999987654 4444443 48999999999999999999999998887643321 011 136
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1778 PAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1778 p~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
+.+.....+++..++..+..++..+.
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67777778889999999988887763
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-13 Score=178.92 Aligned_cols=381 Identities=14% Similarity=0.106 Sum_probs=284.2
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhChhhH
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
.-+|.++..+.++++.+|..|..++..++..... ..+ ..++|.+++.+.+.+ +.+|..|+.+|+.++...++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3477788888888999999999999988765431 112 367999999998876 9999999999999998766543
Q ss_pred hhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhh-CCCChhHH-HHHHHHHhcccc
Q 000098 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 1566 (2256)
Q Consensus 1494 ~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l-~d~~~~vr-~al~~L~~~~~~ 1566 (2256)
.... ...+|.++.++.++++.||..|+++|+.++..-.. ..+ ...+|.|+..+ .+++..++ .++.+|......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3222 26899999999999999999999999999864221 112 35788899998 55666664 455555542211
Q ss_pred -cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1567 -~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
..........++|.+.+.+.+.++.++..++.++++++.. ........ -..+++.|..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2233344567899999999999999999999999999852 21111111 2368899999999999999999999999
Q ss_pred HHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--H--HHHHHHHHHHhccCCCHHHHHHH
Q 000098 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y--FEHILPDIIRNCSHQRASVRDGY 1716 (2256)
Q Consensus 1645 ~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~--l~~ll~~ll~~l~~~~~~vR~~a 1716 (2256)
.++...... .-..++|.|...|.+..+..+|..++.+++.++...... . -..++|.++..+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998632211 113578999998887547789999999999988632221 1 13678999999988899999999
Q ss_pred HHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----------chh-----chHHH
Q 000098 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----LLLPA 1779 (2256)
Q Consensus 1717 l~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----------~~~-----~llp~ 1779 (2256)
+.+++.++....+....++ ..+++.++..+.++++.++..++.++..++...... ... ..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987666666666 368999999999999999999999999887643220 011 13455
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1780 VEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1780 L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
+.....+++..++..+..++..+
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 66667788889999888888776
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-16 Score=184.31 Aligned_cols=254 Identities=10% Similarity=0.011 Sum_probs=184.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHHHHhhcCCCCCCCh--HhHH
Q 000098 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY--SGLF 1136 (2256)
Q Consensus 1059 ~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~~~~~~~~--~~ll 1136 (2256)
...|+.++++|.|++||+|..+|+++.+. ++.+.+.. ...+.| ++.++.|.+ +++.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~------hG~GAGR~---~~~N~D-------------LAvRLLCVLALDRFG 233 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSE------IDNGGDIQ---IRVDSK-------------LFSKIYEILVTDKFN 233 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHH------CC----CC---CCCCTT-------------HHHHHHHHHHHBCCB
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHH------hccCCcee---ccccHH-------------HHHHHHHHHHhcccc
Confidence 45688999999999999999999988754 33222221 111112 222333333 5666
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccCChhH
Q 000098 1137 KALSH-SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPV 1215 (2256)
Q Consensus 1137 ~~l~~-~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~~~~~ 1215 (2256)
+|+++ ..++||+++||+||.+ ...|+.. .++..+.. . ...+.|++|+|+.++|+|+.+++.. .+.
T Consensus 234 DYVSDqVVAPVRETaAQtLGaL-~hLp~e~-~IL~qLV~----~------l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~ 299 (800)
T 3oc3_A 234 DFVDDRTVAPVRDAAAYLLSRI-YPLIGPN-DIIEQLVG----F------LDSGDWQVQFSGLIALGYLKEFVED--KDG 299 (800)
T ss_dssp BCSSSSCBCHHHHHHHHHHHHH-TTTSCSC-CHHHHHTT----G------GGCSCHHHHHHHHHHHHHTGGGCCC--HHH
T ss_pred ccccCeeeeehHHHHHHHHHHH-HhCChhH-HHHHHHHh----h------cCCCCeeehhhhHHHHHHHHHHHHH--HHH
Confidence 77874 5899999999999999 7666552 33333331 1 1246799999999999999655543 677
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCC
Q 000098 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD 1295 (2256)
Q Consensus 1216 l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~ 1295 (2256)
+++.++ .||+|.+++||..|.++..-+. .++.++.++..+|.+|.+. .| -. .....+|.+|+.++.+-....
T Consensus 300 Vv~aVL-~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~L-DD-LS--ASTgSVMdLLAkL~s~p~~a~ 371 (800)
T 3oc3_A 300 LCRKLV-SLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESE-EL-IS--VSKTSNLSLLTKIYRENPELS 371 (800)
T ss_dssp HHHHHH-HHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTC-CS-CC--TTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHH-hhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhh-cc-cc--hhhHHHHHHHHHHHcCCcccc
Confidence 777764 7999999999999998877666 5677899999999999874 22 12 356788999999998743211
Q ss_pred cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000098 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLA 1363 (2256)
Q Consensus 1296 ~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~ 1363 (2256)
.-+.++++|...+.++...||.++.+++..+. ....+.-+++.+.-+++..+|..+...+.
T Consensus 372 -~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 -IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11267899999999999999999999887665 45677788888888888888887777664
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-10 Score=156.02 Aligned_cols=587 Identities=11% Similarity=0.067 Sum_probs=352.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhccC----ChhHhH
Q 000098 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK----DLPVIM 1217 (2256)
Q Consensus 1142 ~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~~----~~~~l~ 1217 (2256)
+++..|+.|-+-|.. .+..|+.|......|... ...+.++|..++..|+.....++.+ +...+.
T Consensus 20 sd~~~r~~A~~~L~~-~q~sp~aw~~~~~iL~~~-----------~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr 87 (980)
T 3ibv_A 20 VGPIIKQQATDFIGS-LRSSSTGWKICHEIFSEK-----------TKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR 87 (980)
T ss_dssp SCHHHHHHHHHHHHH-HHHSTTHHHHHHHHTTCT-----------TTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HHcChhHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence 378888888777754 456688887666555321 1114689999999999888766666 555555
Q ss_pred HHHHHh--hcC--CCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhcc
Q 000098 1218 TFLISR--ALA--DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293 (2256)
Q Consensus 1218 ~~lv~~--~l~--D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~ 1293 (2256)
++++.. ... +....||.....+...++....++.|+.+++-+...+..... +......+..+..+.+.+..
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~-----~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ-----SEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh-----hHHHHHHHHHHHHhHHHHHh
Confidence 555421 121 346789999999988888887788999999988887764211 01122333444444455422
Q ss_pred CC-c-------c------------hHHHHHHHHHHc----CCCCHHHHHHHHHhhHHhHHhhcCch---HHHHHHHHHHH
Q 000098 1294 DD-P-------K------------VHAVVDKLLDVL----NTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQL 1346 (2256)
Q Consensus 1294 ~~-~-------~------------i~~il~~Ll~~L----~~~~~~Vq~~~~~~L~~lv~~~~~~~---~~~l~~Ll~~L 1346 (2256)
.. + + ++.+++..+..| ..+++.++..+.+|+...+.-..... ..+++.++..|
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence 11 0 0 122233333333 23566777778888887776432111 46676667555
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHH--HHHH----hCCCCHHHHHHHHHHHHHHHHHhc---c-----
Q 000098 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL--REGL----ADRNSAKRREGALLAFECLCEKLG---R----- 1412 (2256)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L--~~~l----~~~~~~~~Re~al~al~~L~~~l~---~----- 1412 (2256)
. +...|..|+.||..++..... .-....++..+ .+.+ .++.|.+.+++....+..+++.+- +
T Consensus 243 ~---~~~~r~~A~ecL~ei~~k~~~-~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 243 Q---IEELRCAACETMTEIVNKKMK-PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp T---SHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred C---ChHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3 368999999999999876432 11112233222 1112 113466666655555544443311 0
Q ss_pred ------CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh---H-----hhH----HhHHHHHHHhcc---CCC
Q 000098 1413 ------LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A-----QGV----KLVLPSLLKGLE---DKA 1471 (2256)
Q Consensus 1413 ------~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~---~-----~~v----~~ilp~Ll~~L~---~~~ 1471 (2256)
...+++..++|.++.++++++.+|-..+..-+..+...+. . ... ..+++.++..+. +.+
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 1126777899999999999999888777666665543321 1 112 344444444442 223
Q ss_pred hh-------------HHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHhhc---CCCHHHHHHHHHHHHHHHhhcCchh
Q 000098 1472 WR-------------TKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPE 1534 (2256)
Q Consensus 1472 w~-------------~R~~a~~~Lg~la~~~p~~l~~~L~-~Ivp~L~~~L~---D~~~~VR~aA~~aL~~l~~~i~~~~ 1534 (2256)
|. -|+....++..++-..|+....++- .+.+.+.+.+. +.++..++++..+|+.+++.+++..
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~ 478 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPD 478 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGG
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 31 3444334444444445554333111 33344444442 3457889999999999998776421
Q ss_pred HHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhhcCC
Q 000098 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-----ERSAETKKKAAQIVGNMCSLVTE 1609 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~-----d~~~~vR~~a~~~l~~L~~~l~~ 1609 (2256)
.. . ....+.++.+++.+.+.+. +..+.+|..++.+++..++.+..
T Consensus 479 ~~-----------------------------~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~ 528 (980)
T 3ibv_A 479 AF-----------------------------F-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY 528 (980)
T ss_dssp GT-----------------------------B-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT
T ss_pred cc-----------------------------c-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 10 0 0001122234444444433 56789999999999999987654
Q ss_pred CCcchhhhhhhhHHHHH--hhcCCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcC----C----------
Q 000098 1610 PKDMIPYIGLLLPEVKK--VLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD----N---------- 1670 (2256)
Q Consensus 1610 ~~~l~~~l~~Ll~~L~~--~L~d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~----~---------- 1670 (2256)
.. .|++.+++.+.. .+.++++.||..|+.++..+++..+.. |.+.++..+...|.-. .
T Consensus 529 ~~---~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 529 ES---AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp CC---TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred Cc---hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 32 577888888888 888999999999999999999988754 4555665555444421 1
Q ss_pred ------CHHHHHHHHHHHHHHHHHhcH--h----HHHHHHHHHHHhcc----CC----CHHHH-HHHHHHHHHhHhhhCh
Q 000098 1671 ------SNVERSGAAQGLSEVLAALGT--V----YFEHILPDIIRNCS----HQ----RASVR-DGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1671 ------~~~~R~~aa~~L~~i~~~~g~--~----~l~~ll~~ll~~l~----~~----~~~vR-~~al~~l~~La~~~g~ 1729 (2256)
....+.....++|.++...+. + +++.+++.+++.+. .. +...+ ...+.+++.+++.+..
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 122466778889999987652 1 55666666554432 21 11111 2456777888887643
Q ss_pred h------HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhh
Q 000098 1730 Q------FQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG 1783 (2256)
Q Consensus 1730 ~------f~~yl~~ilp~Ll~~L~--d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~ 1783 (2256)
. ....+.++++.++..+. ..+..||+++..++..++..++.. +..++|.+.+.
T Consensus 686 ~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~~ 746 (980)
T 3ibv_A 686 RGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLISI 746 (980)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHHH
Confidence 2 45566778888877665 456899999999999999888876 33355555443
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-13 Score=176.77 Aligned_cols=389 Identities=13% Similarity=0.091 Sum_probs=283.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhhcCC-CHHHHHHHHHHHHHHHHhhCcC
Q 000098 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L~d~-~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
..+|.+...+.+.++.+|..|+..+.++...-.. ..... .-..++|.|..++.++ ++.+|..|+.+|+.++....+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3467778888888899999999999988752111 11111 1246889999999987 8999999999999988632111
Q ss_pred --c--hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH--h--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHh
Q 000098 1654 --N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--V--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2256)
Q Consensus 1654 --~--~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~ 1725 (2256)
. -...+|.|+..|.+ .+..+|..++.+|+.++..... . .-...++.++..+.+.++.+|..++.+++.++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 1 13568888888886 5677999999999998753211 1 124688999999999999999999999999986
Q ss_pred hh-ChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc---cch-hchHHHHHhhcCCCCHHHHHHHHHHHH
Q 000098 1726 SL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL-PLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2256)
Q Consensus 1726 ~~-g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~---~~~-~~llp~L~~~l~d~~~~iR~~sv~llg 1800 (2256)
.. +..-......++|.++..+.++++.+|..++.++..+...... ..+ ..++|.|.+.+.+.+|.+|..++.+++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 54 2222345578899999999999999999999999887642111 011 247888999999999999999999999
Q ss_pred HHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHH
Q 000098 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2256)
Q Consensus 1801 ~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~ 1880 (2256)
.+... .+...+.+.+ ..+++.|...+.+.+..+|..|+.+++.++.+.+....
T Consensus 325 ~l~~~--------------------~~~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 325 NIVTG--------------------NDLQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp HHTTS--------------------CHHHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHcC--------------------CHHHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88410 0011111111 13566677777888899999999999999887766555
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc--c-----chhchHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000098 1881 EIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2256)
Q Consensus 1881 ~~l-~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~--~-----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2256)
.++ ..+++.++..+.++++.+|..|+++|+.++...+. . .-..++|.|...+.++++.+|..++.+|..++.
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444 24556666667788999999999999999986543 2 124578889999988899999999999998886
Q ss_pred hhChhh------hHhhHh-----hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1953 SAGKSQ------LLSFMD-----ELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1953 ~~~~~~------l~~~l~-----~li~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
...... ..+|.. ..++.+.....+++++|++.|..++..++
T Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 543210 112222 24667777778899999998887776654
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-09 Score=151.52 Aligned_cols=545 Identities=12% Similarity=0.074 Sum_probs=308.1
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh----h
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~----~ 1208 (2256)
+.++..+.+++...|+.|.+.|. -.+..|+.|......|... .+.++|..|+..|+..... +
T Consensus 19 e~av~~ly~p~~~~r~~A~~~L~-~~q~sp~aw~~~~~iL~~s-------------~~~~vR~faa~~Lk~~I~~~W~~L 84 (1023)
T 4hat_C 19 DQVVSTFYQGSGVQQKQAQEILT-KFQDNPDAWQKADQILQFS-------------TNPQSKFIALSILDKLITRKWKLL 84 (1023)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH-HHHHCTTGGGGHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHhCCChHHHHHHHHHHH-HHHcCccHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHHhhhhcC
Confidence 55666665666677877777774 4567788888776655321 2348999999999988764 3
Q ss_pred ccCChhHhHHHHHH---hhcCCC-----CHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHH
Q 000098 1209 RTKDLPVIMTFLIS---RALADT-----NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2256)
Q Consensus 1209 ~~~~~~~l~~~lv~---~~l~D~-----~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~a 1280 (2256)
+.++...+.++++. +...++ +..++.....+...++...-++.|+.+++-+...+.. + . ..++.+
T Consensus 85 ~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~--~---~--~~~~~~ 157 (1023)
T 4hat_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS--S---V--NVCENN 157 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT--C---H--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC--C---H--HHHHHH
Confidence 33333334444432 111222 4667777888888888777678899999988887653 1 1 345677
Q ss_pred HHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHH
Q 000098 1281 VIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA 1359 (2256)
Q Consensus 1281 v~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa 1359 (2256)
+..|..|.+.+... ...+ ...-+...-.. +...++.++..+...+.......+...+.
T Consensus 158 L~iL~~L~EEV~~~~~~~l--------------~~~r~~~lk~~-------l~~~~~~I~~ll~~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQM--------------TQAKALHLKNS-------MSKEFEQIFKLCFQVLEQGASSSLIVATL 216 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTS--------------CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccc--------------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77887777664220 0000 00000000000 01113333333334443444557778888
Q ss_pred HHHHHHHhhhCcccchhhcHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHH-h-cc--CchHhHHHHHHHHHHHc----C
Q 000098 1360 FGLAGVVKGFGISSLKKYGIAATLR-EGLADRNSAKRREGALLAFECLCEK-L-GR--LFEPYVIQMLPLLLVAF----S 1430 (2256)
Q Consensus 1360 ~~L~~lv~~~g~~~~~~~~il~~L~-~~l~~~~~~~~Re~al~al~~L~~~-l-~~--~~~pyv~~llp~ll~~l----~ 1430 (2256)
.+++..+.......+...++++.+. ..+. ++..|+.|+.++..+... . ++ .+...+..+++.++..+ -
T Consensus 217 ~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~ 293 (1023)
T 4hat_C 217 ESLLRYLHWIPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1023)
T ss_dssp HHHHHHTTTSCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999887665544457888888 6665 567899988887777641 1 11 12223333333322211 1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHH
Q 000098 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKL 1504 (2256)
Q Consensus 1431 D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l------~~~L~~Ivp~L 1504 (2256)
......+.+ +....+.+...-.+-+.++..+.+.....+ ...+...+..+
T Consensus 294 p~~~~l~~~------------------------~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~L 349 (1023)
T 4hat_C 294 PVTADLKAT------------------------YANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1023)
T ss_dssp CTTCCHHHH------------------------HHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHH
T ss_pred CCcchHHHH------------------------HhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 111111100 000000011111111222222222211111 11111222344
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhcC---------chhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC-CChhhH
Q 000098 1505 TEVLTDTHPKVQSAGQTALQQVGSVIK---------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT-VDAPSL 1574 (2256)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~i~---------~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~-~~~~~l 1574 (2256)
+.+...++.+|-..++.-...+.+.+- .|.+..+++.+++.+.-|.+.. .+.. .+.. .
T Consensus 350 l~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~-----------ive~d~~~~-~ 417 (1023)
T 4hat_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL-----------VVENDEGEI-V 417 (1023)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC-----------EEECTTSCE-E
T ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc-----------cCCCCCccH-H
Confidence 444455566676666666655554321 1334567777777776664210 0000 0000 0
Q ss_pred hhHHHHHHHhhcCCCHHHH-HHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhC
Q 000098 1575 ALLVPIVHRGLRERSAETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMG 1651 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR-~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g 1651 (2256)
.....|.+.... +..-.++..++.+.+ ...++.+++.+.+.+.+ .+|..|+++.-|+|++++++.
T Consensus 418 -------~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-----~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~ 485 (1023)
T 4hat_C 418 -------REFVKESDTIQLYKSEREVLVYLTHLNV-----IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485 (1023)
T ss_dssp -------ECSSCCGGGHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSC
T ss_pred -------HHhccchHHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 000000000000 011145555555322 12344566666666653 689999999999999998775
Q ss_pred cC----chHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHhc--HhHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 000098 1652 EE----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2256)
Q Consensus 1652 ~~----~~~~lip~Ll~~L~~----~~~~~~R~~aa~~L~~i~~~~g--~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~ 1721 (2256)
++ +++.++|.|++.+.. +....+|..++..+|.+.+-+. .+++++++..++..+.++++.+...++.+|.
T Consensus 486 ~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~ 565 (1023)
T 4hat_C 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 43 566778877776653 2233455566677777666543 4578999999999998889999999999999
Q ss_pred HhHhhhChhHH--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 000098 1722 YLPRSLGVQFQ--------NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2256)
Q Consensus 1722 ~La~~~g~~f~--------~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~ 1770 (2256)
.++...+..+. ||++.++..+.....+-.+.-+..+.+++..+++..+.
T Consensus 566 ~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 99998888773 69999998888887766677777888888888876653
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=168.11 Aligned_cols=467 Identities=14% Similarity=0.073 Sum_probs=318.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh--HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY--VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py--v~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
..++.+.+.+.++ ++.+|+.|+.++..++..... .... ...+++.++..+.+ +++.+|..|..++..+...-...
T Consensus 14 g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~-~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 14 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTH-HHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChh-HHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 5677777777765 899999999999999875431 1111 13567788877765 48899999999998776542211
Q ss_pred -hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
.+ ...+|.+++.+.+.+..+|..|+.+|+.++...+...... -..++|.++.++.+.+++++..++.+|..++...
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 11 3478999999999999999999999999998754332222 2578999999999999999999999999998532
Q ss_pred Cch--hH--HhHHHHHHhhhCCCCh-hHH-HHHHHHHhcccccCCCh-hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1531 KNP--EI--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2256)
Q Consensus 1531 ~~~--~i--~~lv~~Ll~~l~d~~~-~vr-~al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L 1603 (2256)
... .+ ...++.|+..+.+++. ..+ .+...|........... -.-...+|.+.+.+.+.+..++..++.++.++
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 11 3567888888887653 333 34444443222111100 01124678888899888999999999999999
Q ss_pred hhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCC-CHHHHHHH
Q 000098 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSGA 1678 (2256)
Q Consensus 1604 ~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~-~~~~R~~a 1678 (2256)
+..... . .....+++.|..++.++++.+|..++.+|+.++..-.+. .-...++.|++.+.+.. ...++..+
T Consensus 252 ~~~~~~-~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 252 SDAATK-Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp GGGCTT-C---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcchh-h---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 874211 1 223468899999999999999999999999997632110 11247888888887643 36789999
Q ss_pred HHHHHHHHHHhcHh------H-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCC
Q 000098 1679 AQGLSEVLAALGTV------Y-FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADE 1749 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~------~-l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~ 1749 (2256)
+.+++.+....+.. . ....++.+++.+.+++ +.+|..++.+++.++..-... .... ..++|.++..+.+.
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc
Confidence 99999886433321 1 1357889999998874 799999999999988643322 1121 34677777666543
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHHhhcc-c--hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1750 ----------------------NESVRDAALGAGHVLVEHYATT-S--LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2256)
Q Consensus 1750 ----------------------~~~VR~~Al~al~~iv~~~~~~-~--~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~ 1804 (2256)
++.++..++.++..+...-... . -...+|.+.+.+.+.+..++..++..++.+..
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2456667777776554211100 0 12367888888999999999999988888741
Q ss_pred hhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHH
Q 000098 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2256)
Q Consensus 1805 ~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l 1879 (2256)
. .+ . .......| .+..|.....+.+..||..|..++..+..+.+...
T Consensus 487 ~--------------------~~-~-~~~i~~~g------~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 487 D--------------------KE-A-AEAIEAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp S--------------------HH-H-HHHHHHTT------CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred C--------------------HH-H-HHHHHHcC------ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 0 00 1 11111112 24455666778899999999999998877665433
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-12 Score=174.11 Aligned_cols=462 Identities=11% Similarity=0.059 Sum_probs=315.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-ccc
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSL 1374 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-----~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~-~~~ 1374 (2256)
.++.|+..|.++++.+|..++.+|..+...... .....++.++..|.++++..+|+.|+.+|..+...... ..+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 357777778889999999999998888754321 12367888888887776789999999999987754211 111
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.....++.+.+.+.+. ++..+..++.++..++.........+. ...+|.++..+.+++..++..+..++..++...+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 1235788888888776 789999999999999887543233333 36899999999999999998888888888753222
Q ss_pred h--hH--HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1454 ~--~v--~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
. .+ ...++.+++.+.+.+ ...+..++.+|..++.+....-.-.-...++.++.++.+.++.++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 11 245778888887543 556777888888888643211111113578999999999999999999999999976
Q ss_pred hcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000098 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2256)
Q Consensus 1529 ~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~ 1608 (2256)
...... ....++|.+.+.+.+.++++|..++.++.+++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 432110 0113456666677777788888888888888752
Q ss_pred CCCcchh-hhhhhhHHHHHhhcCC--CHHHHHHHHHHHHHHHHhhCcC-------chHHHHHHHHHHhhcCCCHHHHHHH
Q 000098 1609 EPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2256)
Q Consensus 1609 ~~~~l~~-~l~~Ll~~L~~~L~d~--~~~VR~~a~~aL~~L~~~~g~~-------~~~~lip~Ll~~L~~~~~~~~R~~a 1678 (2256)
.+..... .-...++.|..++.+. .+.+|..++.+|+.++...++. .....+|.|.+.|.++.+..++..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 2111111 1124677777777653 3899999999999997532221 0124788999999876666789999
Q ss_pred HHHHHHHHHHhcHh-H--HHHHHHHHHHhccCC----------------------CHHHHHHHHHHHHHhHhhhChhHHH
Q 000098 1679 AQGLSEVLAALGTV-Y--FEHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~-~--l~~ll~~ll~~l~~~----------------------~~~vR~~al~~l~~La~~~g~~f~~ 1733 (2256)
+..++.+...-... . -...+|.+++.+.+. +..++..++.++..++........-
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l 453 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 453 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 98888876422111 1 134566666655442 3456677777777776543221111
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh-ccch--hchHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000098 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~-~~~~--~~llp~L~~~l~d~~~~iR~~sv~llg~ll 1803 (2256)
.-...+|.+...+.+.++.++..+..++..+...-. ...+ ...++.|.+.+.+++..+|..+..+++.+.
T Consensus 454 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 123578999999999999999999988877653200 0001 124677888889999999999999999874
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-12 Score=171.34 Aligned_cols=458 Identities=11% Similarity=0.061 Sum_probs=303.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-ccc
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSL 1374 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-----~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~-~~~ 1374 (2256)
.++.++..|.++++.+|..++.+|..+...... .....++.++..|.+++++.+|+.|+.+|..+...... ..+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 467778888889999999999988877643211 12357888888887776799999999999988754211 111
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.....++.+.+.+.++ ++..+..++.++..++...+..-.... ...+|.++..+.+++..+|..+..++..++...+.
T Consensus 98 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 1236788888888776 689999999999999887543222222 35789999999999999999998888877643211
Q ss_pred h--hH--HhHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1454 ~--~v--~~ilp~Ll~~L~~~~-w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
. .+ ...+|.+++.+.+.+ ...+..++.+|..++.+ ++.-.. .-...+|.+...+.+.++.++..++++|..++
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 1 11 245777777777543 44555677888888753 221111 11368899999999999999999999999998
Q ss_pred hhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1528 ~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
....... ....++|.+.+.+.+.++++|..++.++++++..
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~- 296 (529)
T 1jdh_A 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred cCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 6432110 0113556666777777788888888888888752
Q ss_pred CCCCcchhh-hhhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHHhhCcC-------chHHHHHHHHHHhhcCCCHHHHHH
Q 000098 1608 TEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2256)
Q Consensus 1608 ~~~~~l~~~-l~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~~~g~~-------~~~~lip~Ll~~L~~~~~~~~R~~ 1677 (2256)
++...... -...++.+...+.+ .++.+|..+..+|+.++...++. .-...+|.+.+.|.++.+..+|..
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 21111111 12356777777764 45899999999999986532221 011357888888887666678899
Q ss_pred HHHHHHHHHHHhcHh-HH--HHHHHHHHHhccCCCHHHHHHHHH----------------------HHHHhHhhhChhHH
Q 000098 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYLT----------------------LFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1678 aa~~L~~i~~~~g~~-~l--~~ll~~ll~~l~~~~~~vR~~al~----------------------~l~~La~~~g~~f~ 1732 (2256)
++..++.+...-... .+ ..++|.++..+.+.++.+|..+++ ++..++... +..
T Consensus 376 a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~~~ 453 (529)
T 1jdh_A 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNR 453 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--hHH
Confidence 998888887432111 11 356778887777666666654443 333333221 111
Q ss_pred HHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--hhccc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1733 ~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~--~~~~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
..+ ...+|.+...+.++++.++..+..++..+... +.... -...++.|.+.+.+++..+|..+...+..+
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111 24678999999999999999999888776421 10000 012567888888899999999888877654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=160.95 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=165.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-ccchhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhccCchHhHH
Q 000098 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2256)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~-~~~~~~~il~~L~~~l~-~~~~~~~Re~al~al~~L~~~l~~~~~pyv~ 1419 (2256)
+++.+ ++.+|.+|++|+.+|..++.+.+. .......+++.+...+. +. +..+|.+++.+++.++..++..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444 577899999999999999998432 11112368888888885 54 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC-hh-hHhhhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~-p~-~l~~~L 1497 (2256)
.++|.++..++|++..||+++..++..++...+ ++.++|.+...+.+.+|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999987654 5789999999999999999999999999987665 55 356789
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000098 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 1539 (2256)
+.++|.+..+++|++++||.+|..+++.++..+++..+..++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999999999999999999998865454433
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=159.79 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=169.5
Q ss_pred cCCCHHHHHHHHHHHHH-HHhhhCcc---cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-cCch-HhHHHH
Q 000098 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~-lv~~~g~~---~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~-~~~~-pyv~~l 1421 (2256)
.+.+|..|++|...|.. ++.+...- ......++..+.+.+.++.+..+|..|+.+++.++++++ ..|+ +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 56789999999999999 88653211 111236888888899555589999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh---h-HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh---hhHh
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~---~-v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p---~~l~ 1494 (2256)
+|.++..++|....||+++..++..++..+++. . ++.+++.++..+.+++|++|.+++.+|+.++...+ ..+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 999999999999999999999999999887542 1 56789999999999999999999999999999887 6688
Q ss_pred hhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000098 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2256)
Q Consensus 1495 ~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 1542 (2256)
.++ +.++|.+.+++.|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987776666554
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-12 Score=169.33 Aligned_cols=482 Identities=12% Similarity=0.048 Sum_probs=310.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
..++.+.+.+.++ ++..|+.|..++..++..... ....+ ...++.++..+.+ +++.+|..+..++..+...-...
T Consensus 17 ~~i~~Lv~lL~~~-~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 17 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCcc-HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 5677777777765 899999999999988754321 11111 2467777777654 47899999999999876542211
Q ss_pred -hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000098 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2256)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i 1530 (2256)
.+ ...+|.+++.+.+++..++..++.+|+.++...+...... -...+|.++.++.+++++++..++.+|..++..-
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 11 3578999999999999999999999999998754432111 2478999999999999999999999999887521
Q ss_pred Cc--hhH--HhHHHHHHhhhCCCChhH-H-HHHHHHHhcccccCCCh-hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1531 KN--PEI--ASLVPTLLMGLTDPNDHT-K-YSLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2256)
Q Consensus 1531 ~~--~~i--~~lv~~Ll~~l~d~~~~v-r-~al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L 1603 (2256)
.. ..+ ...++.|+..+.+++... + .+...+........... -.-...+|.+.+.+.+.++.++..++.++.++
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 11 111 345677777776654432 2 23444333222111000 01135688888999999999999999999999
Q ss_pred hhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcC-CCHHHHHHH
Q 000098 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD-NSNVERSGA 1678 (2256)
Q Consensus 1604 ~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~-~~~~~R~~a 1678 (2256)
+..... . ......+|.+..++.++++.+|..++.+++.++..-.+. .-...+|.+++.+.+. ....++..+
T Consensus 255 ~~~~~~-~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a 330 (529)
T 1jdh_A 255 SDAATK-Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330 (529)
T ss_dssp HTTCTT-C---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCChh-h---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHH
Confidence 974221 1 123568899999999999999999999999997531100 1124678888888763 346788899
Q ss_pred HHHHHHHHHHhcHh-----H--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhHhhhChhHHHHH-HHHHHHHHHhcCCC
Q 000098 1679 AQGLSEVLAALGTV-----Y--FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADE 1749 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~-----~--l~~ll~~ll~~l~~~~-~~vR~~al~~l~~La~~~g~~f~~yl-~~ilp~Ll~~L~d~ 1749 (2256)
+.+++.+....+.. . -...+|.++..+.+++ +.+|..++.+++.++...... .... ..++|.++..+.+.
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~ 409 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA 409 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHH
Confidence 99999886533221 1 1356888999998876 699999999999988643222 2222 35789999998888
Q ss_pred CHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHH
Q 000098 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2256)
Q Consensus 1750 ~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~ 1829 (2256)
++.+|..+..++.... +... . ....++..++..++.+.. + .+ .
T Consensus 410 ~~~v~~~a~~~l~n~~--~~~~------------~--~~~~i~~~~~~al~~L~~---------------~-----~~-~ 452 (529)
T 1jdh_A 410 HQDTQRRTSMGGTQQQ--FVEG------------V--RMEEIVEGCTGALHILAR---------------D-----VH-N 452 (529)
T ss_dssp HHHHC-------------CBTT------------B--CHHHHHHHHHHHHHHHTT---------------S-----HH-H
T ss_pred hHHHHHHHhcccCchh--hhcc------------c--cHHHHHHHHHHHHHHHhc---------------C-----ch-H
Confidence 8888887777655411 1100 0 112344455555555521 0 00 0
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHH
Q 000098 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP--VLMNTLISSLASSSSERRQVAGR 1907 (2256)
Q Consensus 1830 ~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~--~Ll~~L~~~L~~~~~~~R~~A~~ 1907 (2256)
...+.+ ...++.+...+.|.+..++..+..++..+... +.. ...+. ..++.+...+.++++++|..|..
T Consensus 453 ~~~l~~-------~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~~~-~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~ 523 (529)
T 1jdh_A 453 RIVIRG-------LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEA-AEAIEAEGATAPLTELLHSRNEGVATYAAA 523 (529)
T ss_dssp HHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHhc-------cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-HHH-HHHHHHcCChHHHHHHhcCCCHHHHHHHHH
Confidence 111111 12455666677888899999999988887643 222 22221 23455556667778888888877
Q ss_pred HHHHH
Q 000098 1908 ALGEL 1912 (2256)
Q Consensus 1908 aL~~l 1912 (2256)
+|..+
T Consensus 524 aL~~l 528 (529)
T 1jdh_A 524 VLFRM 528 (529)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-12 Score=167.96 Aligned_cols=505 Identities=13% Similarity=0.070 Sum_probs=313.2
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000098 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2256)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~ 1505 (2256)
-..+.+++...|..+..-+ +.-.+-++.+...++.+++.+.+++...|+.+...+..++...++.. .-++..+.
T Consensus 40 r~~l~~~~~~~k~~~l~kl--i~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l~ 113 (618)
T 1w63_A 40 RSSFREEDNTYRCRNVAKL--LYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCIK 113 (618)
T ss_dssp HHHHTTTCTTTHHHHHHHH--HHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHH--HHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHHH
Confidence 3344444444444432222 22223344456677778888888999999888877777766554422 24566777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHh
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2256)
+-++|+++.+|..|.++|+.++. ....+.+++.+.+.+.|++..+|. |+.++....- ........+++.+...
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~---~~p~~v~~~~~~l~~l 187 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR---KVPELMEMFLPATKNL 187 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---HCGGGGGGGGGGTTTS
T ss_pred HhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HChHHHHHHHHHHHHH
Confidence 88899999999999999988862 223478889999999999999974 5555443110 0112233566777888
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc---------------CCCHHHHHHHHHHHHHHHHh
Q 000098 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1585 L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~---------------d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
+.|.++.++..|+.++..++.. +++ ...++..++|.+...+. .+++..+....++++.++..
T Consensus 188 L~D~d~~V~~~Al~~L~~i~~~--~~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 188 LNEKNHGVLHTSVVLLTEMCER--SPD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCS--HHH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCCHhHHHHHHHHHHHHHHh--ChH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 8999999999999888888752 211 12234455565555443 24788888888888887753
Q ss_pred hCc--CchHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHh
Q 000098 1650 MGE--ENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2256)
Q Consensus 1650 ~g~--~~~~~lip~Ll~~L~~~--~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~ 1725 (2256)
-.. +.+.++++.+....... .+..+...++.++..+.. ........++.+...+.++++.+|..++.+++.++.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~ 342 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ 342 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 110 01222333333221111 122345555555544211 112223456677777888899999999999999988
Q ss_pred hhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 000098 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2256)
Q Consensus 1726 ~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~ 1805 (2256)
..+..+.+| .+.++.++.|++..||..|++.+..++. ...+..+++.+.+.+.+.+..+|..++..+|.+..+
T Consensus 343 ~~p~~~~~~----~~~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 343 TDHNAVQRH----RSTIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHGGG----HHHHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hCHHHHHHH----HHHHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 765544444 4567778899999999999888776643 344667888888888888899999999999998643
Q ss_pred hcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 000098 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2256)
Q Consensus 1806 ~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~ 1885 (2256)
.++ ..+ ..+..+...+.+....++..+...+..++.+.|......++.
T Consensus 416 ~~~----------------~~~----------------~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~ 463 (618)
T 1w63_A 416 YAP----------------SKR----------------WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQR 463 (618)
T ss_dssp SCC----------------CHH----------------HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHH
T ss_pred hCc----------------cHH----------------HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 110 011 112222222222222344445556666666666544456666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc---------ch-hchHHHHhhhcC--CCChhhHHhHHHHHHHHHHh
Q 000098 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1886 Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---------~l-~~llp~L~~~l~--d~~~~vR~~a~~aL~eii~~ 1953 (2256)
+...+.... .... ....+++++|+.+..+... .. ..+++.+...+. ..++.+|..+..++..+...
T Consensus 464 L~~~l~~~~-~~~~-~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 464 LYKAILGDY-SQQP-LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHHCC-SCSH-HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc-ccHH-HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 666554211 2233 4456899999998865321 11 223444444332 45788999998888877765
Q ss_pred hChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000098 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1954 ~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~ 1993 (2256)
.+. ..+.+...+.....|.+.+||+.|...+..+.
T Consensus 542 ~~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 542 FTC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CSS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred Ccc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 432 12334455556678899999999987666553
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-10 Score=154.17 Aligned_cols=476 Identities=14% Similarity=0.106 Sum_probs=308.0
Q ss_pred cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
|.+........+..+ .++++..|+-+..++..++..- ++.. ..+++.+.+-+.+. ++.+|..|+.+++.+..
T Consensus 65 G~d~~~~~~~vik~~-~s~~~~~Krl~Yl~~~~~~~~~-~e~~--~l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLI-ASQKFTDKRIGYLGAMLLLDER-QDVH--LLMTNCIKNDLNHS-TQFVQGLALCTLGCMGS--- 136 (618)
T ss_dssp TCCCGGGHHHHHHHH-HSSSHHHHHHHHHHHHHHCCCC-HHHH--HHHHHHHHHHHSCS-SSHHHHHHHHHHHHHCC---
T ss_pred CCCCcchHHHHHHHH-cCCchHHHHHHHHHHHHHhCCC-cHHH--HHHHHHHHHhcCCC-CHhHHHHHHHHHHhcCC---
Confidence 444433444444444 4667899988887777766532 1111 13566677777765 78899888888877742
Q ss_pred cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh
Q 000098 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~ 1491 (2256)
......++|.+..++.|+++.||.+|..++..+....+ +.++.+++.+.+.+.|.+..++.+|+.+|+.++...|+
T Consensus 137 ---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 ---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 24566788999999999999999999999999987554 44567888888889999999999999999999876554
Q ss_pred hHhhhhhhHHHHHHHhhcC---------------CCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhC---C---C
Q 000098 1492 QLSQCLPKIVPKLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLT---D---P 1549 (2256)
Q Consensus 1492 ~l~~~L~~Ivp~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~---d---~ 1549 (2256)
. ...+..++|.++..|.+ +++..+....++|+.++.. +|.. +.+.+.|...+. . .
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccch
Confidence 2 22344555655555442 4788888888888888753 3332 333333333321 1 1
Q ss_pred ChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1550 NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1550 ~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
+..+. +|+..+..... ........++.+.+.+.+.++++|..+...++.++.. .+.. +....+.++.++
T Consensus 290 ~~aV~~ea~~~i~~l~~----~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~----~~~~~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDIKS----ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNA----VQRHRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHH----HGGGHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHH----HHHHHHHHHHHc
Confidence 12232 56666654211 1222334667778888888899999999999988863 2222 333456777888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCC
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ 1708 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~ 1708 (2256)
.|++..+|..+...+..++. +.....+++.+++.+.+ .+...|..++.+++.++..+... ...+++.+++.+.+.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDS-CEPEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTA 434 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHT
T ss_pred cCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhc
Confidence 99999999999998888764 34567888888888876 56678999999999998876533 455667777776666
Q ss_pred CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhhcc----------chhch
Q 000098 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2256)
Q Consensus 1709 ~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d--~~~~VR~~Al~al~~iv~~~~~~----------~~~~l 1776 (2256)
...++..++..+..+....++. .. .+++.+...+.+ ..+.+...+++.++......... ....+
T Consensus 435 ~~~v~~~~~~~l~~ii~~~p~l-~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~ 510 (618)
T 1w63_A 435 GSYVRDDAVPNLIQLITNSVEM-HA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEV 510 (618)
T ss_dssp GGGSCSSHHHHHHHHHHHSCST-HH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHH
T ss_pred cchhHHHHHHHHHHHHhcChhH-HH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHH
Confidence 5566666666666666544432 22 233444444432 12233345677766665443220 11123
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhc
Q 000098 1777 LPAVEDGIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2256)
Q Consensus 1777 lp~L~~~l~--d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2256)
++.+...+. .++..+|..++.++..+..+.+ + . .+.+...|-....
T Consensus 511 ~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~------------~---~-----------------~~~l~~~L~~~~~ 558 (618)
T 1w63_A 511 LDILESVLISNMSTSVTRGYALTAIMKLSTRFT------------C---T-----------------VNRIKKVVSIYGS 558 (618)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS------------S---C-----------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc------------c---h-----------------HHHHHHHHHHhcC
Confidence 444444332 5678899999999888853210 0 0 0111111223357
Q ss_pred CCcHHHHHHHHHHHHHHHh
Q 000098 1855 DVSLSVRQAALHVWKTIVA 1873 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~ 1873 (2256)
|.+.+||+.|...|.-+..
T Consensus 559 ~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 559 SIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 8889999999998876544
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-11 Score=160.16 Aligned_cols=378 Identities=14% Similarity=0.122 Sum_probs=269.9
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
++.++..+...+..++..|..+++.+.+.-.. +.+ ..++|.|++.|. +++...+..|+.+|+.++.+.++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566777888899999999999887653222 122 247899999997 456889999999999999887765433
Q ss_pred hhh-hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhhCCCChh------HHHHHHHHHhcc
Q 000098 1496 CLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQTT 1564 (2256)
Q Consensus 1496 ~L~-~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l~d~~~~------vr~al~~L~~~~ 1564 (2256)
... ..+|.|+.+|.++++.||..|+++|++++..-.. ..+ ...++.|+..+..++.. .+.+...+....
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 332 6899999999999999999999999999864221 112 35678888888876532 234444444311
Q ss_pred cc--cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHHH
Q 000098 1565 FV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2256)
Q Consensus 1565 ~~--~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~~ 1641 (2256)
.. ..........++|.+.+.+.+.+++++..++.++.+++.. ...... -.-..+++.|..++.++++.++..+++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 11 1122234567889999999999999999999999999862 211111 112457889999999999999999999
Q ss_pred HHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-HHHHHHHHHHhccCCCHHHH
Q 000098 1642 AIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASVR 1713 (2256)
Q Consensus 1642 aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l~~ll~~ll~~l~~~~~~vR 1713 (2256)
+++.++..-... .-...++.|...|.+ .+..+|..++.+++.+....... . -..++|.++..+.+.+..+|
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 999987422111 012345556666655 56678999999999987543222 1 14688999999999999999
Q ss_pred HHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----chh------chHHHHH
Q 000098 1714 DGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----SLP------LLLPAVE 1781 (2256)
Q Consensus 1714 ~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----~~~------~llp~L~ 1781 (2256)
..++.+++.++.....+...++ ..+++++++.|...++.++..++.++..|.+..... .+. ..+..+.
T Consensus 376 ~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie 455 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 455 (510)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHH
Confidence 9999999999876555433444 357899999999999999999999998887643221 111 1345566
Q ss_pred hhcCCCCHHHHHHHHHHHHHH
Q 000098 1782 DGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1782 ~~l~d~~~~iR~~sv~llg~l 1802 (2256)
....++|..++..+..++...
T Consensus 456 ~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 456 ALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHH
Confidence 666788999999998888765
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.40 E-value=8e-11 Score=156.37 Aligned_cols=379 Identities=14% Similarity=0.124 Sum_probs=271.4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~ 1494 (2256)
.++.++..+..+++.++..|..+++.+...-.. +.+ ..++|.+++.+. +++...+..|+.+|+.++.+.+....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356667777788888888888888877643222 122 357899999997 56688999999999999988776533
Q ss_pred hhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhhCCCChh------HHHHHHHHHhc
Q 000098 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQT 1563 (2256)
Q Consensus 1495 ~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l~d~~~~------vr~al~~L~~~ 1563 (2256)
... ...+|.|+.++.++++.||..|+++|+.++..-.. ..+ ...++.|+..+.+++.. .+.+...+...
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 222 36899999999999999999999999999864211 112 35678888888876532 23344444331
Q ss_pred cc--ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHH
Q 000098 1564 TF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2256)
Q Consensus 1564 ~~--~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~ 1640 (2256)
.. ...........++|.+.+.+.+.+++++..++.++.+++.. ...... -.-..++|.|..++.++++.++..++
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 11 11122234567889999999999999999999999998862 211111 11246789999999999999999999
Q ss_pred HHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---H-HHHHHHHHHHhccCCCHHH
Q 000098 1641 RAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASV 1712 (2256)
Q Consensus 1641 ~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~-l~~ll~~ll~~l~~~~~~v 1712 (2256)
++++.++..-... .-...++.|...|.+ .+..+|..++.+++.++.+.... . -..++|.++..+.+.+..+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 9999987421110 112356777777775 56678999999999987543222 1 1458899999999999999
Q ss_pred HHHHHHHHHHhHhhhChhHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----chh------chHHHH
Q 000098 1713 RDGYLTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----SLP------LLLPAV 1780 (2256)
Q Consensus 1713 R~~al~~l~~La~~~g~~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----~~~------~llp~L 1780 (2256)
|..++.+++.++.....+...++- .++++++..|...++.++..++.++..|.+..... .+. ..+..+
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 473 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 473 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH
Confidence 999999999988765544334442 47899999999999999999999998887543211 111 134556
Q ss_pred HhhcCCCCHHHHHHHHHHHHHH
Q 000098 1781 EDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1781 ~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
.....++|..++..|..++...
T Consensus 474 e~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 474 EALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 6666788999999998888765
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-11 Score=154.65 Aligned_cols=386 Identities=15% Similarity=0.126 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---cccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g---~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
++.++..+ ++++...+..|.+++..++..-. .+.+....++|.|.+.+...+++..+..|.+++..|+.+..+.-.
T Consensus 59 i~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44455555 34457777777777777664322 122223468899999988777889999999999999864332212
Q ss_pred HhHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCCh-----hHHHHHHHHHHHH
Q 000098 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 1485 (2256)
Q Consensus 1416 pyv~-~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~R~~a~~~Lg~l 1485 (2256)
..+. ..+|.++..+.+++..||+.|.++++.++...+.. .+ ...++.++..+.+.+. ...+.++.++..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 2222 37899999999999999999999999998654331 12 3467888888875443 3455677788888
Q ss_pred HhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc
Q 000098 1486 AYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2256)
Q Consensus 1486 a~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2256)
+.... .........++|.|..++.+.+++|+..|+++|..++..- ++... .+.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~--~~~~~---------------------~i~--- 271 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIE---------------------MVV--- 271 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHH---------------------HHH---
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch--hhhHH---------------------HHH---
Confidence 76542 2222344678999999999999999999999999987532 11100 000
Q ss_pred cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
-..++|.+...+.+.++.++..++.++++++.. +...... .-...++.|..++.++++.+|..++.+|
T Consensus 272 ---------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 272 ---------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp ---------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred ---------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 012456666777777788888888888888752 2111111 1134567777888899999999999999
Q ss_pred HHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH-----HHHHHHHHHhccCCCHHHHH
Q 000098 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2256)
Q Consensus 1644 ~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~ll~~ll~~l~~~~~~vR~ 1714 (2256)
+.++...... .-..++|.++..+.+ .+..+|..++.+++.++.....+.. ...++.++..+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997532211 113578889888886 5677999999999998876554432 35788999999999999999
Q ss_pred HHHHHHHHhHhhh---Ch--hHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1715 GYLTLFKYLPRSL---GV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1715 ~al~~l~~La~~~---g~--~f~~yl~--~ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.++.++..+.... +. .+..+++ ..+..|-.+..+++++|++.|...+..
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999988776543 22 2222332 245666666778899998887666544
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=152.58 Aligned_cols=198 Identities=19% Similarity=0.277 Sum_probs=160.7
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCc---h
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN---P 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~---~ 1533 (2256)
.+-+.+.+.+.+.+|+.|++|+..|..++.++++.....+.++++.+...+. |++..||..|+.+++.++..++. +
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3445678888999999999999999999998766545566889999999995 99999999999999999988875 5
Q ss_pred hHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000098 1534 EIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2256)
Q Consensus 1534 ~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~ 1612 (2256)
++..++|.++..+.|++..+|+ +..++... ... ..+..++|.+...+.+++|.+|..+..+++.+....+....
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~--~~~---~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAI--YAS---TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHH--HTT---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HHc---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 6789999999999999988885 33333221 111 13567899999999999999999999999997653221124
Q ss_pred chhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHH
Q 000098 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2256)
Q Consensus 1613 l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip 1660 (2256)
..+|++.++|.+..++.|++++||..|..+++.++..+|++.+..+++
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 578999999999999999999999999999999999999754444333
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-10 Score=153.53 Aligned_cols=478 Identities=12% Similarity=0.101 Sum_probs=299.9
Q ss_pred hHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000098 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2256)
Q Consensus 1452 ~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~ 1531 (2256)
-++.+...++.+++.+.+++...|+.+...+..++...++.+ --++..+.+-++|+++.+|..|..+|+.+.
T Consensus 68 ~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---- 139 (621)
T 2vgl_A 68 LGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVG---- 139 (621)
T ss_dssp HSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----
T ss_pred cCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccC----
Confidence 345566678888899999999999999998888887776543 245667777889999999999999999885
Q ss_pred chh-HHhHHHHHHhhh--CCCChhHHH-HHHHHHhc-ccccCCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000098 1532 NPE-IASLVPTLLMGL--TDPNDHTKY-SLDILLQT-TFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2256)
Q Consensus 1532 ~~~-i~~lv~~Ll~~l--~d~~~~vr~-al~~L~~~-~~~~~~~~~~l--~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~ 1604 (2256)
.++ .+.++|.+.+++ .|+++++|. |+-++... ... .... ..+++.+.+.+.|+++.++..|..++..++
T Consensus 140 ~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~----p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 140 SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS----PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC----GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC----hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 344 488999999999 999999984 44443331 111 1111 256788899999999999999999998888
Q ss_pred hhcCCCCcchhhhhhhhHHHHHhhcCC-------------CHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhc
Q 000098 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1605 ~~l~~~~~l~~~l~~Ll~~L~~~L~d~-------------~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~ 1668 (2256)
.. ++..+.++.+.++..+.+++.++ ++-.|-...+.++.++..-.++ .+.++++.+++.+.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~ 293 (621)
T 2vgl_A 216 QK--NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQE 293 (621)
T ss_dssp HH--CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred Hh--ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 63 44445566666777776665432 5677777777776654311111 123344444444322
Q ss_pred CC---C-------HHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHH
Q 000098 1669 DN---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2256)
Q Consensus 1669 ~~---~-------~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~i 1738 (2256)
.. . ..+...++.++..+. -..+........+...+.++++.+|-.++..+..++...+. .+++...
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~ 369 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTH 369 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTT
T ss_pred CcccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 11 0 012222222222211 12234566777788888889999999999999998876542 1244555
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000098 1739 LPAILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2256)
Q Consensus 1739 lp~Ll~~L~-d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~ 1817 (2256)
.+.++..+. |++..||..+++.+..++. ...+..++.++.+.+.+.+...|..++..+|.+..+.+..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~-------- 438 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD-------- 438 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--------
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--------
Confidence 667777888 9999999988888766642 3356678888888887778889999999998876432110
Q ss_pred CCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC
Q 000098 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2256)
Q Consensus 1818 ~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~ 1897 (2256)
.+.....+.+.+ ....+ .+...+...+..++.+.|..-...+..++ +.+.++
T Consensus 439 --------~~~~v~~Ll~ll-------------~~~~~---~v~~ev~~~l~~ii~~~~~~~~~~~~~l~----~~l~~~ 490 (621)
T 2vgl_A 439 --------YTWYVDTILNLI-------------RIAGD---YVSEEVWYRVIQIVINRDDVQGYAAKTVF----EALQAP 490 (621)
T ss_dssp --------THHHHHHHHHHH-------------HHHGG---GSCSHHHHHHHHHHGGGCSCHHHHHHHHH----HHHTSS
T ss_pred --------HHHHHHHHHHHH-------------Hhhcc---cchHHHHHHHHHHHhCChhHHHHHHHHHH----HHHcCc
Confidence 111111122111 11111 12233333444444444332222333333 334444
Q ss_pred C--HHHHHHHHHHHHHHHHhhCcc--ch-hchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHH
Q 000098 1898 S--SERRQVAGRALGELVRKLGER--VL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2256)
Q Consensus 1898 ~--~~~R~~A~~aL~~lv~~~~~~--~l-~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~ 1972 (2256)
. ..+-..+++.+|+.+..+... .. .+++..+.+.+.+.++.+|..+..++..+....+ + . .+.+...+..
T Consensus 491 ~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~ 565 (621)
T 2vgl_A 491 ACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRS 565 (621)
T ss_dssp SCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSS
T ss_pred cchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHH
Confidence 2 345567779999887755432 11 2556666666777788999998888877755432 1 1 1223333434
Q ss_pred Hhc--CCCHHHHHHHHHHHHH
Q 000098 1973 ALC--DSILEVRESAGLAFST 1991 (2256)
Q Consensus 1973 ~L~--D~~~~VR~~A~~al~~ 1991 (2256)
+.. |.+.+||+.|..-+.-
T Consensus 566 ~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 566 DSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HHHHSCSSHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHH
Confidence 455 8999999998764443
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-10 Score=151.08 Aligned_cols=386 Identities=15% Similarity=0.121 Sum_probs=262.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~---~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
++.++..+. +++...+..|...+..++..-.. +.+....++|.+.+.+....++..+..|.+++..++.+....-.
T Consensus 78 l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344444443 34466677777777666543211 12223468889988987776899999999999999865432112
Q ss_pred HhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCCh-----hHHHHHHHHHHHH
Q 000098 1416 PYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 1485 (2256)
Q Consensus 1416 pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~R~~a~~~Lg~l 1485 (2256)
..+ ...+|.++..+.+++..||+.|.++++.++..-+.. .+ ...++.++..+.+.+. .....++.++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 222 247899999999999999999999999998643321 12 3468888888875443 3455677788888
Q ss_pred HhhChh-hHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcc
Q 000098 1486 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2256)
Q Consensus 1486 a~~~p~-~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2256)
+..... ........++|.|..++.+++++|+..|+++|..++..-. .... .+.
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~~---------------------~v~--- 290 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERIE---------------------MVV--- 290 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHHH---------------------HHH---
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhHH---------------------HHH---
Confidence 765422 2223446789999999999999999999999999875321 1100 000
Q ss_pred cccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL 1643 (2256)
...++|.+...+.+.++.++..++.++++++.. +..... -.-...++.|..++.++++.+|..|+.+|
T Consensus 291 ---------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 291 ---------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp ---------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred ---------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 012456666777777888888888888888752 211111 11235678888899999999999999999
Q ss_pred HHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHH-----HHHHHHHHHhccCCCHHHHH
Q 000098 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2256)
Q Consensus 1644 ~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~ll~~ll~~l~~~~~~vR~ 1714 (2256)
+.++...... .-..++|.++..+.+ .+..+|..++.+|+.++.....+.. .+.++.++..+.++++.++.
T Consensus 360 ~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHhcccHHHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998532111 112478889888886 5667899999999998876554422 35788999999999999999
Q ss_pred HHHHHHHHhHhhh---Ch--hHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000098 1715 GYLTLFKYLPRSL---GV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHV 1763 (2256)
Q Consensus 1715 ~al~~l~~La~~~---g~--~f~~yl~~--ilp~Ll~~L~d~~~~VR~~Al~al~~ 1763 (2256)
.++.++..+.... +. .+..++++ .+..|-.+..+++++|++.|...+..
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999988876543 22 12222221 34556666678899999887666554
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=142.57 Aligned_cols=199 Identities=10% Similarity=0.201 Sum_probs=162.3
Q ss_pred HHHHhccCCChhHHHHHHHHHHH-HHhhChhhH--hhhhhhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhcC-c----
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N---- 1532 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~-la~~~p~~l--~~~L~~Ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~i~-~---- 1532 (2256)
.+.+.+.+.+|+.|++|++.|+. +++++++.. ...+..++..+.+.+ +|++..||..|+.+++.+++.++ +
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45567789999999999999999 988777655 455678899999999 89999999999999999999887 2
Q ss_pred hhHHhHHHHHHhhhCCCChhHHH----HHHHHHhcccccCCCh-hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1533 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1533 ~~i~~lv~~Ll~~l~d~~~~vr~----al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
++...++|.++..+.|....+++ ++..+... ...... +++..+++.+...+.+.+|.+|..+..+++.++...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 56688999999999999877764 44444431 111111 236679999999999999999999999999998753
Q ss_pred CCC-Ccchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHH
Q 000098 1608 TEP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2256)
Q Consensus 1608 ~~~-~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~L 1662 (2256)
... ..+.+|+ +.++|.+..++.|+++.||..|..+++.++..+|++.+..+++.|
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 221 4577899 999999999999999999999999999999999987666666654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-09 Score=141.93 Aligned_cols=491 Identities=15% Similarity=0.123 Sum_probs=301.4
Q ss_pred cCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2256)
Q Consensus 1332 ~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~ 1411 (2256)
|.+........+. +..+++...|+-+..++..+++.-.+... -+++.+.+-+.+. |+..|-.|+.+++.+..
T Consensus 69 G~d~s~~~~~vvk-l~~s~~~~~Krl~YL~l~~~~~~~~e~~~---L~iN~l~kDl~~~-n~~ir~lALr~L~~i~~--- 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVN-LLSSNRYTEKQIGYLFISVLVNSNSELIR---LINNAIKNDLASR-NPTFMGLALHCIANVGS--- 140 (621)
T ss_dssp SCCCCSCHHHHHH-GGGCSCHHHHHHHHHHHHHSCCCCHHHHH---HHHHHHHHHHHSC-CHHHHHHHHHHHHHHCC---
T ss_pred CCCCchhHHHHHH-HhcCCCHHHHHHHHHHHHHHccCCcHHHH---HHHHHHHHhcCCC-CHHHHHHHHHHhhccCC---
Confidence 4444444445555 55677899999888888777754321111 3566677777766 89999888887777632
Q ss_pred cCchHhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHhhhhHhhHH--hHHHHHHHhccCCChhHHHHHHHHHHHHHh
Q 000098 1412 RLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAMMSQLSAQGVK--LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2256)
Q Consensus 1412 ~~~~pyv~~llp~ll~~l--~D~~~~VR~aa~~al~~l~~~l~~~~v~--~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~ 1487 (2256)
..+...++|.+..++ .|.++.||++|+-|+..+.... ++.++ .+++.+.+.+.|.+..++.+|+.++..++.
T Consensus 141 ---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 141 ---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp ---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 346778889999999 9999999999999999998854 34455 788999999999999999999999999999
Q ss_pred hChhhHhhhhhhHHHHHHHhhcCC-------------CHHHHHHHHHHHHHHHhhcCchhH-HhH---HHHHHhhhCCCC
Q 000098 1488 CAPQQLSQCLPKIVPKLTEVLTDT-------------HPKVQSAGQTALQQVGSVIKNPEI-ASL---VPTLLMGLTDPN 1550 (2256)
Q Consensus 1488 ~~p~~l~~~L~~Ivp~L~~~L~D~-------------~~~VR~aA~~aL~~l~~~i~~~~i-~~l---v~~Ll~~l~d~~ 1550 (2256)
..|+.+...++.++..+.+++.+. +|..+....+.+..++.. .++.. +.+ ++.++..+.+..
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCc
Confidence 888776666677776666655332 344554444444333211 01111 111 111111110000
Q ss_pred hhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCH--HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh
Q 000098 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSA--ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2256)
Q Consensus 1551 ~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~--~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L 1628 (2256)
. .. .+++.+. .+...++.++..+. . ..++....+..+..++
T Consensus 296 k-------------------s~-----------~l~~~n~~~aVl~ea~~~i~~l~----~---~~~~~~~~~~~L~~~L 338 (621)
T 2vgl_A 296 K-------------------SK-----------KVQHSNAKNAVLFEAISLIIHHD----S---EPNLLVRACNQLGQFL 338 (621)
T ss_dssp S-------------------CS-----------SHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHS
T ss_pred c-------------------cc-----------cccccchHHHHHHHHHHHHHhcC----C---cHHHHHHHHHHHHHHh
Confidence 0 00 0011111 34444444443332 1 2345556777788888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhC-cCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC
Q 000098 1629 VDPIPEVRSVAARAIGSLIRGMG-EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH 1707 (2256)
Q Consensus 1629 ~d~~~~VR~~a~~aL~~L~~~~g-~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~ 1707 (2256)
.++++.+|..+..++..++...+ .+.+....+.++..|..+++..+|..+...+..++ ..+..+.++..+...+.+
T Consensus 339 ~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 339 QHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLET 415 (621)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHh
Confidence 88999999999999999986543 12345556667777773456668887777665554 345678888888888888
Q ss_pred CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCC
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND 1787 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~ 1787 (2256)
.+...|..++..++.++..+.+.+..|++.++..+-..- ..+...+...+..++.... +.-...+..+.+.+.++
T Consensus 416 ~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~----~~v~~ev~~~l~~ii~~~~-~~~~~~~~~l~~~l~~~ 490 (621)
T 2vgl_A 416 ADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAG----DYVSEEVWYRVIQIVINRD-DVQGYAAKTVFEALQAP 490 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHG----GGSCSHHHHHHHHHHGGGC-SCHHHHHHHHHHHHTSS
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHcCc
Confidence 899999999999999999888888788776666554322 1233333344444443321 11122334444444443
Q ss_pred C--HHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHH
Q 000098 1788 N--WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865 (2256)
Q Consensus 1788 ~--~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~ 1865 (2256)
. ..+-..++-.+|+....+.+. +...+ .+++..++....+.+..||..++
T Consensus 491 ~~~~~li~~~~wilGEy~~~~~~~------------~~~~p----------------~~~l~~l~~~~~~~~~~v~~~~L 542 (621)
T 2vgl_A 491 ACHENLVKVGGYILGEFGNLIAGD------------PRSSP----------------LIQFNLLHSKFHLCSVPTRALLL 542 (621)
T ss_dssp SCCHHHHHHHHHHHHHHTHHHHSS------------TTSCH----------------HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cchHHHHHHHHHHhcchHHHhccc------------CCCCH----------------HHHHHHHHHHhccCCHHHHHHHH
Confidence 3 233344446666653221110 00000 12344444455677788999998
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000098 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGEL 1912 (2256)
Q Consensus 1866 ~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~--~~~~~~R~~A~~aL~~l 1912 (2256)
.++..++...|. ..+.+..++. .+.. +.+.++|+.|...+.-+
T Consensus 543 ta~~Kl~~~~p~-~~~~i~~~l~---~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 543 STYIKFVNLFPE-VKATIQDVLR---SDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHCGG-GHHHHHHHHS---SHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChH-HHHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHHH
Confidence 888777776654 2333333332 2234 78899999888766544
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-07 Score=124.47 Aligned_cols=312 Identities=13% Similarity=0.133 Sum_probs=198.2
Q ss_pred CCcHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhhC--ccchhchHH
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASS-----SSERRQVAGRALGELVRKLG--ERVLPSIIP 1926 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~-~l~~~l~~Ll~~L~~~L~~~-----~~~~R~~A~~aL~~lv~~~~--~~~l~~llp 1926 (2256)
..+|..+++++-++++++....+ .-++++|.+++.++.....+ ...++......+|+..+.+. ..+++.++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 34688889988889988766553 45689999999888765443 12345555578887777653 447888888
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhh-------HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh
Q 000098 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2256)
Q Consensus 1927 ~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l-------~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~ 1999 (2256)
.+.+++.++++.++..+|.++..+...|+.... .||+.+++..+.....+-.++-...-.+|++.++...+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 888999998999999999999999998876532 4688888888888877777777777778888888776643
Q ss_pred h-----HHhHHHHHHHhhccCCchHHHHHHHHHHHhh--hcccch--hhhhhhhhcCchhhhHHHHHHHHHHHhCCCccc
Q 000098 2000 A-----IDEIVPTLLHALEDDQTSDTALDGLKQILSV--RTTAVL--PHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070 (2256)
Q Consensus 2000 ~-----~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~--~~~~~l--p~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~ 2070 (2256)
. ++.++|.+.+. +.+++.. ....++ |..+..+ ....++..+++...|..|.+
T Consensus 650 ~~~~~~i~~Lm~~~~~~-------------w~~l~~~~~~~~~~~~d~~~i~~l------~~il~~n~~v~~~~g~~f~~ 710 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLPNQV-------------WDSIIQQATKNVDILKDPETVKQL------GSILKTNVRACKAVGHPFVI 710 (1073)
T ss_dssp HHHHHHHHHHTHHHHHH-------------HHHHHHHHHHCGGGGGCHHHHHHH------HHHHHHHHHHHHHHCGGGHH
T ss_pred chHHHHHHHHHHHHHHH-------------HHHHHHHhhcCchhccChHHHHHH------HHHHhhhHHHHhhcchhHHH
Confidence 2 23333332222 2222210 000000 0000111 02345666777888999999
Q ss_pred cHhhHHHHHHHhhCC-----------------CCHH------HHHHHHHHHHHHHhhcch------hcHHHHHHHHHhhc
Q 000098 2071 HLGTILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSELLKGV 2121 (2256)
Q Consensus 2071 ~l~~Ilp~Ll~~l~~-----------------~~~~------vr~~a~~al~~l~~~~~~------~~~~~ll~~Ll~~l 2121 (2256)
++..|+|.+++..+- +.+. +|...++.+.+.+...++ .-+++++..++.-.
T Consensus 711 ~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY 790 (1073)
T 3gjx_A 711 QLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDY 790 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHH
Confidence 999999987764321 1121 233444444544443211 22344555555544
Q ss_pred CCCChhhHHH-HHHHHHHHHHhchhhhhhhHHHHHHHHHH----HcC---CCChHHHHHHHHHHHHhhccCC
Q 000098 2122 GDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2122 ~~~~~~vR~~-A~~~l~~l~~~~~~~~~~y~~~il~~L~~----~l~---D~d~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
....|..|.. .++++..++.+.+..+.++++.++..++. +++ +..++.|.+=..=+.++..+..
T Consensus 791 ~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f 862 (1073)
T 3gjx_A 791 QRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCF 862 (1073)
T ss_dssp HHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred hcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHh
Confidence 4444555544 55777788888888888998888887754 454 3457888877666666655433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-06 Score=114.03 Aligned_cols=331 Identities=15% Similarity=0.137 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhc---CCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhc
Q 000098 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~---d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~ 1668 (2256)
.+..|...+|.+.. ++..+ .+..|...+. ..++.+|..|+.++|.+....+. +.+..|.+.|.+
T Consensus 374 ~k~sA~aSLGlIh~--g~~~~-------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~~~~lL~~~L~~ 440 (963)
T 4ady_A 374 AKFTATASLGVIHK--GNLLE-------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----DTTDYLKNIIVE 440 (963)
T ss_dssp HHHHHHHHHHHHTS--SCTTT-------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc--CchHH-------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHcC
Confidence 45566666666654 33222 2333333443 56789999999999998876653 456667777765
Q ss_pred CC-------CHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHH
Q 000098 1669 DN-------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2256)
Q Consensus 1669 ~~-------~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~ 1741 (2256)
+. ...+|.+++.+||.+..+.+.+ .+++.+...+.+.+..+|..+..++|.+-...|.. ..+..++..
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e---ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~ 515 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMGSANI---EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTY 515 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHH
Confidence 44 3568999999999876665544 34444555555666778888888888654433432 234444444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhc-cchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCC
Q 000098 1742 ILDGLADENESVRDAALGAGHVLVEHYAT-TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2256)
Q Consensus 1742 Ll~~L~d~~~~VR~~Al~al~~iv~~~~~-~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~e 1820 (2256)
+. .+.++.+|..+.-++..+ .++. +.++.++..|. .+.+|-+|..++-.+|--. .|..
T Consensus 516 ~~---e~~~e~vrR~aalgLGll--~~g~~e~~~~li~~L~---~~~dp~vRygaa~alglAy---aGTG---------- 574 (963)
T 4ady_A 516 SQ---ETQHGNITRGLAVGLALI--NYGRQELADDLITKML---ASDESLLRYGGAFTIALAY---AGTG---------- 574 (963)
T ss_dssp HH---HCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHT---TTSC----------
T ss_pred Hh---ccCcHHHHHHHHHHHHhh--hCCChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHh---cCCC----------
Confidence 43 355778998888877765 2332 23333333333 3678999999887776431 1110
Q ss_pred CCCcchHHHHHHHHHHhcchhhHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCH
Q 000098 1821 DEGASTEAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899 (2256)
Q Consensus 1821 d~~~~~e~~~~~l~~~Lg~e~~~~vl~-~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~ 1899 (2256)
.. ..+. -|..+..|.+..||+.|+..++-+....+. .++.++..+ ..+.++
T Consensus 575 -----n~----------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e----~v~rlv~~L---~~~~d~ 626 (963)
T 4ady_A 575 -----NN----------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT----TVPRIVQLL---SKSHNA 626 (963)
T ss_dssp -----CH----------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS----SHHHHTTTG---GGCSCH
T ss_pred -----CH----------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH----HHHHHHHHH---HhcCCH
Confidence 00 1122 122345677888999999998876555443 344444433 357899
Q ss_pred HHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcC--C
Q 000098 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--S 1977 (2256)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D--~ 1977 (2256)
.+|..++.+||.++... ..+.++..|....+|++..+|++++.+++.+...... ...|.+..+...+.....| .
T Consensus 627 ~VR~gAalALGli~aGn---~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn-a~~~rva~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 627 HVRCGTAFALGIACAGK---GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE-KLNPQVADINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHHHHHHHHHTSSS---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT-TTCTTHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhccCC---CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc-ccchHHHHHHHHHHHHHhcccc
Confidence 99999999999887322 2467788888888999999999999999987654332 2334556666666666765 5
Q ss_pred CHHHHHHHHHHHHHHH
Q 000098 1978 ILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1978 ~~~VR~~A~~al~~l~ 1993 (2256)
++.+|-.|.-|.|.+.
T Consensus 703 d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 703 EGLAKFGACVAQGIMN 718 (963)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh
Confidence 6788988888888776
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.2e-10 Score=133.42 Aligned_cols=247 Identities=17% Similarity=0.117 Sum_probs=151.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhH
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~i 1459 (2256)
++.+.+.+.++ ++.+|..|..+++.+.. ...++.+...+.|+++.||..+..+++.+.. ....+..+
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNV 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchHH
Confidence 44555566554 77788777777665531 2456677777788888888888877766532 11224445
Q ss_pred HHHHHH-hccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1460 lp~Ll~-~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
++.+.+ .+.+.++.+|..++.+|+.+....+. ..+.+++.+...++|+++.||..|+.+|+.++. ...
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~ 160 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KAT 160 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 555553 35677888888888888877654432 224567777777888888888888888876653 135
Q ss_pred HHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1539 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
+|.|...+.|++..+|. ++..+..... .-+..+|.+...+.|.++.+|..++.+++.+..
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------ 221 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------ 221 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhcc-------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------
Confidence 66667777777776663 4555543210 012355666677777777777777777666541
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHH
Q 000098 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 1678 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~a 1678 (2256)
+..++.+...+.|++ +|..++.+++.+.. +..+|.|.+.+.++.+...+..+
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 124555666666643 67777777766532 35666676666654444344333
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-08 Score=142.32 Aligned_cols=537 Identities=12% Similarity=0.107 Sum_probs=303.3
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH--------HHhhcCC
Q 000098 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGY 1126 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~--------~w~~~~~ 1126 (2256)
.++.+++..+++| ++++|++|++.|++.... |........+. ...+.+..+|.+|.. .|..++.
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3577888899998 778899999999876422 21222223322 234556777776543 5665555
Q ss_pred CCCCCh-HhHHHhhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHH
Q 000098 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2256)
Q Consensus 1127 ~~~~~~-~~ll~~l~~-------~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2256)
+.+..+ ..+++++.+ ....+|.+.+++++.++. .||+.|++++..|.+... .+...+.++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~-----------~~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSK-----------QGETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHH-----------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhc-----------CCHHHHHHH
Confidence 544555 677777642 468999999999999985 588889988888887642 122457788
Q ss_pred HHHHHHhhhh-hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhcc----------
Q 000098 1198 ALALHSAADV-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK---------- 1266 (2256)
Q Consensus 1198 ~~aL~~l~~~-~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~---------- 1266 (2256)
..+|..+.+- +..+ +... .|..-+. ..+. +.+..+++.+..++...
T Consensus 154 L~iL~~L~Eev~~~~---------------~~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQ---------------TLPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp HHHHHHHHHHHHTSC---------------CSCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccc---------------chHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888887652 2111 1111 1111110 0111 11223333333333210
Q ss_pred CCC---hhhhhhhhhHHHHHHHHHHhhhccCC--cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC--c-----
Q 000098 1267 ASD---EEKYDLVREGVVIFTGALAKHLAKDD--PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E----- 1334 (2256)
Q Consensus 1267 ~~~---~~~~~~vr~~av~~L~~La~~l~~~~--~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~----- 1334 (2256)
..+ .+.+..++..++.++.......+... ..-..+++.++..+.+ +.++.++.+||..++..... +
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 000 11222455566666554433322100 0001255666655554 45788899999988864421 1
Q ss_pred --h-HHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHhhh-----------CcccchhhcHHHHHHHHHhCCCCH
Q 000098 1335 --A-PTLVSRLLDQLM-------KSDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLADRNSA 1393 (2256)
Q Consensus 1335 --~-~~~l~~Ll~~L~-------~~~~~~vR~~Aa~~L~~lv~~~-----------g~~~~~~~~il~~L~~~l~~~~~~ 1393 (2256)
+ ...+..++..+. .++++..++.-+..+..+...+ ....+ ..+++.+.+...+. +.
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~~-~~ 365 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTHP-SQ 365 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTSS-CH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhCc-cH
Confidence 1 122334555542 1123555655555555443211 01111 26788888887765 55
Q ss_pred HHHHHHHHHHHHHHHHh----ccCchHhHHHHHHHH---HHHcCCC-----------------c-------HHHHHHHHH
Q 000098 1394 KRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQ-----------------V-------VAVREAAEC 1442 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l----~~~~~pyv~~llp~l---l~~l~D~-----------------~-------~~VR~aa~~ 1442 (2256)
.+-..++..|..+.+.. ...+.+++..+++.+ +..+.-+ + ...|....+
T Consensus 366 ~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d 445 (1204)
T 3a6p_A 366 FLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGE 445 (1204)
T ss_dssp HHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHH
Confidence 55656666666555432 123567888888887 3322110 1 134666667
Q ss_pred HHHHHHhhhhHhhHHhHHHHHHHhcc-------------------------CCChhHHHHHHHHHHHHHhhChhhH-hhh
Q 000098 1443 AARAMMSQLSAQGVKLVLPSLLKGLE-------------------------DKAWRTKQSSVQLLGAMAYCAPQQL-SQC 1496 (2256)
Q Consensus 1443 al~~l~~~l~~~~v~~ilp~Ll~~L~-------------------------~~~w~~R~~a~~~Lg~la~~~p~~l-~~~ 1496 (2256)
.++.++...+...+..+.+.+.+.+. +..|....+....++++++.+.... ...
T Consensus 446 ~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~ 525 (1204)
T 3a6p_A 446 VMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREE 525 (1204)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77777766666555555555533322 2346666666677777776653221 123
Q ss_pred hh-hHHHHHHHhh---cCCCHHHHHHHHHHHHHHHhhcCc-h-hHHhHHHHHHhhhCCCCh-hHHHHHHHHHhcccccCC
Q 000098 1497 LP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFVNTV 1569 (2256)
Q Consensus 1497 L~-~Ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~i~~-~-~i~~lv~~Ll~~l~d~~~-~vr~al~~L~~~~~~~~~ 1569 (2256)
++ .++|.+++.+ +..+|.+|.....+++.++..+.. | .+..++..++..+.++.. ..+
T Consensus 526 l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~--------------- 590 (1204)
T 3a6p_A 526 IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK--------------- 590 (1204)
T ss_dssp CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT---------------
T ss_pred ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc---------------
Confidence 33 2445555543 456899999999999999887652 2 345555555554433110 000
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCC---HHHHHHHHHHHHHH
Q 000098 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAIGSL 1646 (2256)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~---~~VR~~a~~aL~~L 1646 (2256)
... .+.+.++|..|+..+..++.. .+..+.||++.+...+..++.... ..-+..-..+++.+
T Consensus 591 ~~~-------------~~~~k~vr~~a~~al~~L~~~--~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i 655 (1204)
T 3a6p_A 591 APR-------------TRAVRNVRRHACSSIIKMCRD--YPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLI 655 (1204)
T ss_dssp SCC-------------CHHHHHHHHHHHHHHHHHHHH--CHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred ccc-------------cHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHH
Confidence 000 001247889999999999984 345688999999998888876443 56666777888888
Q ss_pred HHhhCcC-----chHHHHHHHHHHhhc
Q 000098 1647 IRGMGEE-----NFPDLVSWLLDALKS 1668 (2256)
Q Consensus 1647 ~~~~g~~-----~~~~lip~Ll~~L~~ 1668 (2256)
+..+++. ++..+++.+++.+.+
T Consensus 656 a~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 656 SNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 6655543 455666666666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-05 Score=108.50 Aligned_cols=261 Identities=15% Similarity=0.165 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCc-cchhchHHHHhhhcCCCC
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-~~l~~llp~L~~~l~d~~ 1936 (2256)
..+|..|+-.++-...++.. .+.++.|.+. +.+.+...|..|+.+||.+.-..|. .....++..+.+ +.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--eev~e~L~~~----L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--IEVYEALKEV----LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--HHHHHHHHHH----HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CSC
T ss_pred HHHHHHHHHHHHHHhcCCCC--HHHHHHHHHH----HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cCc
Confidence 45787777788766554432 1333334333 3566677888999999987543332 345555555443 446
Q ss_pred hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccC
Q 000098 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2256)
Q Consensus 1937 ~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~-L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2256)
..+|.+++.+|+-+. .|.. ..++.+... ..+.++.+|..|+.+++.-+-..|.. ..+..|++.+.++
T Consensus 522 e~vrR~aalgLGll~--~g~~-------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d 589 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ-------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG-------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh--CCCh-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccC
Confidence 678888988888552 3321 122333333 34789999999998888665444432 2334444443332
Q ss_pred CchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHh-CCCccccHhhHHHHHHHhh-CCCCHHHHHH
Q 000098 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSL 2093 (2256)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~-g~~l~~~l~~Ilp~Ll~~l-~~~~~~vr~~ 2093 (2256)
... .....|+-+|+.+. |.. ...|.++..+ .+.++.+|..
T Consensus 590 ~~d--------------------------------~VRraAViaLGlI~~g~~------e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 590 SND--------------------------------DVRRAAVIALGFVLLRDY------TTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp SCH--------------------------------HHHHHHHHHHHHHTSSSC------SSHHHHTTTGGGCSCHHHHHH
T ss_pred CcH--------------------------------HHHHHHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHHHH
Confidence 211 01223344444432 431 2345555544 5678999999
Q ss_pred HHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCC--CChHHHH
Q 000098 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVA 2171 (2256)
Q Consensus 2094 a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D--~d~~Vr~ 2171 (2256)
+.-|++.+.... +....+..|.....|.+..+|++|+.++|.+...+.....|.+..+++.|.....| .|..++-
T Consensus 632 AalALGli~aGn---~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 632 TAFALGIACAGK---GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhccCC---CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999887533 23566777777788999999999999999998877777778889999999998876 5677888
Q ss_pred HHHHHHHHh
Q 000098 2172 AAWEALSRV 2180 (2256)
Q Consensus 2172 ~A~~aL~~l 2180 (2256)
.|.-|.|-+
T Consensus 709 ga~iAqGll 717 (963)
T 4ady_A 709 GACVAQGIM 717 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-09 Score=127.56 Aligned_cols=211 Identities=18% Similarity=0.141 Sum_probs=150.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHH
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~ 1381 (2256)
++.++..|.++++.+|..++.+|..+- .+..++.++..+ .++++.+|..|+.+|+.+... .... ..+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~------~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~--~~~~--~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG------GQDAVRLAIEFC-SDKNYIRRDIGAFILGQIKIC--KKCE--DNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCC--TTTH--HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC------CchHHHHHHHHH-cCCCHHHHHHHHHHHHHhccc--cccc--hHHHH
Confidence 467788889999999998888877652 244566666554 566789999999998765321 1111 14556
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp 1461 (2256)
.+.+.+.++.++.+|..++.+++.+....+ .+...++|.+...+.|+++.||..+..+++.+.. ...+|
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~~~ 162 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KATIP 162 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHHHH
Confidence 665443344489999999999888876542 2345678888888999999999998888876532 34678
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHH
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~ 1541 (2256)
.+.+.+.++++.+|..++.+|+.+... -+.+++.+...++|+++.||..|+++|+.++. ...+|.
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------~~~~~~ 227 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------KRVLSV 227 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------GGGHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------HhhHHH
Confidence 888888889999999999999876321 13567788888899999999999999888762 134455
Q ss_pred HHhhhCCC
Q 000098 1542 LLMGLTDP 1549 (2256)
Q Consensus 1542 Ll~~l~d~ 1549 (2256)
|...+.|+
T Consensus 228 L~~~l~d~ 235 (280)
T 1oyz_A 228 LCDELKKN 235 (280)
T ss_dssp HHHHHTSS
T ss_pred HHHHhcCc
Confidence 55555554
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.4e-10 Score=133.25 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py 1417 (2256)
....|+..|++. .|.+|+||+.||.++++..|...... ...++ ..++..+..++ -+.|..|
T Consensus 175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~----------~~~N~-----DLAvRLLCVLA---LDRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQ----------IRVDS-----KLFSKIYEILV---TDKFNDF 235 (800)
T ss_dssp TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CC----------CCCCT-----THHHHHHHHHH---HBCCBBC
T ss_pred HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCcee----------ccccH-----HHHHHHHHHHH---hcccccc
Confidence 566777777765 59999999999999999887533321 01111 22222222221 1234444
Q ss_pred HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1418 VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1418 v~~llp~ll~~l~D-~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
+ +| ....||++|+++++.+ .+++++ ..++-.++..+....|.+|++++..|..+ .++-..
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH
Confidence 3 34 3679999999999999 888876 35566666677889999999999999987 222223
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCCh---hHHHHHHHHHh-cccccCCChh
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND---HTKYSLDILLQ-TTFVNTVDAP 1572 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~---~vr~al~~L~~-~~~~~~~~~~ 1572 (2256)
++.+++.++.+|.|.+.+||..|+.+|..++ ....+..++..+|.++.+-++ .+...++.|.. .++... ..
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~ 371 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LS 371 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cc
Confidence 8999999999999999999999999999988 345688899999988876533 33333444433 111111 11
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHH-HHHhhcCCCHHHHHHHHHHHH
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE-VKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~-L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
..+.++|.+...+++.-+.||.++..++..+. ...+++. +.+++.+++.+++..+.+++.
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11277888888999999999988776654443 1234443 345567888999988888775
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.03 E-value=7.8e-09 Score=140.48 Aligned_cols=296 Identities=16% Similarity=0.270 Sum_probs=221.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhCh--hHHHHHHH
Q 000098 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQ 1737 (2256)
Q Consensus 1662 Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~--~f~~yl~~ 1737 (2256)
+++.+.... ...+..++..++.++..-+.. .-..++..+.+.+.+.... ++++.+++.++...|. .++||+-.
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 444444322 235667777787776643222 1135677777777776555 9999999999977754 78999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000098 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2256)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~-~~~iR~~sv~llg~ll~~~~g~~~~~~~~ 1816 (2256)
++|.++....|....||.+|..|...++..+.+.++..++|.|...+.+. .|..+..++.+++.+....
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~---------- 165 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA---------- 165 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS----------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999999999999999999999999999999999654 6999999999999986210
Q ss_pred CCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHhc
Q 000098 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLA 1895 (2256)
Q Consensus 1817 ~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~ 1895 (2256)
+ ..+.. ...++++.+..+..|...+|..+|..++..++.-.. ..+.+++|.|+..+ .
T Consensus 166 ---------~----~~~~~-----~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~----~ 223 (986)
T 2iw3_A 166 ---------K----DQVAL-----RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI----A 223 (986)
T ss_dssp ---------H----HHHHH-----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH----H
T ss_pred ---------H----HHHHH-----hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh----c
Confidence 1 12222 234778888889999999999999999988877443 56778888877665 5
Q ss_pred CCCHHHHHHHHHHHHHHHH-----hhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC-hhhhHhhHhhHHHH
Q 000098 1896 SSSSERRQVAGRALGELVR-----KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPT 1969 (2256)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~-----~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~-~~~l~~~l~~li~~ 1969 (2256)
+++. .-.|+..+.. .+..+.+.-++|.|.+++.+....+++.++..+..+..-.. +....+|++.++|.
T Consensus 224 ~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~ 298 (986)
T 2iw3_A 224 DPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPG 298 (986)
T ss_dssp CTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHH
T ss_pred Chhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhH
Confidence 6644 2233333332 23344678889999999998877666666666666665443 55678999999999
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHHHhc
Q 000098 1970 IRTALC-DSILEVRESAGLAFSTLFKSAG 1997 (2256)
Q Consensus 1970 l~~~L~-D~~~~VR~~A~~al~~l~~~~g 1997 (2256)
+.+... -.+|++|+.|..|+.++.+..+
T Consensus 299 ~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 299 LKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 988764 5789999999999999987644
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-08 Score=116.18 Aligned_cols=188 Identities=19% Similarity=0.204 Sum_probs=149.8
Q ss_pred hHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHh
Q 000098 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2256)
Q Consensus 1415 ~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~ 1494 (2256)
.++-....+.++..++|+++.+|..|..+++.+.. ...++.+++.+.+.++.+|..++.+|+.+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 44455678888999999999999999999887642 2567888899999999999999999998642
Q ss_pred hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhh
Q 000098 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPS 1573 (2256)
Q Consensus 1495 ~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~ 1573 (2256)
+..++.+...+.|+++.||..|+++|+.++. + ..++.|.+.+.|++..+| .++..++....
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E---RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 3567888889999999999999999998753 2 356777888899988887 46666654211
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2256)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~ 1647 (2256)
...++.+...+.+.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+.
T Consensus 137 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2356788888999999999999988887732 236677788888999999999999988754
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-08 Score=116.76 Aligned_cols=184 Identities=19% Similarity=0.223 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2256)
..++.++..+.|+++.+|..+..+++.+.. ...+|.+++.+.+.++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 345667777888888888888887776532 3456777788888888888888888887642 35
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHH
Q 000098 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2256)
Q Consensus 1500 Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2256)
.++.+...+.|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..|+.... ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------HHHH
Confidence 56777788888888888888888887753 1234555555666665554 24444433110 1234
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1579 p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
+.+.+.+.|.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 445555555555555555555554421 1234444455555555555555555555443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-05 Score=105.85 Aligned_cols=547 Identities=12% Similarity=0.081 Sum_probs=295.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 1456 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v- 1456 (2256)
.++..+...+...++. ....-+.++-.+...++..|.. +.-++..+ +..-..++||..+.-....+.+..+...-
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 5666666666533344 3445566666777777655544 33333332 23556788888887777666655553322
Q ss_pred --HhHHHHHH-HhccCCChhHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhh-
Q 000098 1457 --KLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV- 1529 (2256)
Q Consensus 1457 --~~ilp~Ll-~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L--~~Ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~- 1529 (2256)
..++..++ +.=.+..-..-..++.++.++....|+..+..+ ..+.|.+.+.+ ......+..++.+.|...|..
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 23333222 100111222333345555555555555433221 34566666666 345566777777777766642
Q ss_pred -cCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1530 -IKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1530 -i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
+++-..+..++.|...+.+ +.+| .|+-.|++..........+...+.+.+.+.+.+...+.|+.|.+.+..+..
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-- 363 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-- 363 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC--
Confidence 2111226777888877765 3444 244444442222212233456688888998888776668888888877753
Q ss_pred CCCCcchhh---hhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC-----chHHHHHHHHHHhh-cCCCHHHHHH
Q 000098 1608 TEPKDMIPY---IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALK-SDNSNVERSG 1677 (2256)
Q Consensus 1608 ~~~~~l~~~---l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~-----~~~~lip~Ll~~L~-~~~~~~~R~~ 1677 (2256)
++ ++... -+..++.|..++.+ .+..+...+...+..+....... .+.++.++.-.... .++..... .
T Consensus 364 -~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~ 440 (778)
T 3opb_A 364 -KA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-A 440 (778)
T ss_dssp -SS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-H
T ss_pred -CH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-c
Confidence 22 22221 23457777788874 56677778888888877644321 11222221111100 00000000 0
Q ss_pred HHHHHHH-HHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHH---H
Q 000098 1678 AAQGLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES---V 1753 (2256)
Q Consensus 1678 aa~~L~~-i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~---V 1753 (2256)
....+.+ ....+-. .+.+|.++..+.+.++.+|+.++.++..++..-...-.-.-...+++++..+....+. +
T Consensus 441 ~~~~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~ 517 (778)
T 3opb_A 441 AKEDILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPI 517 (778)
T ss_dssp HHHHHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHH
T ss_pred chHHHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHH
Confidence 0111111 1111111 3578889999999999999999999999985532221112236788999998876544 7
Q ss_pred HHHHHHHHHHHHHHhhccc------hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchH
Q 000098 1754 RDAALGAGHVLVEHYATTS------LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2256)
Q Consensus 1754 R~~Al~al~~iv~~~~~~~------~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e 1827 (2256)
|..|..|+..+.-...+.. ....+|.|.+.+.. .++..+. ...+++.
T Consensus 518 k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~-------------------~~~~~~~----~l~~~~~---- 570 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPR-------------------STPVDDN----PLHNDEQ---- 570 (778)
T ss_dssp HHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCC-------------------SSSCSSC----C---CCC----
T ss_pred HHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCC-------------------CCCcccc----ccccccc----
Confidence 8888888887753221110 00122222221110 0000000 0000000
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCh---hHH-HHHHH--HHHHHHHHHhcCCCHHH
Q 000098 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSER 1901 (2256)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~---~~l-~~~l~--~Ll~~L~~~L~~~~~~~ 1901 (2256)
....-+..|+.++..++.... +.. ..++. ..++.+...+.+.+..+
T Consensus 571 ----------------------------~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~V 622 (778)
T 3opb_A 571 ----------------------------IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622 (778)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHH
T ss_pred ----------------------------ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHH
Confidence 001113344555666665431 222 33443 36677777788899999
Q ss_pred HHHHHHHHHHHHHhhC---ccch----hc---hHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhH--hhHHHH
Q 000098 1902 RQVAGRALGELVRKLG---ERVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPT 1969 (2256)
Q Consensus 1902 R~~A~~aL~~lv~~~~---~~~l----~~---llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l--~~li~~ 1969 (2256)
|..|++++..++..-. ..+. +. =++.|...+...+..+|..++++|+.+...... .....+ ...++.
T Consensus 623 rrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~-ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 623 QRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL-IAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH-HHHHHHHccccHHH
Confidence 9999999999996322 1222 11 167788888888999999999998876432221 111111 246677
Q ss_pred HHHHhcC--CCHHHHHHHHHHHHHHHH
Q 000098 1970 IRTALCD--SILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1970 l~~~L~D--~~~~VR~~A~~al~~l~~ 1994 (2256)
+...+.+ +++++|..+..++..+..
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7777777 899999999999998886
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-06 Score=117.09 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=86.7
Q ss_pred CCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHhhCcc---
Q 000098 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS------------SSSERRQVAGRALGELVRKLGER--- 1919 (2256)
Q Consensus 1855 D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~------------~~~~~R~~A~~aL~~lv~~~~~~--- 1919 (2256)
..+..+|..++..|+.+...... -.++++.+++.++..+.+ .+..+|..|+.++..+++.++..
T Consensus 543 ~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p 621 (1204)
T 3a6p_A 543 TKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP 621 (1204)
T ss_dssp CSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred CCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34567899999988877654321 124666666666665544 23478999999999999988764
Q ss_pred chhchHHHHhhhcCCC---ChhhHHhHHHHHHHHHHhhCh-hhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000098 1920 VLPSIIPILSRGLKDP---SASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2256)
Q Consensus 1920 ~l~~llp~L~~~l~d~---~~~vR~~a~~aL~eii~~~~~-~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~ 1995 (2256)
+++.+...+...+... +...+.....+++.+....++ +....|+..+++.+...+.++ +.+. +......++..
T Consensus 622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~--~~~~-~~s~~~~f~~~ 698 (1204)
T 3a6p_A 622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQ--DMHR-VLSDVDAFIAY 698 (1204)
T ss_dssp GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCH--HHHH-HHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccH--HHHH-hhcCHHHHHHH
Confidence 4555655555544322 345566666777655433333 334556888888888777653 3443 33334455555
Q ss_pred hch
Q 000098 1996 AGM 1998 (2256)
Q Consensus 1996 ~g~ 1998 (2256)
+|.
T Consensus 699 ~G~ 701 (1204)
T 3a6p_A 699 VGT 701 (1204)
T ss_dssp HTS
T ss_pred hCC
Confidence 553
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-08 Score=124.83 Aligned_cols=338 Identities=14% Similarity=0.119 Sum_probs=227.0
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc-Cch-hH-
Q 000098 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNP-EI- 1535 (2256)
Q Consensus 1460 lp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l-~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i-~~~-~i- 1535 (2256)
+|.++..|.++++..+..|+.+|+.++...+..- .-.-...+|.|+.+|.++++.++..|+++|..++..- .+. .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6778888888888899999999999886554321 1222478999999999999999999999999998641 111 12
Q ss_pred -HhHHHHHHhhhC-CCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhh--------cC--------CCHHHHHHH
Q 000098 1536 -ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKKKA 1596 (2256)
Q Consensus 1536 -~~lv~~Ll~~l~-d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L--------~d--------~~~~vR~~a 1596 (2256)
...+|.|++.+. +++..++ .+..+|.................+|.+.+.+ .+ .+..+.+.+
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 456899999998 6666665 4555555432222221212236778888877 22 245667799
Q ss_pred HHHHHHHhhhcCCCCcchhhh--hhhhHHHHHhhcC------CCHHHHHHHHHHHHHHHHh-------------------
Q 000098 1597 AQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRG------------------- 1649 (2256)
Q Consensus 1597 ~~~l~~L~~~l~~~~~l~~~l--~~Ll~~L~~~L~d------~~~~VR~~a~~aL~~L~~~------------------- 1649 (2256)
+.++.+++.. +....... +..++.|..++.+ ++..+.+.+..++..++..
T Consensus 164 ~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 164 TGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 9999999862 22111122 2566777766653 3445666666656555310
Q ss_pred ---------h------------------------CcC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--
Q 000098 1650 ---------M------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-- 1692 (2256)
Q Consensus 1650 ---------~------------------------g~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-- 1692 (2256)
+ |-+ .....++.+...|.+..+...+..++.+|+.++.+-+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0 000 124578888888888777888899999999987644321
Q ss_pred -----HH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH-HHHHHHHHHHhcCCCC------HHHHHHHH
Q 000098 1693 -----YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-LQQVLPAILDGLADEN------ESVRDAAL 1758 (2256)
Q Consensus 1693 -----~l--~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y-l~~ilp~Ll~~L~d~~------~~VR~~Al 1758 (2256)
.+ ...+|.+++.+.+.+..+|..++.++..++.. .+.... -...+|++++.|...+ +.+...++
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 22 35789999999999999999999999999874 333222 2468999999998753 35666777
Q ss_pred HHHHHHHHHhhcc--ch--hchHHHHHhhcCCC-CHHHHHHHHHHHHHH
Q 000098 1759 GAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1759 ~al~~iv~~~~~~--~~--~~llp~L~~~l~d~-~~~iR~~sv~llg~l 1802 (2256)
.++..++..-... .+ ...+|.|.+.+.+. +.+++..+..++..+
T Consensus 399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7777765321110 01 12678888888777 889999998888765
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.6e-06 Score=106.81 Aligned_cols=477 Identities=13% Similarity=0.084 Sum_probs=287.4
Q ss_pred hhcCCCCCCChHhHHHhhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHH
Q 000098 1122 DRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199 (2256)
Q Consensus 1122 ~~~~~~~~~~~~~ll~~l~--~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~ 1199 (2256)
......++. +.-++.++. .....+|..+--.++...+.+++.+.+.+...++...-....+. .. .--..+..
T Consensus 161 ~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~--~~---~~~~~~~~ 234 (778)
T 3opb_A 161 NKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDV--GN---DPLSIIVK 234 (778)
T ss_dssp HHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SS---CHHHHHHH
T ss_pred HHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCC--CC---ccHHHHHH
Confidence 345555543 555677665 56889999999888888888887777766666664331111100 11 12333444
Q ss_pred HHHHhhhhhccC-----ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hhccccccchHHHHHHHhhccCCChhh
Q 000098 1200 ALHSAADVLRTK-----DLPVIMTFLISRALADTNADVRGRMLNAGIMIID--KHGRDNVSLLFPIFENYLNKKASDEEK 1272 (2256)
Q Consensus 1200 aL~~l~~~~~~~-----~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~--~~g~~~~~~Ll~~l~~~L~~~~~~~~~ 1272 (2256)
++..+.++.++- ..+.+.+.+....-..++..+..++++.+...-. ....-..+..+++++..+..
T Consensus 235 ~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~------- 307 (778)
T 3opb_A 235 TLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV------- 307 (778)
T ss_dssp HHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc-------
Confidence 444443332210 0122233333222345667676666665332210 00001123456777766542
Q ss_pred hhhhhhHHHHHHHHHHhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh--cCc---hHHHHHHHHHHHh
Q 000098 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM--QDE---APTLVSRLLDQLM 1347 (2256)
Q Consensus 1273 ~~~vr~~av~~L~~La~~l~~~~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~--~~~---~~~~l~~Ll~~L~ 1347 (2256)
+.+|..+...|.++...-+..+..+..+.+.+...|.+++...++.+.+.|..+-..- ++. ....+..|++.+.
T Consensus 308 -~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk 386 (778)
T 3opb_A 308 -EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIK 386 (778)
T ss_dssp -GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHh
Confidence 2567777777777765433334457788899999999887666777777766553211 111 2455666777665
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcc----------------------------------------cchhhcHHHHHHHHH
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGIS----------------------------------------SLKKYGIAATLREGL 1387 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~----------------------------------------~~~~~~il~~L~~~l 1387 (2256)
...+..+-.+++..|+.+....... .+...++++.+...+
T Consensus 387 ~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll 466 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM 466 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG
T ss_pred CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4334455666666666666532210 000124666666666
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhccCchHhH-H-HHHHHHHHHcCCCcHH---HHHHHHHHHHHHHhhhhHhhH------
Q 000098 1388 ADRNSAKRREGALLAFECLCEKLGRLFEPYV-I-QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQGV------ 1456 (2256)
Q Consensus 1388 ~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~-~llp~ll~~l~D~~~~---VR~aa~~al~~l~~~l~~~~v------ 1456 (2256)
... ++..|+.+..++..++.... ....+ . ..++.++..+.+.... +|..|+.++..+.-...+..+
T Consensus 467 ~S~-s~~~re~A~~aL~nLS~d~~--~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 467 HNL-SPNCKQQVVRIIYNITRSKN--FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp GGS-CHHHHHHHHHHHHHHHTSGG--GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred cCC-CHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 554 78899999999999975422 22222 2 4688888888776544 899999999988754433221
Q ss_pred HhHHHHHHHhccC-CCh-------------hHHHHHHHHHHHHHhhCh---hhHhh-hhh--hHHHHHHHhhcCCCHHHH
Q 000098 1457 KLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLTDTHPKVQ 1516 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~-~~w-------------~~R~~a~~~Lg~la~~~p---~~l~~-~L~--~Ivp~L~~~L~D~~~~VR 1516 (2256)
...+|+|++.|.. ..- ..+..|+.+|..++.... +.... .+. ..+|.+.+++.+.+..||
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 2578899888872 211 237789999999998752 22222 232 588999999999999999
Q ss_pred HHHHHHHHHHHhhcCchh-H-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000098 1517 SAGQTALQQVGSVIKNPE-I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2256)
Q Consensus 1517 ~aA~~aL~~l~~~i~~~~-i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~ 1594 (2256)
++|++++.+++.. +. + +.+ ....+ +.-..-++.+..++...+.++|+
T Consensus 624 rAA~elI~NL~~~---~e~i~~k~-------~~~~~---------------------~~~~~rL~lLV~Ll~s~D~~~r~ 672 (778)
T 3opb_A 624 RSTLELISNMMSH---PLTIAAKF-------FNLEN---------------------PQSLRNFNILVKLLQLSDVESQR 672 (778)
T ss_dssp HHHHHHHHHHHTS---GGGTGGGT-------SCCSS---------------------HHHHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHhCC---cHHHHHHH-------HhhcC---------------------chhhccHHHHHHHHcCCCHHHHH
Confidence 9999999999852 21 1 111 00000 11011246677778888899999
Q ss_pred HHHHHHHHHhhhcCCCCcchhhh--hhhhHHHHHhhcC--CCHHHHHHHHHHHHHHHH
Q 000098 1595 KAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1595 ~a~~~l~~L~~~l~~~~~l~~~l--~~Ll~~L~~~L~d--~~~~VR~~a~~aL~~L~~ 1648 (2256)
.|+.++.++... .+......+ +..++.+..++.+ ++..+|..++.++..+++
T Consensus 673 AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 673 AVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999999988642 211111112 2467777888888 899999999999999997
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-07 Score=118.70 Aligned_cols=344 Identities=13% Similarity=0.093 Sum_probs=222.5
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--cCch-
Q 000098 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP- 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--i~~~- 1533 (2256)
.-+|.+++.|.+.+...+..|+..|..++...++.-.. .-...+|.|+.+|.+.++.|+..|+++|.+++.. -.+.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 34666667777666666666677777777544332111 1136789999999999999999999999999863 1122
Q ss_pred hH--HhHHHHHHhhhCC-CChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhh------------------cCCCHH
Q 000098 1534 EI--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAE 1591 (2256)
Q Consensus 1534 ~i--~~lv~~Ll~~l~d-~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L------------------~d~~~~ 1591 (2256)
.+ ...+|.|+..+.. ++..++ .+..+|.................+|.|.+.+ ...+..
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 22 4578888888875 455554 3333443322211111111222355555543 112578
Q ss_pred HHHHHHHHHHHHhhhcCC-CCcchhhhhhhhHHHHHhhc------CCCHHHHHHHHHHHHHHHHhhC-------------
Q 000098 1592 TKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMG------------- 1651 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~~l~~-~~~l~~~l~~Ll~~L~~~L~------d~~~~VR~~a~~aL~~L~~~~g------------- 1651 (2256)
++..|+.++.+++..-.+ ...+.. ...+++.|...+. +++....+.|+.+|..++....
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 999999999999862101 011111 1344555555543 3566788888888888775421
Q ss_pred --------------cC--chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh------HH--HHHHHHHHHhccC
Q 000098 1652 --------------EE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNCSH 1707 (2256)
Q Consensus 1652 --------------~~--~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~------~l--~~ll~~ll~~l~~ 1707 (2256)
-+ +-+..++.++..|.......++..++.+|..++.+-+.. .+ ...+|.++..+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 00 123567888888876667778999999999887543211 22 4678999999999
Q ss_pred CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHHHHhhc--cch--hc
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYAT--TSL--PL 1775 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~--------~~~VR~~Al~al~~iv~~~~~--~~~--~~ 1775 (2256)
++..++..++.++++++...... ...-...+|.++..|.+. .+.+...|+.++..++..-.. ..+ ..
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g 445 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ 445 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 99999999999999999765443 223457899999999865 367788888888777532110 011 22
Q ss_pred hHHHHHhhcCCC--CHHHHHHHHHHHHHHH
Q 000098 1776 LLPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2256)
Q Consensus 1776 llp~L~~~l~d~--~~~iR~~sv~llg~ll 1803 (2256)
.+|.|.+.+.+. ..+++..+..++..+.
T Consensus 446 ~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 446 GIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 677888777764 6788888888888875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.1e-08 Score=110.77 Aligned_cols=185 Identities=21% Similarity=0.206 Sum_probs=119.8
Q ss_pred HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000098 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 1536 (2256)
+..++.+++.+.+++|.+|..++..|+.+.. +..+|.|...+.|+++.||..|+++|+.++. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 3567778888888899999999988887543 3567778888899999999999999888753 2
Q ss_pred hHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh
Q 000098 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~ 1615 (2256)
..++.|.+.+.|++..+| .++..|..... ...++.+...+.+.++.+|..++.+++.+..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence 345666667777776666 35555543211 1234566666667777777776666666532
Q ss_pred hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~ 1687 (2256)
+..++.|...+.|+++.||..+..+|+.+.. +..++.|.+.+.+ .+..+|..+..+|..+..
T Consensus 142 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAET-GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHH-CCHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhC-CCHHHHHHHHHHHHhcCC
Confidence 1245556666667777777777777766531 4455666555554 445566666666655443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.9e-08 Score=113.21 Aligned_cols=231 Identities=19% Similarity=0.131 Sum_probs=172.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
.+|.++..+.++++.+|..|..++..+....+.. .+ ...+|.+++.+.+.+..+|..++.+|+.++...++.....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3677888899999999999999999998655421 11 3578999999999999999999999999998655432221
Q ss_pred -hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch--hH--HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCC-
Q 000098 1497 -LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 1569 (2256)
Q Consensus 1497 -L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~- 1569 (2256)
-...+|.++.++.++++.||..|+++|..++..-... .+ ...+|.|.+.+.+++..++ .++..+.........
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1368899999999999999999999999998532111 11 4678999999999988776 466666552221100
Q ss_pred -ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1570 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2256)
Q Consensus 1570 -~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~ 1647 (2256)
..-.-...+|.+...+.+.++.+|..++.++++++. ..+...... -...++.+..++.++++.+|..|..+|+.+.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 011123578999999999999999999999999986 222111111 2457889999999999999999999999999
Q ss_pred HhhCcC
Q 000098 1648 RGMGEE 1653 (2256)
Q Consensus 1648 ~~~g~~ 1653 (2256)
...+..
T Consensus 241 ~~~~~~ 246 (252)
T 4hxt_A 241 SGGWLE 246 (252)
T ss_dssp HTCBCC
T ss_pred cCCCcc
Confidence 866544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-07 Score=108.39 Aligned_cols=183 Identities=21% Similarity=0.202 Sum_probs=138.0
Q ss_pred HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000098 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 1536 (2256)
....+.+++.+.+++|.+|..|+..|+.+.. +..++.+.+.+.|+++.||..|+.+|+.++. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~--- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E--- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H---
Confidence 4567888999999999999999999987643 2567788889999999999999999988753 1
Q ss_pred hHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh
Q 000098 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2256)
Q Consensus 1537 ~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~ 1615 (2256)
..++.|.+.+.|++..+| .++..|..... ...++.+...+.+.++.+|..++.+++.+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 456777788888888887 46666654211 1356777778888888898888888877742
Q ss_pred hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1616 ~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i 1685 (2256)
+..++.|...+.|+++.||..+..+|+.+. .+..++.|.+.+.+ .+..+|..+..+|+.+
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-------~~~~~~~L~~~l~d-~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIG-------GERVRAAMEKLAET-GTGFARKVAVNYLETH 196 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHHHHHHHH-CCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 135677778888888889988888888773 24577777777765 5666788777777654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-07 Score=112.10 Aligned_cols=238 Identities=18% Similarity=0.136 Sum_probs=173.9
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 1537 (2256)
.+|.+++.+.++++.+|..|+.+|+.++...++...... ..++|.++.++.++++.||..|+++|..++..- +....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHHHH
Confidence 468888999988899999999999999987764332222 368999999999999999999999999997531 11110
Q ss_pred HHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-h
Q 000098 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-Y 1616 (2256)
Q Consensus 1538 lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~ 1616 (2256)
. + .-...+|.+...+.+.++.+|..++.++++++.. .+..... .
T Consensus 81 ~---------------------~------------~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~ 125 (252)
T 4hxt_A 81 A---------------------I------------VDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIV 125 (252)
T ss_dssp H---------------------H------------HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHHHHHH
T ss_pred H---------------------H------------HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 0 0 0012456677777777888999999999998852 2111111 1
Q ss_pred hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh
Q 000098 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2256)
Q Consensus 1617 l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2256)
-...++.+..++.++++.+|..++.+|+.++...... .-...+|.|.+.+.+ .+..+|..++.+++.++......
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHH
Confidence 2357889999999999999999999999998632111 113488999998886 56779999999999887532211
Q ss_pred --H--HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHH
Q 000098 1693 --Y--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2256)
Q Consensus 1693 --~--l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~y 1734 (2256)
. -.+.++.++..+.++++.+|+.++.+++.++...+..+.+|
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 1 14578999999999999999999999999998776654443
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-08 Score=116.43 Aligned_cols=223 Identities=16% Similarity=0.171 Sum_probs=163.7
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhH-----HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v-----~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
+.+...+.++++.+|..|.+++..+... ..... ...+|.+++.+.+.++.+|..++.+|+.++...++......
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4445566778889999999999776654 22222 35789999999999999999999999999986655432222
Q ss_pred -hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch--hH--HhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCC--
Q 000098 1498 -PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV-- 1569 (2256)
Q Consensus 1498 -~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~-- 1569 (2256)
...+|.++.++.++++.||..|+++|..++..-... .+ ...+|.|.+.+.+++..++ .++..+.........
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 258999999999999999999999999998653322 12 4688999999999888776 466666552221100
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
..-.-..++|.+.+.+.+.++.++..++.++++++. ..+....... ...++.+..++.++++.+|..|..+|+.++.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 000113567889999999999999999999999985 2222222222 3478889999999999999999999987753
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.79 E-value=7.6e-07 Score=115.44 Aligned_cols=339 Identities=13% Similarity=0.110 Sum_probs=223.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--h
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~ 1455 (2256)
++.+.+.+... ++..+..|..++..++..-. .....+ ...+|.++..+.++++.++..|.+++..++..-+.. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566666665 67788888888888874222 122122 246899999999999999999999999998642221 1
Q ss_pred H--HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh--------cC--------CCHHHH
Q 000098 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TD--------THPKVQ 1516 (2256)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L--------~D--------~~~~VR 1516 (2256)
+ ...+|.+++.+. +.+...+..++.+|+.++.+ ++.-.......+|.|+.++ .+ .++.|+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 246899999998 78899999999999999987 3221112237889999988 22 245677
Q ss_pred HHHHHHHHHHHhhcCch--hH---HhHHHHHHhhhCC------CCh-hHHHHHHHHHhcccc------------------
Q 000098 1517 SAGQTALQQVGSVIKNP--EI---ASLVPTLLMGLTD------PND-HTKYSLDILLQTTFV------------------ 1566 (2256)
Q Consensus 1517 ~aA~~aL~~l~~~i~~~--~i---~~lv~~Ll~~l~d------~~~-~vr~al~~L~~~~~~------------------ 1566 (2256)
..|+++|.+++.. ... .+ ...+|.|...+.+ ++. .+..++..+....+.
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999975 211 12 1567777766653 332 233343333221110
Q ss_pred ------------c----------------------CCChhhHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCC
Q 000098 1567 ------------N----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPK 1611 (2256)
Q Consensus 1567 ------------~----------------------~~~~~~l~~i~p~L~~~L~d-~~~~vR~~a~~~l~~L~~~l~~~~ 1611 (2256)
. ....-.....++.+...+.+ .++.++..++.++.+++. ++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~--~~~~ 317 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA--SKGL 317 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--CSSS
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc--CcCc
Confidence 0 00000112345666666654 468999999999999986 2221
Q ss_pred ---cc-hhhh--hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC--chHHHHHHHHHHhhcCCC-----HHHHHHH
Q 000098 1612 ---DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGA 1678 (2256)
Q Consensus 1612 ---~l-~~~l--~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~--~~~~lip~Ll~~L~~~~~-----~~~R~~a 1678 (2256)
.+ .... ...+|.|..++.+++.+++..|+.+|..++..-.-. .-...+|.|.+.|..... ..+...+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 11 1112 367899999999999999999999999998632111 124578889998887432 2355566
Q ss_pred HHHHHHHHHHhcHh--HH--HHHHHHHHHhccCC-CHHHHHHHHHHHHHhH
Q 000098 1679 AQGLSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~--~l--~~ll~~ll~~l~~~-~~~vR~~al~~l~~La 1724 (2256)
+.+++.++..-... .+ .+.++.+...+.+. +..++..++..+..+.
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 67777776543322 22 46788888888888 8999999888887654
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-06 Score=109.62 Aligned_cols=351 Identities=16% Similarity=0.081 Sum_probs=225.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC---ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---cc
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---IS 1372 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~---~~--~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g---~~ 1372 (2256)
-++.|+..|.++++.+|..++.+|..+.....+ .+ ...|+.|+..| .+.+..++..|+.+|..++.+-+ ..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 357888889999999999888888776642211 11 23566677655 45678999999999999986421 12
Q ss_pred cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc------------------CCCcH
Q 000098 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQVV 1434 (2256)
Q Consensus 1373 ~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l------------------~D~~~ 1434 (2256)
.+.....++.|.+.+....+...++.+..++..|+..-. .-...+...+|.+...+ ..++.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 222346788888888765577888888888888876221 11122334566665543 11257
Q ss_pred HHHHHHHHHHHHHHhhhhH--hhH---HhHHHHHHHhccC------CChhHHHHHHHHHHHHHhhChhhH----------
Q 000098 1435 AVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQL---------- 1493 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~R~~a~~~Lg~la~~~p~~l---------- 1493 (2256)
.|++.|..++..++..-+. ..+ .-+++.|+..+.+ .+.+....++.+|..+++......
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999988754321 111 2345566665542 455677778888888876532111
Q ss_pred ---------------hh-hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH
Q 000098 1494 ---------------SQ-CLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2256)
Q Consensus 1494 ---------------~~-~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a 1556 (2256)
.. .-+.+++.++.++. ..++.++++|+++|..++..-. +.-.. .+..
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~-~~~~~---------------~~~~ 350 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW-TYGRY---------------IRSA 350 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS-HHHHH---------------HHHH
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc-cccHH---------------HHHH
Confidence 00 12356777888885 3568899999999988874211 00000 0000
Q ss_pred HHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCC-----
Q 000098 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP----- 1631 (2256)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~----- 1631 (2256)
+ .....+|.|.+++.+.+..+++.++.++.+++... . .-...-...+|.|..+|.++
T Consensus 351 v---------------~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~--~~~~I~~g~ip~LV~LL~~~~~~~~ 412 (584)
T 3l6x_A 351 L---------------RQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-R--NKELIGKHAIPNLVKNLPGGQQNSS 412 (584)
T ss_dssp H---------------TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-S--CHHHHHHHHHHHHHHTSSSSSCSGG
T ss_pred H---------------HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-h--HHHHHHhCCHHHHHHHhcCCccccc
Confidence 0 00134788888898889999999999999998732 2 21223456889999998865
Q ss_pred ---CHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHH
Q 000098 1632 ---IPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLA 1687 (2256)
Q Consensus 1632 ---~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~-~~~~~R~~aa~~L~~i~~ 1687 (2256)
..+++..++.+|+.++..-.+. .-...+|.|.+.+.+. ....++..|+..|..++.
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 4678888888888887421111 1134788888888774 366678888888887764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.4e-08 Score=113.57 Aligned_cols=225 Identities=18% Similarity=0.178 Sum_probs=165.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCch-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccc
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~--~~~ 1374 (2256)
++.+...|.++++++|..++.+|..++....+.. ...++.++..|. +.+..+|..|+.+|+.+..+... ..+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4666667778888899888888866554321111 234566666554 44589999999999999864211 111
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
.....++.+.+.+.++ ++..|+.++.+++.++..........+ ...+|.++..+.++++.+|..+..++..+....+.
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 1235788888888876 799999999999988764332111112 24789999999999999999999999998764332
Q ss_pred hh---H-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1454 QG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1454 ~~---v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
.. + ...+|.+++.+.+.+..+|..++.+|+.++...++...... ..+++.+..++.+.++.||..|+++|.+++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 11 1 45789999999999999999999999999976665433322 3588999999999999999999999998763
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-06 Score=107.10 Aligned_cols=315 Identities=13% Similarity=0.030 Sum_probs=198.3
Q ss_pred cHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHHHhccCchHhHH----HH-------HHHHHHHcCCC---
Q 000098 1378 GIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI----QM-------LPLLLVAFSDQ--- 1432 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~-----------~~~~Re~al~al~~L~~~l~~~~~pyv~----~l-------lp~ll~~l~D~--- 1432 (2256)
..+|.+.+.+.... ++..|..|.+++..|+.+-++....... .+ .+.++..+...
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 45666666666432 3788999999999999876554433211 11 13333333221
Q ss_pred ----cHHHHH-------HHHHHHHHHHhhhhH-hhH--HhHHHHHHHhcc-----------CCChhHHHHHHHHHHHHHh
Q 000098 1433 ----VVAVRE-------AAECAARAMMSQLSA-QGV--KLVLPSLLKGLE-----------DKAWRTKQSSVQLLGAMAY 1487 (2256)
Q Consensus 1433 ----~~~VR~-------aa~~al~~l~~~l~~-~~v--~~ilp~Ll~~L~-----------~~~w~~R~~a~~~Lg~la~ 1487 (2256)
...||+ .|.+++..+...-.- ..+ ...++.++..+. +.+...+..|+.+|..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 112665 677777776432111 111 235666666653 1234568889999999998
Q ss_pred hChhhHhh--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhccc
Q 000098 1488 CAPQQLSQ--CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2256)
Q Consensus 1488 ~~p~~l~~--~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~ 1565 (2256)
..+..-.. .....+|.|+.+|.+.+++|+..|+++|..++.. .++.. +.++.
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~------------------k~~I~------- 283 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNS------------------KKTLR------- 283 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHH------------------HHHHH-------
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHH------------------HHHHH-------
Confidence 76432111 2356799999999999999999999999998742 11111 10000
Q ss_pred ccCCChhhHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh--hhhhhHHHHHhhcCCCH----HHHHH
Q 000098 1566 VNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVRSV 1638 (2256)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~-L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~--l~~Ll~~L~~~L~d~~~----~VR~~ 1638 (2256)
-...+|.+.+. +...++.++..++.++.+++....+.+ ... ....+|.|..++.++.. .+++.
T Consensus 284 --------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~ 353 (458)
T 3nmz_A 284 --------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAIIES 353 (458)
T ss_dssp --------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHH
T ss_pred --------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHHHH
Confidence 01234555554 344567788888888888876211100 111 24578888888886544 48999
Q ss_pred HHHHHHHHHHh--hCcCc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH--hHH--HHHHHHHHHhccC
Q 000098 1639 AARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNCSH 1707 (2256)
Q Consensus 1639 a~~aL~~L~~~--~g~~~-----~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~l--~~ll~~ll~~l~~ 1707 (2256)
+..+|..++.. .+++. -...+|.|++.|.+ .+..++..++.+|+.+...... ..+ ...+|.++..+.+
T Consensus 354 A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 99999998863 12221 12478999999887 4566889999999988742211 122 4678999999999
Q ss_pred CCHHHHHHHHHHHHHhHhhhCh
Q 000098 1708 QRASVRDGYLTLFKYLPRSLGV 1729 (2256)
Q Consensus 1708 ~~~~vR~~al~~l~~La~~~g~ 1729 (2256)
.+..+|+.++.++..++..-..
T Consensus 433 ~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp SSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCHHHHHHHHHHHHHHHcCCHh
Confidence 9999999999999998876443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-06 Score=108.04 Aligned_cols=308 Identities=10% Similarity=0.054 Sum_probs=199.9
Q ss_pred HhHHHHHHHhccCC------------ChhHHHHHHHHHHHHHhhChhhHhhh--------h---hhHHHHHHHhhcCCC-
Q 000098 1457 KLVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQC--------L---PKIVPKLTEVLTDTH- 1512 (2256)
Q Consensus 1457 ~~ilp~Ll~~L~~~------------~w~~R~~a~~~Lg~la~~~p~~l~~~--------L---~~Ivp~L~~~L~D~~- 1512 (2256)
...+|.+++.+... +...|..|..+|..++.+-|++.... + +...+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 35678888888742 25889999999999999987764321 1 111233444444321
Q ss_pred -HH-----HHH-------HHHHHHHHHHhhcCch-hH--HhHHHHHHhhhC----------CC-ChhH-HHHHHHHHhcc
Q 000098 1513 -PK-----VQS-------AGQTALQQVGSVIKNP-EI--ASLVPTLLMGLT----------DP-NDHT-KYSLDILLQTT 1564 (2256)
Q Consensus 1513 -~~-----VR~-------aA~~aL~~l~~~i~~~-~i--~~lv~~Ll~~l~----------d~-~~~v-r~al~~L~~~~ 1564 (2256)
.+ |+. .|.++|++++..-.+. .+ ...++.|...+. +. +..+ +.|...|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 665 7888888886532111 12 345666666652 11 1223 34555554432
Q ss_pred cccCCChhh---HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh--hhhhhHHHHHh-hcCCCHHHHHH
Q 000098 1565 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKV-LVDPIPEVRSV 1638 (2256)
Q Consensus 1565 ~~~~~~~~~---l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~--l~~Ll~~L~~~-L~d~~~~VR~~ 1638 (2256)
+........ ....+|.+.+.+.+.+.+++..++.++.+++. .+....... -...+|.|..+ +...++.+++.
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~--~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW--RADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 222101111 23468999999999999999999999999975 211111111 12567888886 45678999999
Q ss_pred HHHHHHHHHHhhC---cCc--hHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHHHHH--hcHh---HH--HHHHHHHHH
Q 000098 1639 AARAIGSLIRGMG---EEN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTV---YF--EHILPDIIR 1703 (2256)
Q Consensus 1639 a~~aL~~L~~~~g---~~~--~~~lip~Ll~~L~~~~~~---~~R~~aa~~L~~i~~~--~g~~---~l--~~ll~~ll~ 1703 (2256)
++.++..++.... ... ....+|.|.+.|....+. .++..++.+|..+... .+.+ .+ .+.+|.++.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 9999999986321 111 245889999999875432 4677788888877652 2222 11 357899999
Q ss_pred hccCCCHHHHHHHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000098 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2256)
Q Consensus 1704 ~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~ 1767 (2256)
.+.+.+..+++.++.++..++.. .++...++ ...+|+|...+...++.+++.|..++..+...
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999742 22223333 35789999999999999999999999888653
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-05 Score=106.55 Aligned_cols=670 Identities=13% Similarity=0.094 Sum_probs=336.0
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc----CCChhHHHHHHHHHH--HHH
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLG--AMA 1486 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~----~~~w~~R~~a~~~Lg--~la 1486 (2256)
.+.+.-..++.-++...-..-..||..|..++..+++.+++ ....++|.+++.|+ +.+...-+||+.+|. .+.
T Consensus 126 ~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g-s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~ 204 (997)
T 1vsy_5 126 KASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG-SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIH 204 (997)
T ss_dssp CCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHH
T ss_pred CCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhh
Confidence 35555667777777777777899999999999999988753 23566677776664 456666777777655 333
Q ss_pred hhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchh----H-HhHHHHHHhhhCCCChhHHHHHHHHH
Q 000098 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE----I-ASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2256)
Q Consensus 1487 ~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~----i-~~lv~~Ll~~l~d~~~~vr~al~~L~ 1561 (2256)
.....+ -..++.+++.++.+.....|+|+.-+......+...+..|. + ..++ ..+..|++.+..+++...
T Consensus 205 ~~~~~d-~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~~ 279 (997)
T 1vsy_5 205 RKLMTD-YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAVK 279 (997)
T ss_dssp HHGGGC-HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHHH
T ss_pred hHHhcC-hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHHH
Confidence 222222 23567889999998877788988887777777776554331 1 2221 223323222111111110
Q ss_pred h--cccccCCChhhHhhHHHHHHHhh-cCCC--HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHH
Q 000098 1562 Q--TTFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2256)
Q Consensus 1562 ~--~~~~~~~~~~~l~~i~p~L~~~L-~d~~--~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR 1636 (2256)
. ...... -...+..+...+.... .+.. |.....++..+-++.... + .+.-+.++..+.+.+.+++|.+|
T Consensus 280 ~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~----d-~~~~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 280 LAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNL----E-SKPDKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCS----S-CCCCHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC----C-CCCCHHHHHHHHHhhcCCCHHHH
Confidence 0 000000 0001112222222332 2344 777777666655554311 1 34556888899999999999999
Q ss_pred HHHHHHHHHHHHhhCcC-----chHHHHHH--HHHHhh----cCCCHHHHHHHHHHHHHHHHHhcH-h-HHH-H-HHHHH
Q 000098 1637 SVAARAIGSLIRGMGEE-----NFPDLVSW--LLDALK----SDNSNVERSGAAQGLSEVLAALGT-V-YFE-H-ILPDI 1701 (2256)
Q Consensus 1637 ~~a~~aL~~L~~~~g~~-----~~~~lip~--Ll~~L~----~~~~~~~R~~aa~~L~~i~~~~g~-~-~l~-~-ll~~l 1701 (2256)
..|..++..+...+... ..+.+... .-..+. +++..... ...++ +..+. . +++ . ....+
T Consensus 354 ~~a~~~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~-----~~~~~-~~~~~~~yfid~~~~~Gwl 427 (997)
T 1vsy_5 354 HLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKT-----FTEEM-NNFDNPKYFIDLRAYVGWL 427 (997)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHH-----HHHHH-SCCSSCCCBCCSCCCSBTT
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHH-----HHHHH-hcccCCccceeCCCCCeEe
Confidence 99999998888753210 00000000 000000 00111100 00000 00000 0 000 0 00000
Q ss_pred -----HHhcc------CCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----H
Q 000098 1702 -----IRNCS------HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV----E 1766 (2256)
Q Consensus 1702 -----l~~l~------~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv----~ 1766 (2256)
+.... +-++.-+. +...|+ ....+ .++.+++..+.+- ++.++.-+..-...+..++ .
T Consensus 428 ~Wp~~~~vy~p~~~~l~~~~~e~~-i~~~f~---~~~~~---~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~r 499 (997)
T 1vsy_5 428 CWGRLMYVMSPKALKLNLRENELE-VLKTAG---HLLTR---EFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISS 499 (997)
T ss_dssp BCCSEEEEECTTCCCCCCCHHHHH-HHHHHH---TTCCH---HHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTT
T ss_pred eeCCceeEeCCCCCCCCCCHHHHH-HHHHHH---hhcCH---HHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhc
Confidence 00000 01121211 223332 22232 4666666665432 1111111222223333444 4
Q ss_pred HhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHH
Q 000098 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2256)
Q Consensus 1767 ~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl 1846 (2256)
+|++..++.+.|.+++...+++-.-...++++++.++. |...
T Consensus 500 n~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~---gsK~----------------------------------- 541 (997)
T 1vsy_5 500 GFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVC---GSKF----------------------------------- 541 (997)
T ss_dssp TTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSS---CCSS-----------------------------------
T ss_pred ccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh---ccCC-----------------------------------
Confidence 66777778888888876666555455555666655531 1000
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhCccchhchH
Q 000098 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSII 1925 (2256)
Q Consensus 1847 ~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~ll 1925 (2256)
- ........-.-+.+.+.+.+. +-+++.......|+..+......+-.+.++
T Consensus 542 ---------w------------------~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~ 594 (997)
T 1vsy_5 542 ---------M------------------SVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFF 594 (997)
T ss_dssp ---------C------------------CTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHH
T ss_pred ---------C------------------CHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHH
Confidence 0 001111122222233333344 355566666777777777776666666666
Q ss_pred HHHhhh---c--CCCC---hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Q 000098 1926 PILSRG---L--KDPS---ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2256)
Q Consensus 1926 p~L~~~---l--~d~~---~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g 1997 (2256)
..+... + .+.+ ...|..... .++...+-. . +....++..+. +..+...||++-+..+..+....-
T Consensus 595 e~l~~~~~~l~~~~~ssf~~~~rl~ll~---~~l~~~~wr-~-~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 595 CHFINADGMFDRESDAATHQTSKIYMLR---SILMSMEFR-A-PDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp HHHTCCCCCCCCCSSCCCCCCSSHHHHH---HHHHHHTTS-S-CCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHH---HHHHHhccc-c-ccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 666321 1 1111 122333332 233333321 1 11233444444 788899999999998888876431
Q ss_pred hhhHHhHHHHHHHhhccC---------CchHHHHHHHHHHHhh----hc--ccchhhhhhhhhcCchhhhHHHHHHHHHH
Q 000098 1998 MQAIDEIVPTLLHALEDD---------QTSDTALDGLKQILSV----RT--TAVLPHILPKLVHLPLSAFNAHALGALAE 2062 (2256)
Q Consensus 1998 ~~~~~~ilp~Ll~~L~~~---------~~~~~al~~L~~il~~----~~--~~~lp~li~~L~~~p~~~~~~~aL~~La~ 2062 (2256)
...++. +..+++.-.+. .........+.+++.. +. ...-|.- ............++..|..
T Consensus 668 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~---~~~s~y~~~~kTvl~wl~~ 743 (997)
T 1vsy_5 668 NPSISD-PTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQ---FIKTDYFYRTSTIFYWIKE 743 (997)
T ss_dssp CCCBSC-HHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTT---TTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCC-HHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccc---cchHHHHHHHHHHHHHHHH
Confidence 111111 12222221111 0011222222222210 00 0000000 0000000012345566777
Q ss_pred HhCCC----ccccHhh-HHHHHHHhhCCCCH-HHHHH-HHHHHHHHHhhc-chhcHHHHHHHHHhhcC-CCChhhHHHHH
Q 000098 2063 VAGPG----LNFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLVI-DEEGVESLVSELLKGVG-DNQASIRRSSA 2133 (2256)
Q Consensus 2063 ~~g~~----l~~~l~~-Ilp~Ll~~l~~~~~-~vr~~-a~~al~~l~~~~-~~~~~~~ll~~Ll~~l~-~~~~~vR~~A~ 2133 (2256)
.++.. +.++++. ++|.+++..+.++. ++... +..++..+.... ..+.++.++..+.+..+ +.++ .|.+++
T Consensus 744 ~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L 822 (997)
T 1vsy_5 744 MARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQL 822 (997)
T ss_dssp HSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHH
T ss_pred HhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence 77665 6677777 78888776665544 44444 445555554332 44567777777766666 5679 999999
Q ss_pred HHHHHHH-HhchhhhhhhHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHhhccC-C
Q 000098 2134 YLIGYFY-KNSKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-P 2185 (2256)
Q Consensus 2134 ~~l~~l~-~~~~~~~~~y~~~il~~L~~~l~D~d-~~Vr~~A~~aL~~l~~~l-~ 2185 (2256)
..+..|. .+.-.--......+...++.+|.|+. .+||+.|..+|+.+++.. +
T Consensus 823 ~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~ 877 (997)
T 1vsy_5 823 AFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE 877 (997)
T ss_dssp HHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 9987764 33322112233567888888999999 999999999999999877 5
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-06 Score=99.79 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=141.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhh
Q 000098 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2256)
Q Consensus 1421 llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2256)
..|.+...+.++++.+|..|..++..++..-+.. .+ ...+|.+++.+.+.++.+|..|+.+|+.++...+......
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3456667788999999999999999997543322 12 3578999999999999999999999999997665442222
Q ss_pred h-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhH
Q 000098 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1497 L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l 1574 (2256)
+ ...+|.++.++.++++.||..|+++|.+++..- +.. +.++ -
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~----------------------------------~ 136 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVI----------------------------------D 136 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHH----------------------------------H
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHHHHH----------------------------------H
Confidence 2 368899999999999999999999999998531 111 1000 0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh-hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~-~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~ 1648 (2256)
...+|.+.+.+.+.++.+|..++.++.+++.. .+..... .-...++.|..++.++++.+|+.|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13567777777777889999999999999862 2111111 123578899999999999999999999998763
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.5e-07 Score=101.60 Aligned_cols=187 Identities=20% Similarity=0.175 Sum_probs=140.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH
Q 000098 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV 1418 (2256)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~--~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv 1418 (2256)
..+..|.+++++.+|..|+.+|+.+...... ..+.....++.+.+.+.+. ++..|+.++.+++.++..........+
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3444555677899999999999998854321 1112236788888888876 899999999999988743221111111
Q ss_pred -HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1419 -IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1419 -~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
...+|.++..+.++++.+|..+..++..++...+.. .+ ...+|.+++.+.+.+..+|..++.+|+.++...++..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 236899999999999999999999999987543322 11 3578999999999999999999999999998765543
Q ss_pred hhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1494 SQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1494 ~~~-L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
... -...++.+.+++.+.++.||..|+++|..+++
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 222 23688999999999999999999999999864
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-05 Score=80.68 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh
Q 000098 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2256)
Q Consensus 1338 ~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py 1417 (2256)
.+..++..| +++-|.+|+.|...+..+++..+.-.- +++..+.-++..+.....-++.-.+||.++..-+ ..
T Consensus 33 ~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~ 104 (253)
T 2db0_A 33 VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----EL 104 (253)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HH
T ss_pred HHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HH
Confidence 334444333 334466666666666666665432111 3344444443322222333334455666655433 23
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1418 v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
+..++|.++....-.++..|-....+++.++...+ .....+...+...+.+++-.-|..++..++.+.+..++...+
T Consensus 105 v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~P-- 181 (253)
T 2db0_A 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP-- 181 (253)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGG--
T ss_pred HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCc--
Confidence 55677788777666678888878888888887654 334566667777888888888889999999888777666554
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH
Q 000098 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr 1554 (2256)
.+|.+..+|.|.+.-||..|.++|..++.. +|.+..++..-++-+.|+++.+.
T Consensus 182 --fLprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~ 234 (253)
T 2db0_A 182 --FLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVN 234 (253)
T ss_dssp --GHHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHH
T ss_pred --chHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHH
Confidence 466778899999999999999999999875 56688888888888899887553
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-06 Score=98.00 Aligned_cols=174 Identities=14% Similarity=0.091 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhc---cCchHh-HHHHH
Q 000098 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA---DRNSAKRREGALLAFECLCEKLG---RLFEPY-VIQML 1422 (2256)
Q Consensus 1350 ~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~---~~~~~~~Re~al~al~~L~~~l~---~~~~py-v~~ll 1422 (2256)
.++..|..|...|...+........ ..++.+.+.+. -+.|..+-..++..+..+.+.++ ..+.+| ...++
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3577777777777666554221111 22333344332 13488888888888888877664 346777 57899
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHH-
Q 000098 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV- 1501 (2256)
Q Consensus 1423 p~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Iv- 1501 (2256)
|.++..+||+.+.||+.+.+.+..+...+++ ..+++.+.+++.+++||+|.+++..++.+....+-.. ...+
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~ 207 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS 207 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence 9999999999999999999999888765543 4577888899999999999999999999987654332 2345
Q ss_pred --HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1502 --PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1502 --p~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
|.+..+++|++..||.+|..++..+-...++.
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88899999999999999999999888777654
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=105.39 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=142.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHH
Q 000098 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2256)
Q Consensus 1780 L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2256)
+.+.+.+.+|+.|.++++-+..++....... .+++. .. .+......+...+.|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~-----~~~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQ-----IYWRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------C-----CTTSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HH-----HHHHHHHHHHHHhccchHH
Confidence 6678899999999999998887763211100 00000 00 0112223344557899999
Q ss_pred HHHHHHHHHHHHHhcCh------hHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhc
Q 000098 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2256)
Q Consensus 1860 Vr~aA~~~l~~l~~~~~------~~l~~~l~~Ll~~L~~~-L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l 1932 (2256)
|...++.++..++...+ .....++..+++.++.. +++....+|..+..++-.++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999887543 34556777778877754 7899999999999999888875443 244566677788
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhhh--HhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh
Q 000098 1933 KDPSASRRQGVCIGLSEVMASAGKSQL--LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2256)
Q Consensus 1933 ~d~~~~vR~~a~~aL~eii~~~~~~~l--~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~ 1999 (2256)
...+|.+|.+++.+|..++...|.... .+.++.+++.+..++.|++++||.+|..+++.++..+|..
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 888999999999999999998876533 4556778888889999999999999999999999988853
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-05 Score=79.94 Aligned_cols=215 Identities=20% Similarity=0.173 Sum_probs=169.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhc
Q 000098 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2256)
Q Consensus 1299 ~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~ 1378 (2256)
+.+++.++..|.|.-|.||..+...+..+.....+-....+..|+..+.+++....-...+.++|.+++.- ++.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-HHHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-HHHHH--h
Confidence 56789999999999999999888888888877777677888888888888887766677788888888754 33333 6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
++|.+..+..-. +++.|-+.-.+++.++...+.. +..+..-+...+.+++..-|-++..-++.+..+ +...+.+
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-CccccCc
Confidence 788888887666 7899999889999998876543 344555566677888887787776666555433 2244678
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2256)
++|.++..+.|++--+|..+++.|+.+|...|+ +..++..-++-++|++..|......+|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998776 3455666677799999999999999998875
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00019 Score=99.64 Aligned_cols=696 Identities=11% Similarity=0.048 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhC---CCCHHHHHHHHHHHH--HHHHHh
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFE--CLCEKL 1410 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~---~~~~~~Re~al~al~--~L~~~l 1410 (2256)
..++..+++ |..+.=..+|+.|..+|...++.+.... ..++|.+.+.++. +.+...-+||+..+. .+....
T Consensus 132 ~~ll~dL~~-Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~---~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~ 207 (997)
T 1vsy_5 132 NLLLVDIIQ-LATSLYPDIYKPAQGTLVHCMKQLVGSY---GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKL 207 (997)
T ss_dssp HHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHTTBTTHH---HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHG
T ss_pred HHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHH
Confidence 455555555 4455557899999999988887763222 2566666666544 345666778877655 333333
Q ss_pred ccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH-------------------------------------
Q 000098 1411 GRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------------------------- 1453 (2256)
Q Consensus 1411 ~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~------------------------------------- 1453 (2256)
... -.++..+++.++.+...+.+.|...+..+...++.....
T Consensus 208 ~~d-~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 208 MTD-YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGC-HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred hcC-hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 221 134677888888887666666666655554444431100
Q ss_pred hhH----HhHHHHHHHhc-cCCC--hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1454 QGV----KLVLPSLLKGL-EDKA--WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2256)
Q Consensus 1454 ~~v----~~ilp~Ll~~L-~~~~--w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2256)
... ..+...+++.. .+.. |+....++..+-.+...... ..=++++..+.+.+.|+||.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 001 12223333443 3456 99988877664444422211 11246788889999999999999999999777
Q ss_pred HhhcCchh-----HHhHH-----HHHHhhhCCCCh-hHHHHHHHHHh---cc-cccCC------C---------------
Q 000098 1527 GSVIKNPE-----IASLV-----PTLLMGLTDPND-HTKYSLDILLQ---TT-FVNTV------D--------------- 1570 (2256)
Q Consensus 1527 ~~~i~~~~-----i~~lv-----~~Ll~~l~d~~~-~vr~al~~L~~---~~-~~~~~------~--------------- 1570 (2256)
...+.... +..+. |.-.....++++ ....-.+.+.+ .. |+... .
T Consensus 364 l~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l 443 (997)
T 1vsy_5 364 CNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKL 443 (997)
T ss_dssp HHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCC
T ss_pred HHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCC
Confidence 65532100 00000 000000000110 11111111111 11 21100 0
Q ss_pred --hhhHhhHHHHHH------------Hh-hcCCC--HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCH
Q 000098 1571 --APSLALLVPIVH------------RG-LRERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633 (2256)
Q Consensus 1571 --~~~l~~i~p~L~------------~~-L~d~~--~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~ 1633 (2256)
.+.-..++..+. .. .+|.. ..-+..-+..+..+..++..... ...++.+.+.+..+..|.+.
T Consensus 444 ~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~-~~~l~~l~~~~e~L~~~~dk 522 (997)
T 1vsy_5 444 NLRENELEVLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFC-ELNMSDLFELCESYYNKDDK 522 (997)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTC-CCCGGGHHHHHHHTCCSSCH
T ss_pred CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHhccccH
Confidence 000011111111 01 11110 00011222334444432211000 12466677788888888888
Q ss_pred HHHHHHHHHHHHHHHhhCc---C----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHH--Hh
Q 000098 1634 EVRSVAARAIGSLIRGMGE---E----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDII--RN 1704 (2256)
Q Consensus 1634 ~VR~~a~~aL~~L~~~~g~---~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll--~~ 1704 (2256)
.-+..+++.++.+..+... + ..+-+.|.+...+.++-.++....=..++.-+....+...+..++..++ +.
T Consensus 523 ~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~ 602 (997)
T 1vsy_5 523 ASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADG 602 (997)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhc
Confidence 8888999999888765421 1 2234666666666632222222111223444445555556677777663 21
Q ss_pred c---cCCC---HHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchh---c
Q 000098 1705 C---SHQR---ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP---L 1775 (2256)
Q Consensus 1705 l---~~~~---~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~---~ 1775 (2256)
. .+.+ ...|-. ++..+....|-.+.. .+.++..++ +.++...||+.....+..+....-...++ .
T Consensus 603 ~l~~~~~ssf~~~~rl~---ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~ 676 (997)
T 1vsy_5 603 MFDRESDAATHQTSKIY---MLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTT 676 (997)
T ss_dssp CCCCCSSCCCCCCSSHH---HHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHH
T ss_pred ccCCCCCcHHHHHHHHH---HHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHH
Confidence 1 1111 112222 222222222222211 234444444 78888999998888887776543111111 1
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHH---HHhcchhhHHHHHHHHHH
Q 000098 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII---EVLGRDKRNEVLAALYMV 1852 (2256)
Q Consensus 1776 llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~---~~Lg~e~~~~vl~~L~~~ 1852 (2256)
++...... +..+ + ..... .+......+. +.+...+.+ + ..
T Consensus 677 ~l~~~~~~--~~~~---------------------~------~~~~~--~~~~~~~~i~~~f~~l~~~~~~-~-----~~ 719 (997)
T 1vsy_5 677 LLEAERND--PDGL---------------------G------LPLKS--VPEKVDAYIKKQFEIIKNLEDS-V-----VG 719 (997)
T ss_dssp HHHHHHSC--SSSS---------------------C------CCSSC--CCHHHHHHHHHHHHHHTGGGGT-T-----SS
T ss_pred HHHhhccc--cccc---------------------c------Ccccc--CcchHHHHHHHHHHHHHHhhhc-c-----cc
Confidence 11111100 0000 0 00000 0000000010 111000000 0 00
Q ss_pred hcC----CcH--HHHHHHHHHHHHHH-hcChhHHHHHHHH-HHHHHHHHhcCCCH-HHHHH-HHHHHHHHHHh-hCccch
Q 000098 1853 RSD----VSL--SVRQAALHVWKTIV-ANTPKTLKEIMPV-LMNTLISSLASSSS-ERRQV-AGRALGELVRK-LGERVL 1921 (2256)
Q Consensus 1853 ~~D----~~~--~Vr~aA~~~l~~l~-~~~~~~l~~~l~~-Ll~~L~~~L~~~~~-~~R~~-A~~aL~~lv~~-~~~~~l 1921 (2256)
+.. .+. ..-.+.+..+.... ......+.++++. ++|.+.+.....+. +.... +..++..+... +....+
T Consensus 720 ~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~ 799 (997)
T 1vsy_5 720 LNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHV 799 (997)
T ss_dssp CCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHH
Confidence 000 000 01111121111111 1112235566665 66666544444433 33333 33444443321 122345
Q ss_pred hchHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhch-
Q 000098 1922 PSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGM- 1998 (2256)
Q Consensus 1922 ~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~-~~VR~~A~~al~~l~~~~g~- 1998 (2256)
+.++..+.+... +++. .|..++.-+..+.-..---........+...+..+|.|+. .+||+.|+.+++.+....+.
T Consensus 800 ~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~ 878 (997)
T 1vsy_5 800 AAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE 878 (997)
T ss_dssp HHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH
T ss_pred HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch
Confidence 666666666555 4566 8888776544333211000001112467888888999999 99999999999999875413
Q ss_pred hhHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCc--cccHhhHH
Q 000098 1999 QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGL--NFHLGTIL 2076 (2256)
Q Consensus 1999 ~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l--~~~l~~Il 2076 (2256)
...++++..+.+.+........ +...- .... ...+...-+|+++...+.-.+ -+++|.++
T Consensus 879 ~~~~~li~~f~~~~~~~~~~~~----~~~~~---~~~~-----------~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l 940 (997)
T 1vsy_5 879 QPLLSLIERFAKGLDVNKYTSK----ERQKL---SKTD-----------IKIHGNVLGLGAIISAFPYVFPLPPWIPKNL 940 (997)
T ss_dssp HHHHHHHHHHTTSSTTTSSCHH----HHHHH---HHHC-----------HHHHHHHHHHHHHHTTCSCCSSCCTHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcccccc----ccccc---chHH-----------HHHHHHHHHHHHHHhhCCCCCCCCcccHHHH
Confidence 4444455544443322000000 00000 0000 001122334555555555554 56788888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 000098 2077 PALLSAMGDDDMDVQSLAKEAAETVTL 2103 (2256)
Q Consensus 2077 p~Ll~~l~~~~~~vr~~a~~al~~l~~ 2103 (2256)
..|.+...++. .++..+.++++++-.
T Consensus 941 ~~La~~~~~~~-~i~~tvk~tlseFkr 966 (997)
T 1vsy_5 941 SNLSSWARTSG-MTGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHTTSSSCS-SHHHHTHHHHHHHHH
T ss_pred HHHHHHhCCCC-chHHHHHHHHHHHHh
Confidence 77777777644 488888888888765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-05 Score=91.70 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=142.3
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc-------hh
Q 000098 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-------PE 1534 (2256)
Q Consensus 1462 ~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~-------~~ 1534 (2256)
.+...+.+.+|+.|..+++.|.......++.+...++-+++-+.-.+.|+++.|-..+...|..+...+.. .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 34456677899999999999999888888777777666666555567799999999999999988765532 23
Q ss_pred HHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch
Q 000098 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2256)
Q Consensus 1535 i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~ 1614 (2256)
...++|.|+..+.|+.+.+|+....+...-. . ......+.+.+..++++++|++|..++..++.+....+-+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~--~--v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS--D--VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH--H--HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--H--HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 4789999999999999988865544432100 0 0123457888888999999999999999999998765432
Q ss_pred hhhhhhh---HHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc
Q 000098 1615 PYIGLLL---PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2256)
Q Consensus 1615 ~~l~~Ll---~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~ 1654 (2256)
+ ...+ |.+..++.|++..||.+|..++..+....|+..
T Consensus 202 ~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 2 3467 899999999999999999999999999998763
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.1e-05 Score=92.09 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHhccCchHh-HHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhc
Q 000098 1394 KRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL 1467 (2256)
Q Consensus 1394 ~~Re~al~al~~L~~~l~~~~~py-v~~llp~ll~-~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L 1467 (2256)
..|..|+..|..+++..+. -..+ -...+|.++. .+.++++.||..|+++++.++..-+.. .+ ...+|.|+..+
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4677777777777664331 1111 1246788888 999999999999999999998764432 12 35789999998
Q ss_pred cC-CChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1468 ~~-~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.+ .+..+|..|+.+|+.++.+.+....... ...+|.|+.+|.+.++.|+..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 84 5788999999999999988766443332 36899999999999999999999999999875
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.9e-05 Score=95.04 Aligned_cols=185 Identities=11% Similarity=0.120 Sum_probs=137.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhCcccch------hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000098 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLK------KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR----- 1412 (2256)
Q Consensus 1344 ~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~------~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~----- 1412 (2256)
+.| .+.+|..|..|...|..++......... ...+.+.+...+.|. |..+.+.++.++..++..++.
T Consensus 16 e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 16 ERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred Hhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 444 5667999999999998888754322111 124556666777665 899999999999999886552
Q ss_pred -CchHhHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhCh
Q 000098 1413 -LFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2256)
Q Consensus 1413 -~~~pyv~~llp~ll~~-l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p 1490 (2256)
.+..++..++|.++.. ++|....+|..+..++..++..... ...+++.+..++.+++|++|.+++..|..+....+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence 2455677889988875 8999999999998888877654322 24466777889999999999999999998886533
Q ss_pred hh---HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000098 1491 QQ---LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1491 ~~---l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
.. ....++.+++.+..++.|+++.||.+|...+..+...++.
T Consensus 172 ~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 172 LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 21 3345667888888899999999999999999999888764
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-05 Score=94.14 Aligned_cols=226 Identities=16% Similarity=0.117 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHHHHHhccCchHhH---HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHH
Q 000098 1392 SAKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSL 1463 (2256)
Q Consensus 1392 ~~~~Re~al~al~~L~~~l~~~~~pyv---~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~L 1463 (2256)
+...++.|..++..|+..-.. ....+ ..++|.++..+..+++.+++.|..++..+...-.. ..+ ...+|.+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 356777888888888643221 12222 35699999999999999999999999999753111 222 2468899
Q ss_pred HHhc-cCCChhHHHHHHHHHHHHHhhChhh-Hhhh-hhhHHHHHHHhhcCCCH----HHHHHHHHHHHHHHhhc-CchhH
Q 000098 1464 LKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVI-KNPEI 1535 (2256)
Q Consensus 1464 l~~L-~~~~w~~R~~a~~~Lg~la~~~p~~-l~~~-L~~Ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~i-~~~~i 1535 (2256)
++.+ .+.+...+..++.+|..++...++. ..-. -...+|.|+.++.+.++ +|+..|+++|..++..+ +++..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 8875 5678899999999999999855432 1111 25789999999987654 59999999999998532 11211
Q ss_pred HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh
Q 000098 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~ 1615 (2256)
.. .+. -...+|.+.+.+.+.+..++..|+.++.+++. +++.....
T Consensus 256 ~~---------------------~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~ 300 (354)
T 3nmw_A 256 RQ---------------------ILR------------ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEA 300 (354)
T ss_dssp HH---------------------HHH------------TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHH
T ss_pred HH---------------------HHH------------HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 10 000 01256777777888888899999999999974 22221111
Q ss_pred h-hhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC
Q 000098 1616 Y-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2256)
Q Consensus 1616 ~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~ 1653 (2256)
. -...+|.|..++.+++..+|+.|..+|..++..-+..
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1 1356899999999999999999999999999764433
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.5e-05 Score=94.31 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=153.6
Q ss_pred CHHHHHHHHHhhHHhHHhhc---Cch---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---ccchhhcHHHHH
Q 000098 1313 SEAVQRAVSSCLSPLMQSMQ---DEA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATL 1383 (2256)
Q Consensus 1313 ~~~Vq~~~~~~L~~lv~~~~---~~~---~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~---~~~~~~~il~~L 1383 (2256)
++.+|+.++.+|..+...-. ..+ ...++.|+..|. +++..++..|+.+|..+...-.. ..+.....++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 35688888888877753221 111 344777776554 56689999999999999764111 122233677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH--HHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHhhh--hHhh
Q 000098 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQG 1455 (2256)
Q Consensus 1384 ~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv--~~llp~ll~~l~D~~~----~VR~aa~~al~~l~~~l--~~~~ 1455 (2256)
.+.+....+...++.+..++..|+....+.-...+ ...+|.+...+.+.++ .+++.+..++..+...+ .++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88754444788888888888888763321112222 3578888888876544 58888888998887531 1222
Q ss_pred ---H--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
+ ...+|.+++.+.+.+..++..|+.+|+.++...+++..... ...+|.|+.++.+.++.+|..|+++|.+++..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2 24689999999999999999999999999976665432222 36899999999999999999999999999976
Q ss_pred c
Q 000098 1530 I 1530 (2256)
Q Consensus 1530 i 1530 (2256)
-
T Consensus 336 ~ 336 (354)
T 3nmw_A 336 R 336 (354)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-05 Score=91.00 Aligned_cols=175 Identities=18% Similarity=0.136 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHhhhCcc-cchhhcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH--HHHHHHHHH
Q 000098 1353 GERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2256)
Q Consensus 1353 ~vR~~Aa~~L~~lv~~~g~~-~~~~~~il~~L~~-~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~--~llp~ll~~ 1428 (2256)
..|..|...|..++...... .+.....++.+.+ .+.+. ++.+|+.|+++++.++..... ...++. ..+|.++..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 45666666666666543210 1112245666666 66654 899999999999999864332 222222 478888888
Q ss_pred cC-CCcHHHHHHHHHHHHHHHhhhhH--hhH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhh-hhHHH
Q 000098 1429 FS-DQVVAVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2256)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~l~~~l~~--~~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L-~~Ivp 1502 (2256)
+. +++..+|..|.+++..++...++ ..+ ...+|.++..+.+.+.+++..|+.+|+.++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 56889999999999999875543 223 35789999999999999999999999999988665433222 36899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
.|+.+|.++++.||..|+.+|++++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-06 Score=118.38 Aligned_cols=220 Identities=15% Similarity=0.057 Sum_probs=122.1
Q ss_pred hchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhH
Q 000098 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2256)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~ 2001 (2256)
..++|.+.. ++++++..|.++|.+|++++.......+.-+.+.+.+.+..++.|++.+||.+|+.+|..++...|.+..
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 467776654 7888999999999999999864322222222233455667789999999999999999999987777655
Q ss_pred Hh-----HHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccH-hhH
Q 000098 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTI 2075 (2256)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l-~~I 2075 (2256)
+. ++|.|+..|+...............+....+..++.+.+ ....+|.+|++.....+.... ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITG---------SLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHhccc
Confidence 44 788888777542110000000000000000111111111 122344444443322222111 245
Q ss_pred HHHHHHhhC---CCCHHHHHHHHHHHHHHHhhcc-------hhcHHHHHHHHHhhcCCCChhhHHHHHHHHHH-HHHhch
Q 000098 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGY-FYKNSK 2144 (2256)
Q Consensus 2076 lp~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~-------~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~-l~~~~~ 2144 (2256)
+|.++..+. ....+++..+..|+..+...-. .++...++..++...++.++..+ .++..+.. ++....
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~-la~giL~Ni~~~~~~ 262 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAV-MACGVLHNVFTSLQW 262 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHH-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHH-HHHHHHHhHhhhhhh
Confidence 566666552 2346899999999998876321 12333455666665566555544 44554444 444444
Q ss_pred hhhhhhHH
Q 000098 2145 LYLVDEAP 2152 (2256)
Q Consensus 2145 ~~~~~y~~ 2152 (2256)
.++.+|..
T Consensus 263 ~d~s~~~~ 270 (684)
T 4gmo_A 263 MDHSPGKD 270 (684)
T ss_dssp BTTBCCGG
T ss_pred hhcchhhH
Confidence 55555543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00085 Score=73.92 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----hccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCc
Q 000098 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2256)
Q Consensus 1736 ~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~----~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~ 1811 (2256)
+..+..+...+.|.++.++..++.+++.+.+.. ....+..++|.+.+...+++.++-..|+++++.++...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v----- 106 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV----- 106 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----
Confidence 346677888999999999999999999998874 33346779999999999999999999999999997211
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 000098 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2256)
Q Consensus 1812 ~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~ 1891 (2256)
. ++++.+..+..++.....+.+.-++..++..++.+ .-+ ...+.+++.+.
T Consensus 107 -----------p-------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~-----~~~~~V~~~l~ 156 (265)
T 3b2a_A 107 -----------P-------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL-----EDSKLVRTYIN 156 (265)
T ss_dssp -----------C-------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS-----CCCHHHHHHHH
T ss_pred -----------C-------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc-----cchHHHHHHHH
Confidence 0 22334455666666677777888899999998876 211 23455666666
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHH
Q 000098 1892 SSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2256)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l 1970 (2256)
+.+.+.+..++.++..+|-++....++. .+..++.-+-..++.+++..+..+...+-+++..-=.+.+.+-+..+...+
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v 236 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIV 236 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHH
Confidence 6678999999999999999998877654 677777777778888899999888887777664422222222233333333
Q ss_pred HHHh-cCCCHHHHHHHHH
Q 000098 1971 RTAL-CDSILEVRESAGL 1987 (2256)
Q Consensus 1971 ~~~L-~D~~~~VR~~A~~ 1987 (2256)
.... ....|.+|..|..
T Consensus 237 ~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 237 DGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp HHGGGCSSCHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHH
Confidence 3333 4667778776643
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.2e-05 Score=90.71 Aligned_cols=278 Identities=14% Similarity=0.107 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHh
Q 000098 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2256)
Q Consensus 1885 ~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~ 1964 (2256)
.++..+++.+.+++...|...--.+..+.+. .+..+ -+...+.+-++++++-.|-.+..+++.+.. + ..++
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~----~m~~ 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---S----TMLQ 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---T----TTHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---H----HHHH
Confidence 4555666778899999888888887766554 33333 445566666778888888888888776632 2 2346
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCc--hHHHHHHHHHHHhhhcccchhhhhh
Q 000098 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILP 2042 (2256)
Q Consensus 1965 ~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~~lp~li~ 2042 (2256)
.+.+.+.+++.|.++-||.+|+-+...++.. .++.+..+++.+-+.+.+.+- .-+++..+.++... ....+..+++
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kLv~ 216 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKMIS 216 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHHHH
Confidence 6888899999999999999999888877653 455566677777777766542 12455555555432 2234556667
Q ss_pred hhhcCchh--hhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhh
Q 000098 2043 KLVHLPLS--AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2256)
Q Consensus 2043 ~L~~~p~~--~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~ 2120 (2256)
.+...++. ......+..+.......-......+++.+...+++.++.+...+.+++-.+-. .+........+.|...
T Consensus 217 ~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~f 295 (355)
T 3tjz_B 217 KFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLF 295 (355)
T ss_dssp HHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHH
T ss_pred HHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHH
Confidence 66554321 12233444433222111112335677777777888888887777766666533 2222223334455556
Q ss_pred cCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 000098 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178 (2256)
Q Consensus 2121 l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~ 2178 (2256)
+.++++.+|-.|+..+..+.+..+..+..+ -..+..++.|+|..++.-|..+|-
T Consensus 296 Lss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 296 CSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp HHSSSSSSHHHHHHCC------------------------------------------
T ss_pred HcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHhh
Confidence 678889999999999999988665544443 445668889999888777776653
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.01 Score=76.32 Aligned_cols=174 Identities=19% Similarity=0.226 Sum_probs=115.8
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcc
Q 000098 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGR 1412 (2256)
Q Consensus 1334 ~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~-~~~~~Re~al~al~~L~~~l~~ 1412 (2256)
...+.++.|.+.+.++.-...||.|..+|.++.+........ .-++.+...++++ .|...-..++..+..+ +.
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l---~~- 91 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNI---IS- 91 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHH---HC-
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHH---hC-
Confidence 457889999999999888999999999999998876433222 3455666666543 3443333333322221 11
Q ss_pred CchHhHHHHHHHHHHHcCCCcHH--------HHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHH
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVA--------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~--------VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~ 1484 (2256)
.|+++. ..+.+.+-.+.+.+. +.-++.++..+++.+..+|..++++|..
T Consensus 92 -----------------~~~~~~~~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL~~ 148 (651)
T 3grl_A 92 -----------------NDEEEEVEENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLLTS 148 (651)
T ss_dssp -----------------CC--------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred -----------------CCCcccccccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111110 011111111222111 3567889999999999999999999999
Q ss_pred HHhhChhhHhhhh---hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1485 MAYCAPQQLSQCL---PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1485 la~~~p~~l~~~L---~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
++...|+....++ |.-++.|+.+|.|++..+|..+...|..+++. +++++.+
T Consensus 149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~--n~~iQkl 203 (651)
T 3grl_A 149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS--NGAIQKI 203 (651)
T ss_dssp HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 9999988655543 46889999999999999999999999999874 4555433
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00076 Score=82.22 Aligned_cols=275 Identities=11% Similarity=0.069 Sum_probs=150.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhh
Q 000098 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
..+++.+++++..++...|+-+.-.+..+++. . ++.--.+..+.+-+++|++.+|. |+..++... +......
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~-----~~~m~~~ 139 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT-----DSTMLQA 139 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CTTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC-----CHHHHHH
Confidence 36777788899999999999999999988876 2 33336778889999999999984 888887632 2234567
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchH
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~ 1656 (2256)
+.+.+.+.+.|+++.||+.|+-+...+... .++ ....+++.+..++.|.++.|...|..++..+... + .
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~---d--~ 208 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN---D--R 208 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT---C--H
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh---c--h
Confidence 888899999999999999999888877652 222 3446788889999999999998777777766542 1 1
Q ss_pred HHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1657 DLVSWLLDALKSDN--SNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1657 ~lip~Ll~~L~~~~--~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
..+..+...+.... ++..... +-.++..++.+ .-..+++.+...+++.++.|--.++.++..+......
T Consensus 209 ~a~~kLv~~l~~~~l~~~~~q~~----llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~- 283 (355)
T 3tjz_B 209 LAVSKMISKFTRHGLKSPFAYCM----MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK- 283 (355)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHH----HHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhcCCCcChHHHHH----HHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH-
Confidence 23333444443321 1211111 11111122222 2356777777778888999988888888776553222
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHH
Q 000098 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~ll 1799 (2256)
.+......+...+..+++++|-.|++.+..++..+. ..+...-..+++.+.|+|-.++.-++..+
T Consensus 284 ---~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 ---ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred ---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 122334455556666777899999998888776543 34445566777888888877766555433
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.017 Score=63.86 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=159.3
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhh----hHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQL----SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l----~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
..+..+...+.|.++.++..+..+++.+.+.. ....++.++|.+++.+.+++-++..-|+.+++.+.++.|-.- .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~-~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS-K 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-H
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-H
Confidence 35667778889999999999999999998884 334568999999999999999999999999999999876432 3
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhH
Q 000098 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1496 ~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l 1574 (2256)
.+..+...+.....++++-.+..++..++.+ +.. .....++..+.+.+..++.+++. ++..+.++.... .|...+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~--~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S-~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL--EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS-ADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS--CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC-SSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc--cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc-CCHHHH
Confidence 4567888889999999999999999999988 221 12356667777777777777764 566665522211 222345
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhh-cCCCHHHHHHHHHHH
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAI 1643 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L-~d~~~~VR~~a~~aL 1643 (2256)
..++.-+...+++.++.++..|...+..+.+. .-++.+.+-+-.+.....++. ....|.+|..|-..-
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF-PLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-cccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 55666677788888999999999998888763 222344444444555555555 567788887665433
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.49 E-value=1.8e-05 Score=91.67 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000098 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2256)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L 1504 (2256)
+...++|++..||..+...+ +. +.+...+.|++|.+|.++...+ +. . .+
T Consensus 103 L~~ll~D~d~~VR~~aA~~l-------~~-------~~L~~L~~D~d~~VR~~aA~~l-------~~-------~---~l 151 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------PP-------G---RL 151 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------CG-------G---GG
T ss_pred HHHHHcCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHHhc-------CH-------H---HH
Confidence 34456777777777665432 11 1223345567777777665421 11 1 12
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHH
Q 000098 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2256)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2256)
..+++|+++.||.++...+ +. +.+...+.|++..||. +...+. .+.+..
T Consensus 152 ~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l~----------------~~~L~~ 201 (244)
T 1lrv_A 152 FRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRLR----------------GDDLLE 201 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHCC----------------GGGGGG
T ss_pred HHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhCC----------------HHHHHH
Confidence 3456777777777776641 11 1233455666666653 222210 123445
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1584 ~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
.+.|.+|.||..++..++ .+.+..+ .|++|.||..+...||
T Consensus 202 Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 566677777766554321 1333334 6777777776665544
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.41 E-value=5.3e-05 Score=87.73 Aligned_cols=185 Identities=16% Similarity=0.083 Sum_probs=126.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHH-HHHHHhcccccCCChhhHhhHHHHHHHh
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2256)
.++.|+++.||..+...+. + ..+...+.|++..||.. ...+ . .+.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------~------~~l~~L~~D~~~~VR~~aA~~L---------~-------~~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------V------EALTPLIRDSDEVVRRAVAYRL---------P-------REQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------G------GGGGGGTTCSSHHHHHHHHTTS---------C-------SGGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------H------HHHHHHccCcCHHHHHHHHHHC---------C-------HHHHHHH
Confidence 4579999999999988641 1 12566788999999853 2221 0 1346677
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHH
Q 000098 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2256)
Q Consensus 1585 L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~ 1664 (2256)
++|.++.||..++.. + .. +.+..+++|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~---l----~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADR---L----PL------------EQLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHH---S----CT------------GGGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHh---C----CH------------HHHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 899999999887653 1 11 1234557899999999988732 221 233
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHH
Q 000098 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2256)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~ 1744 (2256)
.+..|+++.+|..++.. .+.+ .+...+.|+++.||..++..+ +. +.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~~----------~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------RG----------DDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------CG----------GGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHH
Confidence 45567888899888775 2222 233567899999999887642 11 45677
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHH
Q 000098 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2256)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg 1800 (2256)
++.|+++.||..+..++. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 789999999998877643 2455555 8999999998876554
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.41 E-value=3.4e-05 Score=81.12 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhh
Q 000098 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2256)
Q Consensus 1419 ~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2256)
..-.+.+...+.|+++.+|..+..+++.+.. . -++.+.+.+.|.+|.+|..++.+||.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----T----THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 3456677788899999999988877765421 1 14888889999999999999999987642 3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHH
Q 000098 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDIL 1560 (2256)
Q Consensus 1499 ~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L 1560 (2256)
..++.+...++|+++.||..|+++|+.++. ...++.|...+.|++..+|. +..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 557788888899999999999999998863 23466677777777776663 44443
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.25 Score=66.78 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=95.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHH--HHHH-HHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLP-LLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~--~llp-~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
.++|.+.+ +++. ++..|++|+.++..|++... ....+. .+++ .+...+.|++..||.+|+.+++.++..-+.+
T Consensus 35 ~i~Pll~~-L~S~-~~~~r~~A~~al~~l~~~~~--~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVLKD-LKSP-DAKSRTTAAGAIANIVQDAK--CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHHHH-HSSS-CCSHHHHHHHHHHHHTTSHH--HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHH-cCCC-CHHHHHHHHHHHHHHHcCcH--HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 56776654 5654 78999999999999986322 122221 3444 4556789999999999999999987654332
Q ss_pred hH-----HhHHHHHHHhccC-------C-------C-------hhHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHh
Q 000098 1455 GV-----KLVLPSLLKGLED-------K-------A-------WRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEV 1507 (2256)
Q Consensus 1455 ~v-----~~ilp~Ll~~L~~-------~-------~-------w~~R~~a~~~Lg~la~~~p~~l~~~-L~~Ivp~L~~~ 1507 (2256)
.. ..+++.+...+.. . . |..-...+.+|..++++..+.+... -...+|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 21 2366766655421 0 0 1222235667788887766544322 13566666666
Q ss_pred hcC---CCHHHHHHHHHHHHHHHhh
Q 000098 1508 LTD---THPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1508 L~D---~~~~VR~aA~~aL~~l~~~ 1529 (2256)
|.+ ...+|+.+|.++|..+.+.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 632 3468999999999999875
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00048 Score=72.21 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHh
Q 000098 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2256)
Q Consensus 1379 il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ 1458 (2256)
-.+.+.+.+.++ ++.+|..++.+++.+ +. +- ++.++..+.|+++.||..+.++++.+.. +.
T Consensus 13 ~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~ 73 (131)
T 1te4_A 13 GLVPRGSHMADE-NKWVRRDVSTALSRM----GD---EA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-------ER 73 (131)
T ss_dssp --------CCSS-CCCSSSSCCSSTTSC----SS---TT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------HH
T ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---hH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------HH
Confidence 344555555554 667777666554432 21 11 3777788999999999999998876632 34
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000098 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2256)
Q Consensus 1459 ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2256)
.++.+.+.+.|.+|.+|..++.+|+.+.. +..+|.|...++|+++.||..|.++|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 57788888889999999999999998742 3567888899999999999999999864
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.011 Score=67.72 Aligned_cols=188 Identities=15% Similarity=0.098 Sum_probs=116.4
Q ss_pred hHHHHHHHhccCCCh--hHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC-ch
Q 000098 1458 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP 1533 (2256)
Q Consensus 1458 ~ilp~Ll~~L~~~~w--~~R~~a~~~Lg~la~~~p~~l~~-~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~-~~ 1533 (2256)
..+|.+++.|.+++. ..+..|+..+..++...++.-.. .-...+|.|+++|..+++++|..|+++|..++..-. +.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 347888888887777 77777888888888776543211 123678999999999999999999999999986321 11
Q ss_pred -hH--HhHHHHHHhhhC-CCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhh-------c---------CCCHHH
Q 000098 1534 -EI--ASLVPTLLMGLT-DPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAET 1592 (2256)
Q Consensus 1534 -~i--~~lv~~Ll~~l~-d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L-------~---------d~~~~v 1592 (2256)
.+ ...+|.|++.+. .++..+++ +..+|................-+|.+...+ . ..++++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22 457888888886 45666653 443443322221111112222344444322 1 136789
Q ss_pred HHHHHHHHHHHhhhcCCC---CcchhhhhhhhHHHHHhhc------CCCHHHHHHHHHHHHHHHH
Q 000098 1593 KKKAAQIVGNMCSLVTEP---KDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIR 1648 (2256)
Q Consensus 1593 R~~a~~~l~~L~~~l~~~---~~l~~~l~~Ll~~L~~~L~------d~~~~VR~~a~~aL~~L~~ 1648 (2256)
+..+..++.+++.. ++ +.+.. .+.+++.|...+. +.+...++.+..+|..|+.
T Consensus 168 ~~na~~~L~nLss~--~~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSA--GADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC--CHHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 99999999999862 21 11111 1234555554443 2355778888888877654
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.012 Score=65.83 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000098 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2256)
Q Consensus 1336 ~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~ 1415 (2256)
.+.+..++..|..++...+|.-|+..|+.+ . .. ..+++.+...+.++++|.+|+.+..+|+.++...+..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~--~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KD--KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TS--HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----Cc--HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 344556788888888899999999977766 2 11 2688888885555569999999999999888744321
Q ss_pred HhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhh-hHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1416 pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l-~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
..++.+..-..|++..||..|.+......... .......++|.+-....|+++.+|++....|..+++..|+-.
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 25566777889999999999988765432221 112345678877778889999999999999999888776653
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.016 Score=65.03 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=96.0
Q ss_pred hhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhcchhcHHHHHHHHHhh
Q 000098 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLS-AMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2256)
Q Consensus 2042 ~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~-~l~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~ 2120 (2256)
..|.+.+......-|...|... . ....+++.+.. ...++...||+.+..+++.++...+. +..++.+..+
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~--~----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---e~~l~~~~~W 147 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL--S----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---KKALPIIDEW 147 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT--T----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT---TTTHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc--c----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH---HHHHHHHHHH
Confidence 3455555444444444443333 1 34678888887 55678899999999999999974332 2367788899
Q ss_pred cCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhccCCC
Q 000098 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2256)
Q Consensus 2121 l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~ 2186 (2256)
++|+++.+|+.|...+.-++.. ..+......+++.+-.+.+|++.-||++..++|..+.|.-|.
T Consensus 148 ~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 148 LKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp HHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 9999999999999887654432 223344455677777788999999999999999999887663
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=96.13 E-value=2.1 Score=55.34 Aligned_cols=230 Identities=15% Similarity=0.115 Sum_probs=130.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc------hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000098 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2256)
Q Consensus 1737 ~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~------~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~ 1810 (2256)
.-++.++..+..++..+|..++..+..+..+-.... .+.-+|.|...+.|...-+|.+++-++..+...
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~----- 196 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS----- 196 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-----
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC-----
Confidence 557889999999999999999999998886654421 234678899999999999999999999888521
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhcCh---hHHHH--HHH
Q 000098 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP---KTLKE--IMP 1884 (2256)
Q Consensus 1811 ~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~-~~D~~~~Vr~aA~~~l~~l~~~~~---~~l~~--~l~ 1884 (2256)
. ...+.++..-| -++.++..+-.- ..+ ...|-+-++.++..+..+.+ ..+++ ++|
T Consensus 197 ---------------n-~~iQklVAFEn--aFe~Lf~Ii~~Eg~~~-Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 197 ---------------N-GAIQKIVAFEN--AFERLLDIITEEGNSD-GGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp ---------------C-HHHHHHHHHTT--HHHHHHHHHHHHTGGG-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred ---------------C-HHHHHHHHHhc--cHHHHHHHHHhcCCCc-cchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 0 01122222111 122222221111 111 23455666677777776654 23333 444
Q ss_pred HHHHHHHHHhcCC----CH-HHHHHHHHHHHHHHHhh----Cc---c-------chhchHHHHhhhcCCC--ChhhHHhH
Q 000098 1885 VLMNTLISSLASS----SS-ERRQVAGRALGELVRKL----GE---R-------VLPSIIPILSRGLKDP--SASRRQGV 1943 (2256)
Q Consensus 1885 ~Ll~~L~~~L~~~----~~-~~R~~A~~aL~~lv~~~----~~---~-------~l~~llp~L~~~l~d~--~~~vR~~a 1943 (2256)
.+.+.+ ... .| ..|..-..+.-.+++.+ +. . .-..+++.+.+.+..+ ...+|..+
T Consensus 258 ~L~~LL----~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 258 RMKPWF----EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp GGGGGG----CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHh----CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence 444332 211 11 22322222222333322 11 0 1234556666655443 45688889
Q ss_pred HHHHHHHHHhhChh--hhHh----h---HhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 000098 1944 CIGLSEVMASAGKS--QLLS----F---MDELIPTIRTALCD-SILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1944 ~~aL~eii~~~~~~--~l~~----~---l~~li~~l~~~L~D-~~~~VR~~A~~al~~l~~ 1994 (2256)
+.++++++...... .+.. + .+.++..+...+.+ ...++|-+|+.+|..+..
T Consensus 334 l~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 334 INTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 99999988654321 1111 1 13355545555544 347889999999998874
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=95.84 E-value=1.6 Score=54.00 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=157.5
Q ss_pred cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCC
Q 000098 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936 (2256)
Q Consensus 1857 ~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~ 1936 (2256)
+...+..|.+.+..+..+.|.--.+-+..+++ ...+.+..+|..|.+.|..+|+. ...+++...|.+.++.++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lD----LcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLD----LCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHH----HHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH----HHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccc
Confidence 46788889999999999888765555555544 45899999999999999999875 678999999999999888
Q ss_pred hhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCC
Q 000098 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2256)
Q Consensus 1937 ~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2256)
+..+..+-.+|.+++..-... .+..+...+..+++.+|+.+..-+..-...++...+. .+
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~------------~E 173 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT------------KE 173 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSC------------HH
T ss_pred hHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhcc------------HH
Confidence 888888878887776543222 2333333333357889987554333222222221110 00
Q ss_pred chHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHh------hCCCCHHH
Q 000098 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA------MGDDDMDV 2090 (2256)
Q Consensus 2017 ~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~------l~~~~~~v 2090 (2256)
......+.+++++..-...=+..++.-|... +++ ... .....+++.+... +...|.+.
T Consensus 174 ~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l--------------kl~-~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~ 237 (507)
T 3u0r_A 174 VEELILTESKKVLEDVTGEEFVLFMKILSGL--------------KSL-QTV-SGRQQLVELVAEQADLEQTFNPSDPDC 237 (507)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS--------------GGG-SSH-HHHHHHHHHHHHHHTTTSCCCSSCHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhc--------------ccc-cCc-hHHHHHHHHHHHHHhccCCCCCcCHHH
Confidence 1111222233333111000011111100000 000 111 1112333333332 12234444
Q ss_pred HHHHHHHHHHHHhhcc-----hhcHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHHHHhch--hhhhhhHHHHHHHH
Q 000098 2091 QSLAKEAAETVTLVID-----EEGVESLVSELLKGVGDNQA-----SIRRSSAYLIGYFYKNSK--LYLVDEAPNMISTL 2158 (2256)
Q Consensus 2091 r~~a~~al~~l~~~~~-----~~~~~~ll~~Ll~~l~~~~~-----~vR~~A~~~l~~l~~~~~--~~~~~y~~~il~~L 2158 (2256)
-+..+.|+..-+-.+. ...+..+...+++.+.+=.. ..+..-+..++.++..++ .+....++.+...|
T Consensus 238 vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 238 VDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp HHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 4444555555544331 13355566666666654322 367778888888888777 33444666666666
Q ss_pred HHHcCCCC-----------------hHHHHHHHHHHHHhhccCC
Q 000098 2159 IVLLSDSD-----------------STTVAAAWEALSRVVASVP 2185 (2256)
Q Consensus 2159 ~~~l~D~d-----------------~~Vr~~A~~aL~~l~~~l~ 2185 (2256)
...|-.+. -.-.++-.-++..+.+..|
T Consensus 318 ~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P 361 (507)
T 3u0r_A 318 LEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLP 361 (507)
T ss_dssp HTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhCh
Confidence 65553221 1345677777777777766
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.2 Score=57.39 Aligned_cols=125 Identities=17% Similarity=0.057 Sum_probs=89.8
Q ss_pred HHHHHHHcCCCcH--HHHHHHHHHHHHHHhhhhH--hhH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHh-
Q 000098 1422 LPLLLVAFSDQVV--AVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS- 1494 (2256)
Q Consensus 1422 lp~ll~~l~D~~~--~VR~aa~~al~~l~~~l~~--~~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~- 1494 (2256)
+|.+...+..+++ .++..+..++..++..-+. ..+ ...+|.+++.|.+++...+..|+.+|..++...++.-.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5666677776655 8887788888877654332 222 34689999999999999999999999999986554311
Q ss_pred hhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCch-h-HHhHHHHHHhhh
Q 000098 1495 QCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP-E-IASLVPTLLMGL 1546 (2256)
Q Consensus 1495 ~~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~-~-i~~lv~~Ll~~l 1546 (2256)
-.-...+|.|+.+|. ..+.++++.|+.+|-.++..-.+. . .+.-+|.|...+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll 144 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI 144 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCC
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHH
Confidence 111368899999997 468999999999999998643332 2 245567776644
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=94.93 E-value=4.6 Score=49.94 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=102.3
Q ss_pred CchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhh
Q 000098 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2256)
Q Consensus 1413 ~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~ 1492 (2256)
.|..+-.+.+..++..+.|++..||..|...+-.+++. +.+..+...|.+.|..++...+...-..|-.+....|+.
T Consensus 58 ~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~ 134 (507)
T 3u0r_A 58 HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG 134 (507)
T ss_dssp GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH
Confidence 46677788899999999999999999888777777665 557888889999999888888888888888888877764
Q ss_pred HhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc----hhH-HhHHHHHHhhhCCCCh-hHHHHHHHHHhcccc
Q 000098 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEI-ASLVPTLLMGLTDPND-HTKYSLDILLQTTFV 1566 (2256)
Q Consensus 1493 l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~----~~i-~~lv~~Ll~~l~d~~~-~vr~al~~L~~~~~~ 1566 (2256)
. +..++..+.. ++..||..+..-|..-...++. ++. ..++..+.+.+.|-+. ...-.+..|..+...
T Consensus 135 t---l~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~ 207 (507)
T 3u0r_A 135 T---LGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL 207 (507)
T ss_dssp H---HHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG
T ss_pred H---HHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc
Confidence 2 2233332222 3578998877777555444432 344 3455556666765542 233344444432222
Q ss_pred cCCChhhHhhHHHHHHH
Q 000098 1567 NTVDAPSLALLVPIVHR 1583 (2256)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~ 1583 (2256)
.. ....+.+++++..
T Consensus 208 ~t--~~g~qeLv~ii~e 222 (507)
T 3u0r_A 208 QT--VSGRQQLVELVAE 222 (507)
T ss_dssp SS--HHHHHHHHHHHHH
T ss_pred cC--chHHHHHHHHHHH
Confidence 21 2234445555444
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.79 Score=50.26 Aligned_cols=87 Identities=13% Similarity=0.274 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhhCcc---chhchHHHHhhhcCCC--
Q 000098 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP-- 1935 (2256)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~---~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~l~d~-- 1935 (2256)
.+.+..++..|..-.+.+|+..+++.++.++-. .....|..|+..++.+++.++.. ..+.+...+.+.+.|+
T Consensus 66 lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 66 CIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNR 145 (196)
T ss_dssp HHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCC
Confidence 344556666665444455555555555544422 12379999999999999999875 4578888888888776
Q ss_pred ChhhHHhHHHHHHHH
Q 000098 1936 SASRRQGVCIGLSEV 1950 (2256)
Q Consensus 1936 ~~~vR~~a~~aL~ei 1950 (2256)
...+..|+..++..+
T Consensus 146 ~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 146 SEDSQYGALYCLSIL 160 (196)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 467889998887654
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=93.90 E-value=1.4 Score=48.22 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCC---CHHHHHHHHHHHHHHHHhhCcCc---hHHHHHHHH
Q 000098 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2256)
Q Consensus 1590 ~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~---~~~VR~~a~~aL~~L~~~~g~~~---~~~lip~Ll 1663 (2256)
...-.....++..+.. +..-.+.||+..++|.+..++... ...+|+.|+..++.++...|..+ .+.+...+.
T Consensus 60 l~~L~~lm~~~~ALl~--N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 60 AEVLKTCIALYFSLIK--NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 3433444455555655 344578999999999998887531 22799999999999999998763 234555555
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHHHHhcHhHHHHHH-HHH
Q 000098 1664 DALKS-DNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDI 1701 (2256)
Q Consensus 1664 ~~L~~-~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll-~~l 1701 (2256)
+.+.+ ..+....-||..++.. +|.+..+.++ |.+
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l 173 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHA 173 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCH
Confidence 55544 3455567777777654 4555444433 544
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.43 E-value=19 Score=41.48 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHH
Q 000098 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPK 1514 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~ 1514 (2256)
..+-....-+..++-+-.+.-.+.+++.+++...+.+...|+-.+..+...+...++ ..+.+++.+..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----LLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHH
Confidence 455555555555444434455688889888887788899999999988888755443 4567788888889999999
Q ss_pred HHHHHHHHHHHHHhhcCchhHHhHHHHHHhh-hCCCC--hhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHH
Q 000098 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMG-LTDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2256)
Q Consensus 1515 VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~-l~d~~--~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~ 1591 (2256)
|.+.+..+...+-.. .++. ..+++ +....+.+.+ ..+...+.+.+...+..
T Consensus 106 V~K~~I~~~~~iY~~------------~l~~i~~~~~~~~~~~~~W~~m--------------~~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 106 VIKRVIQACGSIYKN------------GLQYLCSLMEPGDSAEQAWNIL--------------SLIKAQILDMIDNENDG 159 (257)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHTTSSSCCHHHHHHHHHH--------------HHHHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHHHH------------HHHHHhcCCCCcchHHHHHHHH--------------HHHHHHHHHHHccCCcc
Confidence 999988887766432 2221 12222 1122233222 22444556667778889
Q ss_pred HHHHHHHHHHHHhh
Q 000098 1592 TKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1592 vR~~a~~~l~~L~~ 1605 (2256)
+|..+..++..+.-
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988888764
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=27 Score=42.57 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHH
Q 000098 1437 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516 (2256)
Q Consensus 1437 R~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR 1516 (2256)
+-....-+..++-+-.+.-...++|.+++...+.+..+|+..+..|...+....+ .++.+++.|..+++|.++.|.
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e----l~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE----LLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHHH
Confidence 4444444444433333445578999999998899999999999999888764433 356788888889999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC--hhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000098 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2256)
Q Consensus 1517 ~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~--~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~ 1594 (2256)
+.++.+...+-.. .+..+. .+++ +....+.+.+. .+...+...+...+..+|.
T Consensus 118 K~~I~~~tslYpl--------~f~~i~---~~~~~~~~~e~~W~~m~--------------~lK~~Il~~~ds~n~GVrl 172 (386)
T 3o2t_A 118 KKAILTMTQLYKV--------ALQWMV---KSRVISELQEACWDMVS--------------AMAGDIILLLDSDNDGIRT 172 (386)
T ss_dssp HHHHHHHHHHHHH--------HHHHHH---HC-CCCHHHHHHHHHHH--------------HHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHh---cCCCcchhHHHHHHHHH--------------HHHHHHHHHhccCCcchHH
Confidence 9988888776421 111111 1222 12222333222 2344455566677889999
Q ss_pred HHHHHHHHHhhh
Q 000098 1595 KAAQIVGNMCSL 1606 (2256)
Q Consensus 1595 ~a~~~l~~L~~~ 1606 (2256)
.+..++..+.-.
T Consensus 173 ~aiKFle~VIl~ 184 (386)
T 3o2t_A 173 HAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887643
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=89.89 E-value=6.7 Score=55.47 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=94.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhh-------HhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000098 1432 QVVAVREAAECAARAMMSQLS-------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2256)
Q Consensus 1432 ~~~~VR~aa~~al~~l~~~l~-------~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L 1504 (2256)
.++.+|+++.-+++.++...- .+.++.+...+.+.+...+...+..++.+||.+.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 467788888888887776532 22346666666777777777778889999998764 3445555
Q ss_pred HHhhc-------CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC--hhHH-HHHHHHHhcccccCCChhhH
Q 000098 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l 1574 (2256)
.+++. +...+||.+|++||..+.... | +.+-+.+++...|.. ..+| .|+..|..+ .|+.
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55553 224689999999999887431 2 233344555554443 4566 355555431 1333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
..+..+....-.+++..|+......+.++++
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 3344444444456777777766666666665
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=89.53 E-value=18 Score=48.97 Aligned_cols=297 Identities=13% Similarity=0.105 Sum_probs=152.7
Q ss_pred HHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcC---CCHHHHHHHHHHHHHHHhhcCc
Q 000098 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2256)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~i~~ 1532 (2256)
++.++|.++.++.+++-.+...+..++..++...|......+|.++..+...|.. .++.--.+++.+|..++..+..
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667888888888998888888899999999988844444677888888888776 4555455667777777765432
Q ss_pred -h----hHHhHHHHHHhhhCCCChh--HHHHHHHHHhcccccCCC-h----hhH---hhHHHHHHHhhc-----------
Q 000098 1533 -P----EIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVD-A----PSL---ALLVPIVHRGLR----------- 1586 (2256)
Q Consensus 1533 -~----~i~~lv~~Ll~~l~d~~~~--vr~al~~L~~~~~~~~~~-~----~~l---~~i~p~L~~~L~----------- 1586 (2256)
+ ++..++..++..+ |+++- +-.++..+......-.+. - ..+ +...|.+.+.+.
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 1 2223333333333 44432 222333333222211110 0 000 001111111110
Q ss_pred --CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHH
Q 000098 1587 --ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 1663 (2256)
Q Consensus 1587 --d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll 1663 (2256)
|...+.+ .++. ....+..++..++..++.++.. ....+-.....++..+...+.++.++.++..+.
T Consensus 496 ~~d~~~~~~--------~~~~---sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 496 RVDDELLNN--------AFKA---STTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLN 564 (799)
T ss_dssp CCCTTHHHH--------HHHH---HTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHH
T ss_pred cccHHHHHH--------HHHH---HHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0111100 1111 1123455666677777777763 333343445556666777777777777777777
Q ss_pred HHhhcCCCHHHHHHHHHH----HHHHHHHhcHhHHHHHHHHHHHhccC----C------------CHHHHHHHHHHHHHh
Q 000098 1664 DALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCSH----Q------------RASVRDGYLTLFKYL 1723 (2256)
Q Consensus 1664 ~~L~~~~~~~~R~~aa~~----L~~i~~~~g~~~l~~ll~~ll~~l~~----~------------~~~vR~~al~~l~~L 1723 (2256)
+...+..........+.- +..++..-+. .++.++|.+...+.. . ...--.-.+.+++.+
T Consensus 565 ~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~ 643 (799)
T 1vsy_4 565 RNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDV 643 (799)
T ss_dssp HHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHH
Confidence 766653221100111111 3344444444 677777766644321 1 111112234555666
Q ss_pred HhhhChhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Q 000098 1724 PRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1724 a~~~g~~f~~yl~~ilp~Ll~~L~-d~~~~VR~~Al~al~~iv 1765 (2256)
....|..+.+|-++++..+-..+. ..+..+-..+...+..++
T Consensus 644 v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL 686 (799)
T 1vsy_4 644 LRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSAL 686 (799)
T ss_dssp HTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHH
T ss_pred HhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 666677777787777776665553 334433343444444443
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=89.35 E-value=25 Score=49.74 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhhCcccchhhcHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhccC----chHhHHHHHHHHHHHcC
Q 000098 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRL----FEPYVIQMLPLLLVAFS 1430 (2256)
Q Consensus 1358 Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~---~~~~~~Re~al~al~~L~~~l~~~----~~pyv~~llp~ll~~l~ 1430 (2256)
|++.|.......-+ ..+++..+...+.. .+++..|+.++.+++.+....... -..++..+...+...+.
T Consensus 375 a~~~l~~~~~~~~P----t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~ 450 (1056)
T 1lsh_A 375 ATQIVASTLSNQQA----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD 450 (1056)
T ss_dssp HHHHHHHHHHTCCC----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCC----CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh
Confidence 55666654433211 12466666666644 236788999999999998764211 12445666666666666
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-------CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHH
Q 000098 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-------DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2256)
Q Consensus 1431 D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-------~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~ 1503 (2256)
..+...+..+..+++.+.. ...++.+...+. +..-++|..|+.+|..++...|+.. -+.
T Consensus 451 ~~~~~~~~~~LkaLGN~g~-------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v-------~~i 516 (1056)
T 1lsh_A 451 RAKEEEIVLALKALGNAGQ-------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV-------QEI 516 (1056)
T ss_dssp TTCHHHHHHHHHHHHHHTC-------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH-------HHH
T ss_pred cCChHHHHHHHHHhhccCC-------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH-------HHH
Confidence 6666667777777777642 234555555543 2345788999999998886655543 334
Q ss_pred HHHhh--cCCCHHHHHHHHHHHH
Q 000098 1504 LTEVL--TDTHPKVQSAGQTALQ 1524 (2256)
Q Consensus 1504 L~~~L--~D~~~~VR~aA~~aL~ 1524 (2256)
+++.. .+.+++||.+|+..|-
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHH
Confidence 55555 4568999999988764
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.49 E-value=26 Score=40.33 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCH
Q 000098 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2256)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~ 1979 (2256)
+.+.....-..+++-.-.+..++++++.+.+...+++..+|.-+...+.+.+.. -..+...+++.+...+.|.++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-----k~~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-----KVELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCH
Confidence 344444444445443333457888888888877777788888777777766532 124667888999899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000098 1980 EVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1980 ~VR~~A~~al~~l~~ 1994 (2256)
.|-..+..++..++.
T Consensus 105 ~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 105 QVIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888888774
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=87.05 E-value=63 Score=39.39 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHH
Q 000098 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2256)
Q Consensus 1901 ~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~ 1980 (2256)
.+.....-+.+++-.-....+++++|.+.++..+++..+|.-+...+.+.+.. -..++..+++.+...+.|.++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----~~el~~~~l~~L~~LL~d~d~~ 115 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----DIELLLKLIANLNMLLRDENVN 115 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHH
Confidence 34444455555544334557899999999988888888998888777777642 2345678889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000098 1981 VRESAGLAFSTLFK 1994 (2256)
Q Consensus 1981 VR~~A~~al~~l~~ 1994 (2256)
|-..+..+++.++.
T Consensus 116 V~K~~I~~~tslYp 129 (386)
T 3o2t_A 116 VVKKAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2256 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-54 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-50 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-46 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-29 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-24 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-20 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-19 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 6e-31 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 4e-18 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-30 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-24 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-23 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 3e-19 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-22 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-17 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-09 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 8e-19 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-08 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-07 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-17 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 9e-05 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 1e-12 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-09 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 7e-08 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 1e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 4e-11 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 5e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 2e-05 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 8e-05 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 3e-05 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 1e-04 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-04 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 206 bits (525), Expect = 4e-54
Identities = 142/1013 (14%), Positives = 329/1013 (32%), Gaps = 90/1013 (8%)
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
L +K + +K D L K K DD VV +L +L + VQ
Sbjct: 8 LLEKMTSSDK-DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66
Query: 1322 SCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK---- 1376
CL PL+ + + + T+V L M SDK R ++ GL V+ +S
Sbjct: 67 KCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 1377 ---YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQV 1433
I L +A + + AL + + G L + +L LL +
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR 185
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ 1492
+AVR+ A ++ ++ LL L ++ + T ++ +Q + A++ A +
Sbjct: 186 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245
Query: 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTD- 1548
+ + L KI+P + + +++ A + P +++++ L LT
Sbjct: 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305
Query: 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608
PN + + D + + + S + ++ AA+ + + + T
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGS---DDEYSDDDDMSWKVRRAAAKCLDAV--VST 360
Query: 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
+ + + + P + + V++ A SL++ ++ ++
Sbjct: 361 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 420
Query: 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
+ ++ +I+ + + + R + L L
Sbjct: 421 PLTMLQS-----------------QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463
Query: 1729 VQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLP----AVED 1782
++ ++P I+ L D + +++ AL +V++ +++ + V
Sbjct: 464 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842
+ + ++I ++ + L+ + + + + T
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK------------ 571
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1902
+ +D+ V++ A+ I+ N L +P + + L + +
Sbjct: 572 -------RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 1903 QVA--GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
V G ++ VL +PIL+ L+ + + G L ++ + S
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQT 2017
+ +D ++ + + +S + V + A +TL K + I+ L+ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 2018 SDTALDGLKQIL-----SVRTTAVLPHILPKLVHLPLSAFNA-------HALGALAEVAG 2065
AL + + +L L S A +++
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 2066 PGLNFHLGTILPALLSAMGDDDMD--VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
++ + + + ++ LA + V ID G L S +L+
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
++ +++Y +G + ++ S +L +++S
Sbjct: 865 PSEEVKSAASYALG--------SISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS 916
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQ 2236
Y++ I + + + G + LLP
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKG 969
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 195 bits (495), Expect = 1e-50
Identities = 148/1093 (13%), Positives = 352/1093 (32%), Gaps = 106/1093 (9%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-----PDSIQGSLSTLFSLYIRDIGLGGDNV 1187
S L + ++ S+ + R A L T L + DS + + + L L N
Sbjct: 6 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKL------LEDKNG 59
Query: 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKH 1247
+ + L ++ + I+ L + + +R +I +
Sbjct: 60 EV----QNLAVKCLGPLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGEL 114
Query: 1248 GRDN-----VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1302
+ + + L + +E + E + I L++ +++
Sbjct: 115 PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 174
Query: 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFG 1361
LL L +P AV++ L L+ S + L+ LL +L K+D R
Sbjct: 175 TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQC 234
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421
+A + + G + L + + + RE + AFE + + P+V +
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTI 294
Query: 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
+ + L + + + AM + +D +W+ ++++ +
Sbjct: 295 INICLKYLTYDPNYNYDDEDEDENAMDA-DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKC 353
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
L A+ + L + + P L + V++ A + + + P
Sbjct: 354 LDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPD 413
Query: 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601
+ P + + +V +H+ ++E+S +T++ ++
Sbjct: 414 AMEQGETPLTMLQ-----------------SQVPNIVKALHKQMKEKSVKTRQCCFNMLT 456
Query: 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP--EVRSVAARAIGSLIRGMGEENFPDLV 1659
+ +++ P + +I +L+P + L D ++ A + ++ + F V
Sbjct: 457 ELVNVL--PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV 514
Query: 1660 SW----LLDALKSDNSNVERSGAAQGLSEVLAALGTV----------YFEHILPDIIRNC 1705
++ + + S A +++ + + Y + + I+
Sbjct: 515 QALVPPVVACVGDPFYKI-TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRL 573
Query: 1706 S--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
V++ ++ + +LG + L L L+ L +NE R + A +
Sbjct: 574 KAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERL--KNEITRLTTVKALTL 631
Query: 1764 LVEHYATTSLPLLLPAVEDGIFN----DNWRIRQSSVELLGDLLFKVAGTSGKAL----- 1814
+ L +L + + + ++ ++ L L+ + + A+
Sbjct: 632 IAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 691
Query: 1815 -----LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY------MVRSDVSLSVRQA 1863
L SD + + + +++ ++ + + A
Sbjct: 692 DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 751
Query: 1864 ALHVWKTIV--ANTPKTLKEIMPVLMNTLISSLASSSSER-RQVAGRALGELVRKLGERV 1920
L ++ +V +++ +L + S + + ++ + + L R +
Sbjct: 752 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 811
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
+ + S + + + + G LS EL I A E
Sbjct: 812 PAVVGQFIQDVKNSRSTDSIRLLAL---LSLGEVGHHIDLSGQLELKSVILEAFSSPSEE 868
Query: 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE-DDQTSDTALDGLKQILSVRTTAVLPH 2039
V+ +A A ++ + + E +P +L + + L LK+I+S + L
Sbjct: 869 VKSAASYALGSI----SVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKP 924
Query: 2040 ILPKLVHLPLSAF---NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKE 2096
+ + L L +AE G T+LP L + +S
Sbjct: 925 YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARS---S 981
Query: 2097 AAETVTLVIDEEG------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE 2150
V I + +++ + + LK + D ++RR + N + D
Sbjct: 982 VVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1041
Query: 2151 APNMISTLIVLLS 2163
++ L
Sbjct: 1042 LDTVLPHLYNETK 1054
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 181 bits (459), Expect = 3e-46
Identities = 108/761 (14%), Positives = 244/761 (32%), Gaps = 50/761 (6%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+ +LL+ + + + L+ + + + K+V + ++L D + +VQ+
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
L + S +K ++ ++V TL + + + I L+T A S + L
Sbjct: 65 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 1579 PIVHRGL---------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
V + + ++ + +A I+ +M S + ++ + +L + L
Sbjct: 125 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS--RQGGLLVNFHPSILTCLLPQLT 182
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
P VR A+G L+ G F DL+ LL L ++S Q ++ +
Sbjct: 183 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242
Query: 1690 GTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746
G Y E I+P +++ C+ +R+ + F+ R + ++ ++ L L
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 302
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806
+ D + + + +W++R+++ + L ++
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGG-DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361
Query: 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ E + + +V A +
Sbjct: 362 HEMLPEFYKTVSPALISRFKERE---------ENVKADVFHAYLSLLKQTRPVQSWLCDP 412
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---S 1923
L+ +P ++ L + S + RQ L ELV L +
Sbjct: 413 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472
Query: 1924 IIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
++P + L D S++ + L ++ + + L+P + + D ++
Sbjct: 473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 532
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
A L L K D +S A +K + T + +
Sbjct: 533 TSEALLVTQQLVKVIRPL--------------DQPSSFDATPYIKDLF----TCTIKRLK 574
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK--EAAE 2099
+ + +G + G L L L L + ++ + ++ A
Sbjct: 575 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAG 634
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
+ + + V L + NQ +++ + + KN L + + +
Sbjct: 635 SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 694
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200
L V+ + +A V I + +
Sbjct: 695 PPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNEL 735
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (314), Expect = 4e-29
Identities = 139/1009 (13%), Positives = 302/1009 (29%), Gaps = 83/1009 (8%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+ +V+L A + +A L + ++ + + + R+ +
Sbjct: 141 KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT------SPRLAVRKRTII 194
Query: 1200 ALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIF 1259
AL ++ L+S + + + I + G L I
Sbjct: 195 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 254
Query: 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQR 1318
+ D+++ RE + + + K+ P V +++ L L
Sbjct: 255 PLVVKFCNVDDDEL---REYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311
Query: 1319 AVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378
+ + D+ R A A V +
Sbjct: 312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 371
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGR-------------------LFEPYVI 1419
++ L +R + + A+ L ++ + + V
Sbjct: 372 VSPALISRFKEREENVKAD-VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 430
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV---LPSLLKGLEDKAWRTKQ 1476
++ L ++ V R+ +++ L + + +P ++ L DK+ +
Sbjct: 431 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 490
Query: 1477 SSVQLLGAMAY---CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN- 1532
L +PQ + +VP + + D K+ S QQ+ VI+
Sbjct: 491 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 550
Query: 1533 ---------PEIASLVPTLLMGLTDPNDHTKYSLD-ILLQTTFVNTVDAPSLALLVPIVH 1582
P I L + L + + I + + + L +
Sbjct: 551 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQ 610
Query: 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642
L E + + + D+ P +G +P + L ++ A
Sbjct: 611 IFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSA 670
Query: 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALGTVYFEHILPD 1700
+ LI+ + ++ +LD L S + + +S + LA + I
Sbjct: 671 LDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGS 730
Query: 1701 IIRNCSHQRAS------VRDGYLTLFKYLPRSL--GVQFQNYLQQVLPAILD-GLADENE 1751
I+ S L F+ L + + + + L+ + + A ++
Sbjct: 731 ILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHK 790
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDNWRIRQSSVELLGDLLFKVAGTS 1810
+ L ++ ++D IR ++ LG++ + +
Sbjct: 791 QSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG 850
Query: 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVRQAALHVW 1868
L + + +E A LG + L V + LH
Sbjct: 851 QLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSL 910
Query: 1869 KTIV-ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927
K I+ + + LK + + L+ + R V LG KL +++P
Sbjct: 911 KEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG----KLTLIDPETLLPR 966
Query: 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGL 1987
L L S+ R V + ++ + + + I L D L VR A +
Sbjct: 967 LKGYLISGSSYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDLNVRRVALV 1025
Query: 1988 AFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP--HILPKLV 2045
F++ + I +++ T+L L ++ L +R + P H + +
Sbjct: 1026 TFNSAAHNKP-SLIRDLLDTVLPHLYNETKVRKEL--------IREVEMGPFKHTVDDGL 1076
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLA 2094
+ +AF + L + L+ + L + + D D++ L
Sbjct: 1077 DIRKAAF--ECMYTLLDSCLDRLD--IFEFLNHVEDGLKDHY-DIKMLT 1120
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (275), Expect = 1e-24
Identities = 127/948 (13%), Positives = 281/948 (29%), Gaps = 91/948 (9%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ L +DP + + ED
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 317
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 377
Query: 1178 RDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRML 1237
+NV A L + L ++ +
Sbjct: 378 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 437
Query: 1238 NAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297
+ +K + + E + + ++ + L
Sbjct: 438 K---QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP-------GIIFSLNDKSSS 487
Query: 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRG 1357
+ +D L + + + L+ + + ++ ++
Sbjct: 488 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV---ACVGDPFYKITSEALLVTQQLV 544
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
F + K T++ A + +E A+ + LG
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 1418 VIQMLPLLLVAFSD---QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
+ L + L + ++ V+ A + L + +P L L
Sbjct: 605 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRAL 663
Query: 1475 KQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
K ++ L + + + +P L ++ + T L +V
Sbjct: 664 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSS 723
Query: 1531 KNPEIASLVPTLLMGLTDP--NDHTKYSLDILLQTTFVNTVDAPSLALLVP-IVHRGLRE 1587
+ S++ L+ + P ++ Q V + L+ + +
Sbjct: 724 LSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ 783
Query: 1588 RSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+A T K++ + + +T PK+ +G + +VK +R +A ++G
Sbjct: 784 STALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--SIRLLALLSLGE 841
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
+ + +L S +L+A S + V +S A+ L + LP +++
Sbjct: 842 VGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYALGS----ISVGNLPEYLPFVLQEI 896
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
+ Q +L + + + V + Y++ + +L E R+ L
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT 956
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
T LP L + G + R S V + + D
Sbjct: 957 LIDPETLLPRLKGYLISG----SSYARSSVVTAVKFTI----------------SDHPQP 996
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
+ + I L L D L+VR+ AL + + N P +++++
Sbjct: 997 IDPLLKNCIGDF--------LKTL----EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1044
Query: 1886 LMNTLISSLASSSSERRQVA------GRALGELVRK-------------LGERVLPSIIP 1926
++ L + R+V G +RK L + +
Sbjct: 1045 VLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLN 1104
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974
+ GLKD + + L +++ S +L +D L+ +R
Sbjct: 1105 HVEDGLKDHYDIKMLT-FLMLVR-LSTLCPSAVLQRLDRLVEPLRATC 1150
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.7 bits (239), Expect = 2e-20
Identities = 127/1006 (12%), Positives = 274/1006 (27%), Gaps = 89/1006 (8%)
Query: 811 SANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSAL 870
R++S G K + A G + + S K + V L L +
Sbjct: 97 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA-LDIM 155
Query: 871 GEMAIANPVFAHSQLPSLVKFVDPLLQSP--IVGDVAYEALVKLSRCTAMPLCNWALDIA 928
+M + PS++ + P L SP V AL L +
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV------ 209
Query: 929 TALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF-TFVF 987
DLI + +S+ + + + + + +
Sbjct: 210 ---------------DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 254
Query: 988 PIIERILLSPKRTGLHD--DVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGS 1045
P++ + + + + +I++ L P+Y
Sbjct: 255 PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 314
Query: 1046 ALNELCLGLQPNEVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIE-VST 1100
++ Y+ D VR A + + + LPE + VS
Sbjct: 315 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP 374
Query: 1101 SLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDE 1160
+L + E++V + S L + + E T L
Sbjct: 375 ALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDA-------MEQGETPLTMLQS 427
Query: 1161 YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL 1220
+I +L + RQ L +VL I +
Sbjct: 428 QVPNIVKALHKQMK-------------EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 474
Query: 1221 --ISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVR- 1277
I +L D ++ ++ + + + A + + +
Sbjct: 475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITS 534
Query: 1278 -------EGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA--VQRAVSSCLSPLM 1328
+ V + P + + + L V+ SC+ ++
Sbjct: 535 EALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 594
Query: 1329 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
++ D + + L ++ K R ++ G + + + + +
Sbjct: 595 CNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILAS 654
Query: 1389 DRNSAKR--REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446
+R + G L A + L + +I + L + +
Sbjct: 655 FLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLT 714
Query: 1447 MMSQLSAQGVKLVLPSLL---------KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497
++++ + + S+L L+ A Q L +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
P ++ TH + + + + A + + + + L
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLL 834
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
+L + +D L ++ S E K A+ +G++ +
Sbjct: 835 ALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV---------GNL 885
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677
LP V + + P+ + + ++ +I V + L + G
Sbjct: 886 PEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL-KHCECAEEG 943
Query: 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737
++E L L + E +LP + + R +T K+ L+
Sbjct: 944 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN 1003
Query: 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL---LPAV 1780
+ L L D + +VR AL + + + LL LP +
Sbjct: 1004 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.3 bits (230), Expect = 3e-19
Identities = 162/1207 (13%), Positives = 327/1207 (27%), Gaps = 110/1207 (9%)
Query: 354 NALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSD 413
N L K + + K +L +D+ N EV+ + + + +
Sbjct: 25 NDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQVET 83
Query: 414 LLSFFASGLKE-KEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLD 472
++ + + KE LR L+ + S+L + + + T A+ + +
Sbjct: 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE 143
Query: 473 GIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCM--ACVEL 530
+ ++ A DI A+ + L+ PS++ + S + +
Sbjct: 144 DVSV-----QLEALDIMADML---SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195
Query: 531 LVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLL 590
L L++ + V L+ L+ + + S + I H L
Sbjct: 196 LGHLVMSCGNIVFV----DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Query: 591 EFSNF-LSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASAR 649
+ + + F V V T++ I L P+ +
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311
Query: 650 VIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANL 709
DA ++ + +S V L ++ +
Sbjct: 312 DEDED-------ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 364
Query: 710 LEQ--QAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSS 767
L + + +L + ++ L D E L+
Sbjct: 365 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 424
Query: 768 EQGV------YIAEIVAAKNTKQSKGRFRMYEE------QDGVDHVGSNHSAKRESANRE 815
Q + + + K+ K + F M E H+ S N +
Sbjct: 425 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 484
Query: 816 VSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSL-MLSALGEMA 874
S + K S + + + + V ++ L ++
Sbjct: 485 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 544
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++ L I A + ++ + ++ L
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 935 VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERIL 994
+ + + + L I TV + + P++
Sbjct: 605 LPNTLQIFLE---------------RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEG- 648
Query: 995 LSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGL 1054
+L + L L L + +L S AA+ A+ + L
Sbjct: 649 ---------VPILASFLRKNQRALKLGTLSALDILIKNYS--DSLTAAMIDAVLDELPPL 697
Query: 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVA 1114
+ + +++ I L + S L
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR-SPLLQGGALSAMLDFF 756
Query: 1115 EAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFS 1174
+A S S + ++A + + +
Sbjct: 757 QALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVG 816
Query: 1175 LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRG 1234
+I+D+ N + R L+L + + + ++ A + + +V+
Sbjct: 817 QFIQDV----KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL-EAFSSPSEEVKS 871
Query: 1235 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294
A I + + + + + + +Y L+ I + A L
Sbjct: 872 AASYALGSISVGNLPEYLPFVLQEITS------QPKRQYLLLHSLKEIISSASVVGL--- 922
Query: 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354
P V + LL E + V+ CL L + L + S
Sbjct: 923 KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR----LKGYLISGSSYA 978
Query: 1355 RRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412
R + + I L K I L+ L D + RR AL+ F
Sbjct: 979 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT-LEDPDLNVRR-VALVTFNSAAHNKPS 1036
Query: 1413 LFEPYVIQMLPLLL------------VAFS------DQVVAVREAA-ECAARAMMSQLSA 1453
L + +LP L V D + +R+AA EC + S L
Sbjct: 1037 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR 1096
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
+ L + GL+D + K + +L ++ P + Q L ++V L T T
Sbjct: 1097 LDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCT-TKV 1154
Query: 1514 KVQSAGQ 1520
K S Q
Sbjct: 1155 KANSVKQ 1161
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (327), Expect = 6e-31
Identities = 125/904 (13%), Positives = 272/904 (30%), Gaps = 107/904 (11%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 1165 IQGSLSTLFSL-------YIRDI---GLGGDNVDAGWLGRQGIALALHSAADV-LRTKDL 1213
I+ + +++ LG + + + A +
Sbjct: 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYR-----PSSASQCVAGIACAEIPVNQW 126
Query: 1214 PVIMTFLISRALA-DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
P ++ L++ ++ ++ L A I + + + + EE
Sbjct: 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
Query: 1273 YDLVREGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ V+ + + + H ++ + + P V+ A L +M
Sbjct: 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246
Query: 1330 SMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ L +++ K A G+ + + ++ +A E
Sbjct: 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGI----EFWSNVCDEEMDLAIEASEAAE 302
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV----AVREAAECAA 1444
E + + Y++ +L L + +AA
Sbjct: 303 Q----------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPKIVPK 1503
+ + V VLP + + +++ WR + ++V G + P QL + + +P
Sbjct: 353 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412
Query: 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLD 1558
L E++ D V+ + ++ ++ I A L+ L+ GL+
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW 472
Query: 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618
A L +K + +
Sbjct: 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR--PDGHQNNLRSSAYE 530
Query: 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 1678
L+ VK D P V+ + L + + S + N +S
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERL------QQVLQMESHIQSTSDRIQFNDLQSLL 584
Query: 1679 AQGLSEVLAALGTVYFEHILPDIIRNC------SHQRASVRDGYLTLFKYLPRSLGVQFQ 1732
L VL + I ++ + + V++ L L LG +F
Sbjct: 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644
Query: 1733 NYLQQVLPAILDGLADENES-VRDAALG-------AGHVLVEHYATTSLPLLLPAVEDGI 1784
Y++ P + GL + E V AA+G A + + + LLL + +
Sbjct: 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-- 702
Query: 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844
N + ++ + + GD+ + G + + ++ L + + +
Sbjct: 703 ENVHRSVKPQILSVFGDIALAI----------------GGEFKKYLEVVLNTLQQASQAQ 746
Query: 1845 VLAALYMVRSDVSLSVRQAALHVWKTIV-------ANTPKTLKEIMPVLMN-----TLIS 1892
V + Y D +R++ L + IV N + + P + I+
Sbjct: 747 VDKSDY-DMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805
Query: 1893 SLASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQGVCIG 1946
+ A +G+L G+ VL P I +L+ G + + +
Sbjct: 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865
Query: 1947 LSEV 1950
E+
Sbjct: 866 TKEL 869
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.0 bits (219), Expect = 4e-18
Identities = 103/830 (12%), Positives = 259/830 (31%), Gaps = 106/830 (12%)
Query: 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQL 1481
+L + A++C A +++ ++P L+ + + K+S+++
Sbjct: 94 YVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 1482 LGAMA-YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--------N 1532
+G + P+QL +I+ + + + P A + + ++
Sbjct: 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA-ATNALLNSLEFTKANFDKE 212
Query: 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRERS 1589
E ++ + P+ + + L + ++ L I ++
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
E + + N+C D + + E + P + A A+ L+
Sbjct: 273 DEVALQGIEFWSNVC-------DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV-- 323
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR 1709
++ + D+ N A L + H+LP I + +
Sbjct: 324 ---PILTQTLTKQDENDDDDDWNP-CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD 379
Query: 1710 ASVRDGYLTLFK-YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768
RD + F L Q + + Q +P +++ + D + VRD A + E
Sbjct: 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 1769 ATTSLP-LLLPAVEDGIFN---DNWRIRQSSVELLGDLLFKV--AGTSGKALLEGGSDDE 1822
++ + L + + R+ + L A E +
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499
Query: 1823 GASTEAHGRAIIEVLGR--DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880
+S E + ++E R +N + ++ Y ++ + + + + L+
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG--------ERVLPSIIPILSRGL 1932
+++ + + +S ++ + + L ++RK+ + V+ S++ +
Sbjct: 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFST 1991
+ + + + L +M+ P + L + + +V +A
Sbjct: 620 GSGGVQEDALMAVS---TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1992 LFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048
L ++ DE++ LL L ++ SV+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHR----------SVKPQIL------------ 714
Query: 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 2108
G +A G +L +L L A + + E
Sbjct: 715 ------SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RE 763
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168
+ +++G+ +Q ++ + ++S + + D D T
Sbjct: 764 SCLEAYTGIVQGLKGDQENVHPDVMLVQPRV------------EFILSFIDHIAGDEDHT 811
Query: 2169 --TVAAAWEALSRVVASVPKEV------QPSYIKVIRDAISTSRDKERRK 2210
VA A + + + K+V +P +++ + S+ + +
Sbjct: 812 DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRR-SKTNKAKT 860
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (325), Expect = 1e-30
Identities = 114/809 (14%), Positives = 257/809 (31%), Gaps = 84/809 (10%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 63
Query: 1555 YSLDILLQTTFV---NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
++L+ + + + S + ++ + S K
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIAS-----K 118
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD--------LVSWLL 1663
+ LLP++ +L A A+ + E D ++ L
Sbjct: 119 GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 178
Query: 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEH---ILPDIIRNCSHQRASVRDGYLTLF 1720
K + + RS A +++ + + H ++ + VR
Sbjct: 179 QFFKHSSPKI-RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL 237
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPL 1775
L + ++ ++ +L D++E+V A L E LP
Sbjct: 238 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 297
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
L+P + +G+ + I ++ D + + E +
Sbjct: 298 LIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDD 357
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895
++ ++R+ + + L + L+ L+
Sbjct: 358 DDDEIDDDDT---------ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 408
Query: 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955
E + A+ E + LP +IP L + L D A R C LS
Sbjct: 409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468
Query: 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL 2012
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A
Sbjct: 469 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 528
Query: 2013 EDDQTSD--TALDGLKQI-LSVRTTAVLPHILPKLVHLPLSAFNAH------------AL 2057
Q + D + + SV P + L+ + +N L
Sbjct: 529 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECL 588
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMG-----------------DDDMDVQSLAKEAAET 2100
++A G + + ++ + D D +A +
Sbjct: 589 SSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG 648
Query: 2101 VTLVIDEEGVE-----SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMI 2155
+ + + ++++ + + + D +R+SS L+G K ++ + +
Sbjct: 649 LAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFM 708
Query: 2156 STLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
L L+ + A A+ + + E+QP V+ + K
Sbjct: 709 PILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLEN 768
Query: 2216 ILIP----GFCLPKALQPLLPIFLQVFVL 2240
I G+ P+ + P+L F++ +
Sbjct: 769 TAITIGRLGYVCPQEVAPMLQQFIRPWCT 797
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (273), Expect = 2e-24
Identities = 100/805 (12%), Positives = 237/805 (29%), Gaps = 66/805 (8%)
Query: 1292 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQLM 1347
P + + +L L + E + L + Q+ + + +
Sbjct: 38 LNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 97
Query: 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407
R + + + + + L L EGA A + +C
Sbjct: 98 GDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDS-EDYNTCEGAFGALQKIC 154
Query: 1408 EKLGRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAM---MSQLSAQGVKLV 1459
E + + V+ M+P L F +R A +Q +
Sbjct: 155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 214
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+L D+ +++ + L + +L + IV + + D V
Sbjct: 215 TENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 274
Query: 1520 QTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+ ++ +P L+ L + ++ + +L + S +
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 1579 PIVHR-------------------------GLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613
P HR +K +A + + ++ ++
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY--RDEL 392
Query: 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV 1673
+P+I LL E+ + E + AI P+L+ L+ L + V
Sbjct: 393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 452
Query: 1674 ERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729
RS LS + Y + ++ ++++ V++ + F L
Sbjct: 453 -RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 511
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789
+ YL +L ++ + A L + + W
Sbjct: 512 ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 571
Query: 1790 RIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849
+ + + L LL ++ S + R + V + + A
Sbjct: 572 NMLKDEDKDLFPLLECLS----SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 627
Query: 1850 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQVAGR 1907
AL + + +++++ ++ + + E RQ +
Sbjct: 628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFA 687
Query: 1908 ALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964
LG+L + + V + +PIL L S + E ++ ++ ++
Sbjct: 688 LLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGE-ISIQMGIEMQPYIP 746
Query: 1965 ELIPTIRTAL--CDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL---EDDQ 2016
++ + + ++ + E+ + L + + + +L D++
Sbjct: 747 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE 806
Query: 2017 TSDTALDGLKQILSVRTTAVLPHIL 2041
D+A G+ ++SV + V+ +
Sbjct: 807 EKDSAFRGICTMISVNPSGVIQDFI 831
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (264), Expect = 2e-23
Identities = 109/780 (13%), Positives = 246/780 (31%), Gaps = 78/780 (10%)
Query: 1093 PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAA 1150
+ ++ L P+ ++ + ++ DF + L + R +
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66
Query: 1151 AEALATALDEYPDSI-QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR 1209
L + + + G + S + +IG + R + + + + A
Sbjct: 67 GLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI------RATVGILITTIASKGE 120
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFEN 1261
++ P ++ L S L + + A I + ++++ P F
Sbjct: 121 LQNWPDLLPKLCS-LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 179
Query: 1262 YLNKKASD-------------EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-D 1307
+ + + + + FT L ++P+V V + L
Sbjct: 180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM 239
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL-MKSDKYGERRGAAFGLAGVV 1366
+L + + + + + ++Q QD+ + + +++ + L ++
Sbjct: 240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 299
Query: 1367 KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426
L+ + + + E + + + + I+
Sbjct: 300 PVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDD 359
Query: 1427 VAF----SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1482
+ +R+ + A + + + + +LP L + L W K+S + +L
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419
Query: 1483 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASL 1538
GA+A Q + LP+++P L + L+D V+S L + + + + L
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
+ LL + D N + + T T P LA ++ + + +
Sbjct: 480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLIL 539
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL---------VDPIPEVRSVAARAIGSLI 1647
+G + V + YI +L+P + + + P+ E S A A+ S
Sbjct: 540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599
Query: 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSG------------AAQGLSEVLAALGT---- 1691
E + V+ + L N + A LS + LG
Sbjct: 600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 659
Query: 1692 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750
V +IL + + + VR L L ++ + + +P + L E
Sbjct: 660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
Query: 1751 ESVRDAALGAGHVLVEH-------YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
SV + A A + Y L L+ + + +++ +G L
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKT--LLENTAITIGRLG 777
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.8 bits (229), Expect = 3e-19
Identities = 83/736 (11%), Positives = 203/736 (27%), Gaps = 63/736 (8%)
Query: 1068 TKDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYG 1125
++D R +K ++ P + + + + D + +
Sbjct: 57 SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 116
Query: 1126 YDFGTDY-----SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDI 1180
L L +YN A AL ++ + + + +
Sbjct: 117 SKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPK 176
Query: 1181 GLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR--ALADTNADVRGRMLN 1238
L + R ++ + I +F + D +VR +
Sbjct: 177 FLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCR 235
Query: 1239 AGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 1298
A +M+++ + + I E L + +E L + +
Sbjct: 236 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 295
Query: 1299 HAVVDKLLDVLNTPS-------------EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ 1345
++ L++ + E + + +S + ++
Sbjct: 296 PKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEE 355
Query: 1346 LMKSDKYGE--------RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRRE 1397
D+ + R + V+ L L + L + +E
Sbjct: 356 DDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDEL--LPHILPLLKELLFHHEWVVKE 413
Query: 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457
+L + E + PY+ +++P L+ SD+ VR + +Q
Sbjct: 414 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 473
Query: 1458 LV----LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
+ LLK + D R ++++ + A +L L I+ L +
Sbjct: 474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 533
Query: 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573
K A+ + + + +LM + + P
Sbjct: 534 KNLLILYDAIGTLADSVGHHLNKPEYIQMLM---------PPLIQKWNMLKDEDKDLFPL 584
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633
L L + + + V + + + P
Sbjct: 585 LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN--------AQPDQYEAPDK 636
Query: 1634 EVRSVAARAIGSLIRGMGEENFP-----DLVSWLLDALKSDNSNVERS--GAAQGLSEVL 1686
+ VA + L G+G ++++ + ++ V +S L++
Sbjct: 637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 696
Query: 1687 AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746
+P + N + + SV + + +G++ Q Y+ VL +++ +
Sbjct: 697 FQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 756
Query: 1747 --ADENESVRDAALGA 1760
+ +++ +
Sbjct: 757 NRPNTPKTLLENTAIT 772
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (249), Expect = 5e-22
Identities = 97/665 (14%), Positives = 206/665 (30%), Gaps = 110/665 (16%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+ L+ L ++ + + +S++ L +A + + +++P LT+ + D V A
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDE-VLLAL 68
Query: 1520 QTALQQVGSVIKNPEIA-SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSL 1574
L +++ PE L+P L T + SL + + ++A
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA--- 125
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
VP+V R ++ A + P+ L + + D P
Sbjct: 126 -HFVPLVKRLAGGDWFTSRTSACGLFSVCY-----PRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 1635 VRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
VR AA +G + + +N +++ + + +V ++
Sbjct: 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239
Query: 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 1753
++P + + + S R Y+ K+ V + ++PA + + D V
Sbjct: 240 EALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1754 RDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1800
R AA E+ + + +LP +++ + + N ++ + ++
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1801 -DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
+ + + L + + + R +L A+ + D
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-E 1918
VR A + + + L + ++ L R+ A L +LV K G E
Sbjct: 418 VRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475
Query: 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978
+IIP + DP+ R ++ + G+
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT------------------ 517
Query: 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038
++PT+L D + +VR
Sbjct: 518 -----------------------KHMLPTVLRMAGD------------PVANVRFNV--- 539
Query: 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098
A +L + + + P L D D+DV+ A+EA
Sbjct: 540 ---------------AKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Query: 2099 ETVTL 2103
++L
Sbjct: 583 TVLSL 587
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.4 bits (238), Expect = 1e-20
Identities = 102/619 (16%), Positives = 201/619 (32%), Gaps = 53/619 (8%)
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
A L + L + + R ++ + LG E ++LP L D+ + A
Sbjct: 13 AVLIDELRNEDVQLRLN-SIKKLSTIALALG--VERTRSELLPFLTDTIYDEDEVLLALA 69
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPK 1499
E + V +LP L + + +V+ L A++ +P L
Sbjct: 70 EQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV- 128
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
P + + +++ + + A L +D + +
Sbjct: 129 --PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L + ++P+ + + A + N+ L+ + L
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEAL 242
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++P +++ D VR + A L + +G E + L D R+ A+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 1680 QGLSEVLAALGTVYFEHILPDIIRNCSHQRA---SVRDGYLTLFKYLPRSLGVQFQNYLQ 1736
+ E L E+++ I C + + + S + N ++
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSS 1795
+LP L L DE VR + + E LLPA+ + + WR+R +
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RS 1854
+E + L LG + +E L +L M
Sbjct: 423 IEYMPLL-------------------------------AGQLGVEFFDEKLNSLCMAWLV 451
Query: 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
D ++R+AA K +V K + ++ +++ + R + L
Sbjct: 452 DHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509
Query: 1915 KLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
G+ + ++P + R DP A+ R V L ++ S L E+ P +
Sbjct: 510 VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKL 566
Query: 1974 LCDSILEVRESAGLAFSTL 1992
D ++V+ A A + L
Sbjct: 567 TQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.5 bits (215), Expect = 7e-18
Identities = 94/632 (14%), Positives = 188/632 (29%), Gaps = 67/632 (10%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192
+ L L + + +RL + + L+T
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLST------------------------------------ 36
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA-GIMIIDKHGRDN 1251
IALAL + R++ LP + + +V + G G +
Sbjct: 37 ----IALAL--GVERTRSELLPFLTDTI------YDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT 1311
V L P E+ + EE VR+ V A++ + D + H V + +
Sbjct: 85 VHCLLPPLESLA----TVEETV--VRDKAVESLRAISHEHSPSDLEAH-FVPLVKRLAGG 137
Query: 1312 PSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371
+ + S + + + L D RR AA L K +
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197
Query: 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS- 1430
++K I +D + R E V+ L S
Sbjct: 198 DNVKSE-IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
V + +A+ +++ + +L+K + R S A
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSAD 315
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+ + + +I+P + E+++D + V+SA + + + ++ + L +
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
I + L+ + L E + + A + +
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSD 1669
+ L LVD + +R A + L+ G+E ++ +L
Sbjct: 436 EFFDEK---LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
N R ++ + G +H+LP ++R A+VR + + L
Sbjct: 493 NYLH-RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGA 1760
+V P + D++ V+ A A
Sbjct: 552 NS--TLQSEVKPILEKLTQDQDVDVKYFAQEA 581
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (211), Expect = 2e-17
Identities = 88/597 (14%), Positives = 201/597 (33%), Gaps = 42/597 (7%)
Query: 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDAL 1666
+ D + I +L+ E++ + ++R + + + ++ +G E +L+ +L D +
Sbjct: 3 ADGDDSLYPIAVLIDELR----NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI 58
Query: 1667 KSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725
++ A+ L +G Y +LP + + + VRD + + +
Sbjct: 59 YDEDE--VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISH 116
Query: 1726 SLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI 1784
+ + +P + + + R +A G V ++ L +
Sbjct: 117 EHSPSDLEAHF---VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLC 173
Query: 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLE-------GGSDDEGASTEAHGRAIIEVL 1837
+D +R+++ LG+ + + K+ + D I L
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897
+ E L + ++ S R + K + L+ + +
Sbjct: 234 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293
Query: 1898 SSERRQVAGRALGELVRKLGE-----RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
+E R A + E L ++ I+P + + D + + + + +
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 1953 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL 2012
GK ++ L+P L D EVR + + + G++ + + + + L
Sbjct: 354 ILGKDN---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 410
Query: 2013 EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN----------AHALGALAE 2062
+D L ++ + + + KL L ++ L L E
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 2063 VAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGV-ESLVSELLKGV 2121
G + TI+P +L+ GD + + ++ V ++ + ++ +L+
Sbjct: 471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
Query: 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
GD A++R + A + + + L L D D A EAL+
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDNSTLQSE--VKPILEKLTQDQDVDVKYFAQEALT 583
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 2e-12
Identities = 83/574 (14%), Positives = 197/574 (34%), Gaps = 29/574 (5%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDG 1715
++ L+D L++++ + R + + LS + ALG +LP + + +
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775
L + G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA-----LLEGGSDDEGASTEAHG 1830
+ + +W ++S L + + ++ KA SDD A
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSL--SVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888
+ E + + V + + + S+++ L V + +++ ++M
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 1889 TLISSLASSSSERRQVAGRALGELVR-KLGERVLPSIIPILSRGLKDPSASRRQGVCIGL 1947
TL + S R + EL + E ++P +KD A R +
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 1948 SEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
E + + + +++P I+ + D+ V+ + L G E +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN----------AHA 2056
L A D+ + L+ + + V + + L+ +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 2057 LGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGVESLVS 2115
+ LA G F + ++ + D ++ A + + E +++
Sbjct: 426 MPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
++L GD R ++ + I + + +M+ T++ + D + +
Sbjct: 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT--TKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209
+L ++ + S +K I + ++ +D + +
Sbjct: 542 SLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.4 bits (168), Expect = 3e-12
Identities = 86/550 (15%), Positives = 170/550 (30%), Gaps = 38/550 (6%)
Query: 1146 VRLAAAEALATALD-----EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
V LA AE L T EY + L +L ++ + R +
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV-------------RDKAVES 110
Query: 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFE 1260
L + + DL L+ R R + + + L F
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1261 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAV 1320
N + VR G AK L + D ++ ++ + ++V+
Sbjct: 171 NLCSDDTPM------VRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 1321 SSCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ Q + Q++ LV L Q + + R A + K G K +
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
A A+ R A + CE L V ++ +L + V +
Sbjct: 284 PAFQNL--MKDCEAEVRAAASHKVKEFCENLSADCRENV--IMSQILPCIKELVSDANQH 339
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY---CAPQQLSQC 1496
+ A +++ LS K L L + + V+L + Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY 1555
++P + E+ D +V+ A + + + + +L M D +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ L+ + A ++P V + + + ++++E
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC----INVLSEVCGQDI 515
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675
+LP V ++ DP+ VR A+++ + + V +L+ L D +
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Query: 1676 SGAAQGLSEV 1685
A + L+ +
Sbjct: 576 YFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 5e-12
Identities = 93/591 (15%), Positives = 193/591 (32%), Gaps = 40/591 (6%)
Query: 1069 KDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYGY 1126
+DV +R LN++K + ++ E E+ L ++D ++ + AE +
Sbjct: 22 EDVQLR---LNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL 78
Query: 1127 DFGTDYSG-----LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIG 1181
G +Y L + VR A E+L E+ S + L R
Sbjct: 79 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH--SPSDLEAHFVPLVKRLA- 135
Query: 1182 LGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGI 1241
W + A L S + + + +D VR +
Sbjct: 136 ------GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
DNV + ASDE+ + + L + V
Sbjct: 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLA---VEACVNIAQLLPQEDLEALV 243
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAF 1360
+ L S V+ V+ + L +++ E T + LMK + R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASH 303
Query: 1361 GLAGVVKGFGISSLKKYGIAATL--REGLADRNSAKRREGALLAFECLCEKLGR--LFEP 1416
+ + + ++ L + L + + L LG+ E
Sbjct: 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363
Query: 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
+ L L + + + +C + + Q + +LP++++ ED WR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL 420
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNPEI 1535
+ ++ + +A + K+ L D ++ A + L+++ K
Sbjct: 421 AIIEYMPLLAGQLGVEFFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595
A+++P +L DPN + + + + ++P V R + A +
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
A+ + + ++ + P ++K+ D +V+ A A+ L
Sbjct: 539 VAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 3e-09
Identities = 74/540 (13%), Positives = 149/540 (27%), Gaps = 31/540 (5%)
Query: 1004 DDVLQMLYKHMDPLLPL-----PRLRMISVLYHVLGV-VPSYQAAIGSALNELCLGLQPN 1057
D+VL L + + L ++ L + V + +L + P+
Sbjct: 62 DEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 1058 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENI-EVSTSLWIAVHDPEKSVA 1114
++ + + + + +A R E+ D V
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVR 181
Query: 1115 EAAEDIWDRYGYDFGTDY------SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGS 1168
AA + D S +VRL A EA P
Sbjct: 182 RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---D 238
Query: 1169 LSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADT 1228
L L +R + + L ++ +T +P +
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 1229 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288
A + D +S + P + ++ + + L+
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA------LASVIMGLS 352
Query: 1289 KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK 1348
L KD+ H + L + + E +S+ + + + +L +
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408
K+ R + + G+ + +L + RE A + L E
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGL 1467
K G+ E ++P +L D R + K +LP++L+
Sbjct: 471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
Query: 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527
D + + + L + Q ++ P L ++ D V+ Q AL +
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 8e-19
Identities = 60/414 (14%), Positives = 131/414 (31%), Gaps = 42/414 (10%)
Query: 1633 PEVRSVAARAIGSLIR---------------GMGEENFPDLVSWLLDALKSDNSNVERSG 1677
R A I + + + ++ +++L L ++ S
Sbjct: 50 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--RPSS 107
Query: 1678 AAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733
A+Q ++ + A V L + N + + Q Q+
Sbjct: 108 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 167
Query: 1734 YLQQVLPAILDGLADENES--VRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFN 1786
++L AI+ G+ E S V+ AA A +E + V +
Sbjct: 168 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 227
Query: 1787 DNWRIRQSSVELLGD-------LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839
+ R+R ++++ L + G + A+ + G +
Sbjct: 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287
Query: 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899
++ + + + + + H K + L I+ + +
Sbjct: 288 EEMDLAI------EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341
Query: 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959
+ AG L L + ++P ++P + +K+P R + ++ SQL
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401
Query: 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + +PT+ + D + VR++A + + AI D + LL L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 1e-16
Identities = 61/461 (13%), Positives = 141/461 (30%), Gaps = 34/461 (7%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 11 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 70
Query: 1165 IQGSLSTLFS-------LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 1217
I+ + +++ L + A + P ++
Sbjct: 71 IKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELI 129
Query: 1218 TFLISRALAD-TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276
L++ + ++ L A I + + + + EE + V
Sbjct: 130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 189
Query: 1277 REGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--- 1330
+ + + + H ++ + + P V+ A L +M
Sbjct: 190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249
Query: 1331 -MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
M+ + + + MKSD + V + +
Sbjct: 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-------------MDLAIEA 296
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
+A++ + + + P + Q L D +AA + +
Sbjct: 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVL 1508
V VLP + + +++ WR + ++V G + P QL + + +P L E++
Sbjct: 357 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTD 1548
D V+ + ++ ++ I + LL L +
Sbjct: 417 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 1e-08
Identities = 59/465 (12%), Positives = 132/465 (28%), Gaps = 33/465 (7%)
Query: 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQSSV 1796
L IL+ + +AA +E A +LP L + + N R ++
Sbjct: 2 LITILEKTVSPDRLELEAAQKF----LERAAVENLPTFLVELSRVLANPGNSQVARVAAG 57
Query: 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856
+ + L +A + + + R EV +
Sbjct: 58 LQIKNSLTSK----------------DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE 101
Query: 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR---QVAGRALGELV 1913
+ A+ V A P + + +++ S+ + + G ++
Sbjct: 102 TYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 161
Query: 1914 RKLGERVLPSIIPILSRGLKDPSAS---RRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970
+ + I+ + +G++ S + L+ + + S ++ +
Sbjct: 162 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 221
Query: 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT---LLHALEDDQTSDTALDGLKQ 2027
A VR +A + + P + + AL G++
Sbjct: 222 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 281
Query: 2028 ILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087
+V + + H A+ A L L L DDD
Sbjct: 282 WSNVCDE-EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD 340
Query: 2088 MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SKLY 2146
+ A + +++ V ++ + + + + R ++ G +
Sbjct: 341 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 400
Query: 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191
L + TLI L+ D A + R+ +P+
Sbjct: 401 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 445
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-07
Identities = 57/474 (12%), Positives = 130/474 (27%), Gaps = 60/474 (12%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267
++LP + L R LA+ R+ AG+ +N L K
Sbjct: 27 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGL----------------QIKNSLTSKD 68
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPL 1327
D + + D V + + S C++ +
Sbjct: 69 PDIK-------------AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 115
Query: 1328 MQS------MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+ + P LV+ + + A + + + + A
Sbjct: 116 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 175
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
++ + S + A A E E ++ ++ A VR A
Sbjct: 176 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235
Query: 1440 AECAARAMMS----QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495
A +MS + + ++ ++ ++ + +
Sbjct: 236 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 295
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
+ + ALQ + P + + D + +
Sbjct: 296 ASEAAEQGRPPEH-----TSKFYAKGALQYL-----VPILTQTLTKQDENDDDDDWNPCK 345
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ + + + ++P + ++ + A G + EP + P
Sbjct: 346 AAG-VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKP 403
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-----LVSWLLD 1664
+ +P + +++ DP VR AA +G + + E D L+ L++
Sbjct: 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.2 bits (214), Expect = 2e-17
Identities = 91/786 (11%), Positives = 214/786 (27%), Gaps = 76/786 (9%)
Query: 1265 KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL 1324
+ S+ + L + + F G ++ L ++ K+ + L + N
Sbjct: 22 RLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81
Query: 1325 SPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384
+ + EA + + S + AA +A + + + +
Sbjct: 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD-IELPHGAWPELMKIMV 140
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-----VAFSDQVVAVREA 1439
+ + +LLA +CE + V +L+ ++ AVR A
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200
Query: 1440 AECAARAMMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
A A + + ++ + + + + + ++ L + +
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260
Query: 1495 QCLPKIVPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKN--------------------P 1533
+ + + LT + + KV S + +
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320
Query: 1534 EIASLVPTLLMGLTDPN-----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588
I +VP LL LT N D S+ + V
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
++AA + + Y+ LP + ++ D +V+ A IG +
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440
Query: 1649 GMGE-----ENFPDLVSWLLDALKSDNSNVERSGA-----AQGLSEVLAALGTVYFEHIL 1698
+ E ++ P +V L L+ + L+E + ++ ++
Sbjct: 441 SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500
Query: 1699 PDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
+I + R + + + ++D L +
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
+ +L + I + + L+G + + +
Sbjct: 561 LT----LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED 616
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876
A + G+ + L L + V V A+ I +
Sbjct: 617 DVFYAISALAASLGKGFEKYL-----ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671
Query: 1877 KTLKEIMPVLMNTLISSLASSSSER--RQVAGRALGELVRKLGE---RVLPSIIPILSRG 1931
+ + +MN L +++ ++ R + G++ +G L I+ +
Sbjct: 672 EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731
Query: 1932 LKDPSASR-----------RQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALCDSI 1978
+ + V ++A L ++ + I D
Sbjct: 732 QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ 791
Query: 1979 LEVRES 1984
L ++
Sbjct: 792 LYSEDA 797
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.5 bits (181), Expect = 1e-13
Identities = 124/860 (14%), Positives = 246/860 (28%), Gaps = 126/860 (14%)
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ--VVAV 1436
A L + + R +L +L +Q L D+ +
Sbjct: 6 FAQLLENSILSPDQNIRLTSE--------TQLKKLSNDNFLQFAGLSSQVLIDENTKLEG 57
Query: 1437 REAA----------------ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
R A + A+ ++Q+S + + + L L R ++ Q
Sbjct: 58 RILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIKN------P 1533
L+ A+A P+++ + + P V+ A AL +
Sbjct: 118 LIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS 175
Query: 1534 EIASLVPTLLMGLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587
+++ ++ G +L L N L+ +V +
Sbjct: 176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235
Query: 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE-VKKVLVDPIPEVRSVAARAIGSL 1646
E + A + + S M PY+ L + P +V S+ ++
Sbjct: 236 EDIEVQAAAFGCLCKIMSK--YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293
Query: 1647 --------------------IRGMGEENFPDLVSWLLDALKS------DNSNVERSGAAQ 1680
+ D+V LL+ L D+ A
Sbjct: 294 CEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVL 1739
L G E +L + +N + R+ + F + Y+ Q L
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413
Query: 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLP-LLLPAVEDGIFN---DNWRIRQSS 1795
P+IL+ + D++ V++ + + A + P LP V D+ ++ +
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+ +L+ ++A + + A R E A+ + +
Sbjct: 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE-------FNARASAFSALTT 526
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
+ +I L + M V N L A S E + L ++RK
Sbjct: 527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586
Query: 1916 LGERVLPSIIPILSRGL----KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971
V P ++ K SA V +S + AS GK +++ P +
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK-GFEKYLETFSPYLL 645
Query: 1972 TALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQI 2028
AL V +A + + S D ++ L + +
Sbjct: 646 KALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARR--------- 696
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
++ G +A G +L I+ ++A
Sbjct: 697 -ELKPAV------------------LSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE 737
Query: 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF---YKNSKL 2145
+ A + V E V ++ G+ D ++ + + ++ +L
Sbjct: 738 NGTLEALDYQIKV-----LEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQL 792
Query: 2146 YLVDEAPNMISTLIVLLSDS 2165
Y D LI ++
Sbjct: 793 YSEDATSRAAVGLIGDIAAM 812
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 2e-13
Identities = 97/708 (13%), Positives = 218/708 (30%), Gaps = 77/708 (10%)
Query: 1135 LFKALSHSN-YNVRLAAAEALATALDEYP---DSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
+ NV+ A+ AL + ++ S + + ++ +
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+A +L + + + + ++ A + +V+ I+ K+
Sbjct: 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
+ A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTI--ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
+++ V + L+ L + +D + D + A L + G
Sbjct: 317 FALSSIKDVVPNLLNLLTRQNEDP-------------EDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAF 1429
L+ E ++ + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEPVL---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
+DQ + V+E + ++ Q + V+ + L GL+D S ++
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQVGSVIKN------- 1532
+ A S + ++ D +++ +AL + +
Sbjct: 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540
Query: 1533 -------PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL-------ALLV 1578
++ + LT + + L + T + L+
Sbjct: 541 SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
++ SA + + + + + K Y+ P + K L V
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASL--GKGFEKYLETFSPYLLKALNQVDSPVSIT 658
Query: 1639 AARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYF 1694
A I + + E+ +++ L + + N+ E + ++ + +G F
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-F 717
Query: 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754
L DI+ C + P + ++ +Y +VL A+LD +
Sbjct: 718 IPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
Query: 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
D + Y T + ED +++V L+GD+
Sbjct: 767 DK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 9e-05
Identities = 83/688 (12%), Positives = 193/688 (28%), Gaps = 64/688 (9%)
Query: 883 SQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVD 942
Q +LV + +L + + G + E + L + + I + E +
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM------EREGE 221
Query: 943 SDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF--TFVFPIIERIL--LSPK 998
+ + V A E + + L + + ++ + + + K
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 999 RTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNE 1058
+ + + + + S L + S + + + LN L + E
Sbjct: 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341
Query: 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE 1118
+ A + V + A S+ + +
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401
Query: 1119 DIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIR 1178
+ Y ++ + V+ A + D +SI L +
Sbjct: 402 KVQRTYYVHQALPSI--LNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQA 458
Query: 1179 DIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM----TFLISRALADTNADVRG 1234
+ D+ I + A+ + + + D + R
Sbjct: 459 CLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518
Query: 1235 RMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL------VREGVVIFTG 1285
+A +++ + + + L + S +E ++E
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578
Query: 1286 ALAKHLAKDDPKVHAVVDKLLDV-----LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVS 1340
LA + K V V D L+ + S ++ V +S L S+ +
Sbjct: 579 VLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638
Query: 1341 RLLDQLMKS--DKYGERRGAAFGLAGVVKGFGISSLKKY--GIAATLREGLADRNSAKR- 1395
L+K+ A G + ++Y + L + +++ N+ +
Sbjct: 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698
Query: 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455
+ L F + +G F PY+ ++ L + A + + A ++ +
Sbjct: 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVL-----EA 753
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPK 1514
V ++ GL DK P+ L + I + +V D
Sbjct: 754 VLDAYVGIVAGLHDK-------------------PEALFPYVGTIFQFIAQVAEDPQLYS 794
Query: 1515 VQSAGQTALQQVG---SVIKNPEIASLV 1539
+ + A+ +G ++ + I
Sbjct: 795 EDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (112), Expect = 2e-05
Identities = 80/680 (11%), Positives = 180/680 (26%), Gaps = 118/680 (17%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
+++ ++ AI S+ + +P L+S L L +D+ G +
Sbjct: 92 PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVT-NKGVLTVAHSI 150
Query: 1686 LAALGTVY---------------FEHILPDIIRNCSHQRASVRDG-------------YL 1717
++ F ++++ Q + + +
Sbjct: 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLI 210
Query: 1718 TLFKYLPRSLGVQ------------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
L+ + F YL P + D E+ SV + LV
Sbjct: 211 KLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELV 270
Query: 1766 EHYATTSLPLLLPAVEDGI-----FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820
+ Y T + P + + I + + L+ L + + +
Sbjct: 271 QLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFN 330
Query: 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-------RSDVSLSVRQAALHVWKTIVA 1873
+E A + I+ + + + L + + + R+A K +
Sbjct: 331 NESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKE 390
Query: 1874 NTPKTLKEIMPVLMNTLISSLASSSSE---RRQVAGRALGELVRKLG------------- 1917
+ I M + S S+ + + L
Sbjct: 391 KNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450
Query: 1918 --ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
I P R + K+QL+ EL+P + T L
Sbjct: 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI----ELMPILATFLQ 506
Query: 1976 DSILEVRESAGLAFSTLFKSAG--------------MQAIDEIVPTLLHALEDDQTSDTA 2021
V A + + + + ++ L+ + +S
Sbjct: 507 TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK 566
Query: 2022 LDGLKQILSVRTTAV-----------------LPHILPKLVHLPLSAFNAH----ALGAL 2060
L + ++ + I+ + P + H ++GA+
Sbjct: 567 LAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626
Query: 2061 AEVAGPGLNFHL-GTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSE 2116
L +++P L+ +D + + V I E
Sbjct: 627 LNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPL 686
Query: 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEA 2176
L V + + +I + L + +S ++ + ++ L++ +
Sbjct: 687 LAPNVWELKGNIPAVTRLLKSFIKTDSSIFP--DLVPVLGIFQRLIASKAYEVHGF--DL 742
Query: 2177 LSRVVASVPKEVQPSYIKVI 2196
L ++ + YIK I
Sbjct: 743 LEHIMLLIDMNRLRPYIKQI 762
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (106), Expect = 8e-05
Identities = 53/506 (10%), Positives = 147/506 (29%), Gaps = 52/506 (10%)
Query: 1232 VRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL 1291
R + + +K+ ++ + ++++ SD K ++ + ALA +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436
Query: 1292 AKDDPKVHAVVDKL-------------LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ V + + L L N P ++ + +
Sbjct: 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE 496
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVK----------GFGISSLKKY------GIAAT 1382
+ +L +++D+Y AA + ++ F + + A
Sbjct: 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---------SDQV 1433
+ + + E + + + + +P Q+L +
Sbjct: 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493
E+ Q V ++P+ L + Q++ + +
Sbjct: 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIP 676
Query: 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQ--TALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
P P L + + + + + + + S I + L + + +
Sbjct: 677 ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYE 736
Query: 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
+ L + P + + ++ + L+ E K + + S
Sbjct: 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796
Query: 1612 DMIPYI-----GLLLPEVKKVLVDPIPEV-----RSVAARAIGSLIRGMGE--ENFPDLV 1659
+I +I GL ++ +P + R +A + +++ +P L+
Sbjct: 797 FLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLI 856
Query: 1660 SWLLDALKSDNSNVERSGAAQGLSEV 1685
S ++++ S+ + ++
Sbjct: 857 SSTMNSIIETASSQSIANLKNDYVDL 882
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 3e-05
Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 34/271 (12%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
L D R ++ AR L +G + + ++ DK + + +LG
Sbjct: 24 LFRLLDDHNSLKRISS---ARV----LQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544
+ + + L D V++ + Q +V +
Sbjct: 77 I-KICKKCEDNVFNILNNMA---LNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQI 131
Query: 1545 GLTDPNDHTKYS-------------LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
D + + + + + +L+ D + A +++ +
Sbjct: 132 TAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD 191
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ Q + +L + L V A G L
Sbjct: 192 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELGD--- 246
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
L+ L L + N + A L
Sbjct: 247 ----KTLLPVLDTMLYKFDDNEIITSAIDKL 273
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 44.1 bits (102), Expect = 1e-04
Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 48/311 (15%)
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QC +L +L D + + + LQ G V + +D N
Sbjct: 11 GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN 63
Query: 1551 DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ IL Q + +L + L ++SA + A + C
Sbjct: 64 YIRRDIGAFILGQIKICKKCEDNVFNIL---NNMALNDKSACVRATAIESTAQRCKKNPI 120
Query: 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669
I + D VR A A + N + L++ LK
Sbjct: 121 YSPKIVEQ------SQITAFDKSTNVRRATAFA-------ISVINDKATIPLLINLLKDP 167
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729
N +V I + N + V + ++
Sbjct: 168 NGDVRN----------------WAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG 211
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789
++VL + D L V D + A E T LP+L + D+
Sbjct: 212 LSYRKDKRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDN 263
Query: 1790 RIRQSSVELLG 1800
I S+++ L
Sbjct: 264 EIITSAIDKLK 274
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 4e-04
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 2076 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVE 75
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
R +A + + + L I L+ +L + + A L
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2256 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 100.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.97 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.96 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.65 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.63 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.49 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.28 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.24 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.17 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.02 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.93 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.84 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.77 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.71 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.53 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.06 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.84 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.73 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.35 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.32 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.97 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.03 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.88 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-36 Score=444.90 Aligned_cols=959 Identities=16% Similarity=0.159 Sum_probs=658.6
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDE-----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~-----~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~ 1207 (2256)
..+++-+.++|+++|..|...|...+.. .++....+++.|+... .+++.++|..|..+|..++..
T Consensus 6 ~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L----------~D~~~~Vq~~A~k~l~~l~~~ 75 (1207)
T d1u6gc_ 6 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL----------EDKNGEVQNLAVKCLGPLVSK 75 (1207)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT----------TCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHHh
Confidence 6788889999999999998877776632 3345666777776652 245678999999999999888
Q ss_pred hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcccc-----ccchHHHHHHHhhcc-CCChhhhhhhhhHHH
Q 000098 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN-----VSLLFPIFENYLNKK-ASDEEKYDLVREGVV 1281 (2256)
Q Consensus 1208 ~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~-----~~~Ll~~l~~~L~~~-~~~~~~~~~vr~~av 1281 (2256)
.+++..+.+++.|+ ..+.+++..+|..+..+...++...+... ...+.+.+...+.+. ... .+..+|..++
T Consensus 76 ~~~~~~~~l~~~L~-~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~v~~~al 152 (1207)
T d1u6gc_ 76 VKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEAL 152 (1207)
T ss_dssp SCHHHHHHHHHHHH-HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHH
T ss_pred CcHhhHHHHHHHHH-HHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC--CCHHHHHHHH
Confidence 87777777888874 56778888999988888777776654321 222233222222221 111 1225788899
Q ss_pred HHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-chHHHHHHHHHHHhcCCCHHHHHHHH
Q 000098 1282 IFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKYGERRGAA 1359 (2256)
Q Consensus 1282 ~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~~~~~l~~Ll~~L~~~~~~~vR~~Aa 1359 (2256)
..++.+...++.. .++...+++.++..+.++++.||+.+..|+..++...++ .+...+..++..+..+..+.+|+.+.
T Consensus 153 ~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 232 (1207)
T d1u6gc_ 153 DIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYI 232 (1207)
T ss_dssp HHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 9999988876654 466788999999999999999999999999999877644 34567888888888777778899999
Q ss_pred HHHHHHHhhhCcccchh-hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHH
Q 000098 1360 FGLAGVVKGFGISSLKK-YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVRE 1438 (2256)
Q Consensus 1360 ~~L~~lv~~~g~~~~~~-~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~ 1438 (2256)
++++.+++..|....+. ..+++.+.+.+.++ +...|+.++.++..+...++..+.||+..+++.++..+.+.......
T Consensus 233 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~ 311 (1207)
T d1u6gc_ 233 QCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311 (1207)
T ss_dssp HHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHcchhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence 99999999887543221 27899999888876 67899999999999999999999999999999998877643322222
Q ss_pred HHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHH
Q 000098 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518 (2256)
Q Consensus 1439 aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~a 1518 (2256)
........... ..........+.......+..|++|..++.+|+.++...|+.+..+++.++|.+...+.|.++.||..
T Consensus 312 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~ 390 (1207)
T d1u6gc_ 312 DEDEDENAMDA-DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 390 (1207)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHH
T ss_pred hHHHHHhhhhh-hccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 22222221111 11112233444455556788999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000098 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2256)
Q Consensus 1519 A~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~ 1598 (2256)
+..++..+.....+.......+........+ ...+ ...++.+++.+.+.+.+.++.+|..+..
T Consensus 391 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~l-------------~~~~~~i~~~l~~~l~~~~~~~r~~~~~ 453 (1207)
T d1u6gc_ 391 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETP----LTML-------------QSQVPNIVKALHKQMKEKSVKTRQCCFN 453 (1207)
T ss_dssp HHHHHHHHHHHHCCC------------CCCH----HHHH-------------HHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhchHHHHhhcch----HHHH-------------HHHhHHHHHHHHHHhcCCchhHHHHHHH
Confidence 9999999887654332211111111111111 1111 1133456778888889999999999999
Q ss_pred HHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCC--CHHHHHHHHHHHHHHHHhhCcCc----hHHHHHHHHHHhhcCCCH
Q 000098 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSN 1672 (2256)
Q Consensus 1599 ~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~--~~~VR~~a~~aL~~L~~~~g~~~----~~~lip~Ll~~L~~~~~~ 1672 (2256)
.+..++... +..+.+|++.+++.+...+.+. ...+|..+..+++.+....+++. ...+.+.+...+.+ ..+
T Consensus 454 ~l~~l~~~~--~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 530 (1207)
T d1u6gc_ 454 MLTELVNVL--PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD-PFY 530 (1207)
T ss_dssp HHHHHHHHS--TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC-SSH
T ss_pred HHHHHHHHc--chHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHcc-ccH
Confidence 999998853 3567889999999999998865 45688888999998887666553 34456666666654 566
Q ss_pred HHHHHHHHHHHHHHHHhcH----------hHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHH
Q 000098 1673 VERSGAAQGLSEVLAALGT----------VYFEHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2256)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~----------~~l~~ll~~ll~~l~--~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp 1740 (2256)
..+..+...++.++..++. .++..+++.++..+. +.+..+|..++.+++.+....|+.+.++++.+++
T Consensus 531 ~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~ 610 (1207)
T d1u6gc_ 531 KITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQ 610 (1207)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 6788888888888776642 255667777776664 4578899999999999999999888889999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc----hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000098 1741 AILDGLADENESVRDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2256)
Q Consensus 1741 ~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~----~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~ 1816 (2256)
.++..+.++. .|..+.+++..+........ +..+++.+...+.+.+|.+|..++.+++.++....+...
T Consensus 611 ~l~~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~----- 683 (1207)
T d1u6gc_ 611 IFLERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT----- 683 (1207)
T ss_dssp HHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC-----
T ss_pred HHHHHhcchh--hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccch-----
Confidence 9999988764 67788888777654333222 344677788888899999999999999988754221110
Q ss_pred CCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC
Q 000098 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS 1896 (2256)
Q Consensus 1817 ~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~ 1896 (2256)
.. ..+.++..+.....+.+..++..++.++..+....|....++...+++.+...+.+
T Consensus 684 ---------~~-------------~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s 741 (1207)
T d1u6gc_ 684 ---------AA-------------MIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRS 741 (1207)
T ss_dssp ---------HH-------------HHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTC
T ss_pred ---------hH-------------HHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcC
Confidence 00 01112222223345666667777777777666655543333333333222222222
Q ss_pred C----------------------------------------------CHHHHHHHHHHHHHHHHhhCccchhchHHHHhh
Q 000098 1897 S----------------------------------------------SSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930 (2256)
Q Consensus 1897 ~----------------------------------------------~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~ 1930 (2256)
+ ..........+++.+....+......+.+.+..
T Consensus 742 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~ 821 (1207)
T d1u6gc_ 742 PLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 821 (1207)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTT
T ss_pred chhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1 111222334445554444443322222222222
Q ss_pred hcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHH
Q 000098 1931 GLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 2009 (2256)
Q Consensus 1931 ~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll 2009 (2256)
..... .+..|..++.+++++....+.. ....+.+.+...+.|++++||.+|+.++|.+.. ...+.++|.++
T Consensus 822 ~~~~~~~~~~~~~al~~Lge~~~~~~~~----~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~----~~~~~~lp~il 893 (1207)
T d1u6gc_ 822 VKNSRSTDSIRLLALLSLGEVGHHIDLS----GQLELKSVILEAFSSPSEEVKSAASYALGSISV----GNLPEYLPFVL 893 (1207)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHSCCC----SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH----HTHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----hhHHHHhHHHH
Confidence 22222 3456666777788877665532 224466777788899999999999999998765 34567788888
Q ss_pred HhhccCCchH-HHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCH
Q 000098 2010 HALEDDQTSD-TALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088 (2256)
Q Consensus 2010 ~~L~~~~~~~-~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~ 2088 (2256)
+.++++.... ..+.++++++.. .....+.++.+.+++.++..+.+.++
T Consensus 894 ~~l~~~~~~~~~ll~al~ei~~~-------------------------------~~~~~~~~~~~~i~~~L~~~~~~~~~ 942 (1207)
T d1u6gc_ 894 QEITSQPKRQYLLLHSLKEIISS-------------------------------ASVVGLKPYVENIWALLLKHCECAEE 942 (1207)
T ss_dssp HHHHSCGGGHHHHHHHHHHHHHS-------------------------------SCSTTTHHHHHHHHHHHTTCCCCSST
T ss_pred HHHhcCchHHHHHHHHHHHHHHh-------------------------------cchhhhHHHHHHHHHHHHHHhCCCcH
Confidence 8887654332 233444444321 11234567889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCChH
Q 000098 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168 (2256)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d~~ 2168 (2256)
.+|..+.+|++.++... ...++|.|...+.++++.+|.+++.+++.++...+..+.+|+..+++.++..++|++..
T Consensus 943 ~vr~~~a~~lg~L~~~~----~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~ 1018 (1207)
T d1u6gc_ 943 GTRNVVAECLGKLTLID----PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLN 1018 (1207)
T ss_dssp THHHHHHHHHHHHHHSS----GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTH
T ss_pred HHHHHHHHHHHHHHhcC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999998643 34578889999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCC---CchhchHHHHHH
Q 000098 2169 TVAAAWEALSRVVASVPK---EVQPSYIKVIRD 2198 (2256)
Q Consensus 2169 Vr~~A~~aL~~l~~~l~~---e~l~~lv~~l~~ 2198 (2256)
||+.|..+|+.+++..|. ++++.++|.+..
T Consensus 1019 vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~ 1051 (1207)
T d1u6gc_ 1019 VRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYN 1051 (1207)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 999999999999988775 344455555443
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-31 Score=391.36 Aligned_cols=1046 Identities=14% Similarity=0.128 Sum_probs=704.1
Q ss_pred HHHHHHhhhcCCChhHHHHHHHhhhcCCcccCC--CCCchhhhhhhhhhhccCCcHHHHHHHHHHHhhcCCCCCCCh---
Q 000098 1058 EVASALHGVYTKDVHVRMACLNAVKCIPAVSTR--SLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY--- 1132 (2256)
Q Consensus 1058 ~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~w~~~~~~~~~~~--- 1132 (2256)
.+..||..+.|||+.+|..|+.-|.+....... +-.....+...+..+-.|.+.++|..|...+..+...+++..
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~ 83 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 83 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHH
Confidence 578899999999999999998877654321111 222344677788888899999999999888766544444332
Q ss_pred --HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHh
Q 000098 1133 --SGLFKALSHSNYNVRLAAAEALATALDEYPD------SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSA 1204 (2256)
Q Consensus 1133 --~~ll~~l~~~~~~vR~~aa~ala~~~~~~~~------~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l 1204 (2256)
+.|+..+.+.+..+|..++.++..++...|. ....+...+........ ...+.+.+|..+..++..+
T Consensus 84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~v~~~al~~l~~l 158 (1207)
T d1u6gc_ 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI-----AKQEDVSVQLEALDIMADM 158 (1207)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHH-----SCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHH
Confidence 4455566678899999999999988865442 22223333332211111 1135578898888888888
Q ss_pred hhhhccC---ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhhhhHHH
Q 000098 1205 ADVLRTK---DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVV 1281 (2256)
Q Consensus 1205 ~~~~~~~---~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av 1281 (2256)
...++.. ..+.+++.++ ..+.|+++.||..++.|...++...+.+.+..+++.+.+.+..... ..+|..++
T Consensus 159 ~~~~g~~l~~~~~~il~~l~-~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~~~ 232 (1207)
T d1u6gc_ 159 LSRQGGLLVNFHPSILTCLL-PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-----MSTTRTYI 232 (1207)
T ss_dssp HHHTCSSCTTTHHHHHHHHG-GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-----SCSCTTHH
T ss_pred HHHhhHhhHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCC-----HHHHHHHH
Confidence 8877653 2455666663 6899999999999999998888877777777777776665543211 14567789
Q ss_pred HHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC--CHHHHH-H
Q 000098 1282 IFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERR-G 1357 (2256)
Q Consensus 1282 ~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~--~~~vR~-~ 1357 (2256)
.+++.+++..+.. .++++.+++.++..+.+.+.++|+.+..++..++...+.....++..++..+...- ++.... .
T Consensus 233 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~ 312 (1207)
T d1u6gc_ 233 QCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD 312 (1207)
T ss_dssp HHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred HHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhh
Confidence 9999999875433 46678889999999999999999999999999888877666666666666554321 122111 1
Q ss_pred HHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHH
Q 000098 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437 (2256)
Q Consensus 1358 Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR 1437 (2256)
........... +.... ....+...... ++..|..|..+..+++.+....++.+.+++..++|.+...+.|.++.||
T Consensus 313 ~~~~~~~~~~~-~~~~~--~~~~~~~~~~~-~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr 388 (1207)
T d1u6gc_ 313 EDEDENAMDAD-GGDDD--DQGSDDEYSDD-DDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVK 388 (1207)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHH
T ss_pred HHHHHhhhhhh-ccchh--hhhHHHHHhhh-hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 11111111111 11100 01112222122 3447999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHh----------------------hHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhh
Q 000098 1438 EAAECAARAMMSQLSAQ----------------------GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2256)
Q Consensus 1438 ~aa~~al~~l~~~l~~~----------------------~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2256)
..+..++..+....... .+..+++.+.+.+.+.++.+|..++.+++.++...+..+..
T Consensus 389 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~ 468 (1207)
T d1u6gc_ 389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ 468 (1207)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG
T ss_pred HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHH
Confidence 99999998877543211 11345666667778899999999999999999999988889
Q ss_pred hhhhHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhcCc----hhHHhHHHHHHhhhCCCChhHH-HHHHHHHh----cc
Q 000098 1496 CLPKIVPKLTEVLTDTH--PKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTK-YSLDILLQ----TT 1564 (2256)
Q Consensus 1496 ~L~~Ivp~L~~~L~D~~--~~VR~aA~~aL~~l~~~i~~----~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~----~~ 1564 (2256)
+++.+++.+...+.|.. ..+|..++..+..+...... +++..+.+.+...+.++...++ +++..+.. ..
T Consensus 469 ~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~ 548 (1207)
T d1u6gc_ 469 HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIR 548 (1207)
T ss_dssp GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998754 46888899998888876543 3457788889999999887765 34443332 01
Q ss_pred -c---ccCCChhhHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHH
Q 000098 1565 -F---VNTVDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638 (2256)
Q Consensus 1565 -~---~~~~~~~~l~~i~p~L~~~L~--d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~ 1638 (2256)
. ......+.+..+++.+...+. +.+.++|..+..+++.+....+ ..+.++++.+++.+...+.+. ..|..
T Consensus 549 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~--~~~~~~~~~~l~~l~~~l~~~--~~r~~ 624 (1207)
T d1u6gc_ 549 PLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG--DNLGSDLPNTLQIFLERLKNE--ITRLT 624 (1207)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG--GGCCTHHHHHHHHHHHHTTSS--SHHHH
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhcch--hhHHH
Confidence 0 111233456666777666664 4567899999988888876433 345567788888888888764 46788
Q ss_pred HHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCH
Q 000098 1639 AARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRA 1710 (2256)
Q Consensus 1639 a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~ 1710 (2256)
+.++++.++...... ++..+++.+...+.+ .+...|..+..++..++...+.. ..+.+++.+...+.+.+.
T Consensus 625 a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~-~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~ 703 (1207)
T d1u6gc_ 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK-NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDM 703 (1207)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccH
Confidence 889998887654433 345566777666665 56678999999999998887654 345566666667788899
Q ss_pred HHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc-----cchhchHHHHHhhcC
Q 000098 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-----TSLPLLLPAVEDGIF 1785 (2256)
Q Consensus 1711 ~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~-----~~~~~llp~L~~~l~ 1785 (2256)
.++..++.+++.+....+....++...+++.++..+.++. +...+..++..+...... .....+++.+.....
T Consensus 704 ~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l--~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~ 781 (1207)
T d1u6gc_ 704 HVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVY 781 (1207)
T ss_dssp HHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCch--hhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Confidence 9999999999999888877777778888888888877652 112222222222222111 112234444443332
Q ss_pred C-CCHHHHHHH----HHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHH-H-hcCCcH
Q 000098 1786 N-DNWRIRQSS----VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-V-RSDVSL 1858 (2256)
Q Consensus 1786 d-~~~~iR~~s----v~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~-~-~~D~~~ 1858 (2256)
+ ..+..+..+ .+.++.+.... +... ...+..+.. . ..+...
T Consensus 782 ~~~~~~~~~~~~~~~~~~i~~l~~~~-------------------------------~~~~-~~~l~~~l~~~~~~~~~~ 829 (1207)
T d1u6gc_ 782 SQSTALTHKQSYYSIAKCVAALTRAC-------------------------------PKEG-PAVVGQFIQDVKNSRSTD 829 (1207)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHS-------------------------------CCCS-HHHHTTTTTTTTTTTCCH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhh-------------------------------hhhH-HHHHHHHHHHHhcccchH
Confidence 2 122222222 22223222110 0000 000000000 1 123345
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhhcCCCChh
Q 000098 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS 1938 (2256)
Q Consensus 1859 ~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~l~d~~~~ 1938 (2256)
.+|..++.+++.+....+.. ..+.+.+.+.+.+.++++++|..|+.+||.++...... .+|.+.+.+.+ ++.
T Consensus 830 ~~~~~al~~Lge~~~~~~~~---~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~----~lp~il~~l~~-~~~ 901 (1207)
T d1u6gc_ 830 SIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE----YLPFVLQEITS-QPK 901 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCC---SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHH----HHHHHHHHHHS-CGG
T ss_pred HHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHH----HhHHHHHHHhc-Cch
Confidence 67777888888776654321 22345556677789999999999999999998764444 44555544432 456
Q ss_pred hHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCch
Q 000098 1939 RRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018 (2256)
Q Consensus 1939 vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~ 2018 (2256)
.+...+.++.+++...+...+.++.+.+++.+...+.+.++.+|..+++++|.+... ....++|.|...+.+++..
T Consensus 902 ~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~----~~~~~lp~L~~~l~~~~~~ 977 (1207)
T d1u6gc_ 902 RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI----DPETLLPRLKGYLISGSSY 977 (1207)
T ss_dssp GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS----SGGGTHHHHTTTSSSSCHH
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHhCCCCHH
Confidence 788889999999998888778889999999998888899999999999999998752 2245677777777655321
Q ss_pred HHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhhCCCCHHHHHHHHHHH
Q 000098 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098 (2256)
Q Consensus 2019 ~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l~~~~~~vr~~a~~al 2098 (2256)
. ......++..+....+..+.+|+..++|.++..+.+++.++|..+..++
T Consensus 978 ~------------------------------r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l 1027 (1207)
T d1u6gc_ 978 A------------------------------RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF 1027 (1207)
T ss_dssp H------------------------------HHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHH
T ss_pred H------------------------------HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0 0011222222223345667788999999999999999999999999999
Q ss_pred HHHHhhcch---hcHHHHHHHHHhhcCC------------------CChhhHHHHHHHHHHHHHhchhhhhhhHHHHHHH
Q 000098 2099 ETVTLVIDE---EGVESLVSELLKGVGD------------------NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST 2157 (2256)
Q Consensus 2099 ~~l~~~~~~---~~~~~ll~~Ll~~l~~------------------~~~~vR~~A~~~l~~l~~~~~~~~~~y~~~il~~ 2157 (2256)
..++..-+. ++++.++|.+.....- +..+.|.+|++++..+...+...+ .+..++..
T Consensus 1028 ~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~--~~~~~~~~ 1105 (1207)
T d1u6gc_ 1028 NSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL--DIFEFLNH 1105 (1207)
T ss_dssp HHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS--CHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhc--CHHHHHHH
Confidence 999986543 7888999988865432 235689999999999987643322 12344566
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhhccCCC---CchhchHHHHHHHHhh
Q 000098 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPK---EVQPSYIKVIRDAIST 2202 (2256)
Q Consensus 2158 L~~~l~D~d~~Vr~~A~~aL~~l~~~l~~---e~l~~lv~~l~~~l~~ 2202 (2256)
+...+.| +.+++--+...+.+++...|. +.++.++++++..+..
T Consensus 1106 ~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 1152 (1207)
T d1u6gc_ 1106 VEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTT 1152 (1207)
T ss_dssp HHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHC
T ss_pred HHhcccc-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhc
Confidence 6777888 458999999999999988885 4688899999988864
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-30 Score=350.14 Aligned_cols=563 Identities=19% Similarity=0.237 Sum_probs=435.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhH
Q 000098 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV 1418 (2256)
Q Consensus 1339 l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv 1418 (2256)
+..+++.|.+ ++..+|..|+..|+.++..+|++... ..++|++.+.+.++ ..++..+...++.+....|. ..|+
T Consensus 12 i~~l~~~l~~-~~~~~R~~a~~~l~~ia~~lg~~~~~-~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~--~~~~ 85 (588)
T d1b3ua_ 12 IAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGG--PEYV 85 (588)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTS--GGGG
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCC--hhHH
Confidence 5556666654 56899999999999999999987653 47999999887664 33444333333333222221 2356
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhh
Q 000098 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2256)
Q Consensus 1419 ~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2256)
..++|.+...+.+++..||++|..++..+....+.+.+...+.+++..+. ++.+..|..++.+++.++....... .
T Consensus 86 ~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---~ 162 (588)
T d1b3ua_ 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---K 162 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---H
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH---H
Confidence 77889888899999999999999999999999888887655545555555 4445678888888888876655443 3
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhh
Q 000098 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1498 ~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
..+++.+.++++|+++.||.+++.+++.+++.++.+.. ..
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~--------------------------------------- 203 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT---------------------------------------
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHH---------------------------------------
Confidence 46788888899999999999999999999987764433 23
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCc-h
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 1655 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~-~ 1655 (2256)
++|.+...++|.++.+|..+..++..++..+.. ..+...++|.+...+.|++|.||..++.+++.++..++.+. .
T Consensus 204 l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~ 279 (588)
T d1b3ua_ 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 444555555666667777777777777764321 23445678888899999999999999999999998887653 3
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChh
Q 000098 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2256)
Q Consensus 1656 ~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~ 1730 (2256)
..++|.+...+.+ .+..+|..++..++.++..++.. .++.++|.+...+.+.++.+|..+..++..++..+|..
T Consensus 280 ~~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~ 358 (588)
T d1b3ua_ 280 TDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hhhhHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh
Confidence 4678877777765 66778999999999998877654 45778888999999999999999999999998888874
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc-hhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 000098 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2256)
Q Consensus 1731 f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~ 1809 (2256)
.+.+.++|.+...+.|+++.+|..+..++..+...++... .+.++|.+.+.+.|.+|++|..+++.++.+..
T Consensus 359 --~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~----- 431 (588)
T d1b3ua_ 359 --NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG----- 431 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----
T ss_pred --HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----
Confidence 4678889999999999999999999999888877766443 45688999999999999999999999988742
Q ss_pred CccccccCCCCCCCcchHHHHHHHHHHhcchhhH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 000098 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2256)
Q Consensus 1810 ~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~-~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~ 1888 (2256)
.+|.+.+. .+...+...+.|....||.+|...++.++...+.. ...+.+++
T Consensus 432 --------------------------~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~--~~~~~i~~ 483 (588)
T d1b3ua_ 432 --------------------------QLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp --------------------------HHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred --------------------------HcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH--HHHHHHHH
Confidence 23333332 34444556688999999999999999998765543 23445566
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc-chhchHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHH
Q 000098 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2256)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li 1967 (2256)
.+...+.++++..|..+..+++.+...++.. +.++++|.+.+.+.|+.+++|.+++.+++.+....+... +...+.
T Consensus 484 ~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---~~~~i~ 560 (588)
T d1b3ua_ 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---HHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---HHHHHH
Confidence 6667778999999999999999999987765 468899999999999999999999999999877776543 335577
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q 000098 1968 PTIRTALCDSILEVRESAGLAFSTL 1992 (2256)
Q Consensus 1968 ~~l~~~L~D~~~~VR~~A~~al~~l 1992 (2256)
|.+...+.|+|.+||..|..|++.+
T Consensus 561 ~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 8888888999999999999999876
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-31 Score=377.05 Aligned_cols=736 Identities=15% Similarity=0.166 Sum_probs=500.4
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHH--------HHHHhhcCCCC
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYDF 1128 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~--------~~~w~~~~~~~ 1128 (2256)
+++.++|.+++|||+++|++|+++|++.... |....++..++....+.+..+|.+| ...|...+.+.
T Consensus 11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~-----p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~ 85 (888)
T d1qbkb_ 11 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY-----PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85 (888)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTSTTTSTTS-----TTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 4678899999999999999999999987421 3334456666655566677788885 45788777777
Q ss_pred CCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhh
Q 000098 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2256)
Q Consensus 1129 ~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~ 1206 (2256)
+..+ ..++..+.+++..+|..++++++.++.. +|+.|+++++.|.+.. .+.++..|+++..+|.++++
T Consensus 86 ~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l----------~s~~~~~~~~al~~L~~i~e 155 (888)
T d1qbkb_ 86 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL----------DSEDYNTCEGAFGALQKICE 155 (888)
T ss_dssp CHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSS----------TGGGSSCSSSSSTTTHHHHG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHH
Confidence 7777 8899999999999999999999999854 5566777777766541 12345678888888888765
Q ss_pred h----hccC----ChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccc---cccchHHHHHHHhhccCCChhhhhh
Q 000098 1207 V----LRTK----DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1207 ~----~~~~----~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~---~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
- +..+ ..+.++..++ +++.+.++.||..++.+...++...+.. .++.+++.+... ..++ +..
T Consensus 156 ~~~~~~~~~~~~~~~~~ll~~ll-~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~--~~~ 228 (888)
T d1qbkb_ 156 DSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFAL----AGDE--EPE 228 (888)
T ss_dssp GGHHHHHTC---CCSTTTTHHHH-TGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTT----SSCC--CSS
T ss_pred HhHHHhhHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh----cCCc--chH
Confidence 2 2122 2344555553 6888999999999998887766544332 223333333222 2222 236
Q ss_pred hhhHHHHHHHHHHhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh------cCchHHHHHHHH-----
Q 000098 1276 VREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM------QDEAPTLVSRLL----- 1343 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~-~~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~------~~~~~~~l~~Ll----- 1343 (2256)
+|..++.+++.+.+..... .|++..+++.++..+.++++.|+..+.+.+..+.... .+..+.+++.++
T Consensus 229 vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~ 308 (888)
T d1qbkb_ 229 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308 (888)
T ss_dssp STTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999988877543322 4667777777888888999999887766433222100 000000000000
Q ss_pred ------------------------------------------------HHH---h---cCCCHHHHHHHHHHHHHHHhhh
Q 000098 1344 ------------------------------------------------DQL---M---KSDKYGERRGAAFGLAGVVKGF 1369 (2256)
Q Consensus 1344 ------------------------------------------------~~L---~---~~~~~~vR~~Aa~~L~~lv~~~ 1369 (2256)
... . ....|..|+.++.+|..++...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~ 388 (888)
T d1qbkb_ 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY 388 (888)
T ss_dssp SSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC
T ss_pred chHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh
Confidence 000 0 0113668999999999888888
Q ss_pred CcccchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 000098 1370 GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2256)
Q Consensus 1370 g~~~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~ 1449 (2256)
|.+.+. .+++.+.+.+.++ +|..|++|+++|+.+++++.+.+.||+.+++|.++..++|+++.||.++.+++++++.
T Consensus 389 ~~~il~--~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 465 (888)
T d1qbkb_ 389 RDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465 (888)
T ss_dssp CSSSHH--HHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHH--HHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 766554 6788888888766 8999999999999999988777899999999999999999999999999888887754
Q ss_pred hhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000098 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
... +.....++..+++.++..+.|+++.||.+|+++|..+++.
T Consensus 466 ~~~-------------------------------------~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~ 508 (888)
T d1qbkb_ 466 WVV-------------------------------------SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 508 (888)
T ss_dssp HHH-------------------------------------SSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred Hhh-------------------------------------hhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 321 1112245678888899999999999999999999999877
Q ss_pred cCc---hhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000098 1530 IKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2256)
Q Consensus 1530 i~~---~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~ 1606 (2256)
.++ |++..+++.+..++.+.+. ..+..+..+++.++..
T Consensus 509 ~~~~l~p~~~~il~~l~~~l~~~~~---------------------------------------~~~~~~~~al~~l~~~ 549 (888)
T d1qbkb_ 509 ACTELVPYLAYILDTLVFAFSKYQH---------------------------------------KNLLILYDAIGTLADS 549 (888)
T ss_dssp HTTSSGGGHHHHHHHHHHHTTTCCH---------------------------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhhH---------------------------------------HHHHHHHHHHHHHHHh
Confidence 653 4556666666666655543 3333333444444443
Q ss_pred cCCCCcchhhhhhhhHHHHHhhc---CCCHHHHHHHHHHHHHHHHhhCcCchH---HHHHHHHHHhhc------------
Q 000098 1607 VTEPKDMIPYIGLLLPEVKKVLV---DPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKS------------ 1668 (2256)
Q Consensus 1607 l~~~~~l~~~l~~Ll~~L~~~L~---d~~~~VR~~a~~aL~~L~~~~g~~~~~---~lip~Ll~~L~~------------ 1668 (2256)
++....-.+|.+.+++.+..... +.+. .+.....+++.++...|..+.+ .+++.+++.+..
T Consensus 550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 628 (888)
T d1qbkb_ 550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP 628 (888)
T ss_dssp HGGGGCSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhccccchHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32222224566677777666543 2333 3446678888888888876433 222222222211
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHhcHh---HH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHH
Q 000098 1669 ----DNSNVERSGAAQGLSEVLAALGTV---YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2256)
Q Consensus 1669 ----~~~~~~R~~aa~~L~~i~~~~g~~---~l--~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~il 1739 (2256)
..+......+...++.++..+|.. +. ..+++.+...+++.++.+|+.++.++|.++...+..+.||++.++
T Consensus 629 ~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~ 708 (888)
T d1qbkb_ 629 DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFM 708 (888)
T ss_dssp TTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122334455566788888888765 22 236788888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000098 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2256)
Q Consensus 1740 p~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ 1819 (2256)
|.+...+.++...++..++.+++.|+..++.. +...++.+
T Consensus 709 ~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~-~~py~~~i--------------------------------------- 748 (888)
T d1qbkb_ 709 PILGTNLNPEFISVCNNATWAIGEISIQMGIE-MQPYIPMV--------------------------------------- 748 (888)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG-GGGGSHHH---------------------------------------
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH-hhhhHHHH---------------------------------------
Confidence 99999999999999999999998888776643 21122221
Q ss_pred CCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcC-
Q 000098 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS- 1896 (2256)
Q Consensus 1820 ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~- 1896 (2256)
+..|...+ .+....|++.++.+++.++...|..+.++++.+++.+...+..
T Consensus 749 --------------------------l~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~ 802 (888)
T d1qbkb_ 749 --------------------------LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNI 802 (888)
T ss_dssp --------------------------HHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTS
T ss_pred --------------------------HHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccC
Confidence 11111111 1223457777888888898889999999999999988888765
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccchhchHHHHhhh--cCCCChhhHHhHHHHHHHHHHhhChhhhH
Q 000098 1897 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--LKDPSASRRQGVCIGLSEVMASAGKSQLL 1960 (2256)
Q Consensus 1897 ~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~--l~d~~~~vR~~a~~aL~eii~~~~~~~l~ 1960 (2256)
.+.+.+..+...+..+++.-.....+.+...+... +.++.++.+...+.-|.......|+....
T Consensus 803 ~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~ 868 (888)
T d1qbkb_ 803 RDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWR 868 (888)
T ss_dssp CCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHH
Confidence 34556788999999999865555544443322222 23445667777766666555555544333
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-28 Score=331.21 Aligned_cols=562 Identities=17% Similarity=0.216 Sum_probs=446.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHHhhccCCChhhhhhhhhHHHHHHHHHHhhhccCC
Q 000098 1217 MTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN-VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD 1295 (2256)
Q Consensus 1217 ~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~-~~~Ll~~l~~~L~~~~~~~~~~~~vr~~av~~L~~La~~l~~~~ 1295 (2256)
+..|+ +.+.+.|..+|..++.....+....|++. .+.++|.+.+.+.+ .+.++..+++.++.++..+...
T Consensus 12 i~~l~-~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~-------~~ev~~~~~~~l~~~~~~~~~~- 82 (588)
T d1b3ua_ 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD-------EDEVLLALAEQLGTFTTLVGGP- 82 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC-------CHHHHHHHHHHHTTCSGGGTSG-
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHcCCh-
Confidence 45553 68999999999999988777777777654 57899998887543 1246667777777776654321
Q ss_pred cchHHHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhc-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccc
Q 000098 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374 (2256)
Q Consensus 1296 ~~i~~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~-~~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~ 1374 (2256)
.++..+++.+...+.+++..||..+++++..+..... +.....+..++..|.+++.+..|..|+..++.+....+....
T Consensus 83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~ 162 (588)
T d1b3ua_ 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK 162 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence 2456677877778889999999999999988876653 234555666788888887777888888888887776654333
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~ 1454 (2256)
..+++.+.+..+|+ ++.+|+.+..+++.+++..+. +.....++|.+...++|+++.||..+..++..+...++..
T Consensus 163 --~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~ 237 (588)
T d1b3ua_ 163 --AELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp --HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred --HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence 25777777777766 899999999999999987763 2234568888889999999999999999999999888766
Q ss_pred hH-HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
.. ..++|.+...+.|.+|++|..++.+|+.++...+.... .+.++|.+..+++|++++||..++.++..+++.++..
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhh--hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 55 56889999999999999999999999999987665532 2478999999999999999999999999999887532
Q ss_pred -----hHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccC-CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000098 1534 -----EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2256)
Q Consensus 1534 -----~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~-~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l 1607 (2256)
.+..++|.+...+.|++..+|..+...... .... ........++|.+...+.|.++++|..+...++.+...+
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~-~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~ 394 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMG-LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG-GHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhh-hhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc
Confidence 347899999999999999888643322210 1111 112345667899999999999999999888888777643
Q ss_pred CCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCch-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000098 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2256)
Q Consensus 1608 ~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~-~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~ 1686 (2256)
+ .....+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.+.|.++..+.+ ..+.+|..++.+++.++
T Consensus 395 ~----~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D-~~~~VR~~A~~~L~~l~ 469 (588)
T d1b3ua_ 395 G----IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLV 469 (588)
T ss_dssp C----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHH
T ss_pred c----hhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHH
Confidence 2 2345677899999999999999999999999999999987744 5677777776654 67789999999999999
Q ss_pred HHhcHhH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000098 1687 AALGTVY-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2256)
Q Consensus 1687 ~~~g~~~-l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv 1765 (2256)
..+|.+. ...++|.+.....++++.+|..++.+++.+...++.++ +.+.++|.+++.+.|+.++||.++++++..+.
T Consensus 470 ~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~ 547 (588)
T d1b3ua_ 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999874 46788999999999999999999999999998887654 56789999999999999999999999999987
Q ss_pred HHhhccch-hchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1766 EHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1766 ~~~~~~~~-~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
..++...+ ..+.|.+.+...|++-.+|..+.+++..+
T Consensus 548 ~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 66655433 34778888888899999999998888765
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.6e-30 Score=363.99 Aligned_cols=723 Identities=15% Similarity=0.194 Sum_probs=518.9
Q ss_pred HHHhhcC---CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhc---ccccCCChhhHhhH
Q 000098 1504 LTEVLTD---THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALL 1577 (2256)
Q Consensus 1504 L~~~L~D---~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~---~~~~~~~~~~l~~i 1577 (2256)
+.++|.+ ++..+|+.|.+.|.++.. .|++...+..++....+++..+|.....+.+. ......+......+
T Consensus 13 l~~~L~~~~s~d~~~r~~A~~~L~~~~~---~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~I 89 (888)
T d1qbkb_ 13 ILQLLKESQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI 89 (888)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTSTTTSTT---STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 3444444 457899999988887743 34444444445555566666777532222221 11223445566778
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhC------
Q 000098 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG------ 1651 (2256)
Q Consensus 1578 ~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g------ 1651 (2256)
...+.+++.+.++.+|..++.+++.++.. .. ...++.++|.|.+.+.++++.++..++.+++.+++..+
T Consensus 90 k~~ll~~l~~~~~~vr~~~~~~i~~i~~~-~~----~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~ 164 (888)
T d1qbkb_ 90 KSECLNNIGDSSPLIRATVGILITTIASK-GE----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD 164 (888)
T ss_dssp HHHHTTGGGCCCSSTTTTTTTTTHHHHTT-TS----SCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hC----ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHH
Confidence 88899999999999999999999999863 12 23467888888888888888899999999999886432
Q ss_pred --cCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh
Q 000098 1652 --EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2256)
Q Consensus 1652 --~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~ 1726 (2256)
....+.++|.+++.+.+. +..+|..++.++..++...+.. .++.+++.+.....++++.+|..++.+++.+...
T Consensus 165 ~~~~~~~~ll~~ll~~~~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 243 (888)
T d1qbkb_ 165 VLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEV 243 (888)
T ss_dssp ---CCSTTTTHHHHTGGGSS-SSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCS
T ss_pred HHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 124566889998888764 4457888888887776544432 5788899999999999999999999999999988
Q ss_pred hChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----hhccchhchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000098 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2256)
Q Consensus 1727 ~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~-----~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ 1801 (2256)
.++.+.||++.+++.++..+.|+++.||..|++.+..+.+. +-...++.++|.+.+.+....+.+.........+
T Consensus 244 ~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 323 (888)
T d1qbkb_ 244 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEED 323 (888)
T ss_dssp CTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCC
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhh
Confidence 88889999999999999999999999998887765544322 1122345567777776665555443211100000
Q ss_pred HH--HhhcCCCc-------------ccccc-------CCCCCCCc---chHHHHHHH----HHHhcchhhHHHHHHHHHH
Q 000098 1802 LL--FKVAGTSG-------------KALLE-------GGSDDEGA---STEAHGRAI----IEVLGRDKRNEVLAALYMV 1852 (2256)
Q Consensus 1802 ll--~~~~g~~~-------------~~~~~-------~~~ed~~~---~~e~~~~~l----~~~Lg~e~~~~vl~~L~~~ 1852 (2256)
.. ........ ..... ...+++.. ....+.... ....|.+....+++.+...
T Consensus 324 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~ 403 (888)
T d1qbkb_ 324 ETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL 403 (888)
T ss_dssp TTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHh
Confidence 00 00000000 00000 00011100 011111111 2223455555677777777
Q ss_pred hcCCcHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc----chhchHHHH
Q 000098 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPIL 1928 (2256)
Q Consensus 1853 ~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L 1928 (2256)
..+.++.+|++|+.++++++.++...+.++++.+++.++..+.++++.+|..++++||.++...... ++..+++.+
T Consensus 404 l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l 483 (888)
T d1qbkb_ 404 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 483 (888)
T ss_dssp TTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHH
T ss_pred hccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999866432 577889989
Q ss_pred hhhcCCCChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-----hhHHh
Q 000098 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAIDE 2003 (2256)
Q Consensus 1929 ~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~-----~~~~~ 2003 (2256)
...+.|+++.++..+|.++..++..++. .+.||++.+++.+..++.+.....+..+..+++++....|. ...+.
T Consensus 484 l~~l~d~~~~V~~~a~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ 562 (888)
T d1qbkb_ 484 LKRILDSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM 562 (888)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHTT-SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence 9999999999999999999999988775 46789999999999999999999999999999999987764 34556
Q ss_pred HHHHHHHhhcc---CCc-hHHHHHHHHHHHhhhcccchhhhhh---h----h----------------hcCchhh---hH
Q 000098 2004 IVPTLLHALED---DQT-SDTALDGLKQILSVRTTAVLPHILP---K----L----------------VHLPLSA---FN 2053 (2256)
Q Consensus 2004 ilp~Ll~~L~~---~~~-~~~al~~L~~il~~~~~~~lp~li~---~----L----------------~~~p~~~---~~ 2053 (2256)
++|.+.+.... ++. ....++.+..+.....+.+.|+.-+ . + ...+... ..
T Consensus 563 l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 642 (888)
T d1qbkb_ 563 LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 642 (888)
T ss_dssp HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 66776665543 221 1234445554443333333332211 0 0 0111111 23
Q ss_pred HHHHHHHHHHhCCCccccHh--hHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhcch---hcHHHHHHHHHhhcCCCChhh
Q 000098 2054 AHALGALAEVAGPGLNFHLG--TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASI 2128 (2256)
Q Consensus 2054 ~~aL~~La~~~g~~l~~~l~--~Ilp~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~~~~~~v 2128 (2256)
..+++.+++..|..+.+++. .+++.+...+.+.+.++|..+..+++++...++. ++++.+++.+...+.++.+.+
T Consensus 643 l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v 722 (888)
T d1qbkb_ 643 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 722 (888)
T ss_dssp HHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHH
Confidence 45677788888999888775 4889999999999999999999999999987754 778999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHhhccCCCC---chhchHHHHHHHHhhh
Q 000098 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKE---VQPSYIKVIRDAISTS 2203 (2256)
Q Consensus 2129 R~~A~~~l~~l~~~~~~~~~~y~~~il~~L~~~l~D~d--~~Vr~~A~~aL~~l~~~l~~e---~l~~lv~~l~~~l~~~ 2203 (2256)
|.+|++++|.++...+.++.||++.+++.|+..+++++ ..|++|++.|+|++....|.. +++.+++.....+...
T Consensus 723 ~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~ 802 (888)
T d1qbkb_ 723 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNI 802 (888)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999998754 569999999999999887753 4777888888888876
Q ss_pred hhhhhhhccCCccccCCcCC-----CCcchhhHHHHHHHhhcc
Q 000098 2204 RDKERRKKKGGPILIPGFCL-----PKALQPLLPIFLQVFVLY 2241 (2256)
Q Consensus 2204 ~d~~r~~~~g~~~~l~g~~l-----p~~i~~~Lp~~~~~l~~~ 2241 (2256)
+|++.+. ..+.|||. |.++-+-++.|..++...
T Consensus 803 ~d~~ek~-----~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~ 840 (888)
T d1qbkb_ 803 RDNEEKD-----SAFRGICTMISVNPSGVIQDFIFFCDAVASW 840 (888)
T ss_dssp CCSHHHH-----HHHHHHHHHHHHCGGGTGGGHHHHHHHHTTC
T ss_pred CCcHHHH-----HHHHHHHHHHHHCcHHHHHHHHHHHHHHHhc
Confidence 6554321 12556653 667777888888888754
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-23 Score=291.39 Aligned_cols=712 Identities=13% Similarity=0.145 Sum_probs=488.3
Q ss_pred hHHH-hhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhh----
Q 000098 1134 GLFK-ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVL---- 1208 (2256)
Q Consensus 1134 ~ll~-~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~---- 1208 (2256)
++|. .+.++|+.+|+.|.+.|..+.+..+. .++..|.+... ....+-..|..|+..|++.....
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~---~~~~~l~~il~--------~~~~~~~~r~~A~i~lkn~i~~~~~~~ 76 (861)
T d2bpta1 8 QLLENSILSPDQNIRLTSETQLKKLSNDNFL---QFAGLSSQVLI--------DENTKLEGRILAALTLKNELVSKDSVK 76 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHT--------CTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHHhhcccchh
Confidence 4443 56789999999999999887765432 23333433321 11234578999999988765421
Q ss_pred ------------ccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHhhccCCChhhhhh
Q 000098 1209 ------------RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1209 ------------~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
+.+..+.+.+.+ .+++.++++.||..+..+...+.....+ ..|+++++.+.+.+.+. . ...
T Consensus 77 ~~~~~~~~~~~i~~~~~~~ik~~l-l~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~-~----~~~ 150 (861)
T d2bpta1 77 TQQFAQRWITQVSPEAKNQIKTNA-LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-Q----PEN 150 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-S----CHH
T ss_pred hhhHHhhhHhcCCHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCC-C----cHH
Confidence 111223344444 3688999999999999988887765544 46999999887776542 1 125
Q ss_pred hhhHHHHHHHHHHhhhccC----CcchHHHHHHHHHHcC--CCCHHHHHHHHHhhHHhHHhhcCc-----hHHHHHHHHH
Q 000098 1276 VREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLD 1344 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~----~~~i~~il~~Ll~~L~--~~~~~Vq~~~~~~L~~lv~~~~~~-----~~~~l~~Ll~ 1344 (2256)
+|.+++.+++.+++.++.. .+.+..++..++..+. +++..++..+..|+..++...... ....+..++.
T Consensus 151 ~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (861)
T d2bpta1 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVC 230 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHH
Confidence 7888999999999876543 2345667777777654 556889998889988877655322 2233334444
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhhCcccchh-hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc------------
Q 000098 1345 QLMKSDKYGERRGAAFGLAGVVKGFGISSLKK-YGIAATLREGLADRNSAKRREGALLAFECLCEKLG------------ 1411 (2256)
Q Consensus 1345 ~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~-~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~------------ 1411 (2256)
....++++.+|..+..++..++...+...... ..++..+........++..|..++..+..+++...
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 310 (861)
T d2bpta1 231 EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS 310 (861)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45566779999999999999998775432211 02333333333445588999999888887776421
Q ss_pred -----cCchHhHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHH
Q 000098 1412 -----RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479 (2256)
Q Consensus 1412 -----~~~~pyv~~llp~ll~~l~D-------~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~ 1479 (2256)
....+++..++|.+...+.+ .+..+|..+..++..++...+...+..+++.+...+.+.+|+.|.+++
T Consensus 311 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 390 (861)
T d2bpta1 311 PLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHH
Confidence 11244566778887777643 345789999999999998888777778888888888899999999999
Q ss_pred HHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-----hHHhHHHHHHhhhCCCChhH
Q 000098 1480 QLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLTDPNDHT 1553 (2256)
Q Consensus 1480 ~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----~i~~lv~~Ll~~l~d~~~~v 1553 (2256)
.+++.++.... ..+..+++.++|.+.+.+.|+++.||.+++++++.+++.++.. .+..+++.+.....+.....
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 470 (861)
T d2bpta1 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA 470 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHH
Confidence 99999998664 4567788999999999999999999999999999999876532 35677777777776654333
Q ss_pred HHHHHHHHh--cccccC---CChhhHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHH
Q 000098 1554 KYSLDILLQ--TTFVNT---VDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626 (2256)
Q Consensus 1554 r~al~~L~~--~~~~~~---~~~~~l~~i~p~L~~~L~--d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~ 1626 (2256)
+.+...+.. ..+... ...+....++..+..... +....+|..+..++..+... .+..+.++...+++.+..
T Consensus 471 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~--~~~~~~~~~~~l~~~~~~ 548 (861)
T d2bpta1 471 TNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY--ATDTVAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH--CCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence 333222221 011111 112223333444444332 34567888888888888874 345677777777776555
Q ss_pred hhc----C-----------CCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000098 1627 VLV----D-----------PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2256)
Q Consensus 1627 ~L~----d-----------~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~ 1688 (2256)
.+. . ....++..+..+++.+....+.. +.+.+++.+++.+....+..+|..+..+++.++..
T Consensus 549 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~ 628 (861)
T d2bpta1 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS 628 (861)
T ss_dssp HHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH
Confidence 543 1 11345566667777777766644 45678888888887766666888899999999999
Q ss_pred hcHh---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q 000098 1689 LGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHV 1763 (2256)
Q Consensus 1689 ~g~~---~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~--~~~VR~~Al~al~~ 1763 (2256)
+|.+ +++.++|.++..+++.++.+|..++.+++.++...|..+.||++.+++.++..+.++ +..+|..++.+++.
T Consensus 629 ~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~ 708 (861)
T d2bpta1 629 LGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGD 708 (861)
T ss_dssp HGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 8876 678899999999999999999999999999999999999999999999999999865 46789999999999
Q ss_pred HHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhH
Q 000098 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2256)
Q Consensus 1764 iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~ 1843 (2256)
++...+... ...+|.+...+ -..+ .. ..++.. .+ ..
T Consensus 709 i~~~~~~~~-~~~l~~~~~~l---------------~~~~----~~--------~~~~~~--~~-----~~--------- 744 (861)
T d2bpta1 709 IASNIGADF-IPYLNDIMALC---------------VAAQ----NT--------KPENGT--LE-----AL--------- 744 (861)
T ss_dssp HHHHHGGGG-HHHHHHHHHHH---------------HHHH----TC--------CCSSSS--HH-----HH---------
T ss_pred HHHHHHHHH-HHHHHHHHHHH---------------HHHh----Cc--------CCCccc--HH-----HH---------
Confidence 998887542 12222221111 1110 00 000000 00 00
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHh---cChhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhh
Q 000098 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVA---NTPKTLKEIMPVLMNTLISSLAS----SSSERRQVAGRALGELVRKL 1916 (2256)
Q Consensus 1844 ~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~---~~~~~l~~~l~~Ll~~L~~~L~~----~~~~~R~~A~~aL~~lv~~~ 1916 (2256)
|....+|+.++..+..++. +.+..+.|+++.+++.+...+.+ .+...+..++.++|+++..+
T Consensus 745 -----------~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 813 (861)
T d2bpta1 745 -----------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHC
Confidence 1112467777777766654 34567888999888877766554 35677889999999999998
Q ss_pred Ccc
Q 000098 1917 GER 1919 (2256)
Q Consensus 1917 ~~~ 1919 (2256)
|+.
T Consensus 814 ~~~ 816 (861)
T d2bpta1 814 PDG 816 (861)
T ss_dssp TTS
T ss_pred cch
Confidence 864
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=8.7e-22 Score=275.98 Aligned_cols=675 Identities=17% Similarity=0.145 Sum_probs=470.6
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh-hHHhHHHHHHHhccC-CChhHHHHHHHHHHHHHhhChhhHhh--
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ-- 1495 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~-~v~~ilp~Ll~~L~~-~~w~~R~~a~~~Lg~la~~~p~~l~~-- 1495 (2256)
.+...++..+.++++.||..+..++..++...-+. .++.++|.+++.+.+ +.+..|.+++.+|+.+++..+.....
T Consensus 95 ~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~ 174 (861)
T d2bpta1 95 QIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV 174 (861)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556677788999999999999999998764443 578899999999875 56788999999999999877655433
Q ss_pred -hhhhHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChh
Q 000098 1496 -CLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 1572 (2256)
Q Consensus 1496 -~L~~Ivp~L~~~L--~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 1572 (2256)
.+..+++.++..+ .+.+..||..+..++..+...+.+.... ..
T Consensus 175 ~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~----------------------------------~~ 220 (861)
T d2bpta1 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER----------------------------------EG 220 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS----------------------------------HH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHh----------------------------------hh
Confidence 3445555555555 4667899999999998887655321000 00
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHH-HHhhcCCCHHHHHHHHHHHHHHHHhhC
Q 000098 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV-KKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2256)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L-~~~L~d~~~~VR~~a~~aL~~L~~~~g 1651 (2256)
....+++.+...+.+.++++|..++.++..++... ++.+.+|++.++..+ .....+.++.+|..+...+..+++...
T Consensus 221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~ 298 (861)
T d2bpta1 221 ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY--YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEI 298 (861)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH--GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 11224455566667778888999999998888743 345677887766544 455678899999999998888765321
Q ss_pred ----------c----------CchHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhc
Q 000098 1652 ----------E----------ENFPDLVSWLLDALKS------DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705 (2256)
Q Consensus 1652 ----------~----------~~~~~lip~Ll~~L~~------~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l 1705 (2256)
. ..+..++|.+.+.+.. +.+...+..+..++..+....|...+..+.+.+....
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 378 (861)
T d2bpta1 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhh
Confidence 0 0234566777776654 2334577888888999999999888888888888888
Q ss_pred cCCCHHHHHHHHHHHHHhHhhhCh-hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc-----hhchHHH
Q 000098 1706 SHQRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-----LPLLLPA 1779 (2256)
Q Consensus 1706 ~~~~~~vR~~al~~l~~La~~~g~-~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~-----~~~llp~ 1779 (2256)
.+.++..|.+++.+++.+....+. .+.+|++.++|.+...+.|+++.||..++.+++.+...++... ++.+++.
T Consensus 379 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~ 458 (861)
T d2bpta1 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA 458 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHH
Confidence 999999999999999999887765 4568999999999999999999999999999999988776532 3445555
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH--hcCCc
Q 000098 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVS 1857 (2256)
Q Consensus 1780 L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D~~ 1857 (2256)
+.....+ +.+++..++..+..++......... . . ......++..+... ..+..
T Consensus 459 l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~----------~--~------------~~~~~~~~~~l~~~~~~~~~~ 513 (861)
T d2bpta1 459 CLIGLQD-HPKVATNCSWTIINLVEQLAEATPS----------P--I------------YNFYPALVDGLIGAANRIDNE 513 (861)
T ss_dssp HHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSC----------G--G------------GGGHHHHHHHHHHHHTCSCCG
T ss_pred HHhcccc-ChHHHHHHHHHHHHHHHHhhhcccc----------h--h------------hHHHhhHHHHHHHHHhhhhhh
Confidence 5555544 4555555555555554322111000 0 0 01112233333333 24455
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhc----CCC-----------HHHHHHHHHHHHHHHHhhCcc---
Q 000098 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----SSS-----------SERRQVAGRALGELVRKLGER--- 1919 (2256)
Q Consensus 1858 ~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~----~~~-----------~~~R~~A~~aL~~lv~~~~~~--- 1919 (2256)
..+|..+..++..++...+..+.+++..+.+.+...+. ... ...+.....+++.+++..+..
T Consensus 514 ~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 593 (861)
T d2bpta1 514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 66888888899888888877666666665555443332 111 234455566777777766654
Q ss_pred chhchHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch
Q 000098 1920 VLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2256)
Q Consensus 1920 ~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~ 1998 (2256)
+.+.+++.+.+.+.+. +..+|..++.+++.++...|. .+.+|++.++|.+...+.|.++.||..|..+++.+.+..|.
T Consensus 594 ~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~-~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~ 672 (861)
T d2bpta1 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK-GFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhH-HHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 4566777777766544 466888899999988888775 46799999999999999999999999999999999887765
Q ss_pred h---hHHhHHHHHHHhhccCCchHHHHHHHHHHHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhH
Q 000098 1999 Q---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTI 2075 (2256)
Q Consensus 1999 ~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~I 2075 (2256)
. +.+++++.|++.++++.... .++.....+++.++...|+.|.||++.+
T Consensus 673 ~~~~~~~~i~~~L~~~l~~~~~~~----------------------------~~k~~~~~~l~~i~~~~~~~~~~~l~~~ 724 (861)
T d2bpta1 673 DFRRYSDAMMNVLAQMISNPNARR----------------------------ELKPAVLSVFGDIASNIGADFIPYLNDI 724 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHCTTCCT----------------------------THHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHhCCCCCCH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45667777777666543210 0112346778888888999999999999
Q ss_pred HHHHHHhhCCCC-----------HHHHHHHHHHHHHHHhhcch------hcHHHHHHHHHhhcCCC----ChhhHHHHHH
Q 000098 2076 LPALLSAMGDDD-----------MDVQSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDN----QASIRRSSAY 2134 (2256)
Q Consensus 2076 lp~Ll~~l~~~~-----------~~vr~~a~~al~~l~~~~~~------~~~~~ll~~Ll~~l~~~----~~~vR~~A~~ 2134 (2256)
+|.+.+.+.... .++|+.+..++..++..... ++++.+++.+...+.++ +..++.+++.
T Consensus 725 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 804 (861)
T d2bpta1 725 MALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVG 804 (861)
T ss_dssp HHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHH
Confidence 999999875431 24688888888888775421 45677777666666553 4677889999
Q ss_pred HHHHHHHhchh-hhhhhH-HHHHHHHH-HHcC--CCChHHHHHHHHHHHHhhccC
Q 000098 2135 LIGYFYKNSKL-YLVDEA-PNMISTLI-VLLS--DSDSTTVAAAWEALSRVVASV 2184 (2256)
Q Consensus 2135 ~l~~l~~~~~~-~~~~y~-~~il~~L~-~~l~--D~d~~Vr~~A~~aL~~l~~~l 2184 (2256)
++|.++...+. ...++. ..++..++ ..++ +.+...|+.|-||...+.+++
T Consensus 805 ~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (861)
T d2bpta1 805 LIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHh
Confidence 99999987654 233332 23343433 3333 446778888889887776543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4e-23 Score=290.61 Aligned_cols=749 Identities=15% Similarity=0.179 Sum_probs=483.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCcccCCCCCchhhhhhhhhhhccCCcHHHHHHHHH-----------------
Q 000098 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED----------------- 1119 (2256)
Q Consensus 1057 ~~~~~ll~~~~s~~~~vR~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~----------------- 1119 (2256)
||+.++|++++|||+++|++|+++|++.... +.|.+...+..+. ...+.+.+.|.+|..
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~f~~~L~~i~-~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~ 76 (876)
T d1qgra_ 1 MELITILEKTVSPDRLELEAAQKFLERAAVE---NLPTFLVELSRVL-ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CCHHHHHHHHhCcCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence 5789999999999999999999999876422 1222233333332 344456777777543
Q ss_pred --HHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000098 1120 --IWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2256)
Q Consensus 1120 --~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~~aa~ala~~~~~-~~-~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R 1194 (2256)
.|...+.+.++.+ ..+++.+.+++ .+|+.+|++++.++.. +| +.|+++++.|.+.... .+.....|
T Consensus 77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~--------~~~~~~~~ 147 (876)
T d1qgra_ 77 QQRWLAIDANARREVKNYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN--------PNSTEHMK 147 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC--------TTCCHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcC--------CCCcHHHH
Confidence 3655555555566 77888887766 4677889999988753 45 4566677777665421 12345789
Q ss_pred HHHHHHHHHhhhhhccC----ChhHhHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhccc-----cccchHHHHHHHh
Q 000098 1195 QGIALALHSAADVLRTK----DLPVIMTFLISRALA--DTNADVRGRMLNAGIMIIDKHGRD-----NVSLLFPIFENYL 1263 (2256)
Q Consensus 1195 ~~~~~aL~~l~~~~~~~----~~~~l~~~lv~~~l~--D~~~~VR~~a~~a~~~~i~~~g~~-----~~~~Ll~~l~~~L 1263 (2256)
.++..+|.++...+..+ ..+.++..++ +++. +.+.++|..++.+....+...... ....+++.+...+
T Consensus 148 ~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~-~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 226 (876)
T d1qgra_ 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH-HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999987654432 2344555554 4554 456789999988876655433221 1123444444443
Q ss_pred hccCCChhhhhhhhhHHHHHHHHHHhhhccC-CcchH-HHHHHHHHHcCCCCHHHHHHHHHhhHHhHHhh----------
Q 000098 1264 NKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---------- 1331 (2256)
Q Consensus 1264 ~~~~~~~~~~~~vr~~av~~L~~La~~l~~~-~~~i~-~il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~---------- 1331 (2256)
.. .+..+|..++.+|..+++..... .+++. .+...+...+.+..+.++..+...+..+....
T Consensus 227 ~~------~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 300 (876)
T d1qgra_ 227 QC------PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp TC------SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC------CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 32 12368889999999998765432 12222 23444556677777777766555433332110
Q ss_pred -----c-----C-----chHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCC
Q 000098 1332 -----Q-----D-----EAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390 (2256)
Q Consensus 1332 -----~-----~-----~~~~~l~~Ll~~L~~------~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~ 1390 (2256)
. . ....+++.+...+.. ++++..|..|..++..+....+...+. .+++.+.+.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~i~~~l~~~ 378 (876)
T d1qgra_ 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP--HVLPFIKEHIKNP 378 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHTTCS
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHhhccc
Confidence 0 0 012333333333332 235678999999999999988766553 6778888877765
Q ss_pred CCHHHHHHHHHHHHHHHHHhc-cCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh-----hHHhHHHHHH
Q 000098 1391 NSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLL 1464 (2256)
Q Consensus 1391 ~~~~~Re~al~al~~L~~~l~-~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~-----~v~~ilp~Ll 1464 (2256)
+|..|+++..+++.+.++.. ..+.+++.++++.+...+.|+++.||.++..+++.++..++.. .+..+++.++
T Consensus 379 -~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (876)
T d1qgra_ 379 -DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (876)
T ss_dssp -SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHH
Confidence 89999999999988877654 4568899999999999999999999999999999998876543 2466777777
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhCh--------------hhHhhhhhhHHHHHHHhhcCC---CHHHHHHHHHHHHHHH
Q 000098 1465 KGLEDKAWRTKQSSVQLLGAMAYCAP--------------QQLSQCLPKIVPKLTEVLTDT---HPKVQSAGQTALQQVG 1527 (2256)
Q Consensus 1465 ~~L~~~~w~~R~~a~~~Lg~la~~~p--------------~~l~~~L~~Ivp~L~~~L~D~---~~~VR~aA~~aL~~l~ 1527 (2256)
..+.+ +++++..++.++..+..... ..+..+++.+++.+...+.+. +..++..+..++..+.
T Consensus 458 ~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 536 (876)
T d1qgra_ 458 EGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIV 536 (876)
T ss_dssp HHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhh
Confidence 77754 67888888888888876432 224567788888888888643 5678899998888887
Q ss_pred hhcCc---hhHHhHHHHHHhhh----CCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1528 SVIKN---PEIASLVPTLLMGL----TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2256)
Q Consensus 1528 ~~i~~---~~i~~lv~~Ll~~l----~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l 1600 (2256)
..... +.+..+++.++..+ ..... ....... . ...+.+...+..+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------------~~~~~~~-------~-------~~~~~~~~l~~~l 588 (876)
T d1qgra_ 537 KNSAKDCYPAVQKTTLVIMERLQQVLQMESH--------------IQSTSDR-------I-------QFNDLQSLLCATL 588 (876)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHHHHHTTTTS--------------CCSTTHH-------H-------HHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hcchhhh-------H-------HHHHHHHHHHHHH
Confidence 66543 22333333332221 11100 0000000 0 0001222233344
Q ss_pred HHHhhhcCCCCcchhhhhhhhHHHHHhhc--CCCHHHHHHHHHHHHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHH
Q 000098 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVER 1675 (2256)
Q Consensus 1601 ~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~--d~~~~VR~~a~~aL~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R 1675 (2256)
..+...++ .....++.+.+++.+...+. +++..+++.+..+++.++..+|+. |++.++|.+...+.+..++.+|
T Consensus 589 ~~~~~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~ 667 (876)
T d1qgra_ 589 QNVLRKVQ-HQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVC 667 (876)
T ss_dssp HHHHTTSC-HHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHcc-hhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 44443221 12345667788888888876 356789999999999999998865 6788999999999987778889
Q ss_pred HHHHHHHHHHHHHhcHh---HHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC-
Q 000098 1676 SGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE- 1749 (2256)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~---~l~~ll~~ll~~l~~~--~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~- 1749 (2256)
..+...++.+....+.. +.+.+++.++..++++ +..+|..++.++|.++...|..|.+|++.++|.+.+.+...
T Consensus 668 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~ 747 (876)
T d1qgra_ 668 LAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQV 747 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhccc
Confidence 88888899988877765 6678888888888765 57899999999999999999999999999999998876532
Q ss_pred ---CHH-------HHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000098 1750 ---NES-------VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2256)
Q Consensus 1750 ---~~~-------VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ 1819 (2256)
+.+ +|++++.++..++..+... ..
T Consensus 748 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~--------------------------------------~~-------- 781 (876)
T d1qgra_ 748 DKSDYDMVDYLNELRESCLEAYTGIVQGLKGD--------------------------------------QE-------- 781 (876)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCS--------------------------------------SS--------
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhccc--------------------------------------cc--------
Confidence 221 2333333332222211110 00
Q ss_pred CCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHhcChhHHHHHH---HHHHHHHHHHh
Q 000098 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIM---PVLMNTLISSL 1894 (2256)
Q Consensus 1820 ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~~l---~~Ll~~L~~~L 1894 (2256)
....... .+ .+....++..+... ..+.+..++..++.+++.++...|....+.+ |.+.+.+.+..
T Consensus 782 -~~~~~~~--------~~-~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~ 851 (876)
T d1qgra_ 782 -NVHPDVM--------LV-QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp -SCCGGGG--------GS-GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred -cchhhHH--------HH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 0000000 00 00111111111111 2345667888888999998887766554444 66666777777
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 000098 1895 ASSSSERRQVAGRALGELVR 1914 (2256)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~ 1914 (2256)
.++++..|..|.++...+-+
T Consensus 852 ~s~~~~~~~~a~~~~~~~~~ 871 (876)
T d1qgra_ 852 RSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HCSCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHH
Confidence 88999999988887766544
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-21 Score=271.27 Aligned_cols=737 Identities=15% Similarity=0.171 Sum_probs=483.0
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhh----
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~---- 1207 (2256)
..+|+...++|..+|+.|.+.|.++.+.. |+.+..+++.+.+ ...+-+.|..|+..|++....
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~------------~~~~~~iR~~A~i~lKn~i~~~~~~ 71 (876)
T d1qgra_ 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN------------PGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHHhhccccc
Confidence 35666666899999999999999887664 3433333333321 123357899999999987642
Q ss_pred -----------hccCChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-hccccccchHHHHHHHhhccCCChhhhhh
Q 000098 1208 -----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2256)
Q Consensus 1208 -----------~~~~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~ 1275 (2256)
++++..+.+.+.++ +++.+.+. +|..+..++..++.. .+.+.|++++|.+.+.+.+... ...
T Consensus 72 ~~~~~~~~~~~i~~~~k~~ik~~ll-~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~----~~~ 145 (876)
T d1qgra_ 72 IKAQYQQRWLAIDANARREVKNYVL-HTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEH 145 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHH
T ss_pred hhhhhhcccccCCHHHHHHHHHHHH-HHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCC----cHH
Confidence 11222333555553 57777665 454556665555544 3446799999999888765222 225
Q ss_pred hhhHHHHHHHHHHhhhccC--CcchHHHHHHHHHHcCC--CCHHHHHHHHHhhHHhHHhhcC-----chHHHHHHHHHHH
Q 000098 1276 VREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQL 1346 (2256)
Q Consensus 1276 vr~~av~~L~~La~~l~~~--~~~i~~il~~Ll~~L~~--~~~~Vq~~~~~~L~~lv~~~~~-----~~~~~l~~Ll~~L 1346 (2256)
+|.+++.+++.+++.+.+. .++...+++.++..+.+ ++..++..+..++......... .....+...+..+
T Consensus 146 ~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~ 225 (876)
T d1qgra_ 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 7889999999998876532 35567788888888854 4578888887777666544321 2344555666666
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcccchh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc------------
Q 000098 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------------ 1412 (2256)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~--~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~------------ 1412 (2256)
..++++.+|..+..+|..+++......... ..+.+.+.....++ +...+..++..+..+++....
T Consensus 226 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 304 (876)
T d1qgra_ 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 677789999999999999998765332211 12444444455544 667777777777777653110
Q ss_pred --------C-chHhHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHH
Q 000098 1413 --------L-FEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2256)
Q Consensus 1413 --------~-~~pyv~~llp~ll~~l~-------D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~ 1476 (2256)
. ...+...++|.+...+. |.+..+|.++..++..+....+...++.+++.+.+.+.+.+|+.|.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~ 384 (876)
T d1qgra_ 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHH
Confidence 1 12334456666666543 2344699999999999998888877888999999999999999999
Q ss_pred HHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch-----hHHhHHHHHHhhhCCCC
Q 000098 1477 SSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLTDPN 1550 (2256)
Q Consensus 1477 ~a~~~Lg~la~~~-p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----~i~~lv~~Ll~~l~d~~ 1550 (2256)
+++..++.++... +..+..+++.+++.+.+.+.|+++.||.+++++++.+++.+++. ++..+++.+...+.+
T Consensus 385 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 462 (876)
T d1qgra_ 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-- 462 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC--
Confidence 9999999998764 56678889999999999999999999999999999999877542 234455555554433
Q ss_pred hhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc------------CCCCcchhhhh
Q 000098 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV------------TEPKDMIPYIG 1618 (2256)
Q Consensus 1551 ~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l------------~~~~~l~~~l~ 1618 (2256)
++.++..++.++.++.... .....+.+|++
T Consensus 463 --------------------------------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (876)
T d1qgra_ 463 --------------------------------------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE 504 (876)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH
T ss_pred --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2344444444444443311 01234667888
Q ss_pred hhhHHHHHhhcC---CCHHHHHHHHHHHHHHHHhhCcCc---hHH----HHHHHHHHhhcC-----CCHH-----HHHHH
Q 000098 1619 LLLPEVKKVLVD---PIPEVRSVAARAIGSLIRGMGEEN---FPD----LVSWLLDALKSD-----NSNV-----ERSGA 1678 (2256)
Q Consensus 1619 ~Ll~~L~~~L~d---~~~~VR~~a~~aL~~L~~~~g~~~---~~~----lip~Ll~~L~~~-----~~~~-----~R~~a 1678 (2256)
.+++.+...+.+ ....++..+..++..+......+. +.. +++.+...+... .... .+...
T Consensus 505 ~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 584 (876)
T d1qgra_ 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHH
Confidence 888888888864 356788899999998887766542 223 333333333221 1111 11222
Q ss_pred HHHHHHHHHHhcHhH----HHHHHHHHHHhccC--CCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCC-CH
Q 000098 1679 AQGLSEVLAALGTVY----FEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NE 1751 (2256)
Q Consensus 1679 a~~L~~i~~~~g~~~----l~~ll~~ll~~l~~--~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~-~~ 1751 (2256)
...+..++...+.+. .+.+++.+.+.+.. .+..+++.++.+++.++...|..|.+|++.++|.++..+.+. ++
T Consensus 585 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~ 664 (876)
T d1qgra_ 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEY 664 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcH
Confidence 334555555555543 35566666666553 467899999999999999999999999999999999998765 46
Q ss_pred HHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHH
Q 000098 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2256)
Q Consensus 1752 ~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~ 1831 (2256)
.+|..+...+..+....+.. +.|.+
T Consensus 665 ~v~~~a~~~l~~l~~~~~~~----~~~~~--------------------------------------------------- 689 (876)
T d1qgra_ 665 QVCLAAVGLVGDLCRALQSN----IIPFC--------------------------------------------------- 689 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGG----GHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHh----hhhhH---------------------------------------------------
Confidence 78888887777766544432 11111
Q ss_pred HHHHHhcchhhHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhcCC----CH------
Q 000098 1832 AIIEVLGRDKRNEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS----SS------ 1899 (2256)
Q Consensus 1832 ~l~~~Lg~e~~~~vl~~L~~~~~D~--~~~Vr~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~----~~------ 1899 (2256)
+.++..++..+.+. ...+|..++.+++.++...+..+.+|++.+++.+....... +.
T Consensus 690 -----------~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~ 758 (876)
T d1qgra_ 690 -----------DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYL 758 (876)
T ss_dssp -----------HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHH
Confidence 11112222222221 23467777777777777777777788888888776655421 11
Q ss_pred -HHHHHHHHHHHHHHHhhCcc-------------chhchHHHHhhhcC--CCChhhHHhHHHHHHHHHHhhChhhhHhhH
Q 000098 1900 -ERRQVAGRALGELVRKLGER-------------VLPSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2256)
Q Consensus 1900 -~~R~~A~~aL~~lv~~~~~~-------------~l~~llp~L~~~l~--d~~~~vR~~a~~aL~eii~~~~~~~l~~~l 1963 (2256)
..|.....+++.++..+... +.+.++..+..... +.+..++..++..++.++...|......+.
T Consensus 759 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~ 838 (876)
T d1qgra_ 759 NELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 838 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777777777643211 12223332222222 335677888888899999988876544333
Q ss_pred --hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000098 1964 --DELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2256)
Q Consensus 1964 --~~li~~l~~~L~D~~~~VR~~A~~al~~l~~ 1994 (2256)
+.+.+.+.....++++..|..|..+...+.+
T Consensus 839 ~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~ 871 (876)
T d1qgra_ 839 ARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp TSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4566777788889999999998877666654
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.3e-14 Score=186.09 Aligned_cols=383 Identities=13% Similarity=0.151 Sum_probs=268.3
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHhhhhhcc-
Q 000098 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRT- 1210 (2256)
Q Consensus 1133 ~~ll~~l~~~~~~vR~~aa~ala~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~R~~~~~aL~~l~~~~~~- 1210 (2256)
..+++.+.++|..+|+.|.+.|-.+.... |+.+..++..+.+ ...+-..|..++..|++.......
T Consensus 3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~------------~~~~~~~R~~A~i~lk~~l~~~~~~ 70 (458)
T d1ibrb_ 3 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN------------PGNSQVARVAAGLQIKNSLTSKDPD 70 (458)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHHhhccCch
Confidence 35677777899999999999999888754 3444444343321 123346899999888877643211
Q ss_pred --------------CChhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccCCChhhhhhh
Q 000098 1211 --------------KDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276 (2256)
Q Consensus 1211 --------------~~~~~l~~~lv~~~l~D~~~~VR~~a~~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~~~~~~v 1276 (2256)
+....+.+.+ .+++.+.++.+|..+...+..+....+...++.+++.+...+.+... +..+
T Consensus 71 ~~~~~~~~~~~l~~~~~~~i~~~l-l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~ 145 (458)
T d1ibrb_ 71 IKAQYQQRWLAIDANARREVKNYV-LQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEHM 145 (458)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH-HHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHHH
T ss_pred hhhHHhhhhccCCHHHHHHHHHHH-HhccCCCcHHHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcc----hHHH
Confidence 1122344444 35777777666654433333333445566789999998888765222 2256
Q ss_pred hhHHHHHHHHHHhhhccC--CcchHHHHHHHHHHcCC--CCHHHHHHHHHhhHHhHHhhcC-----chHHHHHHHHHHHh
Q 000098 1277 REGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLM 1347 (2256)
Q Consensus 1277 r~~av~~L~~La~~l~~~--~~~i~~il~~Ll~~L~~--~~~~Vq~~~~~~L~~lv~~~~~-----~~~~~l~~Ll~~L~ 1347 (2256)
+..++..++.++...... .+....+++.+...+.+ ++..++..+..++..+...... .....+...+..+.
T Consensus 146 ~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (458)
T d1ibrb_ 146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 225 (458)
T ss_dssp HHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHh
Confidence 778888998888765432 34567788888888864 5678998888888777654321 12334445556666
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcccch--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-------------
Q 000098 1348 KSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------------- 1412 (2256)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~lv~~~g~~~~~--~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~------------- 1412 (2256)
.++++.+|..+..+|..++...+..... ...+.+.+.....+. +...|..++..+..+++....
T Consensus 226 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~ 304 (458)
T d1ibrb_ 226 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 304 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhh
Confidence 7778999999999999999876532211 112334444444444 678888888888888764210
Q ss_pred --------CchHhHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHH
Q 000098 1413 --------LFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477 (2256)
Q Consensus 1413 --------~~~pyv~~llp~ll~~l~-------D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~ 1477 (2256)
....+...+.|.+..... |.+..+|.++..++..++...+.+.++.++|.+.+.+.+++|+.|.+
T Consensus 305 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~a 384 (458)
T d1ibrb_ 305 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 384 (458)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHH
Confidence 012345566676666553 33457999999999999988887777889999999999999999999
Q ss_pred HHHHHHHHHhhC-hhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000098 1478 SVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2256)
Q Consensus 1478 a~~~Lg~la~~~-p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 1533 (2256)
|+.+||.+++.+ ++.+..+++.++|.+.+.++|+++.||.+|+++|+++++.++++
T Consensus 385 al~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp HHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999865 56677889999999999999999999999999999999987653
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.1e-13 Score=171.79 Aligned_cols=410 Identities=15% Similarity=0.130 Sum_probs=286.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhHHhHHhhcCchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCcccchhhcHHH
Q 000098 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2256)
Q Consensus 1303 ~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~~l~~Ll~~L~~~~-~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~ 1381 (2256)
..+++.+.+|+.++|..+.+.|..+.. ++.++++..++..+.++. +..+|..|+..|...+.....
T Consensus 3 ~~il~~~~s~d~~~r~~A~~~L~~~~~---~~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~---------- 69 (458)
T d1ibrb_ 3 ITILEKTVSPDRLELEAAQKFLERAAV---ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP---------- 69 (458)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH----------
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCc----------
Confidence 345667778999999888777766653 235677888888776653 578999888777665543211
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhh-hHhhHHhHH
Q 000098 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-SAQGVKLVL 1460 (2256)
Q Consensus 1382 ~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l-~~~~v~~il 1460 (2256)
..+......+ +..-......+.+.++..+.+++..+|.+ ..++..++... +...++.++
T Consensus 70 ------------~~~~~~~~~~-------~~l~~~~~~~i~~~ll~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 129 (458)
T d1ibrb_ 70 ------------DIKAQYQQRW-------LAIDANARREVKNYVLQTLGTETYRPSSA-SQCVAGIACAEIPVNQWPELI 129 (458)
T ss_dssp ------------HHHHHHHHHH-------HTSCHHHHHHHHHHHHHHTTCCCSSSCSH-HHHHHHHHHHHGGGTCCTTHH
T ss_pred ------------hhhhHHhhhh-------ccCCHHHHHHHHHHHHhccCCCcHHHHHH-HHHHHHHHHHhCCcccCcchh
Confidence 1111111111 11112333456667777888877665554 45555555443 333457888
Q ss_pred HHHHHhccC--CChhHHHHHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcCchhH
Q 000098 1461 PSLLKGLED--KAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTD--THPKVQSAGQTALQQVGSVIKNPEI 1535 (2256)
Q Consensus 1461 p~Ll~~L~~--~~w~~R~~a~~~Lg~la~~~p-~~l~~~L~~Ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~~i~~~~i 1535 (2256)
+.+++.+.+ ..|..+.+++.+++.+..... .....+.+.+++.+...+.+ ....||..|..++..+.........
T Consensus 130 ~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 209 (458)
T d1ibrb_ 130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 209 (458)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999888864 567889999999999987754 45566778899999988864 5678999999999888754321100
Q ss_pred HhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh
Q 000098 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2256)
Q Consensus 1536 ~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~ 1615 (2256)
.......+.+.+...+.+.++++|..++.++..+++. .++.+.+
T Consensus 210 ----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~--~~~~~~~ 253 (458)
T d1ibrb_ 210 ----------------------------------KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL--YYQYMET 253 (458)
T ss_dssp ----------------------------------SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--CGGGCTT
T ss_pred ----------------------------------hHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 0011123445556666777889999999999998874 3345667
Q ss_pred hhhhhhH-HHHHhhcCCCHHHHHHHHHHHHHHHHhhC---------------c----C-----chHHHHHHHHHHhhc--
Q 000098 1616 YIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMG---------------E----E-----NFPDLVSWLLDALKS-- 1668 (2256)
Q Consensus 1616 ~l~~Ll~-~L~~~L~d~~~~VR~~a~~aL~~L~~~~g---------------~----~-----~~~~lip~Ll~~L~~-- 1668 (2256)
|+..++. .+.....+.+..++..+...+..+++... . . ..+.++|.+.+.+.+
T Consensus 254 ~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 333 (458)
T d1ibrb_ 254 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 333 (458)
T ss_dssp TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcch
Confidence 7665554 44566778899999999999988875320 0 0 134456666665543
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh-hChhHHHHHHHHHHHHH
Q 000098 1669 ----DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAIL 1743 (2256)
Q Consensus 1669 ----~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~-~g~~f~~yl~~ilp~Ll 1743 (2256)
+.++..|..++..+..++..+|.+.++.+++.+.+.+++++|.+|.+++.+++.++.. .+..+.+|++.++|.++
T Consensus 334 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~ 413 (458)
T d1ibrb_ 334 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 413 (458)
T ss_dssp SSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHH
T ss_pred hhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Confidence 2334478888899999999999888899999999999999999999999999999864 45567789999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhccch-hchHHHHH
Q 000098 1744 DGLADENESVRDAALGAGHVLVEHYATTSL-PLLLPAVE 1781 (2256)
Q Consensus 1744 ~~L~d~~~~VR~~Al~al~~iv~~~~~~~~-~~llp~L~ 1781 (2256)
..++|+++.||.+|+.+++.+.+.++.... +..+|.+.
T Consensus 414 ~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll 452 (458)
T d1ibrb_ 414 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 452 (458)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 999999999999999999999887765432 33344443
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=2.3e-09 Score=150.49 Aligned_cols=380 Identities=12% Similarity=0.115 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhc------cCCChhHHHHHHHHHHHHHhhCh------------hhHhhh
Q 000098 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL------EDKAWRTKQSSVQLLGAMAYCAP------------QQLSQC 1496 (2256)
Q Consensus 1435 ~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L------~~~~w~~R~~a~~~Lg~la~~~p------------~~l~~~ 1496 (2256)
..|.++...+..+....+......+++.+.+.+ .+.+|+.|.+++.++|.++.... .++...
T Consensus 376 ~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 455 (959)
T d1wa5c_ 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (959)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHH
Confidence 567777888888887776655555555444433 24789999999999999875321 012222
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhh
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 1576 (2256)
+...+...+....++++.+|..+++.++.+++...++.+..+++.+...+.++
T Consensus 456 l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~--------------------------- 508 (959)
T d1wa5c_ 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTD--------------------------- 508 (959)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCS---------------------------
T ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCC---------------------------
Confidence 22222222333456778999999999999988766555555555555555544
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC---------CCcchhhhhhhhHHHHHhhcCCCHH-----HHHHHHHH
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE---------PKDMIPYIGLLLPEVKKVLVDPIPE-----VRSVAARA 1642 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~---------~~~l~~~l~~Ll~~L~~~L~d~~~~-----VR~~a~~a 1642 (2256)
+..+|..|+.++..++..... ...+.||++.++..+...+.+.... .......+
T Consensus 509 ------------~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~ 576 (959)
T d1wa5c_ 509 ------------EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576 (959)
T ss_dssp ------------CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred ------------chhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 445666667777776653221 1346788888888888887654322 22457788
Q ss_pred HHHHHHhhCcC---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccC-CCHHHHHHHHH
Q 000098 1643 IGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLT 1718 (2256)
Q Consensus 1643 L~~L~~~~g~~---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~-~~~~vR~~al~ 1718 (2256)
++.++...++. +.+.+++.+...+... .++ .++......+.
T Consensus 577 l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~-----------------------------------~~~~~~~~~~~~~~e 621 (959)
T d1wa5c_ 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIM-----------------------------------AKNPSNPRFTHYTFE 621 (959)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHHHHHHH-----------------------------------TTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------hcCccchHHHHHHHH
Confidence 88888877765 3344444444333210 001 12222333334
Q ss_pred HHHHhHhhhCh-hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc--cchhchHHHHHhhcCCCCHHHHHHH
Q 000098 1719 LFKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT--TSLPLLLPAVEDGIFNDNWRIRQSS 1795 (2256)
Q Consensus 1719 ~l~~La~~~g~-~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~--~~~~~llp~L~~~l~d~~~~iR~~s 1795 (2256)
+++.+....++ .+..+.+.++|.+...+..........+...+..++..... ..+..+++.+........-.....+
T Consensus 622 ~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 701 (959)
T d1wa5c_ 622 SIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAV 701 (959)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHH
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHH
Confidence 44444443333 23445555666666555544444444455555444443321 1122334443322111111112223
Q ss_pred HHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC
Q 000098 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2256)
Q Consensus 1796 v~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~ 1875 (2256)
..++..++...... +. ....++..+.....+.. .+..+..++..++.+.
T Consensus 702 ~~~l~~~~~~~~~~---------------------------~~--~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~ 750 (959)
T d1wa5c_ 702 TRLLKSFIKTDSSI---------------------------FP--DLVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLI 750 (959)
T ss_dssp HHHHHHHHHHHGGG---------------------------CS--CSHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCHHh---------------------------hc--chHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHC
Confidence 33333332110000 00 00112222222333222 1345667777788777
Q ss_pred hh-HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhCcc
Q 000098 1876 PK-TLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGER 1919 (2256)
Q Consensus 1876 ~~-~l~~~l~~Ll~~L~~~L~~~-~~~~R~~A~~aL~~lv~~~~~~ 1919 (2256)
|. .+.++++.++..+.+.+... ...........++.++-..+..
T Consensus 751 ~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (959)
T d1wa5c_ 751 DMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796 (959)
T ss_dssp CHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHH
Confidence 64 56789999999999888754 3555555666677766555543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.1e-09 Score=142.92 Aligned_cols=461 Identities=13% Similarity=0.065 Sum_probs=294.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC-----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-ccc
Q 000098 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSL 1374 (2256)
Q Consensus 1301 il~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~-----~~~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~-~~~ 1374 (2256)
.+|.|+..|++.+..+++.++.++..+...... ...+.++.++..|.+..+..+++.|+.+|..+...-.. ..+
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 97 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 367888888999999999998888777543211 12467888888887777788999999999988653211 111
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~py-v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~ 1453 (2256)
-....++.+...+.+. +...+..+..++..++......-... -...+|.++..++++++.++..+..++..++..-..
T Consensus 98 ~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 176 (529)
T d1jdha_ 98 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhH
Confidence 1235678888887765 78899999999998887654311111 234688899999999999999999999988754322
Q ss_pred hh---H-HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000098 1454 QG---V-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2256)
Q Consensus 1454 ~~---v-~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2256)
.. . ...++.++..+. .+....+..++.++..++........-.-...++.+...+.+.+++++..++.++..+..
T Consensus 177 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~ 256 (529)
T d1jdha_ 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccc
Confidence 21 1 235677777775 455678888888888887543222111113678889999999999999999999999876
Q ss_pred hcCch-hHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCC--hhhHhhHHHHHHHhh--cCCCHHHHHHHHHHHHH
Q 000098 1529 VIKNP-EIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVD--APSLALLVPIVHRGL--RERSAETKKKAAQIVGN 1602 (2256)
Q Consensus 1529 ~i~~~-~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~--~~~l~~i~p~L~~~L--~d~~~~vR~~a~~~l~~ 1602 (2256)
..... .....++.|.+.+.+++..++. +...+.......... .-.-...++.+...+ ....++++..++.++.+
T Consensus 257 ~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~ 336 (529)
T d1jdha_ 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhc
Confidence 54433 2367889999999888777763 455554421111000 001123345555544 24567888888889988
Q ss_pred HhhhcCCCCcchh--hhhhhhHHHHHhhcCC-CHHHHHHHHHHHHHHHHhhCcC--c-hHHHHHHHHHHhhcCCCH----
Q 000098 1603 MCSLVTEPKDMIP--YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE--N-FPDLVSWLLDALKSDNSN---- 1672 (2256)
Q Consensus 1603 L~~~l~~~~~l~~--~l~~Ll~~L~~~L~d~-~~~VR~~a~~aL~~L~~~~g~~--~-~~~lip~Ll~~L~~~~~~---- 1672 (2256)
++........... .....++.+...+.++ .+.++..+..++..++..-... . -...+|.+.+.+.+....
T Consensus 337 l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~ 416 (529)
T d1jdha_ 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred ccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHH
Confidence 8752111011111 1224567777777654 4667778888888776432110 0 123566666666542111
Q ss_pred -----------------HHHHHHHHHHHHHHHHhc-HhHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHH
Q 000098 1673 -----------------VERSGAAQGLSEVLAALG-TVYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2256)
Q Consensus 1673 -----------------~~R~~aa~~L~~i~~~~g-~~~l--~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~ 1732 (2256)
......+.++..+..... ...+ ...++.++..+.++++.+|..++.++..++.. ++-.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~ 494 (529)
T d1jdha_ 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAA 494 (529)
T ss_dssp ---------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHH
T ss_pred HHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--hhhH
Confidence 112222222322221110 0111 34567888899999999999999999887643 2212
Q ss_pred HHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000098 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVL 1764 (2256)
Q Consensus 1733 ~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~i 1764 (2256)
..+ ...++.+.+.+.++++.+|..+..++..|
T Consensus 495 ~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 222 24678888999999999999888887654
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.3e-10 Score=144.52 Aligned_cols=461 Identities=12% Similarity=0.066 Sum_probs=294.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc--cchhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000098 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS--SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2256)
Q Consensus 1337 ~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~--~~~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~ 1414 (2256)
..++.|...| ++++..+|+.|+..+..+...-... ......+++.+...+.+..+...++.+..++..++..... .
T Consensus 17 ~aip~L~~lL-~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~-~ 94 (529)
T d1jdha_ 17 RAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-L 94 (529)
T ss_dssp CHHHHHHHHH-TCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH-H
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-H
Confidence 4467666655 4566899999999999987643211 1112257888888887776888999898888887643211 0
Q ss_pred hHhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHh--hH--HhHHHHHHHhccCCChhHHHHHHHHHHHHHhhC
Q 000098 1415 EPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2256)
Q Consensus 1415 ~pyv-~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~ 1489 (2256)
...+ ...+|.++..++++++.++..|..++..++...+.. .+ ...+|.++..+.+.+...+..++.+++.++...
T Consensus 95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 174 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence 1111 146899999999999999999999999887654432 12 457899999999999999999999999998765
Q ss_pred hhhHh-hhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcCch--hH-HhHHHHHHhhhCCCChhHH-HHHHHHHhc
Q 000098 1490 PQQLS-QCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EI-ASLVPTLLMGLTDPNDHTK-YSLDILLQT 1563 (2256)
Q Consensus 1490 p~~l~-~~L~~Ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~--~i-~~lv~~Ll~~l~d~~~~vr-~al~~L~~~ 1563 (2256)
+..-. ..-...++.+..++. .+++.++..+..++..++..-.+. .+ ...++.|...+.+++..++ .++..+...
T Consensus 175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence 43311 122346777777775 455789999999999887543222 12 4577888999988887665 455555442
Q ss_pred ccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcch-hhhhhhhHHHHHhh--cCCCHHHHHHHH
Q 000098 1564 TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVL--VDPIPEVRSVAA 1640 (2256)
Q Consensus 1564 ~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~-~~l~~Ll~~L~~~L--~d~~~~VR~~a~ 1640 (2256)
.... .........++.+.+.+.+.+..++..++.++.+++. .+..... -.-...++.+...+ ..+.+.+++.+.
T Consensus 255 s~~~-~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~ 331 (529)
T d1jdha_ 255 SDAA-TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HTTC-TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--TCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccc-cchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc--chhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHH
Confidence 1111 1111234578889999999999999999999999875 2211100 01123455555555 356788999999
Q ss_pred HHHHHHHHhhCcC-c------hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh-HH--HHHHHHHHHhccCC--
Q 000098 1641 RAIGSLIRGMGEE-N------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ-- 1708 (2256)
Q Consensus 1641 ~aL~~L~~~~g~~-~------~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-~l--~~ll~~ll~~l~~~-- 1708 (2256)
.++..++...... . ....++.+++.+..+.....+..++..+..+...-... .+ ...++.++..+.+.
T Consensus 332 ~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 411 (529)
T d1jdha_ 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCH
Confidence 9998887432111 0 12346777777777666555565555665553221111 11 22444444443321
Q ss_pred --------------------CHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 000098 1709 --------------------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2256)
Q Consensus 1709 --------------------~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~ 1768 (2256)
...+++..+.++..++........---...++.+.+.+.++++.+|..+..++..+...-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 491 (529)
T d1jdha_ 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp HHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence 133445555555555432221111111246788999999999999999999887764211
Q ss_pred hc-cch--hchHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1769 AT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1769 ~~-~~~--~~llp~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
.. +.+ ...++.|.+.+.+.++.+|..+...+..+
T Consensus 492 ~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 00 011 12578888999999999999988877654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=8.5e-08 Score=134.20 Aligned_cols=669 Identities=11% Similarity=0.075 Sum_probs=338.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccchhhcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh-cc-----Cc
Q 000098 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN-SAKRREGALLAFECLCEKL-GR-----LF 1414 (2256)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~~~~~~~~il~~L~~~l~~~~-~~~~Re~al~al~~L~~~l-~~-----~~ 1414 (2256)
+.+.|..+.++..|+.|-..|..+-+.. +....+.+.+.++. +..+|..|...|....... .. .+
T Consensus 7 l~~ll~~s~~~~~~k~Ae~~L~~~~~~p--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i 78 (959)
T d1wa5c_ 7 VAKFLAESVIASTAKTSERNLRQLETQD--------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (959)
T ss_dssp HHHHHHHTTSGGGHHHHHHHHHHHHTST--------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHcCC--------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 3333444455678999998888765432 34445555555443 5678988887777666543 21 12
Q ss_pred hHh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChh--
Q 000098 1415 EPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-- 1491 (2256)
Q Consensus 1415 ~py-v~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~-- 1491 (2256)
.+- -..+-..++..+.+++..+|.....++..++..-.+..++.++|.+.+.+.++++..+.+++.++..+++....
T Consensus 79 ~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~ 158 (959)
T d1wa5c_ 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (959)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 22234455556667788999999999999988755677889999999999999999999999999999865321
Q ss_pred ---h----HhhhhhhHHHHHHHhhcC-----CCHHHHHHHHHHHHH----HHhhcC-------chhH----HhHHHHHHh
Q 000098 1492 ---Q----LSQCLPKIVPKLTEVLTD-----THPKVQSAGQTALQQ----VGSVIK-------NPEI----ASLVPTLLM 1544 (2256)
Q Consensus 1492 ---~----l~~~L~~Ivp~L~~~L~D-----~~~~VR~aA~~aL~~----l~~~i~-------~~~i----~~lv~~Ll~ 1544 (2256)
. +...++.+.+.+...+.. ........+...+.. +.+.+. ...+ ..++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (959)
T d1wa5c_ 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK 238 (959)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 1 111222333333322210 000111111111111 111100 0011 111111111
Q ss_pred hhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHH
Q 000098 1545 GLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 1624 (2256)
Q Consensus 1545 ~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L 1624 (2256)
.+..+.. .....+. ..........+...+.++..+.+. .++.+.+|++.+++.+
T Consensus 239 ~l~~~~~-------------~~~~~~~-----------~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~ 292 (959)
T d1wa5c_ 239 YLSYSNP-------------LLEDPDE-----------TEHASVLIKVKSSIQELVQLYTTR--YEDVFGPMINEFIQIT 292 (959)
T ss_dssp HHSCCSC-------------CCC-----------------CCCHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHH
T ss_pred HHhcccc-------------cccCchh-----------hhhhhHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence 1111100 0000000 000000124555555566555552 2234556666666655
Q ss_pred HHhhc-----CCCHHHHHHHHHHHHHHHHhhC-------cCchHHHHHHHH-HHhh----------------------cC
Q 000098 1625 KKVLV-----DPIPEVRSVAARAIGSLIRGMG-------EENFPDLVSWLL-DALK----------------------SD 1669 (2256)
Q Consensus 1625 ~~~L~-----d~~~~VR~~a~~aL~~L~~~~g-------~~~~~~lip~Ll-~~L~----------------------~~ 1669 (2256)
.+.+. .....+...+...+..+++... ..++..++..++ ..+. .+
T Consensus 293 ~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~ 372 (959)
T d1wa5c_ 293 WNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGS 372 (959)
T ss_dssp HHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhc
Confidence 55442 1234444455555555443211 011222222111 1111 11
Q ss_pred CCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhHhhhC------------hhH
Q 000098 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC------SHQRASVRDGYLTLFKYLPRSLG------------VQF 1731 (2256)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l------~~~~~~vR~~al~~l~~La~~~g------------~~f 1731 (2256)
..+..|..+...+..+....+......+++.+...+ .+.++..|++++.+++.+....+ .++
T Consensus 373 ~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 452 (959)
T d1wa5c_ 373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (959)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred ccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence 112245555566677776666554444444443332 23578889999998888764321 134
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCc
Q 000098 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2256)
Q Consensus 1732 ~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d~~~~iR~~sv~llg~ll~~~~g~~~ 1811 (2256)
.+++...+.+.+....++.+.+|..++..+........
T Consensus 453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~------------------------------------------ 490 (959)
T d1wa5c_ 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT------------------------------------------ 490 (959)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC------------------------------------------
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc------------------------------------------
Confidence 44444444444444444445555544444333211111
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC-----------hhHHH
Q 000098 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----------PKTLK 1880 (2256)
Q Consensus 1812 ~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~-----------~~~l~ 1880 (2256)
.+....++..+...+.|.+..||..|..++..+.... ...+.
T Consensus 491 ---------------------------~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~ 543 (959)
T d1wa5c_ 491 ---------------------------KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS 543 (959)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred ---------------------------HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHH
Confidence 1112234445555566777777877777777776432 24567
Q ss_pred HHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHhhCcc---chhchHHHHhhh----cCCC-ChhhHHhHHHHH
Q 000098 1881 EIMPVLMNTLISSLASSSSER-----RQVAGRALGELVRKLGER---VLPSIIPILSRG----LKDP-SASRRQGVCIGL 1947 (2256)
Q Consensus 1881 ~~l~~Ll~~L~~~L~~~~~~~-----R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~----l~d~-~~~vR~~a~~aL 1947 (2256)
++++.+++.+...+....... ......+++.++...++. +.+.+++.+... .+++ ++.....+..++
T Consensus 544 p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l 623 (959)
T d1wa5c_ 544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESI 623 (959)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 778887777777665433211 234778899999888765 344555554433 2333 455566666777
Q ss_pred HHHHHhhChhhhHhhHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHhhccCCchHHHHHHHHH
Q 000098 1948 SEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQ 2027 (2256)
Q Consensus 1948 ~eii~~~~~~~l~~~l~~li~~l~~~L~D~~~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~ 2027 (2256)
+.++...+++....+...++|.+...+.....+....+...+..+..
T Consensus 624 ~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------- 670 (959)
T d1wa5c_ 624 GAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE--------------------------------- 670 (959)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH---------------------------------
Confidence 77777666665555556666766655543333222222211111111
Q ss_pred HHhhhcccchhhhhhhhhcCchhhhHHHHHHHHHHHhCCCccccHhhHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhcc
Q 000098 2028 ILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVID 2106 (2256)
Q Consensus 2028 il~~~~~~~lp~li~~L~~~p~~~~~~~aL~~La~~~g~~l~~~l~~Ilp~Ll~~l-~~~~~~vr~~a~~al~~l~~~~~ 2106 (2256)
.. ..+.+.+..+++.++... .... ........++...+....
T Consensus 671 -----------------------------------~~-~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 713 (959)
T d1wa5c_ 671 -----------------------------------QS-ATIPESIKPLAQPLLAPNVWELK-GNIPAVTRLLKSFIKTDS 713 (959)
T ss_dssp -----------------------------------HC-SSCCTTTGGGHHHHTSGGGGCCT-TTHHHHHHHHHHHHHHHG
T ss_pred -----------------------------------hC-CCccHHHHHHHHHHhhHHHHHHh-hhHHHHHHHHHHHHHhCH
Confidence 11 111222222233332211 1111 111222233333333211
Q ss_pred h--hcHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHhchhh-hhhhHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhc
Q 000098 2107 E--EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIVLLSD-SDSTTVAAAWEALSRVVA 2182 (2256)
Q Consensus 2107 ~--~~~~~ll~~Ll~~l~~~~~~vR~~A~~~l~~l~~~~~~~-~~~y~~~il~~L~~~l~D-~d~~Vr~~A~~aL~~l~~ 2182 (2256)
+ .+...++..+...+.+.. .+..++..++.++...+.. +.+|++.++..++..+.. ....+.++....++.++.
T Consensus 714 ~~~~~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 791 (959)
T d1wa5c_ 714 SIFPDLVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISN 791 (959)
T ss_dssp GGCSCSHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 1 223445555545554432 3567888899998877654 678999999999998865 456677788888888765
Q ss_pred cCC
Q 000098 2183 SVP 2185 (2256)
Q Consensus 2183 ~l~ 2185 (2256)
..+
T Consensus 792 ~~~ 794 (959)
T d1wa5c_ 792 KLG 794 (959)
T ss_dssp HHC
T ss_pred HcC
Confidence 443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.2e-09 Score=138.41 Aligned_cols=374 Identities=14% Similarity=0.126 Sum_probs=258.2
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hhH--HhHHHHHHHhccC-CChhHHHHHHHHHHHHHhhChhhHhhh-
Q 000098 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQC- 1496 (2256)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~R~~a~~~Lg~la~~~p~~l~~~- 1496 (2256)
.++..+..+++.++..|..++..+...-.. +.+ ..++|.+++.+.+ +++.+|..++.+|..++...++.....
T Consensus 17 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~ 96 (434)
T d1q1sc_ 17 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 96 (434)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhh
Confidence 344567778899999999999887653332 222 2479999999974 567899999999999998766543222
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhhCCCChh------HHHHHHHHHhcccc
Q 000098 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQTTFV 1566 (2256)
Q Consensus 1497 L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l~d~~~~------vr~al~~L~~~~~~ 1566 (2256)
-..++|.++..+.+++++++..|+++|..++..-.. ..+ ...++.++..+..++.. .+.+...+......
T Consensus 97 ~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (434)
T d1q1sc_ 97 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 176 (434)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhc
Confidence 236899999999999999999999999999854221 112 35677788877765432 12233333321111
Q ss_pred --cCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh--hhhhhhHHHHHhhcCCCHHHHHHHHHH
Q 000098 1567 --NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2256)
Q Consensus 1567 --~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~--~l~~Ll~~L~~~L~d~~~~VR~~a~~a 1642 (2256)
..........++|.+...+.+.+++++..++.++.+++.. . ....+ +...+++.+...+.++++.++..++.+
T Consensus 177 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~ 253 (434)
T d1q1sc_ 177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--P-NERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253 (434)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--C-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh--h-hhhHHHHhhcccchhcccccccchhhhhhchhhh
Confidence 1122234556789999999999999999999999988752 2 11111 234688999999999999999999999
Q ss_pred HHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--HH--HHHHHHHHHhccCCCHHHHH
Q 000098 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YF--EHILPDIIRNCSHQRASVRD 1714 (2256)
Q Consensus 1643 L~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~l--~~ll~~ll~~l~~~~~~vR~ 1714 (2256)
++.++....+. .-..+++.+...+.+ .+..+|..++..++.++...... .+ .++++.++..+.++++.+|.
T Consensus 254 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~ 332 (434)
T d1q1sc_ 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 332 (434)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHH
T ss_pred hhhHHhhhhHHHHHHHhccccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHH
Confidence 99887522110 012345566666665 56668888888888886533221 11 45788999999999999999
Q ss_pred HHHHHHHHhHhhhChhHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccc----hh------chHHHHHh
Q 000098 1715 GYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS----LP------LLLPAVED 1782 (2256)
Q Consensus 1715 ~al~~l~~La~~~g~~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~----~~------~llp~L~~ 1782 (2256)
.++.+++.+......+...++ ..+++.+...+...++.++..++.++..+++...... +. ..++.+..
T Consensus 333 ~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 412 (434)
T d1q1sc_ 333 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 412 (434)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHH
Confidence 999999999877665433333 2468999999999999999999999888775432111 11 13444545
Q ss_pred hcCCCCHHHHHHHHHHHHH
Q 000098 1783 GIFNDNWRIRQSSVELLGD 1801 (2256)
Q Consensus 1783 ~l~d~~~~iR~~sv~llg~ 1801 (2256)
...+++..++..+...+..
T Consensus 413 L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 413 LQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HHTCSSHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHH
Confidence 5566777788777766543
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=5.7e-09 Score=131.84 Aligned_cols=385 Identities=13% Similarity=0.113 Sum_probs=257.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhCcC--
Q 000098 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-- 1653 (2256)
Q Consensus 1578 ~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d-~~~~VR~~a~~aL~~L~~~~g~~-- 1653 (2256)
+..+.+.+.+.+++.+..|+..+.++...-.. ..+.... ..++|.|.+++.+ +++++|..++.+|..++..-.+.
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~ 93 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQ-PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 93 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSC-CCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCC-chHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhh
Confidence 44556778888999999999999988753222 1122222 3589999999964 56889999999999998532111
Q ss_pred --chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH--hHH--HHHHHHHHHhccCCCH-----HHHHHHHHHHHH
Q 000098 1654 --NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNCSHQRA-----SVRDGYLTLFKY 1722 (2256)
Q Consensus 1654 --~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~l--~~ll~~ll~~l~~~~~-----~vR~~al~~l~~ 1722 (2256)
.-...+|.++..|.+ .+...+..++.+++.++..... ..+ .+.++.++..+...+. .....+..++..
T Consensus 94 ~i~~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 94 AVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred Hhhhccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 123578999998876 5667888899999888743211 111 3466677777655422 223334455555
Q ss_pred hHhhhCh-hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc----chhchHHHHHhhcCCCCHHHHHHHHH
Q 000098 1723 LPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVE 1797 (2256)
Q Consensus 1723 La~~~g~-~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~----~~~~llp~L~~~l~d~~~~iR~~sv~ 1797 (2256)
++..... ....+...++|.+...+.++++.++..++.++..+....... ....++|.+.+.+.+.++.++..++.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~ 252 (434)
T d1q1sc_ 173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252 (434)
T ss_dssp HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence 5443222 122456788999999999999999999998888765321111 11237788888889999999999999
Q ss_pred HHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChh
Q 000098 1798 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877 (2256)
Q Consensus 1798 llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~ 1877 (2256)
.++.+... + +.....+.+ ..++..+...+.+....+|..++.++..++.+.+.
T Consensus 253 ~l~~l~~~---------------~-----~~~~~~~~~-------~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 305 (434)
T d1q1sc_ 253 AIGNIVTG---------------T-----DEQTQKVID-------AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 305 (434)
T ss_dssp HHHHHTTS---------------C-----HHHHHHHHH-------TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred hhhhHHhh---------------h-----hHHHHHHHh-------ccccchHHHhhcccchhhhHHHHHHHhhhccccch
Confidence 99887410 0 001111111 12333445556778888999999999999876655
Q ss_pred HHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCccc-----hhchHHHHhhhcCCCChhhHHhHHHHHHHHH
Q 000098 1878 TLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-----LPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2256)
Q Consensus 1878 ~l~~~l~-~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~-----l~~llp~L~~~l~d~~~~vR~~a~~aL~eii 1951 (2256)
....+.. .+++.++..+.+++..+|..++.+++.++....... -..+++.|.+.+.+.++..+..++.++..++
T Consensus 306 ~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll 385 (434)
T d1q1sc_ 306 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 385 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4333332 256666777788999999999999999998755442 2456888889898889999999999988887
Q ss_pred HhhC----hhhhHhhHh--hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000098 1952 ASAG----KSQLLSFMD--ELIPTIRTALCDSILEVRESAGLAFST 1991 (2256)
Q Consensus 1952 ~~~~----~~~l~~~l~--~li~~l~~~L~D~~~~VR~~A~~al~~ 1991 (2256)
.... ...+...+. ..++.+.....++++++++.|...+..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 386 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5432 111222221 245566666678889999988776654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=4.7e-08 Score=126.09 Aligned_cols=380 Identities=13% Similarity=0.097 Sum_probs=261.7
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhH---hh-H-HhHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhChhhH
Q 000098 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QG-V-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2256)
Q Consensus 1420 ~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~---~~-v-~~ilp~Ll~~L~-~~~w~~R~~a~~~Lg~la~~~p~~l 1493 (2256)
+.++.+...+..++...+..+...+..+...-.. +. + ..++|.+++.+. +.+...+..|+.+|+.++.+.+...
T Consensus 76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3456666777777888877777777766532111 11 2 347899999997 4577889999999999998776553
Q ss_pred hhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhhhCCCChhHH-HHHHHHHhccc--
Q 000098 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF-- 1565 (2256)
Q Consensus 1494 ~~~L-~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~-- 1565 (2256)
.... ..++|.+...+.+++.+++..|+++|+.++..-.. ..+ ..+++.++..+.+++..+. .+...+.....
T Consensus 156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~ 235 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 235 (503)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 3322 36889999999999999999999999999864321 112 4577888888888776654 44444444211
Q ss_pred ccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhh-hhhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2256)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~-l~~Ll~~L~~~L~d~~~~VR~~a~~aL~ 1644 (2256)
...........++|.+...+.+.+++++..++.++..++.. ........ -..+++.+...+.++++.++..++.+++
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313 (503)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC--CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence 11222334567889999999999999999999999998862 22222222 2357888999999999999999999999
Q ss_pred HHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh---HH-HHHHHHHHHhccCCCHHHHHHH
Q 000098 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGY 1716 (2256)
Q Consensus 1645 ~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l-~~ll~~ll~~l~~~~~~vR~~a 1716 (2256)
.++..-+.. .-..+++.+...+.+ .+..+|..++.+++.++.+.... .. ..+++.++..+.+.++.+|..+
T Consensus 314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a 392 (503)
T d1wa5b_ 314 NIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 392 (503)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence 988532211 112467888777765 56668899999999886532211 11 4578888999989999999999
Q ss_pred HHHHHHhHhhhCh--hHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc------cchh---------chH
Q 000098 1717 LTLFKYLPRSLGV--QFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT------TSLP---------LLL 1777 (2256)
Q Consensus 1717 l~~l~~La~~~g~--~f~~yl--~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~------~~~~---------~ll 1777 (2256)
+.++..++..... +...++ ..+++.+.+.+...+..+...++.++..+...... .... ..+
T Consensus 393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~ 472 (503)
T d1wa5b_ 393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 472 (503)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCH
Confidence 9999988865432 222333 34788899999888888888888888776642110 0000 123
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHH
Q 000098 1778 PAVEDGIFNDNWRIRQSSVELLGDL 1802 (2256)
Q Consensus 1778 p~L~~~l~d~~~~iR~~sv~llg~l 1802 (2256)
..+.....+++..++..|..++...
T Consensus 473 ~~i~~Lq~~~~~~i~~~A~~il~~~ 497 (503)
T d1wa5b_ 473 EKIFNCQQNENDKIYEKAYKIIETY 497 (503)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3344444567777877777766554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=1.7e-07 Score=120.72 Aligned_cols=385 Identities=14% Similarity=0.095 Sum_probs=258.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhCcC-
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEE- 1653 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~-d~~~~VR~~a~~aL~~L~~~~g~~- 1653 (2256)
.++.+.+.+.+.+...+..++..+..+... .....+...+ ..++|.|...+. +.++.++..|+.+|+.++......
T Consensus 77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~-~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 356666777788888888888777776542 1111122222 357888888887 567889999999999887532111
Q ss_pred ---chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcH--hHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhHhh
Q 000098 1654 ---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2256)
Q Consensus 1654 ---~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~l--~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~ 1726 (2256)
.-..++|.+...|.+ .+..++..++.+++.++..... ..+ ..+++.++..+.+.+..++..+++++..++..
T Consensus 156 ~~~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp HHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCChHHHHHHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence 112467888888876 5566889999999988753221 111 35778889999999999999999999998865
Q ss_pred hChhH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc---c-hhchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000098 1727 LGVQF-QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---S-LPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2256)
Q Consensus 1727 ~g~~f-~~yl~~ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~---~-~~~llp~L~~~l~d~~~~iR~~sv~llg~ 1801 (2256)
..... ......++|.+...+...++.++..++.++..+....... . -..+++.+...+.+.++.++..++..++.
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~n 314 (503)
T d1wa5b_ 235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 314 (503)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHH
Confidence 43211 2355678999999999999999999988888776422111 1 12367888888999999999999999998
Q ss_pred HHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcChhHHHH
Q 000098 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2256)
Q Consensus 1802 ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~Vr~aA~~~l~~l~~~~~~~l~~ 1881 (2256)
+... . .+ ....+.+ ..+++.+...+.+.+..+|..++.++..++.+.+.....
T Consensus 315 l~~~---------------~----~~-~~~~~~~-------~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~ 367 (503)
T d1wa5b_ 315 IVTG---------------N----DL-QTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 367 (503)
T ss_dssp HTTS---------------C----HH-HHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHH---------------H----HH-HHHhhhc-------cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHH
Confidence 7411 0 00 0011111 125566666677788889999999999998877655444
Q ss_pred HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc--c-----hhchHHHHhhhcCCCChhhHHhHHHHHHHHHHh
Q 000098 1882 IM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--V-----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2256)
Q Consensus 1882 ~l-~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~--~-----l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2256)
++ ..+++.++..+.+.+..++..++++++.++...... . -..+++.+.+.+...++.....++.++..++..
T Consensus 368 i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~ 447 (503)
T d1wa5b_ 368 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 447 (503)
T ss_dssp HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 44 345666677778889999999999999998754321 1 245678888888877887777777777776643
Q ss_pred hChhh------hHhhH-----hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000098 1954 AGKSQ------LLSFM-----DELIPTIRTALCDSILEVRESAGLAFS 1990 (2256)
Q Consensus 1954 ~~~~~------l~~~l-----~~li~~l~~~L~D~~~~VR~~A~~al~ 1990 (2256)
..... ..++. ...+..+.....+++.++++.|..-+.
T Consensus 448 ~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~ 495 (503)
T d1wa5b_ 448 GEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 495 (503)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred HHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21100 01111 113344444445677888877765444
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=1.7e-07 Score=109.74 Aligned_cols=252 Identities=20% Similarity=0.183 Sum_probs=174.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHH-HHHHHHHhcccccCCChhhHhhHH
Q 000098 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2256)
Q Consensus 1500 Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2256)
-.+.|+++|+|+++.||..|+.+|+.++. +..+|.+.+.+.|++..+| .|+..|....... .....+.
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~----~~~~~~~ 88 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK----KCEDNVF 88 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT----TTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc----ccccchH
Confidence 34557789999999999999999998753 3567888999999999998 4777776532211 1222333
Q ss_pred HH-HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHH
Q 000098 1579 PI-VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2256)
Q Consensus 1579 p~-L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~ 1657 (2256)
+. +...+++.++.+|..++..++.++.. . ..+.+.+++.+...+.|+++.+|..+..+++.+.. +.
T Consensus 89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~--~----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-------~~ 155 (276)
T d1oyza_ 89 NILNNMALNDKSACVRATAIESTAQRCKK--N----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KA 155 (276)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHH--C----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHccc--c----chhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-------HH
Confidence 33 34456889999999999999998863 2 12345688889999999999999998888775432 22
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHH
Q 000098 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2256)
Q Consensus 1658 lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ 1737 (2256)
.++.+...+.. ....++..+...+..+.. + .....+.+...+.+.++.+|..+..+++.+. . +.
T Consensus 156 ~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~------~~ 219 (276)
T d1oyza_ 156 TIPLLINLLKD-PNGDVRNWAAFAININKY--D---NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D------KR 219 (276)
T ss_dssp CHHHHHHHHTC-SSHHHHHHHHHHHHHHTC--C---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C------GG
T ss_pred HHHHHHHhccc-ccchhhhhHHHHHHhhhc--c---ccccchhhhhhhhhhhhhhhhhhccccchhh----h------hh
Confidence 34555555544 455566655544433211 1 1334556677788899999999888877543 2 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcCC-CCHHHHHHHHHHHH
Q 000098 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLG 1800 (2256)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~d-~~~~iR~~sv~llg 1800 (2256)
.+|.+++.+.|+ .||..+..++..+ + -+..+|.|.+.+.+ +++.+|..+++.|.
T Consensus 220 ~~~~L~~~l~d~--~vr~~a~~aL~~i----g---~~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 220 VLSVLCDELKKN--TVYDDIIEAAGEL----G---DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp GHHHHHHHHTSS--SCCHHHHHHHHHH----C---CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred hHHHHHHHhCCh--HHHHHHHHHHHHc----C---CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 567778888775 4898888888765 2 23467777776655 57889999887763
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=4.7e-07 Score=105.95 Aligned_cols=251 Identities=17% Similarity=0.114 Sum_probs=154.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhH
Q 000098 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2256)
Q Consensus 1380 l~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~i 1459 (2256)
.+.|.+.+.++ ++.+|..|+.+++.+. . ...+|.++..+.|+++.||..|..+++.+..... .-+..
T Consensus 21 ~~~L~~~L~d~-~~~vR~~A~~~L~~~~----~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~--~~~~~ 87 (276)
T d1oyza_ 21 DDELFRLLDDH-NSLKRISSARVLQLRG----G------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK--CEDNV 87 (276)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHC----C------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--THHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhC----C------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--cccch
Confidence 34455566655 7888888888766542 1 3567788888888889999888888776532211 11233
Q ss_pred HHHHHH-hccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000098 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2256)
Q Consensus 1460 lp~Ll~-~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 1538 (2256)
++.+.. .+.+.+|.+|..++.+|+.+....+. ..+.+++.+...+.|+++.||..+..+++.+... ..
T Consensus 88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~-------~~ 156 (276)
T d1oyza_ 88 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------AT 156 (276)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchH-------HH
Confidence 333333 34678888888888888888765432 2356777788888888888888888777655421 22
Q ss_pred HHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000098 1539 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2256)
Q Consensus 1539 v~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l 1617 (2256)
++.+...+.+.+..++. +...+..... ......+.+...+.+.++.+|..+...++.+..
T Consensus 157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~------------ 217 (276)
T d1oyza_ 157 IPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------ 217 (276)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHhcccccchhhhhHHHHHHhhhc-------cccccchhhhhhhhhhhhhhhhhhccccchhhh------------
Confidence 34455556666655542 2222211000 012344556666777778887776666554321
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 000098 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2256)
Q Consensus 1618 ~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L 1682 (2256)
+..++.+...+.|+ .+|..++.+|+.+. . +..+|.|.+.+.++++..+|..+..+|
T Consensus 218 ~~~~~~L~~~l~d~--~vr~~a~~aL~~ig----~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 218 KRVLSVLCDELKKN--TVYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp GGGHHHHHHHHTSS--SCCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCh--HHHHHHHHHHHHcC----C---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 12455566666654 47777888877653 2 356777777777666666777776665
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=5.9e-05 Score=93.60 Aligned_cols=398 Identities=12% Similarity=0.084 Sum_probs=198.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchh--hhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC-
Q 000098 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE- 1653 (2256)
Q Consensus 1577 i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~--~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~- 1653 (2256)
.+|.+.+.|++.+++++..++.+++++|. ++ +.... .-...+|.|..++.++++++|..|+.+|+.++..-.+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~--~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--QD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--SC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHc--CC-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 47899999999999999999999999985 23 22222 22356899999999999999999999999998422110
Q ss_pred --c-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHh--HHHHHHHHHHHhc----------------cCCCHHH
Q 000098 1654 --N-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNC----------------SHQRASV 1712 (2256)
Q Consensus 1654 --~-~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~l~~ll~~ll~~l----------------~~~~~~v 1712 (2256)
. -...++.++..+....+..+|..++..+..+....... .....++.+...+ ...+..+
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 0 11247888888887778888988888888876543221 1222223332221 2346778
Q ss_pred HHHHHHHHHHhHhhhChhHHH-HHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHhhccchhchHHHHHhhcC
Q 000098 1713 RDGYLTLFKYLPRSLGVQFQN-YLQQVLPAILDGLADEN------ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785 (2256)
Q Consensus 1713 R~~al~~l~~La~~~g~~f~~-yl~~ilp~Ll~~L~d~~------~~VR~~Al~al~~iv~~~~~~~~~~llp~L~~~l~ 1785 (2256)
+..++.++..++......-.. ....+++.+...+.... ..........+......... .....+..+.....
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA-EVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH-HSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHhhhh
Confidence 888887777665432111000 00123344443332110 00111111111110000000 00001111111000
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCCcchHHHHHHHHHHhcchhhHHHHHHHHHH-hcCCcHHHHHHH
Q 000098 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAA 1864 (2256)
Q Consensus 1786 d~~~~iR~~sv~llg~ll~~~~g~~~~~~~~~~~ed~~~~~e~~~~~l~~~Lg~e~~~~vl~~L~~~-~~D~~~~Vr~aA 1864 (2256)
+ ..........++....................+... .. .+ .....+..+... .......++..+
T Consensus 239 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~---~~~~~i~~l~~l~~~~~~~~~~~~~ 304 (457)
T d1xm9a1 239 N--AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG-SG--------WL---YHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp -----------------------------CCCCCSSCCG-GG--------GG---GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred h--hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHH-HH--------HH---HhhcHHHHHHHHHhcccchHHHHHH
Confidence 0 000000000111000000000000000000000000 00 00 011222222222 233345666777
Q ss_pred HHHHHHHHhcChhHHH----HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhCcc--chhchHHHHhhhcCC--
Q 000098 1865 LHVWKTIVANTPKTLK----EIM--PVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPILSRGLKD-- 1934 (2256)
Q Consensus 1865 ~~~l~~l~~~~~~~l~----~~l--~~Ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~--~l~~llp~L~~~l~d-- 1934 (2256)
...+..+..+...... ..+ ...++.++..+.++++.+|..++.+++.++...... .....+|.+...+..
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~ 384 (457)
T d1xm9a1 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccc
Confidence 7777666554322111 111 123566677789999999999999999987532211 223445556555532
Q ss_pred ----CChhhHHhHHHHHHHHHHhhChhhhHhhH-hhHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 000098 1935 ----PSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD-SILEVRESAGLAFSTLF 1993 (2256)
Q Consensus 1935 ----~~~~vR~~a~~aL~eii~~~~~~~l~~~l-~~li~~l~~~L~D-~~~~VR~~A~~al~~l~ 1993 (2256)
.++.++..+|.++..+..... +...... ...++.+...+.+ .++.++++|+.++..++
T Consensus 385 ~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 385 GNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred cCcCCcHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 234678889999888775432 2122222 2366777777654 56789999988887764
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=8.7e-05 Score=85.65 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=126.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhH-hhH--HhHHHHHH-HhccCCChhHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHh
Q 000098 1433 VVAVREAAECAARAMMSQLSA-QGV--KLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEV 1507 (2256)
Q Consensus 1433 ~~~VR~aa~~al~~l~~~l~~-~~v--~~ilp~Ll-~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~-~~L~~Ivp~L~~~ 1507 (2256)
+..+|..|.+++..++..... ..+ ..-++.++ ..+.+.+..+|..|+.+|+.++...+..-. -.-...+|.++.+
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 456677777777777654332 112 12355555 467789999999999999999987764322 1224788999998
Q ss_pred hc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHHHHHHHHhcccccCCChhhHhhHHHHHHHhhc
Q 000098 1508 LT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2256)
Q Consensus 1508 L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2256)
+. ++++.||..++.+|..++....+.. ..+ .....++.+.+.+.
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~----------------------------------~~~~gi~~L~~lL~ 154 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGL-LQF----------------------------------LRLDGFSVLMRAMQ 154 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHH-HHH----------------------------------HHTTHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhH-HHH----------------------------------HHhhhhhHHHHHHh
Confidence 85 7889999999999999986432110 000 01124566777777
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcchhhh-hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 000098 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2256)
Q Consensus 1587 d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l-~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~ 1649 (2256)
+.+..++..++.++.+++.. ++.....+. ...+|.+..++.++++.+|+.+..+|+.++..
T Consensus 155 ~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 155 QQVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCchHHHHHHHHHHHHHHhc--cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 88889999999999999863 322222222 34789999999999999999999999999863
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.00036 Score=86.20 Aligned_cols=377 Identities=15% Similarity=0.105 Sum_probs=191.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhHHhHHhhcC---ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccc
Q 000098 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2256)
Q Consensus 1302 l~~Ll~~L~~~~~~Vq~~~~~~L~~lv~~~~~---~~--~~~l~~Ll~~L~~~~~~~vR~~Aa~~L~~lv~~~g~--~~~ 1374 (2256)
+|.|++.|.++++++|..++.+|..+...-.+ .+ ...++.|+..| ++++..+|..|+.+|..++..... ..+
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 68889999999999999999999888643221 11 13366666654 566789999999999999853321 112
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHc----------------CCCcHHHHH
Q 000098 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF----------------SDQVVAVRE 1438 (2256)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l----------------~D~~~~VR~ 1438 (2256)
.....++.+.+.+....++..|+.+..++..++...... .......++.++..+ ...+..++.
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 223456777777777778999999999998887653321 112222223322222 234667777
Q ss_pred HHHHHHHHHHhhhhHhhH----HhHHHHHHHhccC------CChhHHHHHHHHHHHHHhhChhhHhhhhhhHH-------
Q 000098 1439 AAECAARAMMSQLSAQGV----KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV------- 1501 (2256)
Q Consensus 1439 aa~~al~~l~~~l~~~~v----~~ilp~Ll~~L~~------~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Iv------- 1501 (2256)
.+..++..+......... ..+++.+.+.+.+ ............+..............+....
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 777777666543222111 1234544444421 11111111222222111100000000000000
Q ss_pred --HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch----hH--HhHHHHHHhhhCCC-ChhHHH-HHHHHHhcccccCCC-
Q 000098 1502 --PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EI--ASLVPTLLMGLTDP-NDHTKY-SLDILLQTTFVNTVD- 1570 (2256)
Q Consensus 1502 --p~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i--~~lv~~Ll~~l~d~-~~~vr~-al~~L~~~~~~~~~~- 1570 (2256)
......+.............. .+......+ .+ ...++.+...+... ++.+.. +...+..........
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (457)
T d1xm9a1 242 TEKSSTGCFSNKSDKMMNNNYDC--PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred hHHHhhhhhhhhhHHHHHHHHhh--hhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence 000001111000011000000 000000011 11 34555555544332 233322 222222211111000
Q ss_pred ----h--hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcC------CCHHHHHH
Q 000098 1571 ----A--PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD------PIPEVRSV 1638 (2256)
Q Consensus 1571 ----~--~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d------~~~~VR~~ 1638 (2256)
. .....++|.+.+.+.+.++.++..++.++++++.. +..........++.+...+.+ .+++++..
T Consensus 320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~---~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~ 396 (457)
T d1xm9a1 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC---hhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence 0 01124578889999999999999999999999862 222222334566777777653 34678988
Q ss_pred HHHHHHHHHHhhCcC----chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000098 1639 AARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2256)
Q Consensus 1639 a~~aL~~L~~~~g~~----~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i 1685 (2256)
++.++..++....+. .-...++.|++.+.+..+..++..|+..|..+
T Consensus 397 a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L 447 (457)
T d1xm9a1 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999998887432211 11246777777777666666666666666554
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.84 E-value=1.3e-06 Score=86.66 Aligned_cols=107 Identities=20% Similarity=0.324 Sum_probs=81.2
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhh
Q 000098 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2256)
Q Consensus 1429 l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L 1508 (2256)
++|+++.||..|..+++.+ ++ ..++.+++.+.+++|.+|..++.+||.+.. +..+|.+..++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l 62 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLL 62 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----CH----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhh
Confidence 4688889999888777654 22 345677888999999999999999886432 35678888999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHH
Q 000098 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDIL 1560 (2256)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L 1560 (2256)
+|+++.||.+|+++|+.++. ...++.|...+.|++..+|. |+.+|
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999998753 24556667777888777763 45444
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=7.5e-05 Score=86.22 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCcC----chHHHHHHHHHH
Q 000098 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDA 1665 (2256)
Q Consensus 1590 ~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~----~~~~lip~Ll~~ 1665 (2256)
.+.|..|+..+.++++.......+. .+..+.+.+..+++++++.+|..|+.+|+.++...... .-...+|.|+..
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~~l~-~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHH-HcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 4677788888888875211111111 12233344456788999999999999999999643211 123578999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhcHh----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhHhhhChhHHHHHH-HHHH
Q 000098 1666 LKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ-QVLP 1740 (2256)
Q Consensus 1666 L~~~~~~~~R~~aa~~L~~i~~~~g~~----~l~~ll~~ll~~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~-~ilp 1740 (2256)
+.++.+..+|..++.+++.++...... .-...++.++..+.+.+..++..++.+++.++...+.....+.. ..+|
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~ 189 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence 988788889999999999988655432 12456788889999999999999999999988765554444443 4789
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000098 1741 AILDGLADENESVRDAALGAGHVLVE 1766 (2256)
Q Consensus 1741 ~Ll~~L~d~~~~VR~~Al~al~~iv~ 1766 (2256)
.+...+.++++.+|..++.++..+..
T Consensus 190 ~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 190 QLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888764
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.35 E-value=3.3e-05 Score=85.95 Aligned_cols=182 Identities=20% Similarity=0.200 Sum_probs=114.0
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHh
Q 000098 1465 KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544 (2256)
Q Consensus 1465 ~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~ 1544 (2256)
.++.|+.|.+|..|.. .++ +..|..+++|+++.||..|+..|+ . +.+..
T Consensus 49 ~~l~~p~~e~Ra~Aa~-------~a~----------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~-------~~L~~ 97 (233)
T d1lrva_ 49 QYLADPFWERRAIAVR-------YSP----------VEALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSA 97 (233)
T ss_dssp GGTTCSSHHHHHHHHT-------TSC----------GGGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGG
T ss_pred HHhcCCcHHHHHHHHh-------cCC----------HHHHHHHhcCCCHHHHHHHHHHcC-------H-------HHHHH
Confidence 4667889999965542 222 123556789999999999876542 1 23556
Q ss_pred hhCCCChhHHHH-HHHHHhcccccCCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHH
Q 000098 1545 GLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2256)
Q Consensus 1545 ~l~d~~~~vr~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~ 1623 (2256)
.+.|++..+|.+ ...+. .+.+..+++|.++.+|..++.. + . .+.
T Consensus 98 L~~D~d~~VR~~aa~~l~----------------~~~L~~Ll~D~d~~VR~~aa~~---~-----~-----------~~~ 142 (233)
T d1lrva_ 98 LMFDEDREVRITVADRLP----------------LEQLEQMAADRDYLVRAYVVQR---I-----P-----------PGR 142 (233)
T ss_dssp TTTCSCHHHHHHHHHHSC----------------TGGGGGGTTCSSHHHHHHHHHH---S-----C-----------GGG
T ss_pred HhcCCChhHHHHHHhccC----------------HHHHHHHhcCCCHHHHHHHHhc---c-----c-----------hhH
Confidence 678888888743 22221 1245566788899999876542 1 1 112
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHhhCcCchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHH
Q 000098 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703 (2256)
Q Consensus 1624 L~~~L~d~~~~VR~~a~~aL~~L~~~~g~~~~~~lip~Ll~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ll~~ll~ 1703 (2256)
+..++.|+++.||..++.. .+. +++.. +.++.+..+|..++..+ |. +.+..
T Consensus 143 L~~L~~D~d~~VR~~aA~~-------~~~-------~~L~~-l~~D~d~~VR~~aa~~L-------~~-------~~L~~ 193 (233)
T d1lrva_ 143 LFRFMRDEDRQVRKLVAKR-------LPE-------ESLGL-MTQDPEPEVRRIVASRL-------RG-------DDLLE 193 (233)
T ss_dssp GGGTTTCSCHHHHHHHHHH-------SCG-------GGGGG-STTCSSHHHHHHHHHHC-------CG-------GGGGG
T ss_pred HHHHhcCCCHHHHHHHHHh-------cCH-------HHHHH-HccCCCHHHHHHHHHhc-------Cc-------HHHHH
Confidence 3345778999999877653 232 22322 33457777888776544 22 24556
Q ss_pred hccCCCHHHHHHHHHHHHHhHhhhChhHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000098 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALG 1759 (2256)
Q Consensus 1704 ~l~~~~~~vR~~al~~l~~La~~~g~~f~~yl~~ilp~Ll~~L~d~~~~VR~~Al~ 1759 (2256)
.+.|+++.||..+.. .. -+.++..|.|+++.||..+.+
T Consensus 194 l~~D~d~~VR~aaae-------~~-----------~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 194 LLHDPDWTVRLAAVE-------HA-----------SLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp GGGCSSHHHHHHHHH-------HS-----------CHHHHHHCCCCCHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHH-------hc-----------cHHHHHHhCCCCHHHHHHHHH
Confidence 678889999987652 11 134567788999999987753
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.32 E-value=0.00017 Score=70.81 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHHHHHhccCchHhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCC
Q 000098 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2256)
Q Consensus 1392 ~~~~Re~al~al~~L~~~l~~~~~pyv~~llp~ll~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2256)
|+.+|..|+.+++.+ |. ..++.++..+.|+++.||..+..+++.+. -...+|.+.+.+.|++
T Consensus 5 ~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~d~~ 66 (111)
T d1te4a_ 5 NKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ-------DERAVEPLIKLLEDDS 66 (111)
T ss_dssp CCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC-------SHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc-------hhhhHHHHHhhhccch
Confidence 556666666654432 21 23455677899999999999988876442 2346788888999999
Q ss_pred hhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000098 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2256)
Q Consensus 1472 w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2256)
|.+|..++.+||.+.. +..+|.+..+++|+++.||.+|..+|.
T Consensus 67 ~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 67 GFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp THHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998732 366788888999999999999998875
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.97 E-value=0.00011 Score=81.75 Aligned_cols=135 Identities=19% Similarity=0.149 Sum_probs=78.1
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000098 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2256)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L~ 1505 (2256)
...+.|++..||..+...+ +. +.+...+.|.+|.+|..+...+ +. +.+.
T Consensus 96 ~~L~~D~d~~VR~~aa~~l-------~~-------~~L~~Ll~D~d~~VR~~aa~~~-------~~----------~~L~ 144 (233)
T d1lrva_ 96 SALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------PP----------GRLF 144 (233)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------CG----------GGGG
T ss_pred HHHhcCCChhHHHHHHhcc-------CH-------HHHHHHhcCCCHHHHHHHHhcc-------ch----------hHHH
Confidence 3456788888887765432 21 2334456778888887765421 11 1233
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCChhHHH-HHHHHHhcccccCCChhhHhhHHHHHHHh
Q 000098 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2256)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2256)
.+++|+++.||.+++..+ +. +.|...++|++..+|. +...+. .+.+..+
T Consensus 145 ~L~~D~d~~VR~~aA~~~-------~~-------~~L~~l~~D~d~~VR~~aa~~L~----------------~~~L~~l 194 (233)
T d1lrva_ 145 RFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRLR----------------GDDLLEL 194 (233)
T ss_dssp GTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHCC----------------GGGGGGG
T ss_pred HHhcCCCHHHHHHHHHhc-------CH-------HHHHHHccCCCHHHHHHHHHhcC----------------cHHHHHH
Confidence 467788888888776532 11 2345666777777763 333321 1345566
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhHHHHHhhcCCCHHHHHHHHH
Q 000098 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2256)
Q Consensus 1585 L~d~~~~vR~~a~~~l~~L~~~l~~~~~l~~~l~~Ll~~L~~~L~d~~~~VR~~a~~ 1641 (2256)
++|.+|.||..++.. +.+.+...+.|+++.||..+..
T Consensus 195 ~~D~d~~VR~aaae~--------------------~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 195 LHDPDWTVRLAAVEH--------------------ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp GGCSSHHHHHHHHHH--------------------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHh--------------------ccHHHHHHhCCCCHHHHHHHHH
Confidence 677788887765421 1123445567888888877654
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.03 E-value=0.27 Score=57.06 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=88.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhH-------hhHHhHHHHHHHhccCCChhHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000098 1432 QVVAVREAAECAARAMMSQLSA-------QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2256)
Q Consensus 1432 ~~~~VR~aa~~al~~l~~~l~~-------~~v~~ilp~Ll~~L~~~~w~~R~~a~~~Lg~la~~~p~~l~~~L~~Ivp~L 1504 (2256)
.++.+|..+.-+++.++..+-. +.++.+...+.+.....+-..+..++.+||.+.. +.+++.+
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l 208 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 208 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHH
Confidence 4677888888888877655321 1234444455555566666777788899998642 4556666
Q ss_pred HHhhcC-------CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhhhCCCC--hhHH-HHHHHHHhcccccCCChhhH
Q 000098 1505 TEVLTD-------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSL 1574 (2256)
Q Consensus 1505 ~~~L~D-------~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~Ll~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l 1574 (2256)
.+++.+ ....+|.+|.+||..+.... | ..+.+.++....|+. ..+| .|+..+..+ .|+.
T Consensus 209 ~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~--p--~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~ 277 (336)
T d1lsha1 209 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 277 (336)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHHhcccccccccccHHHHHHHHHHHHHhhhcC--c--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCH
Confidence 666643 35789999999999886542 2 122233334433443 3566 355555431 1233
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000098 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2256)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vR~~a~~~l~~L~~ 1605 (2256)
..+..+....-.+++..|+......+.++++
T Consensus 278 ~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 278 ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 3232232233356677776665556666554
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=92.88 E-value=0.64 Score=53.68 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhhCcc-cchhh----cHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000098 1335 APTLVSRLLDQLMK---SDKYGERRGAAFGLAGVVKGFGIS-SLKKY----GIAATLREGLADRNSAKRREGALLAFECL 1406 (2256)
Q Consensus 1335 ~~~~l~~Ll~~L~~---~~~~~vR~~Aa~~L~~lv~~~g~~-~~~~~----~il~~L~~~l~~~~~~~~Re~al~al~~L 1406 (2256)
..+++..+++.+.. ..++.+|..+..+++.++...-.. ..... .+...+.+....+ +.+.+..++.++|.+
T Consensus 121 t~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~ 199 (336)
T d1lsha1 121 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNA 199 (336)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccc-chHHHHHHHHHHhcc
Confidence 44555555554432 236889999999999999753110 00111 3444444444444 555555666666655
Q ss_pred HHHhccCchHhHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHhhhhHhhHHhHHHHHHHhccCCChhHHHHHH
Q 000098 1407 CEKLGRLFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479 (2256)
Q Consensus 1407 ~~~l~~~~~pyv~~llp~ll~~l~-------D~~~~VR~aa~~al~~l~~~l~~~~v~~ilp~Ll~~L~~~~w~~R~~a~ 1479 (2256)
.. + ..++.+...+. +....+|.+|.++++.+....+....+.+++.+.+ ...+..+|.+|+
T Consensus 200 g~--p--------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~ 267 (336)
T d1lsha1 200 GQ--P--------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLN--VAIKSELRIRSC 267 (336)
T ss_dssp TC--G--------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC--TTSCHHHHHHHH
T ss_pred CC--H--------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHcC--CCCChHHHHHHH
Confidence 31 1 22333433332 23678999999999887655433222333333332 245678999888
Q ss_pred HHHHHHHhhChhhHhhhhhhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhh
Q 000098 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV 1529 (2256)
Q Consensus 1480 ~~Lg~la~~~p~~l~~~L~~Ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~ 1529 (2256)
..|- .+.|.. .++..+...+ .|++..|+......|..+.+.
T Consensus 268 ~~lm---~t~P~~------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s 309 (336)
T d1lsha1 268 IVFF---ESKPSV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 309 (336)
T ss_dssp HHHH---HTCCCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHH---hcCCCH------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence 7653 344432 3344455544 688899999999999888764
|